BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035503
         (788 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score = 1176 bits (3041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/837 (67%), Positives = 665/837 (79%), Gaps = 52/837 (6%)

Query: 1   MASFTFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQI 60
           MAS   TT PNP  SH KP+K  K + T L KL+E D +  SLYKSYFH ISSL K+  +
Sbjct: 1   MASLPITTTPNPHTSHFKPRKSSKFASTRLAKLQEKDENRRSLYKSYFHHISSLCKDGHL 60

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           +E+V LL+EM+  +FQIGPEIYGELLQGCVY+R ++TGQQIHARILKNGDFFA+NEYVET
Sbjct: 61  QESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVET 120

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
           KLVVFYAKCD  +VA RLF RLRV+NVFSWAAI+GL CR+G SE AL+GF+EMQE+GV P
Sbjct: 121 KLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFP 180

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           DNFVLPNVLKACG+L  +G G+ VHGYVLK+GF  CVFV+SSL+DMYGKCG LE+ARKVF
Sbjct: 181 DNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVF 240

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D M+ +NVV WNSMIVGYVQNGLN+EAI VFY+M +EG+EPTRV+V S LSASANLDAL 
Sbjct: 241 DSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALI 300

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           EGKQ HA+A++N ++LDN+LGSSIINFYSKVGL+EDAE+VFSRM+E+D+VTWNLLI+SYV
Sbjct: 301 EGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYV 360

Query: 361 QSGQ----------------------------------------------------SDVV 368
           Q  Q                                                    SDVV
Sbjct: 361 QHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVV 420

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           VA+SI+DMYAKCERID+A++VF+S   RD+VLWNTLLAAYA +G SGEA +LFYQMQ + 
Sbjct: 421 VANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDS 480

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
           + PN+ISWNSVILGFLRNGQ+NEAKDMF QMQSLG QPNLITWTTLISGL Q+  G EAI
Sbjct: 481 VPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAI 540

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
           LFFQ+M E GI+PS  +IT  L ACTD+ SL  GRAIHG++ RH+ CL  P+ TSLVDMY
Sbjct: 541 LFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMY 600

Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
           AKCG+I +AK+VF +  SKELP+YNAMIS YA+HG AVEALALFK+LQ++GI+PDSITFT
Sbjct: 601 AKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFT 660

Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
           +IL+ACSHAGLVNEGL LF  M S H + P MEH+GCVV+LLSRCGNLDEALR+ILTMP 
Sbjct: 661 SILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPF 720

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
            PDAHI+GSLL+ C + +E EL EY+S+HL +LEP N GNYVALSNAYAA+GRW EVS +
Sbjct: 721 QPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNM 780

Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           RD+MK +GLRKNPGCSWIQ G +L+VFVA D SHPKTEEIYA LA+L   +R +  V
Sbjct: 781 RDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEIYAMLAMLLSEMRFMGYV 837


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score = 1151 bits (2978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/817 (67%), Positives = 652/817 (79%), Gaps = 52/817 (6%)

Query: 21   KPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPE 80
            K  K + T L KL+E D +  SLYKSYFH ISSL K+  ++E+V LL+EM+  +FQIGPE
Sbjct: 1116 KSSKFASTRLAKLQEKDENRRSLYKSYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPE 1175

Query: 81   IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
            IYGELLQGCVY+R ++TGQQIHARILKNGDFFA+NEYVETKLVVFYAKCD  +VA RLF 
Sbjct: 1176 IYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFH 1235

Query: 141  RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
            RLRV+NVFSWAAI+GL CR+G SE AL+GF+EMQE+GV PDNFVLPNVLKACG+L  +G 
Sbjct: 1236 RLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGL 1295

Query: 201  GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
            G+ VHGYVLK+GF  CVFV+SSL+DMYGKCG LE+ARKVFD M+ +NVV WNSMIVGYVQ
Sbjct: 1296 GKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQ 1355

Query: 261  NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            NGLN+EAI VFY+M +EG+EPTRV+V S LSASANLDAL EGKQ HA+A++N ++LDN+L
Sbjct: 1356 NGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNIL 1415

Query: 321  GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ---------------- 364
            GSSIINFYSKVGL+EDAE+VFSRM+E+D+VTWNLLI+SYVQ  Q                
Sbjct: 1416 GSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENL 1475

Query: 365  ------------------------------------SDVVVASSIVDMYAKCERIDNAKQ 388
                                                SDVVVA+SI+DMYAKCERID+A++
Sbjct: 1476 RFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARK 1535

Query: 389  VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
            VF+S   RD+VLWNTLLAAYA +G SGEA +LFYQMQ + + PN+ISWNSVILGFLRNGQ
Sbjct: 1536 VFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQ 1595

Query: 449  MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
            +NEAKDMF QMQSLG QPNLITWTTLISGL Q+  G EAILFFQ+M E GI+PS  +IT 
Sbjct: 1596 VNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITS 1655

Query: 509  ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
             L ACTD+ SL  GRAIHG++ RH+ CL  P+ TSLVDMYAKCG+I +AK+VF +  SKE
Sbjct: 1656 VLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKE 1715

Query: 569  LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
            LP+YNAMIS YA+HG AVEALALFK+LQ++GI+PDSITFT+IL+ACSHAGLVNEGL LF 
Sbjct: 1716 LPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFA 1775

Query: 629  GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
             M S H + P MEH+GCVV+LLSRCGNLDEALR+ILTMP  PDAHI+GSLL+ C + +E 
Sbjct: 1776 DMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEI 1835

Query: 689  ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
            EL EY+S+HL +LEP N GNYVALSNAYAA+GRW EVS +RD+MK +GLRKNPGCSWIQ 
Sbjct: 1836 ELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQT 1895

Query: 749  GEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
            G +L+VFVA D SHPKTEEIYA LA+L   +R +  V
Sbjct: 1896 GGKLNVFVAGDGSHPKTEEIYAMLAMLLSEMRFMGYV 1932


>gi|449464272|ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
 gi|449520209|ref|XP_004167126.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
          Length = 840

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/834 (56%), Positives = 618/834 (74%), Gaps = 53/834 (6%)

Query: 1   MASFTFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQI 60
           MA+  F  P NP +S   P+KP   S TH     +  ++ +  YKSY + ISSL K+  +
Sbjct: 1   MAALPFPLPTNPIYSLYTPRKP-HYSPTHFASFSQIASNVQISYKSYLNHISSLCKQGHL 59

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
            EA+DL+T+++  +  IGP++YGELLQGCVY+R +  GQQIH RILKNG+  A+NEY+ET
Sbjct: 60  LEALDLVTDLELEDITIGPDVYGELLQGCVYERALSLGQQIHGRILKNGESIAKNEYIET 119

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
           KLV+FY+KCD  ++A+RLF +L+V+N FSWAAI+GL  R+G +++AL+GF EM E G+  
Sbjct: 120 KLVIFYSKCDESEIANRLFGKLQVQNEFSWAAIMGLKSRMGFNQEALMGFREMHEYGLLL 179

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           DNFV+P   KA GAL W+GFG++VH YV+K+G  GC++VA+SL+DMYGKCG  EEA+KVF
Sbjct: 180 DNFVIPIAFKASGALRWIGFGKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVF 239

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D ++ +N+VAWNSMIV + QNGLN EA+  FYEM +EGV PT+V+++S LSASANL  +D
Sbjct: 240 DKILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVID 299

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           EGKQ HA+AV++G+EL N+LGSS+INFYSKVGL+EDAE+VFS M+E+D VTWNLL++ YV
Sbjct: 300 EGKQGHALAVLSGLELTNILGSSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLVSGYV 359

Query: 361 QSG----------------------------------------------------QSDVV 368
            +G                                                    +SDV 
Sbjct: 360 HNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVA 419

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           VASSI+DMYAKCE+++ A++VF++   RD+++WNTLLAAYA+ G SGE  +LFYQMQLEG
Sbjct: 420 VASSIIDMYAKCEKLECARRVFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEG 479

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
           + PN+ISWNSVILG L  G++++AKD F++MQSLG+ PNLITWTTLI GL QN  G+EA 
Sbjct: 480 LPPNVISWNSVILGLLNKGKVDQAKDTFMEMQSLGICPNLITWTTLICGLAQNGLGDEAF 539

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
           L FQ M E GIKP++ +I+  LSAC+ +ASL +GRAIH Y+ RH+L + TP++ SLV+MY
Sbjct: 540 LTFQSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYITRHELSVSTPVLCSLVNMY 599

Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
           AKCG+I+QAKRVFD+   KELPVYNAMISGYA+HG AVEAL+LF+ L+++ I PD ITFT
Sbjct: 600 AKCGSINQAKRVFDMILKKELPVYNAMISGYALHGQAVEALSLFRRLKEECIKPDEITFT 659

Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
           +IL+AC HAGLV EGLELF+ M S+H++    EH+GC+V++LSR  NLDEALR+IL MP 
Sbjct: 660 SILSACGHAGLVREGLELFIDMVSNHKIVAQAEHYGCLVSILSRSHNLDEALRIILGMPF 719

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
           +PDA I GSLL+ C +  + EL E + E LL+LEPDN GNYVALSNAYAA+G W+E S+V
Sbjct: 720 EPDAFIFGSLLAACREHPDFELKERLFERLLKLEPDNSGNYVALSNAYAATGMWDEASKV 779

Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
           R +MKE+ L K PG S IQIG + HVF A D+SH +T+EIY  LALL + ++  
Sbjct: 780 RGLMKERSLSKIPGHSLIQIGNKTHVFFAGDKSHSRTKEIYMMLALLRVEMQFT 833


>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
          Length = 807

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/795 (57%), Positives = 594/795 (74%), Gaps = 56/795 (7%)

Query: 37  DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMY 96
           D +   L  SYFH++SSL K  +IREA+ L+TEM  RN +IGPEIYGE+LQGCVY+RD+ 
Sbjct: 4   DQARIPLSTSYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLC 63

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           TGQQIHA+ILK GDF+ARNEY+ETKLV+FYAKCDAL++A  LF +LRV+NVFSWAAIIG+
Sbjct: 64  TGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGV 123

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
            CR+GL E AL+GFVEM E+G+ PDNFV+PNV KACGAL W  FGR VHGYV K G   C
Sbjct: 124 KCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHC 183

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VFVASSL DMYGKCG L++ARKVFD +  RN VAWN+++VGYVQNG+ EEAIR+  EM  
Sbjct: 184 VFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRK 243

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           EG+EPTRV+V++ LSASAN+  ++EGKQ+HA+A++NG+ELDN+LG+SI+NFY KVGL+E 
Sbjct: 244 EGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEY 303

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG--------------------------------- 363
           AE++F  M+E+D+VTWNLLI+ YVQ G                                 
Sbjct: 304 AEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATS 363

Query: 364 -------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                              +SD+V+AS+ VDMYAKC  I NAK+VF+S + +D++LWNTL
Sbjct: 364 TQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTL 423

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           L+AYAD G SGEA RLFY+MQLE + PN+I+WN +IL  LRNGQ+NEAK+MFLQMQS G+
Sbjct: 424 LSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGI 483

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
            PNLI+WTT+++GL QN C  EAILF ++M E+G++P+  TIT ALSAC ++ASL  GR+
Sbjct: 484 FPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACVNLASLHFGRS 543

Query: 525 IHGYLIR-HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
           IHGY+IR         I TSLVDMYAKCG+I++A+RVF      ELP+YNAMIS YA++G
Sbjct: 544 IHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYG 603

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
              EA+ L+++L+  G+ PD+IT T++L+AC++   VN+ +E+F  M S H +KP +EH+
Sbjct: 604 KVREAITLYRSLEDGGVKPDNITITSLLSACNYGRDVNQAIEVFRDMVSKHGMKPCLEHY 663

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
           G +V+LL+  G  D+ALR++  MP  PDA ++ SL  +C K ++TEL EY+S+HLL+ EP
Sbjct: 664 GLMVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEP 723

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI-GEE--LHVFVACDR 760
           DN GNYV +SNAYA  G W+EV+++R++MK KGL+K PGCSWIQI GEE  +HVFVA D+
Sbjct: 724 DNSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIKGEEEGVHVFVANDK 783

Query: 761 SHPKTEEIYATLALL 775
           +H + +EI   LALL
Sbjct: 784 THLRNDEIQRMLALL 798


>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/831 (55%), Positives = 609/831 (73%), Gaps = 67/831 (8%)

Query: 1   MASFTFTTPP-NPKFS-HTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEK 58
           MAS  F T P N  FS  +KP      S+ H       D +      SYFH++SSL K  
Sbjct: 1   MASLPFNTIPINLPFSVSSKPS-----SKQH------DDQALNPSSTSYFHRVSSLCKNG 49

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           +I+EA+ L+TEM  RN +IGPEIYGE+LQGCVY+RD+ TG+QIHARILKNGDF+A+NEY+
Sbjct: 50  EIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYI 109

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
           ETKLV+FYAKCDALD+A  LF +LRV+NVFSWAAIIG+ CR+GL E AL+GFVEM E+ +
Sbjct: 110 ETKLVIFYAKCDALDIAEVLFTKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEI 169

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
            PDNFV+PNV KACGAL W  FGR VHGYV+K G + CVFVASSL DMYGKCG L++ARK
Sbjct: 170 FPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARK 229

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VFD +  RNVVAWN+++VGYVQNG+NEEAIR+F +M  EGVEPTRV+V++ LSASAN+  
Sbjct: 230 VFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGG 289

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           ++EGKQ+HA+A++NG+ELDN+LG+S++NFY KVGL+E AE+VF RM+++D+VTWNL+I+ 
Sbjct: 290 VEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLIISG 349

Query: 359 YVQSG----------------------------------------------------QSD 366
           YVQ G                                                    +SD
Sbjct: 350 YVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSFESD 409

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
           +V+AS+++DMYAKC  I +AK+VF+S   +D++LWNTLLAAYA+ G SGE  RLFY MQL
Sbjct: 410 IVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYAESGLSGEGLRLFYGMQL 469

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
           EG+ PN+I+WN +IL  LRNG+++EAKDMFLQMQS G+ PNLI+WTT+++G+ QN C  E
Sbjct: 470 EGVPPNVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIFPNLISWTTMMNGMVQNGCSEE 529

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPIVTSLV 545
           AILF ++M E+G++P+  +IT ALSAC ++ASL  GR+IHGY+IR+        I TSLV
Sbjct: 530 AILFLRKMQESGLRPNAVSITVALSACANLASLHFGRSIHGYIIRNLQHSSSVSIETSLV 589

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           DMYAKCG+I++A++VF      ELP+YNAMIS YA++G   EA+AL+++L+  G+ PD+I
Sbjct: 590 DMYAKCGDINKAEKVFGSKLYSELPLYNAMISAYALYGNLKEAIALYRSLEGVGLKPDNI 649

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           T TN+L+AC+HAG  N+  E+   M S H + P +EH+G +V+LL+  G  D+ALR+I  
Sbjct: 650 TITNVLSACNHAGDNNQATEIVTEMVSKHGMNPCLEHYGLMVDLLASAGQTDKALRLIEE 709

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MP  PDA +I SL+++C K  ++EL +Y+S  L++ EPDN GNYV +SNAYA  G W+EV
Sbjct: 710 MPYKPDARMIQSLVASCNKQPKSELVDYLSRQLIESEPDNSGNYVTISNAYAVEGSWDEV 769

Query: 726 SQVRDIMKEKGLRKNPGCSWIQI-GEELHVFVACDRSHPKTEEIYATLALL 775
            ++R+IMK KGL+K PGCSWIQI GE +HVFVA D++H +  EI   LALL
Sbjct: 770 VKMREIMKAKGLKKKPGCSWIQIKGEGVHVFVANDKTHIRINEIQRILALL 820


>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g55740, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
 gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 830

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/830 (55%), Positives = 608/830 (73%), Gaps = 64/830 (7%)

Query: 1   MASFTFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQI 60
           MAS  F T PN K   +   KP   S  H  +   S +S      SYFH++SSL K  +I
Sbjct: 1   MASLPFNTIPN-KVPFSVSSKP---SSKHHDEQAHSPSS-----TSYFHRVSSLCKNGEI 51

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           +EA+ L+TEM  RN +IGPEIYGE+LQGCVY+RD+ TG+QIHARILKNGDF+ARNEY+ET
Sbjct: 52  KEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIET 111

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
           KLV+FYAKCDAL++A  LF +LRV+NVFSWAAIIG+ CR+GL E AL+GFVEM E+ + P
Sbjct: 112 KLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFP 171

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           DNFV+PNV KACGAL W  FGR VHGYV+K G + CVFVASSL DMYGKCG L++A KVF
Sbjct: 172 DNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVF 231

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D +  RN VAWN+++VGYVQNG NEEAIR+F +M  +GVEPTRV+V++ LSASAN+  ++
Sbjct: 232 DEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVE 291

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           EGKQ+HA+A++NGMELDN+LG+S++NFY KVGL+E AE+VF RM E+D+VTWNL+I+ YV
Sbjct: 292 EGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYV 351

Query: 361 QSG----------------------------------------------------QSDVV 368
           Q G                                                    +SD+V
Sbjct: 352 QQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIV 411

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           +AS+++DMYAKC  I +AK+VF+S + +D++LWNTLLAAYA+ G SGEA RLFY MQLEG
Sbjct: 412 LASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEG 471

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
           + PN+I+WN +IL  LRNGQ++EAKDMFLQMQS G+ PNLI+WTT+++G+ QN C  EAI
Sbjct: 472 VPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAI 531

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPIVTSLVDM 547
           LF ++M E+G++P+  +IT ALSAC  +ASL  GR IHGY+IR+        I TSLVDM
Sbjct: 532 LFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDM 591

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           YAKCG+I++A++VF      ELP+ NAMIS YA++G   EA+AL+++L+  G+ PD+IT 
Sbjct: 592 YAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITI 651

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
           TN+L+AC+HAG +N+ +E+F  + S   +KP +EH+G +V+LL+  G  ++ALR+I  MP
Sbjct: 652 TNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMP 711

Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
             PDA +I SL+++C K  +TEL +Y+S  LL+ EP+N GNYV +SNAYA  G W+EV +
Sbjct: 712 FKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVK 771

Query: 728 VRDIMKEKGLRKNPGCSWIQI-GEE-LHVFVACDRSHPKTEEIYATLALL 775
           +R++MK KGL+K PGCSWIQI GEE +HVFVA D++H +  EI   LALL
Sbjct: 772 MREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEIQMMLALL 821


>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
          Length = 794

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/786 (57%), Positives = 590/786 (75%), Gaps = 57/786 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SYFH++SSL K  +IREA+ L+TEM  RN +IGPEIYGE+LQGCVY+RD+ TGQQIHA+I
Sbjct: 1   SYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQI 60

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LK GDF+ARNEY+ETKLV+FYAKCDAL++A  LF +LRV+NVFSWAAIIG+ CR+GL E 
Sbjct: 61  LKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEG 120

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL+GFVEM E+G+ PDNFV+PNV KACGAL W  FGR VHGYV K G   CVFVASSL D
Sbjct: 121 ALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLAD 180

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MYGKCG L++ARKVFD +  RN VAWN+++VGYVQNG+NEEAIR+  EM  EG+EPTRV+
Sbjct: 181 MYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVT 240

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           V++ LSASAN+  ++EGKQ+HA+A++NG+ELDN+LG+SI+NFY KVGL+E AE++F  M+
Sbjct: 241 VSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMI 300

Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
           E+D+VTWNLLI+ YVQ G                                          
Sbjct: 301 EKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKE 360

Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                     +SD+V+AS+ VDMYAKC  I NAK+VF+S + +D++LWNTLL+AYAD G 
Sbjct: 361 IQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGL 420

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
           SGEA RLFY+MQLE + PN+I+WN +IL  LRNGQ+NEAK+MFLQMQS G+ PNLI+WTT
Sbjct: 421 SGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTT 480

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-H 532
           +++GL QN C  EAILF ++M E+ ++P+  TIT ALSAC ++ASL  GR+IHGY+IR  
Sbjct: 481 MMNGLVQNGCSEEAILFLRKMQESRLRPNAFTITVALSACANLASLHFGRSIHGYIIRNQ 540

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
                  I TSLVDMYAKCG+I++A+RVF      ELP+YNAMIS YA++G   EA+ L+
Sbjct: 541 QYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLY 600

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           ++L+  G+ PD+IT T++L +C++   VN+ +E+F  M S H +KP +EH+G +V+LL+ 
Sbjct: 601 RSLEDGGVKPDNITITSLL-SCNYGRDVNQAIEVFSDMVSKHGMKPCLEHYGLMVDLLAS 659

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G  D+ALR++  MP  PDA ++ SL  +C K ++TEL EY+S+HLL+ EPDN GNYV +
Sbjct: 660 AGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEPDNSGNYVMI 719

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI-GEE--LHVFVACDRSHPKTEEIY 769
           SNAYA  G W+EV+++R++MK KGL+K PGCSWIQI GEE  +HVFVA D++H + +EI 
Sbjct: 720 SNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIKGEEEGVHVFVANDKTHLRNDEIQ 779

Query: 770 ATLALL 775
             LALL
Sbjct: 780 RMLALL 785


>gi|347954454|gb|AEP33727.1| chlororespiratory reduction 21 [Arabis hirsuta]
          Length = 824

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/796 (57%), Positives = 597/796 (75%), Gaps = 57/796 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SYFH++SSL K  +IREA+ L+TEM  RN +IGPEI+GE+LQGCVY RD+ TGQQIHARI
Sbjct: 29  SYFHRVSSLCKNGEIREALSLVTEMDFRNLRIGPEIFGEILQGCVYXRDLRTGQQIHARI 88

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LKNGDF+ARNEY+ETKLV+FYAKCDAL+VA  LF +LRV+NVFSWAAIIG+ CR+GL E 
Sbjct: 89  LKNGDFYARNEYIETKLVIFYAKCDALEVAEVLFSKLRVRNVFSWAAIIGVKCRIGLVEG 148

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL+GFVEM E+G+ PDNFV+PNV KACGAL W  FGR VHGYV K G   CVFVASSL D
Sbjct: 149 ALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLAD 208

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MYGKCG L++ARKVFD +  RNVVAWN+++VGYVQNG+NEEAIR+  +M  EGVEPTRV+
Sbjct: 209 MYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGVEPTRVT 268

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           V++ LSASAN+  ++EGKQ+HA+A++NG+ELDN+LG+SI+NFY KVGL++ AE++F RM+
Sbjct: 269 VSTCLSASANMRGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIDYAEMIFDRMI 328

Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
           E+D+VTWNLLI+ YV  G                                          
Sbjct: 329 EKDVVTWNLLISGYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAARTQNLKLGKE 388

Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                     +SD+V+AS+ VDMYAKC  + +AK+VF+S + +D++LWNTLLAAYA+ G 
Sbjct: 389 VQCYCIRHSFESDIVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWNTLLAAYAESGL 448

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
           SGEA RLFY+MQLE + PN+I+WN +IL  LRNGQ+NEAK+MFLQMQS G  PN+I+WTT
Sbjct: 449 SGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGTFPNMISWTT 508

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +++GL QN C  EAILF ++M E+G++P+  +IT ALSAC ++ASL  GR+IHGY+IR+ 
Sbjct: 509 MMNGLVQNGCSEEAILFLRKMQESGMRPNVFSITVALSACVNLASLHFGRSIHGYIIRNQ 568

Query: 534 L-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
                  I TSLVDMYAKCG+I++A+RVF      ELP+YNAMIS YA++G   EA+AL+
Sbjct: 569 QHSSSASIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAVALY 628

Query: 593 KNLQQK-GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           ++L++  GI PD+IT TN+L+AC+HAG +N+ +E+F  M S H +KP +EH+G +V+LL+
Sbjct: 629 RSLEEDVGIKPDNITITNVLSACNHAGDINQAIEIFTDMVSKHGMKPCLEHYGLMVDLLA 688

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK-SNETELAEYISEHLLQLEPDNPGNYV 710
             G  ++AL +I  MP  PDA +I SL+++C K  +++EL +Y+S  LL+ EP+N GNYV
Sbjct: 689 SAGETEKALSLIEEMPYKPDARMIQSLVASCKKQQHKSELMDYLSSQLLESEPENSGNYV 748

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI-GEE-LHVFVACDRSHPKTEEI 768
            +SNAYA  G W+EV ++R++MK KGL+K PGCSWIQ+ GEE +HVFVA D +H +  EI
Sbjct: 749 RVSNAYAVEGSWDEVVKMREMMKVKGLKKKPGCSWIQVKGEEGVHVFVANDNTHLRNNEI 808

Query: 769 YATLALLGMHVRLVSK 784
              LALL   +R  SK
Sbjct: 809 RKILALLLYDMRSDSK 824


>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
          Length = 829

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/811 (56%), Positives = 598/811 (73%), Gaps = 58/811 (7%)

Query: 22  PLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEI 81
           P+KLS T  +     D +      SYFH++SSL K+ +IREA+ L+TEM  RN +IGPEI
Sbjct: 9   PMKLSTTKASN-HHDDEAGNPPSISYFHRVSSLCKKGEIREALGLVTEMGSRNVRIGPEI 67

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           YGE+LQGCVY+RD+ TGQQIHARILKNGDF+A+NEY+ETKLV+FYAKCDAL+VA  LF +
Sbjct: 68  YGEILQGCVYERDLSTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSK 127

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           LR +NVFSWAAIIG+ CR+GL E AL+GFVEM E+G+ PDNFV+PNV KACGAL W  FG
Sbjct: 128 LRARNVFSWAAIIGVRCRIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFG 187

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R VHGYV K G   CVFVASSL DMYGKCG L++ARKVFD +  R VVAWN+++VGYVQN
Sbjct: 188 RGVHGYVAKAGLHDCVFVASSLADMYGKCGLLDDARKVFDEIPDRTVVAWNALMVGYVQN 247

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G+N+EAIR+   M  EG+EPTRV+V++ LSASAN+  ++EGKQ+HA+A++NG+ELDN+LG
Sbjct: 248 GMNQEAIRLLSAMRNEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILG 307

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------Q 364
           +SI+NFY KVGL+E AE++F RM+E+D+VTWNLLI+ YVQ G                  
Sbjct: 308 TSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRRGNLN 367

Query: 365 SDVVVASSI-----------------------------------VDMYAKCERIDNAKQV 389
            D V  SS+                                   V+MYAKC  I +AK+V
Sbjct: 368 FDCVTLSSLMSAAARTHNLKLGKEVQCYCIRHGFVSDIVLASTAVEMYAKCGSIVDAKKV 427

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           FNS + +D++LWNTLLAAYA+ G SGEA RLFY+MQLEG+ PN+I+WNSVIL  LRNGQ+
Sbjct: 428 FNSTVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLEGVPPNVITWNSVILSLLRNGQV 487

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           NEAKDMFLQMQS G+ PNLI+WTT+++GL QN C  EAI++ ++M E+G++ +  +IT A
Sbjct: 488 NEAKDMFLQMQSSGISPNLISWTTMMNGLVQNGCSEEAIVYLRKMQESGLRLNVFSITVA 547

Query: 510 LSACTDVASLRNGRAIHGYLIRHD-LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
           LSAC ++ASL  GR+IHGY+IR+        I TSLVDMYAKCG+I +A+RVF      E
Sbjct: 548 LSACANLASLHFGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGDISKAERVFGSKLYSE 607

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQK-GIDPDSITFTNILNACSHAGLVNEGLELF 627
           LP+YNAMIS YA++G   EA AL+++L +  GI+PD+IT TN+L+AC HAG +N+ + +F
Sbjct: 608 LPLYNAMISAYALYGNVKEATALYRSLDEDVGIEPDNITITNVLSACHHAGDINQAIHIF 667

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             M S H +KP +EH+G +V+LL+  G  ++ALR+I  MP  PDA +I SLL++C K ++
Sbjct: 668 TDMVSKHAMKPCLEHYGLMVDLLASAGETEKALRLIEEMPYKPDARMIQSLLASCNKQHK 727

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
           +EL EY+S HLL+ EP+N GNYV +SN YA  G W+EV ++R++MK KGL+K PGCSWIQ
Sbjct: 728 SELVEYLSRHLLESEPENSGNYVTISNVYAVEGSWDEVGKMREMMKVKGLKKKPGCSWIQ 787

Query: 748 I-GEE--LHVFVACDRSHPKTEEIYATLALL 775
           I GEE  +HVFVA D++H +  EI   LALL
Sbjct: 788 IKGEEQGVHVFVANDKTHFRNNEIRRILALL 818


>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
          Length = 830

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/825 (54%), Positives = 604/825 (73%), Gaps = 64/825 (7%)

Query: 6   FTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVD 65
           F T P+ K  ++   KP   S  H       D +      SYFH++SSL K  +I+EA+ 
Sbjct: 6   FNTIPS-KLPYSVSTKP---SSKH-----HDDQALNPSSTSYFHRVSSLCKNGEIKEALS 56

Query: 66  LLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVF 125
           L+T+M  RN +IGPEIYGE+LQGCVY+RD+ TG+QIHARILKNGDF+A NEY+ETKLV+F
Sbjct: 57  LVTKMDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAGNEYIETKLVIF 116

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           YAKCDAL++A  LF +LRV+NVFSWAAIIG+ CR+GL E AL+GFVEM E+ + PDNFV+
Sbjct: 117 YAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVV 176

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
           PNV KACGAL W  FGR VHGYV+K G + CVFVASSL DMYGKCG L++ARKVFD +  
Sbjct: 177 PNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPE 236

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           RNVVAWN+++VGYVQNG+NEEAIR+  +M  +GVEP+RV+V++ LSASAN+  + EGKQ+
Sbjct: 237 RNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAEGKQS 296

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-- 363
           HA+A++NG+ELDN+LG+S++NFY KVGL+E AE++F RM ++D+VTWNLLI+ YVQ G  
Sbjct: 297 HAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGYVQQGLV 356

Query: 364 --------------------------------------------------QSDVVVASSI 373
                                                             +SD+V+AS  
Sbjct: 357 EDAIYMCQLMRLENLKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLESDIVLASIT 416

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           +DMYAKC  I +AK+VF+S + +D++LWNTLLAAYA+ G SGEA RLFY+MQLE + PN+
Sbjct: 417 MDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNV 476

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
           I+WN +IL  LRNG++NEAK+MFLQMQS G+ PNLI+WTT+++G+ QN C  EAILF ++
Sbjct: 477 ITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAILFLRK 536

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPIVTSLVDMYAKCG 552
           M ++G++P+  +IT ALSA  ++ASL  GR+IHGY++R+        I TSLVDMYAKCG
Sbjct: 537 MQDSGLRPNAFSITVALSASANLASLHFGRSIHGYIVRNLQHSSSVSIETSLVDMYAKCG 596

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           +I++A+RVF      ELP+YNAMIS YA++G   EA+ L+++L+  G  PD+ITFT++L+
Sbjct: 597 DINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAITLYRSLEDMGNKPDNITFTSLLS 656

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           AC+H G +N+ +E+F  M S H VKP +EH+G +V+LL+  G  D AL++I  MP  PDA
Sbjct: 657 ACNHVGDINQAIEIFTDMVSKHGVKPCLEHYGLMVDLLASAGETDRALKLIEEMPYKPDA 716

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            +I SL+++C K +++EL EY S HLL+ EP+N GNYV +SNAYA  G W+EV ++RD+M
Sbjct: 717 RMIQSLVASCNKQHKSELVEYFSRHLLESEPENSGNYVTISNAYAVEGSWDEVVKMRDMM 776

Query: 733 KEKGLRKNPGCSWIQI-GEE-LHVFVACDRSHPKTEEIYATLALL 775
           K KGL KNPGCSWIQI GEE +HVFVA D++H + +EI   +ALL
Sbjct: 777 KAKGLTKNPGCSWIQIKGEEGVHVFVANDKTHIRKDEIQRIIALL 821


>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
          Length = 811

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/786 (56%), Positives = 591/786 (75%), Gaps = 56/786 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SYFH++SSL K  +I+EA+ L+TEM  RN +IGPEIYGE LQGCVY+RD+ TG+QIHARI
Sbjct: 17  SYFHRVSSLCKNGEIKEALSLVTEMDFRNXRIGPEIYGEXLQGCVYERDLSTGKQIHARI 76

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LKNGDF+ARNEY+ETKLV+FYAKCDAL+ A  +F +LRV+NVFSWAAIIG+ CR+GL E 
Sbjct: 77  LKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVRNVFSWAAIIGVKCRIGLCEG 136

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL+GFVEM E+ + PDNFV+PNV KACGAL W  FGR VHGYV+K G + CVFVASSL D
Sbjct: 137 ALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVFVASSLAD 196

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MYGKCG L++ARKVFD +  RNVVAWN+++VGYVQNG+NEEAIR+F +M  EGVEPTRV+
Sbjct: 197 MYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVT 256

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           V++ LSASAN+  ++EGKQ+HA+A++NG+ELDN+LG+S++NFY KVGL+E AE+VF RM 
Sbjct: 257 VSTCLSASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMF 316

Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
           ++D+VTWNLLI+ YVQ G                                          
Sbjct: 317 DKDVVTWNLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTENLKFGKE 376

Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                      +D+V+AS+ +DMYAKC  I +AK+VF+S + +D++LWNTLLAAYA  G 
Sbjct: 377 VQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAQSGL 436

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
           SGEA RLFY+MQLE + PN+I+WN +IL  LRNG++NEAK+MFLQMQS G+ PNLI+WTT
Sbjct: 437 SGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTT 496

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH- 532
           +++G+ QN C  EAILF ++M E+G++P+  +IT ALSA  ++ASL  GR+IHGY+IR+ 
Sbjct: 497 MMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSASANLASLHFGRSIHGYIIRNL 556

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
                  I TSLVDMYAKCG+I++A+RVF      ELP+YNAMIS YA++G   EA+AL+
Sbjct: 557 RHSSSVSIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAIALY 616

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           ++L+  GI PDS+TFT++L+AC+HAG +++ + +F  M   H + P +EH+G +V+LL+ 
Sbjct: 617 RSLEDMGIKPDSVTFTSLLSACNHAGDIDQAVGVFTAMVLKHGMTPCLEHYGLMVDLLAS 676

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G  ++A+R+I  MP  PDA +I SL+++C K ++TEL EY+S HLL+ EP+N GNYV +
Sbjct: 677 AGETEKAIRLIEEMPYKPDARMIQSLVASCNKQHKTELVEYLSRHLLESEPENSGNYVTI 736

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI-GEE--LHVFVACDRSHPKTEEIY 769
           SNAYA  G W+EV ++R++MK KGL+K PGCSWIQI GEE  +HVFVA D +H + + I 
Sbjct: 737 SNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQIKGEEEGVHVFVANDXTHIRNDXIQ 796

Query: 770 ATLALL 775
             LALL
Sbjct: 797 RILALL 802


>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
          Length = 826

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/838 (53%), Positives = 610/838 (72%), Gaps = 66/838 (7%)

Query: 1   MASFTFTTPPNP-KFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQ 59
           MAS  F T P     + TKP K       H      S +S      SYFH++SSLSK  +
Sbjct: 1   MASLPFNTMPIILPLTATKPSK-------HHDAQAHSPSS-----ASYFHRVSSLSKSGE 48

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           IREA+ LLTEM  R  +IGPEIYGE+LQGCVY+RD+ TG+QIHARILKNGDF+A+NEY+E
Sbjct: 49  IREALSLLTEMDFRKLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIE 108

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           TKLV+FYAKCDA + +  LF +LRV+NV+SWAAIIG+ CR+GL E+AL+GFVEM ++ + 
Sbjct: 109 TKLVIFYAKCDAFEASEVLFSKLRVRNVYSWAAIIGVKCRIGLCEEALMGFVEMLQNEIF 168

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           PDNFV+PNV KACGAL W  FGR VHGYV+K G   CVFVASSL DMYGKCG L++ARKV
Sbjct: 169 PDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKV 228

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD +  RNVVAWN+++VGYVQNG+NEEAIR+  +M  EG+EPTRV+V++ LSASAN+D +
Sbjct: 229 FDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGI 288

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
           +EGKQ+HA+A++NG+ELDN+LG+S +NFY KVGL+E AE++F RM+E+D+VTWNLLI+ Y
Sbjct: 289 EEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGY 348

Query: 360 VQSG----------------------------------------------------QSDV 367
           VQ G                                                     SD+
Sbjct: 349 VQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFASDI 408

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           V+AS+ VDMYA C  I +AK+VF+S++ +D++LWNTLL+ YA+ G SGEA RLFY+MQLE
Sbjct: 409 VLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSGEAFRLFYEMQLE 468

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
            + PN I+WN +IL FLRNGQ+NEAK++F QMQS G+ PNL++WTT+++GL QN C  EA
Sbjct: 469 SVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSSGIFPNLVSWTTMMNGLVQNGCSEEA 528

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV-TSLVD 546
           ILF ++M E+G++P+  +IT ALSAC+++ASL  GR++HGY+IR+     + ++ TSLVD
Sbjct: 529 ILFLRKMQESGLRPNAFSITVALSACSNLASLHFGRSVHGYIIRNQQHSSSVLIETSLVD 588

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MYAKCG+I++A+ VF      +LP+YNAMIS YA++G   EA+AL + L+  GI PD+IT
Sbjct: 589 MYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALNGNVKEAIALCRRLEDTGIKPDNIT 648

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           FT++L+AC+HAG V++ +E+F  M S H +KP +EH+G +V++L+  G  D+ALR+I  M
Sbjct: 649 FTSLLSACNHAGDVSQAVEIFTDMVSKHGIKPCLEHYGLMVDILASAGETDKALRLIEEM 708

Query: 667 PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726
           P   DA +I SL+++C   ++TEL +++S HLL+ EP+N GNYV +SNAYA  G W+EV 
Sbjct: 709 PYKSDARMIQSLVASCNMKHKTELMDFLSRHLLETEPENSGNYVTISNAYAVEGSWDEVV 768

Query: 727 QVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSK 784
           + R++MK K L+K+PGCSWI+I   +HVFVA D++H + +EI + LALL   ++  SK
Sbjct: 769 KTREMMKAKRLKKSPGCSWIRIKGGVHVFVANDKTHLRNKEIRSILALLAYDMQTDSK 826


>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
          Length = 751

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/762 (60%), Positives = 569/762 (74%), Gaps = 66/762 (8%)

Query: 70  MKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129
           M+ +N +IGPE+YGELLQGCVY+R ++TG+QIHA+I+K G  FA NEY+ETKLV+FYAKC
Sbjct: 1   MELKNLRIGPEVYGELLQGCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKC 60

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
           D  + ++ LF R+R+KNVFSWAA+IGLNCR G  ++AL+GF EMQE+G+ PDNFVLPNVL
Sbjct: 61  DNPEASNSLFRRVRLKNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVL 120

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV 249
           KACG L W+  G+ VHG V       C +V         K       +K   GM  RN V
Sbjct: 121 KACGGLEWIRIGKVVHGLV------SCGYV--------WKMWGGGGCKKGVCGMPQRNAV 166

Query: 250 AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVA 309
           AWNSMIVGYVQNGLNEEAI VFYEM  EGVEPT+V+++S LSASANL AL +GKQ HA+A
Sbjct: 167 AWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDGKQGHAIA 226

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD--- 366
           VI G+E+   LGSS+INFYSKVGL+EDAE VFSRM+E+D+VTWNLLI+ YVQ G+ D   
Sbjct: 227 VICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKAL 286

Query: 367 ------------------VVVASSIVDM-------------------------------Y 377
                               + S+  DM                               Y
Sbjct: 287 NMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDVVVVSSIVDMY 346

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           AKCE+I  A++VFNS I +D++LWNT+LAA+A+LG SGEA  LFYQMQLE + PN+ISWN
Sbjct: 347 AKCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQLESVPPNVISWN 406

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           S+ILGFL +GQ+NEAKDMFLQMQSLGVQPNL+TWTTLISGL ++  G EAIL FQ M E 
Sbjct: 407 SLILGFLNSGQVNEAKDMFLQMQSLGVQPNLVTWTTLISGLARSGFGYEAILTFQRMQEA 466

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           G+KP+  +I   L AC ++ASL+ GRA+HGYLIRH L L  PI TSLVDMYAKCG+  QA
Sbjct: 467 GVKPNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLVDMYAKCGDRDQA 526

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           KRVFD+ P KELP+YNAMISG+A+HG AVEALAL++ L+++G+ PD+ITFTN L ACSHA
Sbjct: 527 KRVFDMIPDKELPIYNAMISGFALHGQAVEALALYRCLKEEGLKPDNITFTNALYACSHA 586

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
            +V+EGLELFV M S+H + PS+EH+GC+V+LLSRCG+LDEA  +I  MP  PD  I+GS
Sbjct: 587 MMVSEGLELFVDMVSNHNINPSIEHYGCMVSLLSRCGDLDEAFGLISAMPYKPDVQILGS 646

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           LL+ C + N+ EL EY+S  LL+L+PDN GNYVA+SNAYAA+GRW+EV +VR +MKE+GL
Sbjct: 647 LLAACREHNKIELEEYLSNQLLKLQPDNSGNYVAMSNAYAAAGRWDEVKKVRQLMKERGL 706

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           RK PGCSWIQ+GEEL+VFVA D+SHP+TEEIY TLALL M +
Sbjct: 707 RKIPGCSWIQVGEELNVFVAGDKSHPETEEIYTTLALLLMEI 748


>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
          Length = 788

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/788 (57%), Positives = 588/788 (74%), Gaps = 57/788 (7%)

Query: 54  LSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFA 113
           L K  +I+EA+ L+TEM  RN +IGPEIYGE+LQGCVY+RD +TGQQIHARILKNGDF+A
Sbjct: 1   LCKNGEIKEALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGQQIHARILKNGDFYA 60

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           +NEY+ETKLV+FYAKCDAL++A  LF +LRV+NVFSWAAIIG+ CR+GL E AL+GFVEM
Sbjct: 61  KNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRMGLVEGALMGFVEM 120

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
            +D + PDNFV+PNV KACGAL W GFGR VHGYV K G D CVFVASSL DMYGKCG L
Sbjct: 121 LKDEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVL 180

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           ++ARKVFD +  RNVVAWN+++VGYVQNG+NEEAIR+  +M  EGVEPTRV+V++ LSAS
Sbjct: 181 DDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSAS 240

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           AN+  ++EGKQ+HA+AV+NG+ELDN+LG+S++NFY KVGL+E AE+VF RMV +D+VTWN
Sbjct: 241 ANMGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVVTWN 300

Query: 354 LLIASYVQSG-------------------------------------------------- 363
           LLI+ YVQ G                                                  
Sbjct: 301 LLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRH 360

Query: 364 --QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
             +SD+V+AS+ VDMYAKC  I +AK+VF+S + +D++LWNTLLAAYA+ G SGEA RLF
Sbjct: 361 SFESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLF 420

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
           Y+MQLE + PN+I+WN +IL  LRNGQ++EAK MFLQMQS G+ P +++WTT+++GL QN
Sbjct: 421 YEMQLESVPPNVITWNLIILSLLRNGQVDEAKKMFLQMQSSGIVPTIVSWTTMMNGLVQN 480

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL-CLPTPI 540
            C  EAI + ++M E G++P+  +IT ALSAC ++ASL  GR++HGY+IR+ L      I
Sbjct: 481 GCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHSSSVSI 540

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
            TSLVDMYAKCG+I +A++VF      ELP+YNAMIS YA++G   EA+AL+++L   GI
Sbjct: 541 ETSLVDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVEEAMALYRSLDDMGI 600

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
            PD+ITFTNIL+AC+HAG +N+ +E+F  M S H VKP +EH+G +V+LL+  G  ++AL
Sbjct: 601 KPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLLASAGETEKAL 660

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
           R++  MP +PDA +I SLL+TC K ++TEL EY+S+ LL+ EPDN GNYV +SNAYA  G
Sbjct: 661 RLMEEMPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEPDNSGNYVTISNAYAVEG 720

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGE----ELHVFVACDRSHPKTEEIYATLALLG 776
            W+EV ++R++MK KGL+K PGCSWI++      E+ VFVA D++H +  EI   LALL 
Sbjct: 721 SWDEVVKMREMMKAKGLKKQPGCSWIRVKREEEEEVQVFVANDKTHLRNNEIRRMLALLL 780

Query: 777 MHVRLVSK 784
             +R  SK
Sbjct: 781 NDMRSDSK 788


>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
          Length = 805

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/784 (57%), Positives = 582/784 (74%), Gaps = 54/784 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SYFHQISSL K  +IREA+ L+ EM  RN +IGPEIYGE+LQGCVY+RD+ TGQQIHARI
Sbjct: 15  SYFHQISSLCKHGEIREALRLVKEMDFRNVRIGPEIYGEILQGCVYERDLCTGQQIHARI 74

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LKNG F+ARNEY+ETKL++FYAKCDAL+VA  LF RLRV+NVFSWAAIIGL CR+GL E 
Sbjct: 75  LKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRVRNVFSWAAIIGLKCRIGLCEG 134

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL+GFVEM E+GV PDN+V+PNV KACGAL W  FGR VHGYVLK G   CVFVASSL D
Sbjct: 135 ALLGFVEMLENGVLPDNYVVPNVCKACGALHWSWFGRGVHGYVLKAGLHDCVFVASSLAD 194

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MYGKCG L++AR VFD +  RNVVAWN+++VGYVQNG+NEEAIR+  +M  EG+EPTRV+
Sbjct: 195 MYGKCGVLDDARMVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVT 254

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           V++ LSASAN+  ++EGKQ+HA+A++NG+ELDN+LG+SI+NFY KVGL+E AE++F R++
Sbjct: 255 VSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRII 314

Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
            +DIVTWNLLI+ YVQ G                                          
Sbjct: 315 GKDIVTWNLLISGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAAARTQNLNLGKE 374

Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                     +S++V+ASS VDMYAKC  I +AK+VF S   +D++LWNTLLAAYAD G 
Sbjct: 375 VQCYSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWNTLLAAYADSGL 434

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
           SGEA +LFY M LE + PNII+WNS+IL FLRNGQ++EAK+MFLQMQS G+ PNLI+WTT
Sbjct: 435 SGEALKLFYDMLLESVPPNIITWNSIILSFLRNGQVDEAKEMFLQMQSSGIFPNLISWTT 494

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH- 532
           +++G  QN C  EAI+F ++M E+G++P+  TI+ ALSACT + SL  GR+IHGY+IR+ 
Sbjct: 495 MMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHLVSLNFGRSIHGYIIRNF 554

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
                    TSLVD+YAKCG+I+QA++VF      ELP++NAMIS YA++G   E++ L+
Sbjct: 555 QHSSSVSFETSLVDLYAKCGDINQAEKVFGNKLYDELPLHNAMISAYALYGNVKESITLY 614

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           + L+   + PD+ITFT++L AC+HAG + + + +F  M S H +KP +EH+G +V++L+ 
Sbjct: 615 RRLEDMAMKPDNITFTSLLYACTHAGDIVQAINIFTEMVSKHDMKPCLEHYGLMVDILAS 674

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G  ++AL +I  MP  PDA +I SL+++C K ++TEL +Y+S  LL+ EP+N GNYV +
Sbjct: 675 SGETNKALELIEEMPYKPDARMIQSLVASCNKQHKTELVDYLSRQLLESEPENSGNYVTI 734

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI-GEELHVFVACDRSHPKTEEIYAT 771
           SNAYA  G WNEV ++R++MK KGL+K PGCSWIQI GE +HVFVA D +H K +EI   
Sbjct: 735 SNAYAIEGSWNEVMKMREMMKAKGLKKKPGCSWIQIKGEGVHVFVANDMTHIKNDEIQRI 794

Query: 772 LALL 775
           LALL
Sbjct: 795 LALL 798


>gi|347954472|gb|AEP33736.1| chlororespiratory reduction 21, partial [Raphanus sativus]
          Length = 806

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/786 (56%), Positives = 589/786 (74%), Gaps = 57/786 (7%)

Query: 47  YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARIL 106
           YFH++SSL K  +IREA+ L+TEM  RN +IGPEIYGE+LQGCVY+RD +TG+QIHARIL
Sbjct: 12  YFHRVSSLCKNGEIREALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGRQIHARIL 71

Query: 107 KNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA 166
           KNG+F+A+NEY+ETKLV+FYAKCDA ++A  LF +LRV+NVFSWAAIIG+ CRVGL+E A
Sbjct: 72  KNGEFYAKNEYIETKLVIFYAKCDAHEIAETLFSKLRVRNVFSWAAIIGVKCRVGLAEGA 131

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG-CVFVASSLID 225
           L+GFVEM +D + PDNFV+PNV KACGAL W GFGR +HGYV K G  G CVFVASSL D
Sbjct: 132 LMGFVEMLKDEIFPDNFVVPNVCKACGALQWSGFGRGIHGYVAKSGLYGDCVFVASSLAD 191

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MYGKCG L++ARKVFD +  RNVVAWN+++VGYVQNG+NEEAIR+  +M  EGVEPTRV+
Sbjct: 192 MYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVT 251

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           V++ LSASAN+  + EGKQ+HAVAV+NG+E+DN+LG+S++NFY KVGL+E AE+VF RM+
Sbjct: 252 VSTCLSASANMCGVGEGKQSHAVAVVNGLEMDNILGTSVLNFYCKVGLIEYAEMVFDRMI 311

Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
            +D+VTWNLLI+ YVQ G                                          
Sbjct: 312 GKDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSAAARTQNSKLGKE 371

Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                     +SD+ +AS+++DMYAKC  I +AK+VF+S + +D++LWNTLLAAYA+ G 
Sbjct: 372 VQCYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTVQKDLILWNTLLAAYAESGL 431

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
           SGEA RLFY+MQLE + PN I+WN +IL   RNGQ++EAK+MFLQMQS G+ P L++WTT
Sbjct: 432 SGEALRLFYEMQLESVPPNAITWNLIILSLFRNGQVDEAKEMFLQMQSSGIVPTLVSWTT 491

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +++GL QN C  EA+ + ++M E+G++P+  +IT ALSAC ++ASL  GR++HGY+IR+ 
Sbjct: 492 MMNGLVQNGCSEEAVHYLRKMQESGLRPNVFSITVALSACANLASLHLGRSVHGYIIRNQ 551

Query: 534 L-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
           L      I T+L+DMYAKCG+I +A++VF      ELP++NAMIS YA+ G   EA+ L+
Sbjct: 552 LHSSSVSIETALIDMYAKCGDISKAEKVFKRKSYSELPLFNAMISAYALSGNVKEAIDLY 611

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           ++L+  GI PD+ITFTN+L+AC+HAG +N+ +E+F  M S H ++P +EH+G +V+LL+ 
Sbjct: 612 RSLEDMGIKPDNITFTNVLSACNHAGDINQAIEIFSDMVSKHGMEPCLEHYGLMVDLLAS 671

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G  ++ALR++  MP  PDA +I SLL TC + ++TEL +Y+S  LL+ EPDN GNYV +
Sbjct: 672 AGETEKALRLMEEMPYKPDARMIQSLLVTCNEEHKTELVDYLSRQLLESEPDNSGNYVTI 731

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG---EELHVFVACDRSHPKTEEIY 769
           SNAYA  G W+EV ++R++MK+KGL+K PGCSWIQI    EE+HVFVA D++H +  EI 
Sbjct: 732 SNAYAGEGSWDEVVKMREMMKDKGLKKKPGCSWIQIKGXXEEVHVFVANDKTHLRNNEIR 791

Query: 770 ATLALL 775
             LALL
Sbjct: 792 RMLALL 797


>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
          Length = 784

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/780 (57%), Positives = 579/780 (74%), Gaps = 56/780 (7%)

Query: 37  DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMY 96
           D +   L  SYFH++SSL K  +IREA+ L+TEM  RN +IGPEIYGE+LQGCVY+RD+ 
Sbjct: 5   DQARIPLSTSYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLC 64

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           TGQQIHA+ILK GDF+ARNEY+ETKLV+FYAKCDAL++A  LF +LRV+NVFSWAAIIG+
Sbjct: 65  TGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGV 124

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
            CR+GL E AL+GFVEM E+G+ PDNFV+PNV KACGAL W  FGR VHGYV K G   C
Sbjct: 125 KCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHC 184

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VFVASSL DMYGKCG L++ARKVFD +  RN VAWN+++VGYVQNG+NEEAIR+  EM  
Sbjct: 185 VFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRK 244

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           EG+EPTRV+V++ LSASAN+  ++EGKQ+HA  ++NG+ LDN+LG+SI+NFY  VGL+E 
Sbjct: 245 EGIEPTRVTVSTCLSASANMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEY 304

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG--------------------------------- 363
           AE++F  M+E+  VTWNLLI+ YVQ G                                 
Sbjct: 305 AEMIFDGMIEKXXVTWNLLISGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATS 364

Query: 364 -------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                              +SD+V+AS+ VDMYAKC  I NAK+VF+S + +D++LWNTL
Sbjct: 365 TQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTL 424

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           L+AYAD G SGEA RLFY+MQLE + PN+I+WN +IL  LRNGQ+NEAK+MFLQMQS G+
Sbjct: 425 LSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGI 484

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
            PNLI+WTT+++GL QN C  EAILF ++M E+G++P+  TIT ALSAC ++ASL  GR+
Sbjct: 485 FPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACANLASLHFGRS 544

Query: 525 IHGYLIR-HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
           IHGY+IR         I TSLVDMYAKCG+I++A+RVF      ELP+YNAMIS YA++G
Sbjct: 545 IHGYIIRNQQYSFSAWIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYG 604

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
              EA+ L+++L+  G+ PD+IT T++L+AC++   VN+ +E+F  M S H +KP +EH+
Sbjct: 605 KVREAITLYRSLEDGGVKPDNITITSLLSACNYGRDVNQAIEVFSDMVSKHGMKPCLEHY 664

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
           G +V+LL+  G  D+ALR++  MP  PDA ++ SL  +C K ++TEL EY+S+HLL+ EP
Sbjct: 665 GLMVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEP 724

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI-GEE--LHVFVACDR 760
           DN GNYV +SNAYA  G W+EV+++R++MK KGL+K PGCSWIQI GEE  +HVFVA D+
Sbjct: 725 DNSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIKGEEEGVHVFVANDK 784


>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
          Length = 820

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/786 (56%), Positives = 586/786 (74%), Gaps = 56/786 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SYFH++SSL K  +I+EA+ L+TEM  RN +IGPEIYGE+LQGCVY+RD+ TG+QIHARI
Sbjct: 26  SYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARI 85

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LKNGD +ARNEY+ETKLV+FYAKCD L++A  LF +LRV+NVFSWAAIIG+ CR+GL E 
Sbjct: 86  LKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKLRVRNVFSWAAIIGVKCRMGLCEG 145

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL+GFVEM E+ + PDNFV+PNV KACGAL W  FGR VHGYVLK G + CVFVASSL D
Sbjct: 146 ALMGFVEMLENEIFPDNFVVPNVFKACGALQWSRFGRGVHGYVLKAGLEDCVFVASSLAD 205

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MYGKCG L++ARKVFD +  RNVVAWN+++VGYVQNG+NEEAIR+  +M  +GVEPTRV+
Sbjct: 206 MYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVT 265

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           V++ LSASAN+  ++EG Q HA+A++NG+ELDN+LG+S++NFY KVGL+E AE++F RM 
Sbjct: 266 VSTCLSASANMAGVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMF 325

Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
           E+D+VTWNLLI+ YVQ G                                          
Sbjct: 326 EKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKE 385

Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                     +SD+V+AS+ +DMYAKC  I +AK+VF+S + +D++LWNTLLAAYA+ G 
Sbjct: 386 VQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGH 445

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
           SGEA RLFY+MQLE + PN+I+WN +IL  LRN ++NEAK+MFLQMQS G+ PNLI+WTT
Sbjct: 446 SGEALRLFYEMQLESVPPNVITWNLIILSRLRNAEVNEAKEMFLQMQSSGITPNLISWTT 505

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH- 532
           +++G+ QN C  EAI F ++M E+G++P+  +IT ALSA  ++AS   GR+IHGY+IR+ 
Sbjct: 506 MMNGMVQNGCSEEAIHFLRKMQESGMRPNAFSITVALSASANLASXHFGRSIHGYIIRNL 565

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
                  I TSLVDMYAKCG+I++A+RVF+   S ELP+YNAMIS YA+ G   EA+AL+
Sbjct: 566 RHSSSASIETSLVDMYAKCGDINKAERVFESKLSNELPLYNAMISAYALXGNVTEAVALY 625

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           ++L+  G  PDSITFT++L+AC+HAG +++ + +F  M S+H VKP +EH+G +V+L + 
Sbjct: 626 RSLEDMGXKPDSITFTSLLSACNHAGDIDQAIRVFTDMVSNHGVKPCLEHYGLLVDLFAS 685

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
               D+ALR++  MP  PD  +I SL+++C K ++TEL +Y+S  LL+ EP+  GNYV +
Sbjct: 686 AKETDKALRLMEEMPYKPDXRMIQSLVASCNKQHKTELVDYLSRQLLETEPEXSGNYVTI 745

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI-GEE--LHVFVACDRSHPKTEEIY 769
           SNAYA  G W+EV + R++MK KGL+K PGCSWIQI GEE  +HVFVA D++H + +EI 
Sbjct: 746 SNAYAVEGSWDEVVKTREMMKAKGLKKKPGCSWIQIKGEEEGVHVFVANDKTHVRNDEIQ 805

Query: 770 ATLALL 775
             LALL
Sbjct: 806 RILALL 811


>gi|347954468|gb|AEP33734.1| chlororespiratory reduction 21, partial [Lepidium virginicum]
          Length = 788

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/781 (56%), Positives = 585/781 (74%), Gaps = 55/781 (7%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           Q+SSL K  +IREA+ L+ EM+ RN +IGPEIYGE+LQGCVY+RD+ TGQQIHARILKNG
Sbjct: 1   QVSSLCKHGEIREALRLVKEMEFRNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNG 60

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
           DF+ARN+Y+ETKL++FYAKCDA++VA  LF RLRV+NVFSWAAIIGL CR+GL E AL G
Sbjct: 61  DFYARNQYIETKLLIFYAKCDAIEVAQNLFSRLRVRNVFSWAAIIGLKCRIGLCEGALTG 120

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           FVEM E+GV PDN+V+PNV KACGAL W  FGR VHGY++K G   CVFVASSL DMYGK
Sbjct: 121 FVEMIENGVLPDNYVVPNVCKACGALQWTWFGRGVHGYLVKAGLHDCVFVASSLADMYGK 180

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG L +ARKVFD +  RNVVAWN+++VGYVQNG+NEEAIR+  +M  EG+EPTRV+V++ 
Sbjct: 181 CGVLNDARKVFDKIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTC 240

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           LSASAN+  ++EGKQ+HA+A++NG+E+DN+LG+SI+NFY KVGL+E AE++F RM+E+D+
Sbjct: 241 LSASANIRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDV 300

Query: 350 VTWNLLIASYVQSG---------------------------------------------- 363
           VTWNLLI+ YVQ G                                              
Sbjct: 301 VTWNLLISGYVQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTHNLKLGKEVQCY 360

Query: 364 ------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                 +S++V+AS+ VDMYAKC  I +AK+VF+S + +D++LWNTLLAAYAD G SGEA
Sbjct: 361 CIRHCFESEIVLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYADSGLSGEA 420

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            RLFY MQLE + PN+I+WNS+IL  LRNGQ++EAK+MFLQMQS G+ PNLI+WTT+++G
Sbjct: 421 LRLFYDMQLESVPPNMITWNSIILSLLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNG 480

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DLCL 536
           L QN C  EAI F ++M E+G++P++ +IT ALSAC  +ASL  GR+IHGY+IR+     
Sbjct: 481 LVQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAHLASLNFGRSIHGYIIRNLQHSS 540

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
               VTSLVDMYAKCG+I+QA++ F      ELP+YNAMIS YA++G   EA+AL++ L+
Sbjct: 541 SVSFVTSLVDMYAKCGDINQAEKAFGSKLYDELPLYNAMISAYALYGNMKEAIALYRRLE 600

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
              I PDSITFT++L+ACSHAG + + + +F  M S H +KP +EH+G +V+LL+  G  
Sbjct: 601 DMAIKPDSITFTSLLSACSHAGDIVQAINIFTEMVSKHGMKPCLEHYGLMVDLLASSGET 660

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           ++AL +I  MP  PDA +I SL+++  K ++TEL +Y+S+ LL+ EP+N GNYV +SNA+
Sbjct: 661 NKALELIKEMPYKPDARMIQSLVASNNKQHKTELVDYLSKQLLESEPENSGNYVTISNAF 720

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE--LHVFVACDRSHPKTEEIYATLAL 774
           A  G W+EV ++R++MK KGL+K PGCSWIQI  E  +H+FVA D++H K +EI   LAL
Sbjct: 721 AIEGSWDEVVKMREMMKAKGLKKKPGCSWIQIKGEXGVHLFVANDKTHIKNDEIQRILAL 780

Query: 775 L 775
           L
Sbjct: 781 L 781


>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Glycine max]
          Length = 805

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/784 (55%), Positives = 570/784 (72%), Gaps = 55/784 (7%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
             SSL K  +IREAV+ LT+M   N  +GP IYG LLQGCVY+R +    Q+HA ++K G
Sbjct: 22  HFSSLCKHGRIREAVNSLTQMHSLNLHVGPAIYGTLLQGCVYERALPLALQLHADVIKRG 81

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
             FA N++V +KLV+ YAKC A + A+RLF      NVFSWAAIIGL+ R G  E+AL G
Sbjct: 82  PTFALNDFVISKLVILYAKCGASEPATRLFRDSPSPNVFSWAAIIGLHTRTGFCEEALFG 141

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK-VGFDGCVFVASSLIDMYG 228
           +++MQ+DG+ PDNFVLPNVLKACG L WV FG+ VH +V+K +G   CV+VA+SL+DMYG
Sbjct: 142 YIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYG 201

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG +E+A KVFD M  RN V WNSM+V Y QNG+N+EAIRVF EM L+GVE T V+++ 
Sbjct: 202 KCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSG 261

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
             +A AN +A+ EG+Q H +AV+ G+ELDNVLGSSI+NFY KVGL+E+AEVVF  M  +D
Sbjct: 262 FFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKD 321

Query: 349 IVTWNLLIASYVQSG--------------------------------------------- 363
           +VTWNL++A Y Q G                                             
Sbjct: 322 VVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGMKAHA 381

Query: 364 -------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
                  + DVVV+S I+DMYAKC R+D A++VF+ +  +D+VLWNT+LAA A+ G SGE
Sbjct: 382 YCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQGLSGE 441

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           A +LF+QMQLE + PN++SWNS+I GF +NGQ+ EA++MF +M S GV PNLITWTT++S
Sbjct: 442 ALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSSGVMPNLITWTTMMS 501

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           GL QN  G+ A++ F+EM + GI+P++ +IT ALS CT +A L++GRAIHGY++R DL  
Sbjct: 502 GLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQ 561

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              I+TS++DMYAKCG++  AK VF +  +KEL VYNAMIS YA HG A EAL LFK ++
Sbjct: 562 SIHIITSIMDMYAKCGSLDGAKCVFKMCSTKELYVYNAMISAYASHGQAREALVLFKQME 621

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           ++GI PD IT T++L+ACSH GL+ EG+++F  M S+ Q+KPS EH+GC+V LL+  G L
Sbjct: 622 KEGIVPDHITLTSVLSACSHGGLMKEGIKVFKYMVSELQMKPSEEHYGCLVKLLANDGQL 681

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           DEALR ILTMP  PDAHI+GSLL+ C ++N+ ELA+YI++ LL+L+PDN GNYVALSN Y
Sbjct: 682 DEALRTILTMPSHPDAHILGSLLTACGQNNDIELADYIAKWLLKLDPDNSGNYVALSNVY 741

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLG 776
           AA G+W++VS +R +MKEKGLRK PGCSWI++G+ELHVF+A DRSHPKTEEIY TL LLG
Sbjct: 742 AAVGKWDKVSNLRGLMKEKGLRKIPGCSWIEVGQELHVFIASDRSHPKTEEIYVTLDLLG 801

Query: 777 --MH 778
             MH
Sbjct: 802 FEMH 805


>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
          Length = 732

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/716 (58%), Positives = 543/716 (75%), Gaps = 53/716 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SYFH++SSL K  +IREA+ L+TEM  R  +IGPEIYGE+LQGCVYKR++ TG+QIHARI
Sbjct: 17  SYFHRVSSLCKSGEIREALSLVTEMDFRKIRIGPEIYGEILQGCVYKRNLCTGKQIHARI 76

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LK GDF+ARNEY+ETKLV+FYAKCDAL++A  LF +LRV+NVFSWAAIIG+ CR+GL E 
Sbjct: 77  LKKGDFYARNEYIETKLVIFYAKCDALEIAELLFSKLRVRNVFSWAAIIGVKCRIGLVEG 136

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL+GFVEM E+G+ PDNFV+PNV KACGAL W  FGR VHGYV+K GF  CVFVASSL D
Sbjct: 137 ALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGFHDCVFVASSLAD 196

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MYGKCG L+EARKVFD +  RNVVAWN+++VGYVQNG+NEEAIR+F +M  EGVEPTRV+
Sbjct: 197 MYGKCGVLDEARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVT 256

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           V++ LSASAN+  ++EGKQ+HA+AV+NG+ELDN+LG+SI+NFY KVGL+E AE++F RMV
Sbjct: 257 VSTCLSASANMGGIEEGKQSHAIAVVNGLELDNILGTSILNFYCKVGLIECAEMIFDRMV 316

Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
           E+D+VTWNLLI+ YVQ G                                          
Sbjct: 317 EKDVVTWNLLISGYVQQGLVEDAIRMCQSMRLENLKFDCVTLSTLMSAAARTQDSKLGKE 376

Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                     +SD+V+AS+ VDMYAKC  I +AK+VF+S + +D++LWNTLL AYA+ G 
Sbjct: 377 VQSYCIRHSLESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLGAYAESGL 436

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
           SGEA RLFY+MQLE + PN+I+WN +IL  LRNGQ+NEAK+MFLQMQS G+ PNL++WTT
Sbjct: 437 SGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIIPNLVSWTT 496

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +++GL QN C  EAILF ++M E+G++P+  +IT ALSAC ++ASL  GR+IHGY+IR+ 
Sbjct: 497 MMNGLVQNGCSEEAILFLRKMQESGLRPNVFSITVALSACANLASLHYGRSIHGYIIRNQ 556

Query: 534 L-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
             C    I TSLVDMYAKCG+I++A+RVF      ELP+YNAMISG+A++G   EA+ L+
Sbjct: 557 RHCSSVSIETSLVDMYAKCGDINKAERVFRSKLYSELPLYNAMISGFAVYGNVKEAIGLY 616

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           ++L+  GI PDSITFT++L+AC+HAG +N+  E+F  M S H +KP +EH+G +V+LL+ 
Sbjct: 617 RSLEDMGIKPDSITFTSLLSACNHAGDINQAFEIFTDMVSKHGLKPCLEHYGLMVDLLAS 676

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
            G  D+ALR++  MP  PDA ++ SL +TC K ++ EL EY+S  LL+ EPDN GN
Sbjct: 677 AGETDKALRLMEEMPYKPDARMVQSLFATCKKQHKDELVEYLSRQLLESEPDNSGN 732


>gi|357516987|ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522804|gb|AET03258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1002

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/838 (52%), Positives = 584/838 (69%), Gaps = 69/838 (8%)

Query: 10  PNPKFSHTKPQKP-LKLSQTH------LTKLRESDNSYESLYKSYFHQISSLSKEKQIRE 62
           PNP+     P  P  +L  TH      +       N + +   +  HQIS L K  +++E
Sbjct: 28  PNPQCMACLPVTPKTQLLTTHSYSNPPILNHTPKHNFFPTTNTTLHHQISFLCKNLKLQE 87

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           A+  L+++  ++  IGP+IYGELLQGCVY RD+  G QIHA ++K G  ++ NE+VE+KL
Sbjct: 88  AISTLSQLP-QHTPIGPDIYGELLQGCVYARDLSLGLQIHAHLIKKGSSYSTNEFVESKL 146

Query: 123 VVFYAKCDALDVASRLFCRL-RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           V+ YAKC+   VA   F  + + +N+FS+AAI+GL  R GL ++AL+ +VEM E G  PD
Sbjct: 147 VILYAKCNLTRVAVHFFRNVVKNQNLFSYAAIVGLQARNGLYKEALLSYVEMMEKGFCPD 206

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVG--FDGCVFVASSLIDMYGKCGDLEEARKV 239
           NFV+PN LKACG L W+GFGR +HG+V+K+G  FDGCV+VA+SL+DMYGKCG LE+A KV
Sbjct: 207 NFVVPNGLKACGGLRWIGFGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKV 266

Query: 240 FDGMI--ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANL 296
           FD M    RN V WNSMIVGYVQNG+N EA+ +F +M  EG VEP+ VS++   SA ANL
Sbjct: 267 FDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEVSLSGFFSACANL 326

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLL 355
           +A++EGKQ HA+ ++ G EL+ VLGSSI+NFYSKVGL+E+ E+VF  M V +D VTWNL+
Sbjct: 327 EAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRSMAVLKDEVTWNLM 386

Query: 356 IASYVQSGQ--------------------------------------------------- 364
           I+SYVQ G                                                    
Sbjct: 387 ISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLGKKLHGFCIRNE 446

Query: 365 --SDVVVASSIVDMYAKCERIDNAKQVFN-SIILRDVVLWNTLLAAYADLGRSGEASRLF 421
             SD+ V S ++DMYAKC  +D A+ VF+ +   +D+VLWNT+LAA A+ G SGEA +LF
Sbjct: 447 FYSDMAVLSGVLDMYAKCGIMDCARGVFHFAGKKKDIVLWNTMLAACAEKGLSGEALKLF 506

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
           +QMQ+E + PN++SWNS+I GF RNGQ+ EA+DMF +MQ  GV PNLITWTT+ISGL QN
Sbjct: 507 FQMQMESVPPNVVSWNSLIFGFFRNGQVVEAQDMFSEMQLSGVTPNLITWTTMISGLAQN 566

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541
             G EA   FQ+M   G++P++ +IT ALSACT++A L  GR+IHGY++R+ +     I 
Sbjct: 567 GLGYEASRVFQQMQGAGMRPNSISITSALSACTNMALLNYGRSIHGYVMRNFMSFSLQIT 626

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
           TS++DMYAKCGN+  AK VF I  +KELPVYNAMIS YA HG + EALALF+ L ++GI 
Sbjct: 627 TSIIDMYAKCGNLDDAKFVFIICSTKELPVYNAMISAYASHGKSAEALALFQELVKQGIM 686

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
           PD ITFT++L+ACSH  L+ EGLELF  M  + Q+KPS +H+GC+V LL+  G LDEALR
Sbjct: 687 PDHITFTSVLSACSHGRLLKEGLELFKYMVCELQMKPSEKHYGCLVKLLTNDGQLDEALR 746

Query: 662 VILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721
           +ILTMP  PDAHI+GSLL+ C +++ETELA YI++ LL++EP+NPGNYVALSN YAA G+
Sbjct: 747 IILTMPSPPDAHILGSLLAACGQNHETELANYIAKWLLKVEPNNPGNYVALSNVYAALGK 806

Query: 722 WNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           W+EVS +R  MKEKGL+K PGCSWI++G+EL+VF+A D+SHP+ EEIY  L LLG  +
Sbjct: 807 WDEVSNIRGFMKEKGLKKIPGCSWIEVGQELNVFIASDKSHPEKEEIYKILDLLGFEM 864


>gi|347954486|gb|AEP33743.1| chlororespiratory reduction 21, partial [Lobularia maritima]
          Length = 734

 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/714 (53%), Positives = 523/714 (73%), Gaps = 55/714 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SYFH++SSLSK  +I EA+ L+TEM  RN +IGPEI+GE+LQGCVY RD+ TG+QIHAR+
Sbjct: 18  SYFHRVSSLSKNGEINEALRLVTEMDFRNLRIGPEIFGEILQGCVYDRDLSTGKQIHARV 77

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LKNG+F++RNEY+ETKLVVFYAKCD L+++  LF RLR++NVFSWAAI+G+  R+G SE 
Sbjct: 78  LKNGEFYSRNEYIETKLVVFYAKCDDLEISESLFSRLRIRNVFSWAAIVGVRSRIGFSED 137

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL GFVEM E  +SPDNFV+PNV KACG L W  FGR+VHG+V+K     CVFVASSL D
Sbjct: 138 ALTGFVEMLETEISPDNFVVPNVCKACGVLRWSRFGRSVHGFVMKSRLHDCVFVASSLAD 197

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MYGK G L++ARKVFD +  RNVVAWN+M+VGYVQNG+NEEAIR+  +M  EG+EPTRV+
Sbjct: 198 MYGKRGFLDDARKVFDEIPERNVVAWNAMMVGYVQNGMNEEAIRLLSDMKEEGIEPTRVT 257

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           V+  LSASAN+  ++EGKQ+HAVA++NG+E+DN+LG+S++NFY KVGL+E AE+VF RM+
Sbjct: 258 VSMCLSASANIGGIEEGKQSHAVAIVNGLEMDNILGTSLLNFYCKVGLIEYAEMVFDRMI 317

Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
            +D+VTWNLLI+ YVQ G                                          
Sbjct: 318 GKDVVTWNLLISGYVQQGLVENAIDMCRLMRVENLKFDCVTLSTLMSVAARTRDLKLGKE 377

Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                     +SD+ +AS+ VDMYA+C  + +AK+VF++ + +D++LWN LLAAY + G 
Sbjct: 378 VLCYCIRHSFESDIGLASTAVDMYAECGSVVDAKKVFDATVQKDLILWNALLAAYTESGH 437

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
           SGEA RLFY+MQL+ + PN+I+ N ++   L NGQ++EAK+MF QMQS G+ PNLI+WTT
Sbjct: 438 SGEALRLFYEMQLQSVPPNVITRNLIMRSLLGNGQVSEAKEMFSQMQSSGIFPNLISWTT 497

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +++GL QN C  EAILF ++MLE+G +P+T +I  ALSAC ++ASL  G +IHGY+IR+ 
Sbjct: 498 MMNGLVQNGCSEEAILFLRKMLESGARPNTVSIAIALSACANLASLHLGTSIHGYIIRNQ 557

Query: 534 LCLPTPIV-TSLVDMYAKCGNIHQAKRVF--DISPSKELPVYNAMISGYAMHGLAVEALA 590
               + +V TSLVDMYAKCG+I++A+RVF   +    ELP+Y AMIS YA++G   EA+ 
Sbjct: 558 QHSSSVLVDTSLVDMYAKCGDINKAERVFGSKLYSEFELPLYGAMISAYALYGKLKEAVT 617

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           L++NL++ GI+PD  T T++L+AC +AG   + +E+F GM S H +KP +EH+  +V LL
Sbjct: 618 LYRNLEEIGIEPDDKTITSLLSACKNAGDTKQAIEIFAGMVSKHGMKPCLEHYSLMVELL 677

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
           +  G +++ALR++  MP  PDA +I SLL +C K ++TEL EYIS+HL+  EP+
Sbjct: 678 ASAGEVEKALRLVEEMPYKPDARVIQSLLDSCNKQHKTELMEYISKHLVVFEPE 731


>gi|347954484|gb|AEP33742.1| chlororespiratory reduction 21 [Barbarea verna]
          Length = 607

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/615 (56%), Positives = 452/615 (73%), Gaps = 70/615 (11%)

Query: 1   MASFTFTTPPNPKFS-HTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQ 59
           MAS  F  P    FS  TKP K               D ++     SYFH++SSL K  +
Sbjct: 1   MASLPFKLP----FSVSTKPCK------------HHDDQAHSPSSTSYFHRVSSLCKNGE 44

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           IREA+ L+TEM  RN +IGPEIYGE+LQGCVY+RD+ TG+QIHARILKNGDF+ARNEY+E
Sbjct: 45  IREALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYARNEYIE 104

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           TKLV+FY+KCD+ +VA  LF +LRV+NV+SWAAIIGL CR+GL E AL+GFVEM EDG+ 
Sbjct: 105 TKLVIFYSKCDSFEVAEVLFSKLRVRNVYSWAAIIGLKCRIGLCEGALMGFVEMFEDGIF 164

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           PDNFV+PNV KACGAL W  FGR VHGYV+K G D CVFVASSL DMYGKCG L++ARKV
Sbjct: 165 PDNFVVPNVXKACGALQWSRFGRGVHGYVVKSGXDDCVFVASSLADMYGKCGVLDDARKV 224

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD +  RNVVAWN+++VGYVQNG+NEEAIR+F++M  EG+EPTRV+V++ LSASAN+  +
Sbjct: 225 FDEIPERNVVAWNALMVGYVQNGMNEEAIRLFFDMREEGIEPTRVTVSTCLSASANMGGI 284

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
           +EGKQ+HA+A+++G+ELDN+LG+SI+NFY KVGL+E AE++F RM+E+D+VTWNLLI+ Y
Sbjct: 285 EEGKQSHAIAIVHGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGY 344

Query: 360 VQSG----------------------------------------------------QSDV 367
           VQ G                                                    +SD+
Sbjct: 345 VQQGLVEDAIHMCQLMRLENLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSLESDI 404

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           V+AS+ +DMYAKC  I +A++ F+SI+ +D++LWNTLLAAYA+ G SGEA RLFY+MQLE
Sbjct: 405 VLASTAIDMYAKCGSIVDARKAFDSIVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLE 464

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
            + PN+I+WN +IL FL NGQ+NEAK+MFLQMQS GV PNL++WTT+++GL QN C  EA
Sbjct: 465 SVPPNVITWNLIILSFLGNGQVNEAKEMFLQMQSSGVFPNLVSWTTMMNGLVQNGCSEEA 524

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD-LCLPTPIVTSLVD 546
           ILF ++M E+G++P+  +IT ALSAC  +ASL  GR+IHGY+IR+        I TSLVD
Sbjct: 525 ILFLRKMQESGLRPNAISITVALSACAHLASLHLGRSIHGYIIRNQHHSSSVSIETSLVD 584

Query: 547 MYAKCGNIHQAKRVF 561
           MYAKCG++++A+ +F
Sbjct: 585 MYAKCGDLNKAEMIF 599



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 154/559 (27%), Positives = 240/559 (42%), Gaps = 91/559 (16%)

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING--MELD 317
           +NG   EA+ +  EM    +         IL        L  GKQ HA  + NG     +
Sbjct: 41  KNGEIREALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYARN 100

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSR-------------------------------MVE 346
             + + ++ FYSK    E AEV+FS+                               M E
Sbjct: 101 EYIETKLVIFYSKCDSFEVAEVLFSKLRVRNVYSWAAIIGLKCRIGLCEGALMGFVEMFE 160

Query: 347 RDIVTWNLLIASY--------------------VQSGQSD-VVVASSIVDMYAKCERIDN 385
             I   N ++ +                     V+SG  D V VASS+ DMY KC  +D+
Sbjct: 161 DGIFPDNFVVPNVXKACGALQWSRFGRGVHGYVVKSGXDDCVFVASSLADMYGKCGVLDD 220

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A++VF+ I  R+VV WN L+  Y   G + EA RLF+ M+ EGI P  ++ ++ +     
Sbjct: 221 ARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFFDMREEGIEPTRVTVSTCLSASAN 280

Query: 446 NGQMNEAK-------------DMFLQMQSLG------------------VQPNLITWTTL 474
            G + E K             D  L    L                   ++ +++TW  L
Sbjct: 281 MGGIEEGKQSHAIAIVHGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLL 340

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           ISG  Q     +AI   Q M    +K    T+   +SA     +L+ G+ +  Y IRH L
Sbjct: 341 ISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSL 400

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
                + ++ +DMYAKCG+I  A++ FD    K+L ++N +++ YA  GL+ EAL LF  
Sbjct: 401 ESDIVLASTAIDMYAKCGSIVDARKAFDSIVEKDLILWNTLLAAYAEPGLSGEALRLFYE 460

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           +Q + + P+ IT+  I+ +    G VNE  E+F+ M S   V P++  +  ++N L + G
Sbjct: 461 MQLESVPPNVITWNLIILSFLGNGQVNEAKEMFLQMQSS-GVFPNLVSWTTMMNGLVQNG 519

Query: 655 NLDEA---LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL--QLEPDNPGNY 709
             +EA   LR +      P+A  I   LS C       L   I  +++  Q    +    
Sbjct: 520 CSEEAILFLRKMQESGLRPNAISITVALSACAHLASLHLGRSIHGYIIRNQHHSSSVSIE 579

Query: 710 VALSNAYAASGRWNEVSQV 728
            +L + YA  G  N+   +
Sbjct: 580 TSLVDMYAKCGDLNKAEMI 598



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 158/317 (49%), Gaps = 24/317 (7%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+Q HA  + +G     +  + T ++ FY K   ++ A  +F R+  K+V +W  +I   
Sbjct: 287 GKQSHAIAIVHG--LELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGY 344

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            + GL E A+     M+ + +  D   L  ++ A      +  G+ V  Y ++   +  +
Sbjct: 345 VQQGLVEDAIHMCQLMRLENLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSLESDI 404

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            +AS+ IDMY KCG + +ARK FD ++ ++++ WN+++  Y + GL+ EA+R+FYEM LE
Sbjct: 405 VLASTAIDMYAKCGSIVDARKAFDSIVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLE 464

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            V P  ++   I+ +      ++E K+       +G+  + V  ++++N   + G  E+A
Sbjct: 465 SVPPNVITWNLIILSFLGNGQVNEAKEMFLQMQSSGVFPNLVSWTTMMNGLVQNGCSEEA 524

Query: 338 EVVFSRMVERDI------VTWNLLIASYV----------------QSGQSDVVVASSIVD 375
            +   +M E  +      +T  L   +++                Q   S V + +S+VD
Sbjct: 525 ILFLRKMQESGLRPNAISITVALSACAHLASLHLGRSIHGYIIRNQHHSSSVSIETSLVD 584

Query: 376 MYAKCERIDNAKQVFNS 392
           MYAKC  ++ A+ +F S
Sbjct: 585 MYAKCGDLNKAEMIFGS 601


>gi|347954456|gb|AEP33728.1| chlororespiratory reduction 21, partial [Brassica oleracea]
          Length = 643

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/643 (53%), Positives = 462/643 (71%), Gaps = 57/643 (8%)

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
           GFGR VHGYV K G D CVFVASSL DMYGKCG L++ARKVFD +  RNVVAWN+++VGY
Sbjct: 1   GFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGY 60

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           VQNG+NEEAIR+  +M  EGVEPTRV+V++ LSASAN+  ++EGK +HA+AV+NG+ELDN
Sbjct: 61  VQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKXSHALAVVNGLELDN 120

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
           +LG+SI+NFY KVGL++ AE+VF RM+ +D+VTWNLLI+ YVQ G               
Sbjct: 121 ILGTSILNFYCKVGLIDYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCQLMRLE 180

Query: 364 -------------------------------------QSDVVVASSIVDMYAKCERIDNA 386
                                                +SD+V+AS+ VDMYAKC  I +A
Sbjct: 181 KLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASAAVDMYAKCGSIVDA 240

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
           K+VF+S + +D++LWNTLLAAYA+ G SGEA RLFY+MQLE + PN+I+WN +IL  LRN
Sbjct: 241 KKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRN 300

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           GQ++EAK+MFLQMQS G+ P +++WTT+++GL  N C  EAI + ++M E+G++P+  +I
Sbjct: 301 GQVDEAKEMFLQMQSSGIVPTIVSWTTMMNGLVXNGCSEEAIHYLRKMQESGMRPNVFSI 360

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDL-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           T ALSAC ++ASL  GR++HGY+IR+ L      I TSLVDMYAKCG+I +A++VF    
Sbjct: 361 TVALSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKL 420

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
             ELP+YNAMIS YA++G   EA+AL+ +L+  GI PD+ITFTNIL+AC+HAG +N+ +E
Sbjct: 421 FSELPLYNAMISAYALYGNVEEAMALYGSLEDMGIKPDNITFTNILSACNHAGDINQAIE 480

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
           +F  M S H VKP +EH+G +V+LL+  G  ++ALR++  MP +PDA +I SLL+TC K 
Sbjct: 481 IFSDMVSKHGVKPCLEHYGLMVDLLASAGETEKALRLMEEMPYEPDARMIQSLLATCNKE 540

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
           ++TEL EY+S+ LL+ EPDN GNYV +SNAYA  G W+EV ++R++MK KGL+K PGCSW
Sbjct: 541 HKTELVEYLSKQLLESEPDNSGNYVTISNAYAGEGSWDEVVKMREMMKAKGLKKQPGCSW 600

Query: 746 IQIGE----ELHVFVACDRSHPKTEEIYATLALLGMHVRLVSK 784
           I++       + VFVA D++H +  EI   LALL   +R  SK
Sbjct: 601 IRVKREEEEXVQVFVANDKTHLRNNEIRRMLALLLXDMRSDSK 643


>gi|347954452|gb|AEP33726.1| chlororespiratory reduction 21, partial [Aethionema cordifolium]
          Length = 618

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/609 (52%), Positives = 441/609 (72%), Gaps = 58/609 (9%)

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
           DMYGKCG L++ARKVFD M  RNVVAWNS++VGYVQNG+NEEAIR+  +M  EG+EPTRV
Sbjct: 1   DMYGKCGILDDARKVFDRMPERNVVAWNSLMVGYVQNGMNEEAIRLLSDMMNEGIEPTRV 60

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +V++ LSASA++  ++EGKQ+HA+A++NG+ELDN+LG+SI+NFY KVGL+E AE++F +M
Sbjct: 61  TVSTCLSASAHMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAEMIFDKM 120

Query: 345 VERDIVTWNLLIASYVQSG----------------------------------------- 363
           +E+D+VTWNLLI+ YVQ G                                         
Sbjct: 121 IEKDVVTWNLLISGYVQQGLIEDAIYKCKLMRLENLKFDCVTISTLMSAAAHTQDLNLGK 180

Query: 364 -----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                      +SD+V AS+ VDMYAKC RI +AK+VF+S + +D++LWNTLLAAYA+  
Sbjct: 181 QLQCYCLRNSLESDIVSASTTVDMYAKCGRILDAKKVFDSTVHKDLMLWNTLLAAYAESS 240

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
            SGEA RLFY+MQLE ++PN+ISWN +IL  LR GQ+ EAK MFLQ+QS G+ PNLI+WT
Sbjct: 241 HSGEALRLFYEMQLESVTPNVISWNLIILSLLRXGQVTEAKXMFLQIQSTGISPNLISWT 300

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           TL++GL QN    EAI++F++M E+G++P+  + T ALSAC+++ASL  GR+IHGY+IR+
Sbjct: 301 TLMNGLVQNGYSEEAIMYFKKMQESGLRPNPFSXTVALSACSNLASLHFGRSIHGYIIRN 360

Query: 533 DL-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
                   + TSL+DMYAKCG+I++A+RVF      ELP+YNAMIS Y ++G   EA+ L
Sbjct: 361 QWHSGSVSLETSLLDMYAKCGDINKAERVFGNKLYSELPLYNAMISAYGLYGKVEEAITL 420

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           +++L+   I PD+ITFTN+L+AC+H G VN+ +++F  M S H ++P +EH+G +V+L +
Sbjct: 421 YRDLEALDIKPDNITFTNLLSACNHTGSVNQAIQIFTDMVSKHGMQPCLEHYGLMVDLFA 480

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
             G ++EALR++  MP +PDA +I SLL+ C K ++TEL +Y+S++LL+ EPDN GNYV 
Sbjct: 481 SSGEIEEALRIVKDMPYEPDARMIQSLLAYCKKEHKTELVDYLSKYLLESEPDNSGNYVT 540

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG-----EELHVFVACDRSHPKTE 766
           +SNAYAA G W EV ++R++MKEKGL+K PGCSWIQ+      EE+HVFVA D++H K  
Sbjct: 541 ISNAYAAGGNWEEVMKMREMMKEKGLKKKPGCSWIQVAGRQEKEEVHVFVANDKTHLKYN 600

Query: 767 EIYATLALL 775
           EI   LALL
Sbjct: 601 EIEMMLALL 609



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/532 (23%), Positives = 243/532 (45%), Gaps = 29/532 (5%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
            EA+ LL++M     +         L    +   +  G+Q HA  + NG     +  + T
Sbjct: 41  EEAIRLLSDMMNEGIEPTRVTVSTCLSASAHMGGIEEGKQSHAIAIVNG--LELDNILGT 98

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            ++ FY K   ++ A  +F ++  K+V +W  +I    + GL E A+     M+ + +  
Sbjct: 99  SILNFYCKVGLIECAEMIFDKMIEKDVVTWNLLISGYVQQGLIEDAIYKCKLMRLENLKF 158

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D   +  ++ A      +  G+ +  Y L+   +  +  AS+ +DMY KCG + +A+KVF
Sbjct: 159 DCVTISTLMSAAAHTQDLNLGKQLQCYCLRNSLESDIVSASTTVDMYAKCGRILDAKKVF 218

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D  + ++++ WN+++  Y ++  + EA+R+FYEM LE V P  +S   I+ +      + 
Sbjct: 219 DSTVHKDLMLWNTLLAAYAESSHSGEALRLFYEMQLESVTPNVISWNLIILSLLRXGQVT 278

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI----------- 349
           E K         G+  + +  ++++N   + G  E+A + F +M E  +           
Sbjct: 279 EAKXMFLQIQSTGISPNLISWTTLMNGLVQNGYSEEAIMYFKKMQESGLRPNPFSXTVAL 338

Query: 350 --------VTWNLLIASYVQSGQ---SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
                   + +   I  Y+   Q     V + +S++DMYAKC  I+ A++VF + +  ++
Sbjct: 339 SACSNLASLHFGRSIHGYIIRNQWHSGSVSLETSLLDMYAKCGDINKAERVFGNKLYSEL 398

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
            L+N +++AY   G+  EA  L+  ++   I P+ I++ +++      G +N+A  +F  
Sbjct: 399 PLYNAMISAYGLYGKVEEAITLYRDLEALDIKPDNITFTNLLSACNHTGSVNQAIQIFTD 458

Query: 459 MQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
           M S  G+QP L  +  ++     +    EA+   ++M     +P    I   L+ C    
Sbjct: 459 MVSKHGMQPCLEHYGLMVDLFASSGEIEEALRIVKDM---PYEPDARMIQSLLAYCKKEH 515

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
                  +  YL+  +       VT + + YA  GN  +  ++ ++   K L
Sbjct: 516 KTELVDYLSKYLLESEPDNSGNYVT-ISNAYAAGGNWEEVMKMREMMKEKGL 566



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 141/323 (43%), Gaps = 69/323 (21%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           IS   ++  I +A+     M+  N +        L+    + +D+  G+Q+    L+N  
Sbjct: 132 ISGYVQQGLIEDAIYKCKLMRLENLKFDCVTISTLMSAAAHTQDLNLGKQLQCYCLRNSL 191

Query: 110 -----------DFFAR-----------NEYVETKLVVF------YAKCDALDVASRLFCR 141
                      D +A+           +  V   L+++      YA+      A RLF  
Sbjct: 192 ESDIVSASTTVDMYAKCGRILDAKKVFDSTVHKDLMLWNTLLAAYAESSHSGEALRLFYE 251

Query: 142 LRVK----NVFSWAAIIGLNCRVG-----------------------------------L 162
           ++++    NV SW  II    R G                                    
Sbjct: 252 MQLESVTPNVISWNLIILSLLRXGQVTEAKXMFLQIQSTGISPNLISWTTLMNGLVQNGY 311

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVAS 221
           SE+A++ F +MQE G+ P+ F     L AC  L  + FGR++HGY+++  +  G V + +
Sbjct: 312 SEEAIMYFKKMQESGLRPNPFSXTVALSACSNLASLHFGRSIHGYIIRNQWHSGSVSLET 371

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           SL+DMY KCGD+ +A +VF   +   +  +N+MI  Y   G  EEAI ++ ++    ++P
Sbjct: 372 SLLDMYAKCGDINKAERVFGNKLYSELPLYNAMISAYGLYGKVEEAITLYRDLEALDIKP 431

Query: 282 TRVSVTSILSASANLDALDEGKQ 304
             ++ T++LSA  +  ++++  Q
Sbjct: 432 DNITFTNLLSACNHTGSVNQAIQ 454


>gi|224088075|ref|XP_002308315.1| predicted protein [Populus trichocarpa]
 gi|222854291|gb|EEE91838.1| predicted protein [Populus trichocarpa]
          Length = 545

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/544 (57%), Positives = 394/544 (72%), Gaps = 52/544 (9%)

Query: 70  MKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129
           M  R   IGP+IYG LLQGC+Y R ++ GQQIH+RI+K GD  A NEY+ETKL +FYAKC
Sbjct: 1   MDRRKIPIGPDIYGLLLQGCLYDRALFMGQQIHSRIIKIGDSLATNEYLETKLFIFYAKC 60

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
              +VA+  F RL VKNVFSWAAIIGLNCR+G   +AL+G  EM + G+  DNFV+PN+L
Sbjct: 61  HLFEVANNFFSRLSVKNVFSWAAIIGLNCRMGFYREALMGLCEMIDTGILADNFVVPNIL 120

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV 249
           KAC AL W+ FGR VHGYV+K+GFD CVFV+SSL+D YGKCG LE+ARKVFD M  +NVV
Sbjct: 121 KACAALQWISFGRGVHGYVVKMGFDRCVFVSSSLVDAYGKCGILEDARKVFDNMSDKNVV 180

Query: 250 AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVA 309
            WNSMI  YVQNG + EA RVF EM LE VEP +V++ S LSASANL A++EGKQAHA+A
Sbjct: 181 TWNSMIGSYVQNGFDVEAARVFSEMRLEDVEPNQVTLLSFLSASANLGAVEEGKQAHAIA 240

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----- 364
           V+ G ELD++LG SI+NFYSKVGL++DAE+VF  M+E+D V WNLLI+SYVQ GQ     
Sbjct: 241 VLGGYELDSILGGSILNFYSKVGLIKDAELVFGMMLEKDAVAWNLLISSYVQYGQVEKAL 300

Query: 365 -----------------------------------------------SDVVVASSIVDMY 377
                                                          SD+ VA+S++DMY
Sbjct: 301 DLCHLMRLENMRFDSVTLASILSACSIMGNIELGKEGHCYCIRNYLVSDLAVANSMIDMY 360

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           AKCE+I +A+ VFNS + +D++LWNTLL AYA+LG +GE  +LFY MQLE + PN++SWN
Sbjct: 361 AKCEKIADARHVFNSTMNKDLLLWNTLLTAYAELGVTGEVLKLFYGMQLESVPPNVMSWN 420

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           +VILGF+RNGQ+NEA+DMF  MQ++G+ PNL+T+TTLI GL QN  GNEAIL FQ+M E 
Sbjct: 421 AVILGFIRNGQINEAQDMFSHMQAVGIHPNLMTFTTLICGLVQNGFGNEAILVFQKMQEC 480

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           GI+ +   I   +SACTDVASL+ GRAIHGY++RHDL  P P+ T+L +MY+KCGN+ QA
Sbjct: 481 GIRANLPIIISTISACTDVASLQYGRAIHGYILRHDLLSPIPVATALAEMYSKCGNMDQA 540

Query: 558 KRVF 561
           KRV 
Sbjct: 541 KRVL 544



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 143/589 (24%), Positives = 258/589 (43%), Gaps = 91/589 (15%)

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV--FVASSLIDMYGKCGDLEE 235
           + PD + L  +L+ C     +  G+ +H  ++K+G       ++ + L   Y KC   E 
Sbjct: 8   IGPDIYGL--LLQGCLYDRALFMGQQIHSRIIKIGDSLATNEYLETKLFIFYAKCHLFEV 65

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A   F  +  +NV +W ++I    + G   EA+    EM   G+      V +IL A A 
Sbjct: 66  ANNFFSRLSVKNVFSWAAIIGLNCRMGFYREALMGLCEMIDTGILADNFVVPNILKACAA 125

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L  +  G+  H   V                   K+G        F R V          
Sbjct: 126 LQWISFGRGVHGYVV-------------------KMG--------FDRCV---------- 148

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                        V+SS+VD Y KC  +++A++VF+++  ++VV WN+++ +Y   G   
Sbjct: 149 ------------FVSSSLVDAYGKCGILEDARKVFDNMSDKNVVTWNSMIGSYVQNGFDV 196

Query: 416 EASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEA------------------ 452
           EA+R+F +M+LE + PN ++  S +     LG +  G+   A                  
Sbjct: 197 EAARVFSEMRLEDVEPNQVTLLSFLSASANLGAVEEGKQAHAIAVLGGYELDSILGGSIL 256

Query: 453 ---------KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
                    KD  L    + ++ + + W  LIS   Q     +A+     M    ++  +
Sbjct: 257 NFYSKVGLIKDAELVF-GMMLEKDAVAWNLLISSYVQYGQVEKALDLCHLMRLENMRFDS 315

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            T+   LSAC+ + ++  G+  H Y IR+ L     +  S++DMYAKC  I  A+ VF+ 
Sbjct: 316 VTLASILSACSIMGNIELGKEGHCYCIRNYLVSDLAVANSMIDMYAKCEKIADARHVFNS 375

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
           + +K+L ++N +++ YA  G+  E L LF  +Q + + P+ +++  ++      G +NE 
Sbjct: 376 TMNKDLLLWNTLLTAYAELGVTGEVLKLFYGMQLESVPPNVMSWNAVILGFIRNGQINEA 435

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAH--IIGSLLS 680
            ++F  M     + P++  F  ++  L + G  +EA+ V   M  C   A+  II S +S
Sbjct: 436 QDMFSHM-QAVGIHPNLMTFTTLICGLVQNGFGNEAILVFQKMQECGIRANLPIIISTIS 494

Query: 681 TCVKSNETELAEYISEHLLQLEPDNP-GNYVALSNAYAASGRWNEVSQV 728
            C      +    I  ++L+ +  +P     AL+  Y+  G  ++  +V
Sbjct: 495 ACTDVASLQYGRAIHGYILRHDLLSPIPVATALAEMYSKCGNMDQAKRV 543



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 126/295 (42%), Gaps = 41/295 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ISS  +  Q+ +A+DL   M+  N +        +L  C    ++  G++ H   ++N  
Sbjct: 287 ISSYVQYGQVEKALDLCHLMRLENMRFDSVTLASILSACSIMGNIELGKEGHCYCIRN-- 344

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
           +   +  V   ++  YAKC+ +  A  +F     K++  W  ++     +G++ + L  F
Sbjct: 345 YLVSDLAVANSMIDMYAKCEKIADARHVFNSTMNKDLLLWNTLLTAYAELGVTGEVLKLF 404

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             MQ + V P+             + W                       +++I  + + 
Sbjct: 405 YGMQLESVPPN------------VMSW-----------------------NAVILGFIRN 429

Query: 231 GDLEEARKVFDGM----IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           G + EA+ +F  M    I  N++ + ++I G VQNG   EAI VF +M   G+      +
Sbjct: 430 GQINEAQDMFSHMQAVGIHPNLMTFTTLICGLVQNGFGNEAILVFQKMQECGIRANLPII 489

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
            S +SA  ++ +L  G+  H   + + +     + +++   YSK G ++ A+ V 
Sbjct: 490 ISTISACTDVASLQYGRAIHGYILRHDLLSPIPVATALAEMYSKCGNMDQAKRVL 544


>gi|255576918|ref|XP_002529344.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531164|gb|EEF33011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 506

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 259/467 (55%), Positives = 324/467 (69%), Gaps = 52/467 (11%)

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
           +G +E AL+GF EM + G+  DNFV+PN LKACGAL W+ FG+ VHGYV+K+G DGCVFV
Sbjct: 1   MGFNEIALMGFYEMIDCGLLADNFVVPNALKACGALYWIRFGKGVHGYVVKMGLDGCVFV 60

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           +SSLIDMYGKCG L +ARKVFD M  +NVV WNSMI+GYVQNGL  EAI+VF  M LE +
Sbjct: 61  SSSLIDMYGKCGILMDARKVFDAMRQKNVVTWNSMIMGYVQNGLYLEAIKVFANMRLEDI 120

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           E +RV++   LSA+ANL A+ EGKQ HA+AV  G ELDN+LGSSI+NFYSKVGL+EDAE+
Sbjct: 121 EYSRVTLLGFLSAAANLGAVTEGKQGHAIAVKGGYELDNILGSSILNFYSKVGLIEDAEL 180

Query: 340 VFSRMVERDIVTWNLLIASYV-----------------QSGQSDVVVASSI--------- 373
           VFS M E+D+VTWNLLI+SY+                 Q+ + D V   SI         
Sbjct: 181 VFSNMAEKDVVTWNLLISSYLQCELVEKALNMCHLMRFQNMKFDSVTLDSILSACANTKN 240

Query: 374 --------------------------VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                                     V+MYAKC  I +AK+VFNS + +D+ LWN LL A
Sbjct: 241 IQLGKEAHCYCIRNNLESDVDVANAIVNMYAKCGSIHDAKEVFNSTMNKDLTLWNMLLTA 300

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
           YA LG  GE  RLFYQMQLE + PN+ SWN+VILGFLRNGQ+N+AK++F +MQ++G+ PN
Sbjct: 301 YAQLGLVGETLRLFYQMQLESVPPNVTSWNAVILGFLRNGQVNKAKELFAEMQAVGIHPN 360

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
           L+T TTLISGL  N  GNEA+  F +M E GI+P+ T+I   +SACTD ASL+ GRAIHG
Sbjct: 361 LVTLTTLISGLIHNGLGNEALAIFLKMQEYGIRPNITSIINTISACTDPASLQCGRAIHG 420

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
           Y++RHDL    P+  +L  MYAKCGN  QAKRVFD+  S+  P+ +A
Sbjct: 421 YILRHDLWSQIPVANALATMYAKCGNTRQAKRVFDMILSEASPMCDA 467



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 215/465 (46%), Gaps = 69/465 (14%)

Query: 323 SIINFYSKV--GLLEDAEVVFSRMVERDIVTWNLL---IASYVQSGQSD--VVVASSIVD 375
           +++ FY  +  GLL D  VV + +     + W      +  YV     D  V V+SS++D
Sbjct: 7   ALMGFYEMIDCGLLADNFVVPNALKACGALYWIRFGKGVHGYVVKMGLDGCVFVSSSLID 66

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
           MY KC  + +A++VF+++  ++VV WN+++  Y   G   EA ++F  M+LE I  + ++
Sbjct: 67  MYGKCGILMDARKVFDAMRQKNVVTWNSMIMGYVQNGLYLEAIKVFANMRLEDIEYSRVT 126

Query: 436 WNSVILGFL---------------------------------------RNGQMNEAKDMF 456
               +LGFL                                       + G + +A+ +F
Sbjct: 127 ----LLGFLSAAANLGAVTEGKQGHAIAVKGGYELDNILGSSILNFYSKVGLIEDAELVF 182

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
             M     + +++TW  LIS   Q     +A+     M    +K  + T+   LSAC + 
Sbjct: 183 SNM----AEKDVVTWNLLISSYLQCELVEKALNMCHLMRFQNMKFDSVTLDSILSACANT 238

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
            +++ G+  H Y IR++L     +  ++V+MYAKCG+IH AK VF+ + +K+L ++N ++
Sbjct: 239 KNIQLGKEAHCYCIRNNLESDVDVANAIVNMYAKCGSIHDAKEVFNSTMNKDLTLWNMLL 298

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           + YA  GL  E L LF  +Q + + P+  ++  ++      G VN+  ELF  M     +
Sbjct: 299 TAYAQLGLVGETLRLFYQMQLESVPPNVTSWNAVILGFLRNGQVNKAKELFAEM-QAVGI 357

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMP---CDPDAHIIGSLLSTCVKSNETELAEY 693
            P++     +++ L   G  +EAL + L M      P+   I + +S C      +    
Sbjct: 358 HPNLVTLTTLISGLIHNGLGNEALAIFLKMQEYGIRPNITSIINTISACTDPASLQCGRA 417

Query: 694 ISEHLL------QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
           I  ++L      Q+   N     AL+  YA  G   +  +V D++
Sbjct: 418 IHGYILRHDLWSQIPVAN-----ALATMYAKCGNTRQAKRVFDMI 457



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 112/266 (42%), Gaps = 72/266 (27%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ISS  + + + +A+++   M+ +N +        +L  C   +++  G++ H   ++N  
Sbjct: 197 ISSYLQCELVEKALNMCHLMRFQNMKFDSVTLDSILSACANTKNIQLGKEAHCYCIRNN- 255

Query: 111 FFARNEYVETKLVVFYAKCDALDVAS-------------------------------RLF 139
               +  V   +V  YAKC ++  A                                RLF
Sbjct: 256 -LESDVDVANAIVNMYAKCGSIHDAKEVFNSTMNKDLTLWNMLLTAYAQLGLVGETLRLF 314

Query: 140 CRLRVK----NVFSWAAII----------------------GLNCRV------------- 160
            +++++    NV SW A+I                      G++  +             
Sbjct: 315 YQMQLESVPPNVTSWNAVILGFLRNGQVNKAKELFAEMQAVGIHPNLVTLTTLISGLIHN 374

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           GL  +AL  F++MQE G+ P+   + N + AC     +  GRA+HGY+L+      + VA
Sbjct: 375 GLGNEALAIFLKMQEYGIRPNITSIINTISACTDPASLQCGRAIHGYILRHDLWSQIPVA 434

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIAR 246
           ++L  MY KCG+  +A++VFD +++ 
Sbjct: 435 NALATMYAKCGNTRQAKRVFDMILSE 460


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 278/825 (33%), Positives = 439/825 (53%), Gaps = 100/825 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           ++ LSK  Q  EA+ +L  +   + QI  + Y  LLQ C+  +++  G++I+  I K+G 
Sbjct: 82  LNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGV 141

Query: 110 --DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
             D F RN      L+  YAKC     A ++F  +R K+V+SW  ++G   + GL E+A 
Sbjct: 142 QPDIFMRN-----TLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAF 196

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
               +M +D V PD     ++L AC     V  GR ++  +LK G+D  +FV ++LI+M+
Sbjct: 197 KLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMH 256

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            KCGD+ +A KVFD +  R++V W SMI G  ++G  ++A  +F  M  EGV+P +V+  
Sbjct: 257 IKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFV 316

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S+L A  + +AL++GK+ HA     G + +  +G++I++ Y+K G +EDA  VF  +  R
Sbjct: 317 SLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR 376

Query: 348 DIVTWNLLIASYVQSGQ------------------------------------------- 364
           ++V+W  +IA + Q G+                                           
Sbjct: 377 NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQ 436

Query: 365 ---------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                    SD  V ++++ MYAKC  + +A +VF  I  ++VV WN ++ AY    +  
Sbjct: 437 DHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYD 496

Query: 416 EASRLFYQMQLEGISPNIISWNSVI----------LG----------------------- 442
            A   F  +  EGI PN  ++ S++          LG                       
Sbjct: 497 NALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALV 556

Query: 443 --FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             F+  G +  AK++F  M     + +L++W T+I+G  Q+     A  +F+ M E+GIK
Sbjct: 557 SMFVNCGDLMSAKNLFNDMP----KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIK 612

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P   T T  L+AC    +L  GR +H  +          + T L+ MY KCG+I  A +V
Sbjct: 613 PDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQV 672

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F   P K +  + +MI+GYA HG   EAL LF  +QQ+G+ PD ITF   L+AC+HAGL+
Sbjct: 673 FHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLI 732

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EGL  F  M  +  ++P MEH+GC+V+L  R G L+EA+  I+ M  +PD+ + G+LL 
Sbjct: 733 EEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLG 791

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C      ELAE  ++  L+L+P++ G +V LSN YAA+G W EV+++R +M ++G+ K 
Sbjct: 792 ACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKK 851

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           PG SWI++  ++H F + D++HP+TEEI+A L  L M +R +  V
Sbjct: 852 PGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYV 896



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 235/504 (46%), Gaps = 94/504 (18%)

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N+++    + G   EA++V   +    ++  R + +++L        L +G++ +     
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------- 363
           +G++ D  + +++IN Y+K G    A+ +F  M E+D+ +WNLL+  YVQ G        
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 364 --------------------------------------------QSDVVVASSIVDMYAK 379
                                                        +D+ V +++++M+ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
           C  I +A +VF+++  RD+V W +++   A  GR  +A  LF +M+ EG+ P+ +++ S+
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQP-------------------------------NL 468
           +        + + K +  +M+ +G                                  N+
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           ++WT +I+G  Q+   +EA LFF +M+E+GI+P+  T    L AC+  ++L+ G+ I  +
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +I         + T+L+ MYAKCG++  A RVF+    + +  +NAMI+ Y  H     A
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNA 498

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG-----LELFVGMFSDHQVKPSMEHF 643
           LA F+ L ++GI P+S TFT+ILN C  +  +  G     L +  G+ SD  V  ++   
Sbjct: 499 LATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNAL--- 555

Query: 644 GCVVNLLSRCGNLDEALRVILTMP 667
              V++   CG+L  A  +   MP
Sbjct: 556 ---VSMFVNCGDLMSAKNLFNDMP 576



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 148/302 (49%), Gaps = 36/302 (11%)

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
           ++D    N +L   +  G+  EA ++  ++    I     ++++++   ++   + + + 
Sbjct: 72  IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 455 MFLQMQSLGVQPNLI-------------------------------TWTTLISGLTQNSC 483
           ++  ++  GVQP++                                +W  L+ G  Q+  
Sbjct: 132 IYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
             EA    ++M++  +KP   T    L+AC D  ++  GR ++  +++        + T+
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L++M+ KCG+I  A +VFD  P+++L  + +MI+G A HG   +A  LF+ ++++G+ PD
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF--GCVVNLLSRCGNLDEALR 661
            + F ++L AC+H   + +G ++   M    +V    E +    ++++ ++CG++++AL 
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARM---KEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 662 VI 663
           V 
Sbjct: 369 VF 370


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 277/825 (33%), Positives = 438/825 (53%), Gaps = 100/825 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           ++ LSK  Q  EA+ +L  +   + QI  + Y  LLQ C+  +++  G++I+  I K+G 
Sbjct: 82  LNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGV 141

Query: 110 --DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
             D F  N      L+  YAKC     A ++F  +R K+V+SW  ++G   + GL E+A 
Sbjct: 142 QPDIFMWN-----TLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAF 196

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
               +M +D V PD     ++L AC     V  GR ++  +LK G+D  +FV ++LI+M+
Sbjct: 197 KLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMH 256

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            KCGD+ +A KVFD +  R++V W SMI G  ++G  ++A  +F  M  EGV+P +V+  
Sbjct: 257 IKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFV 316

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S+L A  + +AL++GK+ HA     G + +  +G++I++ Y+K G +EDA  VF  +  R
Sbjct: 317 SLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR 376

Query: 348 DIVTWNLLIASYVQSGQ------------------------------------------- 364
           ++V+W  +IA + Q G+                                           
Sbjct: 377 NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQ 436

Query: 365 ---------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                    SD  V ++++ MYAKC  + +A +VF  I  ++VV WN ++ AY    +  
Sbjct: 437 DHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYD 496

Query: 416 EASRLFYQMQLEGISPNIISWNSVI----------LG----------------------- 442
            A   F  +  EGI PN  ++ S++          LG                       
Sbjct: 497 NALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALV 556

Query: 443 --FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             F+  G +  AK++F  M     + +L++W T+I+G  Q+     A  +F+ M E+GIK
Sbjct: 557 SMFVNCGDLMSAKNLFNDMP----KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIK 612

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P   T T  L+AC    +L  GR +H  +          + T L+ MY KCG+I  A +V
Sbjct: 613 PDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQV 672

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F   P K +  + +MI+GYA HG   EAL LF  +QQ+G+ PD ITF   L+AC+HAGL+
Sbjct: 673 FHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLI 732

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EGL  F  M  +  ++P MEH+GC+V+L  R G L+EA+  I+ M  +PD+ + G+LL 
Sbjct: 733 EEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLG 791

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C      ELAE  ++  L+L+P++ G +V LSN YAA+G W EV+++R +M ++G+ K 
Sbjct: 792 ACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKK 851

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           PG SWI++  ++H F + D++HP+TEEI+A L  L M +R +  V
Sbjct: 852 PGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYV 896



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 235/504 (46%), Gaps = 94/504 (18%)

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N+++    + G   EA++V   +    ++  R + +++L        L +G++ +     
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------- 363
           +G++ D  + +++IN Y+K G    A+ +F  M E+D+ +WNLL+  YVQ G        
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 364 --------------------------------------------QSDVVVASSIVDMYAK 379
                                                        +D+ V +++++M+ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
           C  I +A +VF+++  RD+V W +++   A  GR  +A  LF +M+ EG+ P+ +++ S+
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQP-------------------------------NL 468
           +        + + K +  +M+ +G                                  N+
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           ++WT +I+G  Q+   +EA LFF +M+E+GI+P+  T    L AC+  ++L+ G+ I  +
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +I         + T+L+ MYAKCG++  A RVF+    + +  +NAMI+ Y  H     A
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNA 498

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG-----LELFVGMFSDHQVKPSMEHF 643
           LA F+ L ++GI P+S TFT+ILN C  +  +  G     L +  G+ SD  V  ++   
Sbjct: 499 LATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNAL--- 555

Query: 644 GCVVNLLSRCGNLDEALRVILTMP 667
              V++   CG+L  A  +   MP
Sbjct: 556 ---VSMFVNCGDLMSAKNLFNDMP 576



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 149/302 (49%), Gaps = 36/302 (11%)

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
           ++D    N +L   +  G+  EA ++  ++    I     ++++++   ++   + + + 
Sbjct: 72  IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 455 MFLQMQSLGVQPNLITWTTLIS-------------------------------GLTQNSC 483
           ++  ++  GVQP++  W TLI+                               G  Q+  
Sbjct: 132 IYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
             EA    ++M++  +KP   T    L+AC D  ++  GR ++  +++        + T+
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L++M+ KCG+I  A +VFD  P+++L  + +MI+G A HG   +A  LF+ ++++G+ PD
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF--GCVVNLLSRCGNLDEALR 661
            + F ++L AC+H   + +G ++   M    +V    E +    ++++ ++CG++++AL 
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARM---KEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 662 VI 663
           V 
Sbjct: 369 VF 370


>gi|125526790|gb|EAY74904.1| hypothetical protein OsI_02796 [Oryza sativa Indica Group]
          Length = 616

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/524 (46%), Positives = 325/524 (62%), Gaps = 52/524 (9%)

Query: 77  IGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVAS 136
           +GPE Y  LLQ CV    +  G+Q+HA  +K G  + R+ Y+ TKL VFYA+C AL  A 
Sbjct: 73  VGPEAYASLLQCCVAAGCLRAGRQVHAAAVKRGPRYCRHAYIGTKLAVFYARCGALGDAE 132

Query: 137 RLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
           R F  L  KN F+WAA+IG+  R GL  KAL G+  M E GV  DNFV+PNVLKAC  LG
Sbjct: 133 RAFSALPAKNAFAWAAVIGMWSRAGLHGKALDGYAAMLEAGVPADNFVVPNVLKACAGLG 192

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
            +  GRAVHGY  K G   CV+V SSL+D YGKCG++++AR+VFD M  R VV+WNSM++
Sbjct: 193 LLAPGRAVHGYAWKPGLGNCVYVMSSLVDFYGKCGEVDDAREVFDVMPERTVVSWNSMLM 252

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           GY+ NG  +EA  +FYEM +EGV PTRVSV S LSASA+L+ LD G+Q HAVAV +G+E+
Sbjct: 253 GYIHNGRIDEAADLFYEMRVEGVLPTRVSVLSFLSASADLEVLDGGRQGHAVAVSSGLEM 312

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD---------- 366
           D +LGSS+INFY KVGL+E AEV+F +MVERDIVTWNL+I+ Y+Q GQ+D          
Sbjct: 313 DLILGSSMINFYCKVGLVEAAEVIFEQMVERDIVTWNLMISGYLQDGQTDKALTTCHRML 372

Query: 367 --------VVVAS----------------------------------SIVDMYAKCERID 384
                   V +AS                                  S++++Y+   RI+
Sbjct: 373 ESGLKFDCVTLASVIMACVKSYRMEVGGAAHAYAVRNNLESDKTVFCSLIELYSSSGRIE 432

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
             ++VF+SI  RD+  W  ++ AYAD G   EA +L YQMQLEG SP    W+SV+  F+
Sbjct: 433 QMRRVFDSIRRRDIATWKAMICAYADHGMGSEALKLLYQMQLEGTSPTAACWDSVLSAFI 492

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
           RNGQ+++A   F +M     +PNL TW+ LISGL++N    E +    +M E    PS T
Sbjct: 493 RNGQLDDALSTFYEMLQTSTRPNLRTWSLLISGLSRNGMHPEVMNLCCKMQEVEPAPSPT 552

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
             + AL A    AS++ G+A+H  +++  L L   +V SL++MY
Sbjct: 553 IFSAALLAVKSAASVQYGKAMHACIVKKGLLLSKSVVQSLLNMY 596



 Score =  172 bits (435), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 209/469 (44%), Gaps = 94/469 (20%)

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMEL--DNVLGSSIINFYSKVGLLEDAEVVFSRM 344
            S+L        L  G+Q HA AV  G        +G+ +  FY++ G L DAE  FS +
Sbjct: 79  ASLLQCCVAAGCLRAGRQVHAAAVKRGPRYCRHAYIGTKLAVFYARCGALGDAERAFSAL 138

Query: 345 VERDIVTWNLLI----------------ASYVQSG-QSD--------------------- 366
             ++   W  +I                A+ +++G  +D                     
Sbjct: 139 PAKNAFAWAAVIGMWSRAGLHGKALDGYAAMLEAGVPADNFVVPNVLKACAGLGLLAPGR 198

Query: 367 --------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                         V V SS+VD Y KC  +D+A++VF+ +  R VV WN++L  Y   G
Sbjct: 199 AVHGYAWKPGLGNCVYVMSSLVDFYGKCGEVDDAREVFDVMPERTVVSWNSMLMGYIHNG 258

Query: 413 RSGEASRLFYQMQLEGISPNIISWNS-----------------------------VILG- 442
           R  EA+ LFY+M++EG+ P  +S  S                             +ILG 
Sbjct: 259 RIDEAADLFYEMRVEGVLPTRVSVLSFLSASADLEVLDGGRQGHAVAVSSGLEMDLILGS 318

Query: 443 -----FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
                + + G +  A+ +F QM    V+ +++TW  +ISG  Q+   ++A+     MLE+
Sbjct: 319 SMINFYCKVGLVEAAEVIFEQM----VERDIVTWNLMISGYLQDGQTDKALTTCHRMLES 374

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           G+K    T+   + AC     +  G A H Y +R++L     +  SL+++Y+  G I Q 
Sbjct: 375 GLKFDCVTLASVIMACVKSYRMEVGGAAHAYAVRNNLESDKTVFCSLIELYSSSGRIEQM 434

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           +RVFD    +++  + AMI  YA HG+  EAL L   +Q +G  P +  + ++L+A    
Sbjct: 435 RRVFDSIRRRDIATWKAMICAYADHGMGSEALKLLYQMQLEGTSPTAACWDSVLSAFIRN 494

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           G +++ L  F  M      +P++  +  +++ LSR G   E + +   M
Sbjct: 495 GQLDDALSTFYEMLQT-STRPNLRTWSLLISGLSRNGMHPEVMNLCCKM 542



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 11/164 (6%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHD--LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
           L  C     LR GR +H   ++     C    I T L   YA+CG +  A+R F   P+K
Sbjct: 82  LQCCVAAGCLRAGRQVHAAAVKRGPRYCRHAYIGTKLAVFYARCGALGDAERAFSALPAK 141

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
               + A+I  ++  GL  +AL  +  + + G+  D+    N+L AC+  GL+  G  + 
Sbjct: 142 NAFAWAAVIGMWSRAGLHGKALDGYAAMLEAGVPADNFVVPNVLKACAGLGLLAPGRAVH 201

Query: 628 VGMFSDHQVKPSMEH----FGCVVNLLSRCGNLDEALRVILTMP 667
                 +  KP + +       +V+   +CG +D+A  V   MP
Sbjct: 202 -----GYAWKPGLGNCVYVMSSLVDFYGKCGEVDDAREVFDVMP 240



 Score = 40.8 bits (94), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 10/121 (8%)

Query: 112 FARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFV 171
           F RN  ++  L  FY   + L  ++R        N+ +W+ +I    R G+  + +    
Sbjct: 491 FIRNGQLDDALSTFY---EMLQTSTR-------PNLRTWSLLISGLSRNGMHPEVMNLCC 540

Query: 172 EMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCG 231
           +MQE   +P   +    L A  +   V +G+A+H  ++K G      V  SL++MYG   
Sbjct: 541 KMQEVEPAPSPTIFSAALLAVKSAASVQYGKAMHACIVKKGLLLSKSVVQSLLNMYGSFN 600

Query: 232 D 232
           D
Sbjct: 601 D 601


>gi|357130454|ref|XP_003566863.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Brachypodium distachyon]
          Length = 608

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 252/600 (42%), Positives = 357/600 (59%), Gaps = 77/600 (12%)

Query: 10  PNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEK----QIREAVD 65
           P+P  +   P KP            E+  S+     S    ++SLS++      +R+A  
Sbjct: 5   PHPLPATPYPAKP-----------HETPRSF-----SLHAALASLSQQGGDNGSLRDAFA 48

Query: 66  LLTEMKCRN-----FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           L++  + ++       +GPE+Y  LLQ CV    +  G+Q+HA  +K G ++ R+ Y+ T
Sbjct: 49  LVSRAERQSSPAVAVAVGPEVYVSLLQCCVAAGSLRAGRQVHAAAVKRGPYYCRHAYIGT 108

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
           KL VFYA+C ALD A R F  L  KN F+WAA+IGL  R GL  +A+ G+V+M E GV  
Sbjct: 109 KLAVFYARCGALDDAERAFDALPKKNAFAWAAVIGLWSRAGLHARAVAGYVDMLEAGVPA 168

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           DNFV+PNVLKAC  +G +  GRA+H Y  K GF  CV+V SSL+D YGKCG++++AR+VF
Sbjct: 169 DNFVVPNVLKACAGIGMIETGRALHAYAWKAGFGECVYVLSSLVDFYGKCGEVDDAREVF 228

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D M A  VV WNSM++GY+ NG  ++A+ +FY+M +EGV PTRVSV S LSAS +L+A D
Sbjct: 229 DAMPATTVVTWNSMLMGYINNGRIDDAVDLFYQMRVEGVLPTRVSVLSFLSASVDLEAAD 288

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G+Q HAVAV +G+E+D +LG+SIINFY KVGL+E AE VF +MVERD +TWNL+IA Y+
Sbjct: 289 GGRQGHAVAVSSGLEMDVILGTSIINFYCKVGLVEAAEAVFKQMVERDTITWNLMIAGYL 348

Query: 361 QSGQ----------------------------------------------------SDVV 368
           Q  Q                                                    SD  
Sbjct: 349 QDEQIDKALITCQRMLRSGLRFDCVTLACIIRAYRESCNTEMGRAAHGYAVRNNLESDRA 408

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           VA  ++++Y   ER + A++VF+ +  RD+V+  T+++AY D G S EA +L YQMQLEG
Sbjct: 409 VACGLIELYMSTERTEYARRVFDVMSCRDIVMCKTMISAYEDHGMSTEARKLLYQMQLEG 468

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
           ISP    W+SVI  F++NGQ++EA  +F +M     +PNL TW+ LISGL+QN   +E +
Sbjct: 469 ISPTAACWDSVISVFMKNGQIDEALQIFNEMLLTKTRPNLRTWSLLISGLSQNGMHHEVM 528

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
               +M E    PS T  + AL A    AS++ G+A+H  +++  L L   ++ SL++MY
Sbjct: 529 NLCCKMQEVEQAPSPTIFSAALLAMKTAASVQYGKAVHACIVKKGLLLSKSVIQSLLNMY 588



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 213/468 (45%), Gaps = 94/468 (20%)

Query: 288 SILSASANLDALDEGKQAHAVAVINGMEL--DNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           S+L       +L  G+Q HA AV  G        +G+ +  FY++ G L+DAE  F  + 
Sbjct: 72  SLLQCCVAAGSLRAGRQVHAAAVKRGPYYCRHAYIGTKLAVFYARCGALDDAERAFDALP 131

Query: 346 ERDIVTWNLLI-------------ASYV---------------------------QSGQS 365
           +++   W  +I             A YV                           ++G++
Sbjct: 132 KKNAFAWAAVIGLWSRAGLHARAVAGYVDMLEAGVPADNFVVPNVLKACAGIGMIETGRA 191

Query: 366 ------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                        V V SS+VD Y KC  +D+A++VF+++    VV WN++L  Y + GR
Sbjct: 192 LHAYAWKAGFGECVYVLSSLVDFYGKCGEVDDAREVFDAMPATTVVTWNSMLMGYINNGR 251

Query: 414 SGEASRLFYQMQLEGISPNIISWNS-----------------------------VILG-- 442
             +A  LFYQM++EG+ P  +S  S                             VILG  
Sbjct: 252 IDDAVDLFYQMRVEGVLPTRVSVLSFLSASVDLEAADGGRQGHAVAVSSGLEMDVILGTS 311

Query: 443 ----FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
               + + G +  A+ +F QM    V+ + ITW  +I+G  Q+   ++A++  Q ML +G
Sbjct: 312 IINFYCKVGLVEAAEAVFKQM----VERDTITWNLMIAGYLQDEQIDKALITCQRMLRSG 367

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           ++    T+ C + A  +  +   GRA HGY +R++L     +   L+++Y        A+
Sbjct: 368 LRFDCVTLACIIRAYRESCNTEMGRAAHGYAVRNNLESDRAVACGLIELYMSTERTEYAR 427

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           RVFD+   +++ +   MIS Y  HG++ EA  L   +Q +GI P +  + ++++     G
Sbjct: 428 RVFDVMSCRDIVMCKTMISAYEDHGMSTEARKLLYQMQLEGISPTAACWDSVISVFMKNG 487

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
            ++E L++F  M    + +P++  +  +++ LS+ G   E + +   M
Sbjct: 488 QIDEALQIFNEMLLT-KTRPNLRTWSLLISGLSQNGMHHEVMNLCCKM 534



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHD--LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
           L  C    SLR GR +H   ++     C    I T L   YA+CG +  A+R FD  P K
Sbjct: 74  LQCCVAAGSLRAGRQVHAAAVKRGPYYCRHAYIGTKLAVFYARCGALDDAERAFDALPKK 133

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
               + A+I  ++  GL   A+A + ++ + G+  D+    N+L AC+  G++  G  L 
Sbjct: 134 NAFAWAAVIGLWSRAGLHARAVAGYVDMLEAGVPADNFVVPNVLKACAGIGMIETGRALH 193

Query: 628 VGMFSDHQVKPSMEHFG-CV------VNLLSRCGNLDEALRVILTMP 667
              +           FG CV      V+   +CG +D+A  V   MP
Sbjct: 194 AYAWK--------AGFGECVYVLSSLVDFYGKCGEVDDAREVFDAMP 232


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 269/802 (33%), Positives = 423/802 (52%), Gaps = 100/802 (12%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           +A+ + ++M+    Q     Y  +L+ C     +  G++IHA I+++G  F  +  VET 
Sbjct: 13  DAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG--FQSDVRVETA 70

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           LV  Y KC ++D A  +F ++  +NV SW  +IG     G  ++A   F++MQ +G  P+
Sbjct: 71  LVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPN 130

Query: 182 NFVLPNVLKA---CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           ++   ++L A    GAL WV   + VH + +  G    + V ++L+ MY K G +++AR 
Sbjct: 131 SYTYVSILNANASAGALEWV---KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARV 187

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA--NL 296
           VFDGM+ R++ +W  MI G  Q+G  +EA  +F +M   G  P   +  SIL+ASA  + 
Sbjct: 188 VFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITST 247

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            AL+  K+ H  A   G   D  +G+++I+ Y+K G ++DA +VF  M +RD+++WN +I
Sbjct: 248 GALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMI 307

Query: 357 A-----------------------------------SYVQSGQ----------------- 364
                                               ++V +G                  
Sbjct: 308 GGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLV 367

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
           SD+ V S+ V MY +C  ID+A+ +F+ + +R+V  WN ++   A      EA  LF QM
Sbjct: 368 SDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQM 427

Query: 425 QLEGISP------NIIS---------W-------------------NSVILGFLRNGQMN 450
           + EG  P      NI+S         W                   N+++  + + G   
Sbjct: 428 RREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTM 487

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
            AK +F  M    V+ N+ TWT +ISGL Q+ CG+EA   F +ML  GI P  TT    L
Sbjct: 488 YAKQVFDDM----VERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSIL 543

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
           SAC    +L   + +H + +   L     +  +LV MYAKCG++  A+RVFD    +++ 
Sbjct: 544 SACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVY 603

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
            +  MI G A HG  ++AL LF  ++ +G  P+  +F  +L+ACSHAGLV+EG   F+ +
Sbjct: 604 SWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSL 663

Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETEL 690
             D+ ++P+MEH+ C+V+LL R G L+EA   IL MP +P     G+LL  CV     E+
Sbjct: 664 TQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEM 723

Query: 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGE 750
           AE+ ++  L+L+P +   YV LSN YAA+G W +   VR +M+ +G+RK PG SWI++  
Sbjct: 724 AEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDN 783

Query: 751 ELHVFVACDRSHPKTEEIYATL 772
           ++H FV  D SHP+++EIYA L
Sbjct: 784 QIHSFVVGDTSHPESKEIYAKL 805



 Score =  288 bits (737), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 184/608 (30%), Positives = 302/608 (49%), Gaps = 105/608 (17%)

Query: 153 IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212
           +IG     G +E A+  + +M+ +G  P+     ++LKAC +   + +G+ +H ++++ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
           F   V V ++L++MY KCG +++A+ +FD M+ RNV++W  MI G    G  +EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
           +M  EG  P   +  SIL+A+A+  AL+  K+ H+ AV  G+ LD  +G+++++ Y+K G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD-----------------------VVV 369
            ++DA VVF  MVERDI +W ++I    Q G+                         ++ 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 370 ASSI-------------------------------VDMYAKCERIDNAKQVFNSIILRDV 398
           AS+I                               + MYAKC  ID+A+ VF+ +  RDV
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDV 300

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW---------------------N 437
           + WN ++   A  G   EA  +F +MQ EG  P+  ++                     +
Sbjct: 301 ISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKH 360

Query: 438 SVILG--------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           +V +G              ++R G +++A+ +F     L V+ N+ TW  +I G+ Q  C
Sbjct: 361 AVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIF---DKLAVR-NVTTWNAMIGGVAQQKC 416

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
           G EA+  F +M   G  P  TT    LSA     +L   + +H Y I   L +   +  +
Sbjct: 417 GREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNA 475

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           LV MYAKCGN   AK+VFD    + +  +  MISG A HG   EA +LF  + ++GI PD
Sbjct: 476 LVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPD 535

Query: 604 SITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           + T+ +IL+AC+  G +    E+       G+ SD +V  ++      V++ ++CG++D+
Sbjct: 536 ATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNAL------VHMYAKCGSVDD 589

Query: 659 ALRVILTM 666
           A RV   M
Sbjct: 590 ARRVFDDM 597



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 162/318 (50%), Gaps = 11/318 (3%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I  ++++K  REA+ L  +M+   F      +  +L   V +  +   +++H+  +  G 
Sbjct: 408 IGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL 467

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
              R   V   LV  YAKC     A ++F  +  +NV +W  +I    + G   +A   F
Sbjct: 468 VDLR---VGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLF 524

Query: 171 VEMQEDGVSPDNFVLPNVLKAC---GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
           ++M  +G+ PD     ++L AC   GAL WV   + VH + +  G    + V ++L+ MY
Sbjct: 525 LQMLREGIVPDATTYVSILSACASTGALEWV---KEVHSHAVNAGLVSDLRVGNALVHMY 581

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            KCG +++AR+VFD M+ R+V +W  MI G  Q+G   +A+ +F +M LEG +P   S  
Sbjct: 582 AKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFV 641

Query: 288 SILSASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE-VVFSRMV 345
           ++LSA ++   +DEG +Q  ++    G+E      + +++   + G LE+A+  + +  +
Sbjct: 642 AVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPI 701

Query: 346 ERDIVTWNLLIASYVQSG 363
           E     W  L+ + V  G
Sbjct: 702 EPGDAPWGALLGACVTYG 719


>gi|413950564|gb|AFW83213.1| hypothetical protein ZEAMMB73_277915 [Zea mays]
          Length = 611

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/591 (42%), Positives = 344/591 (58%), Gaps = 64/591 (10%)

Query: 22  PLKLSQT----HLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRN--- 74
           PL L  T    H +K  ++     SL+ +     S  + E  +R+A  L+   + ++   
Sbjct: 5   PLPLPATMITPHHSKPHDAPRPEASLHAT-LASFSQQANEGSLRDAFALVARAERQSSPA 63

Query: 75  --FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL 132
               +GPE+Y  LLQ CV    +  G+Q+HA ++K G ++ RN YV TKL V YA+C AL
Sbjct: 64  AGVAVGPEVYTSLLQCCVTAGSLRAGRQVHAALVKRGTYYCRNAYVGTKLAVCYARCGAL 123

Query: 133 DVASRLFCRL--RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLK 190
           D A R F  L  R +N F+WAA+IGL  R GL  +AL GFV M E GV  DNFV+P V+K
Sbjct: 124 DDAERAFGALPERDRNAFAWAAVIGLWSRAGLHGRALAGFVAMLEAGVPADNFVVPTVIK 183

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA 250
           AC  LG  G GRAVHG+  K G   CV+V SSL+D+YGKCG++E+AR VFD M  R VV+
Sbjct: 184 ACAGLGLAGTGRAVHGHACKAGVAECVYVMSSLVDLYGKCGEVEDARAVFDAMPERTVVS 243

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           WN+M++ Y+ NG  +EA+ +FYEM +EGV PTRVS+ S LSASA L+A+D G+Q HAVAV
Sbjct: 244 WNTMLMAYIHNGRIDEAVDLFYEMRVEGVLPTRVSIVSFLSASAGLEAIDGGRQGHAVAV 303

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ------ 364
            +G+E+D +LGSS+I+FY KVGL+E AE VF +M  RD V WNL+IA Y Q GQ      
Sbjct: 304 SSGLEMDVILGSSMIHFYCKVGLVEAAEAVFEQMEGRDAVAWNLMIAGYFQDGQIDKALH 363

Query: 365 ----------------------------------------------SDVVVASSIVDMYA 378
                                                         SD  VA+ ++D+YA
Sbjct: 364 TCRRMLEADLKFDCVTLASIIMACVKSCITLLGIAAHGYAVRNGLDSDKTVAAGLIDLYA 423

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
              RI+ A++VFN+   R+ V+W  L++AY D G + EA  L  Q QL+G+S N   W+S
Sbjct: 424 STGRIEQARRVFNATSPRNPVVWKALVSAYVDCGMNSEARNLVNQTQLQGMSSNATCWDS 483

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           VI  F++ GQ+ +A DMF +M     +PNL TW+ LIS L+QN    E      +M E  
Sbjct: 484 VISAFIQKGQLEDAVDMFSEMLLTKTRPNLRTWSLLISALSQNGMRQEVTSICCKMQEVE 543

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
             PS T  + A+ A    AS+  G+AIH  +++  L L   ++ SL++MY+
Sbjct: 544 SAPSPTIYSSAILAVKTAASVDYGKAIHACVVKKGLLLSRSVIQSLLNMYS 594



 Score =  169 bits (427), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 140/543 (25%), Positives = 239/543 (44%), Gaps = 96/543 (17%)

Query: 166 ALIGFVEMQED---GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC--VFVA 220
           AL+   E Q     GV+    V  ++L+ C   G +  GR VH  ++K G   C   +V 
Sbjct: 51  ALVARAERQSSPAAGVAVGPEVYTSLLQCCVTAGSLRAGRQVHAALVKRGTYYCRNAYVG 110

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIAR--NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           + L   Y +CG L++A + F  +  R  N  AW ++I  + + GL+  A+  F  M   G
Sbjct: 111 TKLAVCYARCGALDDAERAFGALPERDRNAFAWAAVIGLWSRAGLHGRALAGFVAMLEAG 170

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V      V +++ A A                  G+ L    G ++     K G+   AE
Sbjct: 171 VPADNFVVPTVIKACA------------------GLGLAGT-GRAVHGHACKAGV---AE 208

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
            V+                           V SS+VD+Y KC  +++A+ VF+++  R V
Sbjct: 209 CVY---------------------------VMSSLVDLYGKCGEVEDARAVFDAMPERTV 241

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS-------------------- 438
           V WNT+L AY   GR  EA  LFY+M++EG+ P  +S  S                    
Sbjct: 242 VSWNTMLMAYIHNGRIDEAVDLFYEMRVEGVLPTRVSIVSFLSASAGLEAIDGGRQGHAV 301

Query: 439 ---------VILG------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
                    VILG      + + G +  A+ +F QM+      + + W  +I+G  Q+  
Sbjct: 302 AVSSGLEMDVILGSSMIHFYCKVGLVEAAEAVFEQMEGR----DAVAWNLMIAGYFQDGQ 357

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
            ++A+   + MLE  +K    T+   + AC        G A HGY +R+ L     +   
Sbjct: 358 IDKALHTCRRMLEADLKFDCVTLASIIMACVKSCITLLGIAAHGYAVRNGLDSDKTVAAG 417

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+D+YA  G I QA+RVF+ +  +   V+ A++S Y   G+  EA  L    Q +G+  +
Sbjct: 418 LIDLYASTGRIEQARRVFNATSPRNPVVWKALVSAYVDCGMNSEARNLVNQTQLQGMSSN 477

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
           +  + ++++A    G + + +++F  M    + +P++  +  +++ LS+ G   E   + 
Sbjct: 478 ATCWDSVISAFIQKGQLEDAVDMFSEMLLT-KTRPNLRTWSLLISALSQNGMRQEVTSIC 536

Query: 664 LTM 666
             M
Sbjct: 537 CKM 539



 Score = 99.4 bits (246), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 145/343 (42%), Gaps = 60/343 (17%)

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQP----NLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           + R G +++A+  F      G  P    N   W  +I   ++      A+  F  MLE G
Sbjct: 117 YARCGALDDAERAF------GALPERDRNAFAWAAVIGLWSRAGLHGRALAGFVAMLEAG 170

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           +      +   + AC  +     GRA+HG+  +  +     +++SLVD+Y KCG +  A+
Sbjct: 171 VPADNFVVPTVIKACAGLGLAGTGRAVHGHACKAGVAECVYVMSSLVDLYGKCGEVEDAR 230

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS--- 615
            VFD  P + +  +N M+  Y  +G   EA+ LF  ++ +G+ P  ++  + L+A +   
Sbjct: 231 AVFDAMPERTVVSWNTMLMAYIHNGRIDEAVDLFYEMRVEGVLPTRVSIVSFLSASAGLE 290

Query: 616 --------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC-------------- 653
                   HA  V+ GLE+ V + S      SM HF C V L+                 
Sbjct: 291 AIDGGRQGHAVAVSSGLEMDVILGS------SMIHFYCKVGLVEAAEAVFEQMEGRDAVA 344

Query: 654 -----------GNLDEAL---RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
                      G +D+AL   R +L      D   + S++  CVKS  T L      + +
Sbjct: 345 WNLMIAGYFQDGQIDKALHTCRRMLEADLKFDCVTLASIIMACVKSCITLLGIAAHGYAV 404

Query: 700 QLEPDNPGNYVA-LSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           +   D+     A L + YA++GR   + Q R +      R NP
Sbjct: 405 RNGLDSDKTVAAGLIDLYASTGR---IEQARRVFNATSPR-NP 443



 Score = 41.2 bits (95), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
           DA+D+ S +       N+ +W+ +I    + G+ ++      +MQE   +P   +  + +
Sbjct: 496 DAVDMFSEMLLTKTRPNLRTWSLLISALSQNGMRQEVTSICCKMQEVESAPSPTIYSSAI 555

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
            A      V +G+A+H  V+K G      V  SL++MY    D    R   DG++
Sbjct: 556 LAVKTAASVDYGKAIHACVVKKGLLLSRSVIQSLLNMYSSFDD----RDTMDGLL 606


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 274/860 (31%), Positives = 444/860 (51%), Gaps = 104/860 (12%)

Query: 1   MASFTFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQI 60
           + SF     P  K  H  P  PLK+S+  L  +                 +  + K   +
Sbjct: 12  IPSFYLNCHPVLKKIHQNP--PLKISKFPLKPVETP-------------SLREICKRGSV 56

Query: 61  REA----VDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNE 116
            EA     DL        F +  E Y  +L+ C  K+ +  GQQ+HA ++ +   F  + 
Sbjct: 57  NEAFQSLTDLFANQSPSQFSL-DEAYSSVLELCGSKKALSEGQQVHAHMITSNALF-NSV 114

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED 176
           ++ T+LV  Y KC  L  A +LF  +  K +F+W A+IG     G    +L  + EM+  
Sbjct: 115 FLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVS 174

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G+  D    P +LKACG L    +G  VHG  +K G+   VFVA+S++ MY KC DL  A
Sbjct: 175 GIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGA 234

Query: 237 RKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           R++FD M  + +VV+WNSMI  Y  NG + EA+R+F EM    + P   +  + L A  +
Sbjct: 235 RQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACED 294

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
              + +G   HA  + +   ++  + +++I  Y++ G + +A  +F  M + D ++WN +
Sbjct: 295 SSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSM 354

Query: 356 IASYVQSG---------------------------------------------------- 363
           ++ +VQ+G                                                    
Sbjct: 355 LSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGL 414

Query: 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
            SD+ V +S+VDMYAK   +     +F+ +  +DVV W T++A +A  G    A  LF +
Sbjct: 415 DSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFRE 474

Query: 424 MQLEGISPNIISWNSVILG-------------------------FLRNGQMNEAK----- 453
           +QLEGI  +++  +S++L                           L+NG ++        
Sbjct: 475 VQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNV 534

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           D   +M  L    ++++WT++IS    N   NEA+  F  M ETG++P + ++   LSA 
Sbjct: 535 DYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAA 594

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
             +++L+ G+ IHG+LIR    L   + ++LVDMYA+CG + +++ VF+   +K+L ++ 
Sbjct: 595 ASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWT 654

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           +MI+ Y MHG    A+ LF+ ++ + I PD I F  +L ACSH+GL+NEG      M  +
Sbjct: 655 SMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYE 714

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           +Q++P  EH+ C+V+LL R  +L+EA + +  M  +P A +  +LL  C   +  EL E 
Sbjct: 715 YQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEI 774

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            ++ LL+++P+NPGNYV +SN Y+A  RW +V  VR  MK  GL+KNPGCSWI++G ++H
Sbjct: 775 AAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVH 834

Query: 754 VFVACDRSHPKTEEIYATLA 773
            F+A D+SHP++ EIY+ L+
Sbjct: 835 TFMARDKSHPQSYEIYSKLS 854


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 275/860 (31%), Positives = 444/860 (51%), Gaps = 104/860 (12%)

Query: 1   MASFTFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQI 60
           + SF     P  K  H  P  PLK+S+  L  +                 +  + K   +
Sbjct: 48  IPSFYLNCHPVLKKIHQNP--PLKISKFPLKPVETP-------------SLREICKRGSV 92

Query: 61  REA----VDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNE 116
            EA     DL        F +  E Y  +L+ C  K+ +  GQQ+HA ++ +   F  + 
Sbjct: 93  NEAFQSLTDLFANQSPSQFSL-DEAYSSVLELCGSKKALSEGQQVHAHMITSNALF-NSV 150

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED 176
           ++ T+LV  Y KC  L  A +LF  +  K +F+W A+IG     G    +L  + EM+  
Sbjct: 151 FLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVS 210

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G+  D    P +LKACG L     G  VHG  +K G+   VFVA+S++ MY KC DL  A
Sbjct: 211 GIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGA 270

Query: 237 RKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           R++FD M  + +VV+WNSMI  Y  NG + EA+R+F EM    + P   +  + L A  +
Sbjct: 271 RQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACED 330

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
              + +G   HA  + +   ++  + +++I  Y++ G + +A  +F  M + D ++WN +
Sbjct: 331 SSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSM 390

Query: 356 IASYVQSG---------------------------------------------------- 363
           ++ +VQ+G                                                    
Sbjct: 391 LSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGL 450

Query: 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
            SD+ V +S+VDMYAK   +     +F+ +  +DVV W T++A +A  G    A  LF +
Sbjct: 451 DSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFRE 510

Query: 424 MQLEGISPNIISWNSVILG-------------------------FLRNGQMNEAK----- 453
           +QLEGI  +++  +S++L                           L+NG ++        
Sbjct: 511 VQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNV 570

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           D   +M  L    ++++WT++IS    N   NEA+  F  M ETG++P + ++   LSA 
Sbjct: 571 DYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAA 630

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
             +++L+ G+ IHG+LIR    L   + ++LVDMYA+CG + +++ VF+   +K+L ++ 
Sbjct: 631 ASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWT 690

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           +MI+ Y MHG    A+ LF+ ++ + I PD I F  +L ACSH+GL+NEG      M  +
Sbjct: 691 SMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYE 750

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           +Q++P  EH+ C+V+LL R  +L+EA + +  M  +P A +  +LL  C   +  EL E 
Sbjct: 751 YQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEI 810

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            ++ LL+++P+NPGNYV +SN YAA  RW +V +VR  MK  GL+KNPGCSWI++G ++H
Sbjct: 811 AAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVH 870

Query: 754 VFVACDRSHPKTEEIYATLA 773
            F+A D+SHP++ EIY+ L+
Sbjct: 871 TFMARDKSHPQSYEIYSKLS 890


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/802 (31%), Positives = 425/802 (52%), Gaps = 95/802 (11%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           AVD++  ++ +  Q+    Y ++L+ C+  +D+  G+Q+H  I+++      ++Y    L
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTV--PDQYTVNAL 64

Query: 123 VVFYAKCDALDVASRLFCRLRV--KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
           +  Y +C +++ A +++ +L    + V SW A++    + G  EKAL    +MQ+ G++P
Sbjct: 65  INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D   + + L +C + G + +GR +H   ++ G    V VA+ +++MY KCG +EEAR+VF
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D M  ++VV+W   I GY   G +E A  +F +M  EGV P R++  S+L+A ++  AL 
Sbjct: 185 DKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALK 244

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            GK  H+  +  G E D  +G++++  Y+K G  +D   VF ++V RD++ WN +I    
Sbjct: 245 WGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 304

Query: 361 QSG----------------------------------------------------QSDVV 368
           + G                                                     SD+ 
Sbjct: 305 EGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIG 364

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           V ++++ MY++C  I +A+ VF+ ++ +DV+ W  ++   A  G   EA  ++ +MQ  G
Sbjct: 365 VQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG 424

Query: 429 ISPNIISWNSVI--------LGFLRN---------------------------GQMNEAK 453
           + PN +++ S++        L + R                            G + +A+
Sbjct: 425 VEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDAR 484

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +F +M    +Q +++ +  +I G   ++ G EA+  F  + E G+KP   T    L+AC
Sbjct: 485 QVFDRM----IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNAC 540

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            +  SL   R IH  + +      T +  +LV  YAKCG+   A  VF+    + +  +N
Sbjct: 541 ANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWN 600

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           A+I G A HG   +AL LF+ ++ +G+ PD +TF ++L+ACSHAGL+ EG   F  M  D
Sbjct: 601 AIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQD 660

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
             + P++EH+GC+V+LL R G LDEA  +I TMP   +  I G+LL  C       +AE 
Sbjct: 661 FAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAER 720

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            +E  L+L+ DN   YVALS+ YAA+G W+  +++R +M+++G+ K PG SWIQ+G++LH
Sbjct: 721 AAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLH 780

Query: 754 VFVACDRSHPKTEEIYATLALL 775
            FVA DRSHP++E+IYA L  L
Sbjct: 781 YFVAEDRSHPQSEKIYAELDRL 802



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 229/430 (53%), Gaps = 28/430 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I  L++     EA ++  +M+          Y  LL  CV    ++ G++IH+R+ K G 
Sbjct: 300 IGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAG- 358

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  +  V+  L+  Y++C ++  A  +F ++  K+V SW A+IG   + G   +AL  +
Sbjct: 359 -FTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVY 417

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EMQ+ GV P+     ++L AC +   + +GR +H  V++ G      V ++L++MY  C
Sbjct: 418 QEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMC 477

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +++AR+VFD MI R++VA+N+MI GY  + L +EA+++F  +  EG++P +V+  ++L
Sbjct: 478 GSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINML 537

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           +A AN  +L+  ++ H +    G   D  +G+++++ Y+K G   DA +VF +M +R+++
Sbjct: 538 NACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVI 597

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLA 406
           +WN +I    Q G                  R  +A Q+F  + +     D+V + +LL+
Sbjct: 598 SWNAIIGGSAQHG------------------RGQDALQLFERMKMEGVKPDIVTFVSLLS 639

Query: 407 AYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
           A +  G   E  R F  M  +  I P I  +  ++    R GQ++EA+ +   ++++  Q
Sbjct: 640 ACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEAL---IKTMPFQ 696

Query: 466 PNLITWTTLI 475
            N   W  L+
Sbjct: 697 ANTRIWGALL 706



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 194/391 (49%), Gaps = 27/391 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I  L+K     EA+ +  EM+    +     Y  +L  C     +  G++IH ++
Sbjct: 396 SWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQV 455

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++ G   A + +V   LV  Y+ C ++  A ++F R+  +++ ++ A+IG      L ++
Sbjct: 456 VEAG--LATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKE 513

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  F  +QE+G+ PD     N+L AC   G + + R +H  V K GF     V ++L+ 
Sbjct: 514 ALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVS 573

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
            Y KCG   +A  VF+ M  RNV++WN++I G  Q+G  ++A+++F  M +EGV+P  V+
Sbjct: 574 TYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVT 633

Query: 286 VTSILSASANLDALDEGKQ-----AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
             S+LSA ++   L+EG++     +   A+I  +E    +    ++   + G L++AE +
Sbjct: 634 FVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCM----VDLLGRAGQLDEAEAL 689

Query: 341 FSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
              M  + +   W  L+ +    G  +V VA    +   K + +DNA            V
Sbjct: 690 IKTMPFQANTRIWGALLGACRIHG--NVPVAERAAESSLKLD-LDNA------------V 734

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           ++  L   YA  G    A++L   M+  G++
Sbjct: 735 VYVALSHMYAAAGMWDSAAKLRKLMEQRGVT 765


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 268/813 (32%), Positives = 419/813 (51%), Gaps = 100/813 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I   ++     +A+ +  +M+    Q     Y  +L+ C    ++  G++IHA I+++G 
Sbjct: 191 IGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSG- 249

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  +  VET LV  Y KC +++ A  +F ++  +NV SW  +IG     G  ++A   F
Sbjct: 250 -FQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLF 308

Query: 171 VEMQEDGVSPDNFVLPNVLKA---CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
           ++MQ +G  P+++   ++L A    GAL WV   + VH + +  G    + V ++L+ MY
Sbjct: 309 LQMQREGFIPNSYTYVSILNANASAGALEWV---KEVHSHAVNAGLALDLRVGNALVHMY 365

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            K G +++AR VFDGM  R++ +W  MI G  Q+G  +EA  +F +M   G  P   +  
Sbjct: 366 AKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYL 425

Query: 288 SILSASA--NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           SIL+ASA  +  AL+  K  H  A   G   D  +G+++I+ Y+K G ++DA +VF  M 
Sbjct: 426 SILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMC 485

Query: 346 ERDIVTWNLLIAS-------------YVQSGQ---------------------------- 364
           +RD+++WN ++               ++Q  Q                            
Sbjct: 486 DRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNE 545

Query: 365 -----------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                      SD  V S+ + MY +C  ID+A+ +F+ + +R V  WN ++   A    
Sbjct: 546 VHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRC 605

Query: 414 SGEASRLFYQMQLEGISP------NIIS---------W-------------------NSV 439
             EA  LF QMQ EG  P      NI+S         W                   N++
Sbjct: 606 GREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNAL 665

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           +  + + G +  AK +F  M    V+ N+ TWT +I GL Q+ CG++A   F +ML  GI
Sbjct: 666 VHTYSKCGNVKYAKQVFDDM----VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGI 721

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
            P  TT    LSAC    +L   + +H + +   L     +  +LV MYAKCG+I  A+ 
Sbjct: 722 VPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARS 781

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VFD    +++  +  MI G A HG  +EAL  F  ++ +G  P+  ++  +L ACSHAGL
Sbjct: 782 VFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGL 841

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           V+EG   F+ M  D+ ++P+MEH+ C+V+LL R G L+EA   IL MP +PD    G+LL
Sbjct: 842 VDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALL 901

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
             CV     E+AE+ ++  L+L+P +   YV LSN YAA+G+W +   VR +M+ KG+RK
Sbjct: 902 GACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRK 961

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
            PG SWI++   +H FV  D SHP+++EIYA L
Sbjct: 962 EPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQL 994



 Score =  318 bits (815), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 204/700 (29%), Positives = 343/700 (49%), Gaps = 107/700 (15%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           ++AV +L     +   I    Y  +LQ C+ + D+   +Q+H  I+K+G    +N YV  
Sbjct: 100 KDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSG--MEQNLYVAN 157

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
           KL+  Y +C  L  A ++F +L  KN++ W  +IG     G +E A+  + +M+++   P
Sbjct: 158 KLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQP 217

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           +     ++LKAC     + +G+ +H ++++ GF   V V ++L++MY KCG +E+A+ +F
Sbjct: 218 NEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIF 277

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D M+ RNV++W  MI G    G  +EA  +F +M  EG  P   +  SIL+A+A+  AL+
Sbjct: 278 DKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALE 337

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
             K+ H+ AV  G+ LD  +G+++++ Y+K G ++DA VVF  M ERDI +W ++I    
Sbjct: 338 WVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLA 397

Query: 361 QSGQSD-----------------------VVVASSI------------------------ 373
           Q G+                         ++ AS+I                        
Sbjct: 398 QHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISD 457

Query: 374 -------VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                  + MYAKC  ID+A+ VF+ +  RDV+ WN ++   A  G   EA  +F QMQ 
Sbjct: 458 LRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQ 517

Query: 427 EGISPNIISWNSV-----------------------------------ILGFLRNGQMNE 451
           EG+ P+  ++ S+                                   I  ++R G +++
Sbjct: 518 EGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDD 577

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A+ +F     L V+ ++ TW  +I G  Q  CG EA+  F +M   G  P  TT    LS
Sbjct: 578 ARLLF---DKLSVR-HVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILS 633

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           A  D  +L   + +H +     L +   +  +LV  Y+KCGN+  AK+VFD    + +  
Sbjct: 634 ANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTT 692

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF---- 627
           +  MI G A HG   +A + F  + ++GI PD+ T+ +IL+AC+  G +    E+     
Sbjct: 693 WTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAV 752

Query: 628 -VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
             G+ SD +V  ++ H      + ++CG++D+A  V   M
Sbjct: 753 SAGLVSDLRVGNALVH------MYAKCGSIDDARSVFDDM 786


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/726 (33%), Positives = 417/726 (57%), Gaps = 37/726 (5%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +   L+ C   R    G+Q+H++++  G  F  + +V   L+  YAKCD  +   ++F  
Sbjct: 279 FASALRVCGALRSRDGGKQVHSKLIACG--FKGDTFVGNALIDMYAKCDDEESCLKVFDE 336

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  +N  +W +II    + G    AL+ F+ MQE G   + F L ++L A   L  +G G
Sbjct: 337 MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKG 396

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R +HG++++   +  + + S+L+DMY KCG +EEA +VF  ++ RN V++N+++ GYVQ 
Sbjct: 397 RELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQE 456

Query: 262 GLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           G  EEA+ ++++M  E G++P + + T++L+  AN    ++G+Q HA  +   +  + ++
Sbjct: 457 GKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIV 516

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV----------- 369
            + +++ YS+ G L  A+ +F+RM ER+  +WN +I  Y Q+G++   +           
Sbjct: 517 ETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGI 576

Query: 370 ---ASSIVDMYAKCERIDNAKQ--VFNSIILRDV-----VLWNTLLAAYADLGRSGEASR 419
                S+  M + C  + ++++    ++ I+R+      +L   L+  YA  G    A +
Sbjct: 577 KPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWK 636

Query: 420 LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           ++ Q     I  ++I  N ++  F+ +G+ N+AK++F QM+    Q N   W ++++G  
Sbjct: 637 VYDQT----IKKDVILNNVMVSAFVNSGRANDAKNLFDQME----QRNTALWNSILAGYA 688

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
                 E+   F EMLE+ I+    T+   ++ C+ + +L +G  +H  +I+      + 
Sbjct: 689 NKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSV 748

Query: 540 IV-TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
           ++ T+LVDMY+KCG I +A+ VFD    K +  +NAMISGY+ HG + EAL L++ + +K
Sbjct: 749 VLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKK 808

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           G+ P+ +TF  IL+ACSH GLV EGL +F  M  D+ ++   EH+ C+V+LL R G L++
Sbjct: 809 GMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLED 868

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           A   +  MP +P+    G+LL  C    + ++    ++ L +L+P NPG YV +SN YAA
Sbjct: 869 AKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAA 928

Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMH 778
           +GRW EV  +R +MK KG++K+PG SWI+I  E+ +F A  ++HPKTEEIY  L     H
Sbjct: 929 AGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLR----H 984

Query: 779 VRLVSK 784
           + L SK
Sbjct: 985 LTLQSK 990



 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 182/646 (28%), Positives = 306/646 (47%), Gaps = 101/646 (15%)

Query: 77  IGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALD--- 133
           + P  Y  L+Q C+       G+ IH +++ NG  +  + Y+ TK+++ YA+   LD   
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNG--YNPDAYLMTKILMLYARSGCLDDLC 126

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACG 193
            A +LF  +  +N+ +W  +I    RV    + L  +  M+  G   D F  P+V+KAC 
Sbjct: 127 YARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACI 186

Query: 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
           A+  +G  R +   V+K G +  +FV  +L+D Y + G +++A    D +   +VV WN+
Sbjct: 187 AMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNA 246

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           +I GYV+    EEA  +F  M   GV P   +  S L     L + D GKQ H+  +  G
Sbjct: 247 VIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACG 306

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ--------- 364
            + D  +G+++I+ Y+K    E    VF  M ER+ VTWN +I++  Q G          
Sbjct: 307 FKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFL 366

Query: 365 -------------------------------------------SDVVVASSIVDMYAKCE 381
                                                      SD+++ S++VDMY+KC 
Sbjct: 367 RMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCG 426

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISP--------- 431
            ++ A QVF S++ R+ V +N LLA Y   G++ EA  L++ MQ E GI P         
Sbjct: 427 MVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLL 486

Query: 432 --------------------------NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
                                     NII    ++  +   G++N AK++F +M     +
Sbjct: 487 TLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRM----AE 542

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            N  +W ++I G  QN    EA+  F++M   GIKP   +++  LS+C  ++  + GR +
Sbjct: 543 RNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGREL 602

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           H +++R+ +     +   LVDMYAKCG++  A +V+D +  K++ + N M+S +   G A
Sbjct: 603 HNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRA 662

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
            +A  LF  ++Q+    ++  + +IL   ++ GL  E    F+ M 
Sbjct: 663 NDAKNLFDQMEQR----NTALWNSILAGYANKGLKKESFNHFLEML 704



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 50/354 (14%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHA 103
           S+   I    +  + +EA+ L  +M+     I P+ +    +L  CV   D   G+++H 
Sbjct: 547 SWNSMIEGYQQNGETQEALRLFKQMQLNG--IKPDCFSLSSMLSSCVSLSDSQKGRELHN 604

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASR-------------------------- 137
            I++N         ++  LV  YAKC ++D A +                          
Sbjct: 605 FIVRNT--MEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRA 662

Query: 138 -----LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC 192
                LF ++  +N   W +I+      GL +++   F+EM E  +  D   +  ++  C
Sbjct: 663 NDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLC 722

Query: 193 GALGWVGFGRAVHGYVLKVGFDGC-VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
            +L  +  G  +H  ++K GF  C V + ++L+DMY KCG + +AR VFD M  +N+V+W
Sbjct: 723 SSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSW 782

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N+MI GY ++G ++EA+ ++ EM  +G+ P  V+  +ILSA ++   ++EG     + + 
Sbjct: 783 NAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEG-----LRIF 837

Query: 312 NGMELD-NVLGSS-----IINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
             M+ D N+   +     +++   + G LEDA+    +M +E ++ TW  L+ +
Sbjct: 838 TSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGA 891


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/825 (32%), Positives = 431/825 (52%), Gaps = 100/825 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           ++ LSK  Q+ EA+ +L  +   + QI  + Y  LLQ C+  +++  G++IH  I  +  
Sbjct: 76  LNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKI 135

Query: 110 --DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
             D F  N      L+  YAKC   + A ++F  +  K+V+SW  ++G   +    E+A 
Sbjct: 136 QPDIFMWN-----MLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAF 190

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
               +M +DGV PD +    +L AC     V  G  +   +L  G+D  +FV ++LI+M+
Sbjct: 191 RLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMH 250

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            KCG +++A KVF+ +  R+++ W SMI G  ++   ++A  +F  M  EGV+P +V+  
Sbjct: 251 IKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFV 310

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S+L A  + +AL++GK+ HA     G++ +  +G+++++ Y+K G +EDA  VF+ +  R
Sbjct: 311 SLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR 370

Query: 348 DIVTWNLLIASYVQSGQ------------------------------------------- 364
           ++V+W  +IA + Q G+                                           
Sbjct: 371 NVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIH 430

Query: 365 ---------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                    +D  V ++++ MYAKC  + +A+ VF  I  ++VV WN ++ AY    +  
Sbjct: 431 DRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYD 490

Query: 416 EASRLFYQMQLEGISPNIISWNSVI----------LG----------------------- 442
            A   F  +  EGI P+  ++ S++          LG                       
Sbjct: 491 NAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALV 550

Query: 443 --FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             F+  G +  A ++F  M     + +L++W T+I+G  Q+     A  +F+ M E+G+K
Sbjct: 551 SMFVNCGDLMSAMNLFNDMP----ERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVK 606

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P   T T  L+AC    +L  GR +H  +    L     + T L+ MY KCG+I  A  V
Sbjct: 607 PDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLV 666

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F   P K +  + +MI+GYA HG   EAL LF  +QQ+G+ PD ITF   L+AC+HAGL+
Sbjct: 667 FHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLI 726

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EGL  F  M  D  ++P MEH+GC+V+L  R G L EA+  I  M   PD+ + G+LL 
Sbjct: 727 KEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLG 785

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C    + ELAE +++  L+L+P++ G YV LSN YAA+G W EV+++R +M ++G+ K 
Sbjct: 786 ACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKK 845

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           PG SWI++   +H+F + D++HP+ EEI+A L  L M ++ +  V
Sbjct: 846 PGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYV 890



 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/611 (24%), Positives = 288/611 (47%), Gaps = 92/611 (15%)

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
           +KN     A +    + G   +A++  + +    +        ++L+ C     +G G  
Sbjct: 66  IKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGER 125

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +H ++        +F+ + LI MY KCG+   A+++FD M  ++V +WN ++ GYVQ+  
Sbjct: 126 IHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRR 185

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
            EEA R+  +M  +GV+P + +   +L+A A+   +D+G +  ++ +  G + D  +G++
Sbjct: 186 YEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTA 245

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ------------------- 364
           +IN + K G ++DA  VF+ +  RD++TW  +I    +  Q                   
Sbjct: 246 LINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPD 305

Query: 365 ---------------------------------SDVVVASSIVDMYAKCERIDNAKQVFN 391
                                            +++ V ++++ MY KC  +++A +VFN
Sbjct: 306 KVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFN 365

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------- 440
            +  R+VV W  ++A +A  GR  EA   F +M   GI PN +++ S++           
Sbjct: 366 LVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQ 425

Query: 441 ----------LGFLRN--------------GQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
                      G++ +              G + +A+++F ++     + N++ W  +I+
Sbjct: 426 GRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERIS----KQNVVAWNAMIT 481

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
              Q+   + A+  FQ +L+ GIKP ++T T  L+ C    +L  G+ +   +IR     
Sbjct: 482 AYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFES 541

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              I  +LV M+  CG++  A  +F+  P ++L  +N +I+G+  HG    A   FK +Q
Sbjct: 542 DLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQ 601

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           + G+ PD ITFT +LNAC+    + EG  L   + ++  +   +     ++++ ++CG++
Sbjct: 602 ESGVKPDQITFTGLLNACASPEALTEGRRLH-ALITEAALDCDVVVGTGLISMYTKCGSI 660

Query: 657 DEALRVILTMP 667
           D+A  V   +P
Sbjct: 661 DDAHLVFHNLP 671



 Score =  199 bits (505), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 222/468 (47%), Gaps = 54/468 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+  ++  ++ EA     +M     +     +  +L  C     +  G+QIH RI
Sbjct: 374 SWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRI 433

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K G  +  ++ V T L+  YAKC +L  A  +F R+  +NV +W A+I    +    + 
Sbjct: 434 IKAG--YITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDN 491

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  F  + ++G+ PD+    ++L  C +   +  G+ V   +++ GF+  + + ++L+ 
Sbjct: 492 AVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVS 551

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           M+  CGDL  A  +F+ M  R++V+WN++I G+VQ+G N+ A   F  M   GV+P +++
Sbjct: 552 MFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQIT 611

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
            T +L+A A+ +AL EG++ HA+     ++ D V+G+ +I+ Y+K G ++DA +VF  + 
Sbjct: 612 FTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP 671

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           ++++ +W  +I  Y Q G                                          
Sbjct: 672 KKNVYSWTSMITGYAQHG------------------------------------------ 689

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
                  R  EA  LF QMQ EG+ P+ I++   +      G + E    F  M+   ++
Sbjct: 690 -------RGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFNIE 742

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           P +  +  ++    +    +EA+ F  +M    +KP +      L AC
Sbjct: 743 PRMEHYGCMVDLFGRAGLLHEAVEFINKM---QVKPDSRLWGALLGAC 787


>gi|242053565|ref|XP_002455928.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
 gi|241927903|gb|EES01048.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
          Length = 537

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/536 (44%), Positives = 314/536 (58%), Gaps = 75/536 (13%)

Query: 10  PNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLT- 68
           P+P   H  P+                D S  +   S+  Q    + E  +R+A  L+  
Sbjct: 17  PHPSKPHDAPRP---------------DASLHAALASFSQQ----AHEGGLRDAFALVAR 57

Query: 69  -EMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYA 127
            E +     +GPE+Y  LLQ CV    +  G+Q+HA ++K G ++ RN YV TKL VFYA
Sbjct: 58  AERQSSPAAVGPEVYTSLLQCCVTAGSLRAGRQVHAALVKRGPYYCRNAYVGTKLTVFYA 117

Query: 128 KCDALDVASRLFCRL--RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           +C ALD A R    L  R +N F+WAA+IGL  R GL  +AL GFV M E GV  DNFV 
Sbjct: 118 RCGALDDAERALGALPERHRNAFAWAAVIGLWSRAGLHARALAGFVAMLEAGVPADNFVA 177

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
           P VLKAC  LG  G GRAVHGY  K G   CV+V SSL+D YGKCG++E+AR VFD M  
Sbjct: 178 PTVLKACAGLGLSGAGRAVHGYAWKAGVAECVYVMSSLVDFYGKCGEVEDARAVFDAMPE 237

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           R VV WN+M++ Y+ NG  +EA+ +FYEM +EGV PTRVS+ S LSASA+L+A+D G+Q 
Sbjct: 238 RTVVTWNTMLMAYIHNGRIDEAVELFYEMRVEGVLPTRVSILSFLSASADLEAIDGGRQG 297

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ- 364
           HAVAV +G+E+D +LGSS+INFY KVGL+E AE VF +M ERD VTWNL+IA Y Q GQ 
Sbjct: 298 HAVAVSSGLEMDVILGSSMINFYCKVGLVEAAEAVFEQMKERDAVTWNLMIAGYFQDGQI 357

Query: 365 ---------------------------------------------------SDVVVASSI 373
                                                              SD  VAS +
Sbjct: 358 DKAFDTCRRMLEANLKFDCVTLASIIMACLKSCIMLVGIAAHGYAVRNGLHSDKTVASGL 417

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           +DMYA   RI++A++VFN++  R++V+W  +++AY D G + EA  L  QMQLEGISP+ 
Sbjct: 418 IDMYASAGRIEHARRVFNAMCPRNLVIWKVMISAYVDCGINSEARNLLNQMQLEGISPSA 477

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
             W+ VI  F+RNGQ  +A D+F +M     +PNL TW+ LIS L+QN    E  L
Sbjct: 478 ACWDLVISAFIRNGQFEDALDIFSEMLLTKTRPNLRTWSLLISALSQNGMHQEQFL 533



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 141/532 (26%), Positives = 230/532 (43%), Gaps = 93/532 (17%)

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC--VFVASSL 223
           AL+   E Q    +    V  ++L+ C   G +  GR VH  ++K G   C   +V + L
Sbjct: 53  ALVARAERQSSPAAVGPEVYTSLLQCCVTAGSLRAGRQVHAALVKRGPYYCRNAYVGTKL 112

Query: 224 IDMYGKCGDLEEARKVFDGMIAR--NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
              Y +CG L++A +    +  R  N  AW ++I  + + GL+  A+  F  M   GV  
Sbjct: 113 TVFYARCGALDDAERALGALPERHRNAFAWAAVIGLWSRAGLHARALAGFVAMLEAGVPA 172

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
                 ++L A A L     G+  H  A   G+                      AE V+
Sbjct: 173 DNFVAPTVLKACAGLGLSGAGRAVHGYAWKAGV----------------------AECVY 210

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
                                      V SS+VD Y KC  +++A+ VF+++  R VV W
Sbjct: 211 ---------------------------VMSSLVDFYGKCGEVEDARAVFDAMPERTVVTW 243

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS----------------------- 438
           NT+L AY   GR  EA  LFY+M++EG+ P  +S  S                       
Sbjct: 244 NTMLMAYIHNGRIDEAVELFYEMRVEGVLPTRVSILSFLSASADLEAIDGGRQGHAVAVS 303

Query: 439 ------VILG------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                 VILG      + + G +  A+ +F QM+    + + +TW  +I+G  Q+   ++
Sbjct: 304 SGLEMDVILGSSMINFYCKVGLVEAAEAVFEQMK----ERDAVTWNLMIAGYFQDGQIDK 359

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           A    + MLE  +K    T+   + AC     +  G A HGY +R+ L     + + L+D
Sbjct: 360 AFDTCRRMLEANLKFDCVTLASIIMACLKSCIMLVGIAAHGYAVRNGLHSDKTVASGLID 419

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MYA  G I  A+RVF+    + L ++  MIS Y   G+  EA  L   +Q +GI P +  
Sbjct: 420 MYASAGRIEHARRVFNAMCPRNLVIWKVMISAYVDCGINSEARNLLNQMQLEGISPSAAC 479

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           +  +++A    G   + L++F  M    + +P++  +  +++ LS+ G   E
Sbjct: 480 WDLVISAFIRNGQFEDALDIFSEMLLT-KTRPNLRTWSLLISALSQNGMHQE 530


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 283/868 (32%), Positives = 435/868 (50%), Gaps = 112/868 (12%)

Query: 1   MASFTFTTPPNP--KFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEK 58
           MA+   + PPNP  KFS T P     +S    T L++                  L KE 
Sbjct: 1   MATAVLSFPPNPYKKFSTTPPS----ISPPDPTSLKQ------------------LCKEG 38

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
            +R+A+ LLT  +        E YG +L     K+ +  G Q+HA  +  G     + ++
Sbjct: 39  NLRQALRLLTS-QTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFL 97

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ---E 175
            TKL+  Y KC  +  A  LF  +  + VFSW A+IG     G + +AL  +  M+    
Sbjct: 98  ATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAA 157

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
            GV+PD   L +VLKA G  G    G  VHG  +K G D   FVA++LI MY KCG L+ 
Sbjct: 158 SGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDS 217

Query: 236 ARKVFDGMI-ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
           A +VF+ M   R+V +WNSMI G +QNG+  +A+ +F  M    +     +   +L    
Sbjct: 218 AMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCT 277

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
            L  L+ G++ HA  + +G E+ N+  ++++  Y+K G ++ A  VF  + E+D ++WN 
Sbjct: 278 ELAQLNLGRELHAALLKSGSEV-NIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNS 336

Query: 355 LIASYVQSG--------------------------------------------------- 363
           +++ YVQ+G                                                   
Sbjct: 337 MLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQR 396

Query: 364 -QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
             SD  V ++++DMY KC  I+ +  VF+ + ++D + W T++  YA   R  EA  +F 
Sbjct: 397 LDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFR 456

Query: 423 QMQLEGISPNIISWNSVILG----------------FLRNGQM-----NEAKDMF----- 456
           + Q EGI  + +   S++                   +RNG +     N   D++     
Sbjct: 457 EAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGE 516

Query: 457 ----LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
               L+M     Q +++TWT++I+    +   NEA++ F EM  T ++P +  +   L A
Sbjct: 517 VYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGA 576

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
              ++SL  G+ +HG+LIR +  +   IV+SLVDMY+ CG++  A +VF+    K++ ++
Sbjct: 577 IGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLW 636

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
            AMI+   MHG   +A+ LFK + Q G+ PD ++F  +L ACSH+ LVNEG      M S
Sbjct: 637 TAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMS 696

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
            ++++P  EH+ CVV+LL R G  +EA   I +MP  P + +  SLL  C      ELA 
Sbjct: 697 TYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAV 756

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
             +  LL+LEPDNPGNYV +SN +A  G+WN   +VR  + E+GLRK+P CSWI+IG  +
Sbjct: 757 VAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNV 816

Query: 753 HVFVACDRSHPKTEEIYATLALLGMHVR 780
           H F   D SH   E I   LA +   +R
Sbjct: 817 HTFTTRDNSHRDAERINLKLAEITERLR 844


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/821 (30%), Positives = 428/821 (52%), Gaps = 93/821 (11%)

Query: 46   SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
            SY   +   +++  ++E + L  +M           Y  LL        +  G++IH   
Sbjct: 196  SYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLT 255

Query: 106  LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            ++ G     +  V T LV    +C  +D A + F     ++V  + A+I    + G + +
Sbjct: 256  VEEG--LNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVE 313

Query: 166  ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
            A   +  M+ DGV+ +     ++L AC     +  G+ +H ++ + G    V + ++LI 
Sbjct: 314  AFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALIS 373

Query: 226  MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
            MY +CGDL +AR++F  M  R++++WN++I GY +     EA+R++ +M  EGV+P RV+
Sbjct: 374  MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 286  VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
               +LSA AN  A  +GK  H   + +G++ +  L ++++N Y + G L +A+ VF    
Sbjct: 434  FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 346  ERDIVTWNLLIASYVQSG------------------------------------------ 363
             RD+++WN +IA + Q G                                          
Sbjct: 494  ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 364  ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                      Q DV + +++++MY +C  + +A+ VF+S+  RDV+ W  ++   AD G 
Sbjct: 554  IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613

Query: 414  SGEASRLFYQMQLEGISP----------------------NIISW-------------NS 438
              +A  LF+QMQ EG  P                       +I++             N+
Sbjct: 614  DMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNA 673

Query: 439  VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
            +I  + ++G M +A+++F +M S     ++++W  +I+G  QN  G  A+ F  +M E  
Sbjct: 674  LISAYSKSGSMTDAREVFDKMPSR----DIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQD 729

Query: 499  IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
            + P+  +    L+AC+  ++L  G+ +H  +++  L     +  +L+ MYAKCG+  +A+
Sbjct: 730  VVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQ 789

Query: 559  RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
             VFD    K +  +NAMI+ YA HGLA +AL  F  ++++GI PD  TFT+IL+AC+HAG
Sbjct: 790  EVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAG 849

Query: 619  LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
            LV EG ++F  M S++ V P++EH+GC+V LL R     EA  +I  MP  PDA +  +L
Sbjct: 850  LVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETL 909

Query: 679  LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
            L  C       LAE+ + + L+L   NP  Y+ LSN YAA+GRW++V+++R +M+ +G+R
Sbjct: 910  LGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIR 969

Query: 739  KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
            K PG SWI++   +H F+A DRSHP+T EIYA L  L + +
Sbjct: 970  KEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEM 1010



 Score =  295 bits (755), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 181/674 (26%), Positives = 328/674 (48%), Gaps = 96/674 (14%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  LLQ C  KR +   ++IHA++++   +   + ++   L+  Y KC ++  A ++F  
Sbjct: 30  YVALLQNCTRKRLLPEAKRIHAQMVEA--WVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  ++V SW ++I    + G  +KA   F EMQ  G  P+     ++L AC +   +  G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H  ++K G+     V +SL+ MYGKCGDL  AR+VF G+  R+VV++N+M+  Y Q 
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
              +E + +F +M+ EG+ P +V+  ++L A      LDEGK+ H + V  G+  D  +G
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----------------- 364
           ++++    + G ++ A+  F    +RD+V +N LIA+  Q G                  
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVA 327

Query: 365 -----------------------------------SDVVVASSIVDMYAKCERIDNAKQV 389
                                              SDV + ++++ MYA+C  +  A+++
Sbjct: 328 LNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAREL 387

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW------------- 436
           F ++  RD++ WN ++A YA     GEA RL+ QMQ EG+ P  +++             
Sbjct: 388 FYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAY 447

Query: 437 ----------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
                                 N+++  + R G + EA+++F   Q+  V    I+W ++
Sbjct: 448 ADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDV----ISWNSM 503

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           I+G  Q+     A   FQEM    ++P   T    LS C +  +L  G+ IHG +    L
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGL 563

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
            L   +  +L++MY +CG++  A+ VF     +++  + AMI G A  G  ++A+ LF  
Sbjct: 564 QLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQ 623

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF-SDHQVKPSMEHFGCVVNLLSRC 653
           +Q +G  P   TF++IL  C+ +  ++EG ++   +  S +++   + +   +++  S+ 
Sbjct: 624 MQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN--ALISAYSKS 681

Query: 654 GNLDEALRVILTMP 667
           G++ +A  V   MP
Sbjct: 682 GSMTDAREVFDKMP 695



 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 179/700 (25%), Positives = 337/700 (48%), Gaps = 94/700 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  +++   ++A  L  EM+   F      Y  +L  C    ++  G++IH++I+K G 
Sbjct: 100 ISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAG- 158

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            + R+  V+  L+  Y KC  L  A ++F  +  ++V S+  ++GL  +    ++ L  F
Sbjct: 159 -YQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLF 217

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M  +G+SPD     N+L A      +  G+ +H   ++ G +  + V ++L+ M  +C
Sbjct: 218 GQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRC 277

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           GD++ A++ F G   R+VV +N++I    Q+G N EA   +Y M  +GV   R +  SIL
Sbjct: 278 GDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSIL 337

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           +A +   AL+ GK  H+    +G   D  +G+++I+ Y++ G L  A  +F  M +RD++
Sbjct: 338 NACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLI 397

Query: 351 TWNLLIASY--------------------------------------------------- 359
           +WN +IA Y                                                   
Sbjct: 398 SWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDI 457

Query: 360 VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
           ++SG +S+  +A+++++MY +C  +  A+ VF     RDV+ WN+++A +A  G    A 
Sbjct: 458 LRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAY 517

Query: 419 RLFYQMQLEGISPNIISWNSVILG-----------------------------------F 443
           +LF +MQ E + P+ I++ SV+ G                                   +
Sbjct: 518 KLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMY 577

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
           +R G + +A+++F  +Q      ++++WT +I G        +AI  F +M   G +P  
Sbjct: 578 IRCGSLQDARNVFHSLQ----HRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVK 633

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
           +T +  L  CT  A L  G+ +  Y++     L T +  +L+  Y+K G++  A+ VFD 
Sbjct: 634 STFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDK 693

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
            PS+++  +N +I+GYA +GL   A+     +Q++ + P+  +F ++LNACS    + EG
Sbjct: 694 MPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEG 753

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
             +   +    +++  +     ++++ ++CG+  EA  V 
Sbjct: 754 KRVHAEIVK-RKLQGDVRVGAALISMYAKCGSQGEAQEVF 792



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 224/448 (50%), Gaps = 24/448 (5%)

Query: 33  LRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQG 88
           L E+ N +E        S+   I+  ++      A  L  EM+    +     +  +L G
Sbjct: 482 LMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSG 541

Query: 89  CVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVF 148
           C     +  G+QIH RI ++G     N  +   L+  Y +C +L  A  +F  L+ ++V 
Sbjct: 542 CKNPEALELGKQIHGRITESGLQLDVN--LGNALINMYIRCGSLQDARNVFHSLQHRDVM 599

Query: 149 SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208
           SW A+IG     G   KA+  F +MQ +G  P      ++LK C +   +  G+ V  Y+
Sbjct: 600 SWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYI 659

Query: 209 LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
           L  G++    V ++LI  Y K G + +AR+VFD M +R++V+WN +I GY QNGL + A+
Sbjct: 660 LNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAV 719

Query: 269 RVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328
              Y+M  + V P + S  S+L+A ++  AL+EGK+ HA  V   ++ D  +G+++I+ Y
Sbjct: 720 EFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMY 779

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388
           +K G   +A+ VF  ++E+++VTWN +I +Y Q G     +AS  +  +   E+      
Sbjct: 780 AKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHG-----LASKALGFFNCMEK------ 828

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNG 447
                I  D   + ++L+A    G   E  ++F  M+ E G+ P I  +  ++    R  
Sbjct: 829 ---EGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRAR 885

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           +  EA+ +  QM      P+   W TL+
Sbjct: 886 RFQEAETLINQMP---FPPDAAVWETLL 910



 Score =  169 bits (429), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 217/512 (42%), Gaps = 87/512 (16%)

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
            E  R +  ++L        L E K+ HA  V   +  D  L + +IN Y K   + DA 
Sbjct: 23  TETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 339 VVFSRMVERDIVTWNLLIASYVQSG----------------------------------- 363
            VF  M  RD+++WN LI+ Y Q G                                   
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 364 -----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                            Q D  V +S++ MY KC  +  A+QVF  I  RDVV +NT+L 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
            YA      E   LF QM  EGISP+ +++ +++  F     ++E K +       G+  
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNS 262

Query: 467 NL-------------------------------ITWTTLISGLTQNSCGNEAILFFQEML 495
           ++                               + +  LI+ L Q+    EA   +  M 
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
             G+  + TT    L+AC+   +L  G+ IH ++          I  +L+ MYA+CG++ 
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           +A+ +F   P ++L  +NA+I+GYA      EA+ L+K +Q +G+ P  +TF ++L+AC+
Sbjct: 383 KARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA 442

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           ++    +G  +   +     +K +      ++N+  RCG+L EA  V        D    
Sbjct: 443 NSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISW 500

Query: 676 GSLLSTCVKSNETELAEYISEHLL--QLEPDN 705
            S+++   +    E A  + + +   +LEPDN
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 269/811 (33%), Positives = 423/811 (52%), Gaps = 93/811 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +  L KE  +R+A+  LT           E YG +L     +R    G+Q+HA  +  G 
Sbjct: 33  LKRLCKEGDLRQALRQLTTRA----PPAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGS 88

Query: 111 FFARNE-YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
               ++ ++ TKLV  Y +C  +D A RLF  +  + VFSW A++G     G + +A+  
Sbjct: 89  LNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRV 148

Query: 170 FVEMQED---GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
           +  M+     G +PD   L +VLKACGA G    G  VHG  +KVG D    VA++LI M
Sbjct: 149 YGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGM 208

Query: 227 YGKCGDLEEARKVFDGMI--ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
           Y KCG L+ A +VF+ +   AR+V +WNS++ G VQNG   EA+ +F  M   G      
Sbjct: 209 YAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSY 268

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +  ++L   A L  L  G++ HA  +  G EL N+  ++++  Y+K G ++ A  VF ++
Sbjct: 269 TSVAVLQVCAELGLLSLGRELHAALLKCGSEL-NIQCNALLVMYAKYGRVDSALRVFGQI 327

Query: 345 VERDIVTWNLLIASYVQSG----------------------------------------- 363
            E+D ++WN +++ YVQ+                                          
Sbjct: 328 AEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGR 387

Query: 364 -----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                       +D+ V ++++DMY KC  I+ + +VF S+ +RD + W T+LA +A   
Sbjct: 388 EFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSS 447

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVI---LGF-------------LRNGQM-----NE 451
           R  EA  +  ++Q EGI  + +   S++    G              +RNG +     N 
Sbjct: 448 RHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENR 507

Query: 452 AKDMFLQM----QSLGV-----QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
             D++ +      SL +     + ++++WT++I+  T N   N A+  F EM +  I+P 
Sbjct: 508 LIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPD 567

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
           +  +   L A   ++SL  G+ +HG+LIR +  +  P+V+SLVDMY+ CG+++ A RVF+
Sbjct: 568 SVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFE 627

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
            +  K++ ++ AMI+   MHG   +A+ LFK + Q G+ PD ++F  +L ACSH+ LV E
Sbjct: 628 RAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEE 687

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G      M S +++KP  EH+ CVV++L R G  +EA   I TMP DP + +  +LL  C
Sbjct: 688 GKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGAC 747

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
                  LA   +  LL+LEPDNPGNY+ +SN +A  G+WN   + R  M E+GLRKNP 
Sbjct: 748 RVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPA 807

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           CSWI+IG  +H F + D  H  +E I+  L+
Sbjct: 808 CSWIEIGNNIHTFTSGDYCHRDSEAIHLKLS 838


>gi|326519576|dbj|BAK00161.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 608

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/585 (41%), Positives = 346/585 (59%), Gaps = 66/585 (11%)

Query: 18  KPQKPLKLSQTH--LTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNF 75
           KP +  + +  H  L  L +  + + SL +  F  +S   ++     AV           
Sbjct: 16  KPHESPRPASLHAALASLSQQGSDHGSL-RDAFALVSRAERQSSPGAAV----------- 63

Query: 76  QIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVA 135
            +GPE+Y  LLQ CV    +  G+Q+HA  +K G ++ R+ Y+ TKL VFYA+C AL  A
Sbjct: 64  AVGPEVYVSLLQCCVAAGSLRAGRQVHAAAVKRGPYYCRHAYIGTKLAVFYARCGALADA 123

Query: 136 SRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
            R+F  L  KN F+WAA+IGL  R GL  +AL G+V+M + GV  DNFV+PNVLK+C  +
Sbjct: 124 ERVFDALPKKNAFAWAAVIGLWSRAGLHSRALDGYVDMLQAGVPVDNFVVPNVLKSCAGI 183

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
           G VG GRA+HGY  K GF  CV+V SSL+D YGKCG +++AR+VFD M    VV WNSM+
Sbjct: 184 GMVGTGRALHGYAWKAGFRECVYVLSSLVDFYGKCGKVDDAREVFDAMTETTVVTWNSML 243

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
           +GY+ NG  ++A+ +FY+M +EGV PTRVS+ S LSASA+ +A D G+Q HA+AV  G+E
Sbjct: 244 MGYINNGRIDDAVELFYQMRVEGVLPTRVSLLSFLSASADFEAPDWGRQGHAMAVSGGLE 303

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----------- 364
           +D +LGSSIINFY KVGL+E AE VF +MVERD VTWNL+IA Y+Q GQ           
Sbjct: 304 MDVILGSSIINFYCKVGLVEAAEAVFEQMVERDAVTWNLMIAGYLQDGQTDKAFITCRKM 363

Query: 365 -----------------------------------------SDVVVASSIVDMYAKCERI 383
                                                    SD  VA  ++++Y   E+ 
Sbjct: 364 LESGLRFDCVTLASIIMACMTSSSMEMGRVAHGYAVRNNLESDKAVACGLIELYMSSEKT 423

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           ++A+ +F+ +  RD+V+   +++AYAD G S +A  + YQMQ EGISP    W+SVI  F
Sbjct: 424 EHARGLFDVMSGRDMVMCKVMISAYADRGMSCQALEVLYQMQHEGISPTAACWDSVISAF 483

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
           ++N Q++EA ++F +M     +PNL TW+ LISGL++N    E +    +M E    PS 
Sbjct: 484 MKNEQIDEALEIFSEMLLTKTRPNLRTWSLLISGLSRNGMHCEVMNLCCKMHEVEPAPSP 543

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
           T  + AL A    AS++ G+A+H  +++  L L   ++ SL++MY
Sbjct: 544 TIFSAALVAMKAAASVQYGKAMHACIVKKGLLLSKSVIQSLLNMY 588



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 213/468 (45%), Gaps = 94/468 (20%)

Query: 288 SILSASANLDALDEGKQAHAVAVINGMEL--DNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           S+L       +L  G+Q HA AV  G        +G+ +  FY++ G L DAE VF  + 
Sbjct: 72  SLLQCCVAAGSLRAGRQVHAAAVKRGPYYCRHAYIGTKLAVFYARCGALADAERVFDALP 131

Query: 346 ERDIVTWNLLIASY----------------VQSG-------------------------- 363
           +++   W  +I  +                +Q+G                          
Sbjct: 132 KKNAFAWAAVIGLWSRAGLHSRALDGYVDMLQAGVPVDNFVVPNVLKSCAGIGMVGTGRA 191

Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                     +  V V SS+VD Y KC ++D+A++VF+++    VV WN++L  Y + GR
Sbjct: 192 LHGYAWKAGFRECVYVLSSLVDFYGKCGKVDDAREVFDAMTETTVVTWNSMLMGYINNGR 251

Query: 414 SGEASRLFYQMQLEGISPNIIS---------------WN--------------SVILG-- 442
             +A  LFYQM++EG+ P  +S               W                VILG  
Sbjct: 252 IDDAVELFYQMRVEGVLPTRVSLLSFLSASADFEAPDWGRQGHAMAVSGGLEMDVILGSS 311

Query: 443 ----FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
               + + G +  A+ +F QM    V+ + +TW  +I+G  Q+   ++A +  ++MLE+G
Sbjct: 312 IINFYCKVGLVEAAEAVFEQM----VERDAVTWNLMIAGYLQDGQTDKAFITCRKMLESG 367

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           ++    T+   + AC   +S+  GR  HGY +R++L     +   L+++Y        A+
Sbjct: 368 LRFDCVTLASIIMACMTSSSMEMGRVAHGYAVRNNLESDKAVACGLIELYMSSEKTEHAR 427

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
            +FD+   +++ +   MIS YA  G++ +AL +   +Q +GI P +  + ++++A     
Sbjct: 428 GLFDVMSGRDMVMCKVMISAYADRGMSCQALEVLYQMQHEGISPTAACWDSVISAFMKNE 487

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
            ++E LE+F  M    + +P++  +  +++ LSR G   E + +   M
Sbjct: 488 QIDEALEIFSEMLLT-KTRPNLRTWSLLISGLSRNGMHCEVMNLCCKM 534


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/733 (34%), Positives = 398/733 (54%), Gaps = 27/733 (3%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           ++ +++  +M     +  P     +L GC   +D+ +G++IH  ++++G     + +V +
Sbjct: 123 QQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHG--MVEDVFVSS 180

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
             V FYAKC  +  A  +F  +  ++V +W ++       G  +K L  F EM  DGV P
Sbjct: 181 AFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKP 240

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D   +  +L AC  L  +  G+A+HG+ LK G    VFV+++L+++Y  C  + EA+ VF
Sbjct: 241 DPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVF 300

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D M  RNV+ WNS+   YV  G  ++ + VF EM L GV+P  ++++SIL A + L  L 
Sbjct: 301 DLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLK 360

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            GK  H  AV +GM  D  + ++++N Y+    + +A+ VF  M  R++VTWN L + YV
Sbjct: 361 SGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYV 420

Query: 361 QSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSII----LRDVV 399
             G                 + D+V   SI+   +  + + + K +    +    + DV 
Sbjct: 421 NCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVF 480

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           + N LL+ YA      EA  +F  +    ++    SWN ++  +  N +  +   MF QM
Sbjct: 481 VCNALLSLYAKCVCVREAQVVFDLIPHREVA----SWNGILTAYFTNKEYEKGLYMFSQM 536

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
               V+ + ITW+ +I G  +NS   EA+  F++M   G KP  TTI   L AC+    L
Sbjct: 537 NRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECL 596

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
           R G+ IH Y+ RH          +LVDMYAKCG +  ++ VFD+ P K++  +N MI   
Sbjct: 597 RMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFAN 656

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
            MHG   EAL+LF+ +    + PDS TFT +L+ACSH+ LV EG+++F  M  DH V+P 
Sbjct: 657 GMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPE 716

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
            EH+ CVV++ SR G L+EA   I  MP +P A    + L+ C      ELA+  ++ L 
Sbjct: 717 AEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLF 776

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           +++P+   NYV L N    +  W+E S++R +MKE+G+ K PGCSW  +G  +H FVA D
Sbjct: 777 EIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGD 836

Query: 760 RSHPKTEEIYATL 772
           +S+ ++++IY  L
Sbjct: 837 KSNMESDKIYNFL 849



 Score =  238 bits (607), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 166/625 (26%), Positives = 280/625 (44%), Gaps = 119/625 (19%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           GL  +A+  +   +  G+ PD  V   V KAC A       +  H    + G    V + 
Sbjct: 19  GLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIG 78

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++ I  YGKC  +E AR+VFD ++AR+VV WNS+   YV  G  ++ + VF +M L  V+
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
              ++V+SIL   ++L  L  GK+ H   V +GM  D  + S+ +NFY+K   + +A+ V
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTV 198

Query: 341 FSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASSI---------- 373
           F  M  RD+VTWN L + YV  G                 + D V  S I          
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDL 258

Query: 374 -------------------------VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                                    V++Y  C  +  A+ VF+ +  R+V+ WN+L + Y
Sbjct: 259 KSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCY 318

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQM--------NEAKDM 455
            + G   +   +F +M L G+ P+ ++ +S++     L  L++G+            +D+
Sbjct: 319 VNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDV 378

Query: 456 F-------LQMQSLGVQP-----------NLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           F       L    L V+            N++TW +L S         + +  F+EM+  
Sbjct: 379 FVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLN 438

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           G+KP   T+   L AC+D+  L++G+ IHG+ +RH +     +  +L+ +YAKC  + +A
Sbjct: 439 GVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREA 498

Query: 558 KRVFDISPSKELPVYNAMISGYAMH-----GLAV-------------------------- 586
           + VFD+ P +E+  +N +++ Y  +     GL +                          
Sbjct: 499 QVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKN 558

Query: 587 ----EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
               EA+ +F+ +Q  G  PD  T  +IL ACS +  +  G E+   +F  H     +  
Sbjct: 559 SRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFR-HWKDWDLAR 617

Query: 643 FGCVVNLLSRCGNLDEALRVILTMP 667
              +V++ ++CG L  +  V   MP
Sbjct: 618 TNALVDMYAKCGGLSLSRNVFDMMP 642



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 155/627 (24%), Positives = 277/627 (44%), Gaps = 120/627 (19%)

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA-SANLDALDEGKQAHAVAVINGMELD 317
           + +GL  EAI+++      G++P +    ++  A +A+ DAL + KQ H  A   G+  D
Sbjct: 16  IPHGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDAL-KVKQFHDDATRCGVMSD 74

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------- 363
             +G++ I+ Y K   +E A  VF  +V RD+VTWN L A YV  G              
Sbjct: 75  VSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGL 134

Query: 364 ---QSDVVVASSI-----------------------------------VDMYAKCERIDN 385
              +++ +  SSI                                   V+ YAKC  +  
Sbjct: 135 NKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVRE 194

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV------ 439
           A+ VF+ +  RDVV WN+L + Y + G   +   +F +M L+G+ P+ ++ + +      
Sbjct: 195 AQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSD 254

Query: 440 ---------ILGF-LRNGQ-------------------MNEAKDMFLQMQSLGVQPNLIT 470
                    I GF L++G                    + EA+ +F     L    N+IT
Sbjct: 255 LQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVF----DLMPHRNVIT 310

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W +L S         + +  F+EM   G+KP    ++  L AC+ +  L++G+ IHG+ +
Sbjct: 311 WNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAV 370

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           +H +     + T+LV++YA C  + +A+ VFD+ P + +  +N++ S Y   G   + L 
Sbjct: 371 KHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLN 430

Query: 591 LFKNLQQKGIDPDSITFTNILNACS-----HAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
           +F+ +   G+ PD +T  +IL+ACS      +G V  G  +  GM  D  V  ++     
Sbjct: 431 VFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNAL----- 485

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE-PD 704
            ++L ++C  + EA  V   +P    A   G +L+    + E E   Y+   + + E   
Sbjct: 486 -LSLYAKCVCVREAQVVFDLIPHREVASWNG-ILTAYFTNKEYEKGLYMFSQMNRDEVKA 543

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP--------GCSW---IQIGEELH 753
           +   +  +      + R  E  ++   M+  G + +          CS    +++G+E+H
Sbjct: 544 DEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIH 603

Query: 754 VFVACDRSHPKTEEIYATLALLGMHVR 780
            +V     H K  ++  T AL+ M+ +
Sbjct: 604 CYVF---RHWKDWDLARTNALVDMYAK 627


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 266/819 (32%), Positives = 428/819 (52%), Gaps = 90/819 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGP-EIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           +  L K+  +REA+  L     R     P + YG +L     +R +  G+Q+HA  +  G
Sbjct: 26  LRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATG 85

Query: 110 DFFARNE-YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
                +  ++ TKL+  Y KC  L  A RLF  +  + VFSW A+IG     G + +A+ 
Sbjct: 86  ALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVG 145

Query: 169 GFVEMQED----GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
            +  M+      G +PD   L +VLKACGA G    G  VHG  +K G D    VA++L+
Sbjct: 146 VYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALV 205

Query: 225 DMYGKCGDLEEARKVFDGMI-ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
            MY KCG L+ A +VF+ M   R+V +WNS I G VQNG+  EA+ +F  M  +G     
Sbjct: 206 GMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNS 265

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            +   +L   A L  L+ G++ HA  +  G E  N+  ++++  Y++ G ++ A  VF  
Sbjct: 266 YTTVGVLQVCAELAQLNHGRELHAALLKCGTEF-NIQCNALLVMYARCGWVDSALRVFRE 324

Query: 344 MVERDIVTWNLLIASYV----------------QSG------------------------ 363
           + ++D ++WN +++ YV                Q+G                        
Sbjct: 325 IGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLING 384

Query: 364 ------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
                        SD+ +A++++DMY KC  ++ + +VF+ + ++D V W T++A YA  
Sbjct: 385 REVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQS 444

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVILG----------------FLRNGQM-----N 450
            R  EA   F   Q EGI  + +   S++                   +RNG +     N
Sbjct: 445 SRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKN 504

Query: 451 EAKDMF---------LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
              D++         L +  +  + +++TWT++++   +N   +EA+  F +ML  GI+P
Sbjct: 505 RIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQP 564

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
            +  +   L A   ++SL  G+ IHG+LIR    +   +V+SLVDMY+ CG+++ A +VF
Sbjct: 565 DSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVF 624

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           D +  K++ ++ AMI+   MHG   +A+ +FK + + G+ PD ++F  +L ACSH+ LV+
Sbjct: 625 DEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVD 684

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           EG      M S ++++P  EH+ CVV+LL R G  +EA + I +MP +P + +  +LL  
Sbjct: 685 EGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGA 744

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C      ELA   ++ LL+LEPDNPGNYV +SN +A  G+WN V ++R  M E+GLRK+P
Sbjct: 745 CRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDP 804

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            CSWI+IG  +H F A D SH  ++ I+  LA +   +R
Sbjct: 805 ACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLR 843



 Score =  187 bits (474), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 144/523 (27%), Positives = 246/523 (47%), Gaps = 64/523 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS   +     EA+DL   M+   F +       +LQ C     +  G+++HA +
Sbjct: 232 SWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAAL 291

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LK G  F         L+V YA+C  +D A R+F  +  K+  SW +++    +  L  +
Sbjct: 292 LKCGTEF---NIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAE 348

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  F EM ++G +PD+  + ++L A G LG +  GR VH Y +K   D  + +A++L+D
Sbjct: 349 AIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMD 408

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY KC  +E + +VFD M  ++ V+W ++I  Y Q+    EAI  F     EG++   + 
Sbjct: 409 MYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMM 468

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           + SIL A + L ++   KQ H+ A+ NG+ LD +L + II+ Y + G +  A  +F  + 
Sbjct: 469 MGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLD 527

Query: 346 ERDIVTWNLLIASYVQSG-----------------QSDVV-------------------- 368
           ++DIVTW  ++  + ++G                 Q D V                    
Sbjct: 528 KKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKE 587

Query: 369 ---------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                          V SS+VDMY+ C  ++ A +VF+    +DVVLW  ++ A    G 
Sbjct: 588 IHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGH 647

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK---DMFLQMQSLGVQPNLIT 470
             +A  +F +M   G+SP+ +S+ +++     +  ++E K   DM +    L  QP    
Sbjct: 648 GKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKL--QPWQEH 705

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           +  ++  L ++    EA  F + M    ++P +      L AC
Sbjct: 706 YACVVDLLGRSGQTEEAYKFIKSM---PLEPKSVVWCALLGAC 745



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 206/440 (46%), Gaps = 27/440 (6%)

Query: 44  YKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHA 103
           Y S+   +S   + +   EA+D   EM    F         LL    +   +  G+++HA
Sbjct: 330 YISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHA 389

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
             +K       +  +   L+  Y KC +++ ++R+F R+R+K+  SW  II    +    
Sbjct: 390 YAVKQ--RLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRY 447

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
            +A+  F   Q++G+  D  ++ ++L+AC  L  +   + VH Y ++ G    + + + +
Sbjct: 448 SEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLD-LILKNRI 506

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           ID+YG+CG++  A  +F+ +  +++V W SM+  + +NGL  EA+ +F +M   G++P  
Sbjct: 507 IDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDS 566

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           V++  IL A A L +L +GK+ H   +     ++  + SS+++ YS  G +  A  VF  
Sbjct: 567 VALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDE 626

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVV---------------ASSIVDMYA--KCERIDNA 386
              +D+V W  +I +    G     +                S +  +YA    + +D  
Sbjct: 627 AKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEG 686

Query: 387 KQVFNSIILR-DVVLWNTLLAAYAD-LGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
           K   + ++ +  +  W    A   D LGRSG+    +  ++   + P  + W   +LG  
Sbjct: 687 KFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVW-CALLGAC 745

Query: 445 RNGQMNE----AKDMFLQMQ 460
           R  + +E    A D  L+++
Sbjct: 746 RIHKNHELAMIATDKLLELE 765


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 261/777 (33%), Positives = 413/777 (53%), Gaps = 96/777 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL  CV  + +  GQQ+HAR+LK+      + ++ TKL+  Y KC +L  A ++F  +  
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKS----HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTE 107

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           + +F+W A++G     G   +A+  + EM+  GV+ D    P+VLKACGALG    G  +
Sbjct: 108 RTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEI 167

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI--ARNVVAWNSMIVGYVQNG 262
           HG  +K GF   VFV ++LI MYGKCGDL  AR +FDG++    + V+WNS+I  +V  G
Sbjct: 168 HGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEG 227

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
              EA+ +F  M   GV     +  + L    +   +  G   H  A+ +    D  + +
Sbjct: 228 KCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVAN 287

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ--------------------- 361
           ++I  Y+K G +EDAE VF+ M+ RD V+WN L++  VQ                     
Sbjct: 288 ALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKP 347

Query: 362 -----------SGQS--------------------DVVVASSIVDMYAKCERIDNAKQVF 390
                      SG+S                    ++ + ++++DMYAKC  + +    F
Sbjct: 348 DQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAF 407

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG-------- 442
             +  +D++ W T++A YA      EA  LF ++Q++G+  + +   SV+          
Sbjct: 408 ECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRN 467

Query: 443 FLRN--------------------------GQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           F+R                           G  + A+  F  ++S     ++++WT++I+
Sbjct: 468 FIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRS----KDIVSWTSMIT 523

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
               N    EA+  F  + +T I+P +  I  ALSA  +++SL+ G+ IHG+LIR    L
Sbjct: 524 CCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFL 583

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
             PI +SLVDMYA CG +  ++++F     ++L ++ +MI+   MHG   EA+ALFK + 
Sbjct: 584 EGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMT 643

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
            + + PD ITF  +L ACSH+GL+ EG   F  M   +Q++P  EH+ C+V+LLSR  +L
Sbjct: 644 DENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSL 703

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           +EA + + +MP  P + +  +LL  C   +  EL E  ++ LLQ +  N G Y  +SN +
Sbjct: 704 EEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIF 763

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           AA GRWN+V +VR  MK  GL+KNPGCSWI++  ++H F+A D+SHP+T++IY  LA
Sbjct: 764 AADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLA 820


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/789 (32%), Positives = 412/789 (52%), Gaps = 100/789 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNG---DFFARNEYVETKLVVFYAKCDALDVASRL 138
           Y  LLQ C  KR +   ++IHA++++ G   D F  N      L+  Y KC ++  A ++
Sbjct: 30  YVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSN-----LLINMYVKCRSVLDAHQV 84

Query: 139 FCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
           F  +  ++V SW ++I    + G  +KA   F EMQ  G  P+     ++L AC +   +
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
             G+ +H  ++K G+     V +SL+ MYGKCGDL  AR+VF G+  R+VV++N+M+  Y
Sbjct: 145 ENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLY 204

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            Q    +E + +F +M+ EG+ P +V+  ++L A      LDEGK+ H + V  G+  D 
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDI 264

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------- 364
            +G++++    + G ++ A+  F  + +RD+V +N LIA+  Q G               
Sbjct: 265 RVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSD 324

Query: 365 --------------------------------------SDVVVASSIVDMYAKCERIDNA 386
                                                 SDV + ++++ MYA+C  +  A
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKA 384

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW---------- 436
           +++F ++  RD++ WN ++A YA     GEA RL+ QMQ EG+ P  +++          
Sbjct: 385 RELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444

Query: 437 -------------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
                                    N+++  + R G + EA+++F   Q+  V    I+W
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDV----ISW 500

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
            ++I+G  Q+     A   FQEM    ++P   T    LS C +  +L  G+ IHG +  
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
             L L   +  +L++MY +CG++  A+ VF     +++  + AMI G A  G  ++A+ L
Sbjct: 561 SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIEL 620

Query: 592 FKNLQQKGI-DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           F  +Q +G   PD  TFT+IL+AC+HAGLV EG ++F  M S++ V P++EH+GC+V LL
Sbjct: 621 FWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLL 680

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
            R     EA  +I  MP  PDA +  +LL  C       LAE+ + + L+L   NP  Y+
Sbjct: 681 GRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYI 740

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            LSN YAA+GRW++V+++R +M+ +G+RK PG SWI++   +H F+A DRSHP+T EIYA
Sbjct: 741 LLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYA 800

Query: 771 TLALLGMHV 779
            L  L + +
Sbjct: 801 ELKRLSVEM 809



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/512 (25%), Positives = 218/512 (42%), Gaps = 87/512 (16%)

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
            E  R +  ++L        L E K+ HA  V  G+  D  L + +IN Y K   + DA 
Sbjct: 23  TETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 339 VVFSRMVERDIVTWNLLIASYVQSG----------------------------------- 363
            VF  M  RD+++WN LI+ Y Q G                                   
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 364 -----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                            Q D  V +S++ MY KC  +  A+QVF  I  RDVV +NT+L 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
            YA      E   LF QM  EGISP+ +++ +++  F     ++E K +       G+  
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNS 262

Query: 467 NL-------------------------------ITWTTLISGLTQNSCGNEAILFFQEML 495
           ++                               + +  LI+ L Q+    EA   +  M 
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
             G+  + TT    L+AC+   +L  G+ IH ++          I  +L+ MYA+CG++ 
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           +A+ +F   P ++L  +NA+I+GYA      EA+ L+K +Q +G+ P  +TF ++L+AC+
Sbjct: 383 KARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA 442

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           ++    +G  +   +     +K +      ++N+  RCG+L EA  V        D    
Sbjct: 443 NSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISW 500

Query: 676 GSLLSTCVKSNETELAEYISEHLL--QLEPDN 705
            S+++   +    E A  + + +   +LEPDN
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 33  LRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQG 88
           L E+ N +E        S+   I+  ++      A  L  EM+    +     +  +L G
Sbjct: 482 LMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSG 541

Query: 89  CVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVF 148
           C     +  G+QIH RI ++G     N  +   L+  Y +C +L  A  +F  L+ ++V 
Sbjct: 542 CKNPEALELGKQIHGRITESGLQLDVN--LGNALINMYIRCGSLQDARNVFHSLQHRDVM 599

Query: 149 SWAAIIGLNCRVGLSEKALIGFVEMQEDGVS-PDNFVLPNVLKACGALGWVGFGRAV--- 204
           SW A+IG     G   KA+  F +MQ +G   PD     ++L AC   G V  G  +   
Sbjct: 600 SWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSS 659

Query: 205 ----HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
               +G +  +   GC      L+ + G+    +EA  + + M    +   W +++
Sbjct: 660 MESEYGVLPTIEHYGC------LVGLLGRARRFQEAETLINQMPFPPDAAVWETLL 709


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/823 (30%), Positives = 421/823 (51%), Gaps = 97/823 (11%)

Query: 46   SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
            SY   +   +++  + E + L  +M           Y  LL        +  G++IH   
Sbjct: 251  SYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLA 310

Query: 106  LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            +  G     +  V T L   + +C  +  A +       ++V  + A+I    + G  E+
Sbjct: 311  VNEG--LNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEE 368

Query: 166  ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
            A   + +M+ DGV  +     +VL AC     +G G  +H ++ +VG    V + +SLI 
Sbjct: 369  AFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLIS 428

Query: 226  MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
            MY +CGDL  AR++F+ M  R++++WN++I GY +     EA++++ +M  EGV+P RV+
Sbjct: 429  MYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVT 488

Query: 286  VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
               +LSA  N  A  +GK  H   + +G++ +  L ++++N Y + G + +A+ VF    
Sbjct: 489  FLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR 548

Query: 346  ERDIVTWNLLIASYVQSG------------------------------------------ 363
             RDI++WN +IA + Q G                                          
Sbjct: 549  ARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQ 608

Query: 364  ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                      Q DV + +++++MY +C  + +A +VF+S+  R+V+ W  ++  +AD G 
Sbjct: 609  IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGE 668

Query: 414  SGEASRLFYQMQLEGISP----------------------NIISW-------------NS 438
              +A  LF+QMQ +G  P                       +I+              N+
Sbjct: 669  DRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNA 728

Query: 439  VILGFLRNGQMNEAKDMFLQMQSLGVQPN--LITWTTLISGLTQNSCGNEAILFFQEMLE 496
            +I  + ++G M +A+ +F +M      PN  +++W  +I+G  QN  G  A+ F  +M E
Sbjct: 729  LISAYSKSGSMTDARKVFDKM------PNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQE 782

Query: 497  TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
             G+  +  +    L+AC+  ++L  G+ +H  +++  +     +  +L+ MYAKCG++ +
Sbjct: 783  QGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEE 842

Query: 557  AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
            A+ VFD    K +  +NAMI+ YA HGLA +AL  F  + ++GI PD  TFT+IL+AC+H
Sbjct: 843  AQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNH 902

Query: 617  AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            +GLV EG  +F  + S H + P++EH+GC+V LL R G   EA  +I  MP  PDA +  
Sbjct: 903  SGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWE 962

Query: 677  SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
            +LL  C       LAE+ + + L+L   NP  YV LSN YAA+GRW++V+++R +M+ +G
Sbjct: 963  TLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRG 1022

Query: 737  LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
            +RK PG SWI++   +H F+A DRSHP+T EIY  L  L + +
Sbjct: 1023 IRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEM 1065



 Score =  302 bits (773), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 190/705 (26%), Positives = 339/705 (48%), Gaps = 104/705 (14%)

Query: 56  KEKQIR--EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG---D 110
           +++Q R  E  DL    + R  +     Y +L+Q C  KR +   ++IHA++++ G   D
Sbjct: 57  RDEQHRGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPD 116

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  N      L+  Y KC ++  A ++F ++  ++V SW ++I    + G  +KA   F
Sbjct: 117 IFLSN-----LLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLF 171

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EMQ  G  P      ++L AC +   + +G+ +H  +++ G+     V +SL++MYGKC
Sbjct: 172 EEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKC 231

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
            DL  AR+VF G+  R+VV++N+M+  Y Q    EE I +F +M+ EG+ P +V+  ++L
Sbjct: 232 EDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLL 291

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A      LDEGK+ H +AV  G+  D  +G+++   + + G +  A+       +RD+V
Sbjct: 292 DAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVV 351

Query: 351 TWNLLIASYVQSGQ---------------------------------------------- 364
            +N LIA+  Q G                                               
Sbjct: 352 VYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHI 411

Query: 365 ------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                 SDV + +S++ MYA+C  +  A+++FN++  RD++ WN ++A YA     GEA 
Sbjct: 412 SEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAM 471

Query: 419 RLFYQMQLEGISPNIISW-----------------------------------NSVILGF 443
           +L+ QMQ EG+ P  +++                                   N+++  +
Sbjct: 472 KLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMY 531

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            R G + EA+++F   ++     ++I+W ++I+G  Q+     A   F EM + G++P  
Sbjct: 532 RRCGSIMEAQNVFEGTRA----RDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDK 587

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            T    L  C +  +L  GR IH  +I   L L   +  +L++MY +CG++  A  VF  
Sbjct: 588 ITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHS 647

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
              + +  + AMI G+A  G   +A  LF  +Q  G  P   TF++IL AC  +  ++EG
Sbjct: 648 LRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEG 707

Query: 624 LELFVGMF-SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
            ++   +  S +++   + +   +++  S+ G++ +A +V   MP
Sbjct: 708 KKVIAHILNSGYELDTGVGN--ALISAYSKSGSMTDARKVFDKMP 750



 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 176/700 (25%), Positives = 337/700 (48%), Gaps = 94/700 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  +++   ++A  L  EM+   F      Y  +L  C    ++  G++IH++I++ G 
Sbjct: 155 ISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAG- 213

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            + R+  V+  L+  Y KC+ L  A ++F  +  ++V S+  ++GL  +    E+ +  F
Sbjct: 214 -YQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLF 272

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M  +G+ PD     N+L A      +  G+ +H   +  G +  + V ++L  M+ +C
Sbjct: 273 GQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRC 332

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           GD+  A++  +    R+VV +N++I    Q+G  EEA   +Y+M  +GV   R +  S+L
Sbjct: 333 GDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVL 392

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           +A +   AL  G+  H+     G   D  +G+S+I+ Y++ G L  A  +F+ M +RD++
Sbjct: 393 NACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLI 452

Query: 351 TWNLLIASY--------------------------------------------------- 359
           +WN +IA Y                                                   
Sbjct: 453 SWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDI 512

Query: 360 VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
           ++SG +S+  +A+++++MY +C  I  A+ VF     RD++ WN+++A +A  G    A 
Sbjct: 513 LRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAY 572

Query: 419 RLFYQMQLEGISPNIISWNSVILG-----------------------------------F 443
           +LF +M+ EG+ P+ I++ SV++G                                   +
Sbjct: 573 KLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMY 632

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
           +R G + +A ++F  ++      N+++WT +I G        +A   F +M   G KP  
Sbjct: 633 IRCGSLQDAYEVFHSLR----HRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVK 688

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
           +T +  L AC   A L  G+ +  +++     L T +  +L+  Y+K G++  A++VFD 
Sbjct: 689 STFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDK 748

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
            P++++  +N MI+GYA +GL   AL     +Q++G+  +  +F +ILNACS    + EG
Sbjct: 749 MPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEG 808

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
             +   +    +++  +     ++++ ++CG+L+EA  V 
Sbjct: 809 KRVHAEIVK-RKMQGDVRVGAALISMYAKCGSLEEAQEVF 847


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 268/865 (30%), Positives = 438/865 (50%), Gaps = 123/865 (14%)

Query: 9   PPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLT 68
           PP+P  +H  P  P  L+     KL+++            HQ  ++S++K  R    LL 
Sbjct: 12  PPSP-LNHV-PNIPHNLTALSFQKLKQA------------HQPVNISQQKN-RSNFSLLD 56

Query: 69  EMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK 128
                N  +    Y  +L  C   +    G+Q+HA  +K G  F  + +++TKL+  YA+
Sbjct: 57  -----NKPLNTSKYASVLDSCKCPK---LGKQVHAHTIKTG--FDADGFIDTKLLQMYAR 106

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188
           C  L  A  LF  + ++N+ SW AI+ +    GL E+A + F  +Q DGV  D FV P V
Sbjct: 107 CGLLKDADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLV 166

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
            KAC  LG V  GR +HG V+K  F   ++V+++LIDMYGKCG L++A+KV   M  R+ 
Sbjct: 167 FKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDS 226

Query: 249 VAWNSMIV------------------------------------GYVQNGLNEEAIRVFY 272
           V WNS+I                                     G+ QNG +EEAI + +
Sbjct: 227 VTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLF 286

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
            M +EG+ P   ++  +L A A L  LD GKQ H     +    + V+ +++++ Y + G
Sbjct: 287 RMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCG 346

Query: 333 LLEDAEVVFSRM-----------------------------------VERDIVTWNLLIA 357
            +  A  +F +                                    +ER +++WN +I+
Sbjct: 347 DMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIIS 406

Query: 358 SYVQSG------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILR--- 396
            YV++                   + D     S++   A    +   K++    I++   
Sbjct: 407 GYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQ 466

Query: 397 -DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
            D  +   L+  Y+       A   F ++    +  ++ +WN++I G+ R+ Q+   + +
Sbjct: 467 SDTFVGGALVEMYSKCQDLTAAQVAFDEV----MEKDVPTWNALISGYTRSNQIERIQYL 522

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
             +M+  G  PN+ TW ++++GL +N   +  +  F EM  + ++P   T+   L AC+ 
Sbjct: 523 LEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSR 582

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +A+L  G+  H + I+        I  +LVDMYAKCG++  A+  +D   +  L  +NAM
Sbjct: 583 LATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLVSHNAM 642

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           ++  AMHG   E ++LF+ +   G  PD +TF ++L++C H G V  G E F  +   + 
Sbjct: 643 LTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFF-DLMGYYN 701

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           VKP+++H+  +V+LLSR G L EA  +I  MP + D+ + G+LL  CV     EL E  +
Sbjct: 702 VKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGNIELGEIAA 761

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           E L++LEP+N GNYV L+N +A + RW ++++VR +MK++G+ K+PGCSWI+   E+H F
Sbjct: 762 ERLIELEPNNSGNYVLLANLHAYARRWTDLARVRGMMKDRGMHKSPGCSWIEDKNEIHSF 821

Query: 756 VACDRSHPKTEEIYATLALLGMHVR 780
           +ACDRSH + EEIYATL  L +H++
Sbjct: 822 LACDRSHKRAEEIYATLDYLALHMK 846


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 267/832 (32%), Positives = 436/832 (52%), Gaps = 93/832 (11%)

Query: 26  SQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGEL 85
           + T    LR+  N+ + +  + F    S+ +   +  A  LL+ M   N     EIY  +
Sbjct: 38  TNTKTQNLRKLTNARQRI--TGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASI 95

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           LQ C    ++  G Q+HA+++ NG      E++ ++L+  Y +   ++ A R+F ++  +
Sbjct: 96  LQKCRKLYNLRLGFQVHAQLVVNGVDVC--EFLGSRLLEVYCQTGCVEDARRMFDKMSER 153

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           NVFSW AI+ + C +G  E+ +  F  M  +GV PD+FV P V KAC  L     G+ V+
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 213

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
            Y+L +GF+G   V  S++DM+ KCG ++ AR+ F+ +  ++V  WN M+ GY   G  +
Sbjct: 214 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 273

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVLGSSI 324
           +A++   +M L GV+P +V+  +I+S  A     +E  K    +  +   + + V  +++
Sbjct: 274 KALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTAL 333

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------------- 363
           I    + G   +A  VF +MV   +   ++ IAS V +                      
Sbjct: 334 IAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEE 393

Query: 364 -QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL-- 420
             SD++V +S+VD YAKC  ++ A++ F  I   D+V WN +LA YA  G   EA  L  
Sbjct: 394 LDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLS 453

Query: 421 ---------------------------------FYQMQLEGISPNI--ISWNSVILGFLR 445
                                            F +M   G+ PN   IS      G +R
Sbjct: 454 EMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVR 513

Query: 446 NGQMNEAKDMFLQMQ----SLGVQPNLIT-------------------------WTTLIS 476
           N ++ +    ++       S GV   LI+                         W ++IS
Sbjct: 514 NLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIIS 573

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
              Q+     A+   +EM  + ++ +T T+  AL AC+ +A+LR G+ IH ++IR  L  
Sbjct: 574 ACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDT 633

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              I+ SL+DMY +CG+I +++R+FD+ P ++L  +N MIS Y MHG  ++A+ LF+  +
Sbjct: 634 CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFR 693

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
             G+ P+ ITFTN+L+ACSH+GL+ EG + F  M +++ + P++E + C+V+LLSR G  
Sbjct: 694 TMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQF 753

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           +E L  I  MP +P+A + GSLL  C      +LAEY + +L +LEP + GNYV ++N Y
Sbjct: 754 NETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIY 813

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           +A+GRW + +++R +MKE+G+ K PGCSWI++  +LH FV  D SHP  E+I
Sbjct: 814 SAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQI 865


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 258/778 (33%), Positives = 416/778 (53%), Gaps = 91/778 (11%)

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV-ETKLVVFYAKCDALDVASRLFCR 141
           G LLQ C  ++D+  G+++H  +  +  F   N++V  T+++  Y+ C +   +  +F +
Sbjct: 2   GVLLQACGQRKDIEVGRRLHEMVSASTQFC--NDFVLNTRIITMYSMCGSPSDSRMVFDK 59

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALGWVGF 200
           LR KN+F W AI+    R  L E A+  F E+       PDNF LP V+KAC  L  +G 
Sbjct: 60  LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGL 119

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ +HG   K+     VFV ++LI MYGKCG +EEA KVF+ M  RN+V+WNS+I G+ +
Sbjct: 120 GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSE 179

Query: 261 NGLNEEAIRVFYEMTL--EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           NG  +E+   F EM +  E   P   ++ ++L   A  + +++G   H +AV  G+  + 
Sbjct: 180 NGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEEL 239

Query: 319 VLGSSIINFYSK-------------------------VG-------------LLEDAEVV 340
           ++ +S+I+ YSK                         +G             LL+  +  
Sbjct: 240 MVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTE 299

Query: 341 FSRMVERDIVTWNLLIA----------------SYVQSGQSDVVVASSIVDMYAKCERID 384
            ++M   +    N+L                  S+    QS+ +VA++ +  Y +C  + 
Sbjct: 300 DAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALC 359

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
           ++++VF+ +  + V  WN LL  YA      +A  L+ QM   G+ P+  +  S++L   
Sbjct: 360 SSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 419

Query: 445 RNGQMNEAKDM--FLQMQSLGVQP-----------------------------NLITWTT 473
           R   ++  +++  F     L V P                             +L++W  
Sbjct: 420 RMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNV 479

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +I+G +QN   +EAI  F++ML  GI+P    I C   AC+ +++LR G+ +H + ++  
Sbjct: 480 MIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH 539

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
           L     + +S++DMYAK G I  ++R+FD    K++  +N +I+GY +HG   EAL LF+
Sbjct: 540 LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFE 599

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            + + G+ PD  TFT IL ACSHAGLV +GLE F  M + H ++P +EH+ CVV++L R 
Sbjct: 600 KMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRA 659

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G +D+ALR+I  MP DPD+ I  SLLS+C       L E ++  LL+LEP+ P NYV +S
Sbjct: 660 GRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLIS 719

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
           N +A SG+W++V +VR  MK+ GL+K+ GCSWI++G ++H F+  D   P+ EE+  T
Sbjct: 720 NLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRET 777



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/518 (25%), Positives = 243/518 (46%), Gaps = 58/518 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGEL--LQGCVYKRDMYTGQQIHA 103
           S+   I   ++E+ +     LL +M+  + ++  + +  L  L  C+ + ++ + +++H 
Sbjct: 272 SWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHG 331

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
              ++G     NE V    +  Y +C AL  + R+F  +  K V SW A++    +    
Sbjct: 332 YSWRHG--LQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDP 389

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
            KAL  +++M + G+ PD F + ++L AC  +  + +G  +HG+ L+ G     F+  SL
Sbjct: 390 RKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISL 449

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           + +Y  CG    A+ +FDGM  R++V+WN MI GY QNGL +EAI +F +M  +G++P  
Sbjct: 450 LSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYE 509

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           +++  +  A + L AL  GK+ H  A+   +  D  + SSII+ Y+K G +  ++ +F R
Sbjct: 510 IAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDR 569

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           + E+D+ +WN++IA Y   G                                        
Sbjct: 570 LREKDVASWNVIIAGYGIHG---------------------------------------- 589

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL- 462
                    R  EA  LF +M   G+ P+  ++  +++     G + +  + F QM +L 
Sbjct: 590 ---------RGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLH 640

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
            ++P L  +T ++  L +    ++A+   +EM      P +   +  LS+C    +L  G
Sbjct: 641 NIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPG---DPDSRIWSSLLSSCRIHGNLGLG 697

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
             +   L+  +   P   V  + +++A  G     +RV
Sbjct: 698 EKVANKLLELEPEKPENYVL-ISNLFAGSGKWDDVRRV 734


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/717 (32%), Positives = 396/717 (55%), Gaps = 26/717 (3%)

Query: 64  VDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV 123
           +++  E+  +      E+Y   L+ C    D++ G +IH  ++K G  F  + Y+   L+
Sbjct: 118 LEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRG--FDLDVYLRCALM 175

Query: 124 VFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
            FY +C  L+ A+++F  +       W   I LN +    +K +  F +MQ   +  +  
Sbjct: 176 NFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETA 235

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
            +  VL+ACG +G +   + +HGYV + G D  V + + LI MY K G LE AR+VFD M
Sbjct: 236 TIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 295

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
             RN  +WNSMI  Y   G   +A  +FYE+    ++P  V+   +LS          G 
Sbjct: 296 ENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGH-----FLHGY 350

Query: 304 QAHAVAVIN-----GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           +   + ++      G + ++   +S++   S++G L   +     ++             
Sbjct: 351 KEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGF--------- 401

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                  DV V +S++DMY K   + +A+ VF+++  R++  WN+L++ Y+  G   +A 
Sbjct: 402 -----DCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDAL 456

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
           RL  QM+ EGI P++++WN +I G+   G   EA  +  Q +SLG+ PN+++WT LISG 
Sbjct: 457 RLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGS 516

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
           +Q     +++ FF +M + G+ P++ +ITC L AC  ++ L+ G+ IH   IR+      
Sbjct: 517 SQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDV 576

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            + T+L+DMY+K  ++  A +VF    +K L  +N MI G+A+ GL  EA+++F  +Q+ 
Sbjct: 577 FVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKV 636

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           G+ PD+ITFT +L+AC ++GL+ EG + F  M +D+++ P +EH+ C+V+LL R G LDE
Sbjct: 637 GVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDE 696

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           A  +I TMP  PDA I G+LL +C      + AE  +++L +LEP+N  NY+ + N Y+ 
Sbjct: 697 AWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSI 756

Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
             RW ++  +R++M   G+R     SWIQI + +HVF + ++ HP   +IY  L  L
Sbjct: 757 FNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQL 813



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 238/493 (48%), Gaps = 40/493 (8%)

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN-GLNEEAIRVFYEMTLEG 278
           A +LI  Y   GD   A  VF   + RN + WNS +  +  + G     + VF E+  +G
Sbjct: 69  AKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKG 128

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V       +  L     +  +  G + H   +  G +LD  L  +++NFY +   LE A 
Sbjct: 129 VVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKAN 188

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVV--------------ASSIVDMYAKCER-- 382
            VF  M   + + WN  I   +QS +    V               ++IV +   C +  
Sbjct: 189 QVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMG 248

Query: 383 -IDNAKQ----VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
            ++ AKQ    VF   +  DV L N L++ Y+  G+   A R+F  M+    + N  SWN
Sbjct: 249 ALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSME----NRNTSSWN 304

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           S+I  +   G +N+A  +F +++S  ++P+++TW  L+SG   +    E +   Q M   
Sbjct: 305 SMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE 364

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           G KP+++++T  L A +++  L  G+  HGY++R+       + TSL+DMY K  ++  A
Sbjct: 365 GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSA 424

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           + VFD   ++ +  +N+++SGY+  G+  +AL L   ++++GI PD +T+  +++  +  
Sbjct: 425 QAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMW 484

Query: 618 GLVNEGLELFVGMFSDHQVK-----PSMEHFGCVVNLLSRCGNLDEALRVILTMPCD--- 669
           G   E L +       HQ K     P++  +  +++  S+ GN  ++L+    M  +   
Sbjct: 485 GCGKEALAVL------HQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVM 538

Query: 670 PDAHIIGSLLSTC 682
           P++  I  LL  C
Sbjct: 539 PNSASITCLLRAC 551



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 239/523 (45%), Gaps = 69/523 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I +L  EK +++ V+L  +M+    +        +LQ C     +   +QIH  + + G 
Sbjct: 207 ILNLQSEK-LQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFG- 264

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA------------------ 152
               +  +   L+  Y+K   L++A R+F  +  +N  SW +                  
Sbjct: 265 -LDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLF 323

Query: 153 -----------IIGLNCRV------GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
                      I+  NC +      G  E+ L     MQ +G  P++  + +VL+A   L
Sbjct: 324 YELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISEL 383

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
           G++  G+  HGYVL+ GFD  V+V +SLIDMY K   L  A+ VFD M  RN+ AWNS++
Sbjct: 384 GFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLV 443

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN--- 312
            GY   G+ E+A+R+  +M  EG++P  V+   ++S  A       GK+A AV       
Sbjct: 444 SGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGC---GKEALAVLHQTKSL 500

Query: 313 GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA---------SYVQSG 363
           G+  + V  +++I+  S+ G   D+   F++M +  ++  +  I          S +Q G
Sbjct: 501 GLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKG 560

Query: 364 Q------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
           +             DV VA++++DMY+K   + NA +VF  I  + +  WN ++  +A  
Sbjct: 561 KEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIF 620

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLIT 470
           G   EA  +F +MQ  G+ P+ I++ +++     +G + E    F  M     + P L  
Sbjct: 621 GLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEH 680

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           +  ++  L +    +EA      M    +KP  T     L +C
Sbjct: 681 YCCMVDLLGRAGYLDEAWDLIHTM---PLKPDATIWGALLGSC 720


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/777 (33%), Positives = 409/777 (52%), Gaps = 96/777 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL  CV  + +  GQQ+HA +LK+      + ++ TKLV+ Y KC +L  A ++F  +  
Sbjct: 52  LLDLCVAAKALPQGQQLHALLLKS----HLSAFLATKLVLMYGKCGSLRDAVKVFDEMSE 107

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           + +FSW A++G     G   +A+  + +M+  GV+ D    P+VLKACGALG    G  +
Sbjct: 108 RTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEI 167

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI--ARNVVAWNSMIVGYVQNG 262
           HG  +K G+   VFV ++LI MYGKCGDL  AR +FDG++    + V+WNS+I  +V  G
Sbjct: 168 HGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEG 227

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
              EA+ +F  M   GV     +  + L    +   +  G   H   + +    D  + +
Sbjct: 228 NCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVAN 287

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ----------------SGQ-- 364
           ++I  Y+K G +EDA  VF  M+ RD V+WN L++  VQ                SGQ  
Sbjct: 288 ALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKP 347

Query: 365 ----------------------------------SDVVVASSIVDMYAKCERIDNAKQVF 390
                                             S++ + +++VDMYAKC  +      F
Sbjct: 348 DQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAF 407

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG-------- 442
             +  +D++ W T++A YA      EA  LF ++Q++G+  + +   SV+          
Sbjct: 408 ECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRN 467

Query: 443 FLRN--------------------------GQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           F+R                           G ++ A+  F  ++S     ++++WT++I+
Sbjct: 468 FIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRS----KDIVSWTSMIT 523

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
               N    EA+  F  + +T I+P +  I  ALSA  +++SL+ G+ IHG+LIR    L
Sbjct: 524 CCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFL 583

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
             PI +SLVDMYA CG +  ++++F     ++L ++ +MI+   MHG   +A+ALFK + 
Sbjct: 584 EGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMT 643

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
            + + PD ITF  +L ACSH+GL+ EG   F  M   +Q++P  EH+ C+V+LLSR  +L
Sbjct: 644 DQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSL 703

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           +EA   +  MP  P + I  +LL  C   +  EL E  ++ LLQ + +N G Y  +SN +
Sbjct: 704 EEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIF 763

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           AA GRWN+V +VR  MK  GL+KNPGCSWI++  ++H F+A D+SHP+T++IY  LA
Sbjct: 764 AADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLA 820


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/684 (36%), Positives = 375/684 (54%), Gaps = 55/684 (8%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +Q HA ILK G F   + ++ TKL+  YA       A+ +   +   NVFS++ +I    
Sbjct: 33  RQAHAHILKTGLF--NDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFS 90

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +      AL  F +M   G+ PDN VLP+ +KAC  L  +   R VHG     GFD   F
Sbjct: 91  KFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSF 150

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V SSL+ MY KC  + +A +VFD M   +VV+W++++  Y + G  +EA R+F EM   G
Sbjct: 151 VQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSG 210

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V+P  +S   +++   +     E         + G E D   G++I +    VG LED  
Sbjct: 211 VQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD---GTTISSVLPAVGDLED-- 265

Query: 339 VVFSRMVERDIVTWNLLIASYV--QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
                      +   +LI  YV  Q   SD  V+S+++DMY KC       QVF+ +   
Sbjct: 266 -----------LVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHM 314

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           DV   N  +   +  G+   + RLF Q++ +G+  N++SW S+I    +NG+  EA ++F
Sbjct: 315 DVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELF 374

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            +MQ  GV+PN                                   + TI C L AC ++
Sbjct: 375 REMQIAGVKPN-----------------------------------SVTIPCLLPACGNI 399

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           A+L +G+A H + +R  +     + ++L+DMYAKCG I  ++  FD  P+K L  +NA+I
Sbjct: 400 AALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVI 459

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +GYAMHG A EA+ +F  +Q+ G  PD I+FT +L+ACS +GL  EG   F  M S + +
Sbjct: 460 AGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGI 519

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
           +  +EH+ C+V LLSR G L++A  +I  MP +PDA + G+LLS+C   N   L E  +E
Sbjct: 520 EARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAE 579

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
            L +LEP NPGNY+ LSN YA+ G WNEV++VRD+MK KGLRKNPGCSWI++  ++H+ +
Sbjct: 580 KLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLL 639

Query: 757 ACDRSHPKTEEIYATLALLGMHVR 780
           A D+SHP+  +I   L  L M ++
Sbjct: 640 AGDKSHPQMTQIIENLDKLSMEMK 663



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 160/334 (47%), Gaps = 39/334 (11%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EAV +  +M  R F+        +L       D+  G  IH  ++K G     ++ V + 
Sbjct: 233 EAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQG--LVSDKCVSSA 290

Query: 122 LVVFYAKC-------------DALDVAS------------------RLFCRLRVK----N 146
           L+  Y KC             D +DV S                  RLF +L+ +    N
Sbjct: 291 LIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELN 350

Query: 147 VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHG 206
           V SW ++I    + G   +AL  F EMQ  GV P++  +P +L ACG +  +  G+A H 
Sbjct: 351 VVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHC 410

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE 266
           + L+ G    V+V S+LIDMY KCG ++ +R  FDG+  +N+V WN++I GY  +G  +E
Sbjct: 411 FSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKE 470

Query: 267 AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSSII 325
           A+ +F  M   G +P  +S T +LSA +     +EG    ++++   G+E      + ++
Sbjct: 471 AMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMV 530

Query: 326 NFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
              S+ G LE A  +  RM V  D   W  L++S
Sbjct: 531 TLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSS 564



 Score = 47.0 bits (110), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 36/227 (15%)

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
           +  ASL   R  H ++++  L   T + T L+  YA       A  V D+ P   +  ++
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFS 83

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            +I  ++       AL+ F  +  +G+ PD+    + + AC  AGL              
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGL-------------- 127

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
             +KP+ +  G    + S  G              D D+ +  SL+   +K N+   A  
Sbjct: 128 SALKPARQVHG----IASVSG-------------FDSDSFVQSSLVHMYIKCNQIRDAHR 170

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
           + + +   EPD   ++ AL  AYA  G  +E  ++   M + G++ N
Sbjct: 171 VFDRM--FEPDVV-SWSALVAAYARQGCVDEAKRLFSEMGDSGVQPN 214


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/684 (36%), Positives = 375/684 (54%), Gaps = 55/684 (8%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +Q HA ILK G F   + ++ TKL+  YA       A+ +   +   NVFS++ +I    
Sbjct: 33  RQAHAHILKTGLF--NDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFS 90

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +      AL  F +M   G+ PDN VLP+ +KAC  L  +   R VHG     GFD   F
Sbjct: 91  KFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSF 150

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V SSL+ MY KC  + +A +VFD M   +VV+W++++  Y + G  +EA R+F EM   G
Sbjct: 151 VQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSG 210

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V+P  +S   +++   +     E         + G E D   G++I +    VG LED  
Sbjct: 211 VQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD---GTTISSVLPAVGDLED-- 265

Query: 339 VVFSRMVERDIVTWNLLIASYV--QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
                      +   +LI  YV  Q   SD  V+S+++DMY KC       QVF+ +   
Sbjct: 266 -----------LVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHM 314

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           DV   N  +   +  G+   + RLF Q++ +G+  N++SW S+I    +NG+  EA ++F
Sbjct: 315 DVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELF 374

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            +MQ  GV+PN                                   + TI C L AC ++
Sbjct: 375 REMQIAGVKPN-----------------------------------SVTIPCLLPACGNI 399

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           A+L +G+A H + +R  +     + ++L+DMYAKCG I  ++  FD  P+K L  +NA+I
Sbjct: 400 AALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVI 459

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +GYAMHG A EA+ +F  +Q+ G  PD I+FT +L+ACS +GL  EG   F  M S + +
Sbjct: 460 AGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGI 519

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
           +  +EH+ C+V LLSR G L++A  +I  MP +PDA + G+LLS+C   N   L E  +E
Sbjct: 520 EARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAE 579

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
            L +LEP NPGNY+ LSN YA+ G WNEV++VRD+MK KGLRKNPGCSWI++  ++H+ +
Sbjct: 580 KLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLL 639

Query: 757 ACDRSHPKTEEIYATLALLGMHVR 780
           A D+SHP+  +I   L  L M ++
Sbjct: 640 AGDKSHPQMTQIIEKLDKLSMEMK 663



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 160/334 (47%), Gaps = 39/334 (11%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EAV +  +M  R F+        +L       D+  G  IH  ++K G     ++ V + 
Sbjct: 233 EAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQG--LVSDKCVSSA 290

Query: 122 LVVFYAKC-------------DALDVAS------------------RLFCRLRVK----N 146
           L+  Y KC             D +DV S                  RLF +L+ +    N
Sbjct: 291 LIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELN 350

Query: 147 VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHG 206
           V SW ++I    + G   +AL  F EMQ  GV P++  +P +L ACG +  +  G+A H 
Sbjct: 351 VVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHC 410

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE 266
           + L+ G    V+V S+LIDMY KCG ++ +R  FDG+  +N+V WN++I GY  +G  +E
Sbjct: 411 FSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKE 470

Query: 267 AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSSII 325
           A+ +F  M   G +P  +S T +LSA +     +EG    ++++   G+E      + ++
Sbjct: 471 AMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMV 530

Query: 326 NFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
              S+ G LE A  +  RM V  D   W  L++S
Sbjct: 531 TLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSS 564



 Score = 47.4 bits (111), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 36/227 (15%)

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
           +  ASL   R  H ++++  L   T + T L+  YA       A  V D+ P   +  ++
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFS 83

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            +I  ++       AL+ F  +  +G+ PD+    + + AC  AGL              
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGL-------------- 127

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
             +KP+ +  G                 +      D D+ +  SL+   +K N+   A  
Sbjct: 128 SALKPARQVHG-----------------IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHR 170

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
           + + +   EPD   ++ AL  AYA  G  +E  ++   M + G++ N
Sbjct: 171 VFDRM--FEPDVV-SWSALVAAYARQGCVDEAKRLFSEMGDSGVQPN 214


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/752 (31%), Positives = 405/752 (53%), Gaps = 36/752 (4%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           ++  L K  +++EA+ LL  +K R   +    YG +++ C   R    G+ +H ++ + G
Sbjct: 49  EVWRLCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELG 108

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
              A + Y+   L+ FY+K   +    ++F R+ +++V +W+++I          KA   
Sbjct: 109 --LAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDT 166

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  M++  + P+     ++LKAC     +   R +H  V   G +  V VA++LI MY K
Sbjct: 167 FERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSK 226

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG++  A ++F  M  RNVV+W ++I    Q+    EA  ++ +M   G+ P  V+  S+
Sbjct: 227 CGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSL 286

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           L++    +AL+ G++ H+     G+E D V+ +++I  Y K   ++DA   F RM +RD+
Sbjct: 287 LNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDV 346

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCER----------------------IDNAK 387
           ++W+ +IA Y QSG  D      +  +  +  R                      ++  +
Sbjct: 347 ISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGR 406

Query: 388 QVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           Q+   I       D  L   +   YA  G   EA ++F +M+    + N+++W S++  +
Sbjct: 407 QIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME----NKNVVAWASLLTMY 462

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
           ++ G +  A+ +F +M +     N+++W  +I+G  Q+    +       M   G +P  
Sbjct: 463 IKCGDLTSAEKVFSEMST----RNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDR 518

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            TI   L AC  +++L  G+ +H   ++  L   T + TSL+ MY+KCG + +A+ VFD 
Sbjct: 519 VTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDK 578

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
             +++   +NAM++GY  HG+  EA+ LFK + ++ + P+ ITFT +++AC  AGLV EG
Sbjct: 579 ISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEG 638

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
            E+F  M  D ++KP  +H+GC+V+LL R G L EA   I  MPC+PD  +  +LL  C 
Sbjct: 639 REIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACK 698

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
             +  +LAE+ + H+L+LEP N   YV LSN YA +GRW++ ++VR +M +KGL+K+ G 
Sbjct: 699 SHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGE 758

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           S I+I   +H FVA D +HP+ + I+A L +L
Sbjct: 759 SSIEIDGRIHTFVAEDCAHPEIDSIHAELEML 790


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 278/856 (32%), Positives = 446/856 (52%), Gaps = 113/856 (13%)

Query: 6   FTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFH-QISSLSKEKQIREAV 64
           FT P +   SHTK   P+ L + H   L +S N  ++L   + H Q  ++S     +EA+
Sbjct: 39  FTVPKSSLTSHTKTHSPI-LQRLH--NLCDSGNLNDALNLLHSHAQNGTVSSSDISKEAI 95

Query: 65  DLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV-ETKLV 123
                             G LL+ C + ++++ G+++HA  L +     RN+ V  T+++
Sbjct: 96  ------------------GILLRACGHHKNIHVGRKVHA--LVSASHKLRNDVVLSTRII 135

Query: 124 VFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDN 182
             Y+ C +   +  +F   + K++F + A++    R  L   A+  F+E+     ++PDN
Sbjct: 136 AMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDN 195

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
           F LP V KAC  +  V  G AVH   LK G     FV ++LI MYGKCG +E A KVF+ 
Sbjct: 196 FTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFET 255

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL---EGVEPTRVSVTSILSASANLDAL 299
           M  RN+V+WNS++    +NG   E   VF  + +   EG+ P   ++ +++ A A +  +
Sbjct: 256 MRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEV 315

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
             G   H +A   G+  +  + +S+++ YSK G L +A  +F     +++V+WN +I  Y
Sbjct: 316 RMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGY 375

Query: 360 VQSGQ-----------------------------------------------------SD 366
            + G                                                       D
Sbjct: 376 SKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKD 435

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
            +VA++ V  YAKC  +D A++VF  +  + V  WN L+ A+A  G  G++  LF  M  
Sbjct: 436 ELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMD 495

Query: 427 EGISPNIISWNSVIL---------------GF-LRNG-QMNE-----AKDMFLQMQSLGV 464
            G+ P+  +  S++L               GF LRNG +++E        +++Q  S+ +
Sbjct: 496 SGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLL 555

Query: 465 ---------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
                      +L+ W  +I+G +QN    EA+  F++ML  GIKP    +T  L AC+ 
Sbjct: 556 GKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQ 615

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           V++LR G+ +H + ++  L     +  +L+DMYAKCG + Q++ +FD    K+  V+N +
Sbjct: 616 VSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVI 675

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I+GY +HG  ++A+ LF+ +Q KG  PDS TF  +L AC+HAGLV EGL+    M + + 
Sbjct: 676 IAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYG 735

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           VKP +EH+ CVV++L R G L EAL+++  MP +PD+ I  SLLS+C    + E+ E +S
Sbjct: 736 VKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVS 795

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           + LL+LEP+   NYV LSN YA  G+W+EV +VR  MKE GL K+ GCSWI+IG  ++ F
Sbjct: 796 KKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRF 855

Query: 756 VACDRSHPKTEEIYAT 771
           +  D S  ++++I  T
Sbjct: 856 LVSDGSLSESKKIQQT 871


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 263/785 (33%), Positives = 407/785 (51%), Gaps = 91/785 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC----DALDVASRLFC 140
           +L+GCV    +  G Q+H R +  G   A +  ++T+LV  Y       DA+ V S L  
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAG-LHATDTALQTRLVGMYVLARRFRDAVAVFSSL-P 102

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM--QEDGVSPDNFVLPNVLKACGALGWV 198
           R        W  +I      G    AL+ +++M        PD+   P V+K+C ALG +
Sbjct: 103 RGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAI 162

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
             GR VH     +G DG +FV S+LI MY   G L +AR+VFDGM  R+ V WN M+ GY
Sbjct: 163 ALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGY 222

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           V+ G    A+ +F +M   G EP   ++   LS SA    L  G Q H +AV  G+E + 
Sbjct: 223 VKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEV 282

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
            + +++++ Y+K   L+D   +F  M   D+VTWN +I+  VQ+G               
Sbjct: 283 AVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKS 342

Query: 364 -------------------------------------QSDVVVASSIVDMYAKCERIDNA 386
                                                  DV + S++VD+Y KC  +  A
Sbjct: 343 GIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMA 402

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----L 441
           + V++S    DVV+ +T+++ Y   G S EA ++F  +  +GI PN ++  SV+     +
Sbjct: 403 QSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASM 462

Query: 442 GFLRNGQM-----------------NEAKDMFLQMQSLGVQPNL---------ITWTTLI 475
             ++ GQ                  +   DM+ +   L +   +         +TW ++I
Sbjct: 463 AAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMI 522

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           S   QN    EA+  F+EM   G+K S  TI+  LSAC  + ++  G+ IHG +I+  + 
Sbjct: 523 SSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIR 582

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
                 ++L+DMY KCGN+  A RVF+  P K    +N++I+ Y  +GL  E+++L +++
Sbjct: 583 ADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHM 642

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           Q++G   D +TF  +++AC+HAG V EGL LF  M  ++Q+ P MEHF C+V+L SR G 
Sbjct: 643 QEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGK 702

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           LD+A+ +I+ MP  PDA I G+LL  C      ELAE  S+ L +L+P N G YV +SN 
Sbjct: 703 LDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNI 762

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            A +GRW+ VS+VR +MK+  ++K PG SW+ +    H+FVA D+SHP +E+IY +L  +
Sbjct: 763 NAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSI 822

Query: 776 GMHVR 780
            + +R
Sbjct: 823 LLELR 827



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 12/302 (3%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           +EAV +   +  +  +        +L  C     M  GQ++H+  LKN   +    YVE+
Sbjct: 431 QEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNA--YEGRCYVES 488

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            L+  YAKC  LD++  +F ++  K+  +W ++I    + G  E+AL  F EM  +GV  
Sbjct: 489 ALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKY 548

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
            N  + +VL AC +L  + +G+ +HG V+K      +F  S+LIDMYGKCG+LE A +VF
Sbjct: 549 SNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVF 608

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           + M  +N V+WNS+I  Y   GL +E++ +   M  EG +   V+  +++SA A+   + 
Sbjct: 609 ESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQ 668

Query: 301 EGKQ-----AHAVAVINGMELDNVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNL 354
           EG +          +   ME      + +++ YS+ G L+ A E++     + D   W  
Sbjct: 669 EGLRLFRCMTEEYQIAPRME----HFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGA 724

Query: 355 LI 356
           L+
Sbjct: 725 LL 726



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 15/225 (6%)

Query: 23  LKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY 82
           L LS    +K+   D        ++   ISS ++  +  EA++L  EM     +      
Sbjct: 500 LDLSHYIFSKISAKDEV------TWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTI 553

Query: 83  GELLQGCVYKRDMYTGQQIHARILK---NGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
             +L  C     +Y G++IH  ++K     D FA     E+ L+  Y KC  L+ A R+F
Sbjct: 554 SSVLSACASLPAIYYGKEIHGVVIKGPIRADLFA-----ESALIDMYGKCGNLEWAHRVF 608

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +  KN  SW +II      GL ++++     MQE+G   D+     ++ AC   G V 
Sbjct: 609 ESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQ 668

Query: 200 FG-RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
            G R       +      +   + ++D+Y + G L++A ++   M
Sbjct: 669 EGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDM 713


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 263/785 (33%), Positives = 407/785 (51%), Gaps = 91/785 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC----DALDVASRLFC 140
           +L+GCV    +  G Q+H R +  G   A +  ++T+LV  Y       DA+ V S L  
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAG-LHATDTALQTRLVGMYVLARRFRDAVAVFSSL-P 102

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM--QEDGVSPDNFVLPNVLKACGALGWV 198
           R        W  +I      G    AL+ +++M        PD+   P V+K+C ALG +
Sbjct: 103 RGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAI 162

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
             GR VH     +G DG +FV S+LI MY   G L +AR+VFDGM  R+ V WN M+ GY
Sbjct: 163 ALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGY 222

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           V+ G    A+ +F +M   G EP   ++   LS SA    L  G Q H +AV  G+E + 
Sbjct: 223 VKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEV 282

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
            + +++++ Y+K   L+D   +F  M   D+VTWN +I+  VQ+G               
Sbjct: 283 AVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKS 342

Query: 364 -------------------------------------QSDVVVASSIVDMYAKCERIDNA 386
                                                  DV + S++VD+Y KC  +  A
Sbjct: 343 GIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMA 402

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----L 441
           + V++S    DVV+ +T+++ Y   G S EA ++F  +  +GI PN ++  SV+     +
Sbjct: 403 QSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASM 462

Query: 442 GFLRNGQM-----------------NEAKDMFLQMQSLGVQPNL---------ITWTTLI 475
             ++ GQ                  +   DM+ +   L +   +         +TW ++I
Sbjct: 463 AAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMI 522

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           S   QN    EA+  F+EM   G+K S  TI+  LSAC  + ++  G+ IHG +I+  + 
Sbjct: 523 SSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIR 582

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
                 ++L+DMY KCGN+  A RVF+  P K    +N++I+ Y  +GL  E+++L +++
Sbjct: 583 ADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHM 642

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           Q++G   D +TF  +++AC+HAG V EGL LF  M  ++Q+ P MEHF C+V+L SR G 
Sbjct: 643 QEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGK 702

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           LD+A+ +I+ MP  PDA I G+LL  C      ELAE  S+ L +L+P N G YV +SN 
Sbjct: 703 LDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNI 762

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            A +GRW+ VS+VR +MK+  ++K PG SW+ +    H+FVA D+SHP +E+IY +L  +
Sbjct: 763 NAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSI 822

Query: 776 GMHVR 780
            + +R
Sbjct: 823 LLELR 827



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 12/302 (3%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           +EAV +   +  +  +        +L  C     M  GQ++H+  LKN   +    YVE+
Sbjct: 431 QEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNA--YEGRCYVES 488

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            L+  YAKC  LD++  +F ++  K+  +W ++I    + G  E+AL  F EM  +GV  
Sbjct: 489 ALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKY 548

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
            N  + +VL AC +L  + +G+ +HG V+K      +F  S+LIDMYGKCG+LE A +VF
Sbjct: 549 SNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVF 608

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           + M  +N V+WNS+I  Y   GL +E++ +   M  EG +   V+  +++SA A+   + 
Sbjct: 609 ESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQ 668

Query: 301 EGKQ-----AHAVAVINGMELDNVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNL 354
           EG +          +   ME      + +++ YS+ G L+ A E++     + D   W  
Sbjct: 669 EGLRLFRCMTEEYQIAPRME----HFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGA 724

Query: 355 LI 356
           L+
Sbjct: 725 LL 726



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 15/225 (6%)

Query: 23  LKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY 82
           L LS    +K+   D        ++   ISS ++  +  EA++L  EM     +      
Sbjct: 500 LDLSHYIFSKISAKDEV------TWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTI 553

Query: 83  GELLQGCVYKRDMYTGQQIHARILK---NGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
             +L  C     +Y G++IH  ++K     D FA     E+ L+  Y KC  L+ A R+F
Sbjct: 554 SSVLSACASLPAIYYGKEIHGVVIKGPIRADLFA-----ESALIDMYGKCGNLEWAHRVF 608

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +  KN  SW +II      GL ++++     MQE+G   D+     ++ AC   G V 
Sbjct: 609 ESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQ 668

Query: 200 FG-RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
            G R       +      +   + ++D+Y + G L++A ++   M
Sbjct: 669 EGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDM 713


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/782 (32%), Positives = 406/782 (51%), Gaps = 93/782 (11%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           + Y + L+ C   + +  GQQ+HA  LK  ++   + +++TK V  Y KC +   A ++F
Sbjct: 47  QAYSQALELCASHKALPQGQQLHAHFLKTQNYL-DSVFLDTKFVHMYGKCGSFYDAVKVF 105

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
            ++  + +F+W A+IG     G   +A+  + EM+  GVS D F  P VLKACGA     
Sbjct: 106 DKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERR 165

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG--MIARNVVAWNSMIVG 257
            G  +HG  +K G+ G VFV ++LI MY KCGDL  AR +FD   M   + V+WNS+I  
Sbjct: 166 LGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISA 225

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           +V  G + EA+ +F  M   GVE    +  S L A      +  G+  HAV + +    D
Sbjct: 226 HVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTD 285

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ---------------- 361
             + +++I  Y+  G +EDAE VF  M+ +D V+WN L++  VQ                
Sbjct: 286 VYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQD 345

Query: 362 SGQ------------------------------------SDVVVASSIVDMYAKCERIDN 385
           SGQ                                    S++ + +S++DMY KC  +  
Sbjct: 346 SGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKY 405

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL---- 441
               F  +  +D++ W T++A YA      +A  L  ++QLE +  + +   S++L    
Sbjct: 406 MGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSG 465

Query: 442 -----------GFLRNGQMNE-------------------AKDMFLQMQSLGVQPNLITW 471
                      G++  G + +                   A+ +F  + S     ++++W
Sbjct: 466 LKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHVFESINS----KDIVSW 521

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           T++I+    N    EA+  F  ++ET I+P   T+   L A   ++SL+ G+ IHG+LIR
Sbjct: 522 TSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIR 581

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
               L   I  SLVDMYA+CG +  A+ +F+    ++L ++ +MI+   MHG   +A+ L
Sbjct: 582 KGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDL 641

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  +  + + PD ITF  +L ACSH+GLV EG + F  M ++++++P  EH+ C+V+LL+
Sbjct: 642 FSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLA 701

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R  +L+EA   +  MP +P A +  +LL  C   +  +L E  ++ LLQL  +N GNYV 
Sbjct: 702 RSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVL 761

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
           +SN +AA GRWN+V +VR IMK   L+K PGCSWI++  ++H F+A D+SHP+   IY  
Sbjct: 762 VSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLK 821

Query: 772 LA 773
           LA
Sbjct: 822 LA 823



 Score =  187 bits (474), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 134/516 (25%), Positives = 243/516 (47%), Gaps = 59/516 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+   E +  EA+ L   M+    +     +   LQ C     +  G+ IHA ILK+  
Sbjct: 223 ISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNH 282

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
           F   + YV   L+  YA C  ++ A R+F  +  K+  SW  ++    +  +   A+  F
Sbjct: 283 F--TDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHF 340

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +MQ+ G  PD   + N++ A G    +  G  VH Y +K G D  + + +SLIDMYGKC
Sbjct: 341 QDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKC 400

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             ++     F+ M  +++++W ++I GY QN  + +A+ +  ++ LE ++   + + SIL
Sbjct: 401 CCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSIL 460

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A + L +    K+ H   +  G+  D ++ ++I+N Y ++ L++ A  VF  +  +DIV
Sbjct: 461 LACSGLKSEKLIKEIHGYVLKGGLA-DILIQNAIVNVYGELALVDYARHVFESINSKDIV 519

Query: 351 TWNLLIASYVQSG-----------------QSDVV------------------------- 368
           +W  +I   V +G                 + D++                         
Sbjct: 520 SWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFL 579

Query: 369 ----------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                     +A+S+VDMYA+C  ++NA+ +FN +  RD++LW +++ A    G   +A 
Sbjct: 580 IRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAI 639

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISG 477
            LF +M  E + P+ I++ +++     +G + E K  F  M++   ++P    +  L+  
Sbjct: 640 DLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDL 699

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           L +++   EA  F + M    I+PS       L AC
Sbjct: 700 LARSNSLEEAYHFVRNM---PIEPSAEVWCALLGAC 732



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 169/400 (42%), Gaps = 70/400 (17%)

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV-LGSSIINFYSKVGLLEDAEV 339
           P + + +  L   A+  AL +G+Q HA  +     LD+V L +  ++ Y K G   DA  
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN-SIILRD- 397
           VF +M ER I TWN +I + V +G+         +++Y +   +  +   F    +L+  
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAGR-----YVEAIELYKEMRVLGVSLDAFTFPCVLKAC 158

Query: 398 ------------------------VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
                                   V + N L+A YA  G  G A  LF    +E   P  
Sbjct: 159 GAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDP-- 216

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
           +SWNS+I   +  G+  EA  +F +MQ +GV+ N                          
Sbjct: 217 VSWNSIISAHVGEGESLEALSLFRRMQEVGVESN-------------------------- 250

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
                    T T   AL AC     ++ GR IH  +++ +      +  +L+ MYA CG 
Sbjct: 251 ---------TYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQ 301

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +  A+RVF     K+   +N ++SG   + +  +A+  F+++Q  G  PD ++  N++ A
Sbjct: 302 MEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAA 361

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
              +  +  G+E+       H +  +M     ++++  +C
Sbjct: 362 SGRSANLLAGMEVHAYAIK-HGIDSNMHIGNSLIDMYGKC 400


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/764 (31%), Positives = 401/764 (52%), Gaps = 93/764 (12%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           ++HA ++K G  F+R+  +   LV  Y+KC     A +L       +V SW++++    +
Sbjct: 2   ELHAHLIKFG--FSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQ 59

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            G  E+AL+ F EM   GV  + F  P+VLKAC     +  GR VHG  +  GF+   FV
Sbjct: 60  NGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFV 119

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           A++L+ MY KCG L+++R++F G++ RNVV+WN++   YVQ+ L  EA+ +F EM   G+
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P   S++ IL+A A L   D G++ H + +  G++LD    +++++ YSK G +E A  
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 340 VFSRMVERDIVTWNLLIASYV--------------------------------------- 360
           VF  +   D+V+WN +IA  V                                       
Sbjct: 240 VFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGF 299

Query: 361 -------------QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                            SD+  A  +VDMY+KCE +D+A++ ++S+  +D++ WN L++ 
Sbjct: 300 KELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISG 359

Query: 408 YADLGRSGEASRLFYQMQLE-----------------------------------GISPN 432
           Y+  G   +A  LF +M  E                                   GI  +
Sbjct: 360 YSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSD 419

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
               NS++  + +   ++EA  +F +        +L+ +T++I+  +Q   G EA+  + 
Sbjct: 420 FYVINSLLDTYGKCNHIDEASKIFEER----TWEDLVAYTSMITAYSQYGDGEEALKLYL 475

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           +M +  IKP     +  L+AC ++++   G+ +H + I+           SLV+MYAKCG
Sbjct: 476 QMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCG 535

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           +I  A R F   P++ +  ++AMI GYA HG   EAL LF  + + G+ P+ IT  ++L 
Sbjct: 536 SIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLC 595

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           AC+HAGLVNEG + F  M     +KP+ EH+ C+++LL R G L+EA+ ++ ++P + D 
Sbjct: 596 ACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADG 655

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            + G+LL         EL +  ++ L  LEP+  G +V L+N YA++G W  V++VR  M
Sbjct: 656 FVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFM 715

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLG 776
           K+  ++K PG SWI+I ++++ F+  DRSH +++EIYA L  LG
Sbjct: 716 KDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLG 759


>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Glycine max]
          Length = 945

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/799 (32%), Positives = 442/799 (55%), Gaps = 38/799 (4%)

Query: 17  TKPQKPLKL---SQTHL-----TKLRESDNSYESLYKSYFH----QISSLSKEKQIREAV 64
           +KP  PL +   S T L     T+   + NS     +S+      Q++ L     + EAV
Sbjct: 10  SKPWHPLLIPSHSSTQLEWHGSTRALANSNSVSMTQRSHPKLVDTQLNQLCANGSLSEAV 69

Query: 65  DLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVV 124
            +L  +  +  ++ P  +  LLQ C+ K  +  G+++H RI   G     N +VETKLV 
Sbjct: 70  AILDSLAQQGSKVRPITFMNLLQACIDKDCILVGRELHTRI---GLVRKVNPFVETKLVS 126

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
            YAKC  LD A ++F  +R +N+F+W+A+IG   R    E+ +  F +M + GV PD+F+
Sbjct: 127 MYAKCGHLDEARKVFDEMRERNLFTWSAMIGACSRDLKWEEVVELFYDMMQHGVLPDDFL 186

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           LP VLKACG    +  GR +H  V++ G    + V +S++ +Y KCG++  A K+F  M 
Sbjct: 187 LPKVLKACGKFRDIETGRLIHSLVIRGGMCSSLHVNNSILAVYAKCGEMSCAEKIFRRMD 246

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            RN V+WN +I GY Q G  E+A + F  M  EG+EP  V+   ++++ + L   D    
Sbjct: 247 ERNCVSWNVIITGYCQRGEIEQAQKYFDAMQEEGMEPGLVTWNILIASYSQLGHCDIAMD 306

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM----VERDIVTW-------- 352
                   G+  D    +S+I+ +++ G + +A  +   M    VE + +T         
Sbjct: 307 LMRKMESFGITPDVYTWTSMISGFTQKGRINEAFDLLRDMLIVGVEPNSITIASAASACA 366

Query: 353 ---NLLIASYVQSGQ------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
              +L + S + S         D+++ +S++DMYAK   ++ A+ +F+ ++ RDV  WN+
Sbjct: 367 SVKSLSMGSEIHSIAVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIFDVMLERDVYSWNS 426

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           ++  Y   G  G+A  LF +MQ     PN+++WN +I GF++NG  +EA ++FL+++  G
Sbjct: 427 IIGGYCQAGFCGKAHELFMKMQESDSPPNVVTWNVMITGFMQNGDEDEALNLFLRIEKDG 486

Query: 464 -VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
            ++PN+ +W +LISG  QN   ++A+  F++M  + + P+  T+   L ACT++ + +  
Sbjct: 487 KIKPNVASWNSLISGFLQNRQKDKALQIFRQMQFSNMAPNLVTVLTILPACTNLVAAKKV 546

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           + IH    R +L     +  + +D YAK GNI  +++VFD    K++  +N+++SGY +H
Sbjct: 547 KEIHCCATRRNLVSELSVSNTFIDSYAKSGNIMYSRKVFDGLSPKDIISWNSLLSGYVLH 606

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G +  AL LF  +++ G+ P  +T T+I++A SHA +V+EG   F  +  ++Q++  +EH
Sbjct: 607 GCSESALDLFDQMRKDGLHPSRVTLTSIISAYSHAEMVDEGKHAFSNISEEYQIRLDLEH 666

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           +  +V LL R G L +AL  I  MP +P++ +  +LL+ C       +A +  EH+L+L+
Sbjct: 667 YSAMVYLLGRSGKLAKALEFIQNMPVEPNSSVWAALLTACRIHKNFGMAIFAGEHMLELD 726

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC-DRS 761
           P+N      LS AY+  G+  E  ++  + KEK ++   G SWI++   +H FV   D+S
Sbjct: 727 PENIITQHLLSQAYSVCGKSWEAQKMTKLEKEKFVKMPVGQSWIEMNNMVHTFVVGDDQS 786

Query: 762 HPKTEEIYATLALLGMHVR 780
            P  ++I++ L  +G +V+
Sbjct: 787 IPYLDKIHSWLKRVGENVK 805


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/782 (31%), Positives = 416/782 (53%), Gaps = 69/782 (8%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +   S++ Q    ++L+ +    NF      Y +LL  C   + +  G QIHA I K+G 
Sbjct: 31  VPQFSEDPQTTAILNLIDK---GNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG- 86

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
             + +  +   L+  Y+KC     A +L       ++ SW+A+I    + GL   AL+ F
Sbjct: 87  -LSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAF 145

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EM   GV  + F   +VLKAC  +  +  G+ VHG V+  GF+G VFVA++L+ MY KC
Sbjct: 146 HEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKC 205

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
            +  +++++FD +  RNVV+WN++   YVQ     EA+ +FYEM L G++P   S++S++
Sbjct: 206 DEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           +A   L     GK  H   +  G + D    +++++ Y+KVG L DA  VF ++ + DIV
Sbjct: 266 NACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIV 325

Query: 351 TWNLLIASYV-------------------------QSGQSDVVVASSIVDMYAKCERIDN 385
           +WN +IA  V                            +SD+ V+  +VDMY+KC+ +++
Sbjct: 326 SWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLED 385

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------------- 432
           A+  FN +  +D++ WN +++ Y+      EA  LF +M  EGI  N             
Sbjct: 386 ARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAG 445

Query: 433 ----------------------IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
                                 I   NS+I  + +   + +A+ +F +  ++G   +L++
Sbjct: 446 LQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEEC-TIG---DLVS 501

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           +T++I+   Q   G EA+  F EM +  +KP     +  L+AC ++++   G+ +H +++
Sbjct: 502 FTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 561

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           ++   L      SLV+MYAKCG+I  A R F     + +  ++AMI G A HG   +AL 
Sbjct: 562 KYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQ 621

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF  + ++G+ P+ IT  ++L AC+HAGLV E    F  M      KP  EH+ C+++LL
Sbjct: 622 LFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLL 681

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
            R G ++EA+ ++  MP + +A + G+LL       + EL    +E L  LEP+  G +V
Sbjct: 682 GRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHV 741

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            L+N YA++G+W  V++VR +M++  ++K PG SWI++ ++++ F+  DRSH +++EIYA
Sbjct: 742 LLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYA 801

Query: 771 TL 772
            L
Sbjct: 802 KL 803



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 14/217 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHA 103
           S+   I++ ++  Q  EA+ L  EM+  + ++ P+ +    LL  C        G+Q+H 
Sbjct: 501 SFTSMITAYAQYGQGEEALKLFLEMQ--DMELKPDRFVCSSLLNACANLSAFEQGKQLHV 558

Query: 104 RILKNG---DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
            ILK G   D FA N      LV  YAKC ++D A R F  L  + + SW+A+IG   + 
Sbjct: 559 HILKYGFVLDIFAGN-----SLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQH 613

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFV 219
           G   +AL  F +M ++GVSP++  L +VL AC   G V   +     + ++ GF      
Sbjct: 614 GHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEH 673

Query: 220 ASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
            + +ID+ G+ G + EA ++ + M    N   W +++
Sbjct: 674 YACMIDLLGRAGKINEAVELVNKMPFEANASVWGALL 710


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/755 (31%), Positives = 406/755 (53%), Gaps = 42/755 (5%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           ++  L K  ++REA+ LL  +K R   +    YG +++ C   R    G+ +H ++ + G
Sbjct: 27  EVWRLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELG 86

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
                + Y+   L+ FY+K + +  A ++F R+ +++V +W+++I          KA   
Sbjct: 87  --VEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDT 144

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  M +  + P+     ++LKAC     +  GR +H  V  +G +  V VA++LI MY K
Sbjct: 145 FERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSK 204

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG++  A +VF  M  RNVV+W ++I    Q+    EA  ++ +M   G+ P  V+  S+
Sbjct: 205 CGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSL 264

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           L++    +AL+ G++ H+     G+E D ++ +++I  Y K   +++A  +F RM +RD+
Sbjct: 265 LNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDV 324

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI----ILR--------- 396
           ++W+ +IA Y QSG  D     SI +++   ER+       N +    ILR         
Sbjct: 325 ISWSAMIAGYAQSGYKD---KESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALE 381

Query: 397 ----------------DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
                           D  L   +   YA  G   EA ++F +M     + N+++W S +
Sbjct: 382 QGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMA----NKNVVAWTSFL 437

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             +++ G ++ A+ +F +M +     N+++W  +I+G  QN    +       M   G +
Sbjct: 438 SMYIKCGDLSSAEKVFSEMPT----RNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQ 493

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P   T+   L AC  +A L  G+ +H   ++  L   T + TSL+ MY+KCG + +A+ V
Sbjct: 494 PDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTV 553

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           FD   +++   +NAM++GY  HG  +EA+ LFK + ++ + P+ IT T +++ACS AGLV
Sbjct: 554 FDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLV 613

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EG E+F  M  D ++ P  +H+GC+V+LL R G L EA   I +MPC+PD  +  +LL 
Sbjct: 614 QEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLG 673

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C   N  +LAE  + H+L+LEP     Y+ LSN YA +GRW++ ++VR +M ++GL+K+
Sbjct: 674 ACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKD 733

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            G S I+I   +H FVA D +HP+ + I+A L  L
Sbjct: 734 RGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETL 768


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/614 (37%), Positives = 361/614 (58%), Gaps = 27/614 (4%)

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC- 216
           C+ G   +AL    +M E+G+ P +    ++L+ C     +   + +H ++++  F+ C 
Sbjct: 40  CKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFE-CQ 98

Query: 217 -VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            + + + L+ +Y K G L EAR+VFD M  +NVV+W +MI  Y ++   +EA+  FYEM 
Sbjct: 99  DISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQ 158

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
             G++P   +  SIL A  +L+ L E    H   V  G E +  +G+ +++ Y+K G +E
Sbjct: 159 DVGIQPNHFTFASILPACTDLEVLGE---FHDEIVKGGFESNVFVGNGLVDMYAKRGCIE 215

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKCER 382
            A  +F +M +RD+V+WN +IA YVQ+G             + DV+  ++++  YA+C  
Sbjct: 216 FARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGD 275

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG 442
           ++NA ++F  +  +++V WNT++A Y   G   EA +LF  M       N+ISWN+VI G
Sbjct: 276 VENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMP----ERNVISWNAVISG 331

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
           F +NGQ+ EA  +F  M     + N+++W  +I+G +QN     A+  F +M    +KP+
Sbjct: 332 FAQNGQVEEALKLFKTMP----ECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPN 387

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
           T T    L AC  +A L  G   H  +IR        +  +LV MYAKCG+I  A++VFD
Sbjct: 388 TETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFD 447

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               ++    +AMI GYA++G + E+L LF+ +Q  G+ PD +TF  +L+AC HAGLV+E
Sbjct: 448 RMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDE 507

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G + F  M   + + P+MEH+GC+++LL R G  DEA  +I  MP  PDA + GSLLS C
Sbjct: 508 GRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSAC 567

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
              N  +L E +++HL+ L P NP  YV LSN YAA+GRW+++  VR+ MK++ ++K  G
Sbjct: 568 RTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLG 627

Query: 743 CSWIQIGEELHVFV 756
           CSWI I +++H F+
Sbjct: 628 CSWIVIKKQVHAFL 641



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 132/251 (52%), Gaps = 10/251 (3%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN      ++  +A+   ++ A +LF  +   NV SW A+I    + G +E AL  F +M
Sbjct: 320 RNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQM 379

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           Q   + P+      VL AC AL  +  G   H  V++ GF   V V ++L+ MY KCG +
Sbjct: 380 QMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSI 439

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           E+ARKVFD M  ++  + ++MIVGY  NG ++E++ +F +M   G++P RV+   +LSA 
Sbjct: 440 EDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSAC 499

Query: 294 ANLDALDEGKQAHAVA-----VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VER 347
            +   +DEG+Q   +      +   ME    +    I+   + G  ++A  + ++M ++ 
Sbjct: 500 CHAGLVDEGRQYFDIMTRFYHITPAMEHYGCM----IDLLGRAGCFDEANDLINKMPIKP 555

Query: 348 DIVTWNLLIAS 358
           D   W  L+++
Sbjct: 556 DADMWGSLLSA 566



 Score = 99.4 bits (246), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 100/199 (50%), Gaps = 13/199 (6%)

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           L+  L +     EA+   Q+M+E GI P ++T    L  C +  SL + + +H ++I+  
Sbjct: 35  LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94

Query: 534 L-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
             C    +   LV +Y K G++ +A+RVFD  P K +  + AMI+ YA H    EAL  F
Sbjct: 95  FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFF 154

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV----VN 648
             +Q  GI P+  TF +IL AC+        LE+ +G F D  VK   E    V    V+
Sbjct: 155 YEMQDVGIQPNHFTFASILPACTD-------LEV-LGEFHDEIVKGGFESNVFVGNGLVD 206

Query: 649 LLSRCGNLDEALRVILTMP 667
           + ++ G ++ A  +   MP
Sbjct: 207 MYAKRGCIEFARELFDKMP 225


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/804 (31%), Positives = 409/804 (50%), Gaps = 88/804 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVY-KRDMYTGQQIHARILKNG 109
           IS L  +K   + + L + M   N       +  +L+ C   K      +QIHA+I+ +G
Sbjct: 83  ISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHG 142

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
             F  +  V   L+  Y+K   +D+A  +F RL +K+  SW A+I    + G  ++A++ 
Sbjct: 143 --FGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILL 200

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F +M +  V P  +V  +VL AC  +     G  +HG+++K G     FV ++L+ +Y +
Sbjct: 201 FCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSR 260

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
            G+L  A ++F  M  R+ +++NS+I G  Q G ++ A+++F +M L+ ++P  V+V S+
Sbjct: 261 WGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASL 320

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           LSA A++ A  +GKQ H+  +  GM  D ++  S+++ Y K   +E A   F      ++
Sbjct: 321 LSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENV 380

Query: 350 VTWNLLIASYVQSG---------------------------------------------- 363
           V WN+++ +Y Q G                                              
Sbjct: 381 VLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQ 440

Query: 364 ------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                 Q +V V S ++DMYAK   +D A+ +   +   DVV W  ++A Y       EA
Sbjct: 441 VIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEA 500

Query: 418 SRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQM----------------------- 449
            +LF +M+ +GI  + I ++S I     +  L  GQ                        
Sbjct: 501 LKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSL 560

Query: 450 ----NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
                 A+D +L  + +  + N I+W  LISG  Q+    EA+  F +M + G++ +  T
Sbjct: 561 YARCGRAQDAYLAFEKIDAKDN-ISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFT 619

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
              A+SA  + A+++ G+ IH  +I+      T     L+ +Y+KCG+I  AKR F   P
Sbjct: 620 FGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMP 679

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            K +  +NAMI+GY+ HG   EA++LF+ ++Q G+ P+ +TF  +L+ACSH GLVNEGL 
Sbjct: 680 EKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLS 739

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
            F  M  +H + P  EH+ CVV+LL R   L  A   I  MP +PDA I  +LLS C   
Sbjct: 740 YFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVH 799

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
              E+ E+ + HLL+LEP++   YV LSN YA SG+W+   + R +MK++G++K PG SW
Sbjct: 800 KNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSW 859

Query: 746 IQIGEELHVFVACDRSHPKTEEIY 769
           I++   +H F   DR HP  E+IY
Sbjct: 860 IEVKNSIHAFFVGDRLHPLAEQIY 883



 Score =  276 bits (705), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 200/765 (26%), Positives = 352/765 (46%), Gaps = 104/765 (13%)

Query: 70  MKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129
           M+ R  +   + Y  L +GC     +   +++HARI K+G  F   + + ++L+  Y   
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSG--FDGEDVLGSRLIDIYLAH 58

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
             +D A +LF  +   NV  W  +I       L+ + L  F  M  + V+PD     +VL
Sbjct: 59  GEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVL 118

Query: 190 KAC-GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           +AC G          +H  ++  GF     V + LID+Y K G ++ A+ VF+ +  ++ 
Sbjct: 119 RACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDS 178

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
           V+W +MI G  QNG  +EAI +F +M    V PT    +S+LSA   ++    G+Q H  
Sbjct: 179 VSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGF 238

Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG----- 363
            V  G+  +  + ++++  YS+ G L  AE +FS+M  RD +++N LI+   Q G     
Sbjct: 239 IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298

Query: 364 -----------------------------------------------QSDVVVASSIVDM 376
                                                           SD+++  S++D+
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           Y KC  I+ A + F +    +VVLWN +L AY  LG   E+  +F QMQ+EG+ PN  ++
Sbjct: 359 YVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTY 418

Query: 437 NSVI-----LG------------------------------FLRNGQMNEAKDMFLQMQS 461
            S++     LG                              + ++G+++ A+ +  +++ 
Sbjct: 419 PSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR- 477

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
              + ++++WT +I+G TQ+    EA+  FQEM   GI+      + A+SAC  + +L  
Sbjct: 478 ---EEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQ 534

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G+ IH             I  +LV +YA+CG    A   F+   +K+   +NA+ISG+A 
Sbjct: 535 GQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQ 594

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS---DHQVKP 638
            G   EAL +F  + Q G++ +  TF + ++A ++   + +G ++   M     D + + 
Sbjct: 595 SGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEA 654

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
           S      ++ L S+CG++++A R    MP + +     ++++   +      A  + E +
Sbjct: 655 S----NVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGYSQHGYGSEAVSLFEEM 709

Query: 699 LQLE-PDNPGNYVALSNAYAASGRWNE-VSQVRDIMKEKGLRKNP 741
            QL    N   +V + +A +  G  NE +S  R + KE GL   P
Sbjct: 710 KQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKP 754


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 256/740 (34%), Positives = 394/740 (53%), Gaps = 64/740 (8%)

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA 152
           + + + + IH ++L  G       ++ +  + F +   AL V  RL        VF W  
Sbjct: 40  KSLASAELIHQQLLVQG-LPHDPTHIISMYLTFNSPAKALSVLRRL--HPSSHTVFWWNQ 96

Query: 153 IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212
           +I  +  +G  E  L  +  MQ  G  PD++  P VLKACG +     G +VH  V   G
Sbjct: 97  LIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASG 156

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV---VAWNSMIVGYVQNGLNEEAIR 269
           F+  VFV + L+ MYG+CG  E AR+VFD M  R V   V+WNS++  Y+Q G +  A++
Sbjct: 157 FEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMK 216

Query: 270 VFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328
           +F  MT + G+ P  VS+ ++L A A++ A   GKQ H  A+ +G+  D  +G+++++ Y
Sbjct: 217 MFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMY 276

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388
           +K G++E+A  VF RM  +D+V+WN ++  Y Q G+ D        D     E+I   K 
Sbjct: 277 AKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFD--------DALGLFEKIREEKI 328

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
             N      VV W+ ++A YA  G   EA  +F QM+L G  PN+++  S++ G    G 
Sbjct: 329 ELN------VVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGT 382

Query: 449 MNEAK-----------------------------DMFLQMQSLG--------VQP---NL 468
           +   K                             DM+ + +S          + P   ++
Sbjct: 383 LLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSV 442

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETG--IKPSTTTITCALSACTDVASLRNGRAIH 526
           +TWT LI G  Q+   NEA+  F +ML+    + P+  TI+CAL AC  + +LR GR IH
Sbjct: 443 VTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIH 502

Query: 527 GYLIRHDLCLPTPIVTS-LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
            Y++R+        V + L+DMY+K G++  A+ VFD    +    + ++++GY MHG  
Sbjct: 503 AYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRG 562

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            EAL +F  +Q+ G+ PD +TF  +L ACSH+G+V++G+  F GM  D  V P  EH+ C
Sbjct: 563 EEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYAC 622

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           +V+LLSR G LDEA+ +I  MP  P   +  +LLS C      EL EY +  LL+LE  N
Sbjct: 623 MVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGN 682

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
            G+Y  LSN YA +  W +V+++R +MK  G++K PGCSW+Q  +    F A D SHP +
Sbjct: 683 DGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMS 742

Query: 766 EEIYATLALLGMHVRLVSKV 785
           ++IY  L  L   ++ +  V
Sbjct: 743 QQIYDLLRDLMQRIKALGYV 762



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 4/196 (2%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKN 108
           I   ++  +  EA++L ++M   +  + P  +     L  C     +  G+QIHA +L+N
Sbjct: 449 IGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 508

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
             F +   +V   L+  Y+K   +D A  +F  +  +N  SW +++      G  E+AL 
Sbjct: 509 -RFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQ 567

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDGCVFVASSLIDMY 227
            F EMQ+ G+ PD      VL AC   G V  G    +G     G        + ++D+ 
Sbjct: 568 IFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLL 627

Query: 228 GKCGDLEEARKVFDGM 243
            + G L+EA ++  GM
Sbjct: 628 SRAGRLDEAMELIRGM 643


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 256/818 (31%), Positives = 430/818 (52%), Gaps = 102/818 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQI----GPEIYGELLQGCVYKRDMYTGQQI 101
           S+  +I++L +   +  A+ +L +   +N         E  G LLQ C  ++D+ TG+++
Sbjct: 7   SFLQEIAALCETDNLTTAL-ILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRL 65

Query: 102 HARILKNGDFFARNEYV-ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
           H  +  +  +  RN+YV  T+L+  YA C +   +  +F  +  KN+  W A++    R 
Sbjct: 66  HKFVSDSTHY--RNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRN 123

Query: 161 GLSEKALIGFVEMQED-GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
           GL    +  F+++  D    PDNF  P+V+KACG +  V  G  +HG V+K+G    VFV
Sbjct: 124 GLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFV 183

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT-LEG 278
            ++L+ MYGKCG ++EA KVFD M   N+V+WNSMI  + +NG + ++  +  EM   EG
Sbjct: 184 GNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEG 243

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           + P  V+V +IL   A    +D G   H +AV  G+  + ++ ++++  YSK G L +A+
Sbjct: 244 LLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQ 303

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSD-------------------------------- 366
           + F +   +++V+WN +I+++   G  +                                
Sbjct: 304 MSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLD 363

Query: 367 ---------------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                                V ++++ +  YAKC  +++A++VF+ I  + V  WN L+
Sbjct: 364 KLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALI 423

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG----------------FLRNG-- 447
             +A  G   +A  L +QM   G  P+  + +S++L                  LRNG  
Sbjct: 424 GGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLE 483

Query: 448 -----------------QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
                            + + A+ +F +M+      NL++W  +ISG +QN    E++  
Sbjct: 484 TDFFVGTSLLSHYIHCGKASSARVLFDRMKD----KNLVSWNAMISGYSQNGLPYESLAL 539

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           F++ L  GI+     I     AC+ +++LR G+  HGY+++        +  S++DMYAK
Sbjct: 540 FRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAK 599

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
            G I ++++VFD    K +  +NA+I  + +HG   EA+ L++ +++ G  PD  T+  I
Sbjct: 600 SGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGI 659

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L AC HAGLV EGL+ F  M + + ++P +EH+ C++++L+R G LD+ALR++  MP + 
Sbjct: 660 LMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEA 719

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
           D  I  SLL +C      E+ E +++ LL+LEPD   NYV LSN YA  G+W+ V +VR 
Sbjct: 720 DNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQ 779

Query: 731 IMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           +MKE GL+K+ GCSWI++G  ++ FV  D   PK+ EI
Sbjct: 780 MMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEI 817


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 264/790 (33%), Positives = 406/790 (51%), Gaps = 99/790 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEY-VETKLVVFYAKC----DALDVASRLF 139
           +L+GCV    +  G QIHAR + +G     N   + T+L+  Y       DA+ V S L 
Sbjct: 38  VLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSAL- 96

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM--QEDGVSPDNFVLPNVLKACGALGW 197
            R    +   W  +I      G    A++ +V+M       SPD   LP V+K+C ALG 
Sbjct: 97  PRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGA 156

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           +  GR VH     +G    V+V S+L+ MY   G L  AR  FDG+  R+ V WN M+ G
Sbjct: 157 MSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDG 216

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
            ++ G  + A+R+F  M   G EP   ++   LS  A    L  G Q H++AV  G+E +
Sbjct: 217 CIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPE 276

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------- 363
             + ++++  Y+K   L+DA  +F  M + D+VTWN +I+  VQ+G              
Sbjct: 277 VAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQR 336

Query: 364 --------------------------------------QSDVVVASSIVDMYAKCERIDN 385
                                                   DV + S++VD+Y KC  +  
Sbjct: 337 SGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRM 396

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG--- 442
           A+ ++++    DVV+ +T+++ Y   G S EA ++F  +  + I PN ++  SV+ G   
Sbjct: 397 AQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCAS 456

Query: 443 -------------FLRN-------------------GQMNEAKDMFLQMQSLGVQPNLIT 470
                         LRN                   G+++ +  +FL+M     Q + +T
Sbjct: 457 MAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMS----QKDEVT 512

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W ++IS  +QN    EA+  F++M   GIK +  TI+ ALSAC  + ++  G+ IHG  I
Sbjct: 513 WNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTI 572

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           +  +       ++L+DMYAKCGN+  A RVF+  P K    +N++IS Y  HGL  E+++
Sbjct: 573 KGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVS 632

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           L   +Q++G  PD +TF  +++AC+HAGLV EG++LF  M   + + P MEHF C+V+L 
Sbjct: 633 LLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLY 692

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
           SR G LD+A++ I  MP  PDA I G+LL  C      ELA+  S+ L +L+P N G YV
Sbjct: 693 SRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYV 752

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            +SN  A +GRW+ VS+VR +MK+  + K PG SW+ +    H+FVA D+SHP++E+IY 
Sbjct: 753 LMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYT 812

Query: 771 TLALLGMHVR 780
           +L  L   +R
Sbjct: 813 SLKTLLQELR 822



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 25/223 (11%)

Query: 23  LKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY 82
           L LS     K+ + D        ++   ISS S+  + +EA+DL  +M     +      
Sbjct: 495 LDLSHYIFLKMSQKDEV------TWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITI 548

Query: 83  GELLQGCVYKRDMYTGQQIHARILK---NGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
              L  C     +Y G++IH   +K     D FA     E+ L+  YAKC  L++A R+F
Sbjct: 549 SAALSACASLPAIYYGKEIHGVTIKGPIKADIFA-----ESALIDMYAKCGNLELALRVF 603

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +  KN  SW +II      GL ++++     MQE+G  PD+     ++ AC   G V 
Sbjct: 604 EFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVE 663

Query: 200 FGRAVHGYVLKVGFDGCVFVA------SSLIDMYGKCGDLEEA 236
            G  +   + K        +A      + ++D+Y + G L++A
Sbjct: 664 EGVQLFQCMTKK-----YLIAPRMEHFACMVDLYSRSGKLDKA 701


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/780 (31%), Positives = 427/780 (54%), Gaps = 50/780 (6%)

Query: 11  NPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEM 70
            P+ S TK  +PL    T   K + +D             ++ L K  ++ +A+  L  +
Sbjct: 32  QPRVSFTKIHQPL----TPKLKPKVTDA-----------HLNHLCKNGRLADAIACLDAI 76

Query: 71  KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD 130
                 + P  Y +LLQ C+ +     G+++HARI   G     N +VETKLV  YAKC 
Sbjct: 77  AQGGSNVKPNTYMQLLQSCIDQGSAELGRKLHARI---GLLEEMNPFVETKLVSMYAKCG 133

Query: 131 ALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLK 190
           +L  A ++F  +R +N+++W+A+IG   R  +  + +  F  M EDG+ PD F+LP +L+
Sbjct: 134 SLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKILQ 193

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA 250
           ACG  G    G+ +H  V++ G +  + V++S++ +Y KCG L  AR+ F+ M  R+ V+
Sbjct: 194 ACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVS 253

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           WNS+I GY Q G  E++ ++F +M  EG+EP  V+   ++++ +       GK   A+ +
Sbjct: 254 WNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQ-----SGKCDDAMEL 308

Query: 311 INGME-----LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           +  ME      D    +S+I+ +++      A  +F  M+   I    + + S + +  S
Sbjct: 309 MKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACAS 368

Query: 366 ---------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                                D++V +S++DMY+K   +++A++VF+ I+ +DV  WN++
Sbjct: 369 LKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSM 428

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG- 463
           +  Y   G  G+A  LF +M    + PN+++WN++I G+++NG  ++A D+F +M+  G 
Sbjct: 429 IGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGL 488

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
           ++ +  +W +LI+G  QN   N+A+  F++M    I+P++ T+   L AC ++ + +  +
Sbjct: 489 IKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKKVK 548

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
            IHG ++R +L     +   L+D YAK GNI  A+ +F    SK++  +N++I+GY +HG
Sbjct: 549 EIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHG 608

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
            +  AL LF  + + G+ P   TF +I+ A S +G+V++G ++F  M  D+Q+ P +EH 
Sbjct: 609 CSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHH 668

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
             +++LL R G L EA+  I  M  +PD+ I  +LL+         LA    E LL+LEP
Sbjct: 669 SAMIDLLGRSGKLGEAIEFIEDMAIEPDSCIWAALLTASKIHGNIGLAIRAGECLLELEP 728

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHP 763
            N   +  +   YA SG++ +VS++R   K    ++  GCSWI+    +H FVA DRS P
Sbjct: 729 SNFSIHQQILQMYALSGKFEDVSKLRKSEKRSETKQPLGCSWIEAKNIVHTFVADDRSRP 788


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/790 (33%), Positives = 407/790 (51%), Gaps = 93/790 (11%)

Query: 72  CRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDF-------------FARNEYV 118
           C    + P  +  LL+ C   R + T +QIH +I+  G                  + YV
Sbjct: 24  CFGRDVSPTHFASLLKEC---RSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYV 80

Query: 119 ETK-----LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
             K     +V  Y  C A   A  +  R+       W  ++  + + G  ++A+     M
Sbjct: 81  SPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRM 140

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              G  PD+F LP  LKACG L     GRA+HG +   GF+  VFV ++L+ MY +CG L
Sbjct: 141 LRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSL 200

Query: 234 EEARKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTL---EGVEPTR---V 284
           E+A  VFD +  +   +V++WNS++  +V+      A+ +F EM++   E     R   +
Sbjct: 201 EDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDII 260

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           S+ +IL A A+L AL + K+ H+ A+ NG   D  + +++I+ Y+K G + DA  VF+ M
Sbjct: 261 SIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVM 320

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
             +D+V+WN ++  Y QSG           +  A  E  +N ++     I  DV+ W+ +
Sbjct: 321 EFKDVVSWNAMVTGYTQSG-----------NFGAAFELFENMRK---ENIPLDVITWSAV 366

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQ----------- 448
           +A YA  G S EA   F QM L+G  PN ++  S++     LG L  G            
Sbjct: 367 IAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCL 426

Query: 449 ------------------MNEAKDMFLQMQSLGV-----------QPNLITWTTLISGLT 479
                              N   DM+ + +S              + N++TWT +I G  
Sbjct: 427 LSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYA 486

Query: 480 QNSCGNEAILFFQEMLET--GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
           Q    N+A+  F EM+     + P+  TI+C L AC  +A+LR G+ IH Y+ RH    P
Sbjct: 487 QYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEP 546

Query: 538 TP--IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           +   +   L+DMY+KCG++  A+ VFD  P +    + +M+SGY MHG   EAL +F  +
Sbjct: 547 SVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKM 606

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           Q+ G  PD I+F  +L ACSH+G+V++GL  F  M  D+ V  S EH+ CV++LL+RCG 
Sbjct: 607 QKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGR 666

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           LD+A + I  MP +P A I  +LLS C   +  ELAEY    L+ ++ +N G+Y  +SN 
Sbjct: 667 LDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNI 726

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           YA + RW +V+++R +MK+ G++K PGCSW+Q  +    F   DRSHP + EIY+ L  L
Sbjct: 727 YANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERL 786

Query: 776 GMHVRLVSKV 785
              ++++  V
Sbjct: 787 IGRIKVMGYV 796


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 243/731 (33%), Positives = 390/731 (53%), Gaps = 83/731 (11%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y KC ++  A  +F ++  +++F+W A++G     G +  AL  + EM+  GVS D++  
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
           P +LKACG +  +  G  +HG  +K G D  VFV +SL+ +Y KC D+  ARK+FD M  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 246 RN-VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
           RN VV+WNS+I  Y  NG+  EA+ +F EM   GV     +  + L A  +   +  G Q
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG- 363
            HA  + +G  LD  + ++++  Y + G + +A V+F  +  +DIVTWN ++  ++Q+G 
Sbjct: 182 IHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGL 241

Query: 364 ---------------------------------------------------QSDVVVASS 372
                                                               S+++V ++
Sbjct: 242 YSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNT 301

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           ++DMYAKC  +    + F+ +  +D++ W T  A YA      +A  L  Q+Q+EG+  +
Sbjct: 302 LIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVD 361

Query: 433 IISWNSVIL---GFLRNGQMNEA---------KDMFLQMQSLGVQ--------------- 465
                S++L   G    G++ E           D  LQ   + V                
Sbjct: 362 ATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFES 421

Query: 466 ---PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
               ++++WT++IS    N   N+A+  F  M ETG++P   T+   LSA   +++L+ G
Sbjct: 422 IECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKG 481

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           + IHG++IR    L   I  +LVDMYA+CG++  A ++F  + ++ L ++ AMIS Y MH
Sbjct: 482 KEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMH 541

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G    A+ LF  ++ + I PD ITF  +L ACSH+GLVNEG      M  ++Q++P  EH
Sbjct: 542 GYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEH 601

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           + C+V+LL R   L+EA +++ +M  +P   +  +LL  C   +  E+ E  +E LL+L+
Sbjct: 602 YTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELD 661

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
            DNPGNYV +SN +AA+GRW +V +VR  MK  GL KNPGCSWI++G ++H F++ D+ H
Sbjct: 662 LDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLH 721

Query: 763 PKTEEIYATLA 773
           P+ ++IY  LA
Sbjct: 722 PECDKIYQKLA 732



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 155/603 (25%), Positives = 277/603 (45%), Gaps = 108/603 (17%)

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MYGKCG + +A  +FD M  R++  WN+M+ GYV NG    A+ ++ EM   GV     +
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM- 344
              +L A   ++ L  G + H +A+  G +    + +S++  Y+K   +  A  +F RM 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 345 VERDIVTWNLLIASYVQSGQS--------------------------------------- 365
           V  D+V+WN +I++Y  +G                                         
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 366 -------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                        DV VA+++V MY +  ++  A  +F ++  +D+V WN++L  +   G
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQM-----------------N 450
              EA   FY +Q   + P+ +S  S+I     LG+L NG+                  N
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGN 300

Query: 451 EAKDMFLQMQ---------SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
              DM+ +            L    +LI+WTT  +G  QN C  +A+   +++   G+  
Sbjct: 301 TLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDV 360

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
             T I   L AC  +  L   + IHGY IR  L  P  +  +++D+Y +CG I  A R+F
Sbjct: 361 DATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPV-LQNTIIDVYGECGIIDYAVRIF 419

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           +    K++  + +MIS Y  +GLA +AL +F ++++ G++PD +T  +IL+A      + 
Sbjct: 420 ESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLK 479

Query: 622 EGLEL--FV---GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
           +G E+  F+   G   +  +  ++      V++ +RCG++++A ++     C  + ++I 
Sbjct: 480 KGKEIHGFIIRKGFILEGSISNTL------VDMYARCGSVEDAYKIF---TCTKNRNLI- 529

Query: 677 SLLSTCVKS------NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
            L +  + +       E  +  ++     ++ PD+   ++AL  A + SG  NE     +
Sbjct: 530 -LWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHI-TFLALLYACSHSGLVNEGKSFLE 587

Query: 731 IMK 733
           IMK
Sbjct: 588 IMK 590



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 136/517 (26%), Positives = 244/517 (47%), Gaps = 61/517 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+ S      EA+ L +EM           +   LQ C     +  G QIHA ILK+G 
Sbjct: 132 ISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGR 191

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               + YV   LV  Y +   +  A+ +F  L  K++ +W +++    + GL  +AL  F
Sbjct: 192 VL--DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFF 249

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            ++Q   + PD   + +++ A G LG++  G+ +H Y +K GFD  + V ++LIDMY KC
Sbjct: 250 YDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKC 309

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             +    + FD M  +++++W +   GY QN    +A+ +  ++ +EG++     + SIL
Sbjct: 310 CCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSIL 369

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A   L+ L + K+ H   +  G+  D VL ++II+ Y + G+++ A  +F  +  +D+V
Sbjct: 370 LACRGLNCLGKIKEIHGYTIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVV 428

Query: 351 TWNLLIASYVQSG-----------------QSDVV------------------------- 368
           +W  +I+ YV +G                 + D V                         
Sbjct: 429 SWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFI 488

Query: 369 ----------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                     +++++VDMYA+C  +++A ++F     R+++LW  +++AY   G    A 
Sbjct: 489 IRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAV 548

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ--PNLITWTTLIS 476
            LF +M+ E I P+ I++ +++     +G +NE K  FL++     Q  P    +T L+ 
Sbjct: 549 ELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKS-FLEIMKCEYQLEPWPEHYTCLVD 607

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            L + +C  EA    + M     +P+       L AC
Sbjct: 608 LLGRRNCLEEAYQIVKSMQN---EPTPEVWCALLGAC 641


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 265/786 (33%), Positives = 404/786 (51%), Gaps = 91/786 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEY-VETKLVVFYAKC----DALDVASRLF 139
           LL+GCV    +  G QIHAR + +G     N   + T+L+  Y       DA+ V S L 
Sbjct: 38  LLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSAL- 96

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM--QEDGVSPDNFVLPNVLKACGALGW 197
            R    +   W  +I      G    A++ +V+M       SPD   LP V+K+C ALG 
Sbjct: 97  PRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGA 156

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           V  GR VH      G    V+V S+LI MY   G L +AR  FDGM  R+ V WN M+ G
Sbjct: 157 VSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDG 216

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           Y++ G    A+R+F  M + G EP   ++   LS  A    L  G Q H++AV  G+E +
Sbjct: 217 YIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQE 276

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------- 363
             + +++++ Y+K   L+DA  +F  +   D+VTWN +I+  VQ+G              
Sbjct: 277 VAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLR 336

Query: 364 --------------------------------------QSDVVVASSIVDMYAKCERIDN 385
                                                   D  + S++VD+Y KC  +  
Sbjct: 337 SGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRT 396

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----- 440
           A+ ++++    DVV+ +T+++ Y   G S +A ++F  +  + I PN ++  SV+     
Sbjct: 397 ARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACAS 456

Query: 441 -----LG------FLRNGQMNEA------KDMFLQMQSLGVQPNL---------ITWTTL 474
                LG       LRN    +        DM+ +   L +   +         +TW ++
Sbjct: 457 ISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSM 516

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           IS  +QN    EA+  F++M   GIK +  TI+ ALSAC  + ++  G+ IHG +I+  +
Sbjct: 517 ISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPI 576

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
                  ++L+DMYAKCGN+  A RVF+  P K    +N++IS Y  HGL  E+++    
Sbjct: 577 KADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHR 636

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           +Q++G  PD +TF  +++AC+HAGLV EGL+LF  M  ++ + P MEHF C+V+L SR G
Sbjct: 637 MQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSG 696

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            LD+A++ I  MP  PDA I G+LL  C      ELA+  S+ L +L+P N G YV +SN
Sbjct: 697 RLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSN 756

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
             A +GRW+ VS+VR +MK+  + K PG SW+ +    H+FVA D+SHP++E+IY +L  
Sbjct: 757 INAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKA 816

Query: 775 LGMHVR 780
           L   +R
Sbjct: 817 LLQELR 822



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 19/195 (9%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILK--- 107
           ISS S+  + +EA+DL  +M     +         L  C     +Y G++IH  I+K   
Sbjct: 517 ISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPI 576

Query: 108 NGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
             D FA     E+ L+  YAKC  +++A R+F  +  KN  SW +II      GL ++++
Sbjct: 577 KADIFA-----ESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESV 631

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA------S 221
                MQE+G  PD+     ++ AC   G V  G  +   + K        +A      +
Sbjct: 632 SFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKE-----YLIAPRMEHFA 686

Query: 222 SLIDMYGKCGDLEEA 236
            ++D+Y + G L++A
Sbjct: 687 CMVDLYSRSGRLDKA 701


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/778 (33%), Positives = 400/778 (51%), Gaps = 91/778 (11%)

Query: 72  CRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG------------------DFFA 113
           C    + P  +  LL+ C   +   T  QIH +I+ +G                  + F 
Sbjct: 37  CIGVDVYPSHFASLLKEC---KSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFI 93

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
               + T +V  Y  C A D A  +  R+       W  +I  + + G  + A+     M
Sbjct: 94  SPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRM 153

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              G  PD+F LP+VLKACG L     G A HG +   GF+  VF+ ++L+ MY +CG L
Sbjct: 154 LRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 213

Query: 234 EEARKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE-PTR-----V 284
           EEA  +FD +  R   +V++WNS++  +V++     A+ +F +MTL   E PT      +
Sbjct: 214 EEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 273

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           S+ +IL A  +L A+ + K+ H  A+ NG   D  +G+++I+ Y+K GL+E+A  VF+ M
Sbjct: 274 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 333

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
             +D+V+WN ++A Y QSG  +           A  E   N ++     I  DVV W  +
Sbjct: 334 EFKDVVSWNAMVAGYSQSGNFE-----------AAFELFKNMRK---ENIPLDVVTWTAV 379

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQ----------- 448
           +A Y+  G S EA  LF QM   G  PN ++  SV+     LG    G            
Sbjct: 380 IAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCL 439

Query: 449 ----------------MNEAKDMFLQMQSLGV-----------QPNLITWTTLISGLTQN 481
                            N   DM+ + +S              + N++TWT +I G  Q 
Sbjct: 440 LTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQY 499

Query: 482 SCGNEAILFFQEMLET--GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
              N+A+  F EM+    G+ P+  TI+C L AC  +A++R G+ IH Y++RH     + 
Sbjct: 500 GDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSA 559

Query: 540 --IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             +   L+DMY+KCG++  A+ VFD    K    + +M++GY MHG   EAL +F  +++
Sbjct: 560 YFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRK 619

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
            G  PD ITF  +L ACSH G+V++GL  F  M +D+ + P  EH+ C ++LL+R G LD
Sbjct: 620 AGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLD 679

Query: 658 EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
           +A R +  MP +P A +  +LLS C   +  ELAE+    L+++  +N G+Y  +SN YA
Sbjct: 680 KAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYA 739

Query: 718 ASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            +GRW +V+++R +MK+ G++K PGCSW+Q  +    F   DRSHP + +IYA L  L
Sbjct: 740 TAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 797


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/778 (33%), Positives = 400/778 (51%), Gaps = 91/778 (11%)

Query: 72  CRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG------------------DFFA 113
           C    + P  +  LL+ C   +   T  QIH +I+ +G                  + F 
Sbjct: 30  CIGVDVYPSHFASLLKEC---KSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFI 86

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
               + T +V  Y  C A D A  +  R+       W  +I  + + G  + A+     M
Sbjct: 87  SPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRM 146

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              G  PD+F LP+VLKACG L     G A HG +   GF+  VF+ ++L+ MY +CG L
Sbjct: 147 LRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 206

Query: 234 EEARKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE-PTR-----V 284
           EEA  +FD +  R   +V++WNS++  +V++     A+ +F +MTL   E PT      +
Sbjct: 207 EEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 266

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           S+ +IL A  +L A+ + K+ H  A+ NG   D  +G+++I+ Y+K GL+E+A  VF+ M
Sbjct: 267 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 326

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
             +D+V+WN ++A Y QSG  +           A  E   N ++     I  DVV W  +
Sbjct: 327 EFKDVVSWNAMVAGYSQSGNFE-----------AAFELFKNMRK---ENIPLDVVTWTAV 372

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQ----------- 448
           +A Y+  G S EA  LF QM   G  PN ++  SV+     LG    G            
Sbjct: 373 IAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCL 432

Query: 449 ----------------MNEAKDMFLQMQSLGV-----------QPNLITWTTLISGLTQN 481
                            N   DM+ + +S              + N++TWT +I G  Q 
Sbjct: 433 LTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQY 492

Query: 482 SCGNEAILFFQEMLET--GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
              N+A+  F EM+    G+ P+  TI+C L AC  +A++R G+ IH Y++RH     + 
Sbjct: 493 GDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSA 552

Query: 540 --IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             +   L+DMY+KCG++  A+ VFD    K    + +M++GY MHG   EAL +F  +++
Sbjct: 553 YFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRK 612

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
            G  PD ITF  +L ACSH G+V++GL  F  M +D+ + P  EH+ C ++LL+R G LD
Sbjct: 613 AGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLD 672

Query: 658 EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
           +A R +  MP +P A +  +LLS C   +  ELAE+    L+++  +N G+Y  +SN YA
Sbjct: 673 KAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYA 732

Query: 718 ASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            +GRW +V+++R +MK+ G++K PGCSW+Q  +    F   DRSHP + +IYA L  L
Sbjct: 733 TAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 790


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 251/808 (31%), Positives = 407/808 (50%), Gaps = 98/808 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I + ++ KQ  EA+++   M  +  +     +  +L+ C    ++  G   H  I + G 
Sbjct: 101 IRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRG- 159

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE-----K 165
              R+ ++   LV  Y+K   L  A  +F ++  ++V +W A+I      GLS+     +
Sbjct: 160 -LERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIA-----GLSQSEDPCE 213

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  F  MQ  GV P +  L N+      L  +   R++HGYV +  F   V  ++ LID
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLID 271

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y KCGD++ AR+VFD M+ ++ V+W +M+ GY  NG   E + +F +M L  V   +VS
Sbjct: 272 LYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVS 331

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
             S   A+A    L++GK+ H  A+   ++ D ++ + ++  Y+K G  E A+ +F  + 
Sbjct: 332 AVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQ 391

Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
            RD+V W+ +IA+ VQ+G                                          
Sbjct: 392 GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS 451

Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                      SD+   +++V MYAKC     A   FN +  RD+V WN+L+  YA +G 
Sbjct: 452 IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVI---------------------LGFLRNGQMNEA 452
              A  +FY+++L  I+P+  +   V+                     LGF  +  +  A
Sbjct: 512 PYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNA 571

Query: 453 K-DMFLQMQSLGVQPNL----------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
             DM+ +  SL     L          +TW  +I+   QN    EAI  F +M      P
Sbjct: 572 LIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHP 631

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
           ++ T    L A   +A+ R G A H  +I+      T +  SL+DMYAKCG +  ++++F
Sbjct: 632 NSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLF 691

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           +    K+   +NAM+SGYA+HG    A+ALF  +Q+  +  DS++F ++L+AC HAGLV 
Sbjct: 692 NEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVE 751

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           EG ++F  M   + +KP +EH+ C+V+LL R G  DE L  I  MP +PDA + G+LL +
Sbjct: 752 EGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGS 811

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C   +  +L E   +HL++LEP NP ++V LS+ YA SGRW +  + R  M + GL+K P
Sbjct: 812 CRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTP 871

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIY 769
           GCSW+++  ++H F   D+SHP+ E ++
Sbjct: 872 GCSWVELKNKVHAFRVGDKSHPQLESMH 899



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 184/679 (27%), Positives = 313/679 (46%), Gaps = 113/679 (16%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  LL  C +   +    QIHA+I+ +G    ++ +  T L+  Y+     D+A  +F  
Sbjct: 35  YPRLLSSCKHLNPLL---QIHAQIIVSG---FKHHHSITHLINLYSLFHKCDLARSVFDS 88

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC-GALGWVGF 200
               +   W ++I    R     +AL  +  M E G+ PD +    VLKAC GAL  +  
Sbjct: 89  TPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALN-LQE 147

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G   HG + + G +  VF+ + L+DMY K GDL+ AR+VFD M  R+VVAWN+MI G  Q
Sbjct: 148 GVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQ 207

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +    EA+  F  M L GVEP+ VS+ ++      L  ++  +  H    +   +  + +
Sbjct: 208 SEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIH--GYVFRRDFSSAV 265

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG----------------- 363
            + +I+ YSK G ++ A  VF +MV++D V+W  ++A Y  +G                 
Sbjct: 266 SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV 325

Query: 364 -----------------------------------QSDVVVASSIVDMYAKCERIDNAKQ 388
                                               SD++VA+ ++ MYAKC   + AKQ
Sbjct: 326 RINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQ 385

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGF 443
           +F  +  RD+V W+ ++AA    G   EA  LF +MQ + + PN ++  S++     L  
Sbjct: 386 LFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSL 445

Query: 444 LRNGQ------------------------------MNEAKDMFLQMQSLGVQPNLITWTT 473
           L+ G+                                 A   F +M S     +++TW +
Sbjct: 446 LKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSS----RDIVTWNS 501

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           LI+G  Q      AI  F ++  + I P   T+   + AC  +  L  G  IHG +++  
Sbjct: 502 LINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLG 561

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVEALALF 592
                 +  +L+DMYAKCG++  A+ +F+ +  +K+   +N +I+ Y  +G A EA++ F
Sbjct: 562 FESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSF 621

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVV 647
             ++ +   P+S+TF ++L A ++     EG+        +G  S+  V  S+      +
Sbjct: 622 HQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSL------I 675

Query: 648 NLLSRCGNLDEALRVILTM 666
           ++ ++CG LD + ++   M
Sbjct: 676 DMYAKCGQLDYSEKLFNEM 694



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 131/316 (41%), Gaps = 10/316 (3%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++  +    +EA+    +M+  NF      +  +L    Y      G   HA I++ G 
Sbjct: 605 IAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMG- 663

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  N  V   L+  YAKC  LD + +LF  +  K+  SW A++      G  ++A+  F
Sbjct: 664 -FLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALF 722

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-HGYVLKVGFDGCVFVASSLIDMYGK 229
             MQE  V  D+    +VL AC   G V  GR + H    K      +   + ++D+ G+
Sbjct: 723 SLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGR 782

Query: 230 CGDLEEARKVFDGM-IARNVVAWNSMIVG-YVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            G  +E       M +  +   W +++    + + +    + + + + LE   P    V 
Sbjct: 783 AGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVL 842

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S + A +   A D GK   A + +N + L    G S +   +KV      +    ++ E 
Sbjct: 843 SSIYAQSGRWA-DAGK---ARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQL-ES 897

Query: 348 DIVTWNLLIASYVQSG 363
             + WN L+    + G
Sbjct: 898 MHLLWNTLLEKMEKIG 913



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 1/127 (0%)

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
           +T L+++Y+       A+ VFD +P+    ++N+MI  Y       EAL ++  + +KG+
Sbjct: 66  ITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGL 125

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
           +PD  TFT +L AC+ A  + EG+  F G      ++  +     +V++ S+ G+L  A 
Sbjct: 126 EPDKYTFTFVLKACTGALNLQEGV-WFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAR 184

Query: 661 RVILTMP 667
            V   MP
Sbjct: 185 EVFDKMP 191


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/773 (31%), Positives = 412/773 (53%), Gaps = 92/773 (11%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+Q+H+  +K G  F  + +V+TKL+  Y+   + + A  +F ++ +KN+ SW A++ L+
Sbjct: 50  GKQLHSHSIKTG--FYNHNFVQTKLLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRLH 107

Query: 158 CRVGLSEKALIGFVEMQEDGVSP--DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
             +GL  K  + F E   DG+    D FV P VL  C  LG +  GR VHG VLK GF  
Sbjct: 108 LNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGFVT 167

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL------------ 263
            V+V ++LIDMYGKCG L+EA+KV +GM  ++ V+WNS+I   V NG+            
Sbjct: 168 NVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENML 227

Query: 264 -----------------------NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
                                  + E++ +F  M   GV P   ++ S+L A + +  L 
Sbjct: 228 LSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLF 287

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            GK+ H   V + +  +  + ++++  Y + G ++ A  +FS+   +   ++N +I  Y+
Sbjct: 288 VGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYL 347

Query: 361 QSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVV 399
           ++G                 + D +  + ++  +      D+A  +F  +++     D  
Sbjct: 348 ENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSF 407

Query: 400 LWNTLLAAYADL-----GR--------SGEASRLFY-----------------QMQLEGI 429
              ++L  +AD+     G+         G  S  F                  QM  + I
Sbjct: 408 TLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEI 467

Query: 430 SPNIIS-WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
           S    S WN++I G+ R  Q+ + +++  +M+S G +PN+ TW ++++GL +N   + A+
Sbjct: 468 SERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAM 527

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
             F EM  + ++P   T+   L+AC+ +A++  G+ +H Y IR        I  +LVDMY
Sbjct: 528 QLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMY 587

Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
           AKCG+I    +V++   +  L  +NAM++ YAMHG   E + +F+ +    + PD +TF 
Sbjct: 588 AKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFL 647

Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
           ++L++C HAG +  G E F  +   + + P+++H+ C+V+LLSR G LDEA ++I  MP 
Sbjct: 648 SVLSSCVHAGSIKIGYECFY-LMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPM 706

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
           + D+    +LL  C    E  L E  +E L++LEP N GNYV L+N YA++GRW+++++ 
Sbjct: 707 EADSVTWSALLGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKT 766

Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
           R++M +KG++K+PGCSWI+  + +H+F+A D+SH + EEIY  L  L   +R+
Sbjct: 767 RELMNDKGMQKSPGCSWIEDRDGVHIFLASDKSHQRVEEIYFMLDNLTKFIRI 819



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 233/491 (47%), Gaps = 49/491 (9%)

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
           T  + ++IL +S   ++L  GKQ H+ ++  G    N + + ++  YS     EDA  +F
Sbjct: 33  TSTTYSTILQSS---NSLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMF 89

Query: 342 SRMVERDIVTWNLLIASYVQSG-------------------QSDVVVASSIVDMYAKCER 382
            +M  +++ +W  ++  ++  G                   + D  V   ++++      
Sbjct: 90  DKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGD 149

Query: 383 IDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS-PNIISWN 437
           ++  +QV   ++    + +V + N L+  Y   G   EA ++     LEG++  + +SWN
Sbjct: 150 LELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKV-----LEGMTQKDCVSWN 204

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           S+I   + NG + EA D+   M    ++PN++TW+ +I G + N+   E++  F  M+  
Sbjct: 205 SIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGA 264

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           G+ P   T+   L AC+ +  L  G+ +HGY++RH+L     +  +LV MY +CG++  A
Sbjct: 265 GVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSA 324

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
            ++F     K    YN MI GY  +G   +A  LF  ++Q+G++ D I++  +++     
Sbjct: 325 FKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDN 384

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS-----RCGNLDEALRVILTMPCDPDA 672
            + ++ L LF  +  +  ++P     G ++   +     R G   E   + +      ++
Sbjct: 385 FMFDDALMLFRDLLME-GIEPDSFTLGSILTGFADMTCIRQGK--EIHSIAIVKGLQSNS 441

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI- 731
            + G+L+    K N+   A+   +   ++   +   + AL + YA   R N++ ++R++ 
Sbjct: 442 FVGGALVEMYCKCNDIIAAQMAFD---EISERDTSTWNALISGYA---RCNQIGKIRELV 495

Query: 732 --MKEKGLRKN 740
             MK  G   N
Sbjct: 496 ERMKSDGFEPN 506



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 112/239 (46%), Gaps = 31/239 (12%)

Query: 34  RESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY--GELLQGCVY 91
           R   + +E    ++   ++ L + KQ   A+ L  EM+  + +  P+IY  G +L  C  
Sbjct: 497 RMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLR--PDIYTVGIILAACSK 554

Query: 92  KRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWA 151
              ++ G+Q+HA  ++ G  +  + ++   LV  YAKC ++    +++ ++   N+    
Sbjct: 555 LATIHRGKQVHAYSIRAG--YDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNPNLVCHN 612

Query: 152 AIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV 211
           A++      G  E+ ++ F  M +  V PD+    +VL +C           VH   +K+
Sbjct: 613 AMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSC-----------VHAGSIKI 661

Query: 212 GFDGCVFVASS------------LIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVG 257
           G++ C ++  +            ++D+  + G L+EA ++   M +  + V W++++ G
Sbjct: 662 GYE-CFYLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGG 719


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/809 (30%), Positives = 419/809 (51%), Gaps = 96/809 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +   S++ Q    ++L+ +    NF      Y +LL  C   + +  G QIHA I K+G 
Sbjct: 31  VPQFSQDPQTTAILNLIDK---GNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG- 86

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
             + +  +   L+  Y+KC     A +L       ++ SW+A+I    + GL   AL+ F
Sbjct: 87  -LSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAF 145

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EM   GV  + F   +VLKAC  +  +  G+ VHG V+  GF+G VFVA++L+ MY KC
Sbjct: 146 HEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKC 205

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
            +  +++++FD +  RNVV+WN++   YVQ     EA+ +FYEM L G++P   S++S++
Sbjct: 206 DEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           +A   L     GK  H   +  G + D    +++++ Y+KVG L DA  VF ++ + DIV
Sbjct: 266 NACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIV 325

Query: 351 TWNLLIASYV----------------QSG------------------------------- 363
           +WN +IA  V                +SG                               
Sbjct: 326 SWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSL 385

Query: 364 -----QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                +SD+ V+  +VDMY+KC+ +++A+  FN +  +D++ WN +++ Y+      EA 
Sbjct: 386 MKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEAL 445

Query: 419 RLFYQMQLEGISPN-----------------------------------IISWNSVILGF 443
            LF +M  EGI  N                                   I   NS+I  +
Sbjct: 446 SLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSY 505

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            +   + +A+ +F +  ++G   +L+++T++I+   Q   G EA+  F EM +  +KP  
Sbjct: 506 GKCSHVEDAERIFEEC-TIG---DLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDR 561

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
              +  L+AC ++++   G+ +H +++++   L      SLV+MYAKCG+I  A R F  
Sbjct: 562 FVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSE 621

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
              + +  ++AMI G A HG   +AL LF  + ++G+ P+ IT  ++L AC+HAGLV E 
Sbjct: 622 LTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEA 681

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
              F  M      KP  EH+ C+++LL R G ++EA+ ++  MP + +A + G+LL    
Sbjct: 682 KLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAAR 741

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
              + EL    +E L  LEP+  G +V L+N YA++G+W  V++VR +M++  ++K PG 
Sbjct: 742 IHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGM 801

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATL 772
           SWI++ ++++ F+  DRSH +++EIYA L
Sbjct: 802 SWIEVKDKVYTFLVGDRSHYRSQEIYAKL 830



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 14/217 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHA 103
           S+   I++ ++  Q  EA+ L  EM+  + ++ P+ +    LL  C        G+Q+H 
Sbjct: 528 SFTSMITAYAQYGQGEEALKLFLEMQ--DMELKPDRFVCSSLLNACANLSAFEQGKQLHV 585

Query: 104 RILKNG---DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
            ILK G   D FA N      LV  YAKC ++D A R F  L  + + SW+A+IG   + 
Sbjct: 586 HILKYGFVLDIFAGN-----SLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQH 640

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFV 219
           G   +AL  F +M ++GVSP++  L +VL AC   G V   +     + ++ GF      
Sbjct: 641 GHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEH 700

Query: 220 ASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
            + +ID+ G+ G + EA ++ + M    N   W +++
Sbjct: 701 YACMIDLLGRAGKINEAVELVNKMPFEANASVWGALL 737


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 250/808 (30%), Positives = 406/808 (50%), Gaps = 98/808 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I + ++ KQ  EA+++   M  +  +     +  +L+ C    ++  G   H  I + G 
Sbjct: 101 IRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRG- 159

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE-----K 165
              R+ ++   LV  Y+K   L  A  +F ++  ++V +W A+I      GLS+     +
Sbjct: 160 -LERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIA-----GLSQSEDPCE 213

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  F  MQ  GV P +  L N+      L  +   R++HGYV +  F   V  ++ LID
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLID 271

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y KCGD++ AR+VFD M+ ++ V+W +M+ GY  NG   E + +F +M L  V   +VS
Sbjct: 272 LYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVS 331

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
             S   A+A    L++GK+ H  A+   ++ D ++ + ++  Y+K G  E A+ +F  + 
Sbjct: 332 AVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQ 391

Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
            RD+V W+ +IA+ VQ+G                                          
Sbjct: 392 GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS 451

Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                      SD+   +++V MYAKC     A   FN +  RD+V WN+L+  YA +G 
Sbjct: 452 IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVI---------------------LGFLRNGQMNEA 452
              A  +FY+++L  I+P+  +   V+                     LGF  +  +  A
Sbjct: 512 PYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNA 571

Query: 453 K-DMFLQMQSLGVQPNL----------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
             DM+ +  SL     L          +TW  +I+   QN    EAI  F +M      P
Sbjct: 572 LIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHP 631

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
           ++ T    L A   +A+ R G A H  +I+      T +  SL+DMYAKCG +  ++++F
Sbjct: 632 NSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLF 691

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           +    K+   +NAM+SGYA+HG    A+ALF  +Q+  +  DS++F ++L+AC H GLV 
Sbjct: 692 NEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVE 751

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           EG ++F  M   + +KP +EH+ C+V+LL R G  DE L  I  MP +PDA + G+LL +
Sbjct: 752 EGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGS 811

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C   +  +L E   +HL++LEP NP ++V LS+ YA SGRW +  + R  M + GL+K P
Sbjct: 812 CRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTP 871

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIY 769
           GCSW+++  ++H F   D+SHP+ E ++
Sbjct: 872 GCSWVELKNKVHAFRVGDKSHPQLESMH 899



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 182/669 (27%), Positives = 308/669 (46%), Gaps = 113/669 (16%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  LL  C +   +    QIHA+I+ +G    ++ +  T L+  Y+     D+A  +F  
Sbjct: 35  YPRLLSSCKHLNPLL---QIHAQIIVSG---FKHHHSITHLINLYSLFHKCDLARSVFDS 88

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC-GALGWVGF 200
               +   W ++I    R     +AL  +  M E G+ PD +    VLKAC GAL  +  
Sbjct: 89  TPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALN-LQE 147

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G   HG + + G +  VF+ + L+DMY K GDL+ AR+VFD M  R+VVAWN+MI G  Q
Sbjct: 148 GVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQ 207

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +    EA+  F  M L GVEP+ VS+ ++      L  ++  +  H    +   +  + +
Sbjct: 208 SEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIH--GYVFRRDFSSAV 265

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG----------------- 363
            + +I+ YSK G ++ A  VF +MV++D V+W  ++A Y  +G                 
Sbjct: 266 SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV 325

Query: 364 -----------------------------------QSDVVVASSIVDMYAKCERIDNAKQ 388
                                               SD++VA+ ++ MYAKC   + AKQ
Sbjct: 326 RINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQ 385

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGF 443
           +F  +  RD+V W+ ++AA    G   EA  LF +MQ + + PN ++  S++     L  
Sbjct: 386 LFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSL 445

Query: 444 LRNGQ------------------------------MNEAKDMFLQMQSLGVQPNLITWTT 473
           L+ G+                                 A   F +M S     +++TW +
Sbjct: 446 LKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSS----RDIVTWNS 501

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           LI+G  Q      AI  F ++  + I P   T+   + AC  +  L  G  IHG +++  
Sbjct: 502 LINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLG 561

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVEALALF 592
                 +  +L+DMYAKCG++  A+ +F+ +  +K+   +N +I+ Y  +G A EA++ F
Sbjct: 562 FESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSF 621

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVV 647
             ++ +   P+S+TF ++L A ++     EG+        +G  S+  V  S+      +
Sbjct: 622 HQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSL------I 675

Query: 648 NLLSRCGNL 656
           ++ ++CG L
Sbjct: 676 DMYAKCGQL 684



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 113/215 (52%), Gaps = 4/215 (1%)

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
           P+ I W ++I   T++   NEA+  +  M+E G++P   T T  L ACT   +L+ G   
Sbjct: 92  PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWF 151

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           HG + R  L     I   LVDMY+K G++ +A+ VFD  P +++  +NAMI+G +     
Sbjct: 152 HGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDP 211

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            EA+  F+++Q  G++P S++  N+        L N  L   +  +   +   S    G 
Sbjct: 212 CEAVDFFRSMQLVGVEPSSVSLLNLFPGI--CKLSNIELCRSIHGYVFRRDFSSAVSNG- 268

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
           +++L S+CG++D A RV   M  D D    G++++
Sbjct: 269 LIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMA 302



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 130/316 (41%), Gaps = 10/316 (3%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++  +    +EA+    +M+  NF      +  +L    Y      G   HA I++ G 
Sbjct: 605 IAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMG- 663

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  N  V   L+  YAKC  L  + +LF  +  K+  SW A++      G  ++A+  F
Sbjct: 664 -FLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALF 722

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-HGYVLKVGFDGCVFVASSLIDMYGK 229
             MQE  V  D+    +VL AC   G V  GR + H    K      +   + ++D+ G+
Sbjct: 723 SLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGR 782

Query: 230 CGDLEEARKVFDGM-IARNVVAWNSMIVG-YVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            G  +E       M +  +   W +++    + + +    + + + + LE   P    V 
Sbjct: 783 AGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVL 842

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S + A +   A D GK   A + +N + L    G S +   +KV      +    ++ E 
Sbjct: 843 SSIYAQSGRWA-DAGK---ARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQL-ES 897

Query: 348 DIVTWNLLIASYVQSG 363
             + WN L+    + G
Sbjct: 898 MHLLWNTLLEKMEKIG 913



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 1/127 (0%)

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
           +T L+++Y+       A+ VFD +P+    ++N+MI  Y       EAL ++  + +KG+
Sbjct: 66  ITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGL 125

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
           +PD  TFT +L AC+ A  + EG+  F G      ++  +     +V++ S+ G+L  A 
Sbjct: 126 EPDKYTFTFVLKACTGALNLQEGV-WFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAR 184

Query: 661 RVILTMP 667
            V   MP
Sbjct: 185 EVFDKMP 191


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/806 (30%), Positives = 400/806 (49%), Gaps = 112/806 (13%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNG------------DFFARNEYVETKLVVF---- 125
           +  + Q C  +  +  G+Q HAR++  G              + +  Y++    VF    
Sbjct: 52  FSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMY 111

Query: 126 -------------YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
                        YA C  +D+A + F  +  ++V SW ++I    + G   K++  F+E
Sbjct: 112 LRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLE 171

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M   GV  D   L  VLKACGAL     G  VHG V+K GFD  V   S+L+ MY KC  
Sbjct: 172 MGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKR 231

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L+++  VF  +  +N V+W++MI G VQN  N E + +F EM   GV  ++    S+  +
Sbjct: 232 LDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRS 291

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A L AL  GK+ H+ A+ +    D ++G++ ++ Y+K G + DA+ V S M +  + ++
Sbjct: 292 CAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSY 351

Query: 353 NLLIASYVQSGQ------------------------------------------------ 364
           N +I  Y +S +                                                
Sbjct: 352 NAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVK 411

Query: 365 ----SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
               S++ VA++I+DMY KC+ +  A  +F+ +  RD V WN ++AA    G   E    
Sbjct: 412 SISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAH 471

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV---------------- 464
           F  M    + P+  ++ SV+        +N   ++  ++   G+                
Sbjct: 472 FASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCK 531

Query: 465 ---------------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
                          Q  +++W  +ISG +      +A  FF  MLE G+ P   T    
Sbjct: 532 CGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAV 591

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L  C ++A++  G+ IH  +I+ +L     I ++LVDMY+KCGN+  ++ +F+ +P+++ 
Sbjct: 592 LDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDF 651

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +NAM+ GYA HGL  EAL LF+++Q   + P+  TF ++L AC+H GLV++GL  F  
Sbjct: 652 VTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDV 711

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M S++ + P  EH+ C+V++L R G +DEAL ++  MP + DA I  +LLS C      E
Sbjct: 712 MLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVE 771

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           +AE  +  LLQL+P +    V LSN YA +G W  VS++R +M+   L+K PGCSWI++ 
Sbjct: 772 VAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELK 831

Query: 750 EELHVFVACDRSHPKTEEIYATLALL 775
           +E+H F+  D+ HP+ EEIY  L +L
Sbjct: 832 DEVHAFLVGDKGHPRDEEIYEKLGVL 857



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 225/486 (46%), Gaps = 55/486 (11%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           E ++L  EM+     +   IY  L + C     +  G+++H+  LK+   F  +  V T 
Sbjct: 265 EGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSA--FGSDIIVGTA 322

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
            +  YAKC  +  A ++   +   ++ S+ AII    R     +AL  F  + + G+  D
Sbjct: 323 TLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFD 382

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
              L   L AC ++     GR VHG  +K      + VA++++DMYGKC  L EA  +FD
Sbjct: 383 EITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFD 442

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M  R+ V+WN++I    QNG  EE +  F  M    +EP   +  S+L A A   AL+ 
Sbjct: 443 MMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNT 502

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV- 360
           G + H   + +GM  D+ +G+++++ Y K G++E A+ +  R  ++ +V+WN +I+ +  
Sbjct: 503 GMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSL 562

Query: 361 ---------------------------------------------------QSGQSDVVV 369
                                                              Q  QSDV +
Sbjct: 563 LQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYI 622

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
            S++VDMY+KC  + +++ +F     RD V WN +L  YA  G   EA +LF  MQL  +
Sbjct: 623 CSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNV 682

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
            PN  ++ SV+      G +++    F + +   G+ P    ++ ++  L ++   +EA+
Sbjct: 683 KPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEAL 742

Query: 489 LFFQEM 494
              Q+M
Sbjct: 743 NLVQKM 748


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/720 (34%), Positives = 383/720 (53%), Gaps = 71/720 (9%)

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED 176
           ++ +  + F +   AL V  RL        VF W  +I  +  +G  E  L  +  MQ  
Sbjct: 82  HIISMYLTFNSPAKALSVLRRL--HPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRL 139

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G  PD++  P VLKACG +     G +VH  V   GF+  VFV + L+ MYG+CG  E A
Sbjct: 140 GWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENA 199

Query: 237 RKVFDGMIARNV---VAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSA 292
           R+VFD M  R V   V+WNS++  Y+Q G +  A+++F  MT + G+ P  VS+ ++L A
Sbjct: 200 RQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPA 259

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A++ A   GKQ H  A+ +G+  D  +G+++++ Y+K G++E+A  VF RM  +D+V+W
Sbjct: 260 CASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSW 319

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLAAY 408
           N ++                    Y++  R D+A  +F  I    I  +VV W+ ++A Y
Sbjct: 320 NAMVTG------------------YSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGY 361

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK--------------- 453
           A  G   EA  +F QM L G  PN+++  S++ G    G +   K               
Sbjct: 362 AQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDE 421

Query: 454 --------------DMFLQMQSLG--------VQP---NLITWTTLISGLTQNSCGNEAI 488
                         DM+ + +S          + P   +++TWT LI G  Q+   NEA+
Sbjct: 422 NDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEAL 481

Query: 489 LFFQEMLETG--IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS-LV 545
             F +ML+    + P+  TI+CAL AC  + +LR GR IH Y++R+        V + L+
Sbjct: 482 ELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLI 541

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           DMY+K G++  A+ VFD    +    + ++++GY MHG   EAL +F  +Q+  + PD +
Sbjct: 542 DMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGV 601

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           TF  +L ACSH+G+V++G+  F GM  D  V P  EH+ C+V+LLSR G LDEA+ +I  
Sbjct: 602 TFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRG 661

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MP  P   +  +LLS C      EL EY +  LL+LE  N G+Y  LSN YA +  W +V
Sbjct: 662 MPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDV 721

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           +++R +MK  G++K PGCSW+Q  +    F A D SHP +++IY  L  L   ++ +  V
Sbjct: 722 ARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYV 781



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 4/196 (2%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKN 108
           I   ++  +  EA++L ++M   +  + P  +     L  C     +  G+QIHA +L+N
Sbjct: 468 IGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 527

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
             F +   +V   L+  Y+K   +D A  +F  +  +N  SW +++      G  E+AL 
Sbjct: 528 -RFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQ 586

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDGCVFVASSLIDMY 227
            F EMQ+  + PD      VL AC   G V  G    +G     G        + ++D+ 
Sbjct: 587 IFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLL 646

Query: 228 GKCGDLEEARKVFDGM 243
            + G L+EA ++  GM
Sbjct: 647 SRAGRLDEAMELIRGM 662


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/776 (32%), Positives = 398/776 (51%), Gaps = 86/776 (11%)

Query: 77  IGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVAS 136
           + P++   +LQ C     +  G+Q HA++L NG     N  + TKL+  Y  C A   A 
Sbjct: 45  LAPQLV-SILQTCTDPSGLSQGRQAHAQMLVNG--IGYNGILGTKLLGMYVLCGAFLDAK 101

Query: 137 RLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
            +F +LR+     W  +I     +G  + AL+ + +M   G  PD +  P V+KACG L 
Sbjct: 102 NIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLN 161

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
            V  GR VH  +  +GF+  VFV SSLI  Y + G + +AR +FD M +++ V WN M+ 
Sbjct: 162 SVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLN 221

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           GYV+NG  + A  VF EM      P  V+   +LS  A+   ++ G Q H + V +G+E+
Sbjct: 222 GYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEM 281

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV---------------- 360
           D+ + ++++  Y+K G L DA  +F  M + D+VTWN +I+ YV                
Sbjct: 282 DSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMI 341

Query: 361 -----------------------------------QSGQS-DVVVASSIVDMYAKCERID 384
                                              ++G S DV + S+++D+Y KC  ++
Sbjct: 342 SARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVE 401

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI---- 440
            A+++F+     D+V+   +++ Y   G +  A  +F  +  E +  N ++  SV+    
Sbjct: 402 MARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACA 461

Query: 441 ------LG------FLRNGQMNEA------KDMFLQMQSLGV---------QPNLITWTT 473
                 LG       L+NG            DM+ +   L +           + + W +
Sbjct: 462 GLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNS 521

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +I+  +QN    EAI  F++M   G K    +I+ ALSAC ++ +L  G+ IH +++R  
Sbjct: 522 MITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGA 581

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
                   ++L+DMY+KCGN+  A RVFD    K    +N++I+ Y  HG   ++L LF 
Sbjct: 582 FRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFH 641

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            +   GI PD +TF  I++AC HAG V+EG+  F  M  +  +   MEH+ C+V+L  R 
Sbjct: 642 GMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRA 701

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G L+EA  +I +MP  PDA + G+LL  C      ELAE  S +L  L+P N G YV LS
Sbjct: 702 GRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLS 761

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           N +A +G+W  V ++R +MKE+G++K PGCSWI +    H+FVA DRSHP++ +IY
Sbjct: 762 NVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIY 817



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 146/541 (26%), Positives = 265/541 (48%), Gaps = 69/541 (12%)

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL--KVGFDGCVFVASSLIDMYGKCG 231
            +D ++P    L ++L+ C     +  GR  H  +L   +G++G   + + L+ MY  CG
Sbjct: 41  NDDSLAPQ---LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNG--ILGTKLLGMYVLCG 95

Query: 232 DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
              +A+ +F  +       WN MI G+   G  + A+  +++M   G  P + +   ++ 
Sbjct: 96  AFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIK 155

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           A   L+++  G+  H      G ELD  +GSS+I FYS+ G + DA  +F RM  +D V 
Sbjct: 156 ACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVL 215

Query: 352 WNLLIASYVQSGQSD-----------------VVVASSIVDMYAKCERIDNAKQ----VF 390
           WN+++  YV++G  D                  V  + ++ + A    I+   Q    V 
Sbjct: 216 WNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVV 275

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
           +S +  D  + NTLLA YA  G   +A RLF  M       ++++WN +I G+++NG M+
Sbjct: 276 SSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMP----KTDLVTWNGMISGYVQNGFMD 331

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
           EA  +F +M S  ++P+ IT+++ +  L++                              
Sbjct: 332 EASCLFHEMISARMKPDSITFSSFLPLLSEG----------------------------- 362

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
                 A+LR G+ IH Y+IR+ + L   + ++L+D+Y KC ++  A+++FD     ++ 
Sbjct: 363 ------ATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIV 416

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
           V  AMISGY ++G+   AL +F+ L Q+ +  +S+T  ++L AC+    +  G EL  G 
Sbjct: 417 VCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELH-GH 475

Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETEL 690
              +    S      ++++ ++CG LD A +  + +  D DA    S++++C ++ + E 
Sbjct: 476 ILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-DKDAVCWNSMITSCSQNGKPEE 534

Query: 691 A 691
           A
Sbjct: 535 A 535


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/803 (30%), Positives = 418/803 (52%), Gaps = 95/803 (11%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
            A+D++  ++ +  ++    Y ++L+ C+  +D+  G+++H  I+++      ++Y    
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVL--DQYTVNA 181

Query: 122 LVVFYAKCDALDVASRLFCRLR--VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           L+  Y +C +++ A +++ +L    + V SW A++    + G  E+AL    EMQ+ G++
Sbjct: 182 LINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA 241

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
                   +L +C +   +  GR +H   +K      V VA+ +++MY KCG + EAR+V
Sbjct: 242 LGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREV 301

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD M  ++VV+W  +I GY   G +E A  +F +M  EGV P R++  ++L+A +   AL
Sbjct: 302 FDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAAL 361

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI---------- 349
             GK  H+  +  G E D  +G++++  Y+K G  +D   VF ++V RD+          
Sbjct: 362 KWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGL 421

Query: 350 -------------------------VTWNLLI----------------ASYVQSG-QSDV 367
                                    +T+ +L+                +  V+ G   D+
Sbjct: 422 AEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDI 481

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
            V ++++ MYA+C  I +A+ +FN ++ +D++ W  ++   A  G   EA  +F  MQ  
Sbjct: 482 SVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQA 541

Query: 428 GISPNIISWNSVI--------LGFLRN---------------------------GQMNEA 452
           G+ PN +++ S++        L + R                            G + +A
Sbjct: 542 GLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDA 601

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           + +F +M     Q +++ +  +I G   ++ G EA+  F  + E G+KP   T    L+A
Sbjct: 602 RQVFDRM----TQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNA 657

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C +  SL   + IH  +++      T +  +LV  YAKCG+   A  VFD    + +  +
Sbjct: 658 CANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISW 717

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
           NA+I G A HG   + L LF+ ++ +GI PD +TF ++L+ACSHAGL+ EG   F  M  
Sbjct: 718 NAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSR 777

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
           D  + P++EH+GC+V+LL R G LDE   +I TMP   +  I G+LL  C       +AE
Sbjct: 778 DFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAE 837

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
             +E  L+L+PDN   YVALS+ YAA+G W+  +++R +M+++G+ K PG SWI++G++L
Sbjct: 838 RAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKL 897

Query: 753 HVFVACDRSHPKTEEIYATLALL 775
           H FVA DRSHP++E+IYA L  L
Sbjct: 898 HYFVAEDRSHPESEKIYAELDKL 920



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 169/631 (26%), Positives = 298/631 (47%), Gaps = 91/631 (14%)

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           I EA+ LL EM+     +G      LL  C     +  G++IH   +K    F  N  V 
Sbjct: 225 IEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVN--VA 282

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
             ++  YAKC ++  A  +F ++  K+V SW  IIG     G SE A   F +MQ++GV 
Sbjct: 283 NCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVV 342

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           P+     NVL A      + +G+ VH ++L  G +  + V ++L+ MY KCG  ++ R+V
Sbjct: 343 PNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQV 402

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F+ ++ R+++AWN+MI G  + G  EEA  ++++M  EG+ P +++   +L+A  N  AL
Sbjct: 403 FEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTAL 462

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
             G++ H+  V +G   D  + +++I+ Y++ G ++DA ++F++MV +DI++W  +I   
Sbjct: 463 HWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGL 522

Query: 360 VQSG----------------------------------------------------QSDV 367
            +SG                                                     +D 
Sbjct: 523 AKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDA 582

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
            VA+++V+MY+ C  + +A+QVF+ +  RD+V +N ++  YA      EA +LF ++Q E
Sbjct: 583 HVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 642

Query: 428 GISPNIISWNSVILGFLRNGQMNEA--------KDMFLQMQSLG---------------- 463
           G+ P+ +++ +++     +G +  A        KD +L   SLG                
Sbjct: 643 GLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDA 702

Query: 464 -------VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
                  ++ N+I+W  +I G  Q+  G + +  F+ M   GIKP   T    LSAC+  
Sbjct: 703 LLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHA 762

Query: 517 ASLRNGRAIHGYLIRHDLCLPT-PIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNA 574
             L  GR     + R     PT      +VD+  + G + + + +    P      ++ A
Sbjct: 763 GLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGA 822

Query: 575 MISGYAMHG-LAVEALALFKNLQQKGIDPDS 604
           ++    +HG + V   A   +L+   +DPD+
Sbjct: 823 LLGACRIHGNVPVAERAAESSLK---LDPDN 850



 Score =  222 bits (565), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 237/430 (55%), Gaps = 28/430 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I  L++     EA ++  +M+          Y  LL  CV    ++ G++IH+R++K+G 
Sbjct: 418 IGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGF 477

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  +  V+  L+  YA+C ++  A  LF ++  K++ SW A+IG   + GL  +AL  F
Sbjct: 478 MF--DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVF 535

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +MQ+ G+ P+     ++L AC +   + +GR +H  V++ G      VA++L++MY  C
Sbjct: 536 QDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMC 595

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +++AR+VFD M  R++VA+N+MI GY  + L +EA+++F  +  EG++P +V+  ++L
Sbjct: 596 GSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINML 655

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           +A AN  +L+  K+ H++ + +G   D  LG+++++ Y+K G   DA +VF +M++R+++
Sbjct: 656 NACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVI 715

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLA 406
           +WN +I    Q G+   V+                  Q+F  +    I  D+V + +LL+
Sbjct: 716 SWNAIIGGCAQHGRGQDVL------------------QLFERMKMEGIKPDIVTFVSLLS 757

Query: 407 AYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
           A +  G   E  R F  M  + GI+P I  +  ++    R GQ++E + +   ++++  Q
Sbjct: 758 ACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEAL---IKTMPFQ 814

Query: 466 PNLITWTTLI 475
            N   W  L+
Sbjct: 815 ANTRIWGALL 824



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/423 (22%), Positives = 193/423 (45%), Gaps = 73/423 (17%)

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           + A+ V   +  +G          +L     +  L  G++ H   + +   LD    +++
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 325 INFYSKVGLLEDAEVVFSRM--VERDIVTWNLLIASYVQSGQSDVVVA------------ 370
           IN Y + G +E+A  V++++   ER + +WN ++  YVQ G  +  +             
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 371 --SSIVDMYAKCER---IDNAKQV----FNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
             ++ + + + C+    ++  +++      + +L DV + N +L  YA  G   EA  +F
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVF 302

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
            +M+    + +++SW  +I G+   G    A ++F +MQ  GV PN IT+  +       
Sbjct: 303 DKME----TKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINV------- 351

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541
                                       L+A +  A+L+ G+ +H +++         + 
Sbjct: 352 ----------------------------LNAFSGPAALKWGKTVHSHILNAGHESDLAVG 383

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
           T+LV MYAKCG+    ++VF+   +++L  +N MI G A  G   EA  ++  +Q++G+ 
Sbjct: 384 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM 443

Query: 602 PDSITFTNILNACSHAGLVNEGLELFV-----GMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           P+ IT+  +LNAC +   ++ G E+       G   D  V+ ++      +++ +RCG++
Sbjct: 444 PNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNAL------ISMYARCGSI 497

Query: 657 DEA 659
            +A
Sbjct: 498 KDA 500


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/733 (34%), Positives = 381/733 (51%), Gaps = 87/733 (11%)

Query: 126  YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
            Y     LD AS LF R+  +NV +W  +I  + + G   +A+  F  M++ G+      L
Sbjct: 271  YVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTL 330

Query: 186  PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
             +VL A  +L  + FG  VH   LK G    V+V SSL+ MY KCG +E A+KVFD +  
Sbjct: 331  GSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNE 390

Query: 246  RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
            +NVV WN+M+ GYVQNG   E + +F+ M   G  P   + +SILSA A L  LD G Q 
Sbjct: 391  QNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQL 450

Query: 306  HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ---- 361
            H+V + N    +  +G+++++ Y+K G LEDA   F  +  RD V+WN++I  YVQ    
Sbjct: 451  HSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDE 510

Query: 362  -----------------------------------------------SGQ-SDVVVASSI 373
                                                           +GQ + +   SS+
Sbjct: 511  VEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSL 570

Query: 374  VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
            +DMYAKC  ID+A ++   +  R VV  N L+A YA +    +A  LF  M +EGI+   
Sbjct: 571  IDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQINLE-QAVNLFRDMLVEGINSTE 629

Query: 434  ISWNSVILGFLRNGQMN--------------EAKDMFLQMQSLGVQPN------------ 467
            I++ S++       ++N              +  D FL +  LG+  N            
Sbjct: 630  ITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFS 689

Query: 468  -------LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
                    + WT +ISGL+QN C   A+  ++EM    + P   T   AL AC  V+S++
Sbjct: 690  EFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIK 749

Query: 521  NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGY 579
            +G   H  +            ++LVDMYAKCG++  + +VF ++S  K++  +N+MI G+
Sbjct: 750  DGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGF 809

Query: 580  AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
            A +G A +AL +F  ++Q  + PD +TF  +L ACSH+G V+EG  +F  M + + ++P 
Sbjct: 810  AKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLYGMQPR 869

Query: 640  MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
             +H  C+V+LL R G+L EA   I  +  +PDA +  ++L  C    +    +  +E L+
Sbjct: 870  ADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATMLGACRIHGDDIRGQQAAEKLI 929

Query: 700  QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
            +LEP N   YV LSN YAASG W+EV+ +R  M+EKG++K PGCSWI +G+E ++FVA D
Sbjct: 930  ELEPQNSSPYVLLSNIYAASGNWDEVNTLRREMREKGVKKLPGCSWIVVGQETNMFVAGD 989

Query: 760  RSHPKTEEIYATL 772
            +SH    EI A L
Sbjct: 990  KSHHSASEIDAIL 1002



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 183/655 (27%), Positives = 291/655 (44%), Gaps = 147/655 (22%)

Query: 77  IGPEIYGELLQGCVYKRDMY------------------TGQQIHARILKNGDFFARNEYV 118
           + P IY  +LQ C+ K                      T + IHA+ LK G  F     +
Sbjct: 39  LKPRIYTHILQNCLQKSKQVKTHSLFDEIPQRLSQFSTTNKIIHAQSLKLG--FWSKGVL 96

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
              +V  YAKC  +D A R F +L  K++ +W +I+ ++ + G     +  F  +   GV
Sbjct: 97  GNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGV 156

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
            P+ F    VL +C  L  V  GR VH  V+K+GF+   +   +LI MY KC  L +AR 
Sbjct: 157 WPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARS 216

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +FDG +  + V+W SMI GY++ GL EEA++VF EM   G EP +V+  ++         
Sbjct: 217 IFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTV--------- 267

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
                                     IN Y  +G L++A  +FSRM  R++V WNL+I+ 
Sbjct: 268 --------------------------INAYVDLGRLDNASDLFSRMPNRNVVAWNLMISG 301

Query: 359 YVQSG----------------------------------------------------QSD 366
           + + G                                                     S+
Sbjct: 302 HAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSN 361

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
           V V SS+V MYAKC +++ AK+VF+++  ++VVLWN +L  Y   G + E   LF+ M+ 
Sbjct: 362 VYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKS 421

Query: 427 EGISPNIISWNSVI----------LG-------------------------FLRNGQMNE 451
            G  P+  +++S++          LG                         + ++G + +
Sbjct: 422 CGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALED 481

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A+  F     L    + ++W  +I G  Q     EA   F+ M   GI P   ++   LS
Sbjct: 482 ARQQF----ELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILS 537

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           AC  V  L  G+ +H   ++          +SL+DMYAKCG I  A ++    P + +  
Sbjct: 538 ACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVS 597

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            NA+I+GYA   L  +A+ LF+++  +GI+   ITF ++L+AC     +N G ++
Sbjct: 598 MNALIAGYAQINLE-QAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQI 651



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 150/303 (49%), Gaps = 5/303 (1%)

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           + +AV+L  +M           +  LL  C  ++ +  G+QIH+ ILK G     +E++ 
Sbjct: 610 LEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMG-LQLDDEFLG 668

Query: 120 TKLVVFYAKCDALDVASRLFCRL-RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
             L+  Y        AS LF      K+   W A+I    +   S  AL  + EM+   V
Sbjct: 669 VSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNV 728

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
            PD     + L+AC  +  +  G   H  +   GFD     +S+L+DMY KCGD++ + +
Sbjct: 729 LPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQ 788

Query: 239 VFDGMI-ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
           VF  M   ++V++WNSMIVG+ +NG  E+A+RVF EM    V P  V+   +L+A ++  
Sbjct: 789 VFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSG 848

Query: 298 ALDEGKQAHAVAV-INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLL 355
            + EG+    + V + GM+      + +++   + G L++AE   +++  E D   W  +
Sbjct: 849 RVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATM 908

Query: 356 IAS 358
           + +
Sbjct: 909 LGA 911



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 186/395 (47%), Gaps = 24/395 (6%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  C   R +  G+Q+H   +K G       Y  + L+  YAKC A+D A ++   +  
Sbjct: 535 ILSACASVRGLEQGKQVHCLSVKTGQ--ETKLYSGSSLIDMYAKCGAIDSAHKILACMPE 592

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++V S  A+I    ++ L E+A+  F +M  +G++       ++L AC     +  GR +
Sbjct: 593 RSVVSMNALIAGYAQINL-EQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQI 651

Query: 205 HGYVLKVGFD-GCVFVASSLIDMYGKCGDLEEARKVFDGMI-ARNVVAWNSMIVGYVQNG 262
           H  +LK+G      F+  SL+ MY       +A  +F      ++ V W +MI G  QN 
Sbjct: 652 HSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQND 711

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
            +  A++++ EM    V P + +  S L A A + ++ +G + H++    G + D +  S
Sbjct: 712 CSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSS 771

Query: 323 SIINFYSKVGLLEDAEVVFSRMV-ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           ++++ Y+K G ++ +  VF  M  ++D+++WN +I  + ++G ++  +            
Sbjct: 772 ALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDAL-----------R 820

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVI 440
             D  KQ   S +  D V +  +L A +  GR  E   +F  M  L G+ P       ++
Sbjct: 821 VFDEMKQ---SHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMV 877

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
               R G + EA++    +  L  +P+   W T++
Sbjct: 878 DLLGRWGSLKEAEEF---INKLNFEPDAKVWATML 909



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 143/339 (42%), Gaps = 85/339 (25%)

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           V+ + IVD+YAKC  +D A++ F  +  +D++ WN++L+ ++  G      + F  +   
Sbjct: 95  VLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNS 154

Query: 428 GISPNIISW---------------------NSVILGF--------------LRNGQMNEA 452
           G+ PN  ++                     N V +GF               +   + +A
Sbjct: 155 GVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDA 214

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           + +F       V+ + ++WT++I G  +     EA+  FQEM + G +P        ++A
Sbjct: 215 RSIF----DGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINA 270

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
             D+  L N                                   A  +F   P++ +  +
Sbjct: 271 YVDLGRLDN-----------------------------------ASDLFSRMPNRNVVAW 295

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL-----ELF 627
           N MISG+A  G  VEA+  F+N+++ GI     T  ++L+A +    ++ GL      L 
Sbjct: 296 NLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALK 355

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
            G+ S+  V  S+      V++ ++CG ++ A +V  T+
Sbjct: 356 QGLHSNVYVGSSL------VSMYAKCGKMEAAKKVFDTL 388



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 13/200 (6%)

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           +VD+YAKC ++  A+R F     K++  +N+++S ++  G     +  F  L   G+ P+
Sbjct: 100 IVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPN 159

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF----GCVVNLLSRCGNLDEA 659
             TF  +L++C+   +V  G ++   +     VK   E      G ++ + ++C  L +A
Sbjct: 160 EFTFAIVLSSCARLEMVKCGRQVHCNV-----VKMGFESISYCEGALIGMYAKCNFLTDA 214

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL--EPDNPGNYVALSNAYA 717
            R I     + D     S++   +K    E A  + + + ++  EPD    +V + NAY 
Sbjct: 215 -RSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVA-FVTVINAYV 272

Query: 718 ASGRWNEVSQVRDIMKEKGL 737
             GR +  S +   M  + +
Sbjct: 273 DLGRLDNASDLFSRMPNRNV 292


>gi|125571124|gb|EAZ12639.1| hypothetical protein OsJ_02552 [Oryza sativa Japonica Group]
          Length = 607

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/470 (46%), Positives = 291/470 (61%), Gaps = 52/470 (11%)

Query: 131 ALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLK 190
           A   A R F  L  KN F+WAA+IG+  R GL  KAL G+  M E GV  DNFV+PNVLK
Sbjct: 118 AFGDAERAFSALPAKNAFAWAAVIGMWSRAGLHGKALAGYAAMLEAGVPADNFVVPNVLK 177

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA 250
           AC  LG +G GRAVHGY  K G   CV+V SSL+D YGKCG++++AR+VFD M  R VV+
Sbjct: 178 ACAGLGLLGPGRAVHGYAWKAGVGNCVYVMSSLVDFYGKCGEVDDAREVFDVMPERTVVS 237

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           WNSM++GY+ NG  +EA  +FYEM +EGV PTRVSV S LSASA+L+ LD G+Q HAVAV
Sbjct: 238 WNSMLMGYIHNGRIDEAADLFYEMRVEGVLPTRVSVLSFLSASADLEVLDGGRQGHAVAV 297

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD---- 366
            +G+E+D +LGSS+INFY KVGL+E AEV+F +MVERDIVTWNL+I+ Y+Q GQ+D    
Sbjct: 298 SSGLEMDLILGSSMINFYCKVGLVEAAEVIFEQMVERDIVTWNLMISGYLQDGQTDKALT 357

Query: 367 --------------VVVAS----------------------------------SIVDMYA 378
                         V +AS                                  S++++Y+
Sbjct: 358 TCHRMLESGLKFDCVTLASVIMACVKSYRMEVGGAAHAYAVRNNLESDKTVFCSLIELYS 417

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
              RI+  ++VF+SI  RD+  W  ++ AYAD G   EA +L YQMQLEG SP    W+S
Sbjct: 418 SSGRIEQMRRVFDSIRRRDIATWKAMICAYADHGMGSEALKLLYQMQLEGTSPTAACWDS 477

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           V+  F+RNGQ+++A   F +M     +PNL TW+ LISGL++N    E +    +M E  
Sbjct: 478 VLSAFIRNGQLDDALSTFYEMLQTSTRPNLRTWSLLISGLSRNGMHPEVMNLCCKMQEVE 537

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
             PS T  + AL A    AS++ G+A+H  +++  L L   +V SL++MY
Sbjct: 538 PAPSPTIFSAALLAVKSAASVQYGKAMHACIVKKGLLLSKSVVQSLLNMY 587



 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 210/471 (44%), Gaps = 89/471 (18%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G   +A + F  + A+N  AW ++I  + + GL+ +A+  +  M   GV      V ++L
Sbjct: 117 GAFGDAERAFSALPAKNAFAWAAVIGMWSRAGLHGKALAGYAAMLEAGVPADNFVVPNVL 176

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A A L  L                     G ++  +  K G+                 
Sbjct: 177 KACAGLGLLGP-------------------GRAVHGYAWKAGV----------------- 200

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
                         + V V SS+VD Y KC  +D+A++VF+ +  R VV WN++L  Y  
Sbjct: 201 -------------GNCVYVMSSLVDFYGKCGEVDDAREVFDVMPERTVVSWNSMLMGYIH 247

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNS-----------------------------VIL 441
            GR  EA+ LFY+M++EG+ P  +S  S                             +IL
Sbjct: 248 NGRIDEAADLFYEMRVEGVLPTRVSVLSFLSASADLEVLDGGRQGHAVAVSSGLEMDLIL 307

Query: 442 G------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
           G      + + G +  A+ +F QM    V+ +++TW  +ISG  Q+   ++A+     ML
Sbjct: 308 GSSMINFYCKVGLVEAAEVIFEQM----VERDIVTWNLMISGYLQDGQTDKALTTCHRML 363

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
           E+G+K    T+   + AC     +  G A H Y +R++L     +  SL+++Y+  G I 
Sbjct: 364 ESGLKFDCVTLASVIMACVKSYRMEVGGAAHAYAVRNNLESDKTVFCSLIELYSSSGRIE 423

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           Q +RVFD    +++  + AMI  YA HG+  EAL L   +Q +G  P +  + ++L+A  
Sbjct: 424 QMRRVFDSIRRRDIATWKAMICAYADHGMGSEALKLLYQMQLEGTSPTAACWDSVLSAFI 483

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
             G +++ L  F  M      +P++  +  +++ LSR G   E + +   M
Sbjct: 484 RNGQLDDALSTFYEMLQT-STRPNLRTWSLLISGLSRNGMHPEVMNLCCKM 533



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%)

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G    A+R F   P+K    + A+I  ++  GL  +ALA +  + + G+  D+    N+L
Sbjct: 117 GAFGDAERAFSALPAKNAFAWAAVIGMWSRAGLHGKALAGYAAMLEAGVPADNFVVPNVL 176

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
            AC+  GL+  G  +  G      V   +     +V+   +CG +D+A  V   MP
Sbjct: 177 KACAGLGLLGPGRAVH-GYAWKAGVGNCVYVMSSLVDFYGKCGEVDDAREVFDVMP 231



 Score = 41.2 bits (95), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 10/121 (8%)

Query: 112 FARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFV 171
           F RN  ++  L  FY   + L  ++R        N+ +W+ +I    R G+  + +    
Sbjct: 482 FIRNGQLDDALSTFY---EMLQTSTR-------PNLRTWSLLISGLSRNGMHPEVMNLCC 531

Query: 172 EMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCG 231
           +MQE   +P   +    L A  +   V +G+A+H  ++K G      V  SL++MYG   
Sbjct: 532 KMQEVEPAPSPTIFSAALLAVKSAASVQYGKAMHACIVKKGLLLSKSVVQSLLNMYGSFN 591

Query: 232 D 232
           D
Sbjct: 592 D 592


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/818 (30%), Positives = 418/818 (51%), Gaps = 94/818 (11%)

Query: 49  HQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKN 108
           ++I    ++K+I   +D  ++ + R        Y  +L+ C  K D+  G+ IH +++K+
Sbjct: 105 NKIPETVEKKRIWRGLDFDSKGRLRQ-------YSGMLRTCASKGDLNEGKAIHGQVIKS 157

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G     + ++   LV  YAKC + + A ++F  +  ++V SW A+I      G    A+ 
Sbjct: 158 G--INPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVN 215

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F EM+ +GV  + F     LKAC     + FG+ VH   +KVG    +FV S+L+D+Y 
Sbjct: 216 LFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYA 275

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG++  A +VF  M  +N V+WN+++ G+ Q G  E+ + +F  MT   +  ++ ++++
Sbjct: 276 KCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLST 335

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
           +L   AN   L  G+  H++A+  G ELD  +   +++ YSK GL  DA  VF R+ + D
Sbjct: 336 VLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPD 395

Query: 349 IVTWNLLIASYVQSGQS------------------------------------------- 365
           +V+W+ +I    Q GQS                                           
Sbjct: 396 VVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHA 455

Query: 366 ---------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
                    D  V +++V MY K   + +  +VF +   RD++ WN LL+ + D      
Sbjct: 456 CVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDT 515

Query: 417 ASRLFYQMQLEGISPNIISWNSVI----------LGFLRNGQMNE--------------- 451
             R+F QM  EG +PN+ ++ S++          LG   + Q+ +               
Sbjct: 516 GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVD 575

Query: 452 --AKDMFLQ----MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
             AK+ FL+    + +  ++ +L  WT +++G  Q+  G +A+  F +M   G+KP+  T
Sbjct: 576 MYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFT 635

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           +  +LS C+ +A+L +GR +H   I+        + ++LVDMYAKCG +  A+ VFD   
Sbjct: 636 LASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLV 695

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
           S++   +N +I GY+ HG   +AL  F+ +  +G  PD +TF  +L+ACSH GL+ EG +
Sbjct: 696 SRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKK 755

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
            F  +   + + P++EH+ C+V++L R G   E    I  M    +  I  ++L  C   
Sbjct: 756 HFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMH 815

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
              E  E  +  L +LEP+   NY+ LSN +AA G W++V+ VR +M  +G++K PGCSW
Sbjct: 816 GNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSW 875

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVS 783
           +++  ++HVF++ D SHPK  EI+  L L  +H +L+S
Sbjct: 876 VEVNGQVHVFLSHDGSHPKIREIH--LKLQDLHQKLMS 911


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/787 (30%), Positives = 425/787 (54%), Gaps = 96/787 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  LLQ  + +  +   + IH +I+ +G     + ++   L+   +K D +D A  +F +
Sbjct: 30  FANLLQLSISRNPIIHYKIIHGQIIVSG--LQSDTFLANILINVCSKSDRVDNARVVFDK 87

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGF 200
           +  KN+ +W++++ +  + G SE+AL+ FV++Q + G  P+ FVL +V++AC  LG V  
Sbjct: 88  MPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEK 147

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G  +HG+V++ GFD  V+V +SLID Y K G++EEAR VFD +  +  V W ++I GY +
Sbjct: 148 GAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTK 207

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            G +  ++ +F +M    V P R  V+S+LSA + L+ L+ GKQ HA  +  G E+D  +
Sbjct: 208 CGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSV 267

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG----------------- 363
            + +I+FY+K   ++    +F +MV ++I++W  +I+ Y+Q+                  
Sbjct: 268 VNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGW 327

Query: 364 -----------------------------------QSDVVVASSIVDMYAKCERIDNAKQ 388
                                              +SD  V + ++DMYAK   + +AK+
Sbjct: 328 KPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKK 387

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE--------------------- 427
           VF+ +  ++V+ +N ++  Y+   +  EA  LF++M++                      
Sbjct: 388 VFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFA 447

Query: 428 --------------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
                         G+S ++ + +++I  + +   + +A+ +F +M     + +++ W  
Sbjct: 448 LELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMN----EKDIVVWNA 503

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +  G TQ+    EA+  +  +  +  KP+  T    ++A +++ASLR+G+  H  L++  
Sbjct: 504 MFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMG 563

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
           L     +  +LVDMYAKCG+I +A+++F+ S  +++  +N+MIS +A HG A EAL +F+
Sbjct: 564 LDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFR 623

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            + ++GI P+ +TF  +L+ACSHAG V +GL  F  M     +KP  EH+ CVV+LL R 
Sbjct: 624 EMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRS 682

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G L EA   I  MP +P A +  SLLS C  +   EL +Y +E  +  +P + G+Y+ LS
Sbjct: 683 GKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLS 742

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           N +A+ G W +V +VRD M    + K PG SWI++  +++VF+A D +H +  +I + L 
Sbjct: 743 NIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDTTH-READIGSVLD 801

Query: 774 LLGMHVR 780
           +L  H++
Sbjct: 802 ILIQHIK 808



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 208/494 (42%), Gaps = 119/494 (24%)

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           + +  + P R    ++L  S + + +   K  H   +++G++ D  L + +IN  SK   
Sbjct: 18  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDR 77

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------------------------- 365
           +++A VVF +M  ++++TW+ +++ Y Q G S                            
Sbjct: 78  VDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIR 137

Query: 366 -------------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
                                    DV V +S++D Y+K   I+ A+ VF+ +  +  V 
Sbjct: 138 ACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVT 197

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEA--- 452
           W T++A Y   GRS  +  LF QM+   + P+    +SV+     L FL  G+   A   
Sbjct: 198 WTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVL 257

Query: 453 ---------------------------KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
                                      + +F QM    V  N+I+WTT+ISG  QNS   
Sbjct: 258 RRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQM----VVKNIISWTTMISGYMQNSFDW 313

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
           EA+  F EM   G KP     T  L++C    +L  GR +H Y I+ +L     +   L+
Sbjct: 314 EAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLI 373

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           DMYAK   +  AK+VFD+   + +  YNAMI GY+      EAL LF  ++ +   P  +
Sbjct: 374 DMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLL 433

Query: 606 TFTNILNACS-----------HAGLVNEG--LELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           TF ++L   +           H  ++  G  L+LF G                ++++ S+
Sbjct: 434 TFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAG--------------SALIDVYSK 479

Query: 653 CGNLDEALRVILTM 666
           C  + +A  V   M
Sbjct: 480 CSYVKDARHVFEEM 493


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 259/791 (32%), Positives = 401/791 (50%), Gaps = 93/791 (11%)

Query: 71  KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDF-------------FARNEY 117
           +C    + P  +  LL+ C   R + T +QIH +I+  G                  + Y
Sbjct: 23  ECTGRDVSPTHFASLLKEC---RSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSY 79

Query: 118 VETK-----LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
           V  K     +V  Y  C A   A  +  R+       W  ++  +   G  ++A+     
Sbjct: 80  VSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCR 139

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M   G  PD+F LP  LKACG L     G A HG +   GF+  VFV ++L+ MY + G 
Sbjct: 140 MLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGS 199

Query: 233 LEEARKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTL---EGVEPTR--- 283
           LE+A  VFD +  +   +V++WNS++  +V+      A+ +F EMT    E     R   
Sbjct: 200 LEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDI 259

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           +S+ +IL A A+L AL + K+ H+ A+ NG   D  + +++I+ Y+K G ++DA  VF+ 
Sbjct: 260 ISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNV 319

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           M  +D+V+WN ++  Y QSG+             A  E   N ++     I  DV+ W+ 
Sbjct: 320 MEFKDVVSWNAMVTGYTQSGK-----------FGAAFELFKNMRK---ENIPLDVITWSA 365

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK----- 453
           ++A YA  G   EA   F QM L G  PN ++  S++     LG L  G    A      
Sbjct: 366 VIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKC 425

Query: 454 ------------------------DMFLQMQSLGV-----------QPNLITWTTLISGL 478
                                   DM+ + +S              + N++TWT +I G 
Sbjct: 426 LLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGY 485

Query: 479 TQNSCGNEAILFFQEMLET--GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
            Q    N+A+  F EM+     + P+  TI+C L AC  ++SLR G+ IH Y+ RH    
Sbjct: 486 AQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYE 545

Query: 537 PTP--IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
            +   +   L+DMY+KCG++  A+ VFD  P +    + +M+SGY MHG   EAL +F  
Sbjct: 546 SSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDK 605

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           +Q+ G  PD I+F  +L ACSH+G+V++GL+ F  M SD+ V  S +H+ CV++LL+R G
Sbjct: 606 MQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSG 665

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            LD+A + I  MP +P A I  +LLS C   +  ELAEY    L+ ++ +N G+Y  +SN
Sbjct: 666 RLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISN 725

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            YA + RW +V+++R +MK+ G++K PGCSW+Q  +    F   DRSHP + EIY+ L  
Sbjct: 726 IYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLER 785

Query: 775 LGMHVRLVSKV 785
           L   ++++  V
Sbjct: 786 LIGRIKVMGYV 796


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 242/783 (30%), Positives = 400/783 (51%), Gaps = 80/783 (10%)

Query: 74  NFQIGP---EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD 130
           ++Q  P   + +  + Q C  ++ +  G+Q HAR++     F    +V   L+  Y KC 
Sbjct: 34  SYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTE--FKPTVFVTNCLIQMYIKCS 91

Query: 131 ALD-------------------------------VASRLFCRLRVKNVFSWAAIIGLNCR 159
            L+                               VA +LF  +  ++V SW ++I     
Sbjct: 92  DLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLH 151

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            G   K +  F++M   G   D      VLK+C +L   G G  +HG  +K+GFD  V  
Sbjct: 152 NGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVT 211

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            S+L+DMY KC  L+ + + F  M  +N V+W+++I G VQN      + +F EM   GV
Sbjct: 212 GSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGV 271

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
             ++ +  S+  + A L AL  G Q H  A+      D V+G++ ++ Y K   L DA+ 
Sbjct: 272 GVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQK 331

Query: 340 VFSRMVERDIVTWNLLIASYVQSG------------------------------------ 363
           +F+ +   ++ ++N +I  Y +S                                     
Sbjct: 332 LFNSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKS 391

Query: 364 --QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
             QS++ VA++I+DMY KC  +  A  VF  ++ RD V WN ++AA+   G   +   LF
Sbjct: 392 LCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF 451

Query: 422 YQMQLEGISPNIISWNSVIL--GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
              ++      + S+  + L   + + G M +A+ +  ++     +  +++W  +ISG +
Sbjct: 452 IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRL----AEQTVVSWNAIISGFS 507

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
                 EA   F +MLE G+ P   T    L  C ++ ++  G+ IH  +I+ +L     
Sbjct: 508 LQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAY 567

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           I ++LVDMY+KCGN+   + +F+ +P+++   +NAM+ GYA HGL  EAL +F+ +Q + 
Sbjct: 568 ISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLEN 627

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           + P+  TF  +L AC H GLV +GL  F  M S++ + P +EH+ CVV+++ R G + +A
Sbjct: 628 VKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKA 687

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
           L +I  MP + DA I  +LLS C      E+AE  +  +LQLEP++   YV LSN YA +
Sbjct: 688 LELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANA 747

Query: 720 GRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           G WNEV+++R +M+  GL+K PGCSWI+I  E+H F+  D++HP+++EIY  L +L   +
Sbjct: 748 GMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEM 807

Query: 780 RLV 782
           + V
Sbjct: 808 KWV 810



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 161/642 (25%), Positives = 294/642 (45%), Gaps = 80/642 (12%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ SL   Y H           R+ +D+  +M           +  +L+ C    D   G
Sbjct: 141 SWNSLISGYLHNGDH-------RKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGG 193

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
            QIH   +K G  F  +    + L+  YAKC  LD + + F  +  KN  SW+AII    
Sbjct: 194 IQIHGLAVKMG--FDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCV 251

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +       L  F EMQ+ GV        +V ++C  L  +  G  +HG+ LK  F   V 
Sbjct: 252 QNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVV 311

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           + ++ +DMY KC +L +A+K+F+ +   N+ ++N++IVGY ++               +G
Sbjct: 312 IGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD--------------KG 357

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           +    VS++    A A +    EG Q H +++ +  + +  + ++I++ Y K G L +A 
Sbjct: 358 LGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEAC 417

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQS-------------------DVVVASSIVDMYAK 379
           +VF  MV RD V+WN +IA++ Q+G                     D  V  +++DMY+K
Sbjct: 418 LVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSK 477

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
           C  ++ A+++ + +  + VV WN +++ ++   +S EA + F +M   G+ P+  ++ ++
Sbjct: 478 CGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATI 537

Query: 440 I----------LGFLRNGQMNEAK------------DMFLQ---MQSLGV----QPN--L 468
           +          LG   + Q+ + +            DM+ +   MQ   +     PN   
Sbjct: 538 LDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDF 597

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG-RAIHG 527
           +TW  ++ G  Q+  G EA+  F+ M    +KP+  T    L AC  +  +  G    H 
Sbjct: 598 VTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHS 657

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHG-LA 585
            L  + L       + +VD+  + G + +A  + +  P   +  ++  ++S   +HG + 
Sbjct: 658 MLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVE 717

Query: 586 VEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLEL 626
           V   A +  LQ   ++P DS  +  + N  ++AG+ NE  +L
Sbjct: 718 VAEKAAYSILQ---LEPEDSAAYVLLSNIYANAGMWNEVTKL 756


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/624 (35%), Positives = 336/624 (53%), Gaps = 91/624 (14%)

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
           I  N V W   I+GYV+NG   +A+R++Y+M   G+ P ++   S++ A  +   L  G+
Sbjct: 81  IRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGR 140

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
           + H   +  G E D ++G+++ + Y+K G LE+A  VF RM +RD+V+WN +IA Y Q+G
Sbjct: 141 KVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNG 200

Query: 364 Q----------------------------------------------------SDVVVAS 371
           Q                                                    SDV+V +
Sbjct: 201 QPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVN 260

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
            +V+MYAKC  ++ A ++F  + +RDV  WN ++  Y+   +  EA   F +MQ+ GI P
Sbjct: 261 GLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKP 320

Query: 432 NIISWNSVIL---------------------GFLRN--------------GQMNEAKDMF 456
           N I+  SV+                      GF  N              G +N A  +F
Sbjct: 321 NSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLF 380

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            +M     + N++ W  +ISG +Q+   +EA+  F EM   GIKP +  I   L AC   
Sbjct: 381 ERMP----KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHF 436

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
            +L  G+ IHGY IR        + T LVD+YAKCGN++ A+++F+  P +++  +  MI
Sbjct: 437 LALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMI 496

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
             Y +HG   +ALALF  +Q+ G   D I FT IL ACSHAGLV++GL+ F  M SD+ +
Sbjct: 497 LAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGL 556

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
            P +EH+ C+V+LL R G+LDEA  +I  M  +PDA++ G+LL  C      EL E  ++
Sbjct: 557 APKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAK 616

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
           HL +L+PDN G YV LSN YA + RW +V+++R +MKEKG++K PGCS + +  ++  F+
Sbjct: 617 HLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFL 676

Query: 757 ACDRSHPKTEEIYATLALLGMHVR 780
             DR+HP++E+IYA L +L   +R
Sbjct: 677 VGDRTHPQSEQIYAMLEILYEQMR 700



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 142/505 (28%), Positives = 255/505 (50%), Gaps = 58/505 (11%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           +A+ L  +M+         ++  +++ C  + D+  G+++H  I+  G  F  +  V T 
Sbjct: 103 KALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARG--FESDVIVGTA 160

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L   Y KC +L+ A ++F R+  ++V SW AII    + G   +AL  F EMQ +G+ P+
Sbjct: 161 LASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPN 220

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
           +  L +V+  C  L  +  G+ +H Y ++ G +  V V + L++MY KCG++  A K+F+
Sbjct: 221 SSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFE 280

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M  R+V +WN++I GY  N  + EA+  F  M + G++P  +++ S+L A A+L AL++
Sbjct: 281 RMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQ 340

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           G+Q H  A+ +G E ++V+G++++N Y+K G +  A  +F RM ++++V WN +I+ Y Q
Sbjct: 341 GQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQ 400

Query: 362 SG----------------------------------------------------QSDVVV 369
            G                                                    +S+VVV
Sbjct: 401 HGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVV 460

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
            + +VD+YAKC  ++ A+++F  +  +DVV W T++ AY   G   +A  LF +MQ  G 
Sbjct: 461 GTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGT 520

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAI 488
             + I++ +++      G +++    F  M+S  G+ P L  +  L+  L +    +EA 
Sbjct: 521 KLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEAN 580

Query: 489 LFFQEMLETGIKPSTTTITCALSAC 513
              + M    ++P        L AC
Sbjct: 581 GIIKNM---SLEPDANVWGALLGAC 602



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 229/426 (53%), Gaps = 20/426 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+  S+  Q  EA+ L +EM+    +        ++  C +   +  G+QIH   +++G 
Sbjct: 193 IAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSG- 251

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +  V   LV  YAKC  ++ A +LF R+ +++V SW AIIG         +AL  F
Sbjct: 252 -IESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFF 310

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             MQ  G+ P++  + +VL AC  L  +  G+ +HGY ++ GF+    V ++L++MY KC
Sbjct: 311 NRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKC 370

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G++  A K+F+ M  +NVVAWN++I GY Q+G   EA+ +F EM  +G++P   ++ S+L
Sbjct: 371 GNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVL 430

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A A+  AL++GKQ H   + +G E + V+G+ +++ Y+K G +  A+ +F RM E+D+V
Sbjct: 431 PACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVV 490

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           +W  +I +Y   G  +  +A     +++K +               D + +  +L A + 
Sbjct: 491 SWTTMILAYGIHGHGEDALA-----LFSKMQETGTK---------LDHIAFTAILTACSH 536

Query: 411 LGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
            G   +  + F  M+ + G++P +  +  ++    R G ++EA  +   ++++ ++P+  
Sbjct: 537 AGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGI---IKNMSLEPDAN 593

Query: 470 TWTTLI 475
            W  L+
Sbjct: 594 VWGALL 599



 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 161/322 (50%), Gaps = 48/322 (14%)

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG-- 442
           N  Q   + I  + V+W   +  Y   G   +A RL+YQMQ  GI+P+ + + SVI    
Sbjct: 72  NQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACG 131

Query: 443 ---------------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLI 469
                                            + + G +  A+ +F +M     + +++
Sbjct: 132 SQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMP----KRDVV 187

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           +W  +I+G +QN    EA+  F EM   GIKP+++T+   +  C  + +L  G+ IH Y 
Sbjct: 188 SWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYA 247

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
           IR  +     +V  LV+MYAKCGN++ A ++F+  P +++  +NA+I GY+++    EAL
Sbjct: 248 IRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEAL 307

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV--- 646
           A F  +Q +GI P+SIT  ++L AC+H   + +G ++       + ++   E    V   
Sbjct: 308 AFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQI-----HGYAIRSGFESNDVVGNA 362

Query: 647 -VNLLSRCGNLDEALRVILTMP 667
            VN+ ++CGN++ A ++   MP
Sbjct: 363 LVNMYAKCGNVNSAYKLFERMP 384



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 129/265 (48%), Gaps = 24/265 (9%)

Query: 421 FYQMQLEGISPNIISW--------NSVILGFLRNGQMNEAKDMF-----LQMQSLGVQPN 467
           F+   L  IS ++  +         S ++  LR  ++   +++       Q     ++ N
Sbjct: 25  FHHTHLHSISYHVCFYFYGPSPLPTSTVVAQLRRNKVKTTREVSACANQTQFTQTDIRNN 84

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
            + W   I G  +N   N+A+  + +M  TGI P        + AC   + L+ GR +H 
Sbjct: 85  AVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHE 144

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
            +I         + T+L  MY KCG++  A++VFD  P +++  +NA+I+GY+ +G   E
Sbjct: 145 DIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYE 204

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV-----GMFSDHQVKPSMEH 642
           ALALF  +Q  GI P+S T  +++  C+H   + +G ++       G+ SD  V   +  
Sbjct: 205 ALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL-- 262

Query: 643 FGCVVNLLSRCGNLDEALRVILTMP 667
               VN+ ++CGN++ A ++   MP
Sbjct: 263 ----VNMYAKCGNVNTAHKLFERMP 283


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/729 (34%), Positives = 377/729 (51%), Gaps = 91/729 (12%)

Query: 132  LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
            LD A  LF ++   NV +W  +I  + + G   +A+  F  M + GV      L +VL A
Sbjct: 299  LDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSA 358

Query: 192  CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
              +L  + +G  VH   +K G +  V+V SSLI+MY KC  +E A+KVFD +  RN+V W
Sbjct: 359  IASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLW 418

Query: 252  NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
            N+M+ GY QNG   + +++F EM   G  P   + TSILSA A L+ L+ G+Q H+  + 
Sbjct: 419  NAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIK 478

Query: 312  NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD----- 366
            +  E +  + +++++ Y+K G LE+A   F  +  RD V+WN +I  YVQ    D     
Sbjct: 479  HNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNM 538

Query: 367  -----------------------------------------------VVVASSIVDMYAK 379
                                                           +   SS++DMY K
Sbjct: 539  FRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVK 598

Query: 380  CERIDNAKQVFNSIILRDVVLWNTLLAAYA--DLGRSGEASRLFYQMQLEGISPNIISWN 437
            C  I+ A+ VF+ +  R VV  N ++A YA  DL    EA  LF +MQ EG++P+ I++ 
Sbjct: 599  CGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLV---EAIDLFQEMQNEGLNPSEITFA 655

Query: 438  SVI---------------------LGFLRNGQ----------MNEAK--DMFLQMQSLGV 464
            S++                      G L +G           MN  +  D  +       
Sbjct: 656  SLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQY 715

Query: 465  QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
              + I WT +ISG TQN C  EA+  +QEM     +P   T    L AC+ +ASL +GR 
Sbjct: 716  PKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRM 775

Query: 525  IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMHG 583
            IH  +    L       +++VDMYAKCG++  + +VF+   SK ++  +N+MI G+A +G
Sbjct: 776  IHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNG 835

Query: 584  LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
             A  AL +F  ++   I PD +TF  +L ACSHAG V+EG E+F  M   +++ P ++H 
Sbjct: 836  YAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHC 895

Query: 644  GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
             C+++LL R G L EA   I  +  +P+A I  +LL  C    +       +E L++LEP
Sbjct: 896  ACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEP 955

Query: 704  DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHP 763
            +N   YV LSN YAASG W+EV+ VR  M+EKGLRK PGCSWI +G++ ++FVA D+ HP
Sbjct: 956  ENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCSWIVVGQKTNLFVAGDKFHP 1015

Query: 764  KTEEIYATL 772
               EI+A L
Sbjct: 1016 SAGEIHALL 1024



 Score =  295 bits (756), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 199/689 (28%), Positives = 352/689 (51%), Gaps = 79/689 (11%)

Query: 1   MASFTFTTPPNPKFSHTKPQ---KPLKLSQTHLTKLRESDN---SYESLYKSYFHQISSL 54
           MA  +  T    +F+H+  +   + ++  +   T L  S++    ++S + +   Q++  
Sbjct: 1   MAIESSATDRRHRFNHSGTRLSHESMRHGRAPFTTLHRSNSLSFHHQSNFSTIQRQVNQT 60

Query: 55  SKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFAR 114
           S+ K     + +  + +C+  +I    + E  Q     +   T + IHA+ LK G  F  
Sbjct: 61  SEHKIFTHLLKICLQ-QCQRIKI-RHPFDETPQRLA--QASRTSKTIHAQTLKFG--FGS 114

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ 174
              + + +V  YAKC  ++ A++ F +L  +++ +W +++ +  R G  E+ +  F  +Q
Sbjct: 115 KGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQ 174

Query: 175 EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLE 234
             GVSP+ F    VL +C  L  +  G+ VH  V+K+GF+   F   SLIDMY KCG L 
Sbjct: 175 NCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLV 234

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
           +ARK+FD ++  + V+W +MI GYVQ GL EEA++VF +M   G+ P +V+  ++++A  
Sbjct: 235 DARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACV 294

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSI--------------INFYS---KVGLLEDA 337
            L  LD+     A  +   M   NV+  ++              I+F+    K G+    
Sbjct: 295 GLGRLDD-----ACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTR 349

Query: 338 EV---VFSRMVERDIVTWNLLI-ASYVQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNS 392
                V S +   + + + LL+ A  ++ G  S+V V SS+++MYAKCE+++ AK+VF++
Sbjct: 350 STLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDA 409

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG---------- 442
           +  R++VLWN +L  YA  G + +  +LF +M+  G  P+  ++ S++            
Sbjct: 410 LDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMG 469

Query: 443 ----------------FLRN---------GQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
                           F+ N         G + EA+  F  +++     + ++W  +I G
Sbjct: 470 RQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRN----RDNVSWNAIIVG 525

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
             Q    +EA   F+ M+  GI P   ++   LS C ++ +L  G  +H +L++  L   
Sbjct: 526 YVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTC 585

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
               +SL+DMY KCG I  A+ VF   PS+ +   NA+I+GYA + L VEA+ LF+ +Q 
Sbjct: 586 LYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDL-VEAIDLFQEMQN 644

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLEL 626
           +G++P  ITF ++L+AC+    +N G ++
Sbjct: 645 EGLNPSEITFASLLDACTGPYKLNLGRQI 673



 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 208/409 (50%), Gaps = 57/409 (13%)

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           K  HA  +  G      LGS+I++ Y+K G +E A   F+++ +RDI+ WN +++ Y + 
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQ 160

Query: 363 GQSDVVV----------------------------------------------------A 370
           G  + V+                                                     
Sbjct: 161 GSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCE 220

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
            S++DMY+KC  + +A+++F++++  D V W  ++A Y  +G   EA ++F  MQ  G+ 
Sbjct: 221 GSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLV 280

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
           P+ +++ +VI   +  G++++A D+F+QM +     N++ W  +ISG  +  C  EAI F
Sbjct: 281 PDQVAFVTVITACVGLGRLDDACDLFVQMPN----TNVVAWNVMISGHVKRGCDIEAIDF 336

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           F+ M +TG+K + +T+   LSA   + +L  G  +H   I+  L     + +SL++MYAK
Sbjct: 337 FKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAK 396

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           C  +  AK+VFD    + L ++NAM+ GYA +G A + + LF  ++  G  PD  T+T+I
Sbjct: 397 CEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSI 456

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           L+AC+    +  G +L       H  + ++     +V++ ++CG L+EA
Sbjct: 457 LSACACLECLEMGRQLH-SFIIKHNFEYNLFVENTLVDMYAKCGALEEA 504



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 158/310 (50%), Gaps = 13/310 (4%)

Query: 57  EKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNE 116
           +  + EA+DL  EM+          +  LL  C     +  G+QIH  I K G  +   +
Sbjct: 629 QNDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLY-DGD 687

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRV-KNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
           ++   L+V Y        A  LF   +  K+   W AII  + + G SE+AL  + EM  
Sbjct: 688 FLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHR 747

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
           +   PD     +VL+AC  L  +G GR +H  +  VG D      S+++DMY KCGD++ 
Sbjct: 748 NNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKS 807

Query: 236 ARKVFDGMIARN-VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
           + +VF+ M ++N V++WNSMIVG+ +NG  E A+++F EM    + P  V+   +L+A +
Sbjct: 808 SVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACS 867

Query: 295 NLDALDEGKQ-----AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERD 348
           +   + EG++      H+  ++    LD+   + +I+   + G L++AE    ++  E +
Sbjct: 868 HAGRVSEGREIFDIMVHSYKIVP--RLDHC--ACMIDLLGRWGFLKEAEEFIDKLNFEPN 923

Query: 349 IVTWNLLIAS 358
            + W  L+ +
Sbjct: 924 AMIWATLLGA 933



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 141/335 (42%), Gaps = 85/335 (25%)

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           + S+IVD+YAKC  ++ A + FN +  RD++ WN++L+ Y+  G   +    F  +Q  G
Sbjct: 118 LGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCG 177

Query: 429 ISPNIISWNSVI---------------------LGFLRN--------------GQMNEAK 453
           +SPN  ++  V+                     +GF  N              G + +A+
Sbjct: 178 VSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDAR 237

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +F  +    V P+ ++WT +I+G  Q     EA+  F++M + G+ P        ++AC
Sbjct: 238 KIFDAV----VDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITAC 293

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
             +                                   G +  A  +F   P+  +  +N
Sbjct: 294 VGL-----------------------------------GRLDDACDLFVQMPNTNVVAWN 318

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV----- 628
            MISG+   G  +EA+  FKN+ + G+     T  ++L+A +    +N GL +       
Sbjct: 319 VMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQ 378

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
           G+ S+  V  S+      +N+ ++C  ++ A +V 
Sbjct: 379 GLNSNVYVGSSL------INMYAKCEKMEAAKKVF 407



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 105/209 (50%), Gaps = 9/209 (4%)

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
           R  + IH   ++        + +++VD+YAKCGN+  A + F+    +++  +N+++S Y
Sbjct: 98  RTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMY 157

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
           +  G   + +  F +LQ  G+ P+  T+  +L++C+    ++ G ++  G+    ++   
Sbjct: 158 SRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVI---KMGFE 214

Query: 640 MEHF--GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
              F  G ++++ S+CG+L +A R I     DPD     ++++  V+    E A  + E 
Sbjct: 215 FNSFCEGSLIDMYSKCGSLVDA-RKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFED 273

Query: 698 L--LQLEPDNPGNYVALSNAYAASGRWNE 724
           +  L L PD    +V +  A    GR ++
Sbjct: 274 MQKLGLVPDQVA-FVTVITACVGLGRLDD 301


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/699 (34%), Positives = 381/699 (54%), Gaps = 67/699 (9%)

Query: 126 YAKCDALDVASRLFCRL--RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
           Y +C A   A  L  RL      VF W A+I  + ++GL +  L  + +MQ  G  PD++
Sbjct: 69  YIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHY 128

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
             P VLKACG +  +  G +VH  V   G    VF+ +S++ MYG+CG L++A ++FD +
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188

Query: 244 IAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEM----TLEGVEPTRVSVTSILSASANL 296
           + R   ++V+WNS++  YVQ G +  A+R+ + M    +L+ + P  +++ +IL A A++
Sbjct: 189 LERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLK-LRPDAITLVNILPACASV 247

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            AL  GKQ H  +V NG+  D  +G+++++ Y+K   + +A  VF  + ++D+V+WN ++
Sbjct: 248 FALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMV 307

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
             Y Q G  D     S + ++   +  D         I  DV+ W+ ++A YA  G   E
Sbjct: 308 TGYSQIGSFD-----SALSLFKMMQEED---------IKLDVITWSAVIAGYAQKGHGFE 353

Query: 417 ASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK------------------ 453
           A  +F QMQL G+ PN+++  S++     +G L  G+   A                   
Sbjct: 354 ALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLL 413

Query: 454 ------DMFLQMQSL-----------GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
                 DM+ + +S            G   N++TWT +I G  Q+   N+A+  F ++ +
Sbjct: 414 VLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFK 473

Query: 497 --TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS-LVDMYAKCGN 553
             T +KP+  T++CAL AC  +  LR GR +H Y +R++       V + L+DMY+K G+
Sbjct: 474 QKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGD 533

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           I  A+ VFD    + +  + ++++GY MHG   EAL LF  +Q+ G   D ITF  +L A
Sbjct: 534 IDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYA 593

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           CSH+G+V++G+  F  M     + P  EH+ C+V+LL R G L+EA+ +I  M  +P A 
Sbjct: 594 CSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAV 653

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           +  +LLS        EL EY +  L +L  +N G+Y  LSN YA + RW +V+++R +MK
Sbjct: 654 VWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMK 713

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
             G+RK PGCSWIQ  +    F   DRSHP++E+IY  L
Sbjct: 714 HTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLL 752



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 233/499 (46%), Gaps = 81/499 (16%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL-- 142
           +L+ C     +  G  +HA +  NG     N ++   +V  Y +C ALD A ++F  +  
Sbjct: 133 VLKACGEIPSLRHGASVHAIVCANG--LGSNVFICNSIVAMYGRCGALDDAHQMFDEVLE 190

Query: 143 -RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED---GVSPDNFVLPNVLKACGALGWV 198
            +++++ SW +I+    + G S  AL     M       + PD   L N+L AC ++  +
Sbjct: 191 RKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFAL 250

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM---- 254
             G+ VHG+ ++ G    VFV ++L+ MY KC  + EA KVF+G+  ++VV+WN+M    
Sbjct: 251 QHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGY 310

Query: 255 -------------------------------IVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
                                          I GY Q G   EA+ VF +M L G+EP  
Sbjct: 311 SQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNV 370

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMEL-------DNVLGSSIINFYSKVGLLED 336
           V++ S+LS  A++ AL  GKQ HA  + N + L       D ++ + +I+ Y+K      
Sbjct: 371 VTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRV 430

Query: 337 AEVVFSRMVERD--IVTWNLLIASYVQSGQSDVVV----------------ASSIVDMYA 378
           A  +F  +  +D  +VTW ++I  Y Q G+++  +                A ++     
Sbjct: 431 ARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALM 490

Query: 379 KCERIDNAK--QVFNSIILRD------VVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
            C R+   +  +  ++  LR+      + + N L+  Y+  G    A  +F  M+L    
Sbjct: 491 ACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR--- 547

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
            N++SW S++ G+  +G+  EA  +F QMQ LG   + IT+  ++   + +   ++ +++
Sbjct: 548 -NVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIY 606

Query: 491 FQEMLET-GIKPSTTTITC 508
           F +M++  GI P      C
Sbjct: 607 FHDMVKGFGITPGAEHYAC 625



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 160/320 (50%), Gaps = 12/320 (3%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+  +++    EA+D+  +M+    +        LL GC     +  G+Q HA ++KN  
Sbjct: 342 IAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNIL 401

Query: 111 FFARNEYVETKLVV-----FYAKCDALDVASRLFCRL--RVKNVFSWAAIIGLNCRVGLS 163
               N+  +  LV+      YAKC +  VA  +F  +  + KNV +W  +IG   + G +
Sbjct: 402 NLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEA 461

Query: 164 EKALIGFVEM--QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV-FVA 220
             AL  F ++  Q+  + P+ F L   L AC  LG +  GR +H Y L+   +  V +V 
Sbjct: 462 NDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVG 521

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           + LIDMY K GD++ AR VFD M  RNVV+W S++ GY  +G  EEA+ +F +M   G  
Sbjct: 522 NCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFA 581

Query: 281 PTRVSVTSILSASANLDALDEGK-QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA-E 338
              ++   +L A ++   +D+G    H +    G+       + +++   + G L +A E
Sbjct: 582 VDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAME 641

Query: 339 VVFSRMVERDIVTWNLLIAS 358
           ++ +  +E   V W  L+++
Sbjct: 642 LIKNMSMEPTAVVWVALLSA 661


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/790 (30%), Positives = 405/790 (51%), Gaps = 99/790 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+     R +  G++IHARI+  G      E +   L+  Y KC++L     +F RL V
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLG----LEEELGNHLLRLYLKCESLGDVEEVFSRLEV 90

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++  SW  II      G +++A+  F  MQ++GV  D      VLKAC  LG +  GR++
Sbjct: 91  RDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSI 150

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H ++++ G +G   +A+ L+ +YG CG +  A  +F+ M  R++V+WN+ I    Q+G  
Sbjct: 151 HAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDL 209

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           + A+ +F  M LEGV P R+++   LS  A +    + +  H++   +G+E   V+ +++
Sbjct: 210 DMALELFQRMQLEGVRPARITLVITLSVCAKIR---QARAIHSIVRESGLEQTLVVSTAL 266

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------------- 364
            + Y+++G L+ A+ VF R  ERD+V+WN ++ +Y Q G                     
Sbjct: 267 ASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSK 326

Query: 365 -----------------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
                                         D+V+ ++++DMY +C   + A+ +F  I  
Sbjct: 327 VTLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIP- 385

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP------------------------ 431
            + V WNT++A  +  G+   A  LF +MQLEG++P                        
Sbjct: 386 GNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAE 445

Query: 432 ------NIIS---------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
                  I+S           +V+  +   G ++EA   F Q  ++  + ++++W  +IS
Sbjct: 446 GRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASF-QRGAMEDRHDVVSWNAIIS 504

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
            L+Q+  G  A+ FF+ M   G+ P+  T    L AC   A+L  G  +H +L    +  
Sbjct: 505 SLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMES 564

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
              + T+L  MY +CG++  A+ +F+ ++  +++ ++NAMI+ Y+ +GLA EAL LF  +
Sbjct: 565 NVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRM 624

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           QQ+G  PD  +F ++L+ACSH GL +EG E+F  M   + + PS +H+ C V++L R G 
Sbjct: 625 QQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGW 684

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           L +A  +I  M   P   +  +LL  C K  + +     +  + +L+P +   YV LSN 
Sbjct: 685 LADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNI 744

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            A +G+W+E ++VR  M+ +GLRK  G SWI+I   +H FVA DRSHP++EEIY  L  L
Sbjct: 745 LAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERL 804

Query: 776 GMHVRLVSKV 785
              +R +  V
Sbjct: 805 HAEIREIGYV 814


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 243/738 (32%), Positives = 381/738 (51%), Gaps = 83/738 (11%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y +  +L  A  LF  L++    +W  +I     +G    AL+ +++M   GVSPD +  
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
           P V+KAC  L  V  G+ VH  V  +G    VFV SSLI +Y + G L +A+ +FD +  
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           ++ V WN M+ GYV+NG +  AI++F EM    ++P  V+   +LS  A+   LD G Q 
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-- 363
           H +AV  G+ELD+ + ++++  YSK   L+ A  +F    + D+V+WN +I+ YVQ+G  
Sbjct: 182 HGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLM 241

Query: 364 ---------------QSDVVVASS-----------------------------------I 373
                          + D +  +S                                   +
Sbjct: 242 GEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSAL 301

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           +D+Y KC  ++ A+++       D V+  T+++ Y   G++ EA   F  +  E + P  
Sbjct: 302 IDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTS 361

Query: 434 ISWNSVILGFLRNGQMNEAK----------------------DMFLQMQSLGV------- 464
           ++++S+   F     +N  K                      DM+ +   L +       
Sbjct: 362 VTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNR 421

Query: 465 --QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
             + + I W ++I+  +QN    EAI  F++M   G +    +I+ ALSAC ++ +L  G
Sbjct: 422 ITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYG 481

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           + IHG +I+  L       +SL+DMYAKCGN++ ++RVFD    +    +N++IS Y  H
Sbjct: 482 KEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNH 541

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G   E LALF  + + GI PD +TF  I++AC HAG V+EG+  +  M  ++ +   MEH
Sbjct: 542 GDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEH 601

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           + CV ++  R G LDEA   I +MP  PDA + G+LL  C      ELAE  S+HL  L+
Sbjct: 602 YACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLD 661

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           P N G YV L+N  A +G+W +V +VR IMKE+G+RK PG SWI++    H+FVA D SH
Sbjct: 662 PLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSH 721

Query: 763 PKTEEIYATLALLGMHVR 780
           P T +IY+ L  L + ++
Sbjct: 722 PLTAQIYSVLDSLLLELK 739



 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 154/611 (25%), Positives = 263/611 (43%), Gaps = 101/611 (16%)

Query: 66  LLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV 123
           LL  +K     + P+ Y    +++ C   + +  G+ +H  +   G     + +V + L+
Sbjct: 43  LLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMG--LKEDVFVGSSLI 100

Query: 124 VFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
             YA+   L  A  LF  +  K+   W  ++    + G S  A+  F+EM+   + P++ 
Sbjct: 101 KLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSV 160

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
               VL  C +   +  G  +HG  +  G +    VA++L+ MY KC  L+ ARK+FD  
Sbjct: 161 TFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTS 220

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
              ++V+WN +I GYVQNGL  EA  +F  M   G++P  ++  S L     L +L   K
Sbjct: 221 PQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCK 280

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
           + H   + + + LD  L S++I+ Y K   +E A+ +  +    D V    +I+ YV +G
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNG 340

Query: 364 QSD-----------------VVVASSI--------------------------------- 373
           ++                   V  SSI                                 
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGS 400

Query: 374 --VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
             +DMYAKC R+D A +VFN I  +D + WN+++ + +  GR GEA  LF QM +EG   
Sbjct: 401 AILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRY 460

Query: 432 NIISWNS--------------------VILGFLRN---------------GQMNEAKDMF 456
           + +S +                     +I G LR+               G +N ++ +F
Sbjct: 461 DCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVF 520

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            +MQ    + N ++W ++IS    +    E +  F EML  GI+P   T    +SAC   
Sbjct: 521 DRMQ----ERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHA 576

Query: 517 ASLRNG-RAIHGYLIRHDLCLPTPI--VTSLVDMYAKCGNIHQAKRVFDISP-SKELPVY 572
             +  G R  H  L+  +  +P  +     + DM+ + G + +A    +  P   +  V+
Sbjct: 577 GQVDEGIRYYH--LMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVW 634

Query: 573 NAMISGYAMHG 583
             ++    +HG
Sbjct: 635 GTLLGACHIHG 645



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/524 (24%), Positives = 247/524 (47%), Gaps = 84/524 (16%)

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY + G L++A+ +F  +      AWN MI G+   G    A+  + +M   GV P + +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
              ++ A   L ++  GK  H    + G++ D  +GSS+I  Y++ G L DA+ +F  + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 346 ERDIVTWNLLIASYVQSGQS---------------------------------------- 365
           ++D V WN+++  YV++G S                                        
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 366 ------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                       D  VA++++ MY+KC+ +  A+++F++    D+V WN +++ Y   G 
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGL 240

Query: 414 SGEASRLFYQMQLEGISPNIISWNS--------------------------VILGFLRNG 447
            GEA  LF  M   GI P+ I++ S                          V+  FL++ 
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 448 QMN---EAKDMFLQMQSLGVQPNL--ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
            ++   + +D+ +  + L    +   +  TT+ISG   N    EA+  F+ +++  +KP+
Sbjct: 301 LIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
           + T +    A   +A+L  G+ +HG +I+  L     + ++++DMYAKCG +  A RVF+
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFN 420

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               K+   +N+MI+  + +G   EA+ LF+ +  +G   D ++ +  L+AC++   ++ 
Sbjct: 421 RITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHY 480

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           G E+  G+     ++  +     ++++ ++CGNL+ + RV   M
Sbjct: 481 GKEIH-GLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRM 523



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 209/442 (47%), Gaps = 54/442 (12%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           A+ +  EM+    +     +  +L  C  +  +  G Q+H   +  G     +  V   L
Sbjct: 143 AIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCG--LELDSPVANTL 200

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  Y+KC  L  A +LF      ++ SW  II    + GL  +A   F  M   G+ PD+
Sbjct: 201 LAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDS 260

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
               + L     L  +   + +HGY+++      VF+ S+LID+Y KC D+E A+K+   
Sbjct: 261 ITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQ 320

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
             + + V   +MI GYV NG N+EA+  F  +  E ++PT V+ +SI  A A L AL+ G
Sbjct: 321 SSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLG 380

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           K+ H   +   ++    +GS+I++ Y+K G L+ A  VF+R+ E+D + WN +I S  Q+
Sbjct: 381 KELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQN 440

Query: 363 G----------------------------------------------------QSDVVVA 370
           G                                                    +SD+   
Sbjct: 441 GRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAE 500

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           SS++DMYAKC  ++ +++VF+ +  R+ V WN++++AY + G   E   LF++M   GI 
Sbjct: 501 SSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQ 560

Query: 431 PNIISWNSVILGFLRNGQMNEA 452
           P+ +++  +I      GQ++E 
Sbjct: 561 PDHVTFLGIISACGHAGQVDEG 582


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/776 (31%), Positives = 410/776 (52%), Gaps = 88/776 (11%)

Query: 82  YGELLQGCVYKR-DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
           Y  +L+GC       +  ++IHAR + +G  +  + +V   L+  Y K   L+ A ++F 
Sbjct: 172 YAGVLRGCGGGDVPFHCVEKIHARTITHG--YENSLFVCNPLIDLYFKNGFLNSAKKVFD 229

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
            L+ ++  SW A++    + G  E+A++ F +M   GV P  ++  +VL AC  + +   
Sbjct: 230 GLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKV 289

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G  +HG VLK GF    +V ++L+ +Y + G+   A +VF+ M+ R+ V++NS+I G  Q
Sbjct: 290 GEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQ 349

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            G +++A+ +F +M L+ ++P  V+V S+LSA +++ AL  GKQ H+ A+  GM  D +L
Sbjct: 350 QGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIIL 409

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY--------------------- 359
             ++++ Y K   ++ A   F      ++V WN+++ +Y                     
Sbjct: 410 EGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGI 469

Query: 360 ------------------------------VQSG-QSDVVVASSIVDMYAKCERIDNAKQ 388
                                         +++G Q +V V+S ++DMYAK  ++D+A +
Sbjct: 470 EPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALK 529

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGF 443
           +F  +  +DVV W  ++A YA   +  EA  LF +MQ +GI  + I + S I     +  
Sbjct: 530 IFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQA 589

Query: 444 LRNGQMNEA---------------------------KDMFLQMQSLGVQPNLITWTTLIS 476
           L  GQ   A                           +D +     +  + N I+W +LIS
Sbjct: 590 LNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDN-ISWNSLIS 648

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           G  Q+    EA+  F +M + G + ++ T   A+SA  +VA+++ G+ IH  +I+     
Sbjct: 649 GFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDS 708

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
            T +   L+ +YAKCGNI  A+R F   P K    +NAM++GY+ HG   +AL+LF++++
Sbjct: 709 ETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMK 768

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           Q G+ P+ +TF  +L+ACSH GLV+EG++ F  M   H + P  EH+ CVV+LL R G L
Sbjct: 769 QLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLL 828

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
             A R +  MP  PDA +  +LLS C+     ++ E+ + HLL+LEP +   YV LSN Y
Sbjct: 829 SRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMY 888

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           A +G+W    + R +MK++G++K PG SWI++   +H F A D+ HP  ++IY  L
Sbjct: 889 AVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYL 944



 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 189/695 (27%), Positives = 323/695 (46%), Gaps = 99/695 (14%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
            ++ L  M+ R  +   + Y  LL GC+       G ++H +ILK G  F     +  +L
Sbjct: 52  GINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMG--FCAEVVLCERL 109

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  Y     LD A  +F  + V+ +  W  ++       ++ + L  F  M ++ V PD 
Sbjct: 110 MDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDE 169

Query: 183 FVLPNVLKACGALGWVGFG--RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
                VL+ CG  G V F     +H   +  G++  +FV + LID+Y K G L  A+KVF
Sbjct: 170 RTYAGVLRGCGG-GDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVF 228

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           DG+  R+ V+W +M+ G  Q+G  EEA+ +F +M   GV PT    +S+LSA   ++   
Sbjct: 229 DGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYK 288

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G+Q H + +  G  L+  + ++++  YS++G    AE VF+ M++RD V++N LI+   
Sbjct: 289 VGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLS 348

Query: 361 QSG----------------------------------------------------QSDVV 368
           Q G                                                     SD++
Sbjct: 349 QQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDII 408

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           +  +++D+Y KC  I  A + F S    +VVLWN +L AY  L    E+ ++F QMQ+EG
Sbjct: 409 LEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEG 468

Query: 429 ISPNIISWNSVI---------------------LGFLRN--------------GQMNEAK 453
           I PN  ++ S++                      GF  N              G+++ A 
Sbjct: 469 IEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHAL 528

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +F +++    + ++++WT +I+G  Q+    EA+  F+EM + GI         A+SAC
Sbjct: 529 KIFRRLK----EKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISAC 584

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
             + +L  G+ IH             +  +LV +YA+CG +  A   FD   SK+   +N
Sbjct: 585 AGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWN 644

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF-S 632
           ++ISG+A  G   EAL+LF  + + G + +S TF   ++A ++   V  G ++   +  +
Sbjct: 645 SLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKT 704

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
            H  +  + +   ++ L ++CGN+D+A R    MP
Sbjct: 705 GHDSETEVSN--VLITLYAKCGNIDDAERQFFEMP 737



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 119/286 (41%), Gaps = 39/286 (13%)

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
            I F   M E G++ ++ T    L  C       +G  +HG +++   C    +   L+D
Sbjct: 52  GINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMD 111

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           +Y   G++  A  VFD  P + L  +N ++  +    +A   L LF+ + Q+ + PD  T
Sbjct: 112 LYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERT 171

Query: 607 FTNILNACS------------HAGLVNEGLE--LFV------------------GMFSDH 634
           +  +L  C             HA  +  G E  LFV                   +F   
Sbjct: 172 YAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGL 231

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD---PDAHIIGSLLSTCVKSNETELA 691
           Q + S+  +  +++ LS+ G  +EA+ +   M      P  +I  S+LS C K    ++ 
Sbjct: 232 QKRDSVS-WVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVG 290

Query: 692 EYISEHLLQLEPDNPGNYV--ALSNAYAASGRWNEVSQVRDIMKEK 735
           E +   +L+ +  +   YV  AL   Y+  G +    QV + M ++
Sbjct: 291 EQLHGLVLK-QGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQR 335


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/739 (31%), Positives = 395/739 (53%), Gaps = 37/739 (5%)

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           ++ +A+  L  M  +      + Y   L+ C+  R    G  +H ++ ++      +   
Sbjct: 46  RLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSD--LQLDSVT 103

Query: 119 ETKLVVFYAKCDALDVASRLFCRL-RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177
              L+  Y+KC   + A+ +F  +   +++ SW+A++       +  +AL+ FV+M E+G
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF---DGCVFVASSLIDMYGKC-GDL 233
             P+ +      +AC    +V  G ++ G+V+K G+   D CV     LIDM+ K  GDL
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCV--GCGLIDMFVKGRGDL 221

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
             A KVF+ M  RN V W  MI   +Q G   EAI +F EM L G EP R +++ ++SA 
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISAC 281

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV---GLLEDAEVVFSRMVERDIV 350
           AN++ L  G+Q H+ A+ +G+ LD  +G  +IN Y+K    G +  A  +F ++++ ++ 
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVF 341

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV----LWNTLLA 406
           +W  +I  YVQ G  D                 + A  +F  +IL  V+     +++ L 
Sbjct: 342 SWTAMITGYVQKGGYD-----------------EEALDLFRGMILTHVIPNHFTFSSTLK 384

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
           A A+L       ++F      G S      NS+I  + R+G++++A+  F     +  + 
Sbjct: 385 ACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAF----DILFEK 440

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
           NLI++ T+I    +N    EA+  F E+ + G+  S  T    LS    + ++  G  IH
Sbjct: 441 NLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIH 500

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
             +I+  L L   +  +L+ MY++CGNI  A +VF+    + +  + ++I+G+A HG A 
Sbjct: 501 ARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFAT 560

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
           +AL LF  + ++G+ P+ +T+  +L+ACSH GLVNEG + F  M+++H V P MEH+ C+
Sbjct: 561 QALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACM 620

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           V++L R G+L EA++ I +MP   DA +  + L  C      EL ++ ++ +++ EP +P
Sbjct: 621 VDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDP 680

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTE 766
             Y+ LSN YA++ +W+EVS +R  MKEK L K  GCSW+++  ++H F   D SHPK  
Sbjct: 681 AAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAA 740

Query: 767 EIYATLALLGMHVRLVSKV 785
           EIY  L  L + ++ +  V
Sbjct: 741 EIYDELQNLSVKIKKLGYV 759



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 134/567 (23%), Positives = 240/567 (42%), Gaps = 105/567 (18%)

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           ++  + NG   +AI     M  +G  P   + +  L       + D G   H     + +
Sbjct: 38  LIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDL 97

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASY-------------- 359
           +LD+V  +S+I+ YSK G  E A  +F  M   RD+++W+ +++ +              
Sbjct: 98  QLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFV 157

Query: 360 -------------------------------------VQSG--QSDVVVASSIVDMYAKC 380
                                                V++G  QSDV V   ++DM+ K 
Sbjct: 158 DMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKG 217

Query: 381 E-RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              + +A +VF  +  R+ V W  ++      G +GEA  LF +M L G  P+  + + V
Sbjct: 218 RGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGV 277

Query: 440 I-----------------------LGFLR---------------NGQMNEAKDMFLQMQS 461
           I                       L   R               +G M  A+ +F Q+  
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI-- 335

Query: 462 LGVQPNLITWTTLISGLTQN-SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
             +  N+ +WT +I+G  Q      EA+  F+ M+ T + P+  T +  L AC ++A+LR
Sbjct: 336 --LDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALR 393

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            G  +  + ++        +  SL+ MYA+ G I  A++ FDI   K L  YN +I  YA
Sbjct: 394 IGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYA 453

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            +  + EAL LF  ++ +G+   + TF ++L+  +  G + +G ++   +     +K + 
Sbjct: 454 KNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQ 512

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG--SLLSTCVKSN-ETELAEYISEH 697
                ++++ SRCGN++ A +V   M    D ++I   S+++   K    T+  E   + 
Sbjct: 513 SVCNALISMYSRCGNIESAFQVFEDM---EDRNVISWTSIITGFAKHGFATQALELFHKM 569

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNE 724
           L +    N   Y+A+ +A +  G  NE
Sbjct: 570 LEEGVRPNLVTYIAVLSACSHVGLVNE 596



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 16/227 (7%)

Query: 37  DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMY 96
           D  +E    SY   I + +K     EA++L  E++ +        +  LL G      + 
Sbjct: 435 DILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIG 494

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
            G+QIHAR++K+G     N+ V   L+  Y++C  ++ A ++F  +  +NV SW +II  
Sbjct: 495 KGEQIHARVIKSG--LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITG 552

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-------RAVHGYVL 209
             + G + +AL  F +M E+GV P+      VL AC  +G V  G          HG + 
Sbjct: 553 FAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIP 612

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI 255
           ++    C      ++D+ G+ G L EA +  + M  + + + W + +
Sbjct: 613 RMEHYAC------MVDILGRSGSLSEAIQFINSMPYKADALVWRTFL 653


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/691 (31%), Positives = 364/691 (52%), Gaps = 83/691 (12%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           +   G   D++    +L++C     +  G+ VH ++L+ G    V++ ++L+ +Y  CG 
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS 78

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           + EAR++FD    ++VV+WN MI GY   GL +EA  +F  M  E +EP + +  SILSA
Sbjct: 79  VNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSA 138

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            ++   L+ G++ H   +  G+  D  +G+++I+ Y+K G + DA  VF  M  RD V+W
Sbjct: 139 CSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 198

Query: 353 NLLIASYVQSG------------------------------------------------- 363
             L  +Y +SG                                                 
Sbjct: 199 TTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVE 258

Query: 364 ---QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
               SDV V++++  MY KC    +A++VF  +  RDV+ WNT++  + D G+  EA   
Sbjct: 259 SEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGT 318

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV---------------- 464
           F++M  EG++P+  ++ +V+    R G +   K++  +    G+                
Sbjct: 319 FHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSK 378

Query: 465 ---------------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
                          + ++++WTTL+          E+   F++ML+ G+K +  T  C 
Sbjct: 379 AGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCV 438

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L AC++  +L+ G+ IH  +++  L     +  +L+ MY KCG++  A RVF+    +++
Sbjct: 439 LKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDV 498

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +N +I G   +G  +EAL  ++ ++ +G+ P++ TF N+L+AC    LV EG   F  
Sbjct: 499 VTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAF 558

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M  D+ + P+ +H+ C+V++L+R G+L EA  VILT+P  P A + G+LL+ C      E
Sbjct: 559 MSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVE 618

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           + E  +EH L+LEP N G YV+LS  YAA+G W +V+++R  MKE+G++K PG SWI+I 
Sbjct: 619 IGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIA 678

Query: 750 EELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            E+H FVA D+SHP+T+EIYA L  L   ++
Sbjct: 679 GEVHSFVARDQSHPRTQEIYAELETLKKQMK 709


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/734 (31%), Positives = 392/734 (53%), Gaps = 28/734 (3%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  S+     EA+ L  EM        P ++  +L GC   +    G+Q+HA +
Sbjct: 180 SWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALV 239

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K G   +   YV   LV  Y++      A ++F +++ K+  S+ ++I    + G S+ 
Sbjct: 240 FKYGS--SLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDG 297

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  F +M+ D + PD   + ++L AC + G +  G  +H YV+K G    + V  +L+D
Sbjct: 298 ALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLD 357

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y  C D++ A ++F      NVV WN M+V + +     E+ R+F +M ++G+ P + +
Sbjct: 358 LYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFT 417

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
             SIL    ++ ALD G+Q H   +  G + +  + S +I+ Y+K G L+ A V+   + 
Sbjct: 418 YPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT 477

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK----CERIDNAKQVFNSIILRDVVLW 401
           E                   DVV  ++++  YA+     E + + K++ N  I  D + +
Sbjct: 478 E------------------DDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGF 519

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
           ++ ++A A +    +  ++  Q  + G S ++   N+++  + R G++ EA   +L+ + 
Sbjct: 520 SSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEA---YLEFEK 576

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
           +  + + I+W  LISG  Q+    +A+  F +M    ++ S  T   A+SA  ++A+++ 
Sbjct: 577 IDAKDS-ISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQ 635

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G+ IH  +I+        +  +L+  YAKCG+I  A+R F   P K    +NAMI+GY+ 
Sbjct: 636 GKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQ 695

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HG   EA+ LF+ ++Q G  P+ +TF  +L+ACSH GLV +GL  F  M  +H + P   
Sbjct: 696 HGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPA 755

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+ CVV+L+SR G L  A + I  MP +PDA I  +LLS C      E+ E+ ++HLL+L
Sbjct: 756 HYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLEL 815

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           EP++   YV LSN YA SG+W+   Q R +M+ +G++K PG SWI++   +H F   DR 
Sbjct: 816 EPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRL 875

Query: 762 HPKTEEIYATLALL 775
           HP  ++IY  LA L
Sbjct: 876 HPLADKIYEFLAEL 889



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 182/686 (26%), Positives = 309/686 (45%), Gaps = 87/686 (12%)

Query: 70  MKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129
           M+ R      + Y  LL  C+    +   +++H +ILK G  F     +  KLV  Y   
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLG--FGNESVLCNKLVDVYFAL 58

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
             LD   ++F  +  ++V SW  II       +S + L  F  M E+ VSP      +VL
Sbjct: 59  GDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVL 118

Query: 190 KAC-GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           +AC G    + +   +H  ++  G      +++ LI +Y K G +  ARKVFD +  ++ 
Sbjct: 119 RACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDS 178

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
           V+W +MI G+ QNG  EEAI +F EM   G+ PT    +S+LS    +   D G+Q HA+
Sbjct: 179 VSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHAL 238

Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG----- 363
               G  L+  + ++++  YS++     AE VFS+M  +D V++N LI+   Q G     
Sbjct: 239 VFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGA 298

Query: 364 -----------------------------------------------QSDVVVASSIVDM 376
                                                           SD++V  +++D+
Sbjct: 299 LELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDL 358

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           Y  C  I  A ++F +    +VVLWN +L A+  L    E+ R+F QMQ++G+ PN  ++
Sbjct: 359 YVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTY 418

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPN----------------------------- 467
            S++      G ++  + +  Q+   G Q N                             
Sbjct: 419 PSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTE 478

Query: 468 --LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
             +++WT LISG  Q++   EA+  F+EML  GI+      + A+SAC  + +L  GR I
Sbjct: 479 DDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQI 538

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           H             I  +LV +YA+CG I +A   F+   +K+   +N +ISG+A  G  
Sbjct: 539 HAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYC 598

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            +AL +F  + +  ++    TF + ++A ++   + +G ++   M         +E    
Sbjct: 599 EDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIH-AMIIKRGFDSDIEVSNA 657

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPD 671
           ++   ++CG++++A R    MP   D
Sbjct: 658 LITFYAKCGSIEDARREFCEMPEKND 683



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 115/282 (40%), Gaps = 50/282 (17%)

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M   GI  +  T    L  C +  SL   + +HG +++      + +   LVD+Y   G+
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +    +VF+  P++ +  ++ +ISG+    ++   L LF  + ++ + P  I+F ++L A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 614 CS------------HAGLVNEGL-------ELFVGMFS------------DHQVKPSMEH 642
           CS            HA ++  GL          +G+++            D+        
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS 180

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCD---PDAHIIGSLLSTCVKSNETELAE------- 692
           +  +++  S+ G  +EA+ +   M      P  ++  S+LS C K    ++ E       
Sbjct: 181 WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVF 240

Query: 693 --------YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726
                   Y+   L+ L    P N+V+    ++     +EVS
Sbjct: 241 KYGSSLETYVCNALVTLYSRMP-NFVSAEKVFSKMQSKDEVS 281


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 261/784 (33%), Positives = 399/784 (50%), Gaps = 95/784 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNE---YVETKLVVFYAKC----DALDVASR 137
           LL+GCV    +  G +IHAR + +G   A       ++T+LV  Y       DA+ V S 
Sbjct: 42  LLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSS 101

Query: 138 LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP--DNFVLPNVLKACGAL 195
           L  R        W  +I      G    A++ +V+M     SP  D   LP V+K+C AL
Sbjct: 102 L-PRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAAL 160

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
           G +  GR VH     +G D  ++V S+LI MY   G L+ AR+VFDGM  R+ V WN M+
Sbjct: 161 GALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMM 220

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            GYV+ G    A+ +F  M   G +P   ++   LS  A    L  G Q H +AV  G+E
Sbjct: 221 DGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLE 280

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------ 363
            +  + +++++ Y+K   LE+A  +F  M   D+VTWN +I+  VQ+G            
Sbjct: 281 PEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDM 340

Query: 364 ----------------------------------------QSDVVVASSIVDMYAKCERI 383
                                                     DV + S++VD+Y KC  +
Sbjct: 341 QKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDV 400

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS-RLFYQMQLEGISPNIISWNSVI-- 440
             A+ VF++    DVV+ +T+++ Y  L R  EA+ ++F  +   GI PN +   S +  
Sbjct: 401 RMAQNVFDATKSIDVVIGSTMISGYV-LNRMSEAAVKMFRYLLALGIKPNAVMVASTLPA 459

Query: 441 ---LGFLRNGQM-----------------NEAKDMFLQMQSLGVQPNL---------ITW 471
              +  +R GQ                  +   DM+ +   L +   +         +TW
Sbjct: 460 CASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTW 519

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
            ++IS   QN    EA+  F++M+  G+K +  TI+  LSAC  + ++  G+ IHG +I+
Sbjct: 520 NSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIK 579

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
             +       ++L+DMY KCGN+  A RVF+  P K    +N++IS Y  HGL  E++ L
Sbjct: 580 GPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDL 639

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
              +Q++G   D +TF  +++AC+HAG V EGL LF  M  ++ ++P +EH  C+V+L S
Sbjct: 640 LCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYS 699

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G LD+A++ I  MP  PDA I G+LL  C      ELAE  S+ L +L+P N G YV 
Sbjct: 700 RAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVL 759

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
           +SN  A +GRW+ VS++R +MK+K ++K PG SW+ +    H+FVA D++HP +EEIY +
Sbjct: 760 MSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVNNTSHLFVAADKNHPDSEEIYMS 819

Query: 772 LALL 775
           L  L
Sbjct: 820 LKSL 823



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 15/225 (6%)

Query: 23  LKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY 82
           L LS    +K+   D        ++   ISS ++  +  EA+DL  +M     +      
Sbjct: 501 LDLSHYMFSKMSAKDEV------TWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTI 554

Query: 83  GELLQGCVYKRDMYTGQQIHARILK---NGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
             +L  C     +Y G++IH  I+K     D FA     E+ L+  Y KC  L++A R+F
Sbjct: 555 SSILSACAGLPAIYYGKEIHGIIIKGPIRADLFA-----ESALIDMYGKCGNLELALRVF 609

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +  KN  SW +II      GL ++++     MQE+G   D+     ++ AC   G V 
Sbjct: 610 EHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQ 669

Query: 200 FG-RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
            G R       +   +  V   S ++D+Y + G L++A +    M
Sbjct: 670 EGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADM 714


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 242/730 (33%), Positives = 376/730 (51%), Gaps = 83/730 (11%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y +  +L  A  LF  L++    +W  +I     +G    AL+ +++M   GVSPD +  
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
           P V+KAC  L  V  G+ VH  V  +G    VFV SSLI +Y + G L +A+ +FD +  
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           ++ V WN M+ GYV+NG +  AI++F EM    ++P  V+   +LS  A+   LD G Q 
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-- 363
           H +AV  G+ELD+ + ++++  YSK   L+ A  +F  + + D+V+WN +I+ YVQ+G  
Sbjct: 182 HGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLM 241

Query: 364 ---------------QSDVVVASS-----------------------------------I 373
                          + D +  +S                                   +
Sbjct: 242 GEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSAL 301

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           +D+Y KC  ++ A++        D V+  T+++ Y   G++ EA   F  +  E + P  
Sbjct: 302 IDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTS 361

Query: 434 ISWNSVILGFLRNGQMNEAK----------------------DMFLQMQSLGV------- 464
           ++++S+   F     +N  K                      DM+ +   L +       
Sbjct: 362 VTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNR 421

Query: 465 --QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
             + + I W ++I+  +QN    EAI  F++M   G +    +I+ ALSAC ++ +L  G
Sbjct: 422 ITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYG 481

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           + IHG +I+  L       +SL+DMYAKCGN++ ++RVFD    K    +N++IS Y  H
Sbjct: 482 KEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNH 541

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G   E LALF  + + GI PD +TF  I++AC HAG V+EG+  +  M  ++ +   MEH
Sbjct: 542 GDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEH 601

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           + CV ++  R G L EA   I +MP  PDA + G+LL  C      ELAE  S+HL  L+
Sbjct: 602 YACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLD 661

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           P N G YV L+N  A +G+W +V +VR IMKE+G+RK PG SWI++    H+FVA D SH
Sbjct: 662 PLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSH 721

Query: 763 PKTEEIYATL 772
           P T +IY+ L
Sbjct: 722 PLTAQIYSVL 731



 Score =  192 bits (487), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 154/611 (25%), Positives = 265/611 (43%), Gaps = 101/611 (16%)

Query: 66  LLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV 123
           LL  +K     + P+ Y    +++ C   + +  G+ +H  +   G     + +V + L+
Sbjct: 43  LLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMG--LKEDVFVGSSLI 100

Query: 124 VFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
             YA+   L  A  LF  +  K+   W  ++    + G S  A+  F+EM+   + P++ 
Sbjct: 101 KLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSV 160

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
               VL  C +   +  G  +HG  +  G +    VA++L+ MY KC  L+ ARK+FD +
Sbjct: 161 TFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTL 220

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
              ++V+WN +I GYVQNGL  EA  +F  M   G++P  ++  S L     L +L   K
Sbjct: 221 PQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCK 280

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
           + H   + + + LD  L S++I+ Y K   +E A+    +    D V    +I+ YV +G
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNG 340

Query: 364 Q------------------SDVVVAS---------------------------------- 371
           +                  + V  +S                                  
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGS 400

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
           +I+DMYAKC R+D A +VFN I  +D + WN+++ + +  GR GEA  LF QM +EG   
Sbjct: 401 AILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRY 460

Query: 432 NIISWNS--------------------VILGFLRN---------------GQMNEAKDMF 456
           + +S +                     +I G LR+               G +N ++ +F
Sbjct: 461 DCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVF 520

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            +MQ    + N ++W ++IS    +    E +  F EML  GI+P   T    +SAC   
Sbjct: 521 DRMQ----EKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHA 576

Query: 517 ASLRNG-RAIHGYLIRHDLCLPTPI--VTSLVDMYAKCGNIHQAKRVFDISP-SKELPVY 572
             +  G R  H  L+  +  +P  +     + DM+ + G +H+A    +  P   +  V+
Sbjct: 577 GQVDEGIRYYH--LMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVW 634

Query: 573 NAMISGYAMHG 583
             ++    +HG
Sbjct: 635 GTLLGACHIHG 645



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 131/524 (25%), Positives = 245/524 (46%), Gaps = 84/524 (16%)

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY + G L++A+ +F  +      AWN MI G+   G    A+  + +M   GV P + +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
              ++ A   L ++  GK  H    + G++ D  +GSS+I  Y++ G L DA+ +F  + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 346 ERDIVTWNLLIASYVQSGQS---------------------------------------- 365
           ++D V WN+++  YV++G S                                        
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 366 ------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                       D  VA++++ MY+KC+ +  A+++F+++   D+V WN +++ Y   G 
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGL 240

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK-------------DMFLQMQ 460
            GEA  LF  M   GI P+ I++ S +        +   K             D+FL+  
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 461 SLGV----------QPNL--------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
            + +          Q NL        +  TT+ISG   N    EA+  F+ +++  +KP+
Sbjct: 301 LIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
           + T +    A   +A+L  G+ +HG +I+  L     + ++++DMYAKCG +  A RVF+
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFN 420

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               K+   +N+MI+  + +G   EA+ LF+ +  +G   D ++ +  L+AC++   ++ 
Sbjct: 421 RITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHY 480

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           G E+  G+     ++  +     ++++ ++CGNL+ + RV   M
Sbjct: 481 GKEIH-GLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRM 523



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 209/442 (47%), Gaps = 54/442 (12%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           A+ +  EM+    +     +  +L  C  +  +  G Q+H   +  G     +  V   L
Sbjct: 143 AIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCG--LELDSPVANTL 200

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  Y+KC  L  A +LF  L   ++ SW  II    + GL  +A   F  M   G+ PD+
Sbjct: 201 LAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDS 260

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
               + L     L  +   + +HGY+++      VF+ S+LID+Y KC D+E A+K    
Sbjct: 261 ITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQ 320

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
             + + V   +MI GYV NG N+EA+  F  +  E ++PT V+ +SI  A A L AL+ G
Sbjct: 321 SSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLG 380

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           K+ H   +   ++    +GS+I++ Y+K G L+ A  VF+R+ E+D + WN +I S  Q+
Sbjct: 381 KELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQN 440

Query: 363 G----------------------------------------------------QSDVVVA 370
           G                                                    +SD+   
Sbjct: 441 GRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAE 500

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           SS++DMYAKC  ++ +++VF+ +  ++ V WN++++AY + G   E   LF++M   GI 
Sbjct: 501 SSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQ 560

Query: 431 PNIISWNSVILGFLRNGQMNEA 452
           P+ +++  +I      GQ++E 
Sbjct: 561 PDHVTFLGIISACGHAGQVDEG 582


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/830 (29%), Positives = 405/830 (48%), Gaps = 127/830 (15%)

Query: 74  NFQIGP---EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD 130
           ++Q  P   + +  + Q C  ++ +  G+Q HAR++     F    +V   L+  Y KC 
Sbjct: 34  SYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTE--FKPTVFVTNCLIQMYIKCS 91

Query: 131 ALD-------------------------------VASRLFCRLRVKNVFSWAAIIGLNCR 159
            L+                               VA +LF  +  ++V SW ++I     
Sbjct: 92  DLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLH 151

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            G   K +  F++M   G   D      VLK+C +L   G G  +HG  +K+GFD  V  
Sbjct: 152 NGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVT 211

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            S+L+DMY KC  L+ + + F  M  +N V+W+++I G VQN      + +F EM   GV
Sbjct: 212 GSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGV 271

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
             ++ +  S+  + A L AL  G Q H  A+      D V+G++ ++ Y K   L DA+ 
Sbjct: 272 GVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQK 331

Query: 340 VFSRMVERDIVTWNLLIASYVQSG------------------------------------ 363
           +F+ +   ++ ++N +I  Y +S                                     
Sbjct: 332 LFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKG 391

Query: 364 ----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                           QS++ VA++I+DMY KC  +  A  VF  ++ RD V WN ++AA
Sbjct: 392 DLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAA 451

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----------------------LG-- 442
           +   G   +   LF  M   G+ P+  ++ SV+                       LG  
Sbjct: 452 HEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLD 511

Query: 443 ----------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
                     + + G M +A+ +  ++     +  +++W  +ISG +      EA   F 
Sbjct: 512 SFVGIALIDMYSKCGMMEKAEKLHDRL----AEQTVVSWNAIISGFSLQKQSEEAQKTFS 567

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           +MLE G+ P   T    L  C ++ ++  G+ IH  +I+ +L     I ++LVDMY+KCG
Sbjct: 568 KMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG 627

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           N+   + +F+ +P+++   +NAM+ GYA HGL  EAL +F+ +Q + + P+  TF  +L 
Sbjct: 628 NMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLR 687

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           AC H GLV +GL  F  M S++ + P +EH+ CVV+++ R G + +AL +I  MP + DA
Sbjct: 688 ACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADA 747

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            I  +LLS C      E+AE  +  +LQLEP++   YV LSN YA +G WNEV+++R +M
Sbjct: 748 VIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMM 807

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
           +  GL+K PGCSWI+I  E+H F+  D++HP+++EIY  L +L   ++ V
Sbjct: 808 RFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWV 857



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 164/675 (24%), Positives = 299/675 (44%), Gaps = 99/675 (14%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ SL   Y H           R+ +D+  +M           +  +L+ C    D   G
Sbjct: 141 SWNSLISGYLHNGDH-------RKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGG 193

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
            QIH   +K G  F  +    + L+  YAKC  LD + + F  +  KN  SW+AII    
Sbjct: 194 IQIHGLAVKMG--FDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCV 251

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +       L  F EMQ+ GV        +V ++C  L  +  G  +HG+ LK  F   V 
Sbjct: 252 QNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVV 311

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           + ++ +DMY KC +L +A+K+F+ +   N+ ++N++IVGY ++    EA+ +F  +   G
Sbjct: 312 IGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSG 371

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           +    VS++    A A +    EG Q H +++ +  + +  + ++I++ Y K G L +A 
Sbjct: 372 LGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEAC 431

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQS--------------------------------- 365
           +VF  MV RD V+WN +IA++ Q+G                                   
Sbjct: 432 LVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQ 491

Query: 366 -------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                              D  V  +++DMY+KC  ++ A+++ + +  + VV WN +++
Sbjct: 492 ALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIIS 551

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LGFLRNGQMNEAK--- 453
            ++   +S EA + F +M   G+ P+  ++ +++          LG   + Q+ + +   
Sbjct: 552 GFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQS 611

Query: 454 ---------DMFLQ---MQSLGV----QPN--LITWTTLISGLTQNSCGNEAILFFQEML 495
                    DM+ +   MQ   +     PN   +TW  ++ G  Q+  G EA+  F+ M 
Sbjct: 612 DAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQ 671

Query: 496 ETGIKPSTTTITCALSACTDVASLRNG-RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
              +KP+  T    L AC  +  +  G    H  L  + L       + +VD+  + G +
Sbjct: 672 LENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQV 731

Query: 555 HQAKRVFDISP-SKELPVYNAMISGYAMHG-LAVEALALFKNLQQKGIDP-DSITFTNIL 611
            +A  + +  P   +  ++  ++S   +HG + V   A +  LQ   ++P DS  +  + 
Sbjct: 732 SKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQ---LEPEDSAAYVLLS 788

Query: 612 NACSHAGLVNEGLEL 626
           N  ++AG+ NE  +L
Sbjct: 789 NIYANAGMWNEVTKL 803


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/793 (30%), Positives = 403/793 (50%), Gaps = 105/793 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+     R +  G++IHARI+  G      E +   L+  Y KC++L     +F RL V
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLG----LEEELGNHLLRLYLKCESLGDVEEVFSRLEV 90

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++  SW  II      G +++A+  F  MQ++GV  D      VLKAC  LG +  GR++
Sbjct: 91  RDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSI 150

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H ++++ G  G   +A+ L+ +YG CG +  A  +F+ M  R++V+WN+ I    Q+G  
Sbjct: 151 HAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDL 209

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI---NGMELDNVLG 321
             A+ +F  M LEGV P R+++   L+  A +      +QA A+  I   +G+E   V+ 
Sbjct: 210 GIALELFQRMQLEGVRPARITLVIALTVCATI------RQAQAIHFIVRESGLEQTLVVS 263

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----------------- 364
           +++ + Y+++G L  A+ VF R  ERD+V+WN ++ +Y Q G                  
Sbjct: 264 TALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIS 323

Query: 365 --------------------------------SDVVVASSIVDMYAKCERIDNAKQVFNS 392
                                            D+V+ ++++DMY +C   + A+ +F  
Sbjct: 324 PSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKR 383

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP--------------------- 431
           I   + V WNT++A  +  G+   A  LF +MQLEG++P                     
Sbjct: 384 IPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARA 442

Query: 432 ---------NIIS---------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
                     I+S           +V+  +   G ++EA   F Q  ++  + ++++W  
Sbjct: 443 MAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASF-QRGAMEDRHDVVSWNA 501

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +IS L+Q+  G  A+ FF+ M   G+ P+  T    L AC   A+L  G  +H +L    
Sbjct: 502 IISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSG 561

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALALF 592
           +     + T+L  MY +CG++  A+ +F+ ++  +++ ++NAMI+ Y+ +GLA EAL LF
Sbjct: 562 MESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLF 621

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
             +QQ+G  PD  +F ++L+ACSH GL +EG E+F  M   + + PS +H+ C V++L R
Sbjct: 622 WRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGR 681

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G L +A  +I  M   P   +  +LL  C K  + +     +  + +L+P +   YV L
Sbjct: 682 AGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVL 741

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           SN  A +G+W+E ++VR  M+ +GLRK  G SWI+I   +H FVA DRSHP++EEIY  L
Sbjct: 742 SNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYREL 801

Query: 773 ALLGMHVRLVSKV 785
             L   +R +  V
Sbjct: 802 ERLHAEIREIGYV 814


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/697 (30%), Positives = 373/697 (53%), Gaps = 95/697 (13%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           + + G   D++    +L++C     +  G+ VH ++L+ G    V++ ++L+ +Y  CG 
Sbjct: 35  LHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGS 94

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           + EAR++FD    ++VV+WN MI GY   GL +EA  +F  M  EG+EP + +  SILSA
Sbjct: 95  VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSA 154

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            ++  AL+ G++ H   +  G+  +  +G+++I+ Y+K G + DA  VF  M  RD V+W
Sbjct: 155 CSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 214

Query: 353 NLLIASYVQSG------------------------------------------------- 363
             L  +Y +SG                                                 
Sbjct: 215 TTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVE 274

Query: 364 ---QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
               SDV V++++  MY KC  + +A++VF  +  RDV+ WNT++    D G+  EA  +
Sbjct: 275 SEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGM 334

Query: 421 FYQMQLEGISPNIISW-----------------------------------NSVILGFLR 445
           F++M  E ++P+ +++                                   N++I  + +
Sbjct: 335 FHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSK 394

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN--EAILFFQEMLETGIKPST 503
            G M +A+ +F +M     + ++++WT L+ G     CG   E+   F++ML+ G++ + 
Sbjct: 395 AGSMKDARQVFDRMP----KRDVVSWTALVGGYAD--CGQVVESFSTFKKMLQQGVEANK 448

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            T  C L AC++  +L+ G+ IH  +++  +     +  +L+ MY KCG++  A RV + 
Sbjct: 449 ITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEG 508

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
             ++++  +N +I G A +G  +EAL  F+ ++ + + P++ TF N+++AC    LV EG
Sbjct: 509 MSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEG 568

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
              F  M  D+ + P+ +H+ C+V++L+R G+L EA  VILTMP  P A + G+LL+ C 
Sbjct: 569 RRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACR 628

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
                E+ E  +E  L+LEP N G YV+LS  YAA+G W +V+++R +MKE+G++K PG 
Sbjct: 629 AHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGR 688

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           SWI++  E+H FVA D+SHP+TEEIY+ L  L   ++
Sbjct: 689 SWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIK 725


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 244/804 (30%), Positives = 404/804 (50%), Gaps = 100/804 (12%)

Query: 72  CRNFQIGPEIYGELLQGCVYK-----RDMYTGQQIHARILKNGDFFARNEYVETKLVVFY 126
           C NF   PE   E L+  + K     ++    + +H+ I+ +G   + +     KL+  Y
Sbjct: 7   CSNFNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSG--LSLSVIFSGKLISKY 64

Query: 127 AKC-DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           A+  D +   S         NV+ W +II      GL  +AL  + EM+E  + PD F  
Sbjct: 65  AQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTF 124

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
           P+V+ +C  +  +  G  VH + +++GF+  +++ ++LIDMY +  DL+ AR VF+ M  
Sbjct: 125 PSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSN 184

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           R+ V+WNS+I GY  NG  E+A+ ++++  + G+ P   +++S+L A  +L A+ EG   
Sbjct: 185 RDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAV 244

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-- 363
           H V    G+  D ++G+ +++ Y K   L +A  VFS+M  +D VTWN +I  Y Q G  
Sbjct: 245 HGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRH 304

Query: 364 -------------------------------------------------QSDVVVASSIV 374
                                                            + D V  + ++
Sbjct: 305 EASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILI 364

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE------- 427
           DMYAKC  +  A++VF++   +D V WN+L+  Y   G   E    F  M++E       
Sbjct: 365 DMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVT 424

Query: 428 ---------------------------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
                                      G    +I  NS++  + + G+M++   +F  M 
Sbjct: 425 FVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMS 484

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
           +     ++I+W T+I+                EM   G+ P   T+   L  C+ +A  R
Sbjct: 485 A----HDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRR 540

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            G+ IHGY+ +       PI  +L++MY+KCG++    +VF     K++  + A+IS + 
Sbjct: 541 QGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFG 600

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
           M+G   +AL  F++++  G+ PDS+ F   + ACSH+G+V EGL  F  M +D+ ++P M
Sbjct: 601 MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 660

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EH+ CVV+LL+R G L +A   IL+MP  PDA + G+LLS C     T +A+ +S+ +L+
Sbjct: 661 EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 720

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           L  D+ G YV +SN YA  G+W++V  VR+ MK KGL+K PG SWI+I + ++VF   D+
Sbjct: 721 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 780

Query: 761 SHPKTEEIYATLALLGMHVRLVSK 784
           S  + +++   L  L   VRL++K
Sbjct: 781 SFEQYDKVKDLLEYL---VRLMAK 801


>gi|357490817|ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517031|gb|AES98654.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/789 (31%), Positives = 417/789 (52%), Gaps = 38/789 (4%)

Query: 19  PQKPLKLSQTHLTKLRESDNSYE----SLYKSYFHQISSLSKEKQIREAVDLLTEMKCRN 74
           P KP K       ++  + N+      S+ K    Q++ L     + EAV +L  +  + 
Sbjct: 19  PNKPTKFDCISSKRVNANSNNVSTTKPSIRKLIDSQLNQLCINGSLSEAVTILDSLAEQG 78

Query: 75  FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV 134
            ++ P  Y  LLQ C+ K  ++ G+++H+RI   G     N +VETKLV  YAKC  L +
Sbjct: 79  CRVKPITYMNLLQSCIDKDCIFIGKELHSRI---GLVENVNPFVETKLVSMYAKCGLLGM 135

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG-FVEMQEDGVSPDNFVLPNVLKACG 193
           A ++F  + V+N+F+W+A+IG  C    S   ++G F  M  DGV PD F+LP VL+ACG
Sbjct: 136 ARKVFNEMSVRNLFTWSAMIG-GCSRNKSWGEVVGLFYAMMRDGVLPDEFLLPKVLQACG 194

Query: 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
               +  GR +H  V++ G      + +S++ +Y KCG+++ A+K+FD M  R+ VAWN+
Sbjct: 195 KCRDLETGRLIHSMVIRRGMRWSKHLRNSIMAVYAKCGEMDCAKKIFDCMDERDSVAWNA 254

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           MI G+ QNG   +A + F  M  +GVEP+ V+   ++S    L   D            G
Sbjct: 255 MISGFCQNGEIGQAQKYFDAMQKDGVEPSLVTWNILISCYNQLGHCDLAIDLMRKMEWFG 314

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ--------- 364
           +  D    +S+I+ +++ G +  A  +   M    +   N+ IAS   +           
Sbjct: 315 IAPDVYTWTSMISGFTQKGRISHALDLLKEMFLAGVEANNITIASAASACAALKSLSMGL 374

Query: 365 ------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                        +V+V +S++DMY KC  +  A+ +F+ +  RDV  WN+++  Y   G
Sbjct: 375 EIHSIAVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMSERDVYSWNSIIGGYFQAG 434

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG-VQPNLITW 471
             G+A  LF +MQ     PNII+WN +I G++++G  ++A D+F  ++  G  + N  +W
Sbjct: 435 FCGKAHELFMKMQESDSPPNIITWNIMITGYMQSGAEDQALDLFKSIEKDGKTKRNAASW 494

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
            +LISG  Q+   ++A+  F+ M    I P++ TI   L  C ++ + +  + IH + +R
Sbjct: 495 NSLISGFVQSGQKDKALQIFRNMQFCHILPNSVTILSILPVCANLVASKKVKEIHCFAVR 554

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
             L     +   L+D YAK GN+  +K +F+    K+   +N+M+S Y +HG +  AL L
Sbjct: 555 RILVSELSVSNLLIDSYAKSGNLMYSKNIFNELSWKDAVSWNSMLSSYVLHGCSESALDL 614

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  ++++G+ P+  TF +IL A  HAG+V+EG  +F  +  D+ V+  MEH+  +V LL 
Sbjct: 615 FYQMRKQGLQPNRGTFASILLAYGHAGMVDEGKSVFSCITKDYLVRQGMEHYSAMVYLLG 674

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G L EAL  I +MP +P++ + G+LL+ C       +A    + +L+ EP N      
Sbjct: 675 RSGKLAEALDFIQSMPIEPNSSVWGALLTACRIHRNFGVAVLAGKRMLEFEPGNNITRHL 734

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
           LS AY+  G++           EK + K  G SWI+    +H FV  D+S+P  +++++ 
Sbjct: 735 LSQAYSLCGKFEPEG-------EKAVNKPIGQSWIERNNVVHTFVVGDQSNPYLDKLHSW 787

Query: 772 LALLGMHVR 780
           L  + ++V+
Sbjct: 788 LKRVAVNVK 796


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/740 (31%), Positives = 394/740 (53%), Gaps = 39/740 (5%)

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           ++ +A+  L  M  +      + Y   L+ C+  R    G  +H ++ ++      +   
Sbjct: 46  RLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSD--LQLDSVT 103

Query: 119 ETKLVVFYAKCDALDVASRLFCRL--RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED 176
              L+  Y+KC   + A+ +F RL    +++ SW+A++       +  +AL+ FV+M E+
Sbjct: 104 LNSLISLYSKCGQWEKATSIF-RLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF---DGCVFVASSLIDMYGKC-GD 232
           G  P+ +      +AC    +V  G ++ G+V+K G+   D CV     LIDM+ K  GD
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCV--GCGLIDMFVKGRGD 220

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L  A KVF+ M  RN V W  MI   +Q G   EAI +F +M   G EP R +++ ++SA
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISA 280

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV---GLLEDAEVVFSRMVERDI 349
            AN++ L  G+Q H+ A+ +G+ LD  +G  +IN Y+K    G +  A  +F ++++ ++
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNV 340

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV----LWNTLL 405
            +W  +I  YVQ G  D                 + A  +F  +IL  V+     +++ L
Sbjct: 341 FSWTAMITGYVQKGGYD-----------------EEALDLFRGMILTHVIPNHFTFSSTL 383

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
            A A+L       ++F      G S      NS+I  + R+G++++A+  F     +  +
Sbjct: 384 KACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAF----DILFE 439

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            NLI++ T+I    +N    EA+  F E+ + G+  S  T    LS    + ++  G  I
Sbjct: 440 KNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQI 499

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           H  +I+  L L   +  +L+ MY++CGNI  A +VF+    + +  + ++I+G+A HG A
Sbjct: 500 HARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFA 559

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            +AL LF  + ++G+ P+ +T+  +L+ACSH GLVNEG + F  M+++H V P MEH+ C
Sbjct: 560 TQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYAC 619

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           +V++L R G+L EA++ I +MP   DA +  + L  C      EL ++ ++ +++ EP +
Sbjct: 620 IVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHD 679

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
           P  Y+ LSN YA+  +W+EVS +R  MKEK L K  GCSW+++  ++H F   D SHPK 
Sbjct: 680 PAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKA 739

Query: 766 EEIYATLALLGMHVRLVSKV 785
            EIY  L  L + ++ +  V
Sbjct: 740 AEIYDELQNLSVKIKKLGYV 759



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 134/567 (23%), Positives = 236/567 (41%), Gaps = 105/567 (18%)

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           ++  + NG   +AI     M  +G  P   + +  L       + D G   H     + +
Sbjct: 38  LIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDL 97

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLI----------------- 356
           +LD+V  +S+I+ YSK G  E A  +F  M   RD+++W+ ++                 
Sbjct: 98  QLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFV 157

Query: 357 -----------------------ASYVQSG-------------QSDVVVASSIVDMYAKC 380
                                  A +V  G             QSDV V   ++DM+ K 
Sbjct: 158 DMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKG 217

Query: 381 E-RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              + +A +VF  +  R+ V W  ++      G +GEA  LF  M   G  P+  + + V
Sbjct: 218 RGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGV 277

Query: 440 I-----------------------LGFLR---------------NGQMNEAKDMFLQMQS 461
           I                       L   R               +G M  A+ +F Q+  
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI-- 335

Query: 462 LGVQPNLITWTTLISGLTQN-SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
             +  N+ +WT +I+G  Q      EA+  F+ M+ T + P+  T +  L AC ++A+LR
Sbjct: 336 --LDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALR 393

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            G  +  + ++        +  SL+ MYA+ G I  A++ FDI   K L  YN +I  YA
Sbjct: 394 IGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYA 453

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            +  + EAL LF  ++ +G+   + TF ++L+  +  G + +G ++   +     +K + 
Sbjct: 454 KNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQ 512

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG--SLLSTCVKSN-ETELAEYISEH 697
                ++++ SRCGN++ A +V   M    D ++I   S+++   K    T+  E   + 
Sbjct: 513 SVCNALISMYSRCGNIESAFQVFEDM---EDRNVISWTSIITGFAKHGFATQALELFHKM 569

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNE 724
           L +    N   Y+A+ +A +  G  NE
Sbjct: 570 LEEGVRPNEVTYIAVLSACSHVGLVNE 596



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 16/227 (7%)

Query: 37  DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMY 96
           D  +E    SY   I + +K     EA++L  E++ +        +  LL G      + 
Sbjct: 435 DILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIG 494

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
            G+QIHAR++K+G     N+ V   L+  Y++C  ++ A ++F  +  +NV SW +II  
Sbjct: 495 KGEQIHARVIKSG--LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITG 552

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-------RAVHGYVL 209
             + G + +AL  F +M E+GV P+      VL AC  +G V  G          HG + 
Sbjct: 553 FAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIP 612

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI 255
           ++    C+      +D+ G+ G L EA +  + M  + + + W + +
Sbjct: 613 RMEHYACI------VDILGRSGSLSEAIQFINSMPYKADALVWRTFL 653


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/804 (30%), Positives = 404/804 (50%), Gaps = 100/804 (12%)

Query: 72  CRNFQIGPEIYGELLQGCVYK-----RDMYTGQQIHARILKNGDFFARNEYVETKLVVFY 126
           C NF   PE   E L+  + K     ++    + +H+ I+ +G   + +     KL+  Y
Sbjct: 7   CSNFNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSG--LSLSVIFSGKLISKY 64

Query: 127 AKC-DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           A+  D +   S         NV+ W +II      GL  +AL  + EM+E  + PD F  
Sbjct: 65  AQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTF 124

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
           P+V+ +C  +  +  G  VH + +++GF+  +++ ++LIDMY +  DL+ AR VF+ M  
Sbjct: 125 PSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSN 184

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           R+ V+WNS+I GY  NG  E+A+ ++++  + G+ P   +++S+L A  +L A+ EG   
Sbjct: 185 RDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAV 244

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-- 363
           H V    G+  D ++G+ +++ Y K   L +A  VFS+M  +D VTWN +I  Y Q G  
Sbjct: 245 HGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRH 304

Query: 364 -------------------------------------------------QSDVVVASSIV 374
                                                            + D V  + ++
Sbjct: 305 EASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILI 364

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE------- 427
           DMYAKC  +  A++VF++   +D V WN+L+  Y   G   E    F  M++E       
Sbjct: 365 DMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVT 424

Query: 428 ---------------------------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
                                      G    +I  NS++  + + G+M++   +F  M 
Sbjct: 425 FVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMS 484

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
           +     ++I+W T+I+                EM   G+ P   T+   L  C+ +A  R
Sbjct: 485 A----HDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRR 540

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            G+ IHGY+ +       PI  +L++MY+KCG++    +VF     K++  + A+IS + 
Sbjct: 541 QGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFG 600

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
           M+G   +AL  F++++  G+ PDS+ F   + ACSH+G+V EGL  F  M +D+ ++P M
Sbjct: 601 MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 660

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EH+ CVV+LL+R G L +A   IL+MP  PDA + G+LLS C     T +A+ +S+ +L+
Sbjct: 661 EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 720

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           L  D+ G YV +SN YA  G+W++V  VR+ MK KGL+K PG SWI+I + ++VF   D+
Sbjct: 721 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 780

Query: 761 SHPKTEEIYATLALLGMHVRLVSK 784
           S  + +++   L  L   VRL++K
Sbjct: 781 SFEQYDKVKDLLEYL---VRLMAK 801


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/813 (29%), Positives = 411/813 (50%), Gaps = 125/813 (15%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  ++Q C     +  G+Q HAR++ +G  F  + Y+   L+  Y +C  L+ A ++F +
Sbjct: 46  FSHIIQECSDYNSLKPGKQAHARMIVSG--FIPDVYISNCLMKMYLRCSHLNYAYKVFEK 103

Query: 142 LRVKNVFS-------------------------------WAAIIGLNCRVGLSEKALIGF 170
           +  ++V S                               W +++    + G   K++  F
Sbjct: 104 MSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVF 163

Query: 171 VEM-QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           ++M + + V  D      VLKAC  L   G G  VHG ++++GF   V   S+L+DMY K
Sbjct: 164 LDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAK 223

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           C  L+++ K+F  +  +N V W+++I G VQN  +   + +F EM   G+  ++    S+
Sbjct: 224 CKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASV 283

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
             + A L AL  G Q HA A+      D  +G++ ++ Y+K G L DA+ +F+ + +  +
Sbjct: 284 FRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSL 343

Query: 350 VTWNLLIASYV----------------QSG------------------------------ 363
             +N +I   V                +SG                              
Sbjct: 344 QCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSL 403

Query: 364 ------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                 +S++ VA+SI+DMY KCE +  A  +F+ +  RD V WN ++AA+   G   E 
Sbjct: 404 SVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEET 463

Query: 418 SRLFYQMQLEGISPNIISWNSVI-----------------------LG------------ 442
             LF  M    + P+  ++ SV+                       LG            
Sbjct: 464 LNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDM 523

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
           + + G + EAK +  +++    Q  +++W  +I+G T      +A  FF EML+  +KP 
Sbjct: 524 YCKCGMIEEAKKIHDRIE----QQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPD 579

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
             T    L AC ++AS+  G+ IHG +I+ +L     I ++LVDMY+KCGN+  +  VF+
Sbjct: 580 NFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFE 639

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
            +P+K+   +NAMI GYA HGL  EAL  F+ +Q + + P+  TF +IL AC+H G +++
Sbjct: 640 KAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDK 699

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           GL  F  M +++ ++P +EH+ C+++++ R G + EAL++I  MP + DA I  +LLS C
Sbjct: 700 GLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSIC 759

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
                 E+AE  +  +LQLEP++    + LSN YA +G W +VS++R +M+   L+K PG
Sbjct: 760 KIHGNIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPG 819

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           CSWI++ +E+H F+  +++HP+ EEIY  L++L
Sbjct: 820 CSWIEVKDEVHAFLVGNKTHPRYEEIYKILSVL 852



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 122/302 (40%), Gaps = 68/302 (22%)

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
           +T +     T +  +  C+D  SL+ G+  H  +I         I   L+ MY +C +++
Sbjct: 36  QTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLN 95

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN----------------LQ--- 596
            A +VF+    +++  YN MISGYA  G    A   F +                LQ   
Sbjct: 96  YAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGE 155

Query: 597 -QKGIDP------------DSITFTNILNACS-----HAGLVNEGLELFVGMFSDHQVKP 638
            +K ID             D  TF  +L ACS       G+   GL + +G + D     
Sbjct: 156 CRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGS 215

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
           ++      +++ ++C  LD++L++   +P   +     ++++ CV+++         EH+
Sbjct: 216 AL------LDMYAKCKRLDDSLKIFSEIPV-KNWVCWSAIIAGCVQND---------EHI 259

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF-VA 757
           L LE       V +            VSQ    +     R   G S +++G +LH   + 
Sbjct: 260 LGLELFKEMQKVGIG-----------VSQS---IYASVFRSCAGLSALKVGTQLHAHALK 305

Query: 758 CD 759
           CD
Sbjct: 306 CD 307


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/766 (31%), Positives = 392/766 (51%), Gaps = 91/766 (11%)

Query: 95  MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII 154
           +  G  +HA +LK+G F A    +   L+ FY+KC     A R+F  +      SW++++
Sbjct: 20  LLPGAHLHANLLKSG-FLAS---LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLV 75

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD 214
                 GL   A+  F  M+ +GV  + F LP VLK          G  VH   +  GF 
Sbjct: 76  TAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---AQLGAQVHAMAMATGFG 132

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
             VFVA++L+ MYG  G +++AR+VFD   + RN V+WN ++  YV+N    +AI+VF E
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M   G++PT    + +++A      +D G+Q HA+ V  G E D    +++++ Y K+G 
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGR 252

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----------------------------- 364
           ++ A V+F +M + D+V+WN LI+  V +G                              
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKA 312

Query: 365 -----------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
                                  SD  +   +VDMYAK   +D+A +VF+ +  RD++LW
Sbjct: 313 CAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILW 372

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI--------------------- 440
           N L++  +  GR  EA  +FY ++ EG+  N  +  +V+                     
Sbjct: 373 NALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEK 432

Query: 441 LGFLRNGQM-NEAKDMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILF 490
           +GF+ +  + N   D + +   L             ++I  T++I+ L+Q   G  AI  
Sbjct: 433 IGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKL 492

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           F EML  G++P    ++  L+AC  +++   G+ +H +LI+           +LV  YAK
Sbjct: 493 FMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK 552

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           CG+I  A+  F   P + +  ++AMI G A HG    AL LF  +  +GI+P+ IT T++
Sbjct: 553 CGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSV 612

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L AC+HAGLV+E    F  M     +  + EH+ C+++LL R G LD+A+ ++ +MP   
Sbjct: 613 LCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQA 672

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
           +A + G+LL       + EL +  +E L  LEP+  G +V L+N YA+SG WNEV++VR 
Sbjct: 673 NASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRK 732

Query: 731 IMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLG 776
           +MK+  ++K P  SW+++ +++H F+  D+SHP T+EIY+ L  LG
Sbjct: 733 LMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELG 778



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 233/482 (48%), Gaps = 28/482 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+  K  Q  +A+ +  EM     Q     +  ++  C   R++  G+Q+HA +++ G 
Sbjct: 174 MSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMG- 232

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            + ++ +    LV  Y K   +D+AS +F ++   +V SW A+I      G   +A+   
Sbjct: 233 -YEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL 291

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           ++M+  G+ P+ F+L ++LKAC   G    GR +HG+++K   D   ++   L+DMY K 
Sbjct: 292 LQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKN 351

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             L++A KVFD M  R+++ WN++I G    G ++EA  +FY +  EG+   R ++ ++L
Sbjct: 352 HFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVL 411

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            ++A+L+A    +Q HA+A   G   D  + + +I+ Y K   L DA  VF      DI+
Sbjct: 412 KSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDII 471

Query: 351 TWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
               +I +  Q                   + D  V SS+++  A     +  KQV   +
Sbjct: 472 AVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 394 ILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           I R    D    N L+  YA  G   +A   F  +   G    ++SW+++I G  ++G  
Sbjct: 532 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERG----VVSWSAMIGGLAQHGHG 587

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITC 508
             A ++F +M   G+ PN IT T+++         +EA  +F  M E  GI  +    +C
Sbjct: 588 KRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSC 647

Query: 509 AL 510
            +
Sbjct: 648 MI 649



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 4/207 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++LS+      A+ L  EM  +  +  P +   LL  C        G+Q+HA ++K   
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ- 535

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +    LV  YAKC +++ A   F  L  + V SW+A+IG   + G  ++AL  F
Sbjct: 536 -FMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELF 594

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFVASSLIDMYGK 229
             M ++G++P++  + +VL AC   G V   +     + ++ G D      S +ID+ G+
Sbjct: 595 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 654

Query: 230 CGDLEEARKVFDGM-IARNVVAWNSMI 255
            G L++A ++ + M    N   W +++
Sbjct: 655 AGKLDDAMELVNSMPFQANASVWGALL 681



 Score = 42.4 bits (98), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 10/188 (5%)

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
           S  TI+  L+      +L  G  +H  L++        +   L+  Y+KC     A+RVF
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHANLLKSGFL--ASLRNHLISFYSKCRRPCCARRVF 60

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           D  P      ++++++ Y+ +GL   A+  F  ++ +G+  +      +L     A L  
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQLGA 120

Query: 622 E--GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           +   + +  G  SD  V  ++      V +    G +D+A RV      + +A     L+
Sbjct: 121 QVHAMAMATGFGSDVFVANAL------VAMYGGFGFMDDARRVFDEAGSERNAVSWNGLM 174

Query: 680 STCVKSNE 687
           S  VK+++
Sbjct: 175 SAYVKNDQ 182


>gi|449523327|ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/779 (31%), Positives = 415/779 (53%), Gaps = 47/779 (6%)

Query: 10  PNP-KFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLT 68
           P P KFS     KP+K S     KL    N            +S L     +REA+  + 
Sbjct: 23  PRPLKFS----SKPIKTSIFFTYKLTSKFND---------DHLSYLCSNGLLREAITAID 69

Query: 69  EMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK 128
            +  R  ++    Y  LLQ C+    +  G+++H R+   G     N +VETKLV  YAK
Sbjct: 70  SISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRM---GLVHRVNPFVETKLVSMYAK 126

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188
           C  L  A ++F  ++ +N+++W+A+IG   R    ++ +  F  M  DGV PD F+ P +
Sbjct: 127 CGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKI 186

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           L+ACG    +   + +H  V++ G    + +++S++  + KCG L  ARK F  M  R+ 
Sbjct: 187 LQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDG 246

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD----ALDEGKQ 304
           V+WN MI GY Q G  +EA R+   M+ +G +P  V+   ++++ + L      +D  K+
Sbjct: 247 VSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKK 306

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
             +V    G+  D    +S+I+ +S+   +  A   F +M+   +    + IAS   +  
Sbjct: 307 MESV----GLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACA 362

Query: 365 S---------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           S                     + +V +S++DMY+KC +++ A+ VF++I+ +DV  WN+
Sbjct: 363 SLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNS 422

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-L 462
           ++  Y   G  G+A  LF +++   + PN+++WN++I G ++NG  ++A D+F  M+   
Sbjct: 423 MIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDG 482

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
           GV+ N  +W +LI+G  Q    N+A+  F++M      P++ TI   L AC +V + +  
Sbjct: 483 GVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKI 542

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           + IHG ++R +L     +  SLVD YAK GNI  ++ VF+   SK++  +N++I+GY +H
Sbjct: 543 KEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILH 602

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G +  A  LF  ++  GI P+  T  +I++A   AG+V++G  +F  +  +HQ+ P+++H
Sbjct: 603 GCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDH 662

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           +  +V+L  R G L +A+  I  MP +PD  I  SLL+ C       LA   ++ L +LE
Sbjct: 663 YLAMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLAAKRLHELE 722

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           PDN   Y  L  AYA  G++ +  +VR + KE  ++K     W+++  ++H+FV  D+S
Sbjct: 723 PDNHVIYRLLVQAYALYGKFEQTLKVRKLGKESAMKKCTAQCWVEVRNKVHLFVTGDQS 781


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 247/758 (32%), Positives = 377/758 (49%), Gaps = 93/758 (12%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +QIHA++L  G     +  + ++++  Y  C +      LFCRL++     W  +I    
Sbjct: 96  RQIHAKVLVCG--MNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFS 153

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
            +G  + AL+ F  M    V+PD +  P V+KACG L  V   + VH     +GF   +F
Sbjct: 154 MLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLF 213

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           + SSLI +Y   G + +A+ +FD +  R+ + WN M+ GYV+NG    A+  F EM    
Sbjct: 214 IGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSC 273

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V+P  VS   +LS  A    +  G Q H + + +G E D  + ++II  YSK G L DA 
Sbjct: 274 VKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDAR 333

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVA---------------------------- 370
            +F  M + D VTWN LIA YVQ+G +D  VA                            
Sbjct: 334 KIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSG 393

Query: 371 ------------------------SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                                   S++VD+Y K   ++ A + F    L DV +   +++
Sbjct: 394 SLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMIS 453

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LG-------------- 442
            Y   G + EA  LF  +  EG+ PN ++  SV+          LG              
Sbjct: 454 GYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLEN 513

Query: 443 -----------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
                      + ++G+++ A   F +M       + + W  +I   +QN     AI  F
Sbjct: 514 VCQVGSSITYMYAKSGRLDLAYQFFRRMPV----KDSVCWNLMIVSFSQNGKPELAIDLF 569

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
           ++M  +G K  + +++  LSAC +  +L  G+ +H +++R+     T + ++L+DMY+KC
Sbjct: 570 RQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKC 629

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G +  A+ VFD+   K    +N++I+ Y  HG   E L LF  + + GI PD +TF  I+
Sbjct: 630 GKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIM 689

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
           +AC HAGLV+EG+  F  M  ++ +   MEHF C+V+L  R G L EA   I +MP  PD
Sbjct: 690 SACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPD 749

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
           A   GSLL  C      ELA+  S+HL++L+P+N G YV LSN +A +G W  V +VR +
Sbjct: 750 AGTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSL 809

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           MKEKG++K PG SWI +    H+F A D  HP++ EIY
Sbjct: 810 MKEKGVQKIPGYSWIDVNGGTHMFSAADGCHPQSVEIY 847



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 135/282 (47%), Gaps = 12/282 (4%)

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
             +L  C     +  G+++H  ILK G        V + +   YAK   LD+A + F R+
Sbjct: 484 ASVLPACAALASLKLGKELHCDILKKG--LENVCQVGSSITYMYAKSGRLDLAYQFFRRM 541

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
            VK+   W  +I    + G  E A+  F +M   G   D+  L   L AC     + +G+
Sbjct: 542 PVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGK 601

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            +H +V++  F    FVAS+LIDMY KCG L  AR VFD M  +N V+WNS+I  Y  +G
Sbjct: 602 ELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHG 661

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK-----QAHAVAVINGMELD 317
              E + +F+EM   G++P  V+   I+SA  +   +DEG            +   ME  
Sbjct: 662 RPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARME-- 719

Query: 318 NVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIAS 358
               + +++ Y + G L +A + + S     D  TW  L+ +
Sbjct: 720 --HFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGA 759



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 16/213 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I S S+  +   A+DL  +M     +         L  C     +Y G+++H  +++N  
Sbjct: 553 IVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNS- 611

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +V + L+  Y+KC  L +A  +F  +  KN  SW +II      G   + L  F
Sbjct: 612 -FISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLF 670

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFG----RAV---HGYVLKVGFDGCVFVASSL 223
            EM E G+ PD+     ++ ACG  G V  G    R +   +G   ++    C      +
Sbjct: 671 HEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFAC------M 724

Query: 224 IDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
           +D+YG+ G L EA      M    +   W S++
Sbjct: 725 VDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLL 757


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/724 (31%), Positives = 379/724 (52%), Gaps = 92/724 (12%)

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           NV+ W +II      GL  +AL  + E Q   + PD +  P+V+ AC  L      +++H
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 197

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
             VL +GF   +++ ++LIDMY +  DL++ARKVF+ M  R+VV+WNS+I GY  NG   
Sbjct: 198 DRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 257

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           EA+ ++Y     GV P   +++S+L A   L +++EG   H +    G++ D ++ + ++
Sbjct: 258 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 317

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------------- 363
           + Y K   L D   +F +MV RD V+WN +I  Y Q G                      
Sbjct: 318 SMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLT 377

Query: 364 -----------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
                                        + D   ++ +++MYAKC  +  +++VF+ + 
Sbjct: 378 ITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMK 437

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE--------------------------- 427
            +D V WN+++  Y   G   EA +LF  M+ +                           
Sbjct: 438 CKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKEL 497

Query: 428 -------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
                  G + NI+  N+++  + + G+M ++  +F  M++     ++ITW T+I+    
Sbjct: 498 HCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKA----RDIITWNTIIASCVH 553

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
           +   N  +     M   G+ P   T+   L  C+ +A+ R G+ IHG + +  L    P+
Sbjct: 554 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 613

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
              L++MY+KCG++  + +VF +  +K++  + A+IS   M+G   +A+  F  ++  GI
Sbjct: 614 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI 673

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
            PD + F  I+ ACSH+GLV EGL  F  M  D++++P +EH+ CVV+LLSR   LD+A 
Sbjct: 674 VPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAE 733

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
             IL+MP  PD+ I G+LLS C  S +TE+A+ +SE +++L PD+ G YV +SN YAA G
Sbjct: 734 DFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALG 793

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           +W++V  +R  +K +GL+K+PGCSW++I  +++VF    +   + EE+     LLGM   
Sbjct: 794 KWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVN---KLLGMLAG 850

Query: 781 LVSK 784
           L++K
Sbjct: 851 LMAK 854



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 134/568 (23%), Positives = 246/568 (43%), Gaps = 98/568 (17%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-GMIARNVVAWNSMIVGYVQNG 262
           +H  ++ +G    V  ++ LI  Y    D   +  VF     + NV  WNS+I     NG
Sbjct: 94  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNG 153

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
           L  EA+ ++ E     ++P   +  S+++A A L   +  K  H   +  G   D  +G+
Sbjct: 154 LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGN 213

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------- 363
           ++I+ Y +   L+ A  VF  M  RD+V+WN LI+ Y  +G                   
Sbjct: 214 ALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVP 273

Query: 364 ---------------------------------QSDVVVASSIVDMYAKCERIDNAKQVF 390
                                            + DV+V + ++ MY K   + + +++F
Sbjct: 274 DSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIF 333

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLR 445
           + ++LRD V WNT++  Y+ +G   E+ +LF +M +    P++++  S++     LG L 
Sbjct: 334 DKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLE 392

Query: 446 NGQM-------------NEAKDMFLQMQS-----LGVQ--------PNLITWTTLISGLT 479
            G+                A ++ + M +     L  Q         + ++W ++I+   
Sbjct: 393 FGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYI 452

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           QN   +EA+  F+ M++T +KP + T    LS  T +  L  G+ +H  L +        
Sbjct: 453 QNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIV 511

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           +  +LVDMYAKCG +  + +VF+   ++++  +N +I+           L +   ++ +G
Sbjct: 512 VSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEG 571

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           + PD  T  +IL  CS      +G E+      +G+ SD  V         ++ + S+CG
Sbjct: 572 VTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVG------NVLIEMYSKCG 625

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTC 682
           +L  + +V   M    D     +L+S C
Sbjct: 626 SLRNSFQVFKLMK-TKDVVTWTALISAC 652


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/724 (31%), Positives = 379/724 (52%), Gaps = 92/724 (12%)

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           NV+ W +II      GL  +AL  + E Q   + PD +  P+V+ AC  L      +++H
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
             VL +GF   +++ ++LIDMY +  DL++ARKVF+ M  R+VV+WNS+I GY  NG   
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           EA+ ++Y     GV P   +++S+L A   L +++EG   H +    G++ D ++ + ++
Sbjct: 199 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 258

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------------- 363
           + Y K   L D   +F +MV RD V+WN +I  Y Q G                      
Sbjct: 259 SMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLT 318

Query: 364 -----------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
                                        + D   ++ +++MYAKC  +  +++VF+ + 
Sbjct: 319 ITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMK 378

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE--------------------------- 427
            +D V WN+++  Y   G   EA +LF  M+ +                           
Sbjct: 379 CKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKEL 438

Query: 428 -------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
                  G + NI+  N+++  + + G+M ++  +F  M++     ++ITW T+I+    
Sbjct: 439 HCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKA----RDIITWNTIIASCVH 494

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
           +   N  +     M   G+ P   T+   L  C+ +A+ R G+ IHG + +  L    P+
Sbjct: 495 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 554

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
              L++MY+KCG++  + +VF +  +K++  + A+IS   M+G   +A+  F  ++  GI
Sbjct: 555 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI 614

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
            PD + F  I+ ACSH+GLV EGL  F  M  D++++P +EH+ CVV+LLSR   LD+A 
Sbjct: 615 VPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAE 674

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
             IL+MP  PD+ I G+LLS C  S +TE+AE +SE +++L PD+ G YV +SN YAA G
Sbjct: 675 DFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALG 734

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           +W++V  +R  +K +GL+K+PGCSW++I  +++VF    +   + EE+     LLGM   
Sbjct: 735 KWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVN---KLLGMLAG 791

Query: 781 LVSK 784
           L++K
Sbjct: 792 LMAK 795



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/568 (23%), Positives = 246/568 (43%), Gaps = 98/568 (17%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-GMIARNVVAWNSMIVGYVQNG 262
           +H  ++ +G    V  ++ LI  Y    D   +  VF     + NV  WNS+I     NG
Sbjct: 35  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNG 94

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
           L  EA+ ++ E     ++P   +  S+++A A L   +  K  H   +  G   D  +G+
Sbjct: 95  LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGN 154

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------- 363
           ++I+ Y +   L+ A  VF  M  RD+V+WN LI+ Y  +G                   
Sbjct: 155 ALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVP 214

Query: 364 ---------------------------------QSDVVVASSIVDMYAKCERIDNAKQVF 390
                                            + DV+V + ++ MY K   + + +++F
Sbjct: 215 DSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIF 274

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLR 445
           + ++LRD V WNT++  Y+ +G   E+ +LF +M +    P++++  S++     LG L 
Sbjct: 275 DKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLE 333

Query: 446 NGQM-------------NEAKDMFLQMQS-----LGVQ--------PNLITWTTLISGLT 479
            G+                A ++ + M +     L  Q         + ++W ++I+   
Sbjct: 334 FGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYI 393

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           QN   +EA+  F+ M++T +KP + T    LS  T +  L  G+ +H  L +        
Sbjct: 394 QNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIV 452

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           +  +LVDMYAKCG +  + +VF+   ++++  +N +I+           L +   ++ +G
Sbjct: 453 VSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEG 512

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           + PD  T  +IL  CS      +G E+      +G+ SD  V         ++ + S+CG
Sbjct: 513 VTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVG------NVLIEMYSKCG 566

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTC 682
           +L  + +V   M    D     +L+S C
Sbjct: 567 SLRNSFQVFKLMKT-KDVVTWTALISAC 593


>gi|449470126|ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 1463

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/779 (31%), Positives = 415/779 (53%), Gaps = 47/779 (6%)

Query: 10  PNP-KFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLT 68
           P P KFS     KP+K S     KL    N            +S L     +REA+  + 
Sbjct: 23  PRPLKFS----SKPIKTSIFFTYKLTSKFND---------DHLSYLCSNGLLREAITAID 69

Query: 69  EMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK 128
            +  R  ++    Y  LLQ C+    +  G+++H R+   G     N +VETKLV  YAK
Sbjct: 70  SISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRM---GLVHRVNPFVETKLVSMYAK 126

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188
           C  L  A ++F  ++ +N+++W+A+IG   R    ++ +  F  M  DGV PD F+ P +
Sbjct: 127 CGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKI 186

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           L+ACG    +   + +H  V++ G    + +++S++  + KCG L  ARK F  M  R+ 
Sbjct: 187 LQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDG 246

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD----ALDEGKQ 304
           V+WN MI GY Q G  +EA R+   M+ +G +P  V+   ++++ + L      +D  K+
Sbjct: 247 VSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKK 306

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
             +V    G+  D    +S+I+ +S+   +  A   F +M+   +    + IAS   +  
Sbjct: 307 MESV----GLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACA 362

Query: 365 S---------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           S                     + +V +S++DMY+KC +++ A+ VF++I+ +DV  WN+
Sbjct: 363 SLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNS 422

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-L 462
           ++  Y   G  G+A  LF +++   + PN+++WN++I G ++NG  ++A D+F  M+   
Sbjct: 423 MIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDG 482

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
           GV+ N  +W +LI+G  Q    N+A+  F++M      P++ TI   L AC +V + +  
Sbjct: 483 GVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKI 542

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           + IHG ++R +L     +  SLVD YAK GNI  ++ VF+   SK++  +N++I+GY +H
Sbjct: 543 KEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILH 602

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G +  A  LF  ++  GI P+  T  +I++A   AG+V++G  +F  +  +HQ+ P+++H
Sbjct: 603 GCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDH 662

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           +  +V+L  R G L +A+  I  MP +PD  I  SLL+ C       LA   ++ L +LE
Sbjct: 663 YLAMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLAAKRLHELE 722

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           PDN   Y  L  AYA  G++ +  +VR + KE  ++K     W+++  ++H+FV  D+S
Sbjct: 723 PDNHVIYRLLVQAYALYGKFEQTLKVRKLGKESAMKKCTAQCWVEVRNKVHLFVTGDQS 781


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/799 (31%), Positives = 397/799 (49%), Gaps = 97/799 (12%)

Query: 67  LTEMKCRNFQI-GPEIYGELLQGCVYK-RDMYTGQQIHARILKNGDFFARNEYVETKLVV 124
           L   KCR + + G   +   L+ C    R      +IHA+ +  G   +    +   L+ 
Sbjct: 28  LFAAKCRQYMVLGAVDFACALRACRGSGRRWPLVPEIHAKAIICG--LSGYRIIGNLLID 85

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
            YAK   +  A R+F  L V++  SW A++    + GL E+A+  + EM   GV P  +V
Sbjct: 86  LYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYV 145

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           L ++L AC        GR +H  V K GF    FV ++LI +Y +C     A +VF  M+
Sbjct: 146 LSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDML 205

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
             + V +N++I G+ Q G  + A+ +F EM L G+ P  V++ S+L+A + +  L +GKQ
Sbjct: 206 YCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQ 265

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY----- 359
            H+  +  GM LD ++  S+++ Y K G +E+A  +F      ++V WNL++ +Y     
Sbjct: 266 LHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDD 325

Query: 360 ----------------------------------------------VQSG-QSDVVVASS 372
                                                         +++G QSD+ V+  
Sbjct: 326 LAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGV 385

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           ++DMY+K   +D A+++ + I  +DVV W +++A Y       EA   F +MQ  GI P+
Sbjct: 386 LIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPD 445

Query: 433 IIS-----------------------------------WNSVILGFLRNGQMNEAKDMFL 457
            I                                    WN ++  + R G   EA   F 
Sbjct: 446 NIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFE 505

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
            ++        ITW  LISG  Q+    EA+  F +M + G K +  T   ++SA  ++A
Sbjct: 506 AIE----HKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLA 561

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR-VFDISPSKELPVYNAMI 576
            ++ G+ IH  +I+      T I  +L+ +Y KCG+I  AK   F+++   E+  +N +I
Sbjct: 562 DIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVS-WNTII 620

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +  + HG  +EAL LF  ++Q+G+ P  +TF  +L ACSH GLV EGL  F  M ++H +
Sbjct: 621 TCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGI 680

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
            P  +H+ CVV++L R G LD A R +  MP   D+ +  +LLS C      E+ E+ ++
Sbjct: 681 HPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAK 740

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
           HLL+LEP +  +YV LSNAYA +G+W    Q+R IMK++G+RK PG SWI++   +H F 
Sbjct: 741 HLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFF 800

Query: 757 ACDRSHPKTEEIYATLALL 775
             DR HP  ++IY  L+ L
Sbjct: 801 VGDRLHPLADQIYNFLSHL 819



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 207/430 (48%), Gaps = 26/430 (6%)

Query: 48  FHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILK 107
           + QI  L+K      + D+   M     +     Y  +L+ C +  ++  G+QIH+  +K
Sbjct: 320 YGQIDDLAK------SFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIK 373

Query: 108 NGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
           NG  F  + YV   L+  Y+K   LD A R+   +  K+V SW ++I    +    ++AL
Sbjct: 374 NG--FQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEAL 431

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
             F EMQ  G+ PDN  L + + AC  +  V  G  +H  V   G+   V + + L+ +Y
Sbjct: 432 ETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLY 491

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            +CG  +EA   F+ +  +  + WN +I G+ Q+GL EEA++VF +M   G +    +  
Sbjct: 492 ARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFV 551

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S +SASANL  + +GKQ HA  +  G   +  + +++I+ Y K G +EDA++ F  M +R
Sbjct: 552 SSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKR 611

Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
           + V+WN +I    Q G+                E +D   Q+    +    V +  +L A
Sbjct: 612 NEVSWNTIITCCSQHGRG--------------LEALDLFDQMKQQGLKPSDVTFVGVLTA 657

Query: 408 YADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
            + +G   E    F  M  E GI P    +  V+    R GQ++ AK    +M    +  
Sbjct: 658 CSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMP---IPA 714

Query: 467 NLITWTTLIS 476
           + + W TL+S
Sbjct: 715 DSMVWRTLLS 724


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 257/797 (32%), Positives = 411/797 (51%), Gaps = 94/797 (11%)

Query: 75  FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE-TKLVVFYAKCDALD 133
           F +  E  G LLQ    ++D+  G++IH   L +G    RN+ V  T+++  YA C + D
Sbjct: 80  FLLVREALGLLLQASGKRKDIEMGRKIHQ--LVSGSTRLRNDDVLCTRIITMYAMCGSPD 137

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKAC 192
            +  +F  LR KN+F W A+I    R  L ++ L  F+EM     + PD+F  P V+KAC
Sbjct: 138 DSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKAC 197

Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
             +  VG G AVHG V+K G    VFV ++L+  YG  G + +A ++FD M  RN+V+WN
Sbjct: 198 AGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWN 257

Query: 253 SMIVGYVQNGLNEEAIRVFYEMTLEGVE----PTRVSVTSILSASANLDALDEGKQAHAV 308
           SMI  +  NG +EE+  +  EM  E  +    P   ++ ++L   A    +  GK  H  
Sbjct: 258 SMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGW 317

Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY--------- 359
           AV   ++ + VL +++++ YSK G + +A+++F     +++V+WN ++  +         
Sbjct: 318 AVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGT 377

Query: 360 ------VQSGQSDV---------------------------------------VVASSIV 374
                 + +G  DV                                       +VA++ V
Sbjct: 378 FDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFV 437

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
             YAKC  +  A++VF+ I  + V  WN L+  +A       +     QM++ G+ P+  
Sbjct: 438 ASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSF 497

Query: 435 SWNSVI-----LGFLRNGQMNEA--------KDMFLQMQSLGV----------------- 464
           +  S++     L  LR G+            +D+F+ +  L +                 
Sbjct: 498 TVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAM 557

Query: 465 -QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
              +L++W T+I+G  QN   + A+  F++M+  GI+    ++     AC+ + SLR GR
Sbjct: 558 EDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGR 617

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
             H Y ++H L     I  SL+DMYAK G+I Q+ +VF+    K    +NAMI GY +HG
Sbjct: 618 EAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHG 677

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
           LA EA+ LF+ +Q+ G +PD +TF  +L AC+H+GL++EGL     M S   +KP+++H+
Sbjct: 678 LAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHY 737

Query: 644 GCVVNLLSRCGNLDEALRVIL-TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
            CV+++L R G LD+ALRV+   M  + D  I  SLLS+C      E+ E ++  L +LE
Sbjct: 738 ACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELE 797

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           P+ P NYV LSN YA  G+W +V +VR  M E  LRK+ GCSWI++  ++  FV  +R  
Sbjct: 798 PEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFL 857

Query: 763 PKTEEIYATLALLGMHV 779
              EEI +  ++L M +
Sbjct: 858 DGFEEIKSLWSILEMKI 874



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 235/534 (44%), Gaps = 75/534 (14%)

Query: 158 CRVGLSEKALIGFVE-MQEDGVSPDNFVLPN-----VLKACGALGWVGFGRAVHGYV--- 208
           C  G  +K+     E + +D  S D F+L       +L+A G    +  GR +H  V   
Sbjct: 54  CETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQLVSGS 113

Query: 209 LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
            ++  D  +   + +I MY  CG  +++R VFD + ++N+  WN++I  Y +N L +E +
Sbjct: 114 TRLRNDDVL--CTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVL 171

Query: 269 RVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327
             F EM +   + P   +   ++ A A +  +  G   H + V  G+  D  +G+++++F
Sbjct: 172 ETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSF 231

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------------------D 366
           Y   G + DA  +F  M ER++V+WN +I  +  +G S                     D
Sbjct: 232 YGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPD 291

Query: 367 VVVASSIVDMYAKCERIDNAKQVFN-SIILR---DVVLWNTLLAAYADLGRSGEASRLFY 422
           V    +++ + A+   I   K V   ++ LR   ++VL N L+  Y+  G    A  +F 
Sbjct: 292 VATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFK 351

Query: 423 QMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
                  + N++SWN+++ GF   G  +   D+  QM + G                   
Sbjct: 352 MNN----NKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGG------------------- 388

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
                           +K    TI  A+  C   + L + + +H Y ++ +      +  
Sbjct: 389 --------------EDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVAN 434

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
           + V  YAKCG++  A+RVF    SK +  +NA+I G+A       +L     ++  G+ P
Sbjct: 435 AFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLP 494

Query: 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           DS T  ++L+ACS    +  G E+  G    + ++  +  +  V++L   CG L
Sbjct: 495 DSFTVCSLLSACSKLKSLRLGKEVH-GFIIRNWLERDLFVYLSVLSLYIHCGEL 547


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/778 (31%), Positives = 402/778 (51%), Gaps = 85/778 (10%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           E +  +L+ C  +R +  G+Q+H+RI K    F  + ++  KLV  Y KC +LD A ++F
Sbjct: 81  EAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVF 139

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +  +  F+W  +IG     G    AL  +  M+ +GV       P +LKAC  L  + 
Sbjct: 140 DEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIR 199

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGY 258
            G  +H  ++K+G+    F+ ++L+ MY K  DL  AR++FDG   + + V WNS++  Y
Sbjct: 200 SGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSY 259

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             +G + E + +F EM + G  P   ++ S L+A         GK+ HA  + +      
Sbjct: 260 STSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSE 319

Query: 319 V-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ---------------- 361
           + + +++I  Y++ G +  AE +  +M   D+VTWN LI  YVQ                
Sbjct: 320 LYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIA 379

Query: 362 ----------------SGQ--------------------SDVVVASSIVDMYAKCERIDN 385
                           SG+                    S++ V ++++DMY+KC     
Sbjct: 380 AGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCY 439

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY-----QMQL-EGISPNIISWNSV 439
             + F  +  +D++ W T++A YA      EA  LF      +M++ E I  +I+  +SV
Sbjct: 440 MGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSV 499

Query: 440 ILGFL----------RNGQM-----NEAKDMFLQMQSLGVQ---------PNLITWTTLI 475
           +   L          R G +     NE  D++ + +++G            ++++WT++I
Sbjct: 500 LKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 559

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           S    N   +EA+  F+ M+ETG+   +  + C LSA   +++L  GR IH YL+R   C
Sbjct: 560 SSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFC 619

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           L   I  ++VDMYA CG++  AK VFD    K L  Y +MI+ Y MHG    A+ LF  +
Sbjct: 620 LEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKM 679

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           + + + PD I+F  +L ACSHAGL++EG      M  +++++P  EH+ C+V++L R   
Sbjct: 680 RHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANC 739

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           + EA   +  M  +P A +  +LL+ C   +E E+ E  ++ LL+LEP NPGN V +SN 
Sbjct: 740 VVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNV 799

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           +A  GRWN+V +VR  MK  G+ K+PGCSWI++  ++H F A D+SHP+++EIY  L+
Sbjct: 800 FAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLS 857



 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 160/615 (26%), Positives = 272/615 (44%), Gaps = 106/615 (17%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           A+ L   M+     +G   +  LL+ C   RD+ +G ++H+ ++K G  +    ++   L
Sbjct: 166 ALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLG--YHSTGFIVNAL 223

Query: 123 VVFYAKCDALDVASRLFCRLRVK-NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           V  YAK D L  A RLF   + K +   W +I+      G S + L  F EM   G +P+
Sbjct: 224 VSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPN 283

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC-VFVASSLIDMYGKCGDLEEARKVF 240
           ++ + + L AC    +   G+ +H  VLK       ++V ++LI MY +CG + +A ++ 
Sbjct: 284 SYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERIL 343

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
             M   +VV WNS+I GYVQN + +EA+  F +M   G +   VS+TSI++AS  L  L 
Sbjct: 344 RQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLL 403

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G + HA  + +G + +  +G+++I+ YSK  L       F RM ++D+++W  +IA Y 
Sbjct: 404 AGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYA 463

Query: 361 QS---------------------------------------------------GQSDVVV 369
           Q+                                                   G  D V+
Sbjct: 464 QNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVI 523

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
            + +VD+Y KC  +  A +VF SI  +DVV W +++++ A  G   EA  LF +M   G+
Sbjct: 524 QNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGL 583

Query: 430 SPNIISW----------------NSVILGFLRN-------------------GQMNEAKD 454
           S + ++                   +    LR                    G +  AK 
Sbjct: 584 SADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKA 643

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F +++  G    L+ +T++I+    + CG  A+  F +M    + P   +    L AC+
Sbjct: 644 VFDRIERKG----LLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 699

Query: 515 DVASLRNGRAIHGYL--IRHDLCL-PTP-IVTSLVDMYAKCGNIHQA---KRVFDISPSK 567
               L  GR   G+L  + H+  L P P     LVDM  +   + +A    ++    P+ 
Sbjct: 700 HAGLLDEGR---GFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTA 756

Query: 568 ELPVYNAMISGYAMH 582
           E  V+ A+++    H
Sbjct: 757 E--VWCALLAACRSH 769



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 134/244 (54%), Gaps = 7/244 (2%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA++L  ++  +  +I   I G +L+     + M   ++IH  IL+ G     +  ++ +
Sbjct: 470 EALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLL---DTVIQNE 526

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           LV  Y KC  +  A+R+F  ++ K+V SW ++I  +   G   +A+  F  M E G+S D
Sbjct: 527 LVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSAD 586

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGF--DGCVFVASSLIDMYGKCGDLEEARKV 239
           +  L  +L A  +L  +  GR +H Y+L+ GF  +G + VA  ++DMY  CGDL+ A+ V
Sbjct: 587 SVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVA--VVDMYACCGDLQSAKAV 644

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD +  + ++ + SMI  Y  +G  + A+ +F +M  E V P  +S  ++L A ++   L
Sbjct: 645 FDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLL 704

Query: 300 DEGK 303
           DEG+
Sbjct: 705 DEGR 708



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 119/280 (42%), Gaps = 43/280 (15%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTP----IVTSLVDMYAKCGNIHQAKRVFDISP 565
           L  C    ++  GR +H  + +     P+     +   LV MY KCG++  A++VFD  P
Sbjct: 87  LELCGKRRAVSQGRQLHSRIFK---TFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMP 143

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            +    +N MI  Y  +G    ALAL+ N++ +G+     +F  +L AC+    +  G E
Sbjct: 144 DRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSE 203

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLL----SRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           L   +     VK      G +VN L    ++  +L  A R+        DA +  S+LS+
Sbjct: 204 LHSLL-----VKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSS 258

Query: 682 CVKSNET-ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
              S ++ E  E   E  + +    P +Y  +S                       L   
Sbjct: 259 YSTSGKSLETLELFRE--MHMTGPAPNSYTIVS----------------------ALTAC 294

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            G S+ ++G+E+H  V    +H  + E+Y   AL+ M+ R
Sbjct: 295 DGFSYAKLGKEIHASVLKSSTH--SSELYVCNALIAMYTR 332


>gi|30686506|ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g19720; AltName: Full=Protein DYW7
 gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana]
 gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 894

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/742 (31%), Positives = 395/742 (53%), Gaps = 25/742 (3%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           Q   L +   + EA   L  +  +  ++    Y +LL+ C+    ++ G+ +HAR    G
Sbjct: 52  QFDYLCRNGSLLEAEKALDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILHARF---G 108

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
            F   + +VETKL+  YAKC  +  A ++F  +R +N+F+W+A+IG   R     +    
Sbjct: 109 LFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKL 168

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  M +DGV PD+F+ P +L+ C   G V  G+ +H  V+K+G   C+ V++S++ +Y K
Sbjct: 169 FRLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAK 228

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG+L+ A K F  M  R+V+AWNS+++ Y QNG +EEA+ +  EM  EG+ P  V+   +
Sbjct: 229 CGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNIL 288

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           +     L   D            G+  D    +++I+     G+   A  +F +M    +
Sbjct: 289 IGGYNQLGKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGV 348

Query: 350 VTWNLLIASYVQSGQ---------------------SDVVVASSIVDMYAKCERIDNAKQ 388
           V   + I S V +                        DV+V +S+VDMY+KC ++++A++
Sbjct: 349 VPNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARK 408

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           VF+S+  +DV  WN+++  Y   G  G+A  LF +MQ   + PNII+WN++I G+++NG 
Sbjct: 409 VFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGD 468

Query: 449 MNEAKDMFLQMQSLG-VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
             EA D+F +M+  G VQ N  TW  +I+G  QN   +EA+  F++M  +   P++ TI 
Sbjct: 469 EGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTIL 528

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
             L AC ++   +  R IHG ++R +L     +  +L D YAK G+I  ++ +F    +K
Sbjct: 529 SLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETK 588

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           ++  +N++I GY +HG    ALALF  ++ +GI P+  T ++I+ A    G V+EG ++F
Sbjct: 589 DIITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVF 648

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             + +D+ + P++EH   +V L  R   L+EAL+ I  M    +  I  S L+ C    +
Sbjct: 649 YSIANDYHIIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSETPIWESFLTGCRIHGD 708

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
            ++A + +E+L  LEP+N      +S  YA   +     +     ++  L+K  G SWI+
Sbjct: 709 IDMAIHAAENLFSLEPENTATESIVSQIYALGAKLGRSLEGNKPRRDNLLKKPLGQSWIE 768

Query: 748 IGEELHVFVACDRSHPKTEEIY 769
           +   +H F   D+S   T+ +Y
Sbjct: 769 VRNLIHTFTTGDQSKLCTDVLY 790


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/667 (34%), Positives = 362/667 (54%), Gaps = 84/667 (12%)

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           GV  D+   P VLKAC     V  GR +HG V K+GFD  VFV ++L+  YG CG L++ 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASAN 295
           ++VFD M+ R+VV+WNS+I  +  +G   EAI +F EM L  G  P  VS+ S+L   A 
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG 121

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L+    G+Q H   V  G++    +G+++++ Y K G ++D+  VF  + ER+ V+WN +
Sbjct: 122 LEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAI 181

Query: 356 IAS--YVQSGQ------------------------------------------------- 364
           I S  Y++  Q                                                 
Sbjct: 182 ITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGL 241

Query: 365 -SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
            SD+ VA++++DMYAK  R   A  VFN I  +++V WN ++A +A       A  L  Q
Sbjct: 242 ESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQ 301

Query: 424 MQLEGISPNIISWNSVI-----LGFLRNGQMNEAK-----------------DMFLQMQS 461
           MQ +G  PN +++ +V+     +GFLR G+   A+                 DM+ +   
Sbjct: 302 MQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGC 361

Query: 462 LGVQPNL--------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           L +   +        +++  LI G +Q +  +E++  F EM   G+K    +    +SAC
Sbjct: 362 LNLARRVFKISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISAC 421

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            ++A+L+ G+ +HG  +R  L     I  +L+D Y KCG I  A +VF   PS++   +N
Sbjct: 422 ANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWN 481

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           +MI GY M G    A+ LF+ +++ G++ DS+++  +L+ACSH GLV EG + F  M   
Sbjct: 482 SMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHM-QV 540

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
             +KP+  H+ C+V+LL R G ++EA+++I ++P +PDA++ G+LL  C      ELA +
Sbjct: 541 QNIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAHW 600

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            +EHL +L+P + G Y  LSN YA +G+W+E +QVR +MK +G +KNPGCSW+QI  ++H
Sbjct: 601 AAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDNQVH 660

Query: 754 VFVACDR 760
            FVA +R
Sbjct: 661 AFVAGER 667



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 150/588 (25%), Positives = 273/588 (46%), Gaps = 96/588 (16%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L+ C     +  G++IH  + K G  F  + +V   L++FY  C  L    R+F  +  
Sbjct: 13  VLKACADSLSVQKGREIHGVVFKLG--FDSDVFVGNTLLLFYGNCGGLKDVKRVFDEMLE 70

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRA 203
           ++V SW ++IG+    G   +A+  F EM    G  P+   + +VL  C  L     GR 
Sbjct: 71  RDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQ 130

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +H YV+K G D  V V ++L+D+YGKCG ++++R+VFD +  RN V+WN++I        
Sbjct: 131 IHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLER 190

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
           N++A+ +F  M   GV+P  V+ +S+L     L   D GK+ H  ++  G+E D  + ++
Sbjct: 191 NQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANA 250

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ---------------------- 361
           +I+ Y+K G    A  VF+++ E++IV+WN ++A++ Q                      
Sbjct: 251 LIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPN 310

Query: 362 -----------------------------SGQS-DVVVASSIVDMYAKCERIDNAKQVFN 391
                                        +G S D+ V++++ DMYAKC  ++ A++VF 
Sbjct: 311 SVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFK 370

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG--------- 442
            I LRD V +N L+  Y+      E+ RLF +M ++G+  +++S+  VI           
Sbjct: 371 -ISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQ 429

Query: 443 --------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
                                     +++ G+++ A  +F Q+ S     +  +W ++I 
Sbjct: 430 GKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPS----RDTASWNSMIL 485

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           G         AI  F+ M E G++  + +    LSAC+    +  G+    ++   ++  
Sbjct: 486 GYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKP 545

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHG 583
                  +VD+  + G I +A ++ +  P   +  V+ A++    +HG
Sbjct: 546 TQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHG 593



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 157/568 (27%), Positives = 256/568 (45%), Gaps = 78/568 (13%)

Query: 62  EAVDLLTEMKCRN-FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           EA+ L  EM  R+ F+        +L  C    D  TG+QIH  ++K G        V  
Sbjct: 91  EAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTG--LDSQVTVGN 148

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            LV  Y KC  +  + R+F  +  +N  SW AII     +  ++ AL  F  M + GV P
Sbjct: 149 ALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKP 208

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           ++    ++L     L    FG+ +HG+ L+ G +  +FVA++LIDMY K G   +A  VF
Sbjct: 209 NSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVF 268

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           + +  +N+V+WN+M+  + QN L   A+ +  +M  +G  P  V+ T++L A A +  L 
Sbjct: 269 NQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLR 328

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            GK+ HA A+  G  +D  + +++ + Y+K G L  A  VF ++  RD V++N+LI  Y 
Sbjct: 329 PGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYS 387

Query: 361 QSG-----------------QSDVV----------------------------------- 368
           Q+                  + DVV                                   
Sbjct: 388 QTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHLF 447

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           +A++++D Y KC RID A +VF  I  RD   WN+++  Y  LG    A  LF  M+ +G
Sbjct: 448 IANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDG 507

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
           +  + +S+ +V+      G + E K  F  MQ   ++P  + +  ++  L +     EA+
Sbjct: 508 VEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQMHYACMVDLLGRAGLIEEAV 567

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL------IRHDLCLP---TP 539
              + +    I+P        L AC           IHGY+        H   L    + 
Sbjct: 568 KLIESL---PIEPDANVWGALLGACR----------IHGYIELAHWAAEHLFKLKPQHSG 614

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSK 567
             + L +MYA+ G   +A +V  +  S+
Sbjct: 615 YYSVLSNMYAEAGKWDEANQVRKLMKSR 642



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 180/362 (49%), Gaps = 22/362 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +++ ++ +    AVDL+ +M+          +  +L  C     +  G++IHAR 
Sbjct: 278 SWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARA 337

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSW-AAIIGLNCRVGLSE 164
           ++ G   + + +V   L   YAKC  L++A R+F ++ +++  S+   IIG +     SE
Sbjct: 338 IRTGS--SVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSE 394

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
            +L  F+EM   G+  D      V+ AC  L  +  G+ VHG  ++      +F+A++L+
Sbjct: 395 -SLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALL 453

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
           D Y KCG ++ A KVF  + +R+  +WNSMI+GY   G    AI +F  M  +GVE   V
Sbjct: 454 DFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSV 513

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA-EVVFSR 343
           S  ++LSA ++   ++EGK+      +  ++   +  + +++   + GL+E+A +++ S 
Sbjct: 514 SYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQMHYACMVDLLGRAGLIEEAVKLIESL 573

Query: 344 MVERDIVTWNLLIASYVQSGQSDVV----------------VASSIVDMYAKCERIDNAK 387
            +E D   W  L+ +    G  ++                   S + +MYA+  + D A 
Sbjct: 574 PIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEAN 633

Query: 388 QV 389
           QV
Sbjct: 634 QV 635


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 257/797 (32%), Positives = 411/797 (51%), Gaps = 94/797 (11%)

Query: 75   FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE-TKLVVFYAKCDALD 133
            F +  E  G LLQ    ++D+  G++IH   L +G    RN+ V  T+++  YA C + D
Sbjct: 435  FLLVREALGLLLQASGKRKDIEMGRKIHQ--LVSGSTRLRNDDVLCTRIITMYAMCGSPD 492

Query: 134  VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKAC 192
             +  +F  LR KN+F W A+I    R  L ++ L  F+EM     + PD+F  P V+KAC
Sbjct: 493  DSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKAC 552

Query: 193  GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
              +  VG G AVHG V+K G    VFV ++L+  YG  G + +A ++FD M  RN+V+WN
Sbjct: 553  AGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWN 612

Query: 253  SMIVGYVQNGLNEEAIRVFYEMTLEGVE----PTRVSVTSILSASANLDALDEGKQAHAV 308
            SMI  +  NG +EE+  +  EM  E  +    P   ++ ++L   A    +  GK  H  
Sbjct: 613  SMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGW 672

Query: 309  AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY--------- 359
            AV   ++ + VL +++++ YSK G + +A+++F     +++V+WN ++  +         
Sbjct: 673  AVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGT 732

Query: 360  ------VQSGQSDV---------------------------------------VVASSIV 374
                  + +G  DV                                       +VA++ V
Sbjct: 733  FDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFV 792

Query: 375  DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
              YAKC  +  A++VF+ I  + V  WN L+  +A       +     QM++ G+ P+  
Sbjct: 793  ASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSF 852

Query: 435  SWNSVI-----LGFLRNGQMNEA--------KDMFLQMQSLGV----------------- 464
            +  S++     L  LR G+            +D+F+ +  L +                 
Sbjct: 853  TVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAM 912

Query: 465  -QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
               +L++W T+I+G  QN   + A+  F++M+  GI+    ++     AC+ + SLR GR
Sbjct: 913  EDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGR 972

Query: 524  AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
              H Y ++H L     I  SL+DMYAK G+I Q+ +VF+    K    +NAMI GY +HG
Sbjct: 973  EAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHG 1032

Query: 584  LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
            LA EA+ LF+ +Q+ G +PD +TF  +L AC+H+GL++EGL     M S   +KP+++H+
Sbjct: 1033 LAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHY 1092

Query: 644  GCVVNLLSRCGNLDEALRVIL-TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
             CV+++L R G LD+ALRV+   M  + D  I  SLLS+C      E+ E ++  L +LE
Sbjct: 1093 ACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELE 1152

Query: 703  PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
            P+ P NYV LSN YA  G+W +V +VR  M E  LRK+ GCSWI++  ++  FV  +R  
Sbjct: 1153 PEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFL 1212

Query: 763  PKTEEIYATLALLGMHV 779
               EEI +  ++L M +
Sbjct: 1213 DGFEEIKSLWSILEMKI 1229



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 235/534 (44%), Gaps = 75/534 (14%)

Query: 158 CRVGLSEKALIGFVE-MQEDGVSPDNFVLPN-----VLKACGALGWVGFGRAVHGYV--- 208
           C  G  +K+     E + +D  S D F+L       +L+A G    +  GR +H  V   
Sbjct: 409 CETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQLVSGS 468

Query: 209 LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
            ++  D  +   + +I MY  CG  +++R VFD + ++N+  WN++I  Y +N L +E +
Sbjct: 469 TRLRNDDVL--CTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVL 526

Query: 269 RVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327
             F EM +   + P   +   ++ A A +  +  G   H + V  G+  D  +G+++++F
Sbjct: 527 ETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSF 586

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------------------D 366
           Y   G + DA  +F  M ER++V+WN +I  +  +G S                     D
Sbjct: 587 YGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPD 646

Query: 367 VVVASSIVDMYAKCERIDNAKQVFN-SIILR---DVVLWNTLLAAYADLGRSGEASRLFY 422
           V    +++ + A+   I   K V   ++ LR   ++VL N L+  Y+  G    A  +F 
Sbjct: 647 VATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFK 706

Query: 423 QMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
                  + N++SWN+++ GF   G  +   D+  QM + G                   
Sbjct: 707 MNN----NKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGG------------------- 743

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
                           +K    TI  A+  C   + L + + +H Y ++ +      +  
Sbjct: 744 --------------EDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVAN 789

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
           + V  YAKCG++  A+RVF    SK +  +NA+I G+A       +L     ++  G+ P
Sbjct: 790 AFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLP 849

Query: 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           DS T  ++L+ACS    +  G E+  G    + ++  +  +  V++L   CG L
Sbjct: 850 DSFTVCSLLSACSKLKSLRLGKEVH-GFIIRNWLERDLFVYLSVLSLYIHCGEL 902


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 248/814 (30%), Positives = 412/814 (50%), Gaps = 101/814 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG-ELLQGCVYKRDMYT-GQQIHARILKN 108
           +S+ +K    +EAV L  +M+C    + P+ +    +  CV      T G+ IH  + K 
Sbjct: 176 MSAYAKAGDFQEAVSLFRQMQC--CGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKL 233

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G    +   V   L+  Y++C  ++ A+R+F  +  ++  SW ++IG     G    A+ 
Sbjct: 234 G--LGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVD 291

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF----DGC------VF 218
            F +M   G    +  + +VL AC  LG+   G+AVHGY +K G     D          
Sbjct: 292 LFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAA 351

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           + S L+ MY KCGD+  AR+VFD M ++ NV  WN ++ GY + G  EE++ +F +M   
Sbjct: 352 LGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHEL 411

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G+ P   +++ +L     L    +G  AH   V  G      + +++I+FY+K  ++ DA
Sbjct: 412 GIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDA 471

Query: 338 EVVFSRMVERDIVTWN-----------------LLIASYVQSGQSDVV------------ 368
            +VF+RM  +D ++WN                 L I  + Q  + D V            
Sbjct: 472 VLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQS 531

Query: 369 -----------------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                                  +A++++DMY+ C    +  Q+F S+  ++VV W  ++
Sbjct: 532 RYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMI 591

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF----------------LRNGQ- 448
            +Y   G   + + L  +M L+GI P++ +  S +  F                +RNG  
Sbjct: 592 TSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGME 651

Query: 449 -----MNEAKDMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
                 N   +M+++ +++             ++I+W TLI G ++N+  NE+   F +M
Sbjct: 652 KLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDM 711

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
           L    +P+  T+TC L A   ++SL  GR IH Y +R      +    +LVDMY KCG +
Sbjct: 712 L-LQFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGAL 770

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A+ +FD    K L  +  MI+GY MHG    A+ALF+ ++  GI+PD+ +F+ IL AC
Sbjct: 771 LVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYAC 830

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
            H+GL  EG   F  M  +++++P ++H+ C+V+LLSR G+L EAL  I +MP +PD+ I
Sbjct: 831 CHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSI 890

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
             SLL  C      +LAE +++ + +LEP+N G YV L+N YA + RW  V ++++ +  
Sbjct: 891 WVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGG 950

Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           +GLR+N G SWI++  ++HVF+A +R+HP    I
Sbjct: 951 RGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRI 984



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 181/705 (25%), Positives = 325/705 (46%), Gaps = 114/705 (16%)

Query: 58  KQIREAVDLLTEMKCRNFQIGPEI--YGELLQGCVYKRDMYTGQQIHA--RILKNGDFFA 113
           +++ +A DL   ++      G ++  Y  ++Q C  +R +   ++ HA  R         
Sbjct: 74  QRLCQAGDLAGALRLLGSDGGVDVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGG 133

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVFSWAAIIGLNCRVGLSEKALIGFV 171
           +   +  +LV+ Y KC  L  A  +F  +  +  +V  W +++    + G  ++A+  F 
Sbjct: 134 KGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFR 193

Query: 172 EMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCG 231
           +MQ  GVSPD   +  VLK   +LG +  G  +HG + K+G      VA++LI +Y +CG
Sbjct: 194 QMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCG 253

Query: 232 DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
            +E+A +VFD M  R+ ++WNSMI G   NG +  A+ +F +M  +G E + V+V S+L 
Sbjct: 254 RMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLP 313

Query: 292 ASANLDALDEGKQAHAVAVINGM--ELDNV--------LGSSIINFYSKVGLLEDAEVVF 341
           A A L     GK  H  +V +G+   LD+V        LGS ++  Y K G +  A  VF
Sbjct: 314 ACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVF 373

Query: 342 SRMVER-DIVTWNLLIASYVQSGQ------------------------------------ 364
             M  + ++  WNL++  Y + G+                                    
Sbjct: 374 DAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCA 433

Query: 365 ----------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                           +   V ++++  YAK   I +A  VFN +  +D + WN++++  
Sbjct: 434 RDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGC 493

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIIS-------------W--NSVILGF-LRNGQMNEA 452
           +  G + EA  LF +M  +G   + ++             W    V+ G+ ++ G + E 
Sbjct: 494 SSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGET 553

Query: 453 K------DMFLQ----------MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
                  DM+             +S+G Q N+++WT +I+   +    ++     QEM+ 
Sbjct: 554 SLANALLDMYSNCSDWQSTNQIFRSMG-QKNVVSWTAMITSYMRAGLFDKVAGLLQEMVL 612

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
            GI+P    +T AL A     SL+ G+++HGY IR+ +    P+  +L++MY KC N+ +
Sbjct: 613 DGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEE 672

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A+ +FD   +K++  +N +I GY+ +    E+ +LF ++  +   P+++T T IL A + 
Sbjct: 673 ARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAAS 731

Query: 617 AGLVNEGLELFV-----GMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
              +  G E+       G   D     ++      V++  +CG L
Sbjct: 732 ISSLERGREIHAYALRRGFLEDSYASNAL------VDMYVKCGAL 770



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 129/277 (46%), Gaps = 13/277 (4%)

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           ++L +L+ G + EA+ +F  M       ++  WT+L+S   +     EA+  F++M   G
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAA--DVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCG 199

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           + P    ++C L   + + SL  G  IHG L +  L     +  +L+ +Y++CG +  A 
Sbjct: 200 VSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAA 259

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA- 617
           RVFD    ++   +N+MI G   +G    A+ LF  +  +G +  S+T  ++L AC+   
Sbjct: 260 RVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLG 319

Query: 618 -GLVNEGLE-------LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669
            GL+ + +        L  G+ S             +V +  +CG++  A RV   M   
Sbjct: 320 YGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSK 379

Query: 670 PDAHIIGSLLSTCVKSNETE--LAEYISEHLLQLEPD 704
            + H+   ++    K  E E  L+ ++  H L + PD
Sbjct: 380 GNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPD 416


>gi|224080081|ref|XP_002306009.1| predicted protein [Populus trichocarpa]
 gi|222848973|gb|EEE86520.1| predicted protein [Populus trichocarpa]
          Length = 870

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 251/758 (33%), Positives = 405/758 (53%), Gaps = 54/758 (7%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGEL-LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           E + L  EM   N+     +   + L  C    D+Y G+ ++   +K+G     +     
Sbjct: 112 ETLRLFREMHGANYPKPSSVTAAIVLPVCARLGDVYMGRSVNCYAIKSG--LDTHTLAGN 169

Query: 121 KLVVFYAKCDAL-DVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
            LV  YAKC  +   A   F  +  K+V SW AII       L E A   F  M +  + 
Sbjct: 170 ALVSMYAKCGLVCQDAYAAFDSIDEKDVVSWNAIISGFAENNLMEDAFRLFSSMLKGQIK 229

Query: 180 PDNFVLPNVLKACGALG-----WVGFGRAVHGYVLKVG-FDGCVFVASSLIDMYGKCGDL 233
           P+   L N+L  C +       W  FG+ +HGYVL+       VFV ++L+  Y + G +
Sbjct: 230 PNYTTLANILPVCASFDEYIAYW--FGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRV 287

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSA 292
           EEA  +F  M  R++V+WN++I GY  NG   +A+ +F+E+ TL+ +EP  V++  I+ A
Sbjct: 288 EEAELLFRRMELRDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPA 347

Query: 293 SANLDALDEGKQAHAVAVINGMEL-DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
            A    L  GK  H   + + +   D  +G+++++FY+K   +E A   F  +  RD+++
Sbjct: 348 CAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDDIEGAYETFFMISRRDLIS 407

Query: 352 WNLLIASYVQSGQS-----------------DVVVASSIVDMYAKCERIDNAKQVFNSII 394
           WN ++ + V+SG +                 D V   S+V       + D  K+  +  I
Sbjct: 408 WNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTILSVVHFCVNVLKEDKVKEAHSYSI 467

Query: 395 LRDVV---------LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
              ++         + N +L AYA  G    AS++F  +     + N++++ ++I G++ 
Sbjct: 468 RHRLLASKFDVEPTIGNAILDAYAKCGNIEYASKVFQSLSE---NRNLVTFKAIISGYIN 524

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
            G ++EA   F +M S     +L  W  ++    +N C ++A+  F E+   GIKP   T
Sbjct: 525 CGLLDEAYITFNRMPS----SDLSVWNLMVRLYAENDCSSQALGLFHELQAHGIKPDAVT 580

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRH---DLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
           I   L AC ++AS++  +  HGY IR    DL L      +L D+YAKCG+I  A ++F 
Sbjct: 581 IMSLLPACAEMASVQLIKQCHGYAIRSCFGDLHLDG----ALQDVYAKCGSIGYAFKLFQ 636

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
           + P+K+L ++ AMI GYAMHG+  EAL  F ++ + GI PD +  T +L+ACSHAGLV+E
Sbjct: 637 LIPNKDLIIFTAMIRGYAMHGMGKEALGTFFHMIELGIKPDHVIITTVLSACSHAGLVDE 696

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           GL +F  +   H +K +ME + CVV+LL+R G +D+A  ++  MP + +A+I G+LL  C
Sbjct: 697 GLNIFYSIEKVHGMKLTMEQYSCVVDLLARGGRIDDAFSMVTGMPIEANANIWGTLLGAC 756

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
              +E EL  ++++ L ++E +N GNYV LSN YAA  RW+ V ++R +M+ + L+K  G
Sbjct: 757 RTHHEVELGRFVADRLFKIEAENIGNYVVLSNLYAADARWDGVMEIRKLMRTRDLKKPAG 816

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           CSWI++    +VFVA D SHP   +IY  L+ L   ++
Sbjct: 817 CSWIEVERRKNVFVAGDTSHPHRIDIYRILSTLNGQIK 854



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 133/530 (25%), Positives = 264/530 (49%), Gaps = 90/530 (16%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D   + ++LK+C  L  + +GRA+HG ++++G   C  V+ +L++MY KCG L+E++K+F
Sbjct: 23  DYQAVASILKSCAGLSAIKWGRALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKKLF 82

Query: 241 DGMIA----RNVVAWNSMIVGYVQNGL-NEEAIRVFYEMTLEGV-EPTRVSVTSILSASA 294
            G I     R+ + WN ++ GY  + + + E +R+F EM      +P+ V+   +L   A
Sbjct: 83  -GEIGSCNDRDPIFWNILLSGYAGSRVYDAETLRLFREMHGANYPKPSSVTAAIVLPVCA 141

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL-EDAEVVFSRMVERDIVTWN 353
            L  +  G+  +  A+ +G++   + G+++++ Y+K GL+ +DA   F  + E+D+V+WN
Sbjct: 142 RLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVVSWN 201

Query: 354 LLIASYVQSGQSDVVVA--------------SSIVDMYAKCERIDN------AKQVFNSI 393
            +I+ + ++   +                  +++ ++   C   D        K++   +
Sbjct: 202 AIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANILPVCASFDEYIAYWFGKEIHGYV 261

Query: 394 -----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
                +L DV +WN L++ Y  +GR  EA  LF +M+L     +++SWN++I G+  NG+
Sbjct: 262 LRHNELLADVFVWNALVSFYLRVGRVEEAELLFRRMELR----DLVSWNAIIAGYASNGE 317

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
            ++A ++F ++ +L +                                  I+P + T+ C
Sbjct: 318 WSKALELFHELLTLDM----------------------------------IEPDSVTLLC 343

Query: 509 ALSACTDVASLRNGRAIHGYLIRHD-LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
            + AC    +L  G+ IHGY++RH  LC  T +  +LV  YAKC +I  A   F +   +
Sbjct: 344 IIPACAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDDIEGAYETFFMISRR 403

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC-----------SH 616
           +L  +N+M+      G     L L + +  +G  PDS+T  ++++ C           +H
Sbjct: 404 DLISWNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTILSVVHFCVNVLKEDKVKEAH 463

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           +  +   L     + S   V+P++ +   +++  ++CGN++ A +V  ++
Sbjct: 464 SYSIRHRL-----LASKFDVEPTIGN--AILDAYAKCGNIEYASKVFQSL 506



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 120/272 (44%), Gaps = 37/272 (13%)

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
           V P L  W T+IS      C  +             +     +   L +C  +++++ GR
Sbjct: 2   VGPYLKAWNTMIS-----DCNGD------------FRQDYQAVASILKSCAGLSAIKWGR 44

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI--SPSKELPVY-NAMISGYA 580
           A+HG ++R        +  +L++MYAKCG + ++K++F    S +   P++ N ++SGYA
Sbjct: 45  ALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKKLFGEIGSCNDRDPIFWNILLSGYA 104

Query: 581 MHGLA-VEALALFKNLQQKGI-DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
              +   E L LF+ +       P S+T   +L  C+  G V  G  +     + + +K 
Sbjct: 105 GSRVYDAETLRLFREMHGANYPKPSSVTAAIVLPVCARLGDVYMGRSV-----NCYAIKS 159

Query: 639 SMEHF----GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            ++        +V++ ++CG + +          + D     +++S   ++N  E A  +
Sbjct: 160 GLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVVSWNAIISGFAENNLMEDAFRL 219

Query: 695 SEHLL--QLEPDNPGNYVALSNAYAASGRWNE 724
              +L  Q++P    NY  L+N       ++E
Sbjct: 220 FSSMLKGQIKP----NYTTLANILPVCASFDE 247


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 246/778 (31%), Positives = 402/778 (51%), Gaps = 85/778 (10%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           E +  +L+ C  +R +  G+Q+H+RI K    F  + ++  KLV  Y KC +LD A ++F
Sbjct: 81  EAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVF 139

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +  +  F+W  +IG     G    AL  +  M+ +GV       P +LKAC  L  + 
Sbjct: 140 DEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIR 199

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGY 258
            G  +H  ++K+G+    F+ ++L+ MY K  DL  AR++FDG   + + V WNS++  Y
Sbjct: 200 SGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSY 259

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             +G + E + +F EM + G  P   ++ S L+A         GK+ HA  + +      
Sbjct: 260 STSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSE 319

Query: 319 V-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ---------------- 361
           + + +++I  Y++ G +  AE +  +M   D+VTWN LI  YVQ                
Sbjct: 320 LYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIA 379

Query: 362 ----------------SGQ--------------------SDVVVASSIVDMYAKCERIDN 385
                           SG+                    S++ V ++++DMY+KC     
Sbjct: 380 AGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCY 439

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY-----QMQL-EGISPNIISWNSV 439
             + F  +  +D++ W T++A YA      EA  LF      +M++ E I  +I+  +SV
Sbjct: 440 MGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSV 499

Query: 440 ILGFL----------RNGQM-----NEAKDMFLQMQSLGVQ---------PNLITWTTLI 475
           +   L          R G +     NE  D++ + +++G            ++++WT++I
Sbjct: 500 LKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 559

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           S    N   +EA+  F+ M+ETG+   +  + C LSA   +++L  GR IH YL+R   C
Sbjct: 560 SSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFC 619

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           L   I  ++VDMYA CG++  AK VFD    K L  Y +MI+ Y MHG    A+ LF  +
Sbjct: 620 LEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKM 679

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           + + + PD I+F  +L ACSHAGL++EG      M  +++++P  EH+ C+V++L R   
Sbjct: 680 RHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANC 739

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           + EA   +  M  +P A +  +LL+ C   +E E+ E  ++ LL+LEP NPGN V +SN 
Sbjct: 740 VVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNV 799

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           +A  GRWN+V +VR  MK  G+ K+PGCSWI++  ++H F A D+SHP+++EIY  L+
Sbjct: 800 FAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLS 857



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 160/615 (26%), Positives = 272/615 (44%), Gaps = 106/615 (17%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           A+ L   M+     +G   +  LL+ C   RD+ +G ++H+ ++K G  +    ++   L
Sbjct: 166 ALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLG--YHSTGFIVNAL 223

Query: 123 VVFYAKCDALDVASRLFCRLRVK-NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           V  YAK D L  A RLF   + K +   W +I+      G S + L  F EM   G +P+
Sbjct: 224 VSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPN 283

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC-VFVASSLIDMYGKCGDLEEARKVF 240
           ++ + + L AC    +   G+ +H  VLK       ++V ++LI MY +CG + +A ++ 
Sbjct: 284 SYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERIL 343

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
             M   +VV WNS+I GYVQN + +EA+  F +M   G +   VS+TSI++AS  L  L 
Sbjct: 344 RQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLL 403

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G + HA  + +G + +  +G+++I+ YSK  L       F RM ++D+++W  +IA Y 
Sbjct: 404 AGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYA 463

Query: 361 QS---------------------------------------------------GQSDVVV 369
           Q+                                                   G  D V+
Sbjct: 464 QNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVI 523

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
            + +VD+Y KC  +  A +VF SI  +DVV W +++++ A  G   EA  LF +M   G+
Sbjct: 524 QNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGL 583

Query: 430 SPNIISW----------------NSVILGFLRN-------------------GQMNEAKD 454
           S + ++                   +    LR                    G +  AK 
Sbjct: 584 SADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKA 643

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F +++  G    L+ +T++I+    + CG  A+  F +M    + P   +    L AC+
Sbjct: 644 VFDRIERKG----LLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 699

Query: 515 DVASLRNGRAIHGYL--IRHDLCL-PTP-IVTSLVDMYAKCGNIHQA---KRVFDISPSK 567
               L  GR   G+L  + H+  L P P     LVDM  +   + +A    ++    P+ 
Sbjct: 700 HAGLLDEGR---GFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTA 756

Query: 568 ELPVYNAMISGYAMH 582
           E  V+ A+++    H
Sbjct: 757 E--VWCALLAACRSH 769



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 134/244 (54%), Gaps = 7/244 (2%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA++L  ++  +  +I   I G +L+     + M   ++IH  IL+ G     +  ++ +
Sbjct: 470 EALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLL---DTVIQNE 526

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           LV  Y KC  +  A+R+F  ++ K+V SW ++I  +   G   +A+  F  M E G+S D
Sbjct: 527 LVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSAD 586

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGF--DGCVFVASSLIDMYGKCGDLEEARKV 239
           +  L  +L A  +L  +  GR +H Y+L+ GF  +G + VA  ++DMY  CGDL+ A+ V
Sbjct: 587 SVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVA--VVDMYACCGDLQSAKAV 644

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD +  + ++ + SMI  Y  +G  + A+ +F +M  E V P  +S  ++L A ++   L
Sbjct: 645 FDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLL 704

Query: 300 DEGK 303
           DEG+
Sbjct: 705 DEGR 708



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 119/280 (42%), Gaps = 43/280 (15%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTP----IVTSLVDMYAKCGNIHQAKRVFDISP 565
           L  C    ++  GR +H  + +     P+     +   LV MY KCG++  A++VFD  P
Sbjct: 87  LELCGKRRAVSQGRQLHSRIFK---TFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMP 143

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            +    +N MI  Y  +G    ALAL+ N++ +G+     +F  +L AC+    +  G E
Sbjct: 144 DRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSE 203

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLL----SRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           L   +     VK      G +VN L    ++  +L  A R+        DA +  S+LS+
Sbjct: 204 LHSLL-----VKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSS 258

Query: 682 CVKSNET-ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
              S ++ E  E   E  + +    P +Y  +S                       L   
Sbjct: 259 YSTSGKSLETLELFRE--MHMTGPAPNSYTIVS----------------------ALTAC 294

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            G S+ ++G+E+H  V    +H  + E+Y   AL+ M+ R
Sbjct: 295 DGFSYAKLGKEIHASVLKSSTH--SSELYVCNALIAMYTR 332


>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
 gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
          Length = 899

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 249/804 (30%), Positives = 406/804 (50%), Gaps = 105/804 (13%)

Query: 67  LTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFY 126
           + ++K  +  + P  Y  LLQ C  ++    G+ +H  IL +G     N Y++  L+  Y
Sbjct: 14  INQLKKSSESLQPARYASLLQKCTEQKSAAAGKLVHQHILSSG--CGVNRYIQNHLIFMY 71

Query: 127 AKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
           AKC  L+ A  +F  L   NVFSW A+I    + G   + L  F +MQ DG  PD FV  
Sbjct: 72  AKCGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFS 131

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
            VL AC + G +  G+A+H   +  G +  V V ++++++YGKCG + EA+ VF+ +  R
Sbjct: 132 TVLTACSSAGALNEGKAIHDCAVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPER 190

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQA 305
           N+V+WN++I    QNG  ++A++VF+ M L+G V P   +  S++ A +NL  L  GK  
Sbjct: 191 NLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKST 250

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-- 363
           H   +  G +    +G+S++N Y K G ++ A +VF +M  R++V+W ++I +Y Q G  
Sbjct: 251 HERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWAYAQQGFI 310

Query: 364 -----------------------------------------------QSDVVVASSIVDM 376
                                                           SD V+   +V M
Sbjct: 311 RAAFDLYKRMDCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDAVLQVCLVTM 370

Query: 377 YAKCERIDNAKQVFNSIILR--DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
           Y KC  +D+A  +F ++  R  + V WN +++  A  G S +A   F++M+LEG+ PN +
Sbjct: 371 YGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRPNSV 430

Query: 435 SW----------------------------------NSVILGFLRNGQMNEAKDMFLQMQ 460
           ++                                  N+VI  + + G ++EA D F +M 
Sbjct: 431 TYLASLEACSSLNDLTRGRQLHARILLENIHEANLSNAVINMYGKCGSLDEAMDEFAKMP 490

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
               + ++++W T+I+   Q+  G +A+ FF++M   G      T   A+ AC  V SL 
Sbjct: 491 ----ERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRATYLGAIDACGSVPSLA 546

Query: 521 NGRAIHGYLIRHDLCLPTP--IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
            G+ IH  +     CL     + T+LV MYA+CG++H AK VF  S S+ L  ++ +I+ 
Sbjct: 547 LGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAA 606

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
            A HG   EAL LF+ +Q +G  PD++TF+ ++ ACS  G+V +G+  FV M  D+ +  
Sbjct: 607 CAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGVFYFVSMVEDYSIPA 666

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
           S +HFG +V+LL R G L+EA +V+   PC   AH +  LL  C    + E    I++  
Sbjct: 667 SEDHFGGMVDLLGRAGWLEEAEQVMRKNPC-ALAHAV--LLGACHVHGDVERGIRIAQSA 723

Query: 699 LQLEPDNPGNYVA----LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC-SWIQIGEELH 753
           L+L+  N  ++ A    L+  Y A+GRW + ++VR  ++ +  R+ PG  SWI++   +H
Sbjct: 724 LELDWKNSASFAASMAMLAELYGAAGRWEDAARVRKAVESRNARREPGGRSWIEVKNRVH 783

Query: 754 VFVACDR--SHPKTEEIYATLALL 775
            F   D     P+ ++I   L  L
Sbjct: 784 EFGEDDDRLQGPRLDKIRGELQRL 807



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 156/592 (26%), Positives = 273/592 (46%), Gaps = 100/592 (16%)

Query: 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVAS 221
           LS +  I  ++   + + P  +   ++L+ C        G+ VH ++L  G     ++ +
Sbjct: 8   LSLQTHINQLKKSSESLQPARYA--SLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQN 65

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
            LI MY KCG LE+A +VF+ +   NV +W ++I  Y + G   E + +F +M L+G +P
Sbjct: 66  HLIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKP 125

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
                +++L+A ++  AL+EGK  H  AV+ GME   V+G++I+N Y K G + +A+ VF
Sbjct: 126 DAFVFSTVLTACSSAGALNEGKAIHDCAVLAGMET-QVVGNAIVNLYGKCGRVHEAKAVF 184

Query: 342 SRMVERDIVTWNLLIASYVQSGQ------------------------------------- 364
            R+ ER++V+WN LIA+  Q+G                                      
Sbjct: 185 ERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDL 244

Query: 365 ----------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                           S + V +S+V+MY KC  +D A+ VF  +  R+VV W  ++ AY
Sbjct: 245 PRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWAY 304

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP-- 466
           A  G    A  L+ +M  E   PN +++ +V+   LR   +  A+ +   M + G     
Sbjct: 305 AQQGFIRAAFDLYKRMDCE---PNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDA 361

Query: 467 -------------------------------NLITWTTLISGLTQNSCGNEAILFFQEML 495
                                          N +TW  +ISGL Q+    +A+  F +M 
Sbjct: 362 VLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESKQALECFWKME 421

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
             G++P++ T   +L AC+ +  L  GR +H  ++  ++     +  ++++MY KCG++ 
Sbjct: 422 LEGVRPNSVTYLASLEACSSLNDLTRGRQLHARILLENI-HEANLSNAVINMYGKCGSLD 480

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           +A   F   P +++  +N MI+ YA HG   +AL  FK +  +G   D  T+   ++AC 
Sbjct: 481 EAMDEFAKMPERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRATYLGAIDACG 540

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEH----FGCVVNLLSRCGNLDEALRVI 663
               +  G  +   + +     P +E        +V + +RCG+L +A  V 
Sbjct: 541 SVPSLALGKTIHSIVAT---AAPCLEQDPGVATALVTMYARCGSLHDAKSVF 589



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 9/200 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I++ ++    R+A++   +M    +      Y   +  C     +  G+ IH+ +
Sbjct: 496 SWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRATYLGAIDACGSVPSLALGKTIHSIV 555

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
                   ++  V T LV  YA+C +L  A  +F R   +N+ +W+ +I    + G   +
Sbjct: 556 ATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENE 615

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG-----FGRAVHGYVLKVGFDGCVFVA 220
           AL  F EMQ  G  PD      ++ AC   G V      F   V  Y +    D      
Sbjct: 616 ALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGVFYFVSMVEDYSIPASEDH----F 671

Query: 221 SSLIDMYGKCGDLEEARKVF 240
             ++D+ G+ G LEEA +V 
Sbjct: 672 GGMVDLLGRAGWLEEAEQVM 691


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/771 (31%), Positives = 394/771 (51%), Gaps = 101/771 (13%)

Query: 95  MYTGQQIHARILKNGDFFA-RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           +  G  +HA +LK+G   + RN      L+ FY+KC     A R F  +      SW+++
Sbjct: 20  LLPGAHLHASLLKSGSLASFRNH-----LISFYSKCRRPCCARRFFDEIPDPCHVSWSSL 74

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           +      GL   A+  F  M+ +GV  + F LP VLK          G  VH   +  GF
Sbjct: 75  VTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---ARLGAQVHAMAMATGF 131

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFY 272
              VFVA++L+ MYG  G +++AR+VF+   + RN V+WN ++  YV+N    +AI+VF 
Sbjct: 132 GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFG 191

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
           EM   G++PT    + +++A      ++ G+Q HA+ V  G + D    +++++ Y K+G
Sbjct: 192 EMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMG 251

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ---------------------------- 364
            ++ A V+F +M + D+V+WN LI+  V +G                             
Sbjct: 252 RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILK 311

Query: 365 ------------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
                                   SD  +   +VDMYAK   +D+A++VF+ +  RD++L
Sbjct: 312 ACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLIL 371

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-------------------- 440
            N L++  +  GR  EA  LFY+++ EG+  N  +  +V+                    
Sbjct: 372 CNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAV 431

Query: 441 -LGFLRNGQ--------------MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
            +GF+ +                +++A  +F +  S     ++I  T++I+ L+Q   G 
Sbjct: 432 KIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSS----GDIIACTSMITALSQCDHGE 487

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
            AI  F EML  G++P    ++  L+AC  +++   G+ +H +LI+           +LV
Sbjct: 488 GAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALV 547

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
             YAKCG+I  A+  F   P + +  ++AMI G A HG    AL LF  +  +GI+P+ I
Sbjct: 548 YTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHI 607

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           T T++L AC+HAGLV+E    F  M     +  + EH+ C+++LL R G LD+A+ ++ +
Sbjct: 608 TMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNS 667

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MP   +A I G+LL       + EL +  +E L  LEP+  G +V L+N YA++G WNEV
Sbjct: 668 MPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEV 727

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLG 776
           ++VR +MK+  ++K P  SWI++ +++H F+  D+SHP T+EIYA L  LG
Sbjct: 728 AKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELG 778



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 235/482 (48%), Gaps = 28/482 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+  K  Q  +A+ +  EM     Q     +  ++  C   R++  G+Q+HA +++ G 
Sbjct: 174 MSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG- 232

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            + ++ +    LV  Y K   +D+AS +F ++   +V SW A+I      G   +A+   
Sbjct: 233 -YDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL 291

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           ++M+  G+ P+ F L ++LKAC   G    GR +HG+++K   D   ++   L+DMY K 
Sbjct: 292 LQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKN 351

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             L++ARKVFD M  R+++  N++I G    G ++EA+ +FYE+  EG+   R ++ ++L
Sbjct: 352 HFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            ++A+L+A    +Q HA+AV  G   D  + + +I+ Y K   L DA  VF      DI+
Sbjct: 412 KSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDII 471

Query: 351 TWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
               +I +  Q                   + D  V SS+++  A     +  KQV   +
Sbjct: 472 ACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 394 ILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           I R    D    N L+  YA  G   +A   F  +   G    ++SW+++I G  ++G  
Sbjct: 532 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERG----VVSWSAMIGGLAQHGHG 587

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITC 508
             A ++F +M   G+ PN IT T+++         +EA  +F  M E  GI  +    +C
Sbjct: 588 KRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSC 647

Query: 509 AL 510
            +
Sbjct: 648 MI 649



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 4/207 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++LS+      A+ L  EM  +  +  P +   LL  C        G+Q+HA ++K   
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ- 535

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +    LV  YAKC +++ A   F  L  + V SW+A+IG   + G  ++AL  F
Sbjct: 536 -FMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELF 594

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFVASSLIDMYGK 229
             M ++G++P++  + +VL AC   G V   +     + ++ G D      S +ID+ G+
Sbjct: 595 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 654

Query: 230 CGDLEEARKVFDGM-IARNVVAWNSMI 255
            G L++A ++ + M    N   W +++
Sbjct: 655 AGKLDDAMELVNSMPFQANASIWGALL 681


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/771 (31%), Positives = 395/771 (51%), Gaps = 101/771 (13%)

Query: 95  MYTGQQIHARILKNGDFFA-RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           +  G  +HA +LK+G   + RN      L+ FY+KC     A R+F  +      SW+++
Sbjct: 20  LLPGAHLHASLLKSGSLASFRNH-----LISFYSKCRRPCCARRVFDEIPDPCHVSWSSL 74

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           +      GL   A+  F  M+ +GV  + F LP VLK          G  VH   +  GF
Sbjct: 75  VTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---ARLGAQVHAMAMATGF 131

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFY 272
              VFVA++L+ MYG  G +++AR+VF+   + RN V+WN ++  YV+N    +AI+VF 
Sbjct: 132 GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFG 191

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
           EM   G++PT    + +++A      ++ G+Q HA+ V  G + D    +++++ Y K+G
Sbjct: 192 EMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMG 251

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ---------------------------- 364
            ++ A V+F +M + D+V+WN LI+  V +G                             
Sbjct: 252 RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILK 311

Query: 365 ------------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
                                   SD  +   +VDMYAK   +D+A++VF+ +  RD++L
Sbjct: 312 ACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLIL 371

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-------------------- 440
            N L++  +  GR  EA  LFY+++ EG+  N  +  +V+                    
Sbjct: 372 CNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAV 431

Query: 441 -LGFLRNGQ--------------MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
            +GF+ +                +++A  +F +  S     ++I  T++I+ L+Q   G 
Sbjct: 432 KIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSS----GDIIACTSMITALSQCDHGE 487

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
            AI  F EML  G++P    ++  L+AC  +++   G+ +H +LI+           +LV
Sbjct: 488 GAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALV 547

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
             YAKCG+I  A+  F   P + +  ++AMI G A HG    AL LF  +  +GI+P+ I
Sbjct: 548 YTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHI 607

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           T T++L AC+HAGLV+E    F  M     +  + EH+ C+++LL R G LD+A+ ++ +
Sbjct: 608 TMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNS 667

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MP   +A I G+LL       + EL +  +E L  LEP+  G +V L+N YA++G WNEV
Sbjct: 668 MPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEV 727

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLG 776
           ++VR +MK+  ++K P  SWI++ +++H F+  D+SHP T+EIYA L  LG
Sbjct: 728 AKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELG 778



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 235/482 (48%), Gaps = 28/482 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+  K  Q  +A+ +  EM     Q     +  ++  C   R++  G+Q+HA +++ G 
Sbjct: 174 MSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG- 232

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            + ++ +    LV  Y K   +D+AS +F ++   +V SW A+I      G   +A+   
Sbjct: 233 -YDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL 291

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           ++M+  G+ P+ F L ++LKAC   G    GR +HG+++K   D   ++   L+DMY K 
Sbjct: 292 LQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKN 351

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             L++ARKVFD M  R+++  N++I G    G ++EA+ +FYE+  EG+   R ++ ++L
Sbjct: 352 HFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            ++A+L+A    +Q HA+AV  G   D  + + +I+ Y K   L DA  VF      DI+
Sbjct: 412 KSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDII 471

Query: 351 TWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
               +I +  Q                   + D  V SS+++  A     +  KQV   +
Sbjct: 472 ACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 394 ILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           I R    D    N L+  YA  G   +A   F  +   G    ++SW+++I G  ++G  
Sbjct: 532 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERG----VVSWSAMIGGLAQHGHG 587

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITC 508
             A ++F +M   G+ PN IT T+++         +EA  +F  M E  GI  +    +C
Sbjct: 588 KRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSC 647

Query: 509 AL 510
            +
Sbjct: 648 MI 649



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 4/207 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++LS+      A+ L  EM  +  +  P +   LL  C        G+Q+HA ++K   
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ- 535

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +    LV  YAKC +++ A   F  L  + V SW+A+IG   + G  ++AL  F
Sbjct: 536 -FMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELF 594

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFVASSLIDMYGK 229
             M ++G++P++  + +VL AC   G V   +     + ++ G D      S +ID+ G+
Sbjct: 595 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 654

Query: 230 CGDLEEARKVFDGM-IARNVVAWNSMI 255
            G L++A ++ + M    N   W +++
Sbjct: 655 AGKLDDAMELVNSMPFQANASIWGALL 681



 Score = 40.8 bits (94), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 10/188 (5%)

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
           S  TI+  L+      +L  G  +H  L++            L+  Y+KC     A+RVF
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSGSL--ASFRNHLISFYSKCRRPCCARRVF 60

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA--GL 619
           D  P      ++++++ Y+ +GL   A+  F  ++ +G+  +      +L     A  G 
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGA 120

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
               + +  G  SD  V  ++      V +    G +D+A RV      + +A     L+
Sbjct: 121 QVHAMAMATGFGSDVFVANAL------VAMYGGFGFMDDARRVFNEADSERNAVSWNGLM 174

Query: 680 STCVKSNE 687
           S  VK+++
Sbjct: 175 SAYVKNDQ 182


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 249/805 (30%), Positives = 395/805 (49%), Gaps = 124/805 (15%)

Query: 95  MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA-------LDV------------- 134
           + TGQ  HAR+L +G  F    +V   L+  YA+C          DV             
Sbjct: 20  LATGQAAHARMLVSG--FMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTML 77

Query: 135 -----------ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
                      A+ LF  +   +V SW A++   C+ G+   ++   VEM   GV+PD  
Sbjct: 78  TAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRT 137

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
            L  +LKACG L  +  G  +H   +K G +  V   S+L+DMYGKC  LE+A + F GM
Sbjct: 138 TLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGM 197

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
             RN V+W + I G VQN      + +F +M   G+  ++ +  S+  + A +  L   +
Sbjct: 198 GERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTAR 257

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL-------- 355
           Q HA A+ N    D V+G++I++ Y+K   L DA   F  +    +   N +        
Sbjct: 258 QLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTG 317

Query: 356 ---------------------------------IASYVQSGQS-----------DVVVAS 371
                                            +  Y+Q  Q            DV V +
Sbjct: 318 LGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRN 377

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
           +I+D+Y KC+ +  A  VF  +  RD V WN ++AA        +      +M   G+ P
Sbjct: 378 AILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEP 437

Query: 432 NIISWNSVI-----------------------LG------------FLRNGQMNEAKDMF 456
           +  ++ SV+                       LG            + + G + EA+ + 
Sbjct: 438 DDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLH 497

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
                +G Q  L++W ++ISG + N    EA  FF EML+ G+KP   T    L  C ++
Sbjct: 498 ---DRIGGQ-ELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANL 553

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           A++  G+ IHG +I+ ++     I ++LVDMYAKCGN+  +  +F+ +   +   +NAMI
Sbjct: 554 ATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMI 613

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
            GYA+HG   EAL +F+ +QQ  + P+  TF  +L ACSH GL+++G   F  M S +++
Sbjct: 614 CGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKL 673

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
           +P +EHF C+V++L R     EAL+ I +MP + DA I  +LLS C    + E+AE  + 
Sbjct: 674 EPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAAS 733

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
           ++L+L+PD+   Y+ LSN YA SG+W +VS+ R +M++  L+K PGCSWI++  E+H F+
Sbjct: 734 NVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFL 793

Query: 757 ACDRSHPKTEEIYATLALLGMHVRL 781
           A D+ HP++ E+Y  L  L + ++L
Sbjct: 794 AGDKVHPRSREVYEMLNNLIVEMKL 818



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/451 (23%), Positives = 196/451 (43%), Gaps = 57/451 (12%)

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           L A A   AL  G+ AHA  +++G      + + ++  Y++ G    A  VF  M  RD 
Sbjct: 11  LCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDT 70

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
           V+WN ++ +Y  +G +                    A  +F ++   DVV WN LL+ Y 
Sbjct: 71  VSWNTMLTAYAHAGDTGA------------------AASLFGAMPDPDVVSWNALLSGYC 112

Query: 410 DLGRSGEASRLFYQMQLEGISPNIIS----------WNSVILGF------LRNGQMNEAK 453
             G   ++  L  +M   G++P+  +             + LG       ++ G   + +
Sbjct: 113 QRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVR 172

Query: 454 ------DMFLQMQSL--------GV-QPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
                 DM+ + +SL        G+ + N ++W   I+G  QN      +  F +M   G
Sbjct: 173 AGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLG 232

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           +  S         +C  +  L   R +H + I++       + T++VD+YAK  ++  A+
Sbjct: 233 LGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDAR 292

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           R F   P+  +   NAM+ G    GL  EAL LF+ + + GI  D ++ + + +AC+   
Sbjct: 293 RAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVK 352

Query: 619 LVNEGLELF-VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
              +GL++  + + S   V   + +   +++L  +C  L EA  V   M  +    +  +
Sbjct: 353 GYLQGLQVHCLAIKSGFDVDVCVRN--AILDLYGKCKALVEAYLVFQEM--EQRDSVSWN 408

Query: 678 LLSTCVKSNET--ELAEYISEHL-LQLEPDN 705
            +   ++ NE   +   Y++E L   +EPD+
Sbjct: 409 AIIAALEQNECYEDTIAYLNEMLRYGMEPDD 439


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/791 (30%), Positives = 393/791 (49%), Gaps = 94/791 (11%)

Query: 77  IGPEIYGELLQGCVYK-RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVA 135
           +GP  +   L+ C    R      +IHA+ +  G    +   V   L+  Y+K   +  A
Sbjct: 39  LGPLDFACALRACRGNGRRWQVVPEIHAKAVTRG--LGKYRIVGNLLIDLYSKNGLVLPA 96

Query: 136 SRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
            R+F  L  ++  SW A++    + GL E+AL  + +M   GV P  +VL +VL +C   
Sbjct: 97  RRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKA 156

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
                GR +H    K GF   +FV +++I +Y +CG    A +VF  M  R+ V +N++I
Sbjct: 157 ELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLI 216

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            G+ Q G  E A+ +F EM   G+ P  V+++S+L+A A+L  L +G Q H+     G+ 
Sbjct: 217 SGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGIS 276

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY---------------- 359
            D ++  S+++ Y K G +E A V+F+     ++V WNL++ ++                
Sbjct: 277 SDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQM 336

Query: 360 -----------------------------------VQSG-QSDVVVASSIVDMYAKCERI 383
                                              V++G +SD+ V+  ++DMY+K   +
Sbjct: 337 QAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWL 396

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS-------- 435
           + A++V   +  +DVV W +++A Y       +A   F +MQ  GI P+ I         
Sbjct: 397 EKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGC 456

Query: 436 ---------------------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
                                      WN+++  + R G++ EA   F +++      + 
Sbjct: 457 AGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIE----HKDE 512

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           ITW  L+SG  Q+    EA+  F  M ++G+K +  T   ALSA  ++A ++ G+ IH  
Sbjct: 513 ITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHAR 572

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +I+      T +  +L+ +Y KCG+   AK  F     +    +N +I+  + HG  +EA
Sbjct: 573 VIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEA 632

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L LF  ++++GI P+ +TF  +L ACSH GLV EGL  F  M  ++ ++P  +H+ CV++
Sbjct: 633 LDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVID 692

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           +  R G LD A + I  MP   DA +  +LLS C      E+ E+ ++HLL+LEP +  +
Sbjct: 693 IFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSAS 752

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YV LSNAYA + +W    QVR +M+++G+RK PG SWI++   +H F   DR HP  E+I
Sbjct: 753 YVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQI 812

Query: 769 YATLALLGMHV 779
           Y  LA++   V
Sbjct: 813 YNFLAVINDRV 823



 Score =  229 bits (585), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 160/626 (25%), Positives = 278/626 (44%), Gaps = 95/626 (15%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +S  ++     EA+ L  +M        P +   +L  C        G+ IHA+ 
Sbjct: 110 SWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQG 169

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K+G  F    +V   ++  Y +C +  +A R+FC +  ++  ++  +I  + + G  E 
Sbjct: 170 YKHG--FCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEH 227

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  F EMQ  G+SPD   + ++L AC +LG +  G  +H Y+ K G      +  SL+D
Sbjct: 228 ALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLD 287

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y KCGD+E A  +F+     NVV WN M+V + Q     ++  +F +M   G+ P + +
Sbjct: 288 LYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFT 347

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
              IL        +D G+Q H+++V  G E D  +   +I+ YSK G LE A  V   + 
Sbjct: 348 YPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK 407

Query: 346 ERDIVTWNLLIASYVQ-------------------------------------------- 361
           E+D+V+W  +IA YVQ                                            
Sbjct: 408 EKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQ 467

Query: 362 -------SGQS-DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                  SG S DV + +++V++YA+C RI  A   F  I  +D + WN L++ +A  G 
Sbjct: 468 IHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGL 527

Query: 414 SGEASRLFYQMQLEGISPNIISW-----------------------------------NS 438
             EA ++F +M   G+  N+ ++                                   N+
Sbjct: 528 HEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNA 587

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I  + + G   +AK  F +M     + N ++W T+I+  +Q+  G EA+  F +M + G
Sbjct: 588 LISLYGKCGSFEDAKMEFSEMS----ERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEG 643

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP-IVTSLVDMYAKCGNIHQA 557
           IKP+  T    L+AC+ V  +  G +    +       P P     ++D++ + G + +A
Sbjct: 644 IKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRA 703

Query: 558 KRVFDISP-SKELPVYNAMISGYAMH 582
           K+  +  P + +  V+  ++S   +H
Sbjct: 704 KKFIEEMPIAADAMVWRTLLSACKVH 729


>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
          Length = 799

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/686 (32%), Positives = 367/686 (53%), Gaps = 35/686 (5%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           R+      ++  Y+    +  A  LF  +   +V SW A++   C+ G+ ++++  FVEM
Sbjct: 81  RDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEM 140

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              GVSPD      +LK+C AL  +  G  VH   +K G +  V   S+L+DMYGKC  L
Sbjct: 141 ARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSL 200

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           ++A   F GM  RN V+W S I G VQN      + +F EM   G+  ++ S  S   + 
Sbjct: 201 DDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSC 260

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A +  L+ G+Q HA A+ N    D V+G++I++ Y+K   L DA   F  +    + T N
Sbjct: 261 AAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSN 320

Query: 354 LLIAS---------------------------YVQSGQSDVVVASSIVDMYAKCERIDNA 386
            ++                             Y    Q   +   S++D+Y KC+ +  A
Sbjct: 321 AMMVGLFMIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIKSVLDLYGKCKALMEA 380

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
             +F  +  +D V WN ++AA    G   +    F +M    +  +    ++V+  + + 
Sbjct: 381 YLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM----LRFDAFVASTVVDMYCKC 436

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G ++EA+ +      +G Q  +++W  ++SG + N     A  FF EML+ G+KP   T 
Sbjct: 437 GIIDEAQKLH---DRIGGQ-QVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTF 492

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
              L  C ++A++  G+ IHG +I+ ++     I ++LVDMYAKCG++  +  VF+    
Sbjct: 493 ATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK 552

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           ++   +NAMI GYA+HGL VEAL +F+ +Q++ + P+  TF  +L ACSH GL ++G   
Sbjct: 553 RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRY 612

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  M + ++++P +EHF C+V++L R     EA++ I +MP   DA I  +LLS C    
Sbjct: 613 FHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQ 672

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
           + E+AE  + ++L L+PD+   Y+ LSN YA SG+W +VS+ R ++K+  L+K PGCSWI
Sbjct: 673 DVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWI 732

Query: 747 QIGEELHVFVACDRSHPKTEEIYATL 772
           +   E+H F+  D++HP++ E+Y  L
Sbjct: 733 EAQSEMHGFLVGDKAHPRSGELYEML 758



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 140/561 (24%), Positives = 245/561 (43%), Gaps = 74/561 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S   +    +E+VDL  EM  R        +  LL+ C    ++  G Q+HA  +K G 
Sbjct: 121 VSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTG- 179

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +    + LV  Y KC +LD A   F  +  +N  SW + I    +     + L  F
Sbjct: 180 -LEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELF 238

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           +EMQ  G+        +  ++C A+  +  GR +H + +K  F     V ++++D+Y K 
Sbjct: 239 IEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKA 298

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             L +AR+ F G+    V   N+M+VG                M    +    VS++ + 
Sbjct: 299 NSLTDARRAFFGLPNHTVETSNAMMVGLF--------------MIRSSIRFDVVSLSGVF 344

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA A       G+Q H +A+            S+++ Y K   L +A ++F  M ++D V
Sbjct: 345 SACAETKGYFPGQQVHCLAI-----------KSVLDLYGKCKALMEAYLIFQGMKQKDSV 393

Query: 351 TWNLLIASYVQSGQS-------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
           +WN +IA+  Q+G               D  VAS++VDMY KC  ID A+++ + I  + 
Sbjct: 394 SWNAIIAALEQNGHYDDTILHFNEMLRFDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQ 453

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVI----------LGFLRN 446
           VV WN +L+ ++ L +  EA++ F+   L+ G+ P+  ++ +V+          LG   +
Sbjct: 454 VVSWNAILSGFS-LNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIH 512

Query: 447 GQMNEAK------------DMFLQM----QSLGV-----QPNLITWTTLISGLTQNSCGN 485
           GQ+ + +            DM+ +      SL V     + + ++W  +I G   +  G 
Sbjct: 513 GQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGV 572

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG-RAIHGYLIRHDLCLPTPIVTSL 544
           EA+  F+ M +  + P+  T    L AC+ V    +G R  H     + L         +
Sbjct: 573 EALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACM 632

Query: 545 VDMYAKCGNIHQAKRVFDISP 565
           VD+  +     +A +  +  P
Sbjct: 633 VDILGRSKGPQEAVKFINSMP 653



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 145/611 (23%), Positives = 255/611 (41%), Gaps = 83/611 (13%)

Query: 41  ESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQ 100
           E  + S+   I+   + +Q    ++L  EM+     +    Y    + C     + TG+Q
Sbjct: 212 ERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQ 271

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL-NCR 159
           +HA  +KN   F+ +  V T +V  YAK ++L  A R F               GL N  
Sbjct: 272 LHAHAIKNK--FSSDRVVGTAIVDVYAKANSLTDARRAF--------------FGLPNHT 315

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
           V  S   ++G   M    +  D   L  V  AC        G+ VH   +K         
Sbjct: 316 VETSNAMMVGLF-MIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIK--------- 365

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
             S++D+YGKC  L EA  +F GM  ++ V+WN++I    QNG  ++ I  F EM    +
Sbjct: 366 --SVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM----L 419

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
                  ++++        +DE ++ H    I G ++  V  ++I++ +S     E A+ 
Sbjct: 420 RFDAFVASTVVDMYCKCGIIDEAQKLH--DRIGGQQV--VSWNAILSGFSLNKESEAAQK 475

Query: 340 VFSRMVERDIVTWNLLIASYVQS--------------GQ-------SDVVVASSIVDMYA 378
            FS M++  +   +   A+ + +              GQ        D  ++S++VDMYA
Sbjct: 476 FFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYA 535

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
           KC  + ++  VF  +  RD V WN ++  YA  G   EA R+F +MQ E + PN  ++ +
Sbjct: 536 KCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVA 595

Query: 439 VILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM--L 495
           V+      G  ++    F L      ++P L  +  ++  L ++    EA+ F   M   
Sbjct: 596 VLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQ 655

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG--- 552
              +   T    C +    ++A L     +   L+  D    + +   L ++YA+ G   
Sbjct: 656 ADAVIWKTLLSICKIRQDVEIAELAASNVL---LLDPD---DSSVYILLSNVYAESGKWA 709

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA-------------LFKNLQQKG 599
           ++ + +R+      K+ P  + + +   MHG  V   A             L   ++  G
Sbjct: 710 DVSRTRRLLKQGRLKKEPGCSWIEAQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMKLSG 769

Query: 600 IDPDSITFTNI 610
            +PDS +F  +
Sbjct: 770 YEPDSASFVEV 780


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/791 (30%), Positives = 395/791 (49%), Gaps = 104/791 (13%)

Query: 79  PEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRL 138
           PE  G  L      R ++ G  +H+ +LK+G     + +    L+  Y++C     A  +
Sbjct: 4   PETIGSALARFGTSRSLFAGAHLHSHLLKSGLLAGFSNH----LLTLYSRCRLPSAARAV 59

Query: 139 FCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
           F  +      SW++++      G+   AL+ F  M+  GV  + F LP VLK       V
Sbjct: 60  FDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPD---V 116

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA----RNVVAWNSM 254
            FG  VH   +       VFVA++L+ +YG  G ++EAR++FD  +     RN V+WN+M
Sbjct: 117 RFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTM 176

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           I  YV+N  + +AI VF EM   G  P     + +++A      L+ G+Q H   V  G 
Sbjct: 177 ISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGY 236

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS--------- 365
           E D    +++++ YSK+G +E A  VF +M   D+V+WN  I+  V  G           
Sbjct: 237 EKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQ 296

Query: 366 -------------------------------------------DVVVASSIVDMYAKCER 382
                                                      D  VA  +VDMYAK   
Sbjct: 297 MKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGF 356

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI--------- 433
           +D+A++VF+ +  RD++LWN L++  +  GR GE   LF++M+ EG+  ++         
Sbjct: 357 LDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVL 416

Query: 434 ------------------------ISWNSVILGFL----RNGQMNEAKDMFLQMQSLGVQ 465
                                   +S + VI G +    + GQ++ A  +F + +S    
Sbjct: 417 KSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRS---- 472

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            ++I+ TT+++ L+Q   G +AI  F +ML  G++P +  ++  L+ACT +++   G+ +
Sbjct: 473 DDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQV 532

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           H +LI+           +LV  YAKCG+I  A   F   P + +  ++AMI G A HG  
Sbjct: 533 HAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHG 592

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
             AL LF  +  +G+ P+ IT T++L+AC+HAGLV++  + F  M     +  + EH+ C
Sbjct: 593 KRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYAC 652

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           ++++L R G L++A+ ++  MP   +A + G+LL       + EL    +E L  LEP+ 
Sbjct: 653 MIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEK 712

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
            G +V L+N YA++G W+E+++VR +MK+  ++K P  SW++I +++H F+  D+SHP T
Sbjct: 713 SGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMT 772

Query: 766 EEIYATLALLG 776
            +IY  LA LG
Sbjct: 773 RDIYGKLAELG 783



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 184/413 (44%), Gaps = 55/413 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKN-G 109
           IS          A++LL +MK             +L+ C        G+QIH  ++K   
Sbjct: 278 ISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVA 337

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
           DF   +E+V   LV  YAK   LD A ++F  +  +++  W A+I      G   + L  
Sbjct: 338 DF---DEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSL 394

Query: 170 FVEMQEDGVSPD--NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
           F  M+++G+  D     L +VLK+  +   +   R VH    K+G      V + LID Y
Sbjct: 395 FHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSY 454

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            KCG L+ A KVF    + ++++  +M+    Q    E+AI++F +M  +G+EP    ++
Sbjct: 455 WKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLS 514

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S+L+A  +L A ++GKQ HA  +      D   G++++  Y+K G +EDA++ FS + ER
Sbjct: 515 SLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPER 574

Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
            IV+W+ +I    Q G                                            
Sbjct: 575 GIVSWSAMIGGLAQHGHGK----------------------------------------- 593

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
                    A  LF++M  EG++PN I+  SV+      G +++AK  F  M+
Sbjct: 594 --------RALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMK 638



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 4/207 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +++LS+     +A+ L  +M  +  +    +   LL  C        G+Q+HA ++K   
Sbjct: 482 MTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQ- 540

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +    LV  YAKC +++ A   F  L  + + SW+A+IG   + G  ++AL  F
Sbjct: 541 -FTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLF 599

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFVASSLIDMYGK 229
             M ++GV+P++  L +VL AC   G V   +     + +  G D      + +ID+ G+
Sbjct: 600 HRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGR 659

Query: 230 CGDLEEARKVFDGM-IARNVVAWNSMI 255
            G LE+A ++ + M    N   W +++
Sbjct: 660 AGKLEDAMELVNNMPFQANAAVWGALL 686


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/791 (30%), Positives = 393/791 (49%), Gaps = 94/791 (11%)

Query: 77  IGPEIYGELLQGCVYK-RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVA 135
           +GP  +   L+ C    R      +IHA+ +  G    +   V   L+  Y+K   +  A
Sbjct: 39  LGPLDFACALRACRGNGRRWQVVPEIHAKAVTRG--LGKYRIVGNLLIDLYSKNGLVLPA 96

Query: 136 SRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
            R+F  L  ++  SW A++    + GL E+AL  + +M   GV P  +VL +VL +C   
Sbjct: 97  RRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKA 156

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
                GR +H    K GF   +FV +++I +Y +CG    A +VF  M  R+ V +N++I
Sbjct: 157 ELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLI 216

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            G+ Q G  E A+ +F EM   G+ P  V+++S+L+A A+L  L +G Q H+     G+ 
Sbjct: 217 SGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGIS 276

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY---------------- 359
            D ++  S+++ Y K G +E A V+F+     ++V WNL++ ++                
Sbjct: 277 SDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQM 336

Query: 360 -----------------------------------VQSG-QSDVVVASSIVDMYAKCERI 383
                                              V++G +SD+ V+  ++DMY+K   +
Sbjct: 337 QAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWL 396

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS-------- 435
           + A++V   +  +DVV W +++A Y       +A   F +MQ  GI P+ I         
Sbjct: 397 EKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGC 456

Query: 436 ---------------------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
                                      WN+++  + R G++ EA   F +++      + 
Sbjct: 457 AGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIE----HKDE 512

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           ITW  L+SG  Q+    EA+  F  M ++G+K +  T   ALSA  ++A ++ G+ IH  
Sbjct: 513 ITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHAR 572

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +I+      T +  +L+ +Y KCG+   AK  F     +    +N +I+  + HG  +EA
Sbjct: 573 VIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEA 632

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L LF  ++++GI P+ +TF  +L ACSH GLV EGL  F  M  ++ ++P  +H+ CV++
Sbjct: 633 LDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVID 692

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           +  R G LD A + I  MP   DA +  +LLS C      E+ E+ ++HLL+LEP +  +
Sbjct: 693 IFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSAS 752

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YV LSNAYA + +W    QVR +M+++G+RK PG SWI++   +H F   DR HP  E+I
Sbjct: 753 YVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQI 812

Query: 769 YATLALLGMHV 779
           Y  LA++   V
Sbjct: 813 YNFLAVINDRV 823



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 160/626 (25%), Positives = 278/626 (44%), Gaps = 95/626 (15%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +S  ++     EA+ L  +M        P +   +L  C        G+ IHA+ 
Sbjct: 110 SWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQG 169

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K+G  F    +V   ++  Y +C +  +A R+FC +  ++  ++  +I  + + G  E 
Sbjct: 170 YKHG--FCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEH 227

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  F EMQ  G+SPD   + ++L AC +LG +  G  +H Y+ K G      +  SL+D
Sbjct: 228 ALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLD 287

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y KCGD+E A  +F+     NVV WN M+V + Q     ++  +F +M   G+ P + +
Sbjct: 288 LYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFT 347

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
              IL        +D G+Q H+++V  G E D  +   +I+ YSK G LE A  V   + 
Sbjct: 348 YPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK 407

Query: 346 ERDIVTWNLLIASYVQ-------------------------------------------- 361
           E+D+V+W  +IA YVQ                                            
Sbjct: 408 EKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQ 467

Query: 362 -------SGQS-DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                  SG S DV + +++V++YA+C RI  A   F  I  +D + WN L++ +A  G 
Sbjct: 468 IHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGL 527

Query: 414 SGEASRLFYQMQLEGISPNIISW-----------------------------------NS 438
             EA ++F +M   G+  N+ ++                                   N+
Sbjct: 528 HEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNA 587

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I  + + G   +AK  F +M     + N ++W T+I+  +Q+  G EA+  F +M + G
Sbjct: 588 LISLYGKCGSFEDAKMEFSEMS----ERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEG 643

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP-IVTSLVDMYAKCGNIHQA 557
           IKP+  T    L+AC+ V  +  G +    +       P P     ++D++ + G + +A
Sbjct: 644 IKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRA 703

Query: 558 KRVFDISP-SKELPVYNAMISGYAMH 582
           K+  +  P + +  V+  ++S   +H
Sbjct: 704 KKFIEEMPIAADAMVWRTLLSACKVH 729


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/823 (29%), Positives = 413/823 (50%), Gaps = 96/823 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+ +K    +E V L  +M+C            +L+       +  G+ IH  + K G 
Sbjct: 170 MSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLG- 228

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
                  V   L+  Y++C  ++ A ++F  +  ++  SW + I      G  ++A+  F
Sbjct: 229 -LGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLF 287

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV---------FVAS 221
            +M  +G    +  + +VL AC  LG+   G+ VHGY +K G    +          + S
Sbjct: 288 SKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGS 347

Query: 222 SLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
            L+ MY KCGD+  AR+VFD M ++ NV  WN ++ GY +    EE++ +F +M   G+ 
Sbjct: 348 KLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGIT 407

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P   +++ +L     L    +G  AH   V  G      + +++I+FY+K  ++++A +V
Sbjct: 408 PDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLV 467

Query: 341 FSRMVERDIVTWN-----------------LLIASYVQSGQSDVV--------------- 368
           F RM  +D ++WN                 L +  ++Q  + D                 
Sbjct: 468 FDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYW 527

Query: 369 --------------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                               +A++++DMY+ C    +  Q+F ++  ++VV W  ++ +Y
Sbjct: 528 FVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSY 587

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF----------------LRNGQ---- 448
              G   + + L  +M L+GI P++ +  SV+ GF                +RNG     
Sbjct: 588 TRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLL 647

Query: 449 --MNEAKDMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
              N   +M++  +++             ++I+W TLI G ++N+  NE+   F +ML  
Sbjct: 648 PVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDML-L 706

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
             KP+T T+TC L A   ++SL  GR IH Y +R      +    +LVDMY KCG +  A
Sbjct: 707 QFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVA 766

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           + +FD    K L  +  MI+GY MHG   +A+ALF+ ++  G++PD+ +F+ IL AC H+
Sbjct: 767 RVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHS 826

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           GL  EG + F  M  +++++P ++H+ C+V+LLS  GNL EA   I +MP +PD+ I  S
Sbjct: 827 GLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVS 886

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           LL  C    + +LAE +++ + +LEP+N G YV L+N YA + RW  V ++++ +  +GL
Sbjct: 887 LLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGL 946

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           R+N GCSWI++  ++HVF+A +R+HP+   I   L  +   +R
Sbjct: 947 RENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARRMR 989



 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 180/680 (26%), Positives = 316/680 (46%), Gaps = 108/680 (15%)

Query: 77  IGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVAS 136
           +G   Y  ++Q C  +R +   ++ HA +++ G        +  +LV+ Y KC  L  A 
Sbjct: 92  VGVRSYCAVVQLCGEERSLEAARRAHA-LVRAGTGGIIGSVLGKRLVLAYLKCGDLGGAR 150

Query: 137 RLFCRL--RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
            +F  +  RV +V  W +++    + G  ++ +  F +MQ  GVSPD   +  VLK   +
Sbjct: 151 MVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIAS 210

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           LG +  G  +HG + K+G      VA++LI +Y +CG +E+A +VFD M AR+ ++WNS 
Sbjct: 211 LGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNST 270

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           I GY  NG ++ A+ +F +M  EG E + V+V S+L A A L     GK  H  ++ +G+
Sbjct: 271 ISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGL 330

Query: 315 ---------ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER-DIVTWNLLIASYVQSGQ 364
                     +D  LGS ++  Y K G +  A  VF  M  + ++  WNL++  Y ++ +
Sbjct: 331 LWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAE 390

Query: 365 ----------------------------------------------------SDVVVASS 372
                                                               +   V ++
Sbjct: 391 FEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNA 450

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI--- 429
           ++  YAK   IDNA  VF+ +  +D + WN++++     G + EA  LF +M ++G    
Sbjct: 451 LISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELD 510

Query: 430 SPNIIS----------W--NSVILGF-LRNGQMNEAK------DMFL---------QMQS 461
           S  ++S          W    V+ G+ ++ G + E        DM+          Q+  
Sbjct: 511 STTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFR 570

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
              Q N+++WT +I+  T+    ++     QEM+  GIKP    +T  L       SL+ 
Sbjct: 571 NMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQ 630

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G+++HGY IR+ +    P+  +L++MY  C N+ +A+ VFD   +K++  +N +I GY+ 
Sbjct: 631 GKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSR 690

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV-----GMFSDHQV 636
           +  A E+ +LF ++  +   P+++T T IL A +    +  G E+       G   D   
Sbjct: 691 NNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYT 749

Query: 637 KPSMEHFGCVVNLLSRCGNL 656
             ++      V++  +CG L
Sbjct: 750 SNAL------VDMYVKCGAL 763



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 143/304 (47%), Gaps = 14/304 (4%)

Query: 413 RSGEASRLFYQMQLEGISPNIIS--WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
           RS EA+R  + +   G    I S     ++L +L+ G +  A+ +F +M       ++  
Sbjct: 108 RSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPR--VADVRV 165

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           WT+L+S   +     E +  F++M   G+ P    ++C L     + S+  G  IHG L 
Sbjct: 166 WTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLE 225

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           +  L     +  +L+ +Y++CG +  A +VFD   +++   +N+ ISGY  +G    A+ 
Sbjct: 226 KLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVD 285

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGL-----VNEGLELFVGMFSDHQVKPSM--EHF 643
           LF  +  +G +  S+T  ++L AC+  G      V  G  +  G+  D +   S   E  
Sbjct: 286 LFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEAL 345

Query: 644 GC-VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE--HLLQ 700
           G  +V +  +CG++  A RV   MP   + H+   ++    K+ E E +  + E  H L 
Sbjct: 346 GSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELG 405

Query: 701 LEPD 704
           + PD
Sbjct: 406 ITPD 409


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/690 (33%), Positives = 372/690 (53%), Gaps = 86/690 (12%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D   L +VL+ C     +  G+ V  ++   GF     + S L  MY  CGDL+EA +VF
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVF 152

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D +     + WN ++    ++G    +I +F +M   GVE    + + +  + ++L +++
Sbjct: 153 DQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVN 212

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G+Q H   + +G    N +G+S++ FY K   ++ A  VF  M ERD+++WN +I  YV
Sbjct: 213 GGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 361 Q------------------------------SGQSDVVVAS------------------- 371
                                          +G +D  + S                   
Sbjct: 273 SNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDR 332

Query: 372 ---SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
              +++DMY+KC  +D+AK VF  +  R VV + +++A YA  G +GEA +LF +M+ EG
Sbjct: 333 FCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 429 ISPNIISWNSVILGFLRNGQMNEAK----------------------DMFLQMQSLGVQ- 465
           ISP++ +  +V+    RN  ++E K                      DM+ +  S+    
Sbjct: 393 ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAE 452

Query: 466 --------PNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTITCALSACTDV 516
                    ++I+W T+I G ++N   NEA+  F  +L E    P   T+ C L AC  +
Sbjct: 453 LVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASL 512

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           ++   GR IHGY++R+       +  SLVDMYAKCG +  A+ +FD   SK+L  +  MI
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMI 572

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +GY MHG   EA+ALF  ++Q GI+PD I+F ++L ACSH+GLV+EG   F  M  + ++
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKI 632

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
           +P++EH+ C+V++L+R GNL +A R I  MP  PDA I G+LL  C   ++ +LAE ++E
Sbjct: 633 EPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAE 692

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
            + +LEP+N G YV ++N YA + +W EV ++R  + ++GLRKNPGCSWI+I   +++FV
Sbjct: 693 KVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFV 752

Query: 757 ACDRSHPKTEEIYATLALLGMHVRLVSKVF 786
           A D S+P+TE+I A L   G+  R++ + +
Sbjct: 753 AGDSSNPETEKIEAFLR--GVRARMIEEGY 780


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/686 (34%), Positives = 363/686 (52%), Gaps = 54/686 (7%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVAS---RLFCRLRVKNVFSWAAII 154
            +Q HA IL+   F   +  + T L+ FYA   +L        L   L    +FS++++I
Sbjct: 19  ARQAHALILRLNLF--SDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLI 76

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD 214
               R       L  F  +    + PD F+LP+ +K+C +L  +  G+ +H +    GF 
Sbjct: 77  HAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFL 136

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
               VASSL  MY KC  + +ARK+FD M  R+VV W++MI GY + GL EEA  +F EM
Sbjct: 137 TDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEM 196

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
              GVEP  VS   +L+   N    DE      + ++ G   D   GS++      VG L
Sbjct: 197 RSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPD---GSTVSCVLPAVGCL 253

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
           ED  VV    V   ++   L          SD  V S+++DMY KC  +    +VF+ + 
Sbjct: 254 ED--VVVGAQVHGYVIKQGL---------GSDKFVVSAMLDMYGKCGCVKEMSRVFDEVE 302

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
             ++   N  L   +  G    A  +F + + + +  N+++W S+I    +NG+  EA +
Sbjct: 303 EMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALE 362

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F  MQ+ GV+PN +T  +LI                                    AC 
Sbjct: 363 LFRDMQAYGVEPNAVTIPSLI-----------------------------------PACG 387

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
           ++++L +G+ IH + +R  +     + ++L+DMYAKCG I  A+R FD   +  L  +NA
Sbjct: 388 NISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNA 447

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           ++ GYAMHG A E + +F  + Q G  PD +TFT +L+AC+  GL  EG   +  M  +H
Sbjct: 448 VMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEH 507

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            ++P MEH+ C+V LLSR G L+EA  +I  MP +PDA + G+LLS+C   N   L E  
Sbjct: 508 GIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIA 567

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           +E L  LEP NPGNY+ LSN YA+ G W+E +++R++MK KGLRKNPG SWI++G ++H+
Sbjct: 568 AEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHM 627

Query: 755 FVACDRSHPKTEEIYATLALLGMHVR 780
            +A D+SHP+ ++I   L  L M ++
Sbjct: 628 LLAGDQSHPQMKDILEKLDKLNMQMK 653



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 228/509 (44%), Gaps = 103/509 (20%)

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV------------- 339
           S++  +L + +QAHA+ +   +  D  L +S+++FY+    L   ++             
Sbjct: 10  SSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTL 69

Query: 340 ---------------------VFSRMVERDIVTWNLLIASYVQS---------GQ----- 364
                                 FS +    ++    L+ S ++S         GQ     
Sbjct: 70  FSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAF 129

Query: 365 -------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                  +D +VASS+  MY KC+RI +A+++F+ +  RDVV+W+ ++A Y+ LG   EA
Sbjct: 130 AAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEA 189

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
             LF +M+  G+ PN++SWN ++ GF  NG  +EA  M                      
Sbjct: 190 KELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGM---------------------- 227

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
                        F+ ML  G  P  +T++C L A   +  +  G  +HGY+I+  L   
Sbjct: 228 -------------FRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSD 274

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             +V++++DMY KCG + +  RVFD     E+   NA ++G + +G+   AL +F   + 
Sbjct: 275 KFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKD 334

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
           + ++ + +T+T+I+ +CS  G   E LELF  M   + V+P+      + +L+  CGN+ 
Sbjct: 335 QKMELNVVTWTSIIASCSQNGKDLEALELFRDM-QAYGVEPNAV---TIPSLIPACGNIS 390

Query: 658 EALR------VILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
             +         L      D ++  +L+    K    +LA    + +  L   N  ++ A
Sbjct: 391 ALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSAL---NLVSWNA 447

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
           +   YA  G+  E  ++  +M + G + +
Sbjct: 448 VMKGYAMHGKAKETMEMFHMMLQSGQKPD 476



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 152/308 (49%), Gaps = 41/308 (13%)

Query: 88  GCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK-- 145
           GC+   D+  G Q+H  ++K G     +++V + ++  Y KC  +   SR+F  +     
Sbjct: 251 GCL--EDVVVGAQVHGYVIKQG--LGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEI 306

Query: 146 ---------------------------------NVFSWAAIIGLNCRVGLSEKALIGFVE 172
                                            NV +W +II    + G   +AL  F +
Sbjct: 307 GSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRD 366

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           MQ  GV P+   +P+++ ACG +  +  G+ +H + L+ G    V+V S+LIDMY KCG 
Sbjct: 367 MQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGR 426

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           ++ AR+ FD M A N+V+WN+++ GY  +G  +E + +F+ M   G +P  V+ T +LSA
Sbjct: 427 IQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSA 486

Query: 293 SANLDALDEGKQAH-AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIV 350
            A     +EG + + +++  +G+E      + ++   S+VG LE+A  +   M  E D  
Sbjct: 487 CAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDAC 546

Query: 351 TWNLLIAS 358
            W  L++S
Sbjct: 547 VWGALLSS 554



 Score = 46.2 bits (108), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 16/169 (9%)

Query: 509 ALSAC--TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS-- 564
           ALS C  +  ASL   R  H  ++R +L   T + TSL+  YA   ++   +    +S  
Sbjct: 4   ALSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSH 63

Query: 565 -PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
            P   L  ++++I  +A        L  F +L    + PD+    + + +C+    ++ G
Sbjct: 64  LPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPG 123

Query: 624 LELFV-----GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
            +L       G  +D  V  S+ H      +  +C  + +A ++   MP
Sbjct: 124 QQLHAFAAASGFLTDSIVASSLTH------MYLKCDRILDARKLFDRMP 166


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/742 (31%), Positives = 386/742 (52%), Gaps = 88/742 (11%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
           ++ ++ + C   ++   G+ ++  +L  G  F  N  V+  ++  + KC  +D+A R F 
Sbjct: 192 VFPKVFKACSELKNYRVGKDVYDYMLSIG--FEGNSCVKGSILDMFIKCGRMDIARRFFE 249

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
            +  K+VF W  ++      G  +KAL    +M+  GV PD             + W   
Sbjct: 250 EIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQ------------VTW--- 294

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-----IARNVVAWNSMI 255
                               +++I  Y + G  EEA K F  M        NVV+W ++I
Sbjct: 295 --------------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALI 334

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV-INGM 314
            G  QNG + EA+ VF +M LEGV+P  +++ S +SA  NL  L  G++ H   + +  +
Sbjct: 335 AGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEEL 394

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIV 374
           + D ++G+S++++Y+K   +E A   F  + + D+V+WN ++A Y   G  +        
Sbjct: 395 DSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHE-------- 446

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI- 433
                 E I+   ++    I  D++ WN L+  +   G    A   F +M   G+ PN  
Sbjct: 447 ------EAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTT 500

Query: 434 -ISWNSVILGFLRNGQMNEAKDMFLQMQ----SLGVQPNLIT------------------ 470
            IS      G +RN ++ +    ++       S GV   LI+                  
Sbjct: 501 TISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSEL 560

Query: 471 -------WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
                  W ++IS   Q+     A+   +EM  + ++ +T T+  AL AC+ +A+LR G+
Sbjct: 561 STRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGK 620

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
            IH ++IR  L     I+ SL+DMY +CG+I +++R+FD+ P ++L  +N MIS Y MHG
Sbjct: 621 EIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHG 680

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
             ++A+ LF+  +  G+ P+ ITFTN+L+ACSH+GL+ EG + F  M +++ + P++E +
Sbjct: 681 FGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQY 740

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
            C+V+LLSR G  +E L  I  MP +P+A + GSLL  C      +LAEY + +L +LEP
Sbjct: 741 ACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEP 800

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHP 763
            + GNYV ++N Y+A+GRW + +++R +MKE+G+ K PGCSWI++  +LH FV  D SHP
Sbjct: 801 QSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHP 860

Query: 764 KTEEIYATLALLGMHVRLVSKV 785
             E+I A +  L   ++ +  V
Sbjct: 861 LMEQISAKMESLYFDIKEIGYV 882



 Score =  298 bits (762), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 190/649 (29%), Positives = 350/649 (53%), Gaps = 31/649 (4%)

Query: 26  SQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGEL 85
           + T    LR+  N+ + +  + F    S+ +   +  A  LL+ M   N     EIY  +
Sbjct: 38  TNTKSQNLRKLTNARQRI--TGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASI 95

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           LQ C    ++  G Q+HA+++ NG      E++ ++L+  Y +   ++ A R+F ++  +
Sbjct: 96  LQKCRKLYNLRLGFQVHAQLVVNG--VDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 153

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           NVFSW AI+ + C +G  E+ +  F  M  +GV PD+FV P V KAC  L     G+ V+
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 213

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
            Y+L +GF+G   V  S++DM+ KCG ++ AR+ F+ +  ++V  WN M+ GY   G  +
Sbjct: 214 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 273

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVLGSSI 324
           +A++   +M L GV+P +V+  +I+S  A     +E  K    +  +   + + V  +++
Sbjct: 274 KALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTAL 333

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
           I    + G   +A  VF +MV   +   ++ IAS V S  +++ +     +++  C +++
Sbjct: 334 IAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAV-SACTNLSLLRHGREIHGYCIKVE 392

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
                       D+++ N+L+  YA   RS E +R  + M  +    +++SWN+++ G+ 
Sbjct: 393 ELDS--------DLLVGNSLVDYYAKC-RSVEVARRKFGMIKQ---TDLVSWNAMLAGYA 440

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
             G   EA ++  +M+  G++P++ITW  L++G TQ   G  A+ FFQ M   G+ P+TT
Sbjct: 441 LRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTT 500

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           TI+ AL+AC  V +L+ G+ IHGY++R+ + L T + ++L+ MY+ C ++  A  VF   
Sbjct: 501 TISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSEL 560

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
            ++++ V+N++IS  A  G +V AL L + +    ++ +++T  + L ACS    + +G 
Sbjct: 561 STRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGK 620

Query: 625 ELFVGMFSDHQ--VKPSMEHFGCVVNLL----SRCGNLDEALRVILTMP 667
           E+       HQ  ++  ++    ++N L     RCG++ ++ R+   MP
Sbjct: 621 EI-------HQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP 662


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 246/808 (30%), Positives = 413/808 (51%), Gaps = 63/808 (7%)

Query: 5   TFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAV 64
           +  T P P       QKP     T  T  + +  S  +   S+   + S ++    REA+
Sbjct: 25  SLQTQPPPSI-----QKPTASPLTSKTPPKPTSPSRST--ASWVDALRSRTRSNDFREAI 77

Query: 65  DLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVV 124
               EM     +     +  +L+     +D+ TG+QIHA  +K G + + +  V   LV 
Sbjct: 78  STYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFG-YGSSSVTVANTLVN 136

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
            Y KC  +    ++F R+  ++  SW + I   CR    E+AL  F  MQ + +   +F 
Sbjct: 137 MYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFT 196

Query: 185 LPNVLKACGALG---WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
           L +V  AC  LG    +  G+ +HGY L+VG D   F  ++L+ MY K G +++++ +F+
Sbjct: 197 LVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFE 255

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
             + R++V+WN+MI  + Q+    EA+  F  M LEGVE   V++ S+L A ++L+ LD 
Sbjct: 256 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 315

Query: 302 GKQAHAVAVINGMELDN-VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           GK+ HA  + N   ++N  +GS++++ Y     +E    VF  ++ R I  WN +I+ Y 
Sbjct: 316 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYA 375

Query: 361 QSGQSD------------------VVVASSIVDMYAKCERIDNAKQVFNSII----LRDV 398
           ++G  +                      +S++     CE   N + +    +      D 
Sbjct: 376 RNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDR 435

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
            + N L+  Y+ +G+   +  +F  M++     + +SWN++I G++ +G+ + A  +  +
Sbjct: 436 YVQNALMDMYSRMGKMDISETIFDSMEVR----DRVSWNTMITGYVLSGRYSNALVLLHE 491

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           MQ +                   +  +       +      KP+  T+   L  C  +A+
Sbjct: 492 MQRM------------------ENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAA 533

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           +  G+ IH Y IR+ L     + ++LVDMYAKCG ++ ++RVF+  P+K +  +N +I  
Sbjct: 534 IAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMA 593

Query: 579 YAMHGLAVEALALFKNLQQKG-----IDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
             MHG   EAL LFKN+  +        P+ +TF  +  ACSH+GL++EGL LF  M  D
Sbjct: 594 CGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHD 653

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSLLSTCVKSNETELAE 692
           H V+P+ +H+ CVV+LL R G L+EA  ++ TMP + D      SLL  C      EL E
Sbjct: 654 HGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGE 713

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
             +++LL LEP+   +YV LSN Y+++G WN+  +VR  M++ G++K PGCSWI+  +E+
Sbjct: 714 VAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEV 773

Query: 753 HVFVACDRSHPKTEEIYATLALLGMHVR 780
           H F+A D SHP++E+++  L  L   +R
Sbjct: 774 HKFMAGDVSHPQSEQLHGFLETLSEKMR 801


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 242/781 (30%), Positives = 387/781 (49%), Gaps = 91/781 (11%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           E  G LL      + +  G  IHA +LK+G F          L+ FY+KC     A R+F
Sbjct: 5   ETIGPLLTRYAATQSLLQGAHIHAHLLKSGLF----AVFRNHLLSFYSKCRLPGSARRVF 60

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +      SW++++       +   AL  F  M+   V  + FVLP VLK        G
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPD---AG 117

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-GMIARNVVAWNSMIVGY 258
           FG  +H   +  G  G +FVA++L+ MYG  G ++EAR VFD     RN V+WN ++  Y
Sbjct: 118 FGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAY 177

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           V+N     A++VF EM   GV+P     + +++A      L+ G++ HA+ +  G + D 
Sbjct: 178 VKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDV 237

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------- 364
              +++++ YSK+G +  A VVF ++ E D+V+WN  I+  V  G               
Sbjct: 238 FTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 365 --------------------------------------SDVVVASSIVDMYAKCERIDNA 386
                                                 SD  +A  +VDMYAK   +D+A
Sbjct: 298 GLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDA 357

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI------ 440
           K+VF+ I  RD+VLWN L++  +   +  EA  LF +M+ EG   N  +  +V+      
Sbjct: 358 KKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASL 417

Query: 441 ---------------LGFLRNGQM-NEAKDMFLQMQSLGV---------QPNLITWTTLI 475
                          LGFL +  + N   D + +   L             ++I +T++I
Sbjct: 418 EAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMI 477

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           + L+Q   G +AI  F EML  G+ P    ++  L+AC  +++   G+ +H +LI+    
Sbjct: 478 TALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFM 537

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
                  +LV  YAKCG+I  A   F   P K +  ++AMI G A HG    AL +F  +
Sbjct: 538 SDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRM 597

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
             + I P+ IT T++L AC+HAGLV+E    F  M     ++ + EH+ C+++LL R G 
Sbjct: 598 VDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGK 657

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           LD+A+ ++ +MP   +A + G+LL+      + EL    +E L  LEP+  G +V L+N 
Sbjct: 658 LDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANT 717

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           YA++G W++V++VR +MK+  ++K P  SW+++ +++H F+  D+SHP+  +IYA L  L
Sbjct: 718 YASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDEL 777

Query: 776 G 776
           G
Sbjct: 778 G 778



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 235/482 (48%), Gaps = 28/482 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+  K  +   AV +  EM     Q     +  ++  C   RD+  G+++HA +++ G 
Sbjct: 174 MSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTG- 232

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            + ++ +    LV  Y+K   + +A+ +F ++   +V SW A I      G  + AL   
Sbjct: 233 -YDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELL 291

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           ++M+  G+ P+ F L ++LKAC   G    GR +HG+++K   D   ++A  L+DMY K 
Sbjct: 292 LQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKH 351

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L++A+KVFD +  R++V WN++I G      + EA+ +F  M  EG +  R ++ ++L
Sbjct: 352 GLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVL 411

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            ++A+L+A+ + +Q HA+A   G   D+ + + +I+ Y K   L  A  VF +    DI+
Sbjct: 412 KSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDII 471

Query: 351 TWNLLIASYVQSGQS-----------------DVVVASSIVDMYAKCERIDNAKQVFNSI 393
            +  +I +  Q                     D  V SS+++  A     +  KQV   +
Sbjct: 472 AFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 394 ILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           I R    DV   N L+  YA  G   +A   F  +  +G    ++SW+++I G  ++G  
Sbjct: 532 IKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKG----VVSWSAMIGGLAQHGHG 587

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITC 508
             A D+F +M    + PN IT T+++         +EA  +F  M E  GI+ +     C
Sbjct: 588 KRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYAC 647

Query: 509 AL 510
            +
Sbjct: 648 MI 649



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 12/231 (5%)

Query: 32  KLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVY 91
           ++ E   SY+ +  ++   I++LS+     +A+ L  EM  +     P +   LL  C  
Sbjct: 460 RVFEKHGSYDII--AFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACAS 517

Query: 92  KRDMYTGQQIHARILKN---GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVF 148
                 G+Q+HA ++K     D FA N  V T     YAKC +++ A   F  L  K V 
Sbjct: 518 LSAYEQGKQVHAHLIKRQFMSDVFAGNALVYT-----YAKCGSIEDADLAFSGLPEKGVV 572

Query: 149 SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208
           SW+A+IG   + G  ++AL  F  M ++ +SP++  + +VL AC   G V   +     +
Sbjct: 573 SWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSM 632

Query: 209 LKV-GFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVG 257
            ++ G +      + +ID+ G+ G L++A ++ + M    N   W +++  
Sbjct: 633 KEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAA 683


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/682 (33%), Positives = 382/682 (56%), Gaps = 19/682 (2%)

Query: 96   YTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
            + G  IH  ++K G     +  V + L+ FY +C +LD+A+++F  +  ++  +W  I+ 
Sbjct: 541  FLGFTIHGGLIKRG-LDNSDTRVVSALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVM 599

Query: 156  LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
            +N + G  EKA+  F  M+  G    +  +  +L+ C        GR +HGYVL++GF+ 
Sbjct: 600  VNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFES 659

Query: 216  CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
             V + +SLI MY + G LE +RKVF+ M+ RN+ +WNS++  Y + G  ++A+ +  EM 
Sbjct: 660  NVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEME 719

Query: 276  LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
              G++P  V+  S+LS  A+     +     A+AV+  +++  +  ++     S +  L 
Sbjct: 720  TCGLKPDIVTWNSLLSGYAS-----KALSRDAIAVLKRIQIAGLKPNT-----SSISSLL 769

Query: 336  DAEVVFSRMVERDIVTWNLLIASYVQSGQ--SDVVVASSIVDMYAKCERIDNAKQVFNSI 393
             A      + E  +V     I  YV   Q   DV V ++++DMY K   +  A+ VF+ +
Sbjct: 770  QA------VYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMM 823

Query: 394  ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
              +++V WN+L++  +  G   EA  L  +M+ EGI  N ++WNS++ G+   G+  +A 
Sbjct: 824  DEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKAL 883

Query: 454  DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
             +  +M+  GV+PN+++WT ++SG ++N      +  F +M E G+ P++ TI+  L   
Sbjct: 884  AVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRIL 943

Query: 514  TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
              ++ L +G+ +H + ++++L     + T+LVDMYAK G++  A  +F    +K L  +N
Sbjct: 944  GCLSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWN 1003

Query: 574  AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
             MI GYAM     E +A+F  + + GI+PD+ITFT++L+ C ++GLV EG + F  M S 
Sbjct: 1004 CMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSH 1063

Query: 634  HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
            + V P++EH  C+V LL R G LDEA   I TMP  PDA I G+ LS+C    + ELAE 
Sbjct: 1064 YGVIPTIEHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEI 1123

Query: 694  ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
              + L  LEP N  NY+ + N Y+   RW +V ++R+ M    +R     SWIQI + +H
Sbjct: 1124 AWKRLQVLEPHNSANYMMMINLYSNLNRWGDVERIRNSMSNNRVRVQDLWSWIQIDQTVH 1183

Query: 754  VFVACDRSHPKTEEIYATLALL 775
            +F A  ++HP   EIY  L  L
Sbjct: 1184 IFYAEGKAHPDEGEIYFELYKL 1205



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 148/514 (28%), Positives = 239/514 (46%), Gaps = 72/514 (14%)

Query: 62   EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
            +AV L   M+    +       +LLQ C  K     G+QIH  +L+ G  F  N  +   
Sbjct: 609  KAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLG--FESNVSMCNS 666

Query: 122  LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
            L+V Y++   L+ + ++F  +  +N+ SW +I+    R+G  + A+    EM+  G+ PD
Sbjct: 667  LIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPD 726

Query: 182  ----NFVL-------------------------PN------VLKACGALGWVGFGRAVHG 206
                N +L                         PN      +L+A    G V  G+A+HG
Sbjct: 727  IVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHG 786

Query: 207  YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE 266
            YV++      V+V ++LIDMY K G L  AR VFD M  +N+VAWNS+I G    GL +E
Sbjct: 787  YVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKE 846

Query: 267  AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI-----NGMELDNVLG 321
            A  +   M  EG++   V+  S++S  A       GK   A+AV+     NG+E + V  
Sbjct: 847  AEALISRMEKEGIKSNAVTWNSLVSGYATW-----GKTEKALAVVGKMKKNGVEPNVVSW 901

Query: 322  SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ---------SGQS------- 365
            ++I++  SK G   +   +F +M E  +   +  I+S ++         SG+        
Sbjct: 902  TAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLK 961

Query: 366  -----DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
                 D  VA+++VDMYAK   + +A ++F  I  + +  WN ++  YA   R  E   +
Sbjct: 962  NNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAV 1021

Query: 421  FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLT 479
            F  M   GI P+ I++ SV+     +G + E    F  M+S  GV P +   + ++  L 
Sbjct: 1022 FNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELLG 1081

Query: 480  QNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            ++   +EA  F + M    +KP  T     LS+C
Sbjct: 1082 RSGYLDEAWDFIRTM---PLKPDATIWGAFLSSC 1112



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 132/312 (42%), Gaps = 72/312 (23%)

Query: 61   REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
            R+A+ +L  ++    +        LLQ       +  G+ IH  +++N  ++  + YVET
Sbjct: 744  RDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWY--DVYVET 801

Query: 121  KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII-------------GLNCRV------- 160
             L+  Y K   L  A  +F  +  KN+ +W ++I              L  R+       
Sbjct: 802  TLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKS 861

Query: 161  ---------------GLSEKALIGFVEMQEDGVSPD---------------NF------- 183
                           G +EKAL    +M+++GV P+               NF       
Sbjct: 862  NAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIF 921

Query: 184  -------VLPN------VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
                   V PN      +L+  G L  +  G+ VH + LK        VA++L+DMY K 
Sbjct: 922  LKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYAKS 981

Query: 231  GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
            GDL+ A ++F G+  + + +WN MI+GY      EE I VF  M   G+EP  ++ TS+L
Sbjct: 982  GDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTSVL 1041

Query: 291  SASANLDALDEG 302
            S   N   + EG
Sbjct: 1042 SVCKNSGLVREG 1053


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/816 (28%), Positives = 403/816 (49%), Gaps = 127/816 (15%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           + +  + Q C  +R +  G++ HA ++ +G  F    +V   L+  Y KC AL+ A ++F
Sbjct: 25  KTFSHIFQECSNRRALKPGKEAHAHMILSG--FTPTVFVTNCLIQMYVKCCALEYAYKVF 82

Query: 140 CRLRVKNVFSWAAIIGLNC----RVGLSE-----------------------------KA 166
             +  +++ SW  ++   C    R+ L++                             K+
Sbjct: 83  EEMPQRDIVSWNTMV-FGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKS 141

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
           +  F++M++ GV  D+  L   LK C  L     G  +HG  +++GFD  V   S+L+DM
Sbjct: 142 IAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDM 201

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           Y KC  LE++  VF  +  +N ++W++ I G VQN      +++F EM  +G+  ++ + 
Sbjct: 202 YAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTY 261

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE 346
            S+  + A L A   G Q H  A+      D ++G++ ++ Y+K   + DA  +FS + +
Sbjct: 262 ASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPD 321

Query: 347 RDIVTWNLLIASYVQSGQ------------------------------------------ 364
            ++ ++N +I  Y ++ Q                                          
Sbjct: 322 HNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQL 381

Query: 365 ----------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
                     S++ VA++I+DMY KC  +  A  +F+ + +RD V WN ++ A       
Sbjct: 382 HGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESE 441

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILG-------------------------------- 442
           G+    F  M    + P+  ++ SV+                                  
Sbjct: 442 GKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSAL 501

Query: 443 ---FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
              + + G M EA+ +  +++    +  +++W  +ISG +      ++  FF  MLE G+
Sbjct: 502 VDMYSKCGMMEEAEKIHYRLE----EQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGV 557

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           +P   T    L  C ++A++  G+ IH  +I+ +L     I ++LVDMY+KCGN+H +  
Sbjct: 558 EPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLL 617

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           +F  +P ++   +NAMI G+A HGL  EAL LF+++  + I P+  TF ++L ACSH G 
Sbjct: 618 MFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGN 677

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
             +GL  F  M S + ++P +EH+ C+V++L R G ++EALR+I  MP + DA I  +LL
Sbjct: 678 AKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLL 737

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           S C      E+AE  +  LL+L+P++   Y  LSN YA +G W +VS++R  M+   L+K
Sbjct: 738 SICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKK 797

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            PGCSWI++ +E+H F+ CD++HPK E IY+ L LL
Sbjct: 798 EPGCSWIEVKDEVHTFLVCDKAHPKCEMIYSLLDLL 833



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/502 (26%), Positives = 222/502 (44%), Gaps = 55/502 (10%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+   +  Q+   + L  EM+ +   +    Y  + + C        G Q+H   
Sbjct: 225 SWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHA 284

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LK    F  +  V T  +  YAKCD +  A +LF  L   N+ S+ A+I    R     +
Sbjct: 285 LKTD--FGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQ 342

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A   F+++Q++  S D   L   L A   +     G  +HG  +K      + VA++++D
Sbjct: 343 AFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILD 402

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MYGKCG L EA  +FD M  R+ V+WN++I    QN    + +  F  M    +EP   +
Sbjct: 403 MYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFT 462

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
             S+L A A   A   G + H   + +GM L   +GS++++ YSK G++E+AE +  R+ 
Sbjct: 463 YGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLE 522

Query: 346 ERDIVTWNLLIASYVQSGQS---------------------------------------- 365
           E+ +V+WN +I+ +    +S                                        
Sbjct: 523 EQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQ 582

Query: 366 ------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                       DV + S++VDMY+KC  + ++  +F     RD V WN ++  +A  G 
Sbjct: 583 IHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGL 642

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL-GVQPNLITWT 472
             EA  LF  M  E I PN  ++ SV+      G   +    F +M S+  ++P L  ++
Sbjct: 643 GEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYS 702

Query: 473 TLISGLTQNSCGNEAILFFQEM 494
            ++  L ++    EA+   Q+M
Sbjct: 703 CMVDILGRSGQVEEALRLIQDM 724



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 132/531 (24%), Positives = 238/531 (44%), Gaps = 77/531 (14%)

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
           R + + I    +N  AL  GK+AHA  +++G      + + +I  Y K   LE A  VF 
Sbjct: 24  RKTFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFE 83

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-DVVLW 401
            M +RDIV+WN ++     +G                  R++ A+ VFNS+    DVV W
Sbjct: 84  EMPQRDIVSWNTMVFGCAGAG------------------RMELAQAVFNSMPHHGDVVSW 125

Query: 402 NTLLAAYADLGRSGEASRLFYQM-----------------------------QLEGISP- 431
           N+L++ Y   G   ++  +F +M                             Q+ GI+  
Sbjct: 126 NSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQ 185

Query: 432 -----NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                ++++ ++++  + +   + ++ D+F ++       N I+W+  I+G  QN     
Sbjct: 186 MGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPD----KNWISWSAAIAGCVQNDQLLR 241

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
            +  F+EM   GI  S +T      +C  +++ R G  +H + ++ D      + T+ +D
Sbjct: 242 GLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLD 301

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MYAKC N+  A ++F + P   L  YNAMI GYA +    +A  LF  LQ+     D ++
Sbjct: 302 MYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVS 361

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN----LLSRCGNLDEALRV 662
            +  L+A +     +EGL+L  G+     +K ++    CV N    +  +CG L EA  +
Sbjct: 362 LSGALSAAAVIKGHSEGLQLH-GL----AIKSNLSSNICVANAILDMYGKCGALVEASGL 416

Query: 663 ILTMPC-DPDAHIIGSLLSTCVKSNETE---LAEYISEHLLQLEPDNPGNYVALSNAYAA 718
              M   DP   +  + + T  + NE+E   L+ + +    ++EPD    Y ++  A A 
Sbjct: 417 FDEMEIRDP---VSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEF-TYGSVLKACAG 472

Query: 719 SGRWNEVSQV--RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEE 767
              ++   +V  R I    GL+   G + + +  +  +    ++ H + EE
Sbjct: 473 QRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEE 523


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/787 (30%), Positives = 391/787 (49%), Gaps = 94/787 (11%)

Query: 77  IGPEIYGELLQGCVYK-RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVA 135
           +GP  +   L+ C    R      +IHA+ +  G    +   V   L+  Y+K   +  A
Sbjct: 39  LGPLDFACALRACRGNGRRWQVVPEIHAKAVTRG--LGKYRIVGNLLIDLYSKNGLVLPA 96

Query: 136 SRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
            R+F  L  ++  SW A++    + GL E+AL  + +M   GV P  +VL +VL +C   
Sbjct: 97  RRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKA 156

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
                GR +H    K GF   +FV +++I +Y +CG    A +VF  M  R+ V +N++I
Sbjct: 157 ELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLI 216

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            G+ Q G  E A+ +F EM   G+ P  V+++S+L+A A+L  L +G Q H+     G+ 
Sbjct: 217 SGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGIS 276

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY---------------- 359
            D ++  S+++ Y K G +E A V+F+     ++V WNL++ ++                
Sbjct: 277 SDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQM 336

Query: 360 -----------------------------------VQSG-QSDVVVASSIVDMYAKCERI 383
                                              V++G +SD+ V+  ++DMY+K   +
Sbjct: 337 QAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWL 396

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS-------- 435
           + A++V   +  +DVV W +++A Y       +A   F +MQ  GI P+ I         
Sbjct: 397 EKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGC 456

Query: 436 ---------------------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
                                      WN+++  + R G++ EA   F +M+      + 
Sbjct: 457 AGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEME----LKDG 512

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           IT   L+SG  Q+    EA+  F  M ++G+K +  T   ALSA  ++A ++ G+ IH  
Sbjct: 513 ITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHAR 572

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +I+      T +  +L+ +Y KCG+   AK  F     +    +N +I+  + HG  +EA
Sbjct: 573 VIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEA 632

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L LF  ++++GI P+ +TF  +L ACSH GLV EGL  F  M  ++ ++P  +H+ CV++
Sbjct: 633 LDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVID 692

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           +  R G LD A + I  MP   DA +  +LLS C      E+ E+ ++HLL+LEP +  +
Sbjct: 693 IFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSAS 752

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YV LSNAYA + +W    QVR +M+++G+RK PG SWI++   +H F   DR HP  E+I
Sbjct: 753 YVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQI 812

Query: 769 YATLALL 775
           Y  LA++
Sbjct: 813 YNFLAVI 819



 Score =  226 bits (575), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 159/626 (25%), Positives = 278/626 (44%), Gaps = 95/626 (15%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +S  ++     EA+ L  +M        P +   +L  C        G+ IHA+ 
Sbjct: 110 SWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQG 169

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K+G  F    +V   ++  Y +C +  +A R+FC +  ++  ++  +I  + + G  E 
Sbjct: 170 YKHG--FCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEH 227

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  F EMQ  G+SPD   + ++L AC +LG +  G  +H Y+ K G      +  SL+D
Sbjct: 228 ALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLD 287

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y KCGD+E A  +F+     NVV WN M+V + Q     ++  +F +M   G+ P + +
Sbjct: 288 LYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFT 347

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
              IL        +D G+Q H+++V  G E D  +   +I+ YSK G LE A  V   + 
Sbjct: 348 YPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK 407

Query: 346 ERDIVTWNLLIASYVQ-------------------------------------------- 361
           E+D+V+W  +IA YVQ                                            
Sbjct: 408 EKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQ 467

Query: 362 -------SGQS-DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                  SG S DV + +++V++YA+C RI  A   F  + L+D +  N L++ +A  G 
Sbjct: 468 IHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGL 527

Query: 414 SGEASRLFYQMQLEGISPNIISW-----------------------------------NS 438
             EA ++F +M   G+  N+ ++                                   N+
Sbjct: 528 HEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNA 587

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I  + + G   +AK  F +M     + N ++W T+I+  +Q+  G EA+  F +M + G
Sbjct: 588 LISLYGKCGSFEDAKMEFSEMS----ERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEG 643

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP-IVTSLVDMYAKCGNIHQA 557
           IKP+  T    L+AC+ V  +  G +    +       P P     ++D++ + G + +A
Sbjct: 644 IKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRA 703

Query: 558 KRVFDISP-SKELPVYNAMISGYAMH 582
           K+  +  P + +  V+  ++S   +H
Sbjct: 704 KKFIEEMPIAADAMVWRTLLSACKVH 729


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/716 (33%), Positives = 377/716 (52%), Gaps = 78/716 (10%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           T +V  Y  C A D A  +  R+       W  +I  + + G  + A+     M   G  
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
            D+F LP+VLKACG L     G A HG +   GF+  VF+ ++L+ MY +CG LEEA  +
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 240 FDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE-PTR-----VSVTSIL 290
           FD +  R   +V++WNS++  +V++     A+ +F +MTL   E PT      +S+ +IL
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A  +L A+ + K+ H  A+ NG  LD  +G+++I+ Y+K GL+E+A  VF+ M  +D+V
Sbjct: 235 PACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 294

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLA 406
           +WN                  ++V  Y++      A ++F ++    I  D+V W  ++A
Sbjct: 295 SWN------------------AMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIA 336

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQ------------- 448
            Y+  G S EA  +F QM   G  PN ++  SV+     LG    G              
Sbjct: 337 GYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLT 396

Query: 449 --------------MNEAKDMFLQMQSLGV-----------QPNLITWTTLISGLTQNSC 483
                          N   DM+ + +S              + N++TWT +I G  Q   
Sbjct: 397 LDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGD 456

Query: 484 GNEAILFFQEMLET--GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP-- 539
            N+A+  F EM+    G+ P+  TI+C L AC  +A++R G+ IH Y++RH     +   
Sbjct: 457 SNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYF 516

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           +   L++MY+KCG++  A+ VFD    K    + +M++GY MHG   EAL +F  +++ G
Sbjct: 517 VANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 576

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
             PD ITF  +L ACSH G+V++GL  F  M +D+ + P  EH+   ++LL+R G LD+A
Sbjct: 577 FVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKA 636

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
            + +  MP +P A +  +LLS C   +  ELAE+    L+++  +N G+Y  +SN YA +
Sbjct: 637 WKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 696

Query: 720 GRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           GRW +V+++R +MK+ G++K PGCSW+Q  +    F   DRSHP + +IYA L  L
Sbjct: 697 GRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 752



 Score =  207 bits (526), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 244/495 (49%), Gaps = 53/495 (10%)

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           + + ++  Y  CG  + A  V + +     V WN +I  +++ G  + AI V   M   G
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
                 ++  +L A   L +   G   H +   NG E +  + ++++  YS+ G LE+A 
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 172

Query: 339 VVFSRMVER---DIVTWNLLIASYVQSG-----------------------QSDVVVASS 372
           ++F  + +R   D+++WN +++++V+S                        +SD++   +
Sbjct: 173 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 232

Query: 373 IVDMYAKCERIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           I+      + +   K+V  + I      DV + N L+ AYA  G    A ++F  M+ + 
Sbjct: 233 ILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK- 291

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
              +++SWN+++ G+ ++G    A ++F  M+   +  +++TWT +I+G +Q  C +EA+
Sbjct: 292 ---DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEAL 348

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT---------- 538
             F++M+ +G  P+  TI   LSAC  + +   G  IH Y +++  CL T          
Sbjct: 349 NVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKN--CLLTLDNDFGGEDE 406

Query: 539 --PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV--YNAMISGYAMHGLAVEALALFKN 594
              +  +L+DMY+KC +   A+ +FD  P +E  V  +  MI G+A +G + +AL LF  
Sbjct: 407 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 466

Query: 595 L--QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLS 651
           +  +  G+ P++ T + IL AC+H   +  G ++   +   HQ   S      C++N+ S
Sbjct: 467 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYS 526

Query: 652 RCGNLDEALRVILTM 666
           +CG++D A  V  +M
Sbjct: 527 KCGDVDTARHVFDSM 541



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 222/501 (44%), Gaps = 88/501 (17%)

Query: 35  ESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRD 94
           +S N++ +L    F +++ +  EK   E  D+++ +              +L  C   + 
Sbjct: 198 KSSNAWTAL--DLFSKMTLIVHEKPTNERSDIISIVN-------------ILPACGSLKA 242

Query: 95  MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSW---- 150
           +   +++H   ++NG F   + +V   L+  YAKC  ++ A ++F  +  K+V SW    
Sbjct: 243 VPQTKEVHGNAIRNGTFL--DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 300

Query: 151 -------------------------------AAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
                                           A+I    + G S +AL  F +M   G  
Sbjct: 301 AGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSL 360

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKV----------GFDGCVFVASSLIDMYGK 229
           P+   + +VL AC +LG    G  +H Y LK           G D  + V ++LIDMY K
Sbjct: 361 PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 420

Query: 230 CGDLEEARKVFDGMI--ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE--GVEPTRVS 285
           C   + AR +FD +    RNVV W  MI G+ Q G + +A+++F EM  E  GV P   +
Sbjct: 421 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 480

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDN---VLGSSIINFYSKVGLLEDAEVVFS 342
           ++ IL A A+L A+  GKQ HA  V+   + D+    + + +IN YSK G ++ A  VF 
Sbjct: 481 ISCILMACAHLAAIRIGKQIHAY-VLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFD 539

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            M ++  ++W  ++  Y   G+      S  +D++ K  +            + D + + 
Sbjct: 540 SMSQKSAISWTSMMTGYGMHGR-----GSEALDIFDKMRKAG---------FVPDDITFL 585

Query: 403 TLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
            +L A +  G   +    F  M  + G++P    +   I    R G++++A   +  ++ 
Sbjct: 586 VVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKA---WKTVKD 642

Query: 462 LGVQPNLITWTTLISGLTQNS 482
           + ++P  + W  L+S    +S
Sbjct: 643 MPMEPTAVVWVALLSACRVHS 663



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 62  EAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           +A+ L  EM    + + P  Y    +L  C +   +  G+QIHA +L++  + +   +V 
Sbjct: 459 DALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVA 518

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
             L+  Y+KC  +D A  +F  +  K+  SW +++      G   +AL  F +M++ G  
Sbjct: 519 NCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV 578

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYV-LKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           PD+     VL AC   G V  G +    +    G        +  ID+  + G L++A K
Sbjct: 579 PDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWK 638

Query: 239 VFDGM-IARNVVAWNSMIVG---YVQNGLNEEAIRVFYEMTLE 277
               M +    V W +++     +    L E A+    EM  E
Sbjct: 639 TVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAE 681


>gi|356518834|ref|XP_003528082.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Glycine max]
          Length = 875

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 246/730 (33%), Positives = 399/730 (54%), Gaps = 47/730 (6%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV-ASRLFCRLR 143
           +L  C    D+  G+ +H  ++K+G  F ++      LV  YAKC  +   A  +F  + 
Sbjct: 152 VLPVCARLGDLDAGKCVHGYVIKSG--FDQDTLGGNALVSMYAKCGLVSHDAYAVFDNIA 209

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW-VGF-- 200
            K+V SW A+I       L E A + F  M +    P+   + N+L  C +    V +  
Sbjct: 210 YKDVVSWNAMIAGLAENRLVEDAFLLFSSMVKGPTRPNYATVANILPVCASFDKSVAYYC 269

Query: 201 GRAVHGYVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           GR +H YVL+       V V ++LI +Y K G + EA  +F  M AR++V WN+ I GY 
Sbjct: 270 GRQIHSYVLQWPELSADVSVCNALISLYLKVGQMREAEALFWTMDARDLVTWNAFIAGYT 329

Query: 260 QNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING-MELD 317
            NG   +A+ +F  + +LE + P  V++ SIL A A L  L  GKQ HA    +  +  D
Sbjct: 330 SNGEWLKALHLFGNLASLETLLPDSVTMVSILPACAQLKNLKVGKQIHAYIFRHPFLFYD 389

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------- 363
             +G+++++FY+K G  E+A   FS +  +D+++WN +  ++ +                
Sbjct: 390 TAVGNALVSFYAKCGYTEEAYHTFSMISMKDLISWNSIFDAFGEKRHHSRFLSLLHCMLK 449

Query: 364 ---QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT-------LLAAYADLGR 413
              + D V   +I+ + A   R++  K++ +  I    +L NT       +L AY+  G 
Sbjct: 450 LRIRPDSVTILAIIRLCASLLRVEKVKEIHSYSIRTGSLLSNTAPTVGNAILDAYSKCGN 509

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
              A+++F  +  +    N+++ NS+I G++  G  ++A  +F  M     + +L TW  
Sbjct: 510 MEYANKMFQNLSEK---RNLVTCNSLISGYVGLGSHHDANMIFSGMS----ETDLTTWNL 562

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-- 531
           ++    +N C  +A+    E+   G+KP T TI   L  CT +AS+       GY+IR  
Sbjct: 563 MVRVYAENDCPEQALGLCHELQARGMKPDTVTIMSLLPVCTQMASVHLLSQCQGYIIRSC 622

Query: 532 -HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
             DL L      +L+D YAKCG I +A ++F +S  K+L ++ AMI GYAMHG++ EAL 
Sbjct: 623 FKDLHLEA----ALLDAYAKCGIIGRAYKIFQLSAEKDLVMFTAMIGGYAMHGMSEEALW 678

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           +F ++ + GI PD I FT+IL+ACSHAG V+EGL++F  +   H +KP++E + CVV+LL
Sbjct: 679 IFSHMLKLGIQPDHIIFTSILSACSHAGRVDEGLKIFYSIEKLHGMKPTVEQYACVVDLL 738

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
           +R G + EA  ++ ++P + +A++ G+LL  C   +E EL   ++  L ++E ++ GNY+
Sbjct: 739 ARGGRISEAYSLVTSLPIEANANLWGTLLGACKTHHEVELGRIVANQLFKIEANDIGNYI 798

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            LSN YAA  RW+ V +VR +M+ K L+K  GCSWI++    ++FVA D SHP+   IY+
Sbjct: 799 VLSNLYAADARWDGVMEVRRMMRNKDLKKPAGCSWIEVERTNNIFVAGDCSHPQRSIIYS 858

Query: 771 TLALLGMHVR 780
           TL  L   V+
Sbjct: 859 TLQTLDRQVK 868



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 153/527 (29%), Positives = 259/527 (49%), Gaps = 29/527 (5%)

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQE--DGVSPDNFVLPNVLKACGALGWVGFGR 202
           ++  +W ++I   C      +AL  F    +  +   PD+ VL  +LK+C AL     GR
Sbjct: 4   RDFKTWGSVIWSLCLEAKHSEALSLFHHCLKGHEAFKPDHTVLAAILKSCSALLAPNLGR 63

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV-QN 261
            +HGYV+K G   C      L++MY KCG L E  K+FD +   + V WN ++ G+   N
Sbjct: 64  TLHGYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSN 123

Query: 262 GLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
             + + +RVF  M +     P  V+V ++L   A L  LD GK  H   + +G + D + 
Sbjct: 124 KCDADVMRVFRMMHSSREALPNSVTVATVLPVCARLGDLDAGKCVHGYVIKSGFDQDTLG 183

Query: 321 GSSIINFYSKVGLL-EDAEVVFSRMVERDIVTWNLLIASYVQSG--QSDVVVASSIVDMY 377
           G+++++ Y+K GL+  DA  VF  +  +D+V+WN +IA   ++   +   ++ SS+V   
Sbjct: 184 GNALVSMYAKCGLVSHDAYAVFDNIAYKDVVSWNAMIAGLAENRLVEDAFLLFSSMV--- 240

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
            K     N   V N  IL     ++  +A Y   GR   +    Y +Q   +S ++   N
Sbjct: 241 -KGPTRPNYATVAN--ILPVCASFDKSVAYYC--GRQIHS----YVLQWPELSADVSVCN 291

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM--L 495
           ++I  +L+ GQM EA+ +F  M +     +L+TW   I+G T N    +A+  F  +  L
Sbjct: 292 ALISLYLKVGQMREAEALFWTMDA----RDLVTWNAFIAGYTSNGEWLKALHLFGNLASL 347

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD-LCLPTPIVTSLVDMYAKCGNI 554
           ET + P + T+   L AC  + +L+ G+ IH Y+ RH  L   T +  +LV  YAKCG  
Sbjct: 348 ET-LLPDSVTMVSILPACAQLKNLKVGKQIHAYIFRHPFLFYDTAVGNALVSFYAKCGYT 406

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
            +A   F +   K+L  +N++   +         L+L   + +  I PDS+T   I+  C
Sbjct: 407 EEAYHTFSMISMKDLISWNSIFDAFGEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLC 466

Query: 615 SHAGLVNEGLELF-VGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEA 659
           +    V +  E+    + +   +  +    G  +++  S+CGN++ A
Sbjct: 467 ASLLRVEKVKEIHSYSIRTGSLLSNTAPTVGNAILDAYSKCGNMEYA 513



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 127/275 (46%), Gaps = 19/275 (6%)

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           M+ RD  TW  +I S     +      S  + ++  C +   A +  ++++   +   + 
Sbjct: 1   MLGRDFKTWGSVIWSLCLEAKH-----SEALSLFHHCLKGHEAFKPDHTVLAAILKSCSA 55

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           LLA   +LGR+     L   +  +G     ++   ++  + + G + E   +F Q+    
Sbjct: 56  LLAP--NLGRT-----LHGYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLS--- 105

Query: 464 VQPNLITWTTLISGLT-QNSCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRN 521
              + + W  ++SG +  N C  + +  F+ M  +    P++ T+   L  C  +  L  
Sbjct: 106 -HCDPVVWNIVLSGFSGSNKCDADVMRVFRMMHSSREALPNSVTVATVLPVCARLGDLDA 164

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI-HQAKRVFDISPSKELPVYNAMISGYA 580
           G+ +HGY+I+      T    +LV MYAKCG + H A  VFD    K++  +NAMI+G A
Sbjct: 165 GKCVHGYVIKSGFDQDTLGGNALVSMYAKCGLVSHDAYAVFDNIAYKDVVSWNAMIAGLA 224

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
            + L  +A  LF ++ +    P+  T  NIL  C+
Sbjct: 225 ENRLVEDAFLLFSSMVKGPTRPNYATVANILPVCA 259


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/743 (31%), Positives = 378/743 (50%), Gaps = 85/743 (11%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           R+      ++  Y+    +  A  LF  +   +V SW A++   C+ G+ ++++  FVEM
Sbjct: 123 RDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEM 182

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              GVSPD      +LK+C AL  +  G  VH   +K G +  V   S+L+DMYGKC  L
Sbjct: 183 ARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSL 242

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           ++A   F GM  RN V+W + I G VQN      + +F EM   G+  ++ S  S   + 
Sbjct: 243 DDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSC 302

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A +  L+ G+Q HA A+ N    D V+G++I++ Y+K   L DA   F  +    + T N
Sbjct: 303 AAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSN 362

Query: 354 LLIASYVQS----------------------------------------GQS-------- 365
            ++   V++                                        GQ         
Sbjct: 363 AMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKS 422

Query: 366 ----DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
               D+ V ++++D+Y KC+ +  A  +F  +  +D V WN ++AA    G   +    F
Sbjct: 423 GFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHF 482

Query: 422 YQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK-----------------DMFLQ- 458
            +M   G+ P+  ++ SV+     L  L  G M   K                 DM+ + 
Sbjct: 483 NEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKC 542

Query: 459 ---------MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
                       +G Q  +++W  ++SG + N    EA  FF EML+ G+KP   T    
Sbjct: 543 GIIDEAQKLHDRIGGQ-QVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATV 601

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L  C ++A++  G+ IHG +I+ ++     I ++LVDMYAKCG++  +  VF+    ++ 
Sbjct: 602 LDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDF 661

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +NAMI GYA+HGL VEAL +F+ +Q++ + P+  TF  +L ACSH GL ++G   F  
Sbjct: 662 VSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHL 721

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M + ++++P +EHF C+V++L R     EA++ I +MP   DA I  +LLS C    + E
Sbjct: 722 MTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVE 781

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           +AE  + ++L L+PD+   Y+ LSN YA SG+W +VS+ R ++K+  L+K PGCSWI++ 
Sbjct: 782 IAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQ 841

Query: 750 EELHVFVACDRSHPKTEEIYATL 772
            E+H F+  D++HP++ E+Y  L
Sbjct: 842 SEMHGFLVGDKAHPRSGELYEML 864



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 158/626 (25%), Positives = 269/626 (42%), Gaps = 127/626 (20%)

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV--GFDGC 216
           R  L+E A +   + Q   V+P       V ++C   G          +   V  GF   
Sbjct: 34  RRALAEHARMPAEQQQPPPVAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPT 93

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV-------------------- 256
            FV++ L+ MY +C     AR+VFD M  R+ V+WN+M+                     
Sbjct: 94  AFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPD 153

Query: 257 -----------GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
                      GY Q G+ +E++ +F EM   GV P R +   +L + + L+ L  G Q 
Sbjct: 154 PDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV 213

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ- 364
           HA+AV  G+E+D   GS++++ Y K   L+DA   F  M ER+ V+W   IA  VQ+ Q 
Sbjct: 214 HALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQY 273

Query: 365 ---------------------------------------------------SDVVVASSI 373
                                                              SD VV ++I
Sbjct: 274 VRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAI 333

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           VD+YAK   + +A++ F  +    V   N ++      G   EA  LF  M    I  ++
Sbjct: 334 VDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDV 393

Query: 434 ISWNSVI------LGFLRNGQM----------------NEAKDMFLQMQSL--------G 463
           +S + V        G+ +  Q+                N   D++ + ++L        G
Sbjct: 394 VSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQG 453

Query: 464 V-QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
           + Q + ++W  +I+ L QN   ++ IL F EML  G+KP   T    L AC  + SL  G
Sbjct: 454 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG 513

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
             +H  +I+  L     + +++VDMY KCG I +A+++ D    +++  +NA++SG++++
Sbjct: 514 LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLN 573

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVK 637
             + EA   F  +   G+ PD  TF  +L+ C++   +  G ++        M  D  + 
Sbjct: 574 KESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYIS 633

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVI 663
            ++      V++ ++CG++ ++L V 
Sbjct: 634 STL------VDMYAKCGDMPDSLLVF 653



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 159/642 (24%), Positives = 280/642 (43%), Gaps = 81/642 (12%)

Query: 41  ESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQ 100
           E  + S+   I+   + +Q    ++L  EM+     +    Y    + C     + TG+Q
Sbjct: 254 ERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQ 313

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV-FSWAAIIGLNCR 159
           +HA  +KN   F+ +  V T +V  YAK ++L  A R F  L    V  S A ++GL  R
Sbjct: 314 LHAHAIKNK--FSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL-VR 370

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            GL  +A+  F  M    +  D   L  V  AC        G+ VH   +K GFD  + V
Sbjct: 371 AGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICV 430

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            ++++D+YGKC  L EA  +F GM  ++ V+WN++I    QNG  ++ I  F EM   G+
Sbjct: 431 NNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGM 490

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           +P   +  S+L A A L +L+ G   H   + +G+  D  + S++++ Y K G++++A+ 
Sbjct: 491 KPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQK 550

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQS---------------------------------- 365
           +  R+  + +V+WN +++ +  + +S                                  
Sbjct: 551 LHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLAT 610

Query: 366 ------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                             D  ++S++VDMYAKC  + ++  VF  +  RD V WN ++  
Sbjct: 611 IELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICG 670

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQP 466
           YA  G   EA R+F +MQ E + PN  ++ +V+      G  ++    F L      ++P
Sbjct: 671 YALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEP 730

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEM--LETGIKPSTTTITCALSACTDVASLRNGRA 524
            L  +  ++  L ++    EA+ F   M      +   T    C +    ++A L     
Sbjct: 731 QLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNV 790

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCG---NIHQAKRVFDISPSKELPVYNAMISGYAM 581
           +   L+  D    + +   L ++YA+ G   ++ + +R+      K+ P  + +     M
Sbjct: 791 L---LLDPD---DSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEM 844

Query: 582 HGLAVEALA-------------LFKNLQQKGIDPDSITFTNI 610
           HG  V   A             L   ++  G +PDS +F  +
Sbjct: 845 HGFLVGDKAHPRSGELYEMLNDLIGEMKLSGYEPDSASFVEV 886


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/743 (31%), Positives = 378/743 (50%), Gaps = 85/743 (11%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           R+      ++  Y+    +  A  LF  +   +V SW A++   C+ G+ ++++  FVEM
Sbjct: 81  RDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEM 140

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              GVSPD      +LK+C AL  +  G  VH   +K G +  V   S+L+DMYGKC  L
Sbjct: 141 ARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSL 200

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           ++A   F GM  RN V+W + I G VQN      + +F EM   G+  ++ S  S   + 
Sbjct: 201 DDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSC 260

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A +  L+ G+Q HA A+ N    D V+G++I++ Y+K   L DA   F  +    + T N
Sbjct: 261 AAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSN 320

Query: 354 LLIASYVQS----------------------------------------GQS-------- 365
            ++   V++                                        GQ         
Sbjct: 321 AMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKS 380

Query: 366 ----DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
               D+ V ++++D+Y KC+ +  A  +F  +  +D V WN ++AA    G   +    F
Sbjct: 381 GFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHF 440

Query: 422 YQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK-----------------DMFLQ- 458
            +M   G+ P+  ++ SV+     L  L  G M   K                 DM+ + 
Sbjct: 441 NEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKC 500

Query: 459 ---------MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
                       +G Q  +++W  ++SG + N    EA  FF EML+ G+KP   T    
Sbjct: 501 GIIDEAQKLHDRIGGQ-QVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATV 559

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L  C ++A++  G+ IHG +I+ ++     I ++LVDMYAKCG++  +  VF+    ++ 
Sbjct: 560 LDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDF 619

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +NAMI GYA+HGL VEAL +F+ +Q++ + P+  TF  +L ACSH GL ++G   F  
Sbjct: 620 VSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHL 679

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M + ++++P +EHF C+V++L R     EA++ I +MP   DA I  +LLS C    + E
Sbjct: 680 MTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVE 739

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           +AE  + ++L L+PD+   Y+ LSN YA SG+W +VS+ R ++K+  L+K PGCSWI++ 
Sbjct: 740 IAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQ 799

Query: 750 EELHVFVACDRSHPKTEEIYATL 772
            E+H F+  D++HP++ E+Y  L
Sbjct: 800 SEMHGFLVGDKAHPRSGELYEML 822



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 154/613 (25%), Positives = 263/613 (42%), Gaps = 127/613 (20%)

Query: 172 EMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV--GFDGCVFVASSLIDMYGK 229
           + Q   V+P       V ++C   G          +   V  GF    FV++ L+ MY +
Sbjct: 5   QQQPPPVAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYAR 64

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIV-------------------------------GY 258
           C     AR+VFD M  R+ V+WN+M+                                GY
Sbjct: 65  CAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGY 124

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            Q G+ +E++ +F EM   GV P R +   +L + + L+ L  G Q HA+AV  G+E+D 
Sbjct: 125 CQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDV 184

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------- 364
             GS++++ Y K   L+DA   F  M ER+ V+W   IA  VQ+ Q              
Sbjct: 185 RTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRL 244

Query: 365 --------------------------------------SDVVVASSIVDMYAKCERIDNA 386
                                                 SD VV ++IVD+YAK   + +A
Sbjct: 245 GLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDA 304

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI------ 440
           ++ F  +    V   N ++      G   EA  LF  M    I  +++S + V       
Sbjct: 305 RRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAET 364

Query: 441 LGFLRNGQM----------------NEAKDMFLQMQSL--------GV-QPNLITWTTLI 475
            G+ +  Q+                N   D++ + ++L        G+ Q + ++W  +I
Sbjct: 365 KGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAII 424

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           + L QN   ++ IL F EML  G+KP   T    L AC  + SL  G  +H  +I+  L 
Sbjct: 425 AALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLG 484

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
               + +++VDMY KCG I +A+++ D    +++  +NA++SG++++  + EA   F  +
Sbjct: 485 SDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEM 544

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLL 650
              G+ PD  TF  +L+ C++   +  G ++        M  D  +  ++      V++ 
Sbjct: 545 LDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTL------VDMY 598

Query: 651 SRCGNLDEALRVI 663
           ++CG++ ++L V 
Sbjct: 599 AKCGDMPDSLLVF 611



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 159/642 (24%), Positives = 280/642 (43%), Gaps = 81/642 (12%)

Query: 41  ESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQ 100
           E  + S+   I+   + +Q    ++L  EM+     +    Y    + C     + TG+Q
Sbjct: 212 ERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQ 271

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV-FSWAAIIGLNCR 159
           +HA  +KN   F+ +  V T +V  YAK ++L  A R F  L    V  S A ++GL  R
Sbjct: 272 LHAHAIKNK--FSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL-VR 328

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            GL  +A+  F  M    +  D   L  V  AC        G+ VH   +K GFD  + V
Sbjct: 329 AGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICV 388

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            ++++D+YGKC  L EA  +F GM  ++ V+WN++I    QNG  ++ I  F EM   G+
Sbjct: 389 NNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGM 448

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           +P   +  S+L A A L +L+ G   H   + +G+  D  + S++++ Y K G++++A+ 
Sbjct: 449 KPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQK 508

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQS---------------------------------- 365
           +  R+  + +V+WN +++ +  + +S                                  
Sbjct: 509 LHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLAT 568

Query: 366 ------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                             D  ++S++VDMYAKC  + ++  VF  +  RD V WN ++  
Sbjct: 569 IELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICG 628

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQP 466
           YA  G   EA R+F +MQ E + PN  ++ +V+      G  ++    F L      ++P
Sbjct: 629 YALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEP 688

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEM--LETGIKPSTTTITCALSACTDVASLRNGRA 524
            L  +  ++  L ++    EA+ F   M      +   T    C +    ++A L     
Sbjct: 689 QLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNV 748

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCG---NIHQAKRVFDISPSKELPVYNAMISGYAM 581
           +   L+  D    + +   L ++YA+ G   ++ + +R+      K+ P  + +     M
Sbjct: 749 L---LLDPD---DSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEM 802

Query: 582 HGLAVEALA-------------LFKNLQQKGIDPDSITFTNI 610
           HG  V   A             L   ++  G +PDS +F  +
Sbjct: 803 HGFLVGDKAHPRSGELYEMLNDLIGEMKLSGYEPDSASFVEV 844


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/743 (31%), Positives = 378/743 (50%), Gaps = 85/743 (11%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           R+      ++  Y+    +  A  LF  +   +V SW A++   C+ G+ ++++  FVEM
Sbjct: 81  RDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEM 140

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              GVSPD      +LK+C AL  +  G  VH   +K G +  V   S+L+DMYGKC  L
Sbjct: 141 ARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSL 200

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           ++A   F GM  RN V+W + I G VQN      + +F EM   G+  ++ S  S   + 
Sbjct: 201 DDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSC 260

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A +  L+ G+Q HA A+ N    D V+G++I++ Y+K   L DA   F  +    + T N
Sbjct: 261 AAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSN 320

Query: 354 LLIASYVQS----------------------------------------GQS-------- 365
            ++   V++                                        GQ         
Sbjct: 321 AMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKS 380

Query: 366 ----DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
               D+ V ++++D+Y KC+ +  A  +F  +  +D V WN ++AA    G   +    F
Sbjct: 381 GFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHF 440

Query: 422 YQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK-----------------DMFLQ- 458
            +M   G+ P+  ++ SV+     L  L  G M   K                 DM+ + 
Sbjct: 441 NEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKC 500

Query: 459 ---------MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
                       +G Q  +++W  ++SG + N    EA  FF EML+ G+KP   T    
Sbjct: 501 GIIDEAQKLHDRIGGQ-QVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATV 559

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L  C ++A++  G+ IHG +I+ ++     I ++LVDMYAKCG++  +  VF+    ++ 
Sbjct: 560 LDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDF 619

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +NAMI GYA+HGL VEAL +F+ +Q++ + P+  TF  +L ACSH GL ++G   F  
Sbjct: 620 VSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHL 679

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M + ++++P +EHF C+V++L R     EA++ I +MP   DA I  +LLS C    + E
Sbjct: 680 MTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVE 739

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           +AE  + ++L L+PD+   Y+ LSN YA SG+W +VS+ R ++K+  L+K PGCSWI++ 
Sbjct: 740 IAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQ 799

Query: 750 EELHVFVACDRSHPKTEEIYATL 772
            E+H F+  D++HP++ E+Y  L
Sbjct: 800 SEMHGFLVGDKAHPRSGELYEML 822



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 154/613 (25%), Positives = 263/613 (42%), Gaps = 127/613 (20%)

Query: 172 EMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV--GFDGCVFVASSLIDMYGK 229
           + Q   V+P       V ++C   G          +   V  GF    FV++ L+ MY +
Sbjct: 5   QQQPPPVAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYAR 64

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIV-------------------------------GY 258
           C     AR+VFD M  R+ V+WN+M+                                GY
Sbjct: 65  CAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGY 124

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            Q G+ +E++ +F EM   GV P R +   +L + + L+ L  G Q HA+AV  G+E+D 
Sbjct: 125 CQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDV 184

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------- 364
             GS++++ Y K   L+DA   F  M ER+ V+W   IA  VQ+ Q              
Sbjct: 185 RTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRL 244

Query: 365 --------------------------------------SDVVVASSIVDMYAKCERIDNA 386
                                                 SD VV ++IVD+YAK   + +A
Sbjct: 245 GLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDA 304

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI------ 440
           ++ F  +    V   N ++      G   EA  LF  M    I  +++S + V       
Sbjct: 305 RRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAET 364

Query: 441 LGFLRNGQM----------------NEAKDMFLQMQSL--------GV-QPNLITWTTLI 475
            G+ +  Q+                N   D++ + ++L        G+ Q + ++W  +I
Sbjct: 365 KGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAII 424

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           + L QN   ++ IL F EML  G+KP   T    L AC  + SL  G  +H  +I+  L 
Sbjct: 425 AALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLG 484

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
               + +++VDMY KCG I +A+++ D    +++  +NA++SG++++  + EA   F  +
Sbjct: 485 SDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEM 544

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLL 650
              G+ PD  TF  +L+ C++   +  G ++        M  D  +  ++      V++ 
Sbjct: 545 LDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTL------VDMY 598

Query: 651 SRCGNLDEALRVI 663
           ++CG++ ++L V 
Sbjct: 599 AKCGDMPDSLLVF 611



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 159/642 (24%), Positives = 280/642 (43%), Gaps = 81/642 (12%)

Query: 41  ESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQ 100
           E  + S+   I+   + +Q    ++L  EM+     +    Y    + C     + TG+Q
Sbjct: 212 ERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQ 271

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV-FSWAAIIGLNCR 159
           +HA  +KN   F+ +  V T +V  YAK ++L  A R F  L    V  S A ++GL  R
Sbjct: 272 LHAHAIKNK--FSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL-VR 328

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            GL  +A+  F  M    +  D   L  V  AC        G+ VH   +K GFD  + V
Sbjct: 329 AGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICV 388

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            ++++D+YGKC  L EA  +F GM  ++ V+WN++I    QNG  ++ I  F EM   G+
Sbjct: 389 NNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGM 448

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           +P   +  S+L A A L +L+ G   H   + +G+  D  + S++++ Y K G++++A+ 
Sbjct: 449 KPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQK 508

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQS---------------------------------- 365
           +  R+  + +V+WN +++ +  + +S                                  
Sbjct: 509 LHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLAT 568

Query: 366 ------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                             D  ++S++VDMYAKC  + ++  VF  +  RD V WN ++  
Sbjct: 569 IELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICG 628

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQP 466
           YA  G   EA R+F +MQ E + PN  ++ +V+      G  ++    F L      ++P
Sbjct: 629 YALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEP 688

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEM--LETGIKPSTTTITCALSACTDVASLRNGRA 524
            L  +  ++  L ++    EA+ F   M      +   T    C +    ++A L     
Sbjct: 689 QLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNV 748

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCG---NIHQAKRVFDISPSKELPVYNAMISGYAM 581
           +   L+  D    + +   L ++YA+ G   ++ + +R+      K+ P  + +     M
Sbjct: 749 L---LLDPD---DSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEM 802

Query: 582 HGLAVEALA-------------LFKNLQQKGIDPDSITFTNI 610
           HG  V   A             L   ++  G +PDS +F  +
Sbjct: 803 HGFLVGDKAHPRSGELYEMLNDLIGEMKLSGYEPDSASFVEV 844


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/688 (33%), Positives = 363/688 (52%), Gaps = 91/688 (13%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M+  GV  D+F  P VLKACG +  +  G  +HG ++K G+D  VFVA+SL+ MY KC D
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 233 LEEARKVFDGMIARN-VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
           +  ARK+FD M  RN VV+WNS+I  Y  NG   EA+ +F EM   GV     ++ + L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           A  +      G + HA  + +   LD  + ++++  + + G +  A  +F  + E+D +T
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 352 WNLLIASYVQSG------------------------------------------------ 363
           WN +IA + Q+G                                                
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 364 ----QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
                S++ + ++++DMY+KC  +  A  VF+ +I +D++ W T++AAYA      EA +
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALK 300

Query: 420 LFYQMQLEGISPNIISWNSVILG-------------------------FLRN-------- 446
           L  ++Q +G+  + +   S +L                           ++N        
Sbjct: 301 LLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYAD 360

Query: 447 -GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
            G +N A  MF  ++      ++++WT++IS    N   NEA+  F  M ET ++P + T
Sbjct: 361 CGNINYATRMFESIKC----KDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSIT 416

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           +   LSA   +++L  G+ IHG++ R    L    V SLVDMYA CG++  A +VF  + 
Sbjct: 417 LVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTR 476

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
           SK L ++  MI+ Y MHG    A+ LF  ++ + + PD ITF  +L ACSH+GL+NEG  
Sbjct: 477 SKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKR 536

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
           L   M   +Q++P  EH+ C+V+LL R  +L+EA   + +M  +P A +  + L  C   
Sbjct: 537 LLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIH 596

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
           +  +L E  ++ LL L+PD+PG+YV +SN +AASGRW +V +VR  MK  GL+KNPGCSW
Sbjct: 597 SNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSW 656

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLA 773
           I++G ++H F+  D+SHP++ +IY  LA
Sbjct: 657 IEVGNKVHTFLVRDKSHPESYKIYQKLA 684



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 135/256 (52%), Gaps = 7/256 (2%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           I++ ++     EA+ LL +++ +   +   + G  L  C   R +   +++H   LK G 
Sbjct: 286 IAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGL 345

Query: 110 -DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
            D   +N  ++      YA C  ++ A+R+F  ++ K+V SW ++I      GL+ +AL 
Sbjct: 346 SDLMMQNMIIDV-----YADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALG 400

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F  M+E  V PD+  L ++L A  +L  +  G+ +HG++ + GF       +SL+DMY 
Sbjct: 401 VFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYA 460

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
            CG LE A KVF    ++++V W +MI  Y  +G  + A+ +F  M  + + P  ++  +
Sbjct: 461 CCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLA 520

Query: 289 ILSASANLDALDEGKQ 304
           +L A ++   ++EGK+
Sbjct: 521 LLYACSHSGLINEGKR 536


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/764 (31%), Positives = 394/764 (51%), Gaps = 88/764 (11%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
            ++   LQ C  +R +  GQ++HAR+L++      + ++   L+  Y KC  L  A R+F
Sbjct: 51  RLHAAALQDCAVRRTLRRGQELHARLLRSA--LHPDTFLLDSLLNMYCKCGRLVDARRVF 108

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +  +++ +W A+I  +   G S++AL  F  M ++G++P+ F L +VLKAC       
Sbjct: 109 DGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSK 168

Query: 200 FGRAVHGYVLKV-GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
           F   VHG V+K+ G D   +V SSL++ Y  CG+L+ A  V  G+  R+ V+WN+++ GY
Sbjct: 169 FTHQVHGQVVKLNGLDD-PYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGY 227

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            ++G     + +  ++   G E ++ ++ ++L     L     G+  HA  +  G+E DN
Sbjct: 228 ARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDN 287

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA--------------------- 357
           VL S ++  YS+    E+A  VF R+ E D+V  + +I+                     
Sbjct: 288 VLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGM 347

Query: 358 -----SYVQSGQSDVV--------------------------VASSIVDMYAKCERIDNA 386
                 Y+  G + V                           V  +I++MY K   + +A
Sbjct: 348 GVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDA 407

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI------ 440
              F+ I   D   WNT+L+A+       +  R+F QM  EG S N  ++ SV+      
Sbjct: 408 TVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSL 467

Query: 441 --LGF--------LRNGQMNEAK------DMFLQMQSLGV---------QPNLITWTTLI 475
             L F        L++G  N+        DM+ Q               + +  +WT ++
Sbjct: 468 MNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIM 527

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           SG  +     + + +F+ ML   I+PS  T+  +LS C+D+ASL +G  +H + I+    
Sbjct: 528 SGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWN 587

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
             + +  +LVDMY KCGNI  A+ +F  S +++   +N +I GY+ HG   +AL  FK +
Sbjct: 588 -SSVVSGALVDMYVKCGNIADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQM 646

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
             +G  PD ITF  +L+ACSHAGL+NEG + F  + S + + P+MEH+ C+V++LS+ G 
Sbjct: 647 VDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGR 706

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           L EA  +I  MP  PD+ I  ++L  C      E+AE  +E L +LEP +  + + LSN 
Sbjct: 707 LVEAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAERLFELEPHDASSSILLSNI 766

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           YA  GRW++V++VR+I+ + G++K PGCSWI+I  ++H+F++ D
Sbjct: 767 YADLGRWSDVTRVRNILLDHGVKKEPGCSWIEINGQIHMFLSQD 810



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/544 (23%), Positives = 243/544 (44%), Gaps = 65/544 (11%)

Query: 23  LKLSQTHLTKLRE-SDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEI 81
           L  ++T L  L E SD S+ +L   Y       ++    R  + ++ ++     +I    
Sbjct: 202 LDAAETVLLGLPERSDVSWNALLNGY-------ARHGDYRRVMIIIEKLVASGDEISKYT 254

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
              +L+ C+       GQ +HA ++K G     +  + + LV  Y++C + + A  +F R
Sbjct: 255 LPTVLKCCMELGLAKYGQSVHASVIKRG--LETDNVLNSCLVEMYSRCLSAEEAYEVFIR 312

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +   +V   +A+I    R  ++ +AL  FV+M   GV P++++   +       G     
Sbjct: 313 IDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLC 372

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R+VH Y++K GF     V  ++++MY K G +++A   FD +   +  +WN+++  +   
Sbjct: 373 RSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSG 432

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
              E+ +R+F +M  EG    + +  S+L    +L  L  G Q HA  + +G++ D  + 
Sbjct: 433 SNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVS 492

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY---------------------- 359
             +++ Y++ G    A +VF ++ ERD  +W ++++ Y                      
Sbjct: 493 RMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIR 552

Query: 360 -----------------------------VQSGQSDVVVASSIVDMYAKCERIDNAKQVF 390
                                        ++SG +  VV+ ++VDMY KC  I +A+ +F
Sbjct: 553 PSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNSSVVSGALVDMYVKCGNIADAEMLF 612

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
           +    RD V WNT++  Y+  G   +A   F QM  EG  P+ I++  V+      G +N
Sbjct: 613 HESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLLN 672

Query: 451 EAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           E +  F  + S+ G+ P +  +  ++  L++     EA     +M    + P ++     
Sbjct: 673 EGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQM---PLAPDSSIWRTI 729

Query: 510 LSAC 513
           L AC
Sbjct: 730 LGAC 733



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 181/372 (48%), Gaps = 20/372 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+        + + +  +M C  F      Y  +L+ C    ++  G Q+HA ILK+G 
Sbjct: 426 LSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSG- 484

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +  V   LV  YA+      A  +F +L+ ++ FSW  I+    +   +EK +  F
Sbjct: 485 -LQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYF 543

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M  + + P +  L   L  C  +  +G G  +H + +K G++  V V+ +L+DMY KC
Sbjct: 544 RSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNSSV-VSGALVDMYVKC 602

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G++ +A  +F     R+ VAWN++I GY Q+G   +A+  F +M  EG  P  ++   +L
Sbjct: 603 GNIADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGVL 662

Query: 291 SASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERD 348
           SA ++   L+EG++   +++ I G+       + +++  SK G L +AE + ++M +  D
Sbjct: 663 SACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMPLAPD 722

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
              W  ++ +       ++ +A    +   + E  D +    +SI+L ++         Y
Sbjct: 723 SSIWRTILGAC--RIHRNIEIAERAAERLFELEPHDAS----SSILLSNI---------Y 767

Query: 409 ADLGRSGEASRL 420
           ADLGR  + +R+
Sbjct: 768 ADLGRWSDVTRV 779


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 241/829 (29%), Positives = 403/829 (48%), Gaps = 101/829 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +++ S+    REA++L T M+    +    ++   L  C    ++  G+QIH+ +
Sbjct: 25  SWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSV 84

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           + +G     N  +   LV  Y KC  +  A ++F  + +++V SW A++ +  + G   +
Sbjct: 85  VGSG--LTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQ 142

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL     M  +GV P+      ++  C  L  +  GR +H  ++  G +    + ++L+ 
Sbjct: 143 ALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVH 202

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MYG CG  ++ + VF  M   +V+ W +MI G  QNG  EE + VF +M LEGV+   V+
Sbjct: 203 MYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVT 262

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
             S++    NLDA+ EG+   A  + +      +L +S+I+ Y + G+L+ A+ +   M 
Sbjct: 263 YMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMY 322

Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
           +RD+V WN ++ +  Q+G                                          
Sbjct: 323 QRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGRE 382

Query: 364 -----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                      Q +V V +S++ MY KC + + A  VF ++  +D V WN ++ A     
Sbjct: 383 IHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNS 442

Query: 413 RSGEASRLFYQMQLEGISPNIISW------------------------------------ 436
           +  +A  LF+ M+LEG+  N  +                                     
Sbjct: 443 KFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVG 502

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ--NSCGNEAILFFQEM 494
           NSV+  + R G + +AK  F  ++  G    L+ W+ +++   Q  +  G  A  FFQEM
Sbjct: 503 NSVVNMYARCGSLLDAKKAFDSLEEKG----LVAWSIILAAYAQSKDGPGRRAFKFFQEM 558

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV--TSLVDMYAKCG 552
              GIKP   T   AL AC  +A+L +GR++H         + T +V   ++++MY KCG
Sbjct: 559 EAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGF-VETSLVLGNTIINMYGKCG 617

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           +   AK VFD  P K L  +N++I  YA +G A+EAL+  + +  +G DPDS T  +IL 
Sbjct: 618 SPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILY 677

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP-CDPD 671
             SHAGL+  G+E F     DH ++PS     C+V+LL+R G LD A  +IL  P C  D
Sbjct: 678 GLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQAD 737

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
                +LL+ C    + +     +E + +LEP + G++V L+N YA+ GRW++ S++R +
Sbjct: 738 TIAWMTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKM 797

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           M+   ++K PGCSWI++   +H F++ +  HPK  EI   L  L + +R
Sbjct: 798 MERMSVKKEPGCSWIELSGSVHEFISGESKHPKIREICEDLEKLTLRMR 846



 Score =  272 bits (695), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 189/711 (26%), Positives = 317/711 (44%), Gaps = 98/711 (13%)

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
            Y KC  +  A  +F  +  KNVFSW  ++    + G   +AL  F  MQ +G  PD  V
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
               L AC A G +  GR +H  V+  G    + +++SL++MYGKC D+  A KVFDGM+
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            R+VV+W +M+  Y QNG   +A+     M  EGV+P +V+  +I+   A L  LD G++
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            H   +  G+E D +LG+++++ Y   G  +D + VFSRM +  ++ W  +IA   Q+GQ
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQ 240

Query: 365 ----------------------------------------------------SDVVVASS 372
                                                               S  ++A+S
Sbjct: 241 YEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATS 300

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           ++ +Y +C  +D AK +   +  RDVV WN ++ A A  G + EA  L  +M +EG   N
Sbjct: 301 LISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGAN 360

Query: 433 IISW------------------------------------NSVILGFLRNGQMNEAKDMF 456
            +++                                    NSVI  + + GQ   A  +F
Sbjct: 361 KVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVF 420

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
             M     + + ++W  +I+    NS   +A+  F  M   G++ +  T+   L AC  +
Sbjct: 421 EAMP----RKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGL 476

Query: 517 ASLRNGRAIHGYLIRHDLCL-PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
             L+  R IH            T +  S+V+MYA+CG++  AK+ FD    K L  ++ +
Sbjct: 477 EDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSII 536

Query: 576 ISGYAM--HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           ++ YA    G    A   F+ ++ +GI P  +TF + L+AC+    +  G  +     + 
Sbjct: 537 LAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAAS 596

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
             V+ S+     ++N+  +CG+  +A  V   MP          +++     +  E    
Sbjct: 597 GFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSS 656

Query: 694 ISEHLLQ-LEPDNPGNYVALSNAYAASGRWNE-VSQVRDIMKEKGLRKNPG 742
           + E LLQ  +PD+ G  V++    + +G     V   R  +++ GL  + G
Sbjct: 657 LQEMLLQGFDPDS-GTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSG 706


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/808 (29%), Positives = 394/808 (48%), Gaps = 116/808 (14%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  +LQ C   + +  G+Q+H +++  G  F    YV   L+ FY K   ++ A ++F R
Sbjct: 9   FSHILQKCSNLKALNPGKQVHTQMIVTG--FVPTIYVANCLLQFYCKSSKMNYAFKVFDR 66

Query: 142 LRVKNVFSWAAIIG-----------------------------LNCRV--GLSEKALIGF 170
           +  ++V SW  +I                              L+C +  G++ K++  F
Sbjct: 67  MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           V M+   +  D      +LKAC  +   G G  VH   +++GF+  V   S+L+DMY KC
Sbjct: 127 VRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             L++A +VF  M  RN+V W+++I GYVQN    E +++F +M   G+  ++ +  S+ 
Sbjct: 187 KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            + A L A   G Q H  A+ +    D+++G++ ++ Y+K   + DA  VF+ +      
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQ 306

Query: 351 TWNLLIASYVQSGQS--------------------------------------------- 365
           ++N +I  Y +  Q                                              
Sbjct: 307 SYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLA 366

Query: 366 -------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                  ++ VA++I+DMY KC  +  A  +F  +  RD V WN ++AA+       +  
Sbjct: 367 VKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTL 426

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK----------------------DMF 456
            LF  M    + P+  ++ SV+        +N                         DM+
Sbjct: 427 SLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMY 486

Query: 457 ----LQMQSLGVQPNL-----ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
               + M++  +   L     ++W ++ISG +       A  +F +MLE GI P   T  
Sbjct: 487 GKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYA 546

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
             L  C ++A++  G+ IH  +++  L     I ++LVDMY+KCGN+  ++ +F+ +P +
Sbjct: 547 TVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKR 606

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           +   ++AMI  YA HGL  +A+ LF+ +Q   + P+   F ++L AC+H G V++GL  F
Sbjct: 607 DYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYF 666

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             M S + + P MEH+ C+V+LL R G ++EAL++I +MP + D  I  +LLS C     
Sbjct: 667 QKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGN 726

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
            E+AE     LLQL+P +   YV L+N YA  G W EV+++R IMK   L+K PGCSWI+
Sbjct: 727 VEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIE 786

Query: 748 IGEELHVFVACDRSHPKTEEIYATLALL 775
           + +E+H F+  D++HP++EEIY    LL
Sbjct: 787 VRDEVHTFLVGDKAHPRSEEIYEQTHLL 814



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/533 (24%), Positives = 250/533 (46%), Gaps = 73/533 (13%)

Query: 279 VEPTR-VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           + PT+ ++ + IL   +NL AL+ GKQ H   ++ G      + + ++ FY K   +  A
Sbjct: 1   MNPTKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYA 60

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
             VF RM +RD+++WN LI  Y   G                   +  A+ +F+S+  RD
Sbjct: 61  FKVFDRMPQRDVISWNTLIFGYAGIGN------------------MGFAQSLFDSMPERD 102

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQ--------------------LE---------- 427
           VV WN+LL+ Y   G + ++  +F +M+                    +E          
Sbjct: 103 VVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHC 162

Query: 428 -----GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
                G   ++++ ++++  + +  ++++A  +F +M     + NL+ W+ +I+G  QN 
Sbjct: 163 LAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMP----ERNLVCWSAVIAGYVQND 218

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
              E +  F++ML+ G+  S +T      +C  +++ + G  +HG+ ++ D    + I T
Sbjct: 219 RFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGT 278

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
           + +DMYAKC  +  A +VF+  P+     YNA+I GYA     ++AL +F++LQ+  +  
Sbjct: 279 ATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGF 338

Query: 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN----LLSRCGNLDE 658
           D I+ +  L ACS      EG++L  G+     VK  +    CV N    +  +CG L E
Sbjct: 339 DEISLSGALTACSVIKRHLEGIQLH-GL----AVKCGLGFNICVANTILDMYGKCGALME 393

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNE--TELAEYISEHLLQLEPDNPGNYVALSNAY 716
           A  +   M    DA    ++++   ++ E    L+ ++S     +EPD+   Y ++  A 
Sbjct: 394 ACLIFEEME-RRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDD-FTYGSVVKAC 451

Query: 717 AASGRWNEVSQV--RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEE 767
           A     N  +++  R I    GL    G + + +  +  + +  ++ H + EE
Sbjct: 452 AGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEE 504


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/689 (33%), Positives = 361/689 (52%), Gaps = 29/689 (4%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR---VKNVFSWAAIIGL 156
           Q+H+  ++ G   +R+  V   LV   A+       +RL         K+   W   + +
Sbjct: 73  QLHSLAVRTG--LSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAM 130

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
                  ++A+  F EMQ  GV  D +    VL ACG  G +  GRAVH Y LK+  D  
Sbjct: 131 LAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAH 190

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
             V   L  MY +  D+  A +V D M A +VV WN+++    + GL ++A+ +   M+ 
Sbjct: 191 PLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSR 250

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI-----NGMELDNVLGSSIINFYSKV 331
            G EP   +  ++LS  +       G+   A+ V+      G+  D    SS++   +  
Sbjct: 251 SGPEPNVATWNTVLSGCSR-----HGRDREALGVVASMLKQGLRPDATTVSSLLKSVANT 305

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
           GLL     +    +   +              + DV   +++VDMYAKC R+D A++V +
Sbjct: 306 GLLRHGMEIHCFFLRNQL--------------EPDVYTGTALVDMYAKCGRLDCAQKVLD 351

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
           ++  R++  WN+L+A YA+ GR   A  L   M+   + P+I +WN +I G+  NGQ ++
Sbjct: 352 ALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQ 411

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A  +  Q+++ GV PN+++WT+LISG   N    ++  F  EM + G++PS  T++  L 
Sbjct: 412 AVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLR 471

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           AC  +A  + G+ +H + +R        + T+L+DMY+K G++  AK +F+    K L +
Sbjct: 472 ACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVL 531

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
            NAM++G A+HG   EA+ LF ++   G+ PDSITFT +L AC   GLV EG E F  M 
Sbjct: 532 CNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSME 591

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
           + + VKP+ E++ C+V+LL+RCG LDEA+  I   P DP A   G+LL+ C       LA
Sbjct: 592 TKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALA 651

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           E  + +L  LEP N  NY+ + N Y     ++E   ++  MK +G+   PG SWIQI + 
Sbjct: 652 EVAARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQG 711

Query: 752 LHVFVACDRSHPKTEEIYATLALLGMHVR 780
           +HVF    + HP+T EIY  L  L   ++
Sbjct: 712 IHVFEVDGKPHPETAEIYEELIRLVFQIK 740



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 116/534 (21%), Positives = 210/534 (39%), Gaps = 121/534 (22%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILK-- 107
            ++ L++ ++  EA+ +  EM+ R           +L  C     +  G+ +HA  LK  
Sbjct: 127 HVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLA 186

Query: 108 -----------------NGDFFARNEYVET----------KLVVFYAKC----DALDVAS 136
                            N D  A    ++            +V   A+     DAL++A+
Sbjct: 187 LDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAA 246

Query: 137 RLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
           R+       NV +W  ++    R G   +AL     M + G+ PD   + ++LK+    G
Sbjct: 247 RMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTG 306

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
            +  G  +H + L+   +  V+  ++L+DMY KCG L+ A+KV D +  RN+  WNS++ 
Sbjct: 307 LLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVA 366

Query: 257 GYVQ-----------------------------------NGLNEEAIRVFYEMTLEGVEP 281
           GY                                     NG + +A+ +  ++   GV P
Sbjct: 367 GYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTP 426

Query: 282 TRVSVTSILSAS-----------------------------------ANLDALDEGKQAH 306
             VS TS++S S                                   A L    +GK+ H
Sbjct: 427 NVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELH 486

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
             A+    + D V+ +++I+ YSK G L  A+V+F  + ++++V  N ++      GQ  
Sbjct: 487 CFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGR 546

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                         E I+    ++NS +  D + +  LL A   +G   E    F  M+ 
Sbjct: 547 --------------EAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMET 592

Query: 427 E-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           + G+ P   ++  ++    R G ++EA D    ++   + P    W  L++G +
Sbjct: 593 KYGVKPTTENYACMVDLLARCGYLDEAMDF---IERSPIDPGASHWGALLTGCS 643


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/689 (33%), Positives = 361/689 (52%), Gaps = 29/689 (4%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR---VKNVFSWAAIIGL 156
           Q+H+  ++ G   +R+  V   LV   A+       +RL         K+   W   + +
Sbjct: 73  QLHSLAVRTG--LSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAM 130

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
                  ++A+  F EMQ  GV  D +    VL ACG  G +  GRAVH Y LK+  D  
Sbjct: 131 LAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAH 190

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
             V   L  MY +  D+  A +V D M A +VV WN+++    + GL ++A+ +   M+ 
Sbjct: 191 PLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSR 250

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI-----NGMELDNVLGSSIINFYSKV 331
            G EP   +  ++LS  +       G+   A+ V+      G+  D    SS++   +  
Sbjct: 251 SGPEPNVATWNTVLSGCSR-----HGRDREALGVVASMLKQGLRPDATTVSSLLKSVANT 305

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
           GLL     +    +   +              + DV   +++VDMYAKC R+D A++V +
Sbjct: 306 GLLRHGMEIHCFFLRNQL--------------EPDVYTGTALVDMYAKCGRLDCAQKVLD 351

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
           ++  R++  WN+L+A YA+ GR   A  L   M+   + P+I +WN +I G+  NGQ ++
Sbjct: 352 ALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQ 411

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A  +  Q+++ GV PN+++WT+LISG   N    ++  F  EM + G++PS  T++  L 
Sbjct: 412 AVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLR 471

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           AC  +A  + G+ +H + +R        + T+L+DMY+K G++  AK +F+    K L +
Sbjct: 472 ACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVL 531

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
            NAM++G A+HG   EA+ LF ++   G+ PDSITFT +L AC   GLV EG E F  M 
Sbjct: 532 CNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSME 591

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
           + + VKP+ E++ C+V+LL+RCG LDEA+  I   P DP A   G+LL+ C       LA
Sbjct: 592 TKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALA 651

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           E  + +L  LEP N  NY+ + N Y     ++E   ++  MK +G+   PG SWIQI + 
Sbjct: 652 EVAARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQG 711

Query: 752 LHVFVACDRSHPKTEEIYATLALLGMHVR 780
           +HVF    + HP+T EIY  L  L   ++
Sbjct: 712 IHVFEVDGKPHPETAEIYEELIRLVFQIK 740



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 117/534 (21%), Positives = 211/534 (39%), Gaps = 121/534 (22%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILK-- 107
            ++ L++ ++  EA+ +  EM+ R           +L  C     +  G+ +HA  LK  
Sbjct: 127 HVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLA 186

Query: 108 -----------------NGDFFARNEYVET----------KLVVFYAKC----DALDVAS 136
                            N D  A    ++            +V   A+     DAL++A+
Sbjct: 187 LDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAA 246

Query: 137 RLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
           R+       NV +W  ++    R G   +AL     M + G+ PD   + ++LK+    G
Sbjct: 247 RMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTG 306

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
            +  G  +H + L+   +  V+  ++L+DMY KCG L+ A+KV D +  RN+  WNS++ 
Sbjct: 307 LLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVA 366

Query: 257 GYVQ-----------------------------------NGLNEEAIRVFYEMTLEGVEP 281
           GY                                     NG + +A+ +  ++   GV P
Sbjct: 367 GYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTP 426

Query: 282 TRVSVTSILSAS-----------------------------------ANLDALDEGKQAH 306
             VS TS++S S                                   A L    +GK+ H
Sbjct: 427 NVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELH 486

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
             A+    + D V+ +++I+ YSK G L  A+V+F  + ++++V  N ++      GQ  
Sbjct: 487 CFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGR 546

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                         E I+    ++NS +  D + +  LL A   +G   E    F  M+ 
Sbjct: 547 --------------EAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMET 592

Query: 427 E-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           + G+ P   ++  ++    R G ++EA D F++     + P    W  L++G +
Sbjct: 593 KYGVKPTTENYACMVDLLARCGYLDEAMD-FIERSP--IDPGASHWGALLTGCS 643


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 256/822 (31%), Positives = 433/822 (52%), Gaps = 76/822 (9%)

Query: 3   SFTFTTP---PNPK----FSHTKPQKPLKLSQTHLTK-LRESDNSYESLYKS-------Y 47
           +FTF+ P   P P     FS  K    L+ + T  T+ +  + +   S++ S       +
Sbjct: 6   AFTFSLPSIFPLPSQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEWW 65

Query: 48  FHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARI 105
              + S  +   +REAV  LT +      I P+ Y    LL+     +DM  G+QIHA +
Sbjct: 66  IDLLRSKVRSNLLREAV--LTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K G +   +  V   LV  Y KC       ++F R+  +N  SW ++I   C     E 
Sbjct: 124 YKFG-YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGW---VGFGRAVHGYVLKVGFDGCVFVASS 222
           AL  F  M ++ V P +F L +V+ AC  L     +  G+ VH Y L+ G +   F+ ++
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINT 241

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L+ MYGK G L  ++ +      R++V WN+++    QN    EA+    EM LEGVEP 
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVING-MELDNVLGSSIINFYSKVGLLEDAEVVF 341
             +++S+L A ++L+ L  GK+ HA A+ NG ++ ++ +GS++++ Y     +     VF
Sbjct: 302 EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF 361

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVV---------------ASSIVDMYAKCERID-- 384
             M +R I  WN +IA Y Q+      +               ++++  +   C R    
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 385 NAKQVFNSIIL-----RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
           + K+  +  ++     RD  + NTL+  Y+ LG+   A R+F +M+      ++++WN++
Sbjct: 422 SRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME----DRDLVTWNTM 477

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           I G++ +    +A  +  +MQ+L  +        +  G ++ S                +
Sbjct: 478 ITGYVFSEHHEDALLLLHKMQNLERK--------VSKGASRVS----------------L 513

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           KP++ T+   L +C  +++L  G+ IH Y I+++L     + ++LVDMYAKCG +  +++
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VFD  P K +  +N +I  Y MHG   EA+ L + +  +G+ P+ +TF ++  ACSH+G+
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSL 678
           V+EGL +F  M  D+ V+PS +H+ CVV+LL R G + EA +++  MP D + A    SL
Sbjct: 634 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSL 693

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L      N  E+ E  +++L+QLEP+   +YV L+N Y+++G W++ ++VR  MKE+G+R
Sbjct: 694 LGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVR 753

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           K PGCSWI+ G+E+H FVA D SHP++E++   L  L   +R
Sbjct: 754 KEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMR 795


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 253/789 (32%), Positives = 400/789 (50%), Gaps = 105/789 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I + S+    +EA+     M     +     +  +L+ C    D + G  IH  I     
Sbjct: 99  IRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQDIASRE- 157

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE-----K 165
               + ++ T LV  Y K   LD A ++F ++  K+V SW A+I      GLS+     +
Sbjct: 158 -LECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMIS-----GLSQSSNPCE 211

Query: 166 ALIGFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF--VASS 222
           AL  F  MQ E+GV PD+  + N+  A   L  V   +++HGYV++     CVF  V++S
Sbjct: 212 ALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVR----RCVFGVVSNS 267

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LIDMY KCG+++ A ++FD M  ++ ++W +M+ GYV +G   E +++  EM  + ++  
Sbjct: 268 LIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMN 327

Query: 283 RVSVT-SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
           ++SV  S+L+A+   D L++GK+ H  A+  GM  D V+ + I++ Y+K G L+ A+  F
Sbjct: 328 KISVVNSVLAATETRD-LEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFF 386

Query: 342 SRMVERDIVTWNLLIASYVQSGQ------------------------------------- 364
             +  RD+V W+  +++ VQ+G                                      
Sbjct: 387 LSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSR 446

Query: 365 ---------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                          SD+ VA+++V MY +C+    A  +FN +  +DVV WNTL+  + 
Sbjct: 447 LGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFT 506

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LGF------LRNGQMNEAK 453
             G    A  +F ++QL G+ P+  +  S++          LG       ++NG  +E  
Sbjct: 507 KCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMH 566

Query: 454 ------DMFLQMQSLGVQPNL----------ITWTTLISGLTQNSCGNEAILFFQEMLET 497
                 DM+ +  SL    NL          ++W  +I+G   N C NEAI  F +M   
Sbjct: 567 VKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLE 626

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
            ++P+  T    L A + ++ LR   A H  +IR      T I  SL+DMYAK G +  +
Sbjct: 627 SVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYS 686

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           ++ F    +K    +NAM+SGYAMHG    ALALF  +Q+  +  DS+++ ++L+AC HA
Sbjct: 687 EKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHA 746

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           GL+ EG  +F  M   H ++PSMEH+ C+V+LL   G  DE L +I  MP +PDA + G+
Sbjct: 747 GLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGA 806

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           LL  C   +  +L E    HLL+LEP N  +Y+ LS+ YA  GRW +  + R  M + GL
Sbjct: 807 LLGACKMHSNVKLGEIALHHLLKLEPRNAVHYIVLSDIYAQCGRWIDARRTRSNMTDHGL 866

Query: 738 RKNPGCSWI 746
           +KNPG SW+
Sbjct: 867 KKNPGYSWV 875



 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 178/629 (28%), Positives = 291/629 (46%), Gaps = 121/629 (19%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
            LL+ C Y   +    QIHAR++      A N      L++                   
Sbjct: 57  HLLRSCKYLNPLL---QIHARLIVQQCTLAPNSITNPSLIL------------------- 94

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC-GALGWVGFGR 202
                 W ++I    R+ L ++A+  +  M   G+ PD +    VLKAC GAL +   G 
Sbjct: 95  ------WNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDF-HEGV 147

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
           A+H  +     +  VF+ + L+DMY K G L+ ARKVFD M  ++V +WN+MI G  Q+ 
Sbjct: 148 AIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSS 207

Query: 263 LNEEAIRVFYEMTL-EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
              EA+ +F  M + EGVEP  VS+ ++  A + L+ +D  K  H   V     +  V+ 
Sbjct: 208 NPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRC--VFGVVS 265

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------ 363
           +S+I+ YSK G ++ A  +F +M  +D ++W  ++A YV  G                  
Sbjct: 266 NSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIK 325

Query: 364 ----------------------------------QSDVVVASSIVDMYAKCERIDNAKQV 389
                                              SD+VVA+ IV MYAKC  +  AK+ 
Sbjct: 326 MNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEF 385

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFL 444
           F S+  RD+V+W+  L+A    G  GEA  +F +MQ EG+ P+    +S++     +   
Sbjct: 386 FLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSS 445

Query: 445 RNGQMNEAK-----------------DMFLQMQSLGVQPNL---------ITWTTLISGL 478
           R G+M                      M+ + +S      L         + W TLI+G 
Sbjct: 446 RLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGF 505

Query: 479 TQNSCGNE--AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           T+  CG+   A+  F  +  +G++P + T+   LSAC  +  L  G   HG +I++ +  
Sbjct: 506 TK--CGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIES 563

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPS-KELPVYNAMISGYAMHGLAVEALALFKNL 595
              +  +L+DMYAKCG++  A+ +F ++   K+   +N MI+GY  +G A EA++ F  +
Sbjct: 564 EMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQM 623

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGL 624
           + + + P+ +TF  IL A S+  ++ E +
Sbjct: 624 KLESVRPNLVTFVTILPAVSYLSILREAM 652



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 150/611 (24%), Positives = 267/611 (43%), Gaps = 143/611 (23%)

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           +++ WNS+I  Y +  L +EAI+ +  M+  G+EP + + T +L A        EG   H
Sbjct: 91  SLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIH 150

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-- 364
                  +E D  +G+ +++ Y K+G L++A  VF +M  +D+ +WN +I+   QS    
Sbjct: 151 QDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPC 210

Query: 365 --------------------------------SDV-----------------VVASSIVD 375
                                            DV                 VV++S++D
Sbjct: 211 EALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGVVSNSLID 270

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
           MY+KC  +  A Q+F+ + ++D + W T++A Y   G   E  +L  +M+ + I  N IS
Sbjct: 271 MYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKIS 330

Query: 436 -WNSVI--------------------LG--------------FLRNGQMNEAKDMFLQMQ 460
             NSV+                    LG              + + G++ +AK+ FL ++
Sbjct: 331 VVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLE 390

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
                 +L+ W+  +S L Q     EA+  FQEM   G+KP  T ++  +SAC +++S R
Sbjct: 391 G----RDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSR 446

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            G+ +H Y+I+ D+     + T+LV MY +C +   A  +F+    K++  +N +I+G+ 
Sbjct: 447 LGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFT 506

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACS-----HAGLVNEGLELFVGMFSDHQ 635
             G    AL +F  LQ  G+ PDS T  ++L+AC+     + G+   G  +  G+ S+  
Sbjct: 507 KCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMH 566

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           VK ++      +++ ++CG+L                         C   N   L +++ 
Sbjct: 567 VKVAL------IDMYAKCGSL-------------------------CTAENLFHLNKHVK 595

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN--------PGCSWIQ 747
           + +         ++  +   Y  +G  NE     + MK + +R N        P  S++ 
Sbjct: 596 DEV---------SWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLS 646

Query: 748 IGEELHVFVAC 758
           I  E   F AC
Sbjct: 647 ILREAMAFHAC 657



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 146/629 (23%), Positives = 278/629 (44%), Gaps = 101/629 (16%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKR--DMYTGQQIHA 103
           S+   IS LS+     EA+++   M+     + P+    L       R  D+ + + IH 
Sbjct: 195 SWNAMISGLSQSSNPCEALEIFQRMQMEE-GVEPDSVSILNLAPAVSRLEDVDSCKSIHG 253

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
            +++   F      V   L+  Y+KC  + +A ++F ++ VK+  SWA ++      G  
Sbjct: 254 YVVRRCVFGV----VSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCY 309

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
            + L    EM+   +  +   + N + A      +  G+ VH Y L++G    + VA+ +
Sbjct: 310 FEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPI 369

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           + MY KCG+L++A++ F  +  R++V W++ +   VQ G   EA+ +F EM  EG++P +
Sbjct: 370 VSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDK 429

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
             ++S++SA A + +   GK  H   +   M  D  + +++++ Y++      A  +F+R
Sbjct: 430 TILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNR 489

Query: 344 MVERDIVTWNLLIASYVQSG---------------------------------------- 363
           M  +D+V WN LI  + + G                                        
Sbjct: 490 MHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLG 549

Query: 364 ------------QSDVVVASSIVDMYAKCERIDNAKQVFN-SIILRDVVLWNTLLAAYAD 410
                       +S++ V  +++DMYAKC  +  A+ +F+ +  ++D V WN ++A Y  
Sbjct: 550 ICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLH 609

Query: 411 LGRSGEASRLFYQMQLEGISPNIISW---------------------------------- 436
            G + EA   F QM+LE + PN++++                                  
Sbjct: 610 NGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFISSTLI 669

Query: 437 -NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
            NS+I  + ++GQ++ ++  F +M++ G     I+W  ++SG   +  G  A+  F  M 
Sbjct: 670 GNSLIDMYAKSGQLSYSEKCFHEMENKGT----ISWNAMLSGYAMHGQGEVALALFSLMQ 725

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI-RHDLCLPTPIVTSLVDMYAKCGNI 554
           ET +   + +    LSAC     ++ GR I   +  +H+L         +VD+    G  
Sbjct: 726 ETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLF 785

Query: 555 HQAKRVFDISPSK-ELPVYNAMISGYAMH 582
            +   + D  P++ +  V+ A++    MH
Sbjct: 786 DEVLCLIDKMPTEPDAQVWGALLGACKMH 814



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 122/276 (44%), Gaps = 39/276 (14%)

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
           P+LI W +LI   ++     EAI  +Q M   G++P   T T  L ACT       G AI
Sbjct: 90  PSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAI 149

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           H  +   +L     I T LVDMY K G++  A++VFD  P K++  +NAMISG +     
Sbjct: 150 HQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNP 209

Query: 586 VEALALFKNLQ-QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG 644
            EAL +F+ +Q ++G++PDS++  N+  A S        LE      S H        FG
Sbjct: 210 CEALEIFQRMQMEEGVEPDSVSILNLAPAVSR-------LEDVDSCKSIHGYVVRRCVFG 262

Query: 645 CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
            V N                            SL+    K  E +LA  I +   Q+   
Sbjct: 263 VVSN----------------------------SLIDMYSKCGEVKLAHQIFD---QMWVK 291

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
           +  ++  +   Y   G + EV Q+ D MK K ++ N
Sbjct: 292 DDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMN 327


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 242/816 (29%), Positives = 402/816 (49%), Gaps = 91/816 (11%)

Query: 49   HQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKN 108
             +I +L ++ +  +A++L ++            +  LL+ C    ++Y G+ IHA I+  
Sbjct: 411  EEIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTM 470

Query: 109  GDFFARNEYVETKLVVFYAKCDALDVASRLF-----CRLRVKNVFSWAAIIGLNCRVGLS 163
            G     + Y+ T L+  Y KC  L  A ++F      R    ++  W  +I    + G  
Sbjct: 471  G--LQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHF 528

Query: 164  EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
            E+ L  F  MQE G+ PD + L  VL  C  L W   GR +HGY+++  F+G  ++ ++L
Sbjct: 529  EEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETAL 588

Query: 224  IDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
            I MY  C    EA  +F  +  R N+VAWN MI G+V+NG+ E+++ ++     E  +  
Sbjct: 589  IGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLV 648

Query: 283  RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
              S T   +A ++ + LD G+Q H   +    + D  + +S++  Y+K G +EDA+ VF 
Sbjct: 649  SASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFD 708

Query: 343  RMVERDIVTWNLLIASYVQSG--------------------------------------- 363
            +++++++   N +I++++ +G                                       
Sbjct: 709  QVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDF 768

Query: 364  -------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
                         QS+V + S+++ MY KC   ++A  VF ++  RDVV W +++A +  
Sbjct: 769  GRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQ 828

Query: 411  LGRSGEASRLFYQMQLEGISPNIISWNSVI----------LGFLRNG---QMNEAKDMFL 457
              R  +A  LF  M+ EG+  +     SVI          LG L +G   +     D+F+
Sbjct: 829  NRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFV 888

Query: 458  QMQSLGV------------------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
                + +                    NL+ W ++IS  + N     +I    ++L+ G 
Sbjct: 889  ACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGF 948

Query: 500  KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
               + +IT  L A + VA+L  G+ +H Y IR  +     +  +L+DMY KCG +  A+ 
Sbjct: 949  YLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQL 1008

Query: 560  VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
            +F+  P + L  +N+MI+GY  HG   EA+ LFK +++    PD +TF  ++ +CSH+G+
Sbjct: 1009 IFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGM 1068

Query: 620  VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
            V EGL LF  M  ++ V+P MEH+  VV+LL R G LD+A   I  MP D D  +   LL
Sbjct: 1069 VEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLL 1128

Query: 680  STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
              C      EL E ++++LL++EP    NYV L N Y     W+  + +R  MK +GL+K
Sbjct: 1129 FACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKK 1188

Query: 740  NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            +PGCSWI++   + VF + D S  +  EIY TL+ L
Sbjct: 1189 SPGCSWIEVKNRVDVFFSGDSSSTRRIEIYKTLSSL 1224


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 256/822 (31%), Positives = 433/822 (52%), Gaps = 76/822 (9%)

Query: 3   SFTFTTP---PNPK----FSHTKPQKPLKLSQTHLTK-LRESDNSYESLYKS-------Y 47
           +FTF+ P   P P     FS  K    L+ + T  T+ +  + +   S++ S       +
Sbjct: 6   AFTFSLPSIFPFPSQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEWW 65

Query: 48  FHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARI 105
              + S  +   +REAV  LT +      I P+ Y    LL+     +DM  G+QIHA +
Sbjct: 66  IDLLRSKVRSNLLREAV--LTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K G +   +  V   LV  Y KC       ++F R+  +N  SW ++I   C     E 
Sbjct: 124 YKFG-YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGW---VGFGRAVHGYVLKVGFDGCVFVASS 222
           AL  F  M ++ V P +F L +V+ AC  L     +  G+ VH Y L+ G +   F+ ++
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINT 241

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L+ MYGK G L  ++ +      R++V WN+++    QN    EA+    EM LEGVEP 
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVING-MELDNVLGSSIINFYSKVGLLEDAEVVF 341
             +++S+L A ++L+ L  GK+ HA A+ NG ++ ++ +GS++++ Y     +     VF
Sbjct: 302 EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF 361

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVV---------------ASSIVDMYAKCERID-- 384
             M +R I  WN +IA Y Q+      +               ++++  +   C R    
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 385 NAKQVFNSIIL-----RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
           + K+  +  ++     RD  + NTL+  Y+ LG+   A R+F +M+      ++++WN++
Sbjct: 422 SRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME----DRDLVTWNTM 477

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           I G++ +    +A  +  +MQ+L  +        +  G ++ S                +
Sbjct: 478 ITGYVFSEHHEDALLLLHKMQNLERK--------VSKGASRVS----------------L 513

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           KP++ T+   L +C  +++L  G+ IH Y I+++L     + ++LVDMYAKCG +  +++
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VFD  P K +  +N +I  Y MHG   EA+ L + +  +G+ P+ +TF ++  ACSH+G+
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSL 678
           V+EGL +F  M  D+ V+PS +H+ CVV+LL R G + EA +++  MP D + A    SL
Sbjct: 634 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSL 693

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L      N  E+ E  +++L+QLEP+   +YV L+N Y+++G W++ ++VR  MKE+G+R
Sbjct: 694 LGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVR 753

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           K PGCSWI+ G+E+H FVA D SHP++E++   L  L   +R
Sbjct: 754 KEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMR 795


>gi|297850366|ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338906|gb|EFH69323.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1490

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 232/742 (31%), Positives = 395/742 (53%), Gaps = 25/742 (3%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           Q+  L +   + EA   L  +  +  ++    Y  LL+ C+    ++ G+ +HAR    G
Sbjct: 52  QLDYLCRNGSLLEAEKALDSLFQQGSKVKRSTYLNLLESCIDSGSIHLGRILHARF---G 108

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
            F   + +VETKL+  YAKC  L  A ++F  +R +N+++W+A+IG   R     +    
Sbjct: 109 LFPEPDVFVETKLLSMYAKCGCLVDARKVFDSMRERNLYTWSAMIGAYSRENRWREVSKL 168

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  M E+GV PD+F+ P +L+ C   G V  G+ +H  V+K+G   C+ V++S++ +Y K
Sbjct: 169 FRLMMEEGVLPDDFLFPKILQGCANCGDVETGKLIHSVVIKLGMSSCLRVSNSILAVYAK 228

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG+ + A K F  M  R+VVAWNS+++ Y QNG +EEA+ +  EM  EG+ P  V+   +
Sbjct: 229 CGEWDFATKFFRRMKERDVVAWNSVLLAYCQNGKHEEAVELVEEMEKEGISPGLVTWNIL 288

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           +     L   D            G+  D    +++I+     G+   A  +F +M    +
Sbjct: 289 IGGYNQLGKCDAAMDLMQKMENFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGV 348

Query: 350 VTWNLLIASYVQSGQ---------------------SDVVVASSIVDMYAKCERIDNAKQ 388
           V   + I S V +                        DV+V +S+VDMY+KC ++++A++
Sbjct: 349 VPNAVTIMSAVSACSYLKVINLGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARK 408

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           VF+S+  +DV  WN+++  Y   G  G+A  LF +MQ   + PNII+WN++I G+++NG 
Sbjct: 409 VFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANVRPNIITWNTMISGYIKNGD 468

Query: 449 MNEAKDMFLQMQSLG-VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
             EA D+F +M+  G VQ N  TW  +I+G  QN   ++A+  F++M  +   P++ TI 
Sbjct: 469 EGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDDALEIFRKMQFSRFMPNSVTIL 528

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
             L AC ++   +  R IHG ++R +L     +  +L D YAK G+I  +K +F    +K
Sbjct: 529 SLLPACANLLGTKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIGYSKTIFMGMETK 588

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           ++  +N++I GY +HG    AL LF  ++ +GI P+  T ++I+ A    G V+EG ++F
Sbjct: 589 DIITWNSLIGGYVLHGSYGPALELFNQMKTQGIKPNRGTLSSIILAHGLMGNVDEGKKVF 648

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             + +D+ + P++EH   +V+L  R   L+EAL+ I  M    +  I  S L+ C    +
Sbjct: 649 YSIANDYHIIPALEHCSAMVSLYGRSNRLEEALQFIQEMNIQSETPIWESFLTGCRIHGD 708

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
            ++A + +E+L  LEP+N      +S  YA   +     + +   ++  L+K  G SWI+
Sbjct: 709 IDMAIHAAENLFSLEPENTVTENIVSQIYALGAKLGRSLEGKKPRRDNLLKKPLGQSWIE 768

Query: 748 IGEELHVFVACDRSHPKTEEIY 769
           +   +H F   D+S   T+ +Y
Sbjct: 769 VRNLIHTFTTGDQSKLCTDLLY 790


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 249/791 (31%), Positives = 397/791 (50%), Gaps = 99/791 (12%)

Query: 75  FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV 134
           F +  E  G LLQ    ++D+  G++IH  ++        ++ + T+++  YA C + D 
Sbjct: 80  FLLVREALGLLLQASGKRKDIEMGRKIH-HLVSGSTRLRSDDVLCTRIITMYAMCGSPDD 138

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACG 193
           +   F  LR KN+F W A+I    R  L  + L  F++M  +  + PDNF  P V+KAC 
Sbjct: 139 SRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACA 198

Query: 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
            +  VG G AVHG V+K G    +FV ++L+  YG  G + +A K+FD M  RN+V+WNS
Sbjct: 199 GISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNS 258

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           MI  +  NG +   +            P   +V ++L   A    +  GK  H  AV   
Sbjct: 259 MIRVFSDNGDDGAFM------------PDVATVVTVLPVCAREREIGVGKGVHGWAVKLS 306

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY-------------- 359
           ++ + V+ +++++ YSK G + D++++F     +++V+WN ++  +              
Sbjct: 307 LDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLR 366

Query: 360 -VQSGQSDV---------------------------------------VVASSIVDMYAK 379
            + +G  DV                                       ++A++ V  YAK
Sbjct: 367 QMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAK 426

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
           C  +  A++VF+ I  + +  WN L+  YA       +     QM+  G+ P+  +  S+
Sbjct: 427 CGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSL 486

Query: 440 I-----LGFLRNGQMNEA--------KDMFLQMQSLGV------------------QPNL 468
           +     L  LR G+            +D+F+ +  L +                    +L
Sbjct: 487 LSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSL 546

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           ++W T+I+G  QN     A+  F++M+  GI+P   ++     AC+ + SLR GR  H Y
Sbjct: 547 VSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAY 606

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
            ++H L     I  S++DMYAK G I Q+ +VF+    K    +NAMI GY MHG A EA
Sbjct: 607 ALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEA 666

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           + LF+ +Q+ G +PD +TF  +L AC+H+GL++EGL     M S   +KP+++H+ CV++
Sbjct: 667 IKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVID 726

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           +L R G LD ALRV   M  +PD  I  SLLS C      E+ E ++  L  LEP+ P N
Sbjct: 727 MLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPEN 786

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YV LSN YA  G+W++V QVR  MKE  LRK+ GCSWI++  ++  FV  +R     EEI
Sbjct: 787 YVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEI 846

Query: 769 YATLALLGMHV 779
            +  ++L M +
Sbjct: 847 KSLWSILEMKI 857



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 124/500 (24%), Positives = 231/500 (46%), Gaps = 58/500 (11%)

Query: 175 EDGVSPDNFVLPN-----VLKACGALGWVGFGRAVHGYV---LKVGFDGCVFVASSLIDM 226
           +D  S D F+L       +L+A G    +  GR +H  V    ++  D  +   + +I M
Sbjct: 72  DDESSSDVFLLVREALGLLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVL--CTRIITM 129

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVS 285
           Y  CG  +++R  FD + ++N+  WN++I  Y +N L  E + +F +M +   + P   +
Sbjct: 130 YAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFT 189

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
              ++ A A +  +  G   H + V  G+  D  +G+++++FY   G + DA  +F  M 
Sbjct: 190 FPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMP 249

Query: 346 ERDIVTWNLLIASYVQSGQS-----DVVVASSIVDMYAKCERIDNAKQVFNSIIL----R 396
           ER++V+WN +I  +  +G       DV    +++ + A+   I   K V    +     +
Sbjct: 250 ERNLVSWNSMIRVFSDNGDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDK 309

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           ++V+ N L+  Y+  G   ++  +F   +L   + N++SWN+++ GF   G ++   D+ 
Sbjct: 310 ELVVNNALMDMYSKWGCIIDSQMIF---KLNN-NKNVVSWNTMVGGFSAEGDIHGTFDLL 365

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            QM +                      G+E            +K    TI  A+  C D 
Sbjct: 366 RQMLA----------------------GSE-----------DVKADEVTILNAVPVCFDE 392

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           + L + + +H Y ++ +      +  + V  YAKCG++  A+RVF    SK L  +NA+I
Sbjct: 393 SVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALI 452

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
            GYA       +L     ++  G+ PD+ T  ++L+ACS    +  G E+  G    + +
Sbjct: 453 GGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVH-GFIIRNWL 511

Query: 637 KPSMEHFGCVVNLLSRCGNL 656
           +  +  +  V++L   CG L
Sbjct: 512 ERDLFVYLSVLSLYIHCGEL 531


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/675 (33%), Positives = 364/675 (53%), Gaps = 63/675 (9%)

Query: 100 QIHARILKNGDFFARNE-YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           Q HARILK+G   A+N+ Y+  KL+  Y+  +  + A  +   +    V+S++++I    
Sbjct: 36  QAHARILKSG---AQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALT 92

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +  L  +++  F  M   G+ PD  VLPN+ K C  L     G+ +H      G D   F
Sbjct: 93  KAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAF 152

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V  SL  MY +CG + +ARKVFD M  ++VV  ++++ GY + G  EE +R+  EM   G
Sbjct: 153 VQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSG 212

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME-----LDNVLGSSIINFYSKVGL 333
           +EP  VS   ILS          G    AV +   M       D V  SS++     VG 
Sbjct: 213 IEPNIVSWNGILSGFNR-----SGYHKEAVIMFQKMHHLGFCPDQVTVSSVL---PSVGD 264

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
            E+  +   R +   ++   LL          D  V S+++DMY K   +    ++F+  
Sbjct: 265 SENLNM--GRQIHGYVIKQGLL---------KDKCVISAMLDMYGKSGHVYGIIKLFDEF 313

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
            + +  + N  +   +  G   +A  +F   + + +  N++SW S+I G  +NG+  EA 
Sbjct: 314 EMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEAL 373

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           ++F +MQ  GV+PN +                                   TI   L AC
Sbjct: 374 ELFREMQVAGVKPNRV-----------------------------------TIPSMLPAC 398

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            ++A+L +GR+ HG+ +R  L     + ++L+DMYAKCG I  ++ VF++ P+K L  +N
Sbjct: 399 GNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWN 458

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           ++++GY+MHG A E +++F++L +  + PD I+FT++L+AC   GL +EG + F  M  +
Sbjct: 459 SLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEE 518

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           + +KP +EH+ C+VNLL R G L EA  +I  +P +PD+ + G+LL++C   N  +LAE 
Sbjct: 519 YGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEI 578

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            ++ L  LEP+NPG YV +SN YAA G W EV  +R+ M+  GL+KNPGCSWIQ+  +++
Sbjct: 579 AAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVY 638

Query: 754 VFVACDRSHPKTEEI 768
             +ACD+SHP+ ++I
Sbjct: 639 TLLACDKSHPQIDQI 653



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 143/558 (25%), Positives = 243/558 (43%), Gaps = 107/558 (19%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I +L+K K   +++ + + M          +   L + C        G+QIH   
Sbjct: 83  SFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVA 142

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK-------------------- 145
             +G     + +V+  L   Y +C  +  A ++F R+  K                    
Sbjct: 143 CVSG--LDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEE 200

Query: 146 ---------------NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLK 190
                          N+ SW  I+    R G  ++A+I F +M   G  PD   + +VL 
Sbjct: 201 VVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLP 260

Query: 191 ACGALGWVGFGRAVHGYVLKVGF--DGCVFVASSLIDMYGKCGDLEEARKVFD------- 241
           + G    +  GR +HGYV+K G   D CV   S+++DMYGK G +    K+FD       
Sbjct: 261 SVGDSENLNMGRQIHGYVIKQGLLKDKCVI--SAMLDMYGKSGHVYGIIKLFDEFEMMET 318

Query: 242 -------------GMIAR---------------NVVAWNSMIVGYVQNGLNEEAIRVFYE 273
                        G++ +               NVV+W S+I G  QNG + EA+ +F E
Sbjct: 319 GVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFRE 378

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M + GV+P RV++ S+L A  N+ AL  G+  H  AV   +  D  +GS++I+ Y+K G 
Sbjct: 379 MQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGR 438

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           ++ +++VF+ M  +++V WN L+  Y   G++  V++                  +F S+
Sbjct: 439 IKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMS------------------IFESL 480

Query: 394 ILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQ 448
           +      D + + +LL+A   +G + E  + F  M  E GI P +  ++ ++    R G+
Sbjct: 481 MRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGK 540

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLI-SGLTQNSCGNEAI----LFFQEMLETGIKPST 503
           + EA D+   ++ +  +P+   W  L+ S   QN+     I    LF  E    G     
Sbjct: 541 LQEAYDL---IKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLM 597

Query: 504 TTITCALSACTDVASLRN 521
           + I  A    T+V S+RN
Sbjct: 598 SNIYAAKGMWTEVDSIRN 615



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 121/500 (24%), Positives = 214/500 (42%), Gaps = 108/500 (21%)

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV----------------------- 339
            QAHA  + +G + D  + + +I  YS      DA++                       
Sbjct: 35  TQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKA 94

Query: 340 --------VFSRMVERDIVTWNLLIA---------SYVQSGQS------------DVVVA 370
                   VFSRM    ++    ++          S  ++G+             D  V 
Sbjct: 95  KLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQ 154

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
            S+  MY +C R+ +A++VF+ +  +DVV  + LL  YA  G   E  R+  +M+  GI 
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIE 214

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
           PNI+SWN ++ GF R+G   EA  MF +M  LG  P+ +                     
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQV--------------------- 253

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
                         T++  L +  D  +L  GR IHGY+I+  L     ++++++DMY K
Sbjct: 254 --------------TVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGK 299

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
            G+++   ++FD     E  V NA I+G + +GL  +AL +F   +++ ++ + +++T+I
Sbjct: 300 SGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSI 359

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE----------AL 660
           +  C+  G   E LELF  M    QV     +   + ++L  CGN+            A+
Sbjct: 360 IAGCAQNGKDIEALELFREM----QVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAV 415

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
           RV L      D H+  +L+    K    ++++ +      +   N   + +L N Y+  G
Sbjct: 416 RVHLL----DDVHVGSALIDMYAKCGRIKMSQIVFN---MMPTKNLVCWNSLMNGYSMHG 468

Query: 721 RWNEVSQVRDIMKEKGLRKN 740
           +  EV  + + +    L+ +
Sbjct: 469 KAKEVMSIFESLMRTRLKPD 488


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/678 (33%), Positives = 361/678 (53%), Gaps = 85/678 (12%)

Query: 187  NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
            ++L+ C     +  G+ VH  +   G      + + L+ MY  CG L E R++FD +++ 
Sbjct: 456  SILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSD 515

Query: 247  N-VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
            N V  WN M+  Y + G   E+I +F +M   G+     + + IL   A L  + E K+ 
Sbjct: 516  NKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRI 575

Query: 306  HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
            H      G    N + +S+I  Y K G ++ A  +F  + +RD+V+WN +I+  V +G S
Sbjct: 576  HGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFS 635

Query: 366  ----------------------------------------------------DVVVASSI 373
                                                                +V+  +++
Sbjct: 636  HSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTL 695

Query: 374  VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
            +DMY+KC  +++A Q F  +  + VV W +L+AAY   G   +A RLFY+M+ +G+SP++
Sbjct: 696  LDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDV 755

Query: 434  ISWNSV---------------ILGFLRNGQM-------NEAKDMFLQMQSLGVQ------ 465
             S  SV               +  ++R   M       N   DM+ +  S+         
Sbjct: 756  YSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQ 815

Query: 466  ---PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
                ++++W T+I G ++NS  NEA+  F EM +   +P   T+ C L AC  +A+L  G
Sbjct: 816  IPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIG 874

Query: 523  RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
            R IHG ++R+       +  +L+DMY KCG++  A+ +FD+ P K+L  +  MISG  MH
Sbjct: 875  RGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMH 934

Query: 583  GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
            GL  EA+A F+ ++  GI PD ITFT+IL ACSH+GL+NEG   F  M S+  ++P +EH
Sbjct: 935  GLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEH 994

Query: 643  FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
            + C+V+LL+R GNL +A  +I TMP  PDA I G+LL  C   ++ ELAE ++EH+ +LE
Sbjct: 995  YACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELE 1054

Query: 703  PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
            PDN G YV L+N YA + +W EV ++R+ + ++GL+K+PGCSWI++  +   FV+ D +H
Sbjct: 1055 PDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAH 1114

Query: 763  PKTEEIYATLALLGMHVR 780
            P+ + I++ L  L + ++
Sbjct: 1115 PQAKSIFSLLNNLRIKMK 1132



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/259 (33%), Positives = 143/259 (55%), Gaps = 7/259 (2%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHA 103
           S+   I++  +E    +A+ L  EM+ +   + P++Y    +L  C     +  G+ +H 
Sbjct: 722 SWTSLIAAYVREGLYDDAIRLFYEMESKG--VSPDVYSMTSVLHACACGNSLDKGRDVHN 779

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
            I KN    A    V   L+  YAKC +++ A  +F ++ VK++ SW  +IG   +  L 
Sbjct: 780 YIRKNN--MALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLP 837

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
            +AL  F EMQ++   PD   +  +L ACG+L  +  GR +HG +L+ G+   + VA++L
Sbjct: 838 NEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANAL 896

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           IDMY KCG L  AR +FD +  ++++ W  MI G   +GL  EAI  F +M + G++P  
Sbjct: 897 IDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDE 956

Query: 284 VSVTSILSASANLDALDEG 302
           ++ TSIL A ++   L+EG
Sbjct: 957 ITFTSILYACSHSGLLNEG 975


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/679 (33%), Positives = 365/679 (53%), Gaps = 97/679 (14%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVG--FDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           ++L+ C     +  GR V   +   G   DG + V   L+ MY KCGDL+E R VFD + 
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGV--KLVFMYVKCGDLKEGRMVFDKLS 212

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
              +  WN MI  Y  +G   E+I +F +M   G++P   + +SIL   A +  ++EG+Q
Sbjct: 213 ESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQ 272

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            H +    G    N + +S+I+FY     +  A+ +F  + +RD+++WN +I+ YV++G 
Sbjct: 273 VHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGL 332

Query: 365 SD-----------------------VVVA------------------------------S 371
            D                       V VA                              +
Sbjct: 333 DDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNN 392

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
           +++DMY+KC  +++A +VF  +  + VV W +++  Y   G S  A +LF +M+  G+ P
Sbjct: 393 TLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVP 452

Query: 432 NIISWNSV-----ILGFLRNGQ------------------------------MNEAKDMF 456
           ++ +  S+     I G L++G+                              M +A D+F
Sbjct: 453 DVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVF 512

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
             M+    + ++I+W T+I G T+NS  NEA+  F EM     KP  TT+ C L AC  +
Sbjct: 513 SHMK----KKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASL 567

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           A+L  GR IHGY +R+       +  ++VDMY KCG +  A+ +FD+ P+K+L  +  MI
Sbjct: 568 AALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMI 627

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +GY MHG   EA+  F  ++  GI+PD ++F +IL ACSH+GL++EG ++F  M  + Q+
Sbjct: 628 AGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQI 687

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
           +P++EH+ C+V+LL+R GNL +A + I  MP  PDA I G+LL  C   ++ +LAE ++E
Sbjct: 688 EPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAE 747

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
            + +LEP+N G YV L+N YA + +W EV ++R  + ++GL+KNPGCSWI+I  ++++FV
Sbjct: 748 RIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFV 807

Query: 757 ACDRSHPKTEEIYATLALL 775
           A D S P+ ++I   L  L
Sbjct: 808 AGDCSKPQAKKIELLLKRL 826


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 242/789 (30%), Positives = 402/789 (50%), Gaps = 106/789 (13%)

Query: 57  EKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG-QQIHARILKNGDFFARN 115
           E+ +     L   M  +N +    I+  +L+GC      +   +QIHA+ + +G  F  +
Sbjct: 141 ERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSG--FESS 198

Query: 116 EYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
            ++   L+  Y K   L  A ++F  L+ ++  SW A+I    + G  E+A++ F ++  
Sbjct: 199 TFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI-- 256

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
                       VL AC  + +  FG+ +HG VLK GF    +V ++L+ +Y + G+L  
Sbjct: 257 ------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSS 304

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A ++F  M  R+ V++NS+I G  Q G    A+ +F +M L+  +P  V+V S+LSA A+
Sbjct: 305 AEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACAS 364

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE----------------V 339
           + AL  GKQ H+ A+  GM  D V+  S+++ Y K   ++ A                  
Sbjct: 365 VGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQ 424

Query: 340 VFSRMVERDIV----TWNLLIASYVQSGQSD-----------------VVVASSIVDMYA 378
           +F++M    IV    T+  ++ +    G +D                 V V+S ++DMYA
Sbjct: 425 IFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYA 484

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
           K  ++D+A ++F  +   DVV W  ++A Y    +  EA  LF +MQ +GI  + I + S
Sbjct: 485 KHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFAS 544

Query: 439 VILG-----------------------------------FLRNGQMNEAKDMFLQMQSLG 463
            I                                     + R G++ EA   F Q+ +  
Sbjct: 545 AISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYA-- 602

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
              + ++W +L+SG  Q+    EA+  F +M + G++ ++ T   A+SA  ++A++R G+
Sbjct: 603 --KDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGK 660

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
            IHG + +      T +  +L+ +YAKCG I       DIS       +N+MI+GY+ HG
Sbjct: 661 QIHGMIRKTGYDSETEVSNALITLYAKCGTID------DIS-------WNSMITGYSQHG 707

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
              EAL LF++++Q  + P+ +TF  +L+ACSH GLV+EG+  F  M   H + P  EH+
Sbjct: 708 CGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHY 767

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
            CVV+LL R G L  A R +  MP  PDA +  +LLS C      ++ E+ + HLL+LEP
Sbjct: 768 ACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEP 827

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHP 763
            +   YV +SN YA SG+W+   + R +MK++G++K PG SW+++   +H F A D++HP
Sbjct: 828 KDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHP 887

Query: 764 KTEEIYATL 772
           + + IY  L
Sbjct: 888 RADMIYEYL 896



 Score =  218 bits (556), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 165/662 (24%), Positives = 281/662 (42%), Gaps = 143/662 (21%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+GC+  R  Y G                      KL+ FY     L+ A  +F  + +
Sbjct: 87  LLEGCLNSRSFYDG---------------------LKLIDFYLAFGDLNCAVNVFDEMPI 125

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC-GALGWVGFGRA 203
           +++  W  I        L  +    F  M    V  D  +   VL+ C G      F   
Sbjct: 126 RSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQ 185

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +H   +  GF+   F+ + LID+Y K G L  A+KVF+ + AR+ V+W +MI G  QNG 
Sbjct: 186 IHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGY 245

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
            EEA+ +F ++              +LSA   ++  + GKQ H + +  G   +  + ++
Sbjct: 246 EEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNA 291

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------------- 363
           ++  YS+ G L  AE +F  M +RD V++N LI+   Q G                    
Sbjct: 292 LVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPD 351

Query: 364 --------------------------------QSDVVVASSIVDMYAKCERIDNAKQVFN 391
                                            SD+VV  S++D+Y KC  I  A + F 
Sbjct: 352 CVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF- 410

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LG---- 442
                           Y  L    ++ ++F QMQ+EGI PN  ++ S++     LG    
Sbjct: 411 --------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDL 456

Query: 443 --------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
                                     + ++G+++ A  +F +++    + ++++WT +I+
Sbjct: 457 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK----ENDVVSWTAMIA 512

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           G TQ+    EA+  F+EM + GIK        A+SAC  + +L  GR IH          
Sbjct: 513 GYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSD 572

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              I  +LV +YA+CG + +A   FD   +K+   +N+++SG+A  G   EAL +F  + 
Sbjct: 573 DLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMN 632

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           + G++ +S TF + ++A ++   V  G ++  GM          E    ++ L ++CG +
Sbjct: 633 KAGLEINSFTFGSAVSAAANIANVRIGKQIH-GMIRKTGYDSETEVSNALITLYAKCGTI 691

Query: 657 DE 658
           D+
Sbjct: 692 DD 693



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 120/290 (41%), Gaps = 41/290 (14%)

Query: 32  KLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQ 87
           K+RE+  +++ +Y     S+   +S  ++     EA+++  +M     +I    +G  + 
Sbjct: 589 KVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVS 648

Query: 88  GCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV 147
                 ++  G+QIH  I K G  +     V   L+  YAKC  +D              
Sbjct: 649 AAANIANVRIGKQIHGMIRKTG--YDSETEVSNALITLYAKCGTID-------------D 693

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG------ 201
            SW ++I    + G   +AL  F +M++  V P++     VL AC  +G V  G      
Sbjct: 694 ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRS 753

Query: 202 -RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVG-Y 258
               H  V K     CV      +D+ G+ G L  A++  + M I  + + W +++    
Sbjct: 754 MSEAHNLVPKPEHYACV------VDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACN 807

Query: 259 VQNGLNEEAIRVFYEMTLEGVEP----TRVSVTSILSASANLDALDEGKQ 304
           V   ++   I  F    L  +EP    T V V+++ + S   D  D  +Q
Sbjct: 808 VHKNID---IGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQ 854



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 107/265 (40%), Gaps = 34/265 (12%)

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
           +L  G +N A ++F +M       +L  W  + +              F+ ML   ++  
Sbjct: 107 YLAFGDLNCAVNVFDEMPI----RSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 503 TTTITCALSACT-DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
                  L  C+ +  S R    IH   I       T I   L+D+Y K G +  AK+VF
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALF-----------------KNLQ----QKGI 600
           +   +++   + AMISG + +G   EA+ LF                 K L     ++G 
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGF 282

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
             ++     ++   S +G ++   ++F  M    +V      +  +++ L++ G ++ AL
Sbjct: 283 SSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS-----YNSLISGLAQQGYINRAL 337

Query: 661 RVILTMPCD---PDAHIIGSLLSTC 682
            +   M  D   PD   + SLLS C
Sbjct: 338 ALFKKMNLDCQKPDCVTVASLLSAC 362



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 31/151 (20%)

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
            I +   M + G++ ++ T    L  C +  S  +G                     L+D
Sbjct: 65  GIGYLHLMEQHGVRANSQTFLWLLEGCLNSRSFYDG-------------------LKLID 105

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
            Y   G+++ A  VFD  P + L  +N + + +    L      LF+ +  K ++ D   
Sbjct: 106 FYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERI 165

Query: 607 FTNILNACS------------HAGLVNEGLE 625
           F  +L  CS            HA  +  G E
Sbjct: 166 FAVVLRGCSGNAVSFRFVEQIHAKTITSGFE 196


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 236/768 (30%), Positives = 397/768 (51%), Gaps = 101/768 (13%)

Query: 99  QQIHARILKNG----DFFARNEYVETKLVVFYAKCDALDVASRLFCRLR-VKNVFSWAAI 153
           ++IHA ++  G    DFF+       KL+  Y+   A   +  +F R+   KNV+ W +I
Sbjct: 24  RRIHALVISLGLDGSDFFS------GKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSI 77

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I    + G   KAL  + +++E  VSPD +  P+V+KAC  L     G  V+  +L++GF
Sbjct: 78  IRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGF 137

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           +  ++V ++L+DMY + G L  AR+VFD M  R++V+WNS+I GY  +G  EEA+ +++E
Sbjct: 138 ESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHE 197

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           +    + P   +V+S+L A ANL  + +G+  H   + +G+   +V+ + ++  Y K   
Sbjct: 198 LRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSR 257

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQ----------------SGQSDVVVASSI---- 373
             DA  VF  MV RD VT+N +I  Y++                  + D++  +S+    
Sbjct: 258 PTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQFKPDILTVTSVLCAC 317

Query: 374 -------------------------------VDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                          +D+YAKC  +  A+ VFNS+  +D V WN
Sbjct: 318 GHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWN 377

Query: 403 TLLAAYADLGRSGEASRLFYQMQL-----------------------------------E 427
           ++++ Y   G   EA +LF  M +                                    
Sbjct: 378 SIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKS 437

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
           GI  ++   N++I  + + G++ ++  +F  M +L    + +TW T+IS   +       
Sbjct: 438 GIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTL----DTVTWNTVISACVRFGDFATG 493

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
           +    +M +  + P   T    L  C  +A+ R G+ IH  L+R        I  +L++M
Sbjct: 494 LQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEM 553

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           Y+KCG +  + RVF+    +++  +  MI  Y M+G   +AL  F ++++ GI PDS+ F
Sbjct: 554 YSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVF 613

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
             ++ ACSH+GLV +GL  F  M + +++ P +EH+ CVV+LLSR   + +A   I  MP
Sbjct: 614 IALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMP 673

Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
            +PDA I  S+L  C  S + E AE +S  +++L PD+PG  +  SNAYAA  +W++VS 
Sbjct: 674 IEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSL 733

Query: 728 VRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           +R  +++K ++KNPG SWI+IG+++HVF + D S P++E I+ +L +L
Sbjct: 734 IRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEIL 781



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 113/501 (22%), Positives = 226/501 (45%), Gaps = 115/501 (22%)

Query: 282 TRVS---VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           TRVS   ++  LS+S+NL+ L   ++ HA+ +  G++  +     +I+ YS       + 
Sbjct: 3   TRVSSAFISRALSSSSNLNEL---RRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSL 59

Query: 339 VVFSRMV-ERDIVTWNLLIASYVQSG---------------------------------- 363
            VF R+   +++  WN +I ++ ++G                                  
Sbjct: 60  SVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGL 119

Query: 364 ------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                             +SD+ V +++VDMY++   +  A+QVF+ + +RD+V WN+L+
Sbjct: 120 FDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLI 179

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF---------------------- 443
           + Y+  G   EA  ++++++   I P+  + +SV+  F                      
Sbjct: 180 SGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVN 239

Query: 444 -------------LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
                        L+  +  +A+ +F +M    V  + +T+ T+I G  +     E++  
Sbjct: 240 SVSVVNNGLLAMYLKFSRPTDARRVFDEM----VVRDSVTYNTMICGYLKLEMVEESVKM 295

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           F E L+   KP   T+T  L AC  +  L   + I+ Y++R    L + +   L+D+YAK
Sbjct: 296 FLENLDQ-FKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAK 354

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           CG++  A+ VF+    K+   +N++ISGY   G  +EA+ LFK +       D IT+  +
Sbjct: 355 CGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLML 414

Query: 611 LNACSH-------AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
           ++  +         GL + G++   G++ D  V  ++      +++ ++CG + ++L++ 
Sbjct: 415 ISLSTRLADLKFGKGLHSNGIK--SGIYIDLSVSNAL------IDMYAKCGEVGDSLKIF 466

Query: 664 LTMPCDPDAHIIGSLLSTCVK 684
            +M    D     +++S CV+
Sbjct: 467 NSMGT-LDTVTWNTVISACVR 486


>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
          Length = 807

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/711 (31%), Positives = 389/711 (54%), Gaps = 43/711 (6%)

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL-DVASRLFCRLRVKNVFSWAAIIG 155
            G+ +H+ ++K+G     +      L+  YAKC  +   A   F R+  K+V SW A+I 
Sbjct: 98  AGKSVHSYVIKSG--LESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIA 155

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL---GWVGFGRAVHGYVLK-V 211
                  +E+A   F  M +  + P+   + ++L  C +L       +G+ VH +VL+ +
Sbjct: 156 GFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRM 215

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
                V V +SL+  Y + G +E+A  +F  M +R++V+WN++I GY  NG   +A+ +F
Sbjct: 216 ELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELF 275

Query: 272 YE-MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-GMELDNVLGSSIINFYS 329
            E ++LE ++P  V++ S+L A A++  L   K  H   + + G+  D  +G+++++FY+
Sbjct: 276 SEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYA 335

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASS 372
           K    + A   F  +  +D+++WN ++ ++ +SG                 + D +   +
Sbjct: 336 KCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILT 395

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVV-------LWNTLLAAYADLGRSGEASRLFYQMQ 425
           I+  YA   R+   K+  +  I   ++       L N +L AYA  G    A  +F  + 
Sbjct: 396 IIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLS 455

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
            +    N+++ NS+I G++ +   ++A  +F  M     + +L TW  ++    +N   +
Sbjct: 456 EK---RNVVTCNSMISGYVNSSSHDDAYAIFNTMS----ETDLTTWNLMVRVYAENDFPD 508

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL-PTPIVTSL 544
           +A+  F E+   G+KP   TI   L AC  +AS+   R  HGY+IR   C     +  + 
Sbjct: 509 QALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIR--ACFNDVRLNGAF 566

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           +DMY+KCG++  A ++F  SP K+L ++ AM+ G+AMHG+  EAL +F  + + G+ PD 
Sbjct: 567 IDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDH 626

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
           +  T +L ACSHAGLV+EG ++F  +   H  +P+ME + CVV+LL+R G + +A   + 
Sbjct: 627 VIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVT 686

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
            MP + +A+I G+LL  C   +E EL   +++HL ++E DN GNYV +SN YAA  RW+ 
Sbjct: 687 RMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMSNLYAADARWDG 746

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           V ++R +M+ + L+K  GCSWI++G   +VF+A D SHP+   IY TL+ L
Sbjct: 747 VMEIRRLMRTRELKKPAGCSWIEVGRRKNVFIAGDSSHPQRSIIYRTLSTL 797



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 136/519 (26%), Positives = 242/519 (46%), Gaps = 83/519 (15%)

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE-EAIRV 270
           G+D    +   L+++Y K G L+   K+F  M  R+ V WN ++ G      +E E +R+
Sbjct: 11  GYDS---LCKGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRL 67

Query: 271 FYEMTL-EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329
           F  M +    +P  V++  +L   A L   D GK  H+  + +G+E   + G+++I+ Y+
Sbjct: 68  FRAMHMVNEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYA 126

Query: 330 KVGLL-EDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVAS 371
           K GL+  DA   F+R+  +D+V+WN +IA + ++                  Q +    +
Sbjct: 127 KCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIA 186

Query: 372 SIVDMYAKCERIDNA-----KQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLF 421
           SI+ + A  E  +NA     K+V   ++ R     DV + N+L++ Y  +G+  +A  LF
Sbjct: 187 SILPVCASLE--ENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLF 244

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
             M+    S +++SWN++I G+  NG+  +A ++F +  S                    
Sbjct: 245 RNMK----SRDLVSWNAIIAGYASNGEWLKALELFSEFIS-------------------- 280

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPI 540
                        LET IKP + T+   L AC  V +L+  + IHGY+IRH  L   T +
Sbjct: 281 -------------LET-IKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSV 326

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
             +L+  YAKC     A + F +   K+L  +NA++  +   G     + L   + ++GI
Sbjct: 327 GNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGI 386

Query: 601 DPDSITFTNILN---ACSHAGLVNE--GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
            PDSIT   I+    A S    V E     +  G+       P++ +   +++  ++CGN
Sbjct: 387 RPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQG-DAGPTLGN--GMLDAYAKCGN 443

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
           +  A+ +  ++    +     S++S  V S+  + A  I
Sbjct: 444 MKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAI 482


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 246/821 (29%), Positives = 397/821 (48%), Gaps = 127/821 (15%)

Query: 77  IGPEIYGELLQGCVY--KRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL-- 132
           +    +  L Q C    +  + TGQ  HAR+L +G  F    +V   L+  YA+C     
Sbjct: 15  VATATFSHLYQLCASAGRSALTTGQAAHARMLVSG--FMPTTFVSNCLLQMYARCGGTAH 72

Query: 133 -----------------------------DVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
                                        D A+ LF  +   +V SW  +I   C+ G+ 
Sbjct: 73  AHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMF 132

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
             ++   +EM   GV+ D   L  +LK+CG L  +  G  +H   +K G +  V   S+L
Sbjct: 133 RNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSAL 192

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           +DMYGKC  L++A + F GM  RN V+W + I G VQN      + +F +M   G+  ++
Sbjct: 193 VDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQ 252

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            +  S   + A +  L   +Q HA A+ N    D V+G++I++ Y+K G L DA   F  
Sbjct: 253 PAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIG 312

Query: 344 MVERDIVTWNLL-----------------------------------------IASYVQS 362
           +   ++ T N +                                         +  Y Q 
Sbjct: 313 LPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQG 372

Query: 363 GQS-----------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
            Q            DV V ++I+D+Y KC+ +  A  VF  +  RD V WN ++AA    
Sbjct: 373 LQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQN 432

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVI-----------------------LG------ 442
               +      +M   G+ P+  ++ SV+                       LG      
Sbjct: 433 ECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVS 492

Query: 443 ------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
                 + + G + EA+ +      +G Q  L++W ++ISG +      EA  FF EML+
Sbjct: 493 STVVDMYCKCGAITEAQKLH---DRIGGQ-ELVSWNSIISGFSLTKQSEEAQRFFSEMLD 548

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
            G+KP   T    L  C ++A++  G+ IHG +I+ ++     I ++LVDMYAKCGN+  
Sbjct: 549 MGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPD 608

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           +  +F+ +   +   +NAMI GYA+HG  +EAL +F+ +Q+  + P+  TF  +L ACSH
Sbjct: 609 SLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSH 668

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            GL+++G + F  M S +++ P +EHF C+V++L R     EAL  I +MP + DA +  
Sbjct: 669 VGLLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWK 728

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +LLS C    + E+AE  + ++L+L+PD+   Y+ LSN YA SG+W +VS+ R +M++  
Sbjct: 729 TLLSICKIRQDVEVAETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGR 788

Query: 737 LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL-ALLG 776
           LRK PGCSWI++  E+H F+  D+ HP+++E+Y  L +L+G
Sbjct: 789 LRKEPGCSWIEVQSEMHGFLVGDKVHPRSKEVYEMLNSLIG 829


>gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Vitis vinifera]
          Length = 868

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/711 (31%), Positives = 389/711 (54%), Gaps = 43/711 (6%)

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL-DVASRLFCRLRVKNVFSWAAIIG 155
            G+ +H+ ++K+G     +      L+  YAKC  +   A   F R+  K+V SW A+I 
Sbjct: 159 AGKSVHSYVIKSG--LESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIA 216

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL---GWVGFGRAVHGYVLK-V 211
                  +E+A   F  M +  + P+   + ++L  C +L       +G+ VH +VL+ +
Sbjct: 217 GFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRM 276

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
                V V +SL+  Y + G +E+A  +F  M +R++V+WN++I GY  NG   +A+ +F
Sbjct: 277 ELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELF 336

Query: 272 YE-MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-GMELDNVLGSSIINFYS 329
            E ++LE ++P  V++ S+L A A++  L   K  H   + + G+  D  +G+++++FY+
Sbjct: 337 SEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYA 396

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASS 372
           K    + A   F  +  +D+++WN ++ ++ +SG                 + D +   +
Sbjct: 397 KCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILT 456

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVV-------LWNTLLAAYADLGRSGEASRLFYQMQ 425
           I+  YA   R+   K+  +  I   ++       L N +L AYA  G    A  +F  + 
Sbjct: 457 IIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLS 516

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
            +    N+++ NS+I G++ +   ++A  +F  M     + +L TW  ++    +N   +
Sbjct: 517 EK---RNVVTCNSMISGYVNSSSHDDAYAIFNTMS----ETDLTTWNLMVRVYAENDFPD 569

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL-PTPIVTSL 544
           +A+  F E+   G+KP   TI   L AC  +AS+   R  HGY+IR   C     +  + 
Sbjct: 570 QALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIR--ACFNDVRLNGAF 627

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           +DMY+KCG++  A ++F  SP K+L ++ AM+ G+AMHG+  EAL +F  + + G+ PD 
Sbjct: 628 IDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDH 687

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
           +  T +L ACSHAGLV+EG ++F  +   H  +P+ME + CVV+LL+R G + +A   + 
Sbjct: 688 VIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVT 747

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
            MP + +A+I G+LL  C   +E EL   +++HL ++E DN GNYV +SN YAA  RW+ 
Sbjct: 748 RMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMSNLYAADARWDG 807

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           V ++R +M+ + L+K  GCSWI++G   +VF+A D SHP+   IY TL+ L
Sbjct: 808 VMEIRRLMRTRELKKPAGCSWIEVGRRKNVFIAGDSSHPQRSIIYRTLSTL 858



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 150/554 (27%), Positives = 263/554 (47%), Gaps = 80/554 (14%)

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G  P+  +L  +LK+C A+  + FG  +HGY LK+G   C  +   L+++Y K G L+  
Sbjct: 34  GYKPNGQILAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSLCKGLLNLYAKSGALDYC 93

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNE-EAIRVFYEMTL-EGVEPTRVSVTSILSASA 294
            K+F  M  R+ V WN ++ G      +E E +R+F  M +    +P  V++  +L   A
Sbjct: 94  NKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCA 153

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL-EDAEVVFSRMVERDIVTWN 353
            L   D GK  H+  + +G+E   + G+++I+ Y+K GL+  DA   F+R+  +D+V+WN
Sbjct: 154 RLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWN 212

Query: 354 LLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNA-----KQVFN 391
            +IA + ++                  Q +    +SI+ + A  E  +NA     K+V  
Sbjct: 213 AVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLE--ENAGYRYGKEVHC 270

Query: 392 SIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
            ++ R     DV + N+L++ Y  +G+  +A  LF  M+    S +++SWN++I G+  N
Sbjct: 271 HVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMK----SRDLVSWNAIIAGYASN 326

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G+  +A ++F +  S                                 LET IKP + T+
Sbjct: 327 GEWLKALELFSEFIS---------------------------------LET-IKPDSVTL 352

Query: 507 TCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
              L AC  V +L+  + IHGY+IRH  L   T +  +L+  YAKC     A + F +  
Sbjct: 353 VSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMIS 412

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN---ACSHAGLVNE 622
            K+L  +NA++  +   G     + L   + ++GI PDSIT   I+    A S    V E
Sbjct: 413 RKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKE 472

Query: 623 --GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
                +  G+       P++ +   +++  ++CGN+  A+ +  ++    +     S++S
Sbjct: 473 THSYSIRFGLLQG-DAGPTLGN--GMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMIS 529

Query: 681 TCVKSNETELAEYI 694
             V S+  + A  I
Sbjct: 530 GYVNSSSHDDAYAI 543


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 246/753 (32%), Positives = 401/753 (53%), Gaps = 57/753 (7%)

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           QI+EA D +T+  C N         E L+ C   + +   +Q+H +I KNG    +    
Sbjct: 15  QIKEA-DPMTKDSCLN---------ESLRCC---KTLNQLKQLHCQITKNG--LDQIPST 59

Query: 119 ETKLV---VFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV------GLSEKALIG 169
            TKLV      A  ++LD A + F  L  ++V S  A+  LN  +      GL  +A++ 
Sbjct: 60  LTKLVNAGAEIASPESLDYARKAF-ELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILL 118

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           +V M   GV+P+++  P VL  C  +     G  VHG V+K+G +  VF+ + LI  Y +
Sbjct: 119 YVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAE 178

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG ++   KVF+GM  RNVV+W S+I GY +    +EA+ +F+EM   G+ P+ V++  +
Sbjct: 179 CGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCV 238

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           +SA A L  LD G++  A     G++L+ V+ +++++ Y K G ++ A+ +F   V+R++
Sbjct: 239 ISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNL 298

Query: 350 VTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNS 392
           V +N ++++Y + G                 + D V   S +   A+   +   K     
Sbjct: 299 VLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGY 358

Query: 393 IILRDVVLW----NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           +I   +  W    N ++  Y   G+   A R+F  M     +  ++SWNS+  GF+RNG 
Sbjct: 359 VIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMS----NKTVVSWNSLTAGFIRNGD 414

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           +  A ++F Q+     + N + W T+ISGL Q S   +AI  F+EM   GIK    T+  
Sbjct: 415 VESAWEVFNQIP----ERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMG 470

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
             SAC  + +    + +H Y+ ++ +     + T+LVDM+A+CG+   A +VF+    ++
Sbjct: 471 IASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERD 530

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           +  + A I   AM G    A  LF  +  +G+ PD + F  +L ACSH G V +GL +F 
Sbjct: 531 VSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIF- 589

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
            +  DH + P +EH+GC+V+LL R G L EA  +I +MP +P+  + GSLL+ C      
Sbjct: 590 SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNV 649

Query: 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           E+A Y +E + +L P   G +V LSN YA++G+W +V++VR  ++EKG+RK PG S +Q+
Sbjct: 650 EMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQV 709

Query: 749 GEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
              +H F + D SHP+   I   L L  M+ R 
Sbjct: 710 NGVIHEFTSGDESHPEMTHI--ALMLQEMNCRF 740


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 230/715 (32%), Positives = 381/715 (53%), Gaps = 100/715 (13%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNF-VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
           G  + A+  +++M +DGV  + F   P ++KA G L  V  GR +HG+VLK+G    V V
Sbjct: 87  GFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSV 146

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-G 278
            +SL+ MY KCG +E+A ++F+ M   ++V+WN+MI G+ ++     ++  F  M  E G
Sbjct: 147 VNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFG 206

Query: 279 VEPTRVS-VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           + P RV+ V+SILS S+ L +L  G++ H V V +G++++  L SS+I  Y K G +++A
Sbjct: 207 IYPNRVACVSSILSCSS-LQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNA 265

Query: 338 EVVFSRMVERD-----IVTWNLLIASYVQSG----------------------------- 363
           E +F+ ++++D      V WN++I+ YV +G                             
Sbjct: 266 ENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFS 325

Query: 364 -----------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
                                  ++++ V ++++DMY KC  +    ++F      ++++
Sbjct: 326 LCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIM 385

Query: 401 WNTLLAAYADLGRSGEASRLFYQ-----------------------------MQLEGISP 431
           W+ +++  A  G   +A  LFY+                             MQ+ G++ 
Sbjct: 386 WSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLAT 445

Query: 432 NIISWNSVILG------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
            +   + V +G      + +   M  +K +FL++     Q +L++W  LISG  Q+ C +
Sbjct: 446 KMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLS----QKDLVSWNALISGYAQDECAD 501

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
           EA+  F++M    I+P+T TI C LS C  ++ +   + +HGYLIR  L     +  SL+
Sbjct: 502 EALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLI 561

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
             YAKCG+I+ +   F+  P +    +N++I G  MH    E + LF  +   GI PD +
Sbjct: 562 ATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHV 621

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           TFT IL+ACSHAG V+EG + F  M  D  +KP +E + C+V+LL R G+L++A  +I+ 
Sbjct: 622 TFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMA 681

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MPC PD  I GSLL +C    +  LAE ++ H+ +L P + G  V L+N Y   G+  E 
Sbjct: 682 MPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLGKGREG 741

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           S+VR  +K+ GL+K PGCSWI++    H+F+A DRSH +++EIYA +  L   ++
Sbjct: 742 SKVRSEIKDMGLKKKPGCSWIEVDNNFHIFIAGDRSHSQSDEIYAAVESLTTEIK 796



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIK-PSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           +I   T++   ++AI  + +ML+ G+K        C + A   +  +  GR IHG++++ 
Sbjct: 79  VIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKL 138

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
            +     +V SL+ MY KCG +  A ++F+  P  +L  +N MISG+        +L  F
Sbjct: 139 GVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFF 198

Query: 593 KNL-QQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           +++  + GI P+ +   + + +CS    +  G E+
Sbjct: 199 RSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREI 233


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/680 (33%), Positives = 363/680 (53%), Gaps = 92/680 (13%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D   L +VL+ C     +  G+ V  ++   GF     + S L  MY  CGDL+EA +VF
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D +     + WN ++    ++G    +I +F +M   GVE    + + +  + ++L ++ 
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G+Q H   + +G    N +G+S++ FY K   ++ A  VF  M ERD+++WN +I  YV
Sbjct: 213 GGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 361 Q------------------------------SGQSDVVVAS------------------- 371
                                          +G +D  + S                   
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332

Query: 372 ---SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
              +++DMY+KC  +D+AK VF  +  R VV + +++A YA  G +GEA +LF +M+ EG
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 429 ISPNIISWNSVI-----------------------LGF------------LRNGQMNEAK 453
           ISP++ +  +V+                       LGF             + G M EA+
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSA 512
            +F +M+      ++I+W T+I G ++N   NEA+  F  +LE     P   T+ C L A
Sbjct: 453 LVFSEMRV----KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 508

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C  +++   GR IHGY++R+       +  SLVDMYAKCG +  A  +FD   SK+L  +
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSW 568

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
             MI+GY MHG   EA+ALF  ++Q GI+ D I+F ++L ACSH+GLV+EG   F  M  
Sbjct: 569 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRH 628

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
           + +++P++EH+ C+V++L+R G+L +A R I  MP  PDA I G+LL  C   ++ +LAE
Sbjct: 629 ECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAE 688

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
            ++E + +LEP+N G YV ++N YA + +W +V ++R  + ++GLRKNPGCSWI+I   +
Sbjct: 689 KVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 748

Query: 753 HVFVACDRSHPKTEEIYATL 772
           ++FVA D S+P+TE I A L
Sbjct: 749 NIFVAGDSSNPETENIEAFL 768


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 251/812 (30%), Positives = 409/812 (50%), Gaps = 112/812 (13%)

Query: 78  GPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASR 137
            P  YG LLQ C   R +  GQ++HA IL        + ++ + L+V +AKC  L  A  
Sbjct: 42  APSTYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEA 101

Query: 138 LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW 197
           L  R    +V+S  A+I      G  +KA+  F  M+   V P+   L  ++ AC  LG 
Sbjct: 102 LADRF--ASVYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIALVNACSCLGN 156

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM---IARNVVAWNSM 254
           +  GR +H  +    F+    + ++LI MY KCG L +A++ FD +     R+VV WN+M
Sbjct: 157 LAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAM 216

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGV-EPTRVSVTSILSA--SANLDALDEGKQAHAVAVI 311
           I  +++NG   EA+++F +M  +G   P  V+  S+L +   A L +L++ +  H   V 
Sbjct: 217 ISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVG 276

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD----IVTWNLLIASYVQSG---- 363
            G+E +  + +++++ Y K+G L+DA  VF R  + +    +VT + +I++  Q+G    
Sbjct: 277 AGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQE 336

Query: 364 -----------------------------------------QSDVVVAS--------SIV 374
                                                    Q+  VV++        +++
Sbjct: 337 SLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLL 396

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
             YA+   +  A+  F++I   DVV WN + AAY    RS EA  LF +M LEG+ P++ 
Sbjct: 397 TTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVA 456

Query: 435 SW--------------------------------------NSVILGFLRNGQMNEAKDMF 456
           ++                                      N+ +  + + G + +A+ +F
Sbjct: 457 TFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVF 516

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTD 515
            ++     + + ITW ++++    +  G EA   FQ M  E  +KP+  T    L A T 
Sbjct: 517 ERISP--ARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTS 574

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV--YN 573
             S+  GR IH  ++ +     T I  +L++MYAKCG++  A+ +FD S S +  V  + 
Sbjct: 575 RTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWT 634

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           ++I+GYA +G A  AL LF  +QQ+G+ P+ +TF + L AC+H G + +G EL  GM  D
Sbjct: 635 SLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPD 694

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           H + P+ +HF C+V+LL RCG LDEA + +L      D     +LL  C  S E E  E 
Sbjct: 695 HGILPASKHFSCIVDLLGRCGRLDEAEK-LLERTSQADVITWMALLDACKNSKELERGER 753

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            +E ++QL+P+   +Y+ L++ YAA+GRWNE + +R  M +KG+R +PGCS +++ +ELH
Sbjct: 754 CAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELH 813

Query: 754 VFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
            F A D+SHPK+EEIY  L  L   ++    V
Sbjct: 814 SFSAGDKSHPKSEEIYLELERLHWSIKAAGYV 845


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/740 (31%), Positives = 382/740 (51%), Gaps = 28/740 (3%)

Query: 34  RESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKR 93
           R  D  Y   + S+   IS LSK +   EA+ L  +M        P  +  +L  C    
Sbjct: 226 RVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 285

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
            +  G+Q+H  +LK G  F+ + YV   LV  Y    +L  A  +F  +  ++  ++  +
Sbjct: 286 SLEIGEQLHGLVLKLG--FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTL 343

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I    + G  EKA+  F  MQ DG+ PD+  L +++ AC + G +  G+ +H Y  K+GF
Sbjct: 344 INGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGF 403

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE---AIRV 270
                +  +L+++Y KC D+E A   F      NVV WN M+V Y   GL ++   + R+
Sbjct: 404 ASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAY---GLLDDLRNSFRI 460

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK 330
           F +M +E + P + +  SIL     L  L+ G+Q H+  +    +L+  + S +I+ Y+K
Sbjct: 461 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAK 520

Query: 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVF 390
           +G L+ A  +  R   +D+V+W  +IA Y Q    D  + +               +Q+ 
Sbjct: 521 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTT--------------FRQML 566

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
           +  I  D V     ++A A L    E  ++  Q  + G S ++   N+++  + + G + 
Sbjct: 567 DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIE 626

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
           EA   F Q ++     + I W  L+SG  Q+    EA+  F  M   GI  +  T   A+
Sbjct: 627 EAYLAFEQTEA----GDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAV 682

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKEL 569
            A ++ A+++ G+ +H  + +      T +  +++ MYAKCG+I  AK+ F ++S   E+
Sbjct: 683 KAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEV 742

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +NAMI+ Y+ HG   EAL  F  +    + P+ +T   +L+ACSH GLV++G+E F  
Sbjct: 743 S-WNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFES 801

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M +++ + P  EH+ CVV++L+R G L  A   IL MP +PDA +  +LLS CV     E
Sbjct: 802 MNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNME 861

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           + E+ + HLL+LEP++   YV LSN YA   +W+     R  MKEKG++K PG SWI++ 
Sbjct: 862 IGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVK 921

Query: 750 EELHVFVACDRSHPKTEEIY 769
             +H F   D++HP  +EI+
Sbjct: 922 NSIHSFYVGDQNHPLADEIH 941



 Score =  269 bits (688), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 182/668 (27%), Positives = 322/668 (48%), Gaps = 90/668 (13%)

Query: 85  LLQGCVYKR-DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
           LL+GC+     +  G+++H++ILK G  F  N  +  KL+ FY     LD A ++F  + 
Sbjct: 73  LLEGCLKTNGSLDEGRKLHSQILKLG--FDNNACLSEKLLDFYLFKGDLDGALKVFDEMP 130

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-- 201
            + +F+W  +I       LS K    F  M  + V+P+      VL+AC   G V F   
Sbjct: 131 ERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRG-GSVAFDVV 189

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             +H  ++  G      V + LID+Y + G ++ AR+VFDG+  ++  +W +MI G  +N
Sbjct: 190 EQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKN 249

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
               EAIR+F +M + G+ PT  + +S+LSA   +++L+ G+Q H + +  G   D  + 
Sbjct: 250 ECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVC 309

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD--------------- 366
           +++++ Y  +G L  AE +FS M +RD VT+N LI    Q G  +               
Sbjct: 310 NALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLE 369

Query: 367 --------VVVASS-----------------------------IVDMYAKCERIDNAKQV 389
                   +VVA S                             ++++YAKC  I+ A   
Sbjct: 370 PDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNY 429

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F    + +VVLWN +L AY  L     + R+F QMQ+E I PN  ++ S++   +R G +
Sbjct: 430 FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 489

Query: 450 NEAK----------------------DMFLQMQSLGVQ---------PNLITWTTLISGL 478
              +                      DM+ ++  L             ++++WTT+I+G 
Sbjct: 490 ELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 549

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
           TQ +  ++A+  F++ML+ GI+     +T A+SAC  + +L+ G+ IH            
Sbjct: 550 TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 609

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
           P   +LV +Y+KCGNI +A   F+ + + +   +NA++SG+   G   EAL +F  + ++
Sbjct: 610 PFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNRE 669

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           GID ++ TF + + A S    + +G ++   + +        E    ++++ ++CG++ +
Sbjct: 670 GIDSNNFTFGSAVKAASETANMKQGKQVH-AVITKTGYDSETEVCNAIISMYAKCGSISD 728

Query: 659 ALRVILTM 666
           A +  L +
Sbjct: 729 AKKQFLEL 736



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/582 (23%), Positives = 239/582 (41%), Gaps = 98/582 (16%)

Query: 169 GFVEMQEDGVSPDNFVLPNVLKAC-GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
           G   ++  G+ P++  L  +L+ C    G +  GR +H  +LK+GFD    ++  L+D Y
Sbjct: 54  GIDSVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFY 113

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
              GDL+ A KVFD M  R +  WN MI       L+ +   +F  M  E V P   + +
Sbjct: 114 LFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFS 173

Query: 288 SILSASANLD-ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE 346
            +L A      A D  +Q HA  +  G+    ++ + +I+ YS+ G ++ A  VF  +  
Sbjct: 174 GVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYL 233

Query: 347 RDIVTWNLLIASYVQSGQSDVVVASSIVDMY---------------AKCERID------- 384
           +D  +W  +I+  +   + +V       DMY               + C++I+       
Sbjct: 234 KDHSSWVAMISG-LSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ 292

Query: 385 -------------------------------NAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                                          +A+ +F+++  RD V +NTL+   +  G 
Sbjct: 293 LHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGY 352

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP------- 466
             +A  LF +MQL+G+ P+  +  S+++    +G +   + +      LG          
Sbjct: 353 GEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGA 412

Query: 467 ------------------------NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
                                   N++ W  ++           +   F++M    I P+
Sbjct: 413 LLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 472

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
             T    L  C  +  L  G  IH  +I+    L   + + L+DMYAK G +  A  +  
Sbjct: 473 QYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILI 532

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               K++  +  MI+GY  +    +AL  F+ +  +GI  D +  TN ++AC+    + E
Sbjct: 533 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 592

Query: 623 GLELFV-----GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           G ++       G  SD   + ++      V L S+CGN++EA
Sbjct: 593 GQQIHAQACVSGFSSDLPFQNAL------VTLYSKCGNIEEA 628


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/708 (31%), Positives = 383/708 (54%), Gaps = 93/708 (13%)

Query: 161 GLSEKALIGFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
           G SE+AL+ FV++Q + G  P+ FVL +V++AC  LG V  G  +HG+V++ GFD  V+V
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            +SLID Y K GB+E AR VFD ++ +  V W ++I GY + G +  ++ +F +M    V
Sbjct: 75  GTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNV 134

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P R  V+S+LSA + L+ L+ GKQ HA  +  G E+D  + + +I+FY+K   ++    
Sbjct: 135 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 194

Query: 340 VFSRMVERDIVTWNLLIASYVQSG------------------------------------ 363
           +F +MV ++I++W  +I+ Y+Q+                                     
Sbjct: 195 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEA 254

Query: 364 ----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                           +S+  V + ++DMYAK   + +AK+VF+ +  ++V+ +N ++  
Sbjct: 255 LEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEG 314

Query: 408 YADLGRSGEASRLFYQMQLE-----------------------------------GISPN 432
           Y+   +  EA  LF++M++                                    G+S +
Sbjct: 315 YSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLD 374

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
           + + +++I  + +   + +A+ +F +M     + +++ W  +  G TQ+    EA+  + 
Sbjct: 375 LFAGSALIDVYSKCSYVKDARHVFEEMN----EKDIVVWNAMFFGYTQHLENEEALKLYS 430

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
            +  +  KP+  T    ++A +++ASLR+G+  H  L++  L     +  +LVDMYAKCG
Sbjct: 431 TLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCG 490

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           +I +A+++F+ S  +++  +N+MIS +A HG A EAL +F+ + ++GI P+ +TF  +L+
Sbjct: 491 SIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLS 550

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           ACSHAG V +GL  F  M     +KP  EH+ CVV+LL R G L EA   I  MP +P A
Sbjct: 551 ACSHAGXVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAA 609

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            +  SLLS C  +   EL +Y +E  +  +P + G+Y+ LSN +A+ G W +V +VRD M
Sbjct: 610 IVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRM 669

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
               + K PG SWI++  +++VF+A   +H + + I + L +L  H++
Sbjct: 670 DSSEVVKEPGRSWIEVNNKVNVFIARXTTHREADMIGSVLDILIQHIK 717



 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 166/559 (29%), Positives = 270/559 (48%), Gaps = 58/559 (10%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           +++L  +M+  N      +   +L  C     +  G+QIHA +L+ G     +  V   L
Sbjct: 122 SLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGT--EMDVSVVNVL 179

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           + FY KC+ +    +LF ++ VKN+ SW  +I    +     +A+  F EM   G  PD 
Sbjct: 180 IDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDG 239

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
           F   +VL +CG+L  +  GR VH Y +K   +   FV + LIDMY K   L +A+KVFD 
Sbjct: 240 FACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDV 299

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  +NV+++N+MI GY       EA+ +F+EM +    P+ ++  S+L  SA+L AL+  
Sbjct: 300 MAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELS 359

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           KQ H + +  G+ LD   GS++I+ YSK   ++DA  VF  M E+DIV WN +   Y Q 
Sbjct: 360 KQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQH 419

Query: 363 GQSD-----------------------VVVASS--------------------------- 372
            +++                       ++ A+S                           
Sbjct: 420 LENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVT 479

Query: 373 --IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
             +VDMYAKC  I+ A+++FNS I RDVV WN++++ +A  G + EA  +F +M  EGI 
Sbjct: 480 NALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQ 539

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
           PN +++ +V+      G + +  + F  M   G++P    +  ++S L ++    EA  F
Sbjct: 540 PNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAKEF 599

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
            ++M    I+P+       LSAC    ++  G+      I  D       +  L +++A 
Sbjct: 600 IEKM---PIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYIL-LSNIFAS 655

Query: 551 CGNIHQAKRVFDISPSKEL 569
            G     K+V D   S E+
Sbjct: 656 KGMWADVKKVRDRMDSSEV 674


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/693 (32%), Positives = 370/693 (53%), Gaps = 71/693 (10%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
           +LL+ C   R + T   IHA +L +G   A ++    KL+  Y+K  A+  A +LF    
Sbjct: 8   KLLKQC---RSLKTLTTIHAHLLISGSI-ASSDLTLNKLLRLYSKFGAVSYAHKLFDETP 63

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
             N F W A+I         E A   F++M  + + P NF + +VLKA   LG +  G  
Sbjct: 64  EPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDL 123

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           V+G  ++ G++  + V + +I+++ +CG++  AR++FD M  R+ V+WNSMI GY  NG 
Sbjct: 124 VYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGR 183

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-S 322
            + A ++F                                        + ME  NV+  +
Sbjct: 184 VDIARKLF----------------------------------------DRMEERNVISWT 203

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
           S+I  Y K G L +A V+F RM E+D+ +W +++++Y+  G    +VA            
Sbjct: 204 SMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGN---LVA------------ 248

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG 442
              A+ +F  + + DV  WN +++     G    A   F +MQ      N+ SW  +I G
Sbjct: 249 ---ARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQ----ERNVASWVMIIDG 301

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
           +++ G ++ A+ +F QM     + NL+ W+T+I G  +      ++  ++   E GIKP 
Sbjct: 302 YIKVGDVDAARSVFDQMP----EKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPD 357

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
            T     +SAC+ +       ++    +   L     +VTSL+DMYAKCGNI +A +VF+
Sbjct: 358 ETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFE 417

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
           +   K+L  Y+ +I+ +A HGL+ +A++LF  +Q+  I PD + F  +L AC+H GLV E
Sbjct: 418 MVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGE 477

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G  LF  M  ++ ++PS +H+ C+V++L R G L+EA  +I +MP  P+A + G+LLS C
Sbjct: 478 GRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSAC 537

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
                 +LAE  +  L Q+EP+N GNYV L N YA +G+W++ S+VR +++E  +RKN G
Sbjct: 538 RVHLNVQLAEAAATELFQIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRG 597

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            SWI++G  +H FV  D+SH  +E I+  L LL
Sbjct: 598 SSWIELGSVIHEFVMGDKSHFDSERIFFMLELL 630


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 243/778 (31%), Positives = 398/778 (51%), Gaps = 106/778 (13%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           +I+ L K  QI EA+ +   M  +N      +     +          G+   AR L +G
Sbjct: 21  KITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAK---------NGRISDARQLFDG 71

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA--L 167
               RN      ++  Y   D ++ A +LF ++  ++++SW  +I    R G   KA  L
Sbjct: 72  -MPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNL 130

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
              +  + + V             C A+        V GY     FD             
Sbjct: 131 FNLLPYKWNPV------------CCNAM--------VAGYAKNRQFD------------- 157

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV-------- 279
                  EAR++FD M A+++V+WNSM+ GY +NG     ++ F EM    V        
Sbjct: 158 -------EARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVD 210

Query: 280 -------------------EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
                               P  VS  ++L   A       GK A A  + + M + NV+
Sbjct: 211 GFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARF-----GKIAEARRLFDQMPIRNVV 265

Query: 321 G-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------- 366
             +++I  Y +   +++A  +F  M E++ ++W  +I  YV+ G+ D             
Sbjct: 266 AWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN 325

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
           V   ++++  Y + +R+D+A+Q+FN I +RDVV WNT++A Y+  GR  EA  LF QM  
Sbjct: 326 VAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQM-- 383

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
             +  +I+SWN+++  + + GQM+ A  +F +M+    + N+++W +LISGLTQN    +
Sbjct: 384 --VKKDIVSWNTMVASYAQVGQMDAAIKIFEEMK----EKNIVSWNSLISGLTQNGSYLD 437

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           A+  F  M   G KP  +T  C LS+C  +A+L+ G+ +H  +++        +  +L+ 
Sbjct: 438 ALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALIT 497

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MYAKCG+I  A+ +F      ++  +N++I+ YA++G   EAL LF  ++ +G+ PD +T
Sbjct: 498 MYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVT 557

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           F  IL+ACSH GL+++GL+LF  M   + ++P  EH+ C+V+LL R G L+EA +++  M
Sbjct: 558 FVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGM 617

Query: 667 PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726
             + +A I G+LL  C      ELA++ +E LL+ EP    NYV LSN  A +GRW+EV+
Sbjct: 618 KINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVA 677

Query: 727 QVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSK 784
           +VR +MKEKG  K PG SWI++   +H F++ D +HP+  E+   L  L  H+R  +K
Sbjct: 678 RVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVELCHILRSLTAHMRNTAK 735


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 236/739 (31%), Positives = 389/739 (52%), Gaps = 76/739 (10%)

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVFSWAAIIGLNC 158
           +H + +  G  F    ++ T L+  Y   ++   A  L  RL     +VF W  +I    
Sbjct: 180 LHQQSIMQGLLF----HLATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRAL 235

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
            +G        + +M+  G +PD++  P V KAC  L  +  G ++H  V + GF   VF
Sbjct: 236 HLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVF 295

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNV---VAWNSMIVGYVQNGLNEEAIRVFYEMT 275
           V ++++ MYGKCG L  A  +FD +  R +   V+WNS++  Y+       A+ +F++MT
Sbjct: 296 VCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMT 355

Query: 276 LEGV-EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
              +  P  +S+ +IL A A+L A   G+Q H  ++ +G+  D  +G+++++ Y+K G +
Sbjct: 356 TRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKM 415

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI- 393
           E+A  VF RM  +D+V+WN ++                    Y++  R+++A  +F  + 
Sbjct: 416 EEANKVFQRMKFKDVVSWNAMVTG------------------YSQAGRLEHALSLFERMT 457

Query: 394 ---ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLR 445
              I  DVV W  ++  YA  G+  EA  +F QM   G  PN+++  S++     +G L 
Sbjct: 458 EENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALL 517

Query: 446 NGQ-------------------------MNEAKDMFLQMQSL--------GVQP---NLI 469
           +G+                         +N   DM+ + QS          V P   +++
Sbjct: 518 HGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVV 577

Query: 470 TWTTLISGLTQNSCGNEAILFFQEM--LETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
           TWT +I G  Q+   N A+  F  M  ++  IKP+  T++CAL AC  +A+LR GR +H 
Sbjct: 578 TWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHA 637

Query: 528 YLIRHDL-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
           Y++R+    +   +   L+DMY+K G++  A+ VFD  P +    + ++++GY MHG   
Sbjct: 638 YVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGE 697

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
           +AL +F  +++  + PD ITF  +L ACSH+G+V+ G+  F  M  D  V P  EH+ C+
Sbjct: 698 DALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACM 757

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           V+L  R G L EA+++I  MP +P   +  +LLS C   +  EL E+ +  LL+LE  N 
Sbjct: 758 VDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGND 817

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTE 766
           G+Y  LSN YA + RW +V+++R  MK  G++K PGCSWIQ  + +  F   DRSHP+++
Sbjct: 818 GSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQ 877

Query: 767 EIYATLALLGMHVRLVSKV 785
           +IY TLA L   ++ +  V
Sbjct: 878 QIYETLADLIQRIKAIGYV 896



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 5/173 (2%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNE-YVETKLVVFYAKCDALDVASRLFCRLRV 144
           L  C     +  G+Q+HA +L+N  F+     +V   L+  Y+K   +D A  +F  +  
Sbjct: 620 LVACARLAALRFGRQVHAYVLRN--FYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQ 677

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +N  SW +++      G  E AL  F EM++  + PD      VL AC   G V  G   
Sbjct: 678 RNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINF 737

Query: 205 HGYVLK-VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
              + K  G D      + ++D++G+ G L EA K+ + M +    V W +++
Sbjct: 738 FNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALL 790


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/693 (32%), Positives = 373/693 (53%), Gaps = 64/693 (9%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL---RVKNVFSWAAII 154
            +Q+H++++       R  ++  +L+  YA+   L  A ++F  +    + ++  W +II
Sbjct: 47  ARQLHSQLVLTTAH--RLPFLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSII 104

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD 214
             N   G  + AL  +VEM++ G  PD F LP V++AC +LG     R VH + L++GF 
Sbjct: 105 RANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFR 164

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
             + V + L+ MYGK G +E+AR++FDGM  R++V+WN+M+ GY  N  +  A RVF  M
Sbjct: 165 NHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRM 224

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
            LEG++P  V+ TS+LS+ A     DE  +   V    G+E+                  
Sbjct: 225 ELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGA---------------- 268

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSG--QSDVVVASSIVDMYAKCERIDNAKQVFNS 392
           E   VV S   +   V W   I  YV  G  +  + V ++++  Y K + + +A +VF  
Sbjct: 269 EALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLE 328

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG------ISPNIISWNSVILGFLRN 446
           I  +++V WN L+++YA+ G   EA   F  M+         + PN+ISW++VI GF   
Sbjct: 329 IKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYK 388

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G+  ++ ++F QMQ   V  N +                                   TI
Sbjct: 389 GRGEKSLELFRQMQLAKVMANCV-----------------------------------TI 413

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
           +  LS C ++A+L  GR +HGY IR+ +     +   L++MY KCG+  +   VFD    
Sbjct: 414 SSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEG 473

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           ++L  +N++I GY MHGL   AL  F  + +  + PD+ITF  IL+ACSHAGLV  G  L
Sbjct: 474 RDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNL 533

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  M ++ +++P++EH+ C+V+LL R G L EA  ++  MP +P+ ++ G+LL++C    
Sbjct: 534 FDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCRMYK 593

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
           + ++ E  +  +L L+    G+++ LSN YAA+GRW++ ++VR   + KGL+K PG SWI
Sbjct: 594 DMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVRVSARTKGLKKIPGQSWI 653

Query: 747 QIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           ++ ++++ F A +  H   E+IY  L  L +H+
Sbjct: 654 EVRKKVYTFSAGNLVHFGLEDIYVILEELNLHM 686



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 163/363 (44%), Gaps = 47/363 (12%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           E ++L   M+ R  +IG E    +L  C    ++  G++IH  ++K G  +    +V+  
Sbjct: 251 ETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGG--YEDYLFVKNA 308

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  Y K   +  A ++F  ++ KN+ SW A+I      GL ++A   F+ M++      
Sbjct: 309 LIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDH 368

Query: 182 NFVLPN-----------------------------------------VLKACGALGWVGF 200
           + V PN                                         VL  C  L  +  
Sbjct: 369 SLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNL 428

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           GR +HGY ++      + V + LI+MY KCGD +E   VFD +  R++++WNS+I GY  
Sbjct: 429 GRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGM 488

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +GL E A+R F EM    ++P  ++  +ILSA ++   +  G+      V       NV 
Sbjct: 489 HGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVE 548

Query: 321 G-SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVV--VASSIVDM 376
             + +++   + GLL++A  +   M +E +   W  L+ S       D+V   AS I+ +
Sbjct: 549 HYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTL 608

Query: 377 YAK 379
            +K
Sbjct: 609 KSK 611


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/704 (32%), Positives = 369/704 (52%), Gaps = 95/704 (13%)

Query: 159 RVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
           R  L   A+  FV++  D   + DNF  P V+KAC      G G  +HG V+K+G    V
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL- 276
           FV ++LI MYGK G ++ A KVF  M  RN+V+WNS+I G+ +NG +++   +  EM   
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAG 126

Query: 277 -EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            EG+ P   ++ ++L   A    +  G + H +AV  G+  D  + +S+++ YSK G L 
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLT 186

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSG-------------------------------- 363
           +A+++F +   ++ V+WN +I      G                                
Sbjct: 187 EAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246

Query: 364 ---------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                Q D +VA+  V  YAKC  +  A++VF S+  + V  WN
Sbjct: 247 LEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWN 306

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG-------------------- 442
            L+   A  G   +A  L+ QM   G+ P+  +  S++L                     
Sbjct: 307 ALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRH 366

Query: 443 ---------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
                          ++  G+ + A+ +F  M+    + + ++W  +ISG +QN    +A
Sbjct: 367 GLEIDSFIGISLLSLYIHCGESSSARLLFDGME----EKSSVSWNAMISGYSQNGLPEDA 422

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
           ++ F++++  G +PS   +   L AC+  ++LR G+  H Y ++  L     +  S +DM
Sbjct: 423 LILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDM 482

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           YAK G I +++ VFD   +K+L  +NA+I+ Y +HG   E++ LF+ +++ G  PD  TF
Sbjct: 483 YAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTF 542

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
             IL  CSHAGLV EGL+ F  M + H ++P +EH+ CV+++L R G LD+ALR++  MP
Sbjct: 543 IGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMP 602

Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
             PD+ +  SLLS C    E E+ + ++E LL+LEP N  NYV+LSN YA SGRW++V +
Sbjct: 603 EQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRR 662

Query: 728 VRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
           VR ++K+ GL+K+ GCSWI++G ++H FVA D   P+++E+  T
Sbjct: 663 VRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMT 706


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/763 (30%), Positives = 380/763 (49%), Gaps = 93/763 (12%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           +IHA  +  G     +  +   L+  YAK   +  A ++F  L  ++  SW A++    +
Sbjct: 64  EIHATSVVRG--LGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQ 121

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            GL ++A   + +M    V P  +VL +VL AC        GR +H  V K  F    FV
Sbjct: 122 RGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFV 181

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            ++LI +Y   G  + A +VF  M+  + V +N++I G+ Q G  E A+++F EM L G+
Sbjct: 182 GNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGL 241

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P  V+V S+L+A A++  L +GKQ H+  +  GM  D +   S+++ Y K G +E A  
Sbjct: 242 RPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHD 301

Query: 340 VFSRMVERDIVTWNLLIASYVQ-----------------------------------SGQ 364
           +F+     ++V WNL++ +Y Q                                   +GQ
Sbjct: 302 IFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQ 361

Query: 365 -----------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                            SD+ V+  ++DMY+K   +D A+++   +  RDVV W +++A 
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIIS-------------------------------- 435
           Y       EA   F +MQ  G+ P+ I                                 
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 436 ---WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
              WN+++  + R G+  EA  +F ++       + ITW  LISG  Q+    +A++ F 
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFREID----HKDEITWNGLISGFGQSRLYEQALMVFM 537

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           +M + G K +  T   A+SA  ++A ++ G+ +HG  ++      T +  +L+ +Y KCG
Sbjct: 538 KMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCG 597

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           +I  AK +F     +    +N +I+  + HG  +EAL LF  ++Q+G+ P+ +TF  +L 
Sbjct: 598 SIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLA 657

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           ACSH GLV EGL  F  M + + + P  +H+ CVV++L R G LD A R +  MP   +A
Sbjct: 658 ACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANA 717

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            I  +LLS C      E+ E  ++HLL+LEP +  +YV LSNAYA +G+W    QVR +M
Sbjct: 718 MIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMM 777

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           K++G+RK PG SWI++   +H F   DR HP +++IY  L+ L
Sbjct: 778 KDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSEL 820


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/812 (28%), Positives = 396/812 (48%), Gaps = 124/812 (15%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  + Q C   + +  G+Q HA+I   G  F    +V   L+ FY KC  L+ A  +F +
Sbjct: 41  FSHIFQKCSNLKAINPGKQAHAQITVTG--FVPTVFVSNCLLQFYCKCLNLNYAFNVFDK 98

Query: 142 LRVKNVFSWAAII-----------------------------GLNCRV--GLSEKALIGF 170
           +  ++V SW  +I                              L+C +  G   K++  F
Sbjct: 99  MPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIF 158

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M+   +  D      VLKAC  +   G G  VH   +++GFD  V   ++L+DMY  C
Sbjct: 159 TKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTC 218

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             L+ A  +F  M  RN V W+++I GYV+N    E ++++  M  EG+  ++ +  S  
Sbjct: 219 KKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAF 278

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS-------- 342
            + A L A + G Q HA A+      DN++G++ ++ Y+K   + DA  VF+        
Sbjct: 279 RSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQ 338

Query: 343 ----------------------RMVERDIVTWNLL-----------IASYVQSGQ----- 364
                                 R +++  + ++ +           I  Y++  Q     
Sbjct: 339 SHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLA 398

Query: 365 ------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                  ++ VA++I+DMYAKC  +  A  +F+ + ++D V WN ++AA+       E  
Sbjct: 399 VKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETL 458

Query: 419 RLFYQMQLEGISPNIISWNSVILG-----------------------------------F 443
            LF  M    + P+  ++ SV+                                     +
Sbjct: 459 ALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMY 518

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            + G + EA+ +  +++    +   ++W ++ISG +    G  A+ +F  ML+ G+ P  
Sbjct: 519 CKCGMLVEAEKIHERLE----ERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDN 574

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            T    L  C ++A++  G+ IHG +++  L     I +++VDMY+KCGN+  ++ +F+ 
Sbjct: 575 FTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEK 634

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
           +P ++   ++AMI  YA HGL  +A+ LF+ +Q + + P+   F ++L AC+H G V++G
Sbjct: 635 APKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKG 694

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
           L  F  M S + + P MEH+ C+V+LL R G ++EAL +I +MP + D  I  +LL  C 
Sbjct: 695 LHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICR 754

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
                E+AE  +  LLQL+P +   YV LSN YA +G W EV+++R  MK   L+K PGC
Sbjct: 755 LQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGC 814

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           SWIQ+ +E+H F+  D++HP++EEIY    LL
Sbjct: 815 SWIQVRDEVHAFLVGDKAHPRSEEIYQQTHLL 846



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 131/533 (24%), Positives = 245/533 (45%), Gaps = 73/533 (13%)

Query: 279 VEPTR-VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           + PT+ ++ + I    +NL A++ GKQAHA   + G      + + ++ FY K   L  A
Sbjct: 33  MNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYA 92

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
             VF +M +RD+++WN +I  Y   G                   ++ A+ +F+S+  RD
Sbjct: 93  FNVFDKMPQRDVISWNTMIFGYAGVGN------------------MEFAQFLFDSMPERD 134

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQL------------------------------- 426
           VV WN++L+ Y   G   ++  +F +M+L                               
Sbjct: 135 VVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHC 194

Query: 427 ----EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
                G   ++++  +++  +    +++ A ++F +M     + N + W+ +I+G  +N 
Sbjct: 195 LAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMP----ERNSVCWSAVIAGYVRND 250

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
              E +  ++ ML+ G+  S  T   A  +C  +++   G  +H Y ++ +      + T
Sbjct: 251 RFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGT 310

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
           + +DMYAKC  +  A++VF+  P+     +NA+I GYA     +EAL +F++LQ+  +D 
Sbjct: 311 ATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDF 370

Query: 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN----LLSRCGNLDE 658
           D I+ +  L ACS      EG++L  G+     VK  ++   CV N    + ++CG L E
Sbjct: 371 DEISLSGALTACSAIKGYLEGIQLH-GL----AVKCGLDFNICVANTILDMYAKCGALME 425

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETE--LAEYISEHLLQLEPDNPGNYVALSNAY 716
           A  +   M    DA    ++++   ++   E  LA ++S     +EPD+   + ++  A 
Sbjct: 426 ACLIFDDMEI-KDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDY-TFGSVVKAC 483

Query: 717 AASGRWNEVSQV--RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEE 767
           A     N   +V  R I    GL    G + I +  +  + V  ++ H + EE
Sbjct: 484 AGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEE 536



 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 6/353 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++  + + + E + L   M     +     +G +++ C  K+ +  G ++H R++K+G 
Sbjct: 445 IAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSG- 503

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               + +V + ++  Y KC  L  A ++  RL  +   SW +II         E AL  F
Sbjct: 504 -MGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYF 562

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M + GV PDNF    VL  C  L  V  G+ +HG +LK+     V++AS+++DMY KC
Sbjct: 563 SRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKC 622

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G+++++R +F+    R+ V W++MI  Y  +GL E+AI++F EM L+ V+P      S+L
Sbjct: 623 GNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVL 682

Query: 291 SASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDA-EVVFSRMVERD 348
            A A++  +D+G      +    G++      S +++   + G + +A E++ S   E D
Sbjct: 683 RACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEAD 742

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
            V W  L+   +   Q +V VA    +   + +  D++  V  S +     +W
Sbjct: 743 DVIWRTLLG--ICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMW 793


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/763 (30%), Positives = 381/763 (49%), Gaps = 93/763 (12%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           +IHA  +  G     +  +   L+  YAK   +  A ++F  L  ++  SW A++    +
Sbjct: 64  EIHATSVVRG--LGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQ 121

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            GL ++A   + +M    V P  +VL +VL AC        GR +H  V K  F    FV
Sbjct: 122 SGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFV 181

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            ++LI +Y   G  + A +VF  M+  + V +N++I G+ Q G  E A+++F EM L G+
Sbjct: 182 GNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGL 241

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P  V+V S+L+A A++  L +GKQ H+  +  GM  D +   S+++ Y K G +E A  
Sbjct: 242 RPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHD 301

Query: 340 VFSRMVERDIVTWNLLIASYVQ-----------------------------------SGQ 364
           +F+     ++V WNL++ +Y Q                                   +GQ
Sbjct: 302 IFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQ 361

Query: 365 -----------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                            SD+ V+  ++DMY+K   +D A+++   +  RDVV W +++A 
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIIS-------------------------------- 435
           Y       EA   F +MQ  G+ P+ I                                 
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 436 ---WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
              WN+++  + R G+  EA  +F +++      + ITW  LISG  Q+    +A++ F 
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFREIE----HKDEITWNGLISGFGQSRLYKQALMVFM 537

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           +M + G K +  T   A+SA  ++A ++ G+ +HG  ++      T +  +L+ +Y KCG
Sbjct: 538 KMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCG 597

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           +I  AK +F     +    +N +I+  + HG  +EAL LF  ++Q+G+ P+ +TF  +L 
Sbjct: 598 SIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLA 657

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           ACSH GLV EGL  F  M + + + P  +H+ CVV++L R G LD A R +  MP   +A
Sbjct: 658 ACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANA 717

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            I  +LLS C      E+ E  ++HLL+LEP +  +YV LSNAYA +G+W    QVR +M
Sbjct: 718 MIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMM 777

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           K++G+RK PG SWI++   +H F   DR HP +++IY  L+ L
Sbjct: 778 KDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSEL 820


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/762 (30%), Positives = 378/762 (49%), Gaps = 93/762 (12%)

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
           IHA+ +  G     +      L+  YAK   +  A R+F +L  ++  SW A++    R 
Sbjct: 64  IHAKAITCG--LGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARN 121

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           GL E+A+  + +M   GV P  +VL +VL AC        GR VH  V K G      V 
Sbjct: 122 GLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVG 181

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++LI +Y + G L  A +VF  M   + V +N++I  + Q G  E A+ +F EM L G  
Sbjct: 182 NALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWT 241

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P  V++ S+L+A A++  L++GKQ H+  +  GM  D ++  S+++ Y K G++ +A  +
Sbjct: 242 PDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEI 301

Query: 341 FSRMVERDIVTWNLLIASY----------------------------------------- 359
           F      ++V WNL++ +Y                                         
Sbjct: 302 FKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEI 361

Query: 360 ----------VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                     +++G +SD+ V+  ++DMY+K   +D A+++   +  +DVV W +++A Y
Sbjct: 362 NLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGY 421

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIIS--------------------------------- 435
                  EA   F  MQL GI P+ I                                  
Sbjct: 422 VQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADV 481

Query: 436 --WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
             WN+++  + R G+  EA  +F  ++      + ITW  ++SG  Q+    EA+  F +
Sbjct: 482 SIWNALVNLYARCGRSKEAFSLFEAIE----HKDKITWNGMVSGFAQSGLYEEALEVFIK 537

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M + G+K +  T   ++SA  ++A ++ G+ IH  +I+      T +  +L+ +Y KCG+
Sbjct: 538 MYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGS 597

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           I  AK  F     +    +N +I+  + HG  +EAL LF  ++Q+G+ P+ +TF  +L A
Sbjct: 598 IEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAA 657

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           CSH GLV EGL  F  M S+H + P  +H+ CVV++L R G LD A + +  MP   +A 
Sbjct: 658 CSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAM 717

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           +  +LLS C      E+ E  +++LL+LEP +  +YV LSNAYA +G+W     VR +MK
Sbjct: 718 VWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMK 777

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           ++G+RK PG SWI++   +H F   DR HP   +IY  LA L
Sbjct: 778 DRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADL 819


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/753 (30%), Positives = 394/753 (52%), Gaps = 41/753 (5%)

Query: 25  LSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRN-FQIGPEIYG 83
           + +T L+KLR   +S E         I+SL K+K   EA+     ++ +  F +    Y 
Sbjct: 16  VKETVLSKLRAEQSSNE--------YITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYA 67

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
            L+  C Y R +  G++IH  +LK+      +  ++  ++  Y KC +L  A ++F  + 
Sbjct: 68  YLISACSYLRSLEHGKKIHDHMLKSKSH--PDLTLQNHILNMYGKCKSLKDAQKVFDAMP 125

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            +NV SW ++I    + G    AL  + +M + GV PD F   +++KAC +LG +G GR 
Sbjct: 126 ERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQ 185

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +H +VLK  F   +   ++LI MY K   + +A  VF  M  R++++W SMI G+ Q G 
Sbjct: 186 LHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGY 245

Query: 264 NEEAIRVFYEMTLEGVE-PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             EA+  F EM  +GV  P      S+ SA ++L   + G+Q H +++  G+  D   G 
Sbjct: 246 ELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGC 305

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
           S+ + Y+K GLL  A VVF ++   D+V WN +IA +   G +               E 
Sbjct: 306 SLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAK--------------EA 351

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE------GISPNIISW 436
           I    Q+ +  ++ D +   +LL A          S L+  MQ+       G+  ++   
Sbjct: 352 IAFFSQMRHQGLIPDEITVRSLLCA------CTSPSELYQGMQVHGYINKMGLDLDVPVC 405

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           N+++  + +  ++ +A   F +M+      +L++W  +++   ++    E     + M  
Sbjct: 406 NTLLTMYAKCSELRDAIFFFEEMR---CNADLVSWNAILTACMRHDQAEEVFRLLKLMCI 462

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
           +  +P   T+T  L A  +  S+  G  +H Y ++  L   T +   L+D+YAKCG++  
Sbjct: 463 SQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKT 522

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A ++FD   + ++  ++++I GYA  G   EAL LFK +++  + P+ +TF  +L ACSH
Sbjct: 523 AHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSH 582

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            GLV EG +L+  M  +  + P+ EH  C+V+LL+R G L+EA   I  M  DPD  +  
Sbjct: 583 VGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWK 642

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +LL+ C      ++ +  +E++L+++P N   +V L N YA+ G W +V+++R +MK++G
Sbjct: 643 TLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRG 702

Query: 737 LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           +RK PG SWI++ + +HVF   D  HP+  +IY
Sbjct: 703 VRKVPGQSWIEVKDRIHVFFVEDSLHPERNKIY 735


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/688 (32%), Positives = 368/688 (53%), Gaps = 65/688 (9%)

Query: 100 QIHARILKNGDFFARNE-YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           Q HARILK+G   A+N+ Y+  KL+  Y+  +  + A  +   +    ++S++++I    
Sbjct: 36  QAHARILKSG---AQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +  L  +++  F  M   G+ PD+ VLPN+ K C  L     G+ +H      G D   F
Sbjct: 93  KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V  S+  MY +CG + +ARKVFD M  ++VV  ++++  Y + G  EE +R+  EM   G
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-----GMELDNVLGSSIINFYSKVGL 333
           +E   VS   ILS          G    AV +       G   D V  SS++     VG 
Sbjct: 213 IEANIVSWNGILSGFNR-----SGYHKEAVVMFQKIHHLGFCPDQVTVSSVL---PSVG- 263

Query: 334 LEDAEVV-FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
             D+E++   R++   ++   LL          D  V S+++DMY K   +     +FN 
Sbjct: 264 --DSEMLNMGRLIHGYVIKQGLL---------KDKCVISAMIDMYGKSGHVYGIISLFNQ 312

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
             + +  + N  +   +  G   +A  +F   + + +  N++SW S+I G  +NG+  EA
Sbjct: 313 FEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEA 372

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
            ++F +MQ  GV+PN +                                   TI   L A
Sbjct: 373 LELFREMQVAGVKPNHV-----------------------------------TIPSMLPA 397

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C ++A+L +GR+ HG+ +R  L     + ++L+DMYAKCG I+ ++ VF++ P+K L  +
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCW 457

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
           N++++G++MHG A E +++F++L +  + PD I+FT++L+AC   GL +EG + F  M  
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSE 517

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
           ++ +KP +EH+ C+VNLL R G L EA  +I  MP +PD+ + G+LL++C   N  +LAE
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE 577

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
             +E L  LEP+NPG YV LSN YAA G W EV  +R+ M+  GL+KNPGCSWIQ+   +
Sbjct: 578 IAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRV 637

Query: 753 HVFVACDRSHPKTEEIYATLALLGMHVR 780
           +  +A D+SHP+ ++I   +  +   +R
Sbjct: 638 YTLLAGDKSHPQIDQITEKMDEISKEMR 665



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 141/559 (25%), Positives = 242/559 (43%), Gaps = 109/559 (19%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I +L+K K   +++ + + M          +   L + C        G+QIH   
Sbjct: 83  SFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVS 142

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK-------------------- 145
             +G     + +V+  +   Y +C  +  A ++F R+  K                    
Sbjct: 143 CVSG--LDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEE 200

Query: 146 ---------------NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLK 190
                          N+ SW  I+    R G  ++A++ F ++   G  PD   + +VL 
Sbjct: 201 VVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLP 260

Query: 191 ACGALGWVGFGRAVHGYVLKVGF--DGCVFVASSLIDMYGKCGDLEEARKVF-------- 240
           + G    +  GR +HGYV+K G   D CV   S++IDMYGK G +     +F        
Sbjct: 261 SVGDSEMLNMGRLIHGYVIKQGLLKDKCVI--SAMIDMYGKSGHVYGIISLFNQFEMMEA 318

Query: 241 ------------DGMIAR---------------NVVAWNSMIVGYVQNGLNEEAIRVFYE 273
                       +G++ +               NVV+W S+I G  QNG + EA+ +F E
Sbjct: 319 GVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFRE 378

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV-LGSSIINFYSKVG 332
           M + GV+P  V++ S+L A  N+ AL  G+  H  AV   + LDNV +GS++I+ Y+K G
Sbjct: 379 MQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHL-LDNVHVGSALIDMYAKCG 437

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
            +  +++VF+ M  +++V WN L+  +   G++  V++                  +F S
Sbjct: 438 RINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMS------------------IFES 479

Query: 393 IILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNG 447
           ++      D + + +LL+A   +G + E  + F  M  E GI P +  ++ ++    R G
Sbjct: 480 LMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAG 539

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLI-SGLTQNSCGNEAI----LFFQEMLETGIKPS 502
           ++ EA D+  +M     +P+   W  L+ S   QN+     I    LF  E    G    
Sbjct: 540 KLQEAYDLIKEMP---FEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVL 596

Query: 503 TTTITCALSACTDVASLRN 521
            + I  A    T+V S+RN
Sbjct: 597 LSNIYAAKGMWTEVDSIRN 615


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/702 (32%), Positives = 384/702 (54%), Gaps = 69/702 (9%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
            +++HA ++ +G    ++ ++  +LV  YA    + ++   F +++ K+V++W ++I   
Sbjct: 92  AKRLHALLVVSGKI--QSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAY 149

Query: 158 CRVGLSEKALIGFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
            R G   +A+  F ++        D +  P VLKAC  L     GR +H +V K+GF   
Sbjct: 150 VRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLV---DGRKIHCWVFKLGFQWD 206

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VFVA+SLI MY + G +  AR +FD M  R++ +WN+MI G +QNG   +A+ V  EM L
Sbjct: 207 VFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 266

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           EG+    V+V SIL   A L  +      H   + +G+E +  + +++IN Y+K G L D
Sbjct: 267 EGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGD 326

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAK 379
           A+ VF +M  RD+V+WN +IA+Y Q+                  + D++   S+  + A+
Sbjct: 327 AQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQ 386

Query: 380 CERIDNAKQVFNSIILRD-----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
                N++ V   I+ R      VV+ N ++  YA LG    A ++F  + ++    +++
Sbjct: 387 SRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK----DVV 442

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLG-VQPNLITWTTLISGLTQNSCGNEAILFFQE 493
           SWN++I G+ +NG  +EA +++  M+    ++ N  TW ++                   
Sbjct: 443 SWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSI------------------- 483

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
                           L+A   V +L+ G  IHG+LI+ +L L   + T L+D+Y KCG 
Sbjct: 484 ----------------LAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGR 527

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +  A  +F   P +    +NA+IS + +HG   +AL LF+ +Q +G+ PD +TF ++L+A
Sbjct: 528 LVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSA 587

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           CSH+GLV+EG + F  +  ++ +KPS++H+GC+V+LL R G L+ A   I  MP  PDA 
Sbjct: 588 CSHSGLVDEG-KWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDAS 646

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           I G+LL  C      EL ++ S+ L +++ +N G YV LSN YA  G+W  V +VR + +
Sbjct: 647 IWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLAR 706

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           E+GL+K PG S I++   + +F   ++SHPK +EIYA L +L
Sbjct: 707 ERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRIL 748



 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 123/470 (26%), Positives = 216/470 (45%), Gaps = 56/470 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS L +     +A+D+L EM+     +       +L  C    D+ T   IH  +
Sbjct: 240 SWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYV 299

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K+G  F    +V   L+  YAK   L  A ++F ++ +++V SW +II    +      
Sbjct: 300 IKHGLEF--ELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVT 357

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASSLI 224
           A   F +MQ +G+ PD   L ++             R+VHG++++ G+    V + ++++
Sbjct: 358 ARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVM 417

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTR 283
           DMY K G ++ A KVF+ +  ++VV+WN++I GY QNGL  EAI V+  M     ++  +
Sbjct: 418 DMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQ 477

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            +  SIL+A A++ AL +G + H   +   + LD  +G+ +I+ Y K G L DA  +F +
Sbjct: 478 GTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQ 537

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           +     V WN +I+                      C  I                    
Sbjct: 538 VPRESSVPWNAIIS----------------------CHGIH------------------- 556

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
                   G   +A +LF +MQ EG+ P+ +++ S++     +G ++E K  F  MQ  G
Sbjct: 557 --------GHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYG 608

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           ++P+L  +  ++  L +      A  F ++M    + P  +     L AC
Sbjct: 609 IKPSLKHYGCMVDLLGRAGFLEMAYDFIKDM---PLHPDASIWGALLGAC 655


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/713 (32%), Positives = 395/713 (55%), Gaps = 41/713 (5%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV---VFYAKCDALDVASRLFC 140
           +LL  C   +++   +Q+H  ++K G    +      KL+   V     ++LD A   F 
Sbjct: 30  KLLVNCKTLKEL---KQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFG 86

Query: 141 RL--RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
                + ++F +  +I      GL ++A++ +V+M   G+ PD +  P +L AC  +  +
Sbjct: 87  DDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILAL 146

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
             G  VHG VLK+G +G +FV++SLI  Y +CG ++  RK+FDGM+ RNVV+W S+I GY
Sbjct: 147 SEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGY 206

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
               L++EA+ +F++M   GVEP  V++  ++SA A L  L+ GK+  +     GMEL  
Sbjct: 207 SGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELST 266

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ-SGQSDVVV-------- 369
           ++ +++++ Y K G +  A  +F     +++V +N ++++YV     SDV+V        
Sbjct: 267 IMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQK 326

Query: 370 -----ASSIVDMYAKCERIDN--AKQVFNSIILRDVV-----LWNTLLAAYADLGRSGEA 417
                  +++   A C ++ +    +  ++ +LR+ +     + N ++  Y   G+   A
Sbjct: 327 GPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAA 386

Query: 418 SRLFYQMQLEGISPN--IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            ++F  M      PN  +++WNS+I G +R+G M  A  +F +M    ++ +L++W T+I
Sbjct: 387 CKVFEHM------PNKTVVTWNSLIAGLVRDGDMELAWRIFDEM----LERDLVSWNTMI 436

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
             L Q S   EAI  F+EM   GI     T+    SAC  + +L   + +  Y+ ++D+ 
Sbjct: 437 GALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIH 496

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           +   + T+LVDM+++CG+   A  VF     +++  + A I   AM G    A+ LF  +
Sbjct: 497 VDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEM 556

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
            ++ + PD + F  +L ACSH G V++G +LF  M   H ++P + H+GC+V+LL R G 
Sbjct: 557 LEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGL 616

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           L+EA+ +I +MP +P+  + GSLL+ C K    ELA Y +E L QL P+  G +V LSN 
Sbjct: 617 LEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNI 676

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YA++G+W +V++VR  MKEKG++K PG S I++   +H F + D SH +   I
Sbjct: 677 YASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHI 729


>gi|15241649|ref|NP_196466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171897|sp|Q9FNN9.1|PP370_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g08490
 gi|9759343|dbj|BAB09998.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003927|gb|AED91310.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 849

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/732 (31%), Positives = 396/732 (54%), Gaps = 45/732 (6%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL-DVASRLFC 140
           +  +L  CV   D Y G+ +H+ I+K G    ++  V   LV  YAK   +   A   F 
Sbjct: 125 FAIVLPLCVRLGDSYNGKSMHSYIIKAG--LEKDTLVGNALVSMYAKFGFIFPDAYTAFD 182

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG---W 197
            +  K+V SW AII       +   A   F  M ++   P+   + NVL  C ++     
Sbjct: 183 GIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIA 242

Query: 198 VGFGRAVHGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
              GR +H YV++  +    VFV +SL+  Y + G +EEA  +F  M ++++V+WN +I 
Sbjct: 243 CRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIA 302

Query: 257 GYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
           GY  N    +A ++F+ +  +G V P  V++ SIL   A L  L  GK+ H+  + +   
Sbjct: 303 GYASNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYL 362

Query: 316 L-DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS--------- 365
           L D  +G+++I+FY++ G    A   FS M  +DI++WN ++ ++  S +          
Sbjct: 363 LEDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHH 422

Query: 366 --------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV-------LWNTLLAAYAD 410
                   D V   S++      + I   K+V    +   ++       L N LL AYA 
Sbjct: 423 LLNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAK 482

Query: 411 LGRSGEASRLFYQMQLEGISP--NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
            G    A ++F      G+S    ++S+NS++ G++ +G  ++A+ +F +M +     +L
Sbjct: 483 CGNVEYAHKIFL-----GLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMST----TDL 533

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
            TW+ ++    ++ C NEAI  F+E+   G++P+T TI   L  C  +ASL   R  HGY
Sbjct: 534 TTWSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGY 593

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +IR  L     +  +L+D+YAKCG++  A  VF     ++L ++ AM++GYA+HG   EA
Sbjct: 594 IIRGGLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEA 652

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L ++ ++ +  I PD +  T +L AC HAGL+ +GL+++  + + H +KP+ME + C V+
Sbjct: 653 LMIYSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIRTVHGMKPTMEQYACAVD 712

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           L++R G LD+A   +  MP +P+A+I G+LL  C   N  +L   ++ HLLQ E D+ GN
Sbjct: 713 LIARGGRLDDAYSFVTQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGN 772

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           +V +SN YAA  +W  V ++R++MK+K ++K  GCSW+++  + +VFV+ D SHP+ + I
Sbjct: 773 HVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGQRNVFVSGDCSHPRRDSI 832

Query: 769 YATLALLGMHVR 780
           +  +  L + ++
Sbjct: 833 FDLVNALYLQMK 844



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 166/659 (25%), Positives = 298/659 (45%), Gaps = 120/659 (18%)

Query: 75  FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV 134
           F     ++ ++++ C    D+ +G+ +H  + K G        V   ++  YAKC  +D 
Sbjct: 17  FGTDHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSE--VSKSVLNMYAKCRRMDD 74

Query: 135 ASRLFCRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQ-EDGVSPDNFVLPNVLKAC 192
             ++F ++   +   W  ++ GL+   G   + +  F  M   D   P +     VL  C
Sbjct: 75  CQKMFRQMDSLDPVVWNIVLTGLSVSCG--RETMRFFKAMHFADEPKPSSVTFAIVLPLC 132

Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL-EEARKVFDGMIARNVVAW 251
             LG    G+++H Y++K G +    V ++L+ MY K G +  +A   FDG+  ++VV+W
Sbjct: 133 VRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSW 192

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD---ALDEGKQAHAV 308
           N++I G+ +N +  +A R F  M  E  EP   ++ ++L   A++D   A   G+Q H+ 
Sbjct: 193 NAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGRQIHSY 252

Query: 309 AVING-MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY-------- 359
            V    ++    + +S+++FY +VG +E+A  +F+RM  +D+V+WN++IA Y        
Sbjct: 253 VVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFK 312

Query: 360 --------VQSGQ--SDVVVASSIVDMYAKCERIDNAKQVF-----NSIILRDVVLWNTL 404
                   V  G    D V   SI+ + A+   + + K++      +S +L D  + N L
Sbjct: 313 AFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNAL 372

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           ++ YA  G +  A   F  M     + +IISWN+++  F          D   Q Q L +
Sbjct: 373 ISFYARFGDTSAAYWAFSLMS----TKDIISWNAILDAF---------ADSPKQFQFLNL 419

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
             +L+                EAI              + TI   L  C +V  +   + 
Sbjct: 420 LHHLLN---------------EAITL-----------DSVTILSLLKFCINVQGIGKVKE 453

Query: 525 IHGYLIR----HDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGY 579
           +HGY ++    HD   P  +  +L+D YAKCGN+  A ++F  +S  + L  YN+++SGY
Sbjct: 454 VHGYSVKAGLLHDEEEP-KLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGY 512

Query: 580 AMHG---------------------LAV----------EALALFKNLQQKGIDPDSITFT 608
              G                     L V          EA+ +F+ +Q +G+ P+++T  
Sbjct: 513 VNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIM 572

Query: 609 NILNACSHAG---LVNEGLELFV-GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
           N+L  C+      LV +     + G   D ++K      G ++++ ++CG+L  A  V 
Sbjct: 573 NLLPVCAQLASLHLVRQCHGYIIRGGLGDIRLK------GTLLDVYAKCGSLKHAYSVF 625



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 145/597 (24%), Positives = 277/597 (46%), Gaps = 78/597 (13%)

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G   D+ V  +V+KAC ++  +  GRA+HG V K+G   C  V+ S+++MY KC  +++ 
Sbjct: 16  GFGTDHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDDC 75

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL-EGVEPTRVSVTSILSASAN 295
           +K+F  M + + V WN ++ G +      E +R F  M   +  +P+ V+   +L     
Sbjct: 76  QKMFRQMDSLDPVVWNIVLTG-LSVSCGRETMRFFKAMHFADEPKPSSVTFAIVLPLCVR 134

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG-LLEDAEVVFSRMVERDIVTWNL 354
           L     GK  H+  +  G+E D ++G+++++ Y+K G +  DA   F  + ++D+V+WN 
Sbjct: 135 LGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNA 194

Query: 355 LIASYVQSG-QSDVVVA-------------SSIVDMYAKCERID------NAKQVFNSII 394
           +IA + ++   +D   +             ++I ++   C  +D      + +Q+ + ++
Sbjct: 195 IIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGRQIHSYVV 254

Query: 395 LRD-----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
            R      V + N+L++ Y  +GR  EA+ LF +M     S +++SWN VI G+  N + 
Sbjct: 255 QRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMG----SKDLVSWNVVIAGYASNCEW 310

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
            +A  +F  +   G                                   + P + TI   
Sbjct: 311 FKAFQLFHNLVHKG----------------------------------DVSPDSVTIISI 336

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLP-TPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
           L  C  +  L +G+ IH Y++RH   L  T +  +L+  YA+ G+   A   F +  +K+
Sbjct: 337 LPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSTKD 396

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA---GLVNE--G 623
           +  +NA++  +A      + L L  +L  + I  DS+T  ++L  C +    G V E  G
Sbjct: 397 IISWNAILDAFADSPKQFQFLNLLHHLLNEAITLDSVTILSLLKFCINVQGIGKVKEVHG 456

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
             +  G+  D + +P + +   +++  ++CGN++ A ++ L +          SLLS  V
Sbjct: 457 YSVKAGLLHDEE-EPKLGN--ALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYV 513

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            S   + A+ +     ++   +   +  +   YA S   NE   V   ++ +G+R N
Sbjct: 514 NSGSHDDAQML---FTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFREIQARGMRPN 567



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 5/196 (2%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA+ +  E++ R  +        LL  C     ++  +Q H  I++ G    R   ++  
Sbjct: 551 EAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGGLGDIR---LKGT 607

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  YAKC +L  A  +F     +++  + A++      G  ++AL+ +  M E  + PD
Sbjct: 608 LLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPD 667

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           +  +  +L AC   G +  G  ++  +  V G    +   +  +D+  + G L++A    
Sbjct: 668 HVFITTMLTACCHAGLIQDGLQIYDSIRTVHGMKPTMEQYACAVDLIARGGRLDDAYSFV 727

Query: 241 DGM-IARNVVAWNSMI 255
             M +  N   W +++
Sbjct: 728 TQMPVEPNANIWGTLL 743


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/688 (32%), Positives = 368/688 (53%), Gaps = 65/688 (9%)

Query: 100 QIHARILKNGDFFARNE-YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           Q HARILK+G   A+N+ Y+  KL+  Y+  +  + A  +   +    ++S++++I    
Sbjct: 36  QAHARILKSG---AQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +  L  +++  F  M   G+ PD+ VLPN+ K C  L     G+ +H      G D   F
Sbjct: 93  KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V  S+  MY +CG + +ARKVFD M  ++VV  ++++  Y + G  EE +R+  EM   G
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-----GMELDNVLGSSIINFYSKVGL 333
           +E   VS   ILS          G    AV +       G   D V  SS++     VG 
Sbjct: 213 IEANIVSWNGILSGFNR-----SGYHKEAVVMFQKIHHLGFCPDQVTVSSVL---PSVG- 263

Query: 334 LEDAEVV-FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
             D+E++   R++   ++   LL          D  V S+++DMY K   +     +FN 
Sbjct: 264 --DSEMLNMGRLIHGYVIKQGLL---------KDKCVISAMIDMYGKSGHVYGIISLFNQ 312

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
             + +  + N  +   +  G   +A  +F   + + +  N++SW S+I G  +NG+  EA
Sbjct: 313 FEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEA 372

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
            ++F +MQ  GV+PN +                                   TI   L A
Sbjct: 373 LELFREMQVAGVKPNHV-----------------------------------TIPSMLPA 397

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C ++A+L +GR+ HG+ +R  L     + ++L+DMYAKCG I+ ++ VF++ P+K L  +
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCW 457

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
           N++++G++MHG A E +++F++L +  + PD I+FT++L+AC   GL +EG + F  M  
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSE 517

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
           ++ +KP +EH+ C+VNLL R G L EA  +I  MP +PD+ + G+LL++C   N  +LAE
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE 577

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
             +E L  LEP+NPG YV LSN YAA G W EV  +R+ M+  GL+KNPGCSWIQ+   +
Sbjct: 578 IAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRV 637

Query: 753 HVFVACDRSHPKTEEIYATLALLGMHVR 780
           +  +A D+SHP+ ++I   +  +   +R
Sbjct: 638 YTLLAGDKSHPQIDQITEKMDEISKEMR 665



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 141/559 (25%), Positives = 242/559 (43%), Gaps = 109/559 (19%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I +L+K K   +++ + + M          +   L + C        G+QIH   
Sbjct: 83  SFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVS 142

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK-------------------- 145
             +G     + +V+  +   Y +C  +  A ++F R+  K                    
Sbjct: 143 CVSG--LDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEE 200

Query: 146 ---------------NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLK 190
                          N+ SW  I+    R G  ++A++ F ++   G  PD   + +VL 
Sbjct: 201 VVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLP 260

Query: 191 ACGALGWVGFGRAVHGYVLKVGF--DGCVFVASSLIDMYGKCGDLEEARKVF-------- 240
           + G    +  GR +HGYV+K G   D CV   S++IDMYGK G +     +F        
Sbjct: 261 SVGDSEMLNMGRLIHGYVIKQGLLKDKCVI--SAMIDMYGKSGHVYGIISLFNQFEMMEA 318

Query: 241 ------------DGMIAR---------------NVVAWNSMIVGYVQNGLNEEAIRVFYE 273
                       +G++ +               NVV+W S+I G  QNG + EA+ +F E
Sbjct: 319 GVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFRE 378

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV-LGSSIINFYSKVG 332
           M + GV+P  V++ S+L A  N+ AL  G+  H  AV   + LDNV +GS++I+ Y+K G
Sbjct: 379 MQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHL-LDNVHVGSALIDMYAKCG 437

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
            +  +++VF+ M  +++V WN L+  +   G++  V++                  +F S
Sbjct: 438 RINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMS------------------IFES 479

Query: 393 IILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNG 447
           ++      D + + +LL+A   +G + E  + F  M  E GI P +  ++ ++    R G
Sbjct: 480 LMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAG 539

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLI-SGLTQNSCGNEAI----LFFQEMLETGIKPS 502
           ++ EA D+  +M     +P+   W  L+ S   QN+     I    LF  E    G    
Sbjct: 540 KLQEAYDLIKEMP---FEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVL 596

Query: 503 TTTITCALSACTDVASLRN 521
            + I  A    T+V S+RN
Sbjct: 597 LSNIYAAKGMWTEVDSIRN 615


>gi|357464861|ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
 gi|355491760|gb|AES72963.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
          Length = 867

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/730 (33%), Positives = 392/730 (53%), Gaps = 47/730 (6%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV-ASRLFCRLR 143
           +L  C    ++  G+ +H  ++K+G  F  + +    LV  YAKC  +   A  +F  + 
Sbjct: 146 VLPVCARSGNLNGGKSVHGYVIKSG--FEMDTFAGNALVSMYAKCGLVACDAYAVFDSII 203

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG---WVGF 200
            K+V SW A+I      GL ++A   F  M +  V P+   + N+L  C +         
Sbjct: 204 HKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGSVKPNYATVANILPVCASFDENIAHRC 263

Query: 201 GRAVHGYVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           GR +H YVL+       V V ++L+  Y K G  +EA  +F  M AR++V+WN++I GY 
Sbjct: 264 GRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEAESLFWAMDARDLVSWNTIIAGYA 323

Query: 260 QNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL-D 317
            NG   +++ VF  + +LE +    V++ SIL A A LD L  GKQ HA  + +     D
Sbjct: 324 LNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPACAQLDNLQAGKQVHAYILRHPFLFED 383

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------- 363
              G+++++FY+K G +E+A   FS +  +D+++WN ++ ++ +                
Sbjct: 384 TSAGNALVSFYAKCGYIEEAYHTFSMISRKDLISWNSILDAFGEKRHHSRFLSLLHVMLK 443

Query: 364 ---QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW-------NTLLAAYADLGR 413
              + D V   +I+   A   R+   K++    I    +L        N +L AY+  G 
Sbjct: 444 LDIRPDSVTILTIIHFCASLLRVKKVKEIHGYSIRSGSLLCATAPTVGNAILDAYSKCGN 503

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
              A+++F  +  +    N+++ NS+I G++  G   +A  +F  M     + +L TW  
Sbjct: 504 IEYANKMFQNLSEK---RNLVTCNSLISGYVGLGSHYDANMIFSGMS----ETDLTTWNL 556

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-- 531
           ++    +N C  +A+  F ++   G+KP   TI   +  CT +AS+   R  HGY+IR  
Sbjct: 557 MVRVYAENDCPEQALELFLKLQTQGMKPDVVTIMSLIPVCTQMASVHLLRQCHGYIIRSS 616

Query: 532 -HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
             DL L      +L+D YAKCG I  A ++F  S  K+L ++ AMI GYAMHG++ +AL 
Sbjct: 617 FEDLHLKG----TLLDAYAKCGIIGYAYKIFQSSVDKDLVMFTAMIGGYAMHGMSEKALE 672

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
            F ++   GI PD + FT+IL+ACSHAG + EGL++F  +   H +KP++E F CVV+LL
Sbjct: 673 TFSHMLNMGIKPDHVIFTSILSACSHAGRIAEGLKIFDSIEKIHGMKPTIEQFACVVDLL 732

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
           +R G++ EA   +  +P + +A+I G+LL  C   +E EL   +++ L ++E ++ GNY+
Sbjct: 733 ARGGHVSEAYSFVTKIPIEANANIWGTLLGACKTYHEVELGRIVADKLFKIEANDIGNYI 792

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            LSN YAA  RW+ V +VR +M+ K L+K  GCSWI++    ++FV  D SHP+   IY+
Sbjct: 793 VLSNLYAADDRWDGVMEVRKMMRNKDLKKPAGCSWIEVERTNNIFVVGDCSHPQRNLIYS 852

Query: 771 TLALLGMHVR 780
           TL  L   V+
Sbjct: 853 TLCTLDQQVK 862



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 191/721 (26%), Positives = 339/721 (47%), Gaps = 91/721 (12%)

Query: 75  FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK-LVVFYAKCDALD 133
           F+   E+   +L+ C        G+ +H+ ++K G     + +V +K L+  YAKC  LD
Sbjct: 33  FKPDHEVLAAILKSCSALLASNLGKCLHSYVVKQGHV---SCHVTSKALLNMYAKCGMLD 89

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG-FVEMQEDG-VSPDNFVLPNVLKA 191
              +LF +    +   W  ++    R G ++  ++  F  M   G V P +  +  VL  
Sbjct: 90  DCHKLFDQFGRCDPVIWNIVLSGYSRSGKNDADVMKVFRAMHSSGEVMPSSVTIATVLPV 149

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLE-EARKVFDGMIARNVVA 250
           C   G +  G++VHGYV+K GF+   F  ++L+ MY KCG +  +A  VFD +I ++VV+
Sbjct: 150 CARSGNLNGGKSVHGYVIKSGFEMDTFAGNALVSMYAKCGLVACDAYAVFDSIIHKDVVS 209

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD---ALDEGKQAHA 307
           WN+MI G  +NGL +EA  +F  M    V+P   +V +IL   A+ D   A   G+Q H+
Sbjct: 210 WNAMIAGLAENGLLKEAFSLFSLMMKGSVKPNYATVANILPVCASFDENIAHRCGRQIHS 269

Query: 308 VAVINGMEL--DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ- 364
             V+   EL  D  + +++++FY KVG  ++AE +F  M  RD+V+WN +IA Y  +G+ 
Sbjct: 270 Y-VLQWPELSADVSVCNALLSFYLKVGRTKEAESLFWAMDARDLVSWNTIIAGYALNGEW 328

Query: 365 -SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL-----GRSGEAS 418
              + V  ++V +                ++L D V   ++L A A L     G+   A 
Sbjct: 329 LKSLHVFGNLVSL---------------EMLLLDSVTMVSILPACAQLDNLQAGKQVHAY 373

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
            L +    E  S      N+++  + + G + EA   F    S+  + +LI+W +++   
Sbjct: 374 ILRHPFLFEDTSAG----NALVSFYAKCGYIEEAYHTF----SMISRKDLISWNSILDAF 425

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD--LCL 536
            +    +  +     ML+  I+P + TI   +  C  +  ++  + IHGY IR    LC 
Sbjct: 426 GEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVKKVKEIHGYSIRSGSLLCA 485

Query: 537 PTPIV-TSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISG---------------- 578
             P V  +++D Y+KCGNI  A ++F ++S  + L   N++ISG                
Sbjct: 486 TAPTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHYDANMIFSG 545

Query: 579 ---------------YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
                          YA +    +AL LF  LQ +G+ PD +T  +++  C+    V+  
Sbjct: 546 MSETDLTTWNLMVRVYAENDCPEQALELFLKLQTQGMKPDVVTIMSLIPVCTQMASVH-- 603

Query: 624 LELFVGMFSDHQVKPSMEHF---GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
               +     + ++ S E     G +++  ++CG +  A + I     D D  +  +++ 
Sbjct: 604 ---LLRQCHGYIIRSSFEDLHLKGTLLDAYAKCGIIGYAYK-IFQSSVDKDLVMFTAMIG 659

Query: 681 TCVKSNETELAEYISEHLLQL--EPDNPGNYVALSNAYAASGRWNEVSQVRD-IMKEKGL 737
                  +E A     H+L +  +PD+   + ++ +A + +GR  E  ++ D I K  G+
Sbjct: 660 GYAMHGMSEKALETFSHMLNMGIKPDHV-IFTSILSACSHAGRIAEGLKIFDSIEKIHGM 718

Query: 738 R 738
           +
Sbjct: 719 K 719



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 149/545 (27%), Positives = 263/545 (48%), Gaps = 73/545 (13%)

Query: 149 SWAAIIGLNCRVGLSEKALIGFVEMQEDGVS--PDNFVLPNVLKACGALGWVGFGRAVHG 206
           +WA+ I   C      +AL  F    +D  +  PD+ VL  +LK+C AL     G+ +H 
Sbjct: 2   TWASTIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASNLGKCLHS 61

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE- 265
           YV+K G   C   + +L++MY KCG L++  K+FD     + V WN ++ GY ++G N+ 
Sbjct: 62  YVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKNDA 121

Query: 266 EAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           + ++VF  M   G V P+ V++ ++L   A    L+ GK  H   + +G E+D   G+++
Sbjct: 122 DVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFEMDTFAGNAL 181

Query: 325 INFYSKVGLLE-DAEVVFSRMVERDIVTWNLLIASYVQSG-------QSDVVVASSIVDM 376
           ++ Y+K GL+  DA  VF  ++ +D+V+WN +IA   ++G          +++  S+   
Sbjct: 182 VSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGSVKPN 241

Query: 377 YAK-------CERIDN------AKQVFNSIILR------DVVLWNTLLAAYADLGRSGEA 417
           YA        C   D        +Q+ +S +L+      DV + N LL+ Y  +GR+ EA
Sbjct: 242 YATVANILPVCASFDENIAHRCGRQI-HSYVLQWPELSADVSVCNALLSFYLKVGRTKEA 300

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
             LF+ M     + +++SWN++I G+  NG+          ++SL V  NL++   L+  
Sbjct: 301 ESLFWAMD----ARDLVSWNTIIAGYALNGEW---------LKSLHVFGNLVSLEMLL-- 345

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
                                    + T+   L AC  + +L+ G+ +H Y++RH     
Sbjct: 346 -----------------------LDSVTMVSILPACAQLDNLQAGKQVHAYILRHPFLFE 382

Query: 538 -TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
            T    +LV  YAKCG I +A   F +   K+L  +N+++  +         L+L   + 
Sbjct: 383 DTSAGNALVSFYAKCGYIEEAYHTFSMISRKDLISWNSILDAFGEKRHHSRFLSLLHVML 442

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELF-VGMFSDHQVKPSMEHFG-CVVNLLSRCG 654
           +  I PDS+T   I++ C+    V +  E+    + S   +  +    G  +++  S+CG
Sbjct: 443 KLDIRPDSVTILTIIHFCASLLRVKKVKEIHGYSIRSGSLLCATAPTVGNAILDAYSKCG 502

Query: 655 NLDEA 659
           N++ A
Sbjct: 503 NIEYA 507



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLE--TGIKPSTTTITCALSACTDVASLRNGRAIH 526
           +TW + I  L  +S  NEA+ FF   L+     KP    +   L +C+ + +   G+ +H
Sbjct: 1   MTWASTIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASNLGKCLH 60

Query: 527 GYLIR--HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
            Y+++  H  C  T    +L++MYAKCG +    ++FD     +  ++N ++SGY+  G 
Sbjct: 61  SYVVKQGHVSCHVTS--KALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGK 118

Query: 585 -AVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEG 623
              + + +F+ +   G + P S+T   +L  C+ +G +N G
Sbjct: 119 NDADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGG 159


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 236/753 (31%), Positives = 390/753 (51%), Gaps = 69/753 (9%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
            LQ  +    +  G    AR L  GD    N      ++  YAK  +L  A  LF R+  
Sbjct: 64  FLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPR 123

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS-PDNFVLPNVLKACGALGWVGFGRA 203
           ++V SW  ++    + G    A+  FV M+  G S P+ F     +K+CGALGW      
Sbjct: 124 RDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQ 183

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK------------------------- 238
           + G + K GF G   VA+ ++DM+ +CG ++ A K                         
Sbjct: 184 LLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYG 243

Query: 239 ------VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
                 +F+ M  R+VV+WN M+    Q+G   EA+ V  +M   GV     + TS L+A
Sbjct: 244 VDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTA 303

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A L +L  GKQ HA  + +   +D  + S+++  Y+K G  ++A  VFS + +R+ V+W
Sbjct: 304 CAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSW 363

Query: 353 NLLIASYVQSG------------QSDVVVAS--SIVDMYAKCE-RIDN--AKQV----FN 391
            +LI  ++Q G            +++++     ++  + + C  R+D   A+Q+      
Sbjct: 364 TVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLK 423

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
           S   R VV+ N+L++ YA  G    A  +F  M+      +I+SW  ++  + + G + +
Sbjct: 424 SGHTRAVVISNSLISMYAKCGNLQNAESIFSSME----ERDIVSWTGMLTAYSQVGNIGK 479

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTITCAL 510
           A++ F  M +     N+ITW  ++    Q+    + +  +  ML E  + P   T     
Sbjct: 480 AREFFDGMST----RNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLF 535

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
             C D+ + + G  I G+ ++  L L T ++ +++ MY+KCG I +A+++FD    K+L 
Sbjct: 536 RGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLV 595

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
            +NAMI+GY+ HG+  +A+ +F ++ +KG  PD I++  +L++CSH+GLV EG   F  +
Sbjct: 596 SWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDML 655

Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETEL 690
             DH V P +EHF C+V+LL+R GNL EA  +I  MP  P A + G+LLS C      EL
Sbjct: 656 KRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNEL 715

Query: 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGE 750
           AE  ++HL  L+  + G Y+ L+  YA +G+  + +QVR +M++KG++KNPG SW+++  
Sbjct: 716 AELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKN 775

Query: 751 ELHVFVACDRSHP-------KTEEIYATLALLG 776
           ++HVF A D SHP       K +E+   +A LG
Sbjct: 776 KVHVFKAEDVSHPQVIAIREKLDELMEKIAQLG 808



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 219/468 (46%), Gaps = 60/468 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +S+LS+  + REA+ +  +M  R  ++    Y   L  C     +  G+Q+HA++
Sbjct: 261 SWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQV 320

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +++      + YV + +V  YAKC     A R+F  LR +N  SW  +IG   + G   +
Sbjct: 321 IRS--LPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSE 378

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           +L  F +M+ + ++ D F L  ++  C     +   R +H   LK G    V +++SLI 
Sbjct: 379 SLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLIS 438

Query: 226 MYGKCGDLE-------------------------------EARKVFDGMIARNVVAWNSM 254
           MY KCG+L+                               +AR+ FDGM  RNV+ WN+M
Sbjct: 439 MYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAM 498

Query: 255 IVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           +  Y+Q+G  E+ ++++  M T + V P  V+  ++    A++ A   G Q     V  G
Sbjct: 499 LGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVG 558

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373
           + LD  + +++I  YSK G + +A  +F  +  +D+V+WN +I  Y Q G          
Sbjct: 559 LILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMG-------- 610

Query: 374 VDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLE-G 428
                       A ++F+ ++ +    D + +  +L++ +  G   E    F  ++ +  
Sbjct: 611 ----------KQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHN 660

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           +SP +  ++ ++    R G + EAK++  +M    ++P    W  L+S
Sbjct: 661 VSPGLEHFSCMVDLLARAGNLIEAKNLIDEMP---MKPTAEVWGALLS 705



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 115/273 (42%), Gaps = 46/273 (16%)

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLI-------------------------------R 531
           T  +  AL +C    +L   RA+HG L+                               R
Sbjct: 28  TQALADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLR 87

Query: 532 HDLCLPTPIVTS-LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
            D+  P  I  + +++ YAK G++  A+ +F   P +++  +N ++SGY   G  ++A+ 
Sbjct: 88  GDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAME 147

Query: 591 LFKNLQQKGID-PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
            F ++++ G   P++ TF   + +C   G     L+L +G+ +    +   +    +V++
Sbjct: 148 SFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQL-LGLLTKFGFQGDPDVATGIVDM 206

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
             RCG +D A +    +   P      S+L+   KS       Y  +H L+L    P   
Sbjct: 207 FVRCGAVDFASKQFSQIE-RPTVFCRNSMLAGYAKS-------YGVDHALELFESMPERD 258

Query: 710 VA----LSNAYAASGRWNEVSQVRDIMKEKGLR 738
           V     + +A + SGR  E   V   M  +G+R
Sbjct: 259 VVSWNMMVSALSQSGRAREALSVAVDMHNRGVR 291


>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/701 (32%), Positives = 378/701 (53%), Gaps = 67/701 (9%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           Q HA I+ +G  ++ N ++ +KL+  YA       ++ LF  +  ++ F W +II  +  
Sbjct: 53  QSHAFIITSG--YSNNIFIASKLISLYASFHKPSCSTELFDEIPHRDAFLWNSIIKAHFS 110

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVF 218
            G   +AL  +  M+     P++F +P ++ +C  L  V +GR++HG V K+G F G   
Sbjct: 111 NGEYSRALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGRSIHGLVSKLGLFSGSSA 170

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL-- 276
           V SS + MY KCG LEEA  VFD ++ R+VVAW ++++G VQNG ++  +    EM    
Sbjct: 171 VGSSFVYMYSKCGVLEEAYGVFDEILFRDVVAWTALVIGCVQNGESKMGLECLCEMHRIG 230

Query: 277 -EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            +G  P   ++     A  NL AL EG+  H + V  GM+   V+ S +++ YSK G  E
Sbjct: 231 GDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPE 290

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQS-----------------DVVVASSIVDMYA 378
           +A   F  ++ +DI++W  +I++Y + G +                 D +V S ++  ++
Sbjct: 291 EAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFS 350

Query: 379 KCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLF----------YQ 423
              R+  AK  F+ +I+R     D ++ N LL+ Y   G    A + F          + 
Sbjct: 351 NSMRVFEAK-AFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWN 409

Query: 424 MQLEG------------------ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
           + + G                  +  N+   NS+I  + ++G +  A+ +F +     + 
Sbjct: 410 LMVSGYGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCR-----IP 464

Query: 466 PNLITWTTLISGLTQNSCGN--EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
            +++TW TLIS      CG+  EA+  + +M+   +KP++ T+   LSAC+ +ASL  G 
Sbjct: 465 RDIVTWNTLISSYAH--CGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLASLEEGE 522

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
            +H Y+          I T+L+DMYAKCG + +++ +F+    +++  +N MISGY MHG
Sbjct: 523 KVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHG 582

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
            A  A+  F+ +++    P+ +TF  +L+AC+HAGLV EG  LF G   D+ V P+++H+
Sbjct: 583 DARSAIEFFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLF-GKMQDYSVAPNLKHY 641

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
            C+V+LL R GNL EA  ++L+MP  PD  + G+LLS+C   NE E+   I++H +  + 
Sbjct: 642 ACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNEIEMGIRIAKHAIDSDV 701

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
           +N G YV +SN Y++ G+W E  + R IMKE+G+RK  G S
Sbjct: 702 ENDGYYVMISNMYSSIGKWEEAEKARGIMKERGVRKKTGWS 742



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 107/244 (43%), Gaps = 17/244 (6%)

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           ++SL+     H ++I         I + L+ +YA       +  +FD  P ++  ++N++
Sbjct: 45  ISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIPHRDAFLWNSI 104

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGM 630
           I  +  +G    AL  ++ ++     P+  T   I+ +C+   LVN G  +      +G+
Sbjct: 105 IKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGRSIHGLVSKLGL 164

Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETEL 690
           FS      S       V + S+CG L+EA  V   +    D     +L+  CV++ E+++
Sbjct: 165 FSGSSAVGS-----SFVYMYSKCGVLEEAYGVFDEILFR-DVVAWTALVIGCVQNGESKM 218

Query: 691 A-EYISE-HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
             E + E H +  + + P N+  L   + A G    + + R +    GL    G  + Q+
Sbjct: 219 GLECLCEMHRIGGDGERP-NFRTLEGGFQACGNLGALLEGRCL---HGLVVKTGMDYSQV 274

Query: 749 GEEL 752
            + L
Sbjct: 275 VQSL 278


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 250/841 (29%), Positives = 429/841 (51%), Gaps = 101/841 (12%)

Query: 27  QTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELL 86
           QTHL  + +  NS           I   +K K     +   T+M+             +L
Sbjct: 18  QTHLVNVSKDWNSI----------IKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVL 67

Query: 87  QGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN 146
           + C     +  G +IH+ I   G     +  V T LV FY KC  +  AS++F  +  ++
Sbjct: 68  KACGRLNAIGNGVRIHSFI--RGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERD 125

Query: 147 VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHG 206
           + SW A+I         ++A++ FVEM++ G++P++  +  +L ACG +  +  G+ +HG
Sbjct: 126 LVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHG 185

Query: 207 YVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
           Y L+ G FD   +V ++L+  Y +  D   + +VF  M+ RN+V+WN++I G++  G   
Sbjct: 186 YCLRNGLFDMDAYVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCA 244

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           +A++++  M +EG++   V++  ++ A A    L  G Q H +A+   +  D  + ++++
Sbjct: 245 KALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALL 304

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------------- 363
           N YS  G LE +  +F+ +   D   WN +I+SY+  G                      
Sbjct: 305 NMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVR 364

Query: 364 -------------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNS 392
                                          + D  + ++++ MY K  +I  A+ VF  
Sbjct: 365 TIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEK 424

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQM---QLEGISPNIIS------------WN 437
           +   DV+ WNT+++A+A      +A  LF  M   +++  S  I+S            + 
Sbjct: 425 MRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFG 484

Query: 438 SVILGF-LRNG-QMNEA-----KDMFLQ---------MQSLGVQPNLITWTTLISGLTQN 481
             I GF ++NG ++N +      +M++          M +   Q +L++W +LIS   +N
Sbjct: 485 RSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKN 544

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP--TP 539
               +A+L F  M+ + ++P++ TI   L++CT +A L  G+ +H Y  R ++ L     
Sbjct: 545 DNAGKALLLFNHMI-SELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDAS 603

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           +  + + MYA+CG +  A+++F    ++ +  +NAMI+GY MHG   +A   F  +   G
Sbjct: 604 LANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDG 663

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
             P++++F ++L+ACSH+GL   GL+LF  M  D  + P + H+GC+V+LL R G+  EA
Sbjct: 664 FKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEA 723

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
           +  I +MP +PDA I  +LLS+C   +  +L E I   L++LEP NPGN++ LSN YAA+
Sbjct: 724 IAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAA 783

Query: 720 GRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           G W+EV Q+R  ++E+GL K PG SWI IG ++H F A D  HP++E IY  L  L   +
Sbjct: 784 GLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLI 843

Query: 780 R 780
           R
Sbjct: 844 R 844


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/646 (33%), Positives = 354/646 (54%), Gaps = 29/646 (4%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           GL  KA++ F ++   G  PDNF  P VL AC     +  G  VHG ++K+GF+  +FV 
Sbjct: 118 GLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVE 177

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           +SLI  YG+CG+++  R+VFD M  RNVV+W S+I GY + G  +EA+ +F+EM   G+ 
Sbjct: 178 NSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIR 237

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P  V++  ++SA A L  L  G+Q         +E++ ++ +++++ Y K G ++ A  +
Sbjct: 238 PNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKI 297

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVAS--------------SIVDMYAKCERIDN- 385
           F   V++++V +N ++++YV+ G +  V+A               +++   + C  +D+ 
Sbjct: 298 FDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDV 357

Query: 386 --AKQVFNSIILRDVVLW----NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              K     ++   +  W    N ++  Y   G+   A R+F +M    ++   +SWNS+
Sbjct: 358 SCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRM----LNKTRVSWNSL 413

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           I GF+RNG M  A  +F  M       +L++W T+I  L Q S   EAI  F+ M   GI
Sbjct: 414 IAGFVRNGDMESAWKIFSAMP----DSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGI 469

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
                T+    SAC  + +L   + IHGY+ + D+     + T+LVDM+A+CG+   A +
Sbjct: 470 TADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQ 529

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VF+    +++  + A I   AM G    A+ LF  + Q+GI PD + F  +L A SH GL
Sbjct: 530 VFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGL 589

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           V +G  +F  M   + + P   H+GC+V+LL R G L EAL +I +M  +P+  I GSLL
Sbjct: 590 VEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLL 649

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           + C      ++A Y +E + +L+P+  G +V LSN YA++GRW++V++VR  +KEKG  K
Sbjct: 650 AACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHK 709

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
            PG S I+I  ++  F   D SHP+   I   L  +   +R +  V
Sbjct: 710 MPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYV 755



 Score =  226 bits (576), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 163/562 (29%), Positives = 268/562 (47%), Gaps = 86/562 (15%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  C     +  G Q+H  I+K G  F R+ +VE  L+ FY +C  +D   R+F ++  
Sbjct: 145 VLSACTKSAALTEGFQVHGAIVKMG--FERDMFVENSLIHFYGECGEIDCMRRVFDKMSE 202

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +NV SW ++IG   + G  ++A+  F EM E G+ P++  +  V+ AC  L  +  G  V
Sbjct: 203 RNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQV 262

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
              + ++  +    + ++L+DMY KCG +++ARK+FD  + +N+V +N+++  YV+ GL 
Sbjct: 263 CTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLA 322

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME-LDNVLGSS 323
            E + V  EM   G  P R+++ S +SA + LD +  GK  H   + NG+E  DNV  ++
Sbjct: 323 REVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVC-NA 381

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
           IIN Y K G  E A  VF RM+ +  V+WN LIA +V++G                   +
Sbjct: 382 IINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGD------------------M 423

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           ++A ++F+++   D+V WNT++ A        EA  LF  MQ EGI+ + ++   V    
Sbjct: 424 ESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASAC 483

Query: 444 LRNGQMNEAK----------------------DMF---------LQMQSLGVQPNLITWT 472
              G ++ AK                      DMF         +Q+ +  V+ ++  WT
Sbjct: 484 GYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWT 543

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
             I  +     G  AI  F EML+ GIKP        L+A +           HG L+  
Sbjct: 544 AAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALS-----------HGGLVEQ 592

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
                  I  S+ D+Y              I+P  +   Y  M+      GL  EAL+L 
Sbjct: 593 GW----HIFRSMKDIYG-------------IAP--QAVHYGCMVDLLGRAGLLSEALSLI 633

Query: 593 KNLQQKGIDPDSITFTNILNAC 614
            ++Q   ++P+ + + ++L AC
Sbjct: 634 NSMQ---MEPNDVIWGSLLAAC 652



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 145/318 (45%), Gaps = 14/318 (4%)

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE----AKDMFLQMQSLGVQPNLITW 471
           E  +L  Q+   G++ + +S  ++I      G         K + L ++  G+      +
Sbjct: 48  ELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMF 107

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           ++LI G +    G +AI+ F++++  G  P   T    LSACT  A+L  G  +HG +++
Sbjct: 108 SSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVK 167

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
                   +  SL+  Y +CG I   +RVFD    + +  + ++I GYA  G   EA++L
Sbjct: 168 MGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSL 227

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  + + GI P+S+T   +++AC+    +  G E       + +++ +      +V++  
Sbjct: 228 FFEMVEVGIRPNSVTMVGVISACAKLQDLQLG-EQVCTCIGELELEVNALMVNALVDMYM 286

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           +CG +D+A R I     D +  +  +++S  V+         +   +L+  P  P     
Sbjct: 287 KCGAIDKA-RKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGP-RPDRITM 344

Query: 712 LSNAYAAS-------GRW 722
           LS   A S       G+W
Sbjct: 345 LSAVSACSELDDVSCGKW 362



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 20/255 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I +L +E   +EA++L   M+             +   C Y   +   + IH  I
Sbjct: 440 SWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYI 499

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K    F  + ++ T LV  +A+C     A ++F ++  ++V +W A IG     G    
Sbjct: 500 KKKDIHF--DMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTG 557

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKAC--GAL---GWVGFG--RAVHGYVLKVGFDGCVF 218
           A+  F EM + G+ PD  V   +L A   G L   GW  F   + ++G   +    GC  
Sbjct: 558 AIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGC-- 615

Query: 219 VASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVG-YVQNGLNEEAIRVFYEMTL 276
               ++D+ G+ G L EA  + + M +  N V W S++    V   ++   I  +    +
Sbjct: 616 ----MVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVD---IAAYAAERI 668

Query: 277 EGVEPTRVSVTSILS 291
             ++P R  +  +LS
Sbjct: 669 SELDPERTGIHVLLS 683


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 233/763 (30%), Positives = 383/763 (50%), Gaps = 101/763 (13%)

Query: 102 HARILKNG---DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           HAR +  G   D F  N      L+  Y+K   +  A RLF R+  KN+ SW + I ++ 
Sbjct: 34  HARAVVTGALPDLFLAN-----LLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHA 88

Query: 159 RVGLSEKALIGFVEMQE--DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
           + G  E A+  F   Q    G +P+ F+L + L+AC     V FG+ VHG  +++G DG 
Sbjct: 89  QHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGN 148

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V+V ++LI++Y K G ++ A  VFD +  +N V W ++I GY Q G    A+ +F +M L
Sbjct: 149 VYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGL 208

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           +GV P R  + S +SA + L  L+ G+Q H  A    +E D  + +++I+ Y K   L  
Sbjct: 209 DGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSL 268

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG--------------------------------- 363
           A  +F  M  R++V+W  +IA Y+Q+                                  
Sbjct: 269 ARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGS 328

Query: 364 -------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                              +SD  V +S++DMYAKCE +  A+ VF ++   D + +N +
Sbjct: 329 LAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAM 388

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISW---------------------------- 436
           +  Y+ LG    A  +F +M+   + P+ +++                            
Sbjct: 389 IEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGT 448

Query: 437 -------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
                  +S+I  + +   + +AK +F  M +     +++ W  +I GL QN  G EA+ 
Sbjct: 449 SLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHN----RDMVIWNAMIFGLAQNEQGEEAVK 504

Query: 490 FFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
            F ++  +G+ P+  T    ++  + + S+ +G+  H  +I+        +  +L+DMYA
Sbjct: 505 LFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYA 564

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           KCG I + + +F+ +  K++  +N+MIS YA HG A EAL +F+ +   G++P+ +TF  
Sbjct: 565 KCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVG 624

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669
           +L+AC+HAGLV+EGL  F  M + + ++P  EH+  VVNL  R G L  A   I  MP +
Sbjct: 625 VLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIE 684

Query: 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR 729
           P A +  SLLS C      E+  Y +E  L  +P + G  V +SN YA+ G W++  ++R
Sbjct: 685 PAAAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLR 744

Query: 730 DIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
             M   G+ K PG SWI++ +E+H F+A  R HP+ + IY+ L
Sbjct: 745 QGMDCAGVVKEPGYSWIEVMKEVHTFIARGREHPEADVIYSLL 787



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 216/418 (51%), Gaps = 24/418 (5%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           EA+ +  ++    +Q  P+++    +L  C     ++ G+Q+HA  +K       +EYV+
Sbjct: 299 EAMAMFWQLSQEGWQ--PDVFACASILNSCGSLAAIWQGRQVHAHAIKAN--LESDEYVK 354

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
             L+  YAKC+ L  A  +F  L   +  S+ A+I    R+G    A+  F +M+   + 
Sbjct: 355 NSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLK 414

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           P      ++L    +   +   + +HG ++K G    ++  SSLID+Y K   +E+A+ V
Sbjct: 415 PSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAV 474

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F+ M  R++V WN+MI G  QN   EEA+++F ++ + G+ P   +  ++++ ++ L ++
Sbjct: 475 FNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSM 534

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
             G+Q HA  +  G + D+ + +++I+ Y+K G +++  ++F   + +D++ WN +I++Y
Sbjct: 535 FHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTY 594

Query: 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
            Q GQ++              E +   + +  + +  + V +  +L+A A  G   E  R
Sbjct: 595 AQHGQAE--------------EALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLR 640

Query: 420 LFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
            F  M+ +  I P    + SV+  F R+G+++ AK+   +M    ++P    W +L+S
Sbjct: 641 HFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMP---IEPAAAVWRSLLS 695



 Score =  159 bits (401), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 181/396 (45%), Gaps = 85/396 (21%)

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG- 363
           AHA AV+ G   D  L + ++  YSK+G + DA  +F RM  +++V+W   I+ + Q G 
Sbjct: 33  AHARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGC 92

Query: 364 ---------------------------------QSDVV--------------------VA 370
                                            QS  V                    V 
Sbjct: 93  EEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVG 152

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           ++++++YAK   ID A  VF+++ +++ V W  ++  Y+ +G+ G A  LF +M L+G+ 
Sbjct: 153 TALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVR 212

Query: 431 PNIISWNSVI-----LGFLRNGQ-----------------MNEAKDMFLQMQSLGV---- 464
           P+     S +     LGFL  G+                 +N   D++ +   L +    
Sbjct: 213 PDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKL 272

Query: 465 -----QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
                  NL++WTT+I+G  QNSC  EA+  F ++ + G +P        L++C  +A++
Sbjct: 273 FDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAI 332

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
             GR +H + I+ +L     +  SL+DMYAKC ++ +A+ VF+     +   YNAMI GY
Sbjct: 333 WQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGY 392

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           +  G    A+ +F  ++   + P  +TF ++L   S
Sbjct: 393 SRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSS 428



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 185/380 (48%), Gaps = 13/380 (3%)

Query: 29  HLTKLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGE 84
           HLT+ R     +E+L +    SY   I   S+   +  A+D+ ++M+  + +  P  +  
Sbjct: 366 HLTEARAV---FEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVS 422

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL     +  +   +QIH  I+K+G   + + Y  + L+  Y+K   ++ A  +F  +  
Sbjct: 423 LLGVSSSQSAIELSKQIHGLIVKSGT--SLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHN 480

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +++  W A+I    +    E+A+  F ++Q  G++P+ F    ++     L  +  G+  
Sbjct: 481 RDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQF 540

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H  ++K G D    V+++LIDMY KCG ++E R +F+  + ++V+ WNSMI  Y Q+G  
Sbjct: 541 HAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQA 600

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVLGSS 323
           EEA+ VF  M   GVEP  V+   +LSA A+   +DEG +    +     +E      +S
Sbjct: 601 EEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYAS 660

Query: 324 IINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
           ++N + + G L  A+    RM +E     W  L+++    G  +V +     +M    + 
Sbjct: 661 VVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFG--NVEIGRYATEMALLADP 718

Query: 383 IDNAKQVFNSIILRDVVLWN 402
            D+   V  S I     LW+
Sbjct: 719 ADSGPSVLMSNIYASRGLWS 738


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 250/841 (29%), Positives = 429/841 (51%), Gaps = 101/841 (12%)

Query: 27  QTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELL 86
           QTHL  + +  NS           I   +K K     +   T+M+             +L
Sbjct: 18  QTHLVNVSKDWNSI----------IKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVL 67

Query: 87  QGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN 146
           + C     +  G +IH+ I   G     +  V T LV FY KC  +  AS++F  +  ++
Sbjct: 68  KACGRLNAIGNGVRIHSCI--RGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERD 125

Query: 147 VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHG 206
           + SW A+I         ++A++ FVEM++ G++P++  +  +L ACG +  +  G+ +HG
Sbjct: 126 LVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHG 185

Query: 207 YVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
           Y L+ G FD   +V ++L+  Y +  D   + +VF  M+ RN+V+WN++I G++  G   
Sbjct: 186 YCLRNGLFDMDAYVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCA 244

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           +A++++  M +EG++   V++  ++ A A    L  G Q H +A+   +  D  + ++++
Sbjct: 245 KALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALL 304

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------------- 363
           N YS  G LE +  +F+ +   D   WN +I+SY+  G                      
Sbjct: 305 NMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVR 364

Query: 364 -------------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNS 392
                                          + D  + ++++ MY K  +I  A+ VF  
Sbjct: 365 TIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEK 424

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQM---QLEGISPNIIS------------WN 437
           +   DV+ WNT+++A+A      +A  LF  M   +++  S  I+S            + 
Sbjct: 425 MRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFG 484

Query: 438 SVILGF-LRNG-QMNEA-----KDMFLQ---------MQSLGVQPNLITWTTLISGLTQN 481
             I GF ++NG ++N +      +M++          M +   Q +L++W +LIS   +N
Sbjct: 485 RSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKN 544

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP--TP 539
               +A+L F  M+ + ++P++ TI   L++CT +A L  G+ +H Y  R ++ L     
Sbjct: 545 DNAGKALLLFNHMI-SELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDAS 603

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           +  + + MYA+CG +  A+++F    ++ +  +NAMI+GY MHG   +A   F  +   G
Sbjct: 604 LANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDG 663

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
             P++++F ++L+ACSH+GL   GL+LF  M  D  + P + H+GC+V+LL R G+  EA
Sbjct: 664 FKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEA 723

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
           +  I +MP +PDA I  +LLS+C   +  +L E I   L++LEP NPGN++ LSN YAA+
Sbjct: 724 IAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAA 783

Query: 720 GRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           G W+EV Q+R  ++E+GL K PG SWI IG ++H F A D  HP++E IY  L  L   +
Sbjct: 784 GLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLI 843

Query: 780 R 780
           R
Sbjct: 844 R 844


>gi|225441321|ref|XP_002274344.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 739

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/712 (33%), Positives = 377/712 (52%), Gaps = 70/712 (9%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  LL  C    ++   ++IHA ++ +  F   +  V +KL+  Y++ +    A  +   
Sbjct: 54  YSSLLHSC---NNLQALKRIHASLIVSSGFQPLS--VASKLITLYSQLNDFRSAFSICNS 108

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW-VGF 200
               N   W +II  +   GL   AL+ +  M+E GV+ D+F  P + +A  +LG  V +
Sbjct: 109 FEEPNTVIWNSIIKSHVDSGLFGYALLQYGRMRELGVAHDSFTFPIINQAIWSLGCRVEY 168

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G  VH   +K+GF   V+  ++++++Y KCG +  A K+FD M  R++V+W S+I GY+ 
Sbjct: 169 GETVHCVAMKMGFGQDVYFGNTMLEVYVKCGSIGNASKLFDEMTHRDLVSWTSIISGYIY 228

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
                   ++F +M +E +EP  V++  +L A +  ++++EG++ H+  +  G  +D  +
Sbjct: 229 GESFSRGFKLFNKMRME-MEPNSVTMVVMLQACSAFESVNEGRELHSYVIKKGFMVDRSV 287

Query: 321 GSSIINFYSKVGLL-EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVV----------V 369
            +SI+  Y+K G   E+ E  FS + ERDI++WN+LIA Y   G    V          V
Sbjct: 288 QNSILRMYTKTGGSGEEVETFFSEIEERDIISWNILIAFYSFRGDIAEVAERFNEMRREV 347

Query: 370 ASSI------VDMYAKCERIDNAKQVFNSII---LRDVVLWNTLLAAYADLGRSGEASRL 420
            SSI      V   A C  +     +  S I   L D VL   LLA YA  G    +++L
Sbjct: 348 TSSIESLTLVVSAIANCANLSEGGMLHCSAIKTGLHDTVLMTCLLALYAKCGALEISAQL 407

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
           F  +                                          N ITW++++SG TQ
Sbjct: 408 FRDIP---------------------------------------HRNSITWSSMMSGFTQ 428

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP--- 537
           N    EAI  +Q+ML +G++P+   I+  + A T + +L+ G+A H + IR+    P   
Sbjct: 429 NGFFKEAIELYQQMLASGLQPNHDIISTLVIAYTHLGALQLGKATHAFFIRNLSSWPEED 488

Query: 538 -TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
             P+ TSL++MY +CG+I  A   F+    K++  + +MI G+  HGLA EAL  FK++ 
Sbjct: 489 SAPLETSLLNMYIRCGSISSALICFNRVVVKDVVTWTSMIEGFGTHGLAFEALKFFKSML 548

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           +  + P+S+TF ++L+ACSH+GLV EG E+F  M    +++P + H+ C+V+LL R G L
Sbjct: 549 ESEVQPNSVTFLSLLSACSHSGLVREGCEVFHSMKWGFRIEPDLNHYTCMVDLLGRSGKL 608

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
            EAL VIL +   PD+ I G+LL+      + +L EY +E LL+LEPDN G Y   SN  
Sbjct: 609 KEALTVILKLVTCPDSRIWGALLAASRVHEDKKLGEYAAEKLLELEPDNVGYYTLWSNIE 668

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           A+  RW EV +VR +M E+ L+K PG S I++   +H FV+ D SH + EEI
Sbjct: 669 ASLERWGEVEEVRRVMHERDLKKKPGWSCIEVKGMIHGFVSGDTSHHQVEEI 720


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/667 (31%), Positives = 355/667 (53%), Gaps = 86/667 (12%)

Query: 176 DGVSPDNFV--LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           D  +PD  +    ++L+ C  L  +  G  VH  ++  G D C F+ S L+++Y + G +
Sbjct: 2   DLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCV 61

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           E+AR++FD M  RNV +W +++  Y   G  EE I++FY M  EGV P       +  A 
Sbjct: 62  EDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKAC 121

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           + L     GK  +   +  G E ++ +  SI++ + K G ++ A   F  +  +D+  WN
Sbjct: 122 SELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWN 181

Query: 354 LLIASYVQSGQ------------------------------------------------- 364
           ++++ Y   G+                                                 
Sbjct: 182 IMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKV 241

Query: 365 ----SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA--AYADLGRSGEAS 418
               SD++V +S+VD YAKC  ++ A++ F  I   D+V WN +LA   +   G  G+A+
Sbjct: 242 EELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYG-DGKAA 300

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
             F+Q                        +M+ A  +F ++ +     +++ W ++IS  
Sbjct: 301 LEFFQ------------------------RMHIACSVFSELST----RDVVVWNSIISAC 332

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
            Q+     A+   +EM  + ++ +T T+  AL AC+ +A+LR G+ IH ++IR  L    
Sbjct: 333 AQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCN 392

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            I+ SL+DMY +CG+I +++R+FD+ P ++L  +N MIS Y MHG  ++A+ LF+  +  
Sbjct: 393 FILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTM 452

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           G+ P+ ITFTN+L+ACSH+GL+ EG + F  M +++ + P++E + C+V+LLSR G  +E
Sbjct: 453 GLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 512

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
            L  I  MP +P+A + GSLL  C      +LAEY + +L +LEP + GNYV ++N Y+A
Sbjct: 513 TLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSA 572

Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMH 778
           +GRW + +++R +MKE+G+ K PGCSWI++  +LH FV  D SHP  E+I A +  L   
Sbjct: 573 AGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFD 632

Query: 779 VRLVSKV 785
           ++ +  V
Sbjct: 633 IKEIGYV 639



 Score =  242 bits (618), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 153/540 (28%), Positives = 279/540 (51%), Gaps = 48/540 (8%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           EIY  +LQ C    ++  G Q+HA+++ NG      E++ ++L+  Y +   ++ A R+F
Sbjct: 11  EIYASILQKCRKLYNLRLGFQVHAQLVVNG--VDVCEFLGSRLLEVYCQTGCVEDARRMF 68

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
            ++  +NVFSW AI+ + C +G  E+ +  F  M  +GV PD+FV P V KAC  L    
Sbjct: 69  DKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYR 128

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            G+ V+ Y+L +GF+G   V  S++DM+ KCG ++ AR+ F+ +  ++V  WN M+ GY 
Sbjct: 129 VGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 188

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV-INGMELDN 318
             G  ++A+ VF +M LEGV+P  +++ S +SA  NL  L  G++ H   + +  ++ D 
Sbjct: 189 SKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDL 248

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA--SYVQSGQSDVVVASSIVDM 376
           ++G+S++++Y+K   +E A   F  + + D+V+WN ++A   + Q G        + ++ 
Sbjct: 249 LVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGD-----GKAALEF 303

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           +   +R+  A  VF+ +  RDVV+WN++++A A  GRS  A  L  +M L  +  N ++ 
Sbjct: 304 F---QRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTM 360

Query: 437 NSVI-----LGFLRNGQ-----------------MNEAKDMFLQMQS---------LGVQ 465
            S +     L  LR G+                 +N   DM+ +  S         L  Q
Sbjct: 361 VSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQ 420

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            +L++W  +IS    +  G +A+  FQ+    G+KP+  T T  LSAC+    +  G   
Sbjct: 421 RDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWK- 479

Query: 526 HGYLIRHDLCLPTPI--VTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMH 582
           +  +++ +  +   +     +VD+ ++ G  ++     +  P      V+ +++    +H
Sbjct: 480 YFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIH 539



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 15/233 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+ ++  +   A+DLL EM   N ++        L  C     +  G++IH  I++ G 
Sbjct: 329 ISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCG- 387

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
                 ++   L+  Y +C ++  + R+F  +  +++ SW  +I +    G    A+  F
Sbjct: 388 -LDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLF 446

Query: 171 VEMQEDGVSPDNFVLPNVLKACG-----ALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
            + +  G+ P++    N+L AC        GW  F      Y +    D  V   + ++D
Sbjct: 447 QQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAM----DPAVEQYACMVD 502

Query: 226 MYGKCGDLEEARKVFDGM-IARNVVAWNSMIVG---YVQNGLNEEAIRVFYEM 274
           +  + G   E  +  + M    N   W S++     +    L E A R  +E+
Sbjct: 503 LLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFEL 555


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/764 (30%), Positives = 391/764 (51%), Gaps = 93/764 (12%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR-VKNVFSWAAIIGLN 157
           ++IHA ++  G     +++   KL+  Y+       +  +F R+   KNV+ W +II   
Sbjct: 24  RRIHALVISLG--LDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAF 81

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            + GL  +AL  + +++E  VSPD +  P+V+KAC  L     G  V+  +L +GF+  +
Sbjct: 82  SKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDL 141

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           FV ++L+DMY + G L  AR+VFD M  R++V+WNS+I GY  +G  EEA+ +++E+   
Sbjct: 142 FVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNS 201

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            + P   +V+S+L A  NL  + +G+  H  A+ +G+    V+ + ++  Y K     DA
Sbjct: 202 WIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDA 261

Query: 338 EVVFSRMVERDIVTWNLLIASYVQ----------------SGQSDVVVASSI-------- 373
             VF  M  RD V++N +I  Y++                  + D++  SS+        
Sbjct: 262 RRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLR 321

Query: 374 ---------------------------VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                                      +D+YAKC  +  A+ VFNS+  +D V WN++++
Sbjct: 322 DLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIIS 381

Query: 407 AYADLGRSGEASRLFYQMQL-----------------------------------EGISP 431
            Y   G   EA +LF  M +                                    GI  
Sbjct: 382 GYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICI 441

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           ++   N++I  + + G++ ++  +F  M +     + +TW T+IS   +       +   
Sbjct: 442 DLSVSNALIDMYAKCGEVGDSLKIFSSMGT----GDTVTWNTVISACVRFGDFATGLQVT 497

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
            +M ++ + P   T    L  C  +A+ R G+ IH  L+R        I  +L++MY+KC
Sbjct: 498 TQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKC 557

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G +  + RVF+    +++  +  MI  Y M+G   +AL  F ++++ GI PDS+ F  I+
Sbjct: 558 GCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAII 617

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
            ACSH+GLV+EGL  F  M + +++ P +EH+ CVV+LLSR   + +A   I  MP  PD
Sbjct: 618 YACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPD 677

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
           A I  S+L  C  S + E AE +S  +++L PD+PG  +  SNAYAA  +W++VS +R  
Sbjct: 678 ASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKS 737

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           +K+K + KNPG SWI++G+ +HVF + D S P++E IY +L +L
Sbjct: 738 LKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEIL 781



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 110/501 (21%), Positives = 225/501 (44%), Gaps = 115/501 (22%)

Query: 282 TRVS---VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           TRVS   ++  LS+S+NL+ L   ++ HA+ +  G++  +     +I+ YS       + 
Sbjct: 3   TRVSSPFISRALSSSSNLNEL---RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSL 59

Query: 339 VVFSRMV-ERDIVTWNLLIASYVQSG---------------------------------- 363
            VF R+   +++  WN +I ++ ++G                                  
Sbjct: 60  SVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGL 119

Query: 364 ------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                             +SD+ V +++VDMY++   +  A+QVF+ + +RD+V WN+L+
Sbjct: 120 FDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLI 179

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF-----LRNGQ------------ 448
           + Y+  G   EA  ++++++   I P+  + +SV+  F     ++ GQ            
Sbjct: 180 SGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVN 239

Query: 449 ------------------MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
                               +A+ +F +M       + +++ T+I G  +     E++  
Sbjct: 240 SVVVVNNGLVAMYLKFRRPTDARRVFDEMDV----RDSVSYNTMICGYLKLEMVEESVRM 295

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           F E L+   KP   T++  L AC  +  L   + I+ Y+++    L + +   L+D+YAK
Sbjct: 296 FLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAK 354

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           CG++  A+ VF+    K+   +N++ISGY   G  +EA+ LFK +       D IT+  +
Sbjct: 355 CGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLML 414

Query: 611 LNACSH-------AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
           ++  +         GL + G++   G+  D  V  ++      +++ ++CG + ++L++ 
Sbjct: 415 ISVSTRLADLKFGKGLHSNGIK--SGICIDLSVSNAL------IDMYAKCGEVGDSLKIF 466

Query: 664 LTMPCDPDAHIIGSLLSTCVK 684
            +M    D     +++S CV+
Sbjct: 467 SSMGTG-DTVTWNTVISACVR 486


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/663 (33%), Positives = 357/663 (53%), Gaps = 78/663 (11%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M   G   D+F LP+VLKACG L     G A HG +   GF+  VF+ ++L+ MY +CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 233 LEEARKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE-PTR----- 283
           LEEA  +FD +  R   +V++WNS++  +V++     A+ +F +MTL   E PT      
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           +S+ +IL A  +L A+ + K+ H  A+ NG  LD  +G+++I+ Y+K GL+E+A  VF+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI----ILRDVV 399
           M  +D+V+W                  +++V  Y++      A ++F ++    I  D+V
Sbjct: 181 MEFKDVVSW------------------NAMVAGYSQSGNFKAAFELFKNMRKENIPLDMV 222

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQ------ 448
            W  ++A Y+  G S EA  +F QM   G  PN ++  SV+     LG    G       
Sbjct: 223 TWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYS 282

Query: 449 ---------------------MNEAKDMFLQMQSLGV-----------QPNLITWTTLIS 476
                                 N   DM+ + +S              + N++TWT +I 
Sbjct: 283 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 342

Query: 477 GLTQNSCGNEAILFFQEMLET--GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           G  Q    N+A+  F EM+    G+ P+  TI+C L AC  +A++R G+ IH Y++RH  
Sbjct: 343 GHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQ 402

Query: 535 CLPTP--IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
              +   +   L++MY+KCG++  A+ VFD    K    + +M++GY MHG   EAL +F
Sbjct: 403 YDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIF 462

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
             +++ G  PD ITF  +L ACSH G+V++GL  F  M +D+ + P  EH+   ++LL+R
Sbjct: 463 DKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLAR 522

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G LD+A + +  MP +P A +  +LLS C   +  ELAE+    L+++  +N G+Y  +
Sbjct: 523 FGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLI 582

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           SN YA +GRW +V+++R +MK+ G++K PGCSW+Q  +    F   DRSHP + +IYA L
Sbjct: 583 SNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALL 642

Query: 773 ALL 775
             L
Sbjct: 643 ESL 645



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 222/501 (44%), Gaps = 88/501 (17%)

Query: 35  ESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRD 94
           +S N++ +L    F +++ +  EK   E  D+++ +              +L  C   + 
Sbjct: 91  KSSNAWTAL--DLFSKMTLIVHEKPTNERSDIISIVN-------------ILPACGSLKA 135

Query: 95  MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSW---- 150
           +   +++H   ++NG F   + +V   L+  YAKC  ++ A ++F  +  K+V SW    
Sbjct: 136 VPQTKEVHGNAIRNGTFL--DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 193

Query: 151 -------------------------------AAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
                                           A+I    + G S +AL  F +M   G  
Sbjct: 194 AGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSL 253

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKV----------GFDGCVFVASSLIDMYGK 229
           P+   + +VL AC +LG    G  +H Y LK           G D  + V ++LIDMY K
Sbjct: 254 PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 313

Query: 230 CGDLEEARKVFDG--MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE--GVEPTRVS 285
           C   + AR +FD   +  RNVV W  MI G+ Q G + +A+++F EM  E  GV P   +
Sbjct: 314 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 373

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDN---VLGSSIINFYSKVGLLEDAEVVFS 342
           ++ IL A A+L A+  GKQ HA  V+   + D+    + + +IN YSK G ++ A  VF 
Sbjct: 374 ISCILMACAHLAAIRIGKQIHAY-VLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFD 432

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            M ++  ++W  ++  Y   G+      S  +D++ K  +            + D + + 
Sbjct: 433 SMSQKSAISWTSMMTGYGMHGR-----GSEALDIFDKMRKAG---------FVPDDITFL 478

Query: 403 TLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
            +L A +  G   +    F  M  + G++P    +   I    R G++++A   +  ++ 
Sbjct: 479 VVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKA---WKTVKD 535

Query: 462 LGVQPNLITWTTLISGLTQNS 482
           + ++P  + W  L+S    +S
Sbjct: 536 MPMEPTAVVWVALLSACRVHS 556



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 62  EAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           +A+ L  EM    + + P  Y    +L  C +   +  G+QIHA +L++  + +   +V 
Sbjct: 352 DALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVA 411

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
             L+  Y+KC  +D A  +F  +  K+  SW +++      G   +AL  F +M++ G  
Sbjct: 412 NCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV 471

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYV-LKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           PD+     VL AC   G V  G +    +    G        +  ID+  + G L++A K
Sbjct: 472 PDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWK 531

Query: 239 VFDGM-IARNVVAWNSMIVG---YVQNGLNEEAIRVFYEMTLE 277
               M +    V W +++     +    L E A+    EM  E
Sbjct: 532 TVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAE 574


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 261/783 (33%), Positives = 403/783 (51%), Gaps = 96/783 (12%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           ++ G LLQ C   +++  G++IH   +     F  +  + T+LV  Y+ CD+   +  +F
Sbjct: 94  QLIGLLLQLCGEYKNIEIGRKIH-NFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVF 152

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWV 198
              R KN+F W A++    R  L   A+  FVEM       PDNF LP V+KAC  +  V
Sbjct: 153 NASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDV 212

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
             G AVHG+ LK      VFV ++LI MYGK G +E A KVFD M  RN+V+WNS++   
Sbjct: 213 RLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYAC 272

Query: 259 VQNGLNEEAIRVFYEMTL--EGVEPTRVSVTSILSASANLDALDEGKQAHAVAV------ 310
           ++NG+ EE+  +F  +    EG+ P   ++ +++   A    +  G   H +A+      
Sbjct: 273 LENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCG 332

Query: 311 ---INGMELD--------------------NVLG-SSIINFYSKVGLLEDAEVVFSRMVE 346
              +N   LD                    NV+  +S+I  YSK      A  +  +M  
Sbjct: 333 ELKVNSSLLDMYSKCGYLCEARVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQM 392

Query: 347 RDIVTWNLL--------------------IASY-VQSG--QSDVVVASSIVDMYAKCERI 383
            D V  N +                    I  Y ++ G  QSD +VA++ V  YAKC  +
Sbjct: 393 EDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSL 452

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG- 442
             A+ VF  +  + V  WN L+  +   G   +A  L+  M+  G+ P++ +  S++   
Sbjct: 453 HYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSAC 512

Query: 443 ---------------FLRNG-QMNE------------------AKDMFLQMQSLGVQPNL 468
                           LRNG +++E                  AK  F  M+    + NL
Sbjct: 513 ARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNME----EKNL 568

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           + W T+I+G +QN    +A+  F +ML + I P   +I  AL AC+ V++LR G+ +H +
Sbjct: 569 VCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCF 628

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
            ++  L   + +  SL+DMYAKCG + Q++ +FD    K    +N +I+GY +HG   +A
Sbjct: 629 AVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKA 688

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           + LFK++Q  G  PDS+TF  +L AC+HAGLV EGLE    M S   +KP +EH+ CVV+
Sbjct: 689 IELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVD 748

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           +L R G L+EAL ++  +P  PD+ I  SLLS+C    + ++ E ++  LL+L PD   N
Sbjct: 749 MLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAEN 808

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YV +SN YA  G+W+EV ++R  MKE GL+K+ GCSWI+IG ++  F+  D S  ++ +I
Sbjct: 809 YVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKI 868

Query: 769 YAT 771
             T
Sbjct: 869 QQT 871



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 205/479 (42%), Gaps = 74/479 (15%)

Query: 61  REAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           R+A+DL   M  R   + P+++    LL  C   + +  G++IH  +L+NG  F  +E++
Sbjct: 484 RKALDLYLLM--RGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNG--FELDEFI 539

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
              LV  Y +C  + +A   F  +  KN+  W  +I    +      AL  F +M    +
Sbjct: 540 CISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKI 599

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
            PD   +   L AC  +  +  G+ +H + +K       FV  SLIDMY KCG +E+++ 
Sbjct: 600 WPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQN 659

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +FD +  +  V WN +I GY  +G   +AI +F  M   G  P  V+  ++L+A      
Sbjct: 660 IFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTAC----- 714

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
                  HA  V  G+E    LG     F  K  L   A                     
Sbjct: 715 ------NHAGLVAEGLE---YLGQMQSLFGIKPKLEHYA--------------------- 744

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-DVVLWNTLLAA---YADLGRS 414
                         +VDM  +  R++ A ++ N +  + D  +W++LL++   Y DL   
Sbjct: 745 -------------CVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIG 791

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL-ITWTT 473
            + +    ++  +     ++  N     + R G+ +E + M  +M+ +G+Q +   +W  
Sbjct: 792 EKVANKLLELGPDKAENYVLISNF----YARLGKWDEVRKMRQRMKEIGLQKDAGCSWIE 847

Query: 474 LISGLTQNSCGNEAILFFQEMLET-----------GIKPSTTTITCALSACTDVASLRN 521
           +   +++   G+E++L   ++ +T           G KP T+ +   L     +  LRN
Sbjct: 848 IGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRN 906



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 25/198 (12%)

Query: 485 NEAILFFQEMLETGIKPSTTT----ITCALSACTDVASLRNGRAIHGYL-----IRHDLC 535
           N+A  F Q  L   +  S +     I   L  C +  ++  GR IH ++      ++D+ 
Sbjct: 71  NQAFNFLQSNLNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVV 130

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF-KN 594
           L    +T LV MY+ C + + +  VF+ S  K L ++NA++SGY  + L  +A+ +F + 
Sbjct: 131 L----ITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEM 186

Query: 595 LQQKGIDPDSITFTNILNAC-----SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
           +      PD+ T   ++ AC        G    G  L   + SD  V  ++      + +
Sbjct: 187 ISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNAL------IAM 240

Query: 650 LSRCGNLDEALRVILTMP 667
             + G ++ A++V   MP
Sbjct: 241 YGKFGFVESAVKVFDKMP 258


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/729 (31%), Positives = 373/729 (51%), Gaps = 26/729 (3%)

Query: 44  YKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHA 103
           + S+   IS LSK +   EA+ L  +M        P  +  +L  C     +  G+Q+H 
Sbjct: 213 HSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHG 272

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
            +LK G  F+ + YV   LV  Y     L  A  +F  +  ++  ++  +I    + G  
Sbjct: 273 LVLKLG--FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 330

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
           EKA+  F  M  DG+ PD+  L +++ AC A G +  G+ +H Y  K+GF     +  +L
Sbjct: 331 EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGAL 390

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE---AIRVFYEMTLEGVE 280
           +++Y KC D+E A   F      NVV WN M+V Y   GL ++   + R+F +M +E + 
Sbjct: 391 LNLYAKCADIETALDYFLETEVENVVLWNVMLVAY---GLLDDLRNSFRIFRQMQIEEIV 447

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P + +  SIL     L  L+ G+Q H+  +    +L+  + S +I+ Y+K+G L+ A  +
Sbjct: 448 PNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDI 507

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
             R   +D+V+W  +IA Y Q    D  + +               +Q+ +  I  D V 
Sbjct: 508 LIRFAGKDVVSWTTMIAGYTQYNFDDKALTT--------------FRQMLDRGIRSDEVG 553

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
               ++A A L    E  ++  Q  + G S ++   N+++  + R G++ E+   F Q +
Sbjct: 554 LTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE 613

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
           +     + I W  L+SG  Q+    EA+  F  M   GI  +  T   A+ A ++ A+++
Sbjct: 614 A----GDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMK 669

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            G+ +H  + +      T +  +L+ MYAKCG+I  A++ F    +K    +NA+I+ Y+
Sbjct: 670 QGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 729

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            HG   EAL  F  +    + P+ +T   +L+ACSH GLV++G+  F  M S++ + P  
Sbjct: 730 KHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP 789

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EH+ CVV++L+R G L  A   I  MP  PDA +  +LLS CV     E+ E+ + HLL+
Sbjct: 790 EHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLE 849

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           LEP++   YV LSN YA S +W+     R  MKEKG++K PG SWI++   +H F   D+
Sbjct: 850 LEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 909

Query: 761 SHPKTEEIY 769
           +HP  +EI+
Sbjct: 910 NHPLADEIH 918



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 136/582 (23%), Positives = 236/582 (40%), Gaps = 106/582 (18%)

Query: 173 MQEDGVSPDNFVLPNVLKAC-GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCG 231
           ++  G+ P++  L  +L+ C    G +  GR +H  +LK+G D    ++  L D Y   G
Sbjct: 35  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 94

Query: 232 DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
           DL  A KVFD M  R +  WN MI       L  E   +F  M  E V P   + + +L 
Sbjct: 95  DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 154

Query: 292 A-SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           A      A D  +Q HA  +  G+    V+ + +I+ YS+ G ++ A  VF  +  +D  
Sbjct: 155 ACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHS 214

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMY---------------AKCERID----------- 384
           +W  +I+  +   + +        DMY               + C++I+           
Sbjct: 215 SWVAMISG-LSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGL 273

Query: 385 ---------------------------NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                                      +A+ +F+++  RD V +NTL+   +  G   +A
Sbjct: 274 VLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 333

Query: 418 SRLFYQMQLEGISPNIISWNSVI---------------------LGFLRNGQ-------- 448
             LF +M L+G+ P+  +  S++                     LGF  N +        
Sbjct: 334 MELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 393

Query: 449 ------MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
                 +  A D FL+ +      N++ W  ++           +   F++M    I P+
Sbjct: 394 YAKCADIETALDYFLETEV----ENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 449

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
             T    L  C  +  L  G  IH  +I+ +  L   + + L+DMYAK G +  A  +  
Sbjct: 450 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILI 509

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               K++  +  MI+GY  +    +AL  F+ +  +GI  D +  TN ++AC+    + E
Sbjct: 510 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 569

Query: 623 GLELFV-----GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           G ++       G  SD   + ++      V L SRCG ++E+
Sbjct: 570 GQQIHAQACVSGFSSDLPFQNAL------VTLYSRCGKIEES 605


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 338/584 (57%), Gaps = 29/584 (4%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYG--KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           +H + LK       FV+S L+ +Y   K  DL  AR +FD +  R+++ WN++I  YV+N
Sbjct: 32  LHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVEN 91

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
             + + I +F+E+  E + P   ++  ++   A L  + EGKQ H +A+  G   D  + 
Sbjct: 92  QFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQ 150

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
            S++N YSK G ++ A  VF  M+++D+V WN                  S++D YA+C 
Sbjct: 151 GSLVNMYSKCGEIDCARKVFDGMIDKDVVLWN------------------SLIDGYARCG 192

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            ID A Q+F  +  RD   W  L+   +  G+   A +LF QM       N++SWN++I 
Sbjct: 193 EIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCR----NLVSWNAMIN 248

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
           G++++G  + A ++F QM       +L+TW  +I+G   N    +A+  F  ML+ G +P
Sbjct: 249 GYMKSGDFDSALELFYQMPIW----DLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRP 304

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
           S  T+   LSA + +A L  GR IH Y+ ++   L   + TSL++MYAKCG I  A  VF
Sbjct: 305 SHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVF 364

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
                K++  + A+I G  +HG+A  ALALF  + + G+ P++I F  +LNAC+HAGLV+
Sbjct: 365 RAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVD 424

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           +G + F  M ++++++P++EH+GC+V++L R G+L+EA   I  MP  P+  I  SLL  
Sbjct: 425 DGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGG 484

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
                + ++ EY ++ ++++ P+  G Y+ LSN YAASG W +VS VR++M ++G RK+P
Sbjct: 485 SRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDP 544

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           GCS ++    LH F+  D SHP+T+EIYA ++ +   ++ V  V
Sbjct: 545 GCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHV 588



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 213/446 (47%), Gaps = 70/446 (15%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYA--KCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           +Q+HA  LK   F   + +V ++L+  Y+  K + L  A  +F R++ +++  W  II  
Sbjct: 30  EQLHAFSLKTAIF--NHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKC 87

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
                 S   ++ F E+  + + PDNF LP V+K C  LG V  G+ +HG  LK+GF   
Sbjct: 88  YVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSD 146

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VFV  SL++MY KCG+++ ARKVFDGMI ++VV WNS+I GY + G  + A+++F EM  
Sbjct: 147 VFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM-- 204

Query: 277 EGVEPTRVSVTSILSASANLDALDE-GKQAHAVAVINGMELDNVLG-SSIINFYSKVGLL 334
               P R       S +  +D L + GK   A  + + M   N++  +++IN Y K G  
Sbjct: 205 ----PER----DAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDF 256

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQ---------------------SDVVVASSI 373
           + A  +F +M   D+VTWNL+IA Y  +GQ                     + V V S++
Sbjct: 257 DSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAV 316

Query: 374 -------------------------------VDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                          ++MYAKC  I++A  VF +I  + V  W 
Sbjct: 317 SGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWT 376

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF-LQMQS 461
            ++      G +  A  LF +M   G+ PN I +  V+      G +++ +  F + M  
Sbjct: 377 AIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNE 436

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEA 487
             ++P L  +  L+  L +     EA
Sbjct: 437 YKIEPTLEHYGCLVDILCRAGHLEEA 462



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 192/401 (47%), Gaps = 42/401 (10%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +++GC     +  G+QIH   LK G  F  + +V+  LV  Y+KC  +D A ++F  +  
Sbjct: 118 VIKGCARLGVVQEGKQIHGLALKIG--FGSDVFVQGSLVNMYSKCGEIDCARKVFDGMID 175

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF---VLPNVLKACGALGWVGFG 201
           K+V  W ++I    R G  + AL  F EM E     D F   VL + L  CG    V   
Sbjct: 176 KDVVLWNSLIDGYARCGEIDIALQLFEEMPER----DAFSWTVLVDGLSKCGK---VESA 228

Query: 202 RAVHGYVLKVGFDG--CVFVAS--SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           R +        FD   C  + S  ++I+ Y K GD + A ++F  M   ++V WN MI G
Sbjct: 229 RKL--------FDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAG 280

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           Y  NG   +A+++F+ M   G  P+  ++ S+LSA + L  L +G+  H+    NG ELD
Sbjct: 281 YELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELD 340

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
            +LG+S+I  Y+K G +E A  VF  + ++ +  W  +I      G ++  +A  +    
Sbjct: 341 GILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFL---- 396

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISW 436
                     ++  + +  + +++  +L A    G   +  + F  M  E  I P +  +
Sbjct: 397 ----------EMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHY 446

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
             ++    R G + EAK+    ++++ + PN + W +L+ G
Sbjct: 447 GCLVDILCRAGHLEEAKN---TIENMPISPNKVIWMSLLGG 484



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 141/320 (44%), Gaps = 45/320 (14%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +  LSK  ++  A  L  +M CRN               V    M  G       +K+GD
Sbjct: 216 VDGLSKCGKVESARKLFDQMPCRNL--------------VSWNAMINGY------MKSGD 255

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
           F                     D A  LF ++ + ++ +W  +I      G    A+  F
Sbjct: 256 F---------------------DSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMF 294

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M + G  P +  L +VL A   L  +G GR +H Y+ K GF+    + +SLI+MY KC
Sbjct: 295 FMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKC 354

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E A  VF  +  + V  W ++IVG   +G+   A+ +F EM   G++P  +    +L
Sbjct: 355 GCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVL 414

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLG--SSIINFYSKVGLLEDAEVVFSRM-VER 347
           +A  +   +D+G+Q   + ++N  +++  L     +++   + G LE+A+     M +  
Sbjct: 415 NACNHAGLVDDGRQYFDM-MMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISP 473

Query: 348 DIVTWNLLIASYVQSGQSDV 367
           + V W  L+      G+ D+
Sbjct: 474 NKVIWMSLLGGSRNHGKIDI 493


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/729 (31%), Positives = 373/729 (51%), Gaps = 26/729 (3%)

Query: 44  YKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHA 103
           + S+   IS LSK +   EA+ L  +M        P  +  +L  C     +  G+Q+H 
Sbjct: 253 HSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHG 312

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
            +LK G  F+ + YV   LV  Y     L  A  +F  +  ++  ++  +I    + G  
Sbjct: 313 LVLKLG--FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 370

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
           EKA+  F  M  DG+ PD+  L +++ AC A G +  G+ +H Y  K+GF     +  +L
Sbjct: 371 EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGAL 430

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE---AIRVFYEMTLEGVE 280
           +++Y KC D+E A   F      NVV WN M+V Y   GL ++   + R+F +M +E + 
Sbjct: 431 LNLYAKCADIETALDYFLETEVENVVLWNVMLVAY---GLLDDLRNSFRIFRQMQIEEIV 487

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P + +  SIL     L  L+ G+Q H+  +    +L+  + S +I+ Y+K+G L+ A  +
Sbjct: 488 PNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDI 547

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
             R   +D+V+W  +IA Y Q    D  + +               +Q+ +  I  D V 
Sbjct: 548 LIRFAGKDVVSWTTMIAGYTQYNFDDKALTT--------------FRQMLDRGIRSDEVG 593

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
               ++A A L    E  ++  Q  + G S ++   N+++  + R G++ E+   F Q +
Sbjct: 594 LTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE 653

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
           +     + I W  L+SG  Q+    EA+  F  M   GI  +  T   A+ A ++ A+++
Sbjct: 654 A----GDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMK 709

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            G+ +H  + +      T +  +L+ MYAKCG+I  A++ F    +K    +NA+I+ Y+
Sbjct: 710 QGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 769

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            HG   EAL  F  +    + P+ +T   +L+ACSH GLV++G+  F  M S++ + P  
Sbjct: 770 KHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP 829

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EH+ CVV++L+R G L  A   I  MP  PDA +  +LLS CV     E+ E+ + HLL+
Sbjct: 830 EHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLE 889

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           LEP++   YV LSN YA S +W+     R  MKEKG++K PG SWI++   +H F   D+
Sbjct: 890 LEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 949

Query: 761 SHPKTEEIY 769
           +HP  +EI+
Sbjct: 950 NHPLADEIH 958



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 136/582 (23%), Positives = 236/582 (40%), Gaps = 106/582 (18%)

Query: 173 MQEDGVSPDNFVLPNVLKAC-GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCG 231
           ++  G+ P++  L  +L+ C    G +  GR +H  +LK+G D    ++  L D Y   G
Sbjct: 75  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 134

Query: 232 DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
           DL  A KVFD M  R +  WN MI       L  E   +F  M  E V P   + + +L 
Sbjct: 135 DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 194

Query: 292 A-SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           A      A D  +Q HA  +  G+    V+ + +I+ YS+ G ++ A  VF  +  +D  
Sbjct: 195 ACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHS 254

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMY---------------AKCERID----------- 384
           +W  +I+  +   + +        DMY               + C++I+           
Sbjct: 255 SWVAMISG-LSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGL 313

Query: 385 ---------------------------NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                                      +A+ +F+++  RD V +NTL+   +  G   +A
Sbjct: 314 VLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 373

Query: 418 SRLFYQMQLEGISPNIISWNSVI---------------------LGFLRNGQ-------- 448
             LF +M L+G+ P+  +  S++                     LGF  N +        
Sbjct: 374 MELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 433

Query: 449 ------MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
                 +  A D FL+ +      N++ W  ++           +   F++M    I P+
Sbjct: 434 YAKCADIETALDYFLETEV----ENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 489

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
             T    L  C  +  L  G  IH  +I+ +  L   + + L+DMYAK G +  A  +  
Sbjct: 490 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILI 549

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               K++  +  MI+GY  +    +AL  F+ +  +GI  D +  TN ++AC+    + E
Sbjct: 550 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 609

Query: 623 GLELFV-----GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           G ++       G  SD   + ++      V L SRCG ++E+
Sbjct: 610 GQQIHAQACVSGFSSDLPFQNAL------VTLYSRCGKIEES 645


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 231/666 (34%), Positives = 349/666 (52%), Gaps = 72/666 (10%)

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           SP   +L + L++  A G     R VH  +L   F   +F+ + LID+YGKC  L++ARK
Sbjct: 16  SPFAKLLDSCLRSRSARG----TRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARK 71

Query: 239 VFDGMIARNVV-------------------------------AWNSMIVGYVQNGLNEEA 267
           +FD M  RN                                 +WNSM+ G+ Q+   EE+
Sbjct: 72  LFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEES 131

Query: 268 IRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327
           +  F +M  E       S  S LSA A L  L+ G Q HA+   +    D  +GS++I+ 
Sbjct: 132 LEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDM 191

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVA 370
           YSK G +  AE VFS M+ER++VTWN LI  Y Q+G                 + D V  
Sbjct: 192 YSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTL 251

Query: 371 SSIVDMYAKCERIDNAKQVFNSII-----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           +S+V   A    +    Q+   ++       D+VL N L+  YA   +  EA R+F +M 
Sbjct: 252 ASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMS 311

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
           +     N++S  S++ G+ R   +  A+ MF +M     Q N+++W  LI+G TQN    
Sbjct: 312 IR----NVVSETSMVSGYARAASVKAARFMFSKM----TQRNVVSWNALIAGYTQNGENE 363

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP------ 539
           EA+  F+ +    I P+  T    LSAC ++A L  GR  H ++++      +       
Sbjct: 364 EALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIF 423

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           +  SL+DMY KCG+I    RVF+    ++   +NA+I GYA +G   EAL +F+ +   G
Sbjct: 424 VGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCG 483

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
             PD +T   +L ACSHAGLV EG   F  M  +H + P  +H+ C+V+LL R G L+EA
Sbjct: 484 EKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEA 542

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
             +I  MP +PDA + GSLL+ C      E+ ++ +E LL+++P N G YV LSN YA  
Sbjct: 543 KNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAEL 602

Query: 720 GRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           GRW +V +VR +M+++G+ K PGCSWI++   +HVF+  D+SHP  ++IY+ L +L   +
Sbjct: 603 GRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQM 662

Query: 780 RLVSKV 785
           + V  +
Sbjct: 663 KRVGYI 668



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 166/576 (28%), Positives = 270/576 (46%), Gaps = 98/576 (17%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           + +LL  C+  R     + +HARIL     F+   +++ +L+  Y KCD LD A +LF R
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQ--FSMEIFIQNRLIDVYGKCDCLDDARKLFDR 75

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKA--LIG-----------------------------F 170
           +  +N F+W ++I +  + G  ++A  L G                             F
Sbjct: 76  MPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYF 135

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           V+M  +    + +   + L AC  L  +  G  VH  V K  +   V++ S+LIDMY KC
Sbjct: 136 VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKC 195

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +  A +VF GMI RN+V WNS+I  Y QNG   EA+ VF  M   G+EP  V++ S++
Sbjct: 196 GSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVV 255

Query: 291 SASANLDALDEGKQAHA-VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           SA A+L AL EG Q HA V   N    D VLG+++++ Y+K   + +A  VF RM  R++
Sbjct: 256 SACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNV 315

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
           V+                   +S+V  YA+   +  A+ +F+ +  R+VV WN L+A Y 
Sbjct: 316 VS------------------ETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYT 357

Query: 410 DLGRSGEASRLFYQMQLEGISP-------------------------------------- 431
             G + EA RLF  ++ E I P                                      
Sbjct: 358 QNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSG 417

Query: 432 ---NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
              +I   NS+I  +++ G + +   +F +M+    + + ++W  +I G  QN  G EA+
Sbjct: 418 AESDIFVGNSLIDMYMKCGSIEDGSRVFEKMK----ERDCVSWNAIIVGYAQNGYGAEAL 473

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
             F++ML  G KP   T+   L AC+    +  GR     +  H L       T +VD+ 
Sbjct: 474 QIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLL 533

Query: 549 AKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHG 583
            + G +++AK + +  P + +  V+ ++++   +HG
Sbjct: 534 GRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHG 569



 Score =  209 bits (533), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 230/474 (48%), Gaps = 65/474 (13%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +S  ++  +  E+++   +M   +F +    +G  L  C    D+  G Q+HA +
Sbjct: 114 SWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALV 173

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K+   ++ + Y+ + L+  Y+KC ++  A  +F  +  +N+ +W ++I    + G + +
Sbjct: 174 SKSR--YSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASE 231

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVFVASSLI 224
           AL  FV M + G+ PD   L +V+ AC +L  +  G  +H  V+K   F   + + ++L+
Sbjct: 232 ALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALV 291

Query: 225 DMYGKCGDLEEARKVFD-------------------------------GMIARNVVAWNS 253
           DMY KC  + EAR+VFD                                M  RNVV+WN+
Sbjct: 292 DMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNA 351

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           +I GY QNG NEEA+R+F  +  E + PT  +  ++LSA ANL  L  G+QAH   +  G
Sbjct: 352 LIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQG 411

Query: 314 MEL------DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
            E       D  +G+S+I+ Y K G +ED   VF +M ERD V+WN +I  Y Q+G    
Sbjct: 412 FEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYG-- 469

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIIL----RDVVLWNTLLAAYADLGRSGEASRLFYQ 423
                             A Q+F  +++     D V    +L A +  G   E    F+ 
Sbjct: 470 ----------------AEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFS 513

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
           M+  G+ P    +  ++    R G +NEAK++   ++++ V P+ + W +L++ 
Sbjct: 514 MEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNL---IEAMPVNPDAVVWGSLLAA 564



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P+++     L +C    S R  R +H  ++     +   I   L+D+Y KC  +  A+++
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           FD  P +    +N++IS     G   EA  LF ++ +    PD  ++ ++++  +     
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPE----PDQCSWNSMVSGFAQHDRF 128

Query: 621 NEGLELFVGM 630
            E LE FV M
Sbjct: 129 EESLEYFVKM 138


>gi|297810955|ref|XP_002873361.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319198|gb|EFH49620.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 849

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 235/732 (32%), Positives = 397/732 (54%), Gaps = 45/732 (6%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD-ALDVASRLFC 140
           +  LL  CV   D Y G+ +H+ I+K G    ++  V   LV  YAK    +  A   F 
Sbjct: 125 FAILLPVCVRLGDSYNGKSMHSYIIKTG--LEKDTLVGNALVSMYAKFGYIIPDAFTAFD 182

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW-VG 199
            +  K+V SW AII       +   A   F  M ++   P+   + NVL  C ++G  + 
Sbjct: 183 DIADKDVVSWNAIIAGFSENKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMGKNIA 242

Query: 200 F--GRAVHGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
           +  GR +H YV++  +    VFV +SL+  Y + G +EEA  +F  M ++++V+WN +I 
Sbjct: 243 YRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIA 302

Query: 257 GYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
           GY  N    +A+++F+ +  +G V    V++ SIL   A L  L  GK+ H+  + +   
Sbjct: 303 GYASNHEWLKALQLFHNLVQKGDVSLDSVTILSILPVCAQLTDLTCGKEIHSYILRHSYL 362

Query: 316 L-DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS--------- 365
           L D  +G+++I+FY++ G    A   FS M  +DI++WN ++ ++  S +          
Sbjct: 363 LEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDIISWNAILDAFADSPKQFQFLNLLHH 422

Query: 366 --------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV-------LWNTLLAAYAD 410
                   D V   S++      + I   K+V    +   ++       L N LL AYA 
Sbjct: 423 LFNEAITLDSVTILSLLKFCTNVQGIGKVKEVHGYSVKAGLLHNEEEPKLGNALLDAYAK 482

Query: 411 LGRSGEASRLFYQMQLEGISP--NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
            G    A ++F     +G+S    ++++NS++ G++ +G  ++A+ +F +M +     +L
Sbjct: 483 CGNVEYAHKIF-----QGLSERRTLVTYNSLLSGYVNSGSHDDAQMLFSEMST----TDL 533

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
            TW+ ++    ++   NEAI  F+E+   G++P+T TI   L  C  +ASL   R  HGY
Sbjct: 534 TTWSLMVRIYAESCFPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGY 593

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +IR  L     +  +L+D+YAKCG++  A  VF     ++L ++ AM++GYA+HG   EA
Sbjct: 594 IIRGRLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEA 652

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L +F ++    I PD +  T +L AC HAGL+ +GL+++  + + H +KP+ME + C V+
Sbjct: 653 LMIFSHMIDSNIKPDHVFITTLLTACCHAGLIQDGLQIYDSIRAVHGMKPTMEQYACAVD 712

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL+R G LD+A   I  MP +P+A+I G+LL  C   N  +L   ++ HLLQ E D+ GN
Sbjct: 713 LLARGGRLDDAYSFITQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGN 772

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           +V +SN YAA  +W  V ++R++MK+K ++K  GCSW+++  +  VFV+ D SHP+ + I
Sbjct: 773 HVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGKRDVFVSGDCSHPRRDSI 832

Query: 769 YATLALLGMHVR 780
           +  +  L + ++
Sbjct: 833 FDLVNALYLQMK 844



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 161/658 (24%), Positives = 294/658 (44%), Gaps = 118/658 (17%)

Query: 75  FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV 134
           F     ++ ++++ C    ++ +G+ +H  + K G        V   ++  YAKC  +D 
Sbjct: 17  FGTDHRVFLDVVKACASVSELTSGRALHGCVFKLGHIACTE--VSKSVLNMYAKCRRMDD 74

Query: 135 ASRLFCRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQ-EDGVSPDNFVLPNVLKAC 192
             ++F ++   +   W  ++ GL+   G   + +  F  M   D   P +     +L  C
Sbjct: 75  CQKMFRQMDSVDPVVWNIVLTGLSVSCG--RETMRFFKAMHFADEPKPSSVTFAILLPVC 132

Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD-LEEARKVFDGMIARNVVAW 251
             LG    G+++H Y++K G +    V ++L+ MY K G  + +A   FD +  ++VV+W
Sbjct: 133 VRLGDSYNGKSMHSYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVSW 192

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD---ALDEGKQAHAV 308
           N++I G+ +N +  +A R F  M  E  EP   ++ ++L   A++    A   G+Q H+ 
Sbjct: 193 NAIIAGFSENKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMGKNIAYRSGRQIHSY 252

Query: 309 AVING-MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY-------- 359
            V    ++    + +S+++FY +VG +E+A  +F+RM  +D+V+WN++IA Y        
Sbjct: 253 VVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNHEWLK 312

Query: 360 --------VQSGQS--DVVVASSIVDMYAKCERIDNAKQVF-----NSIILRDVVLWNTL 404
                   VQ G    D V   SI+ + A+   +   K++      +S +L D  + N L
Sbjct: 313 ALQLFHNLVQKGDVSLDSVTILSILPVCAQLTDLTCGKEIHSYILRHSYLLEDTSVGNAL 372

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           ++ YA  G +  A   F  M ++    +IISWN+++  F          D   Q Q L +
Sbjct: 373 ISFYARFGDTSAAYWAFSLMSMK----DIISWNAILDAF---------ADSPKQFQFLNL 419

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
             +L                NEAI              + TI   L  CT+V  +   + 
Sbjct: 420 LHHLF---------------NEAITL-----------DSVTILSLLKFCTNVQGIGKVKE 453

Query: 525 IHGYLIRHDLCL---PTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYA 580
           +HGY ++  L        +  +L+D YAKCGN+  A ++F  +S  + L  YN+++SGY 
Sbjct: 454 VHGYSVKAGLLHNEEEPKLGNALLDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLLSGYV 513

Query: 581 MHG-------------------------------LAVEALALFKNLQQKGIDPDSITFTN 609
             G                                  EA+ +F+ +Q +G+ P+++T  N
Sbjct: 514 NSGSHDDAQMLFSEMSTTDLTTWSLMVRIYAESCFPNEAIGVFREIQARGMRPNTVTIMN 573

Query: 610 ILNACSHAG---LVNEGLELFV-GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
           +L  C+      LV +     + G   D ++K      G ++++ ++CG+L  A  V 
Sbjct: 574 LLPVCAQLASLHLVRQCHGYIIRGRLGDIRLK------GTLLDVYAKCGSLKHAYSVF 625



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 144/578 (24%), Positives = 275/578 (47%), Gaps = 40/578 (6%)

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G   D+ V  +V+KAC ++  +  GRA+HG V K+G   C  V+ S+++MY KC  +++ 
Sbjct: 16  GFGTDHRVFLDVVKACASVSELTSGRALHGCVFKLGHIACTEVSKSVLNMYAKCRRMDDC 75

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL-EGVEPTRVSVTSILSASAN 295
           +K+F  M + + V WN ++ G +      E +R F  M   +  +P+ V+   +L     
Sbjct: 76  QKMFRQMDSVDPVVWNIVLTG-LSVSCGRETMRFFKAMHFADEPKPSSVTFAILLPVCVR 134

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG-LLEDAEVVFSRMVERDIVTWNL 354
           L     GK  H+  +  G+E D ++G+++++ Y+K G ++ DA   F  + ++D+V+WN 
Sbjct: 135 LGDSYNGKSMHSYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVSWNA 194

Query: 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG-- 412
           +IA + ++        S  + +    E   N   + N            +L   A +G  
Sbjct: 195 IIAGFSENKMMADAFRSFCLMLKEPTE--PNYATIAN------------VLPVCASMGKN 240

Query: 413 ---RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
              RSG      Y +Q   +  ++   NS++  +LR G++ EA  +F +M S     +L+
Sbjct: 241 IAYRSGRQIH-SYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGS----KDLV 295

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGY 528
           +W  +I+G   N    +A+  F  +++ G +   + TI   L  C  +  L  G+ IH Y
Sbjct: 296 SWNVVIAGYASNHEWLKALQLFHNLVQKGDVSLDSVTILSILPVCAQLTDLTCGKEIHSY 355

Query: 529 LIRHDLCLP-TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
           ++RH   L  T +  +L+  YA+ G+   A   F +   K++  +NA++  +A      +
Sbjct: 356 ILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDIISWNAILDAFADSPKQFQ 415

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHA---GLVNE--GLELFVGMFSDHQVKPSMEH 642
            L L  +L  + I  DS+T  ++L  C++    G V E  G  +  G+  + + +P + +
Sbjct: 416 FLNLLHHLFNEAITLDSVTILSLLKFCTNVQGIGKVKEVHGYSVKAGLLHNEE-EPKLGN 474

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
              +++  ++CGN++ A ++   +          SLLS  V S   + A+ +     ++ 
Sbjct: 475 --ALLDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLLSGYVNSGSHDDAQML---FSEMS 529

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
             +   +  +   YA S   NE   V   ++ +G+R N
Sbjct: 530 TTDLTTWSLMVRIYAESCFPNEAIGVFREIQARGMRPN 567



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 21/204 (10%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKN--GDFFARNEYVE 119
           EA+ +  E++ R  +        LL  C     ++  +Q H  I++   GD       ++
Sbjct: 551 EAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGRLGDI-----RLK 605

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
             L+  YAKC +L  A  +F     +++  + A++      G  ++AL+ F  M +  + 
Sbjct: 606 GTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIFSHMIDSNIK 665

Query: 180 PDNFVLPNVLKACGALGWVGFG-------RAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           PD+  +  +L AC   G +  G       RAVHG    +    C       +D+  + G 
Sbjct: 666 PDHVFITTLLTACCHAGLIQDGLQIYDSIRAVHGMKPTMEQYACA------VDLLARGGR 719

Query: 233 LEEARKVFDGM-IARNVVAWNSMI 255
           L++A      M +  N   W +++
Sbjct: 720 LDDAYSFITQMPVEPNANIWGTLL 743


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/690 (32%), Positives = 357/690 (51%), Gaps = 92/690 (13%)

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
            PD      +L+ C +   V  GR VH +V   GF+    V   LI MY +CG + EA++
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VF+ +  ++V AW  MI  Y Q G  + A+ +FY+M  E V PT+V+  +IL+A A+ ++
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           L +G + H   +  G E D  +G+++IN Y+K G +  A   F R+  RD+V+W  +IA+
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 359 YVQSGQ----------------------------------------------------SD 366
            VQ  Q                                                    SD
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESD 240

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
           V V +S V+M+     + +A+++F  ++ RDVV WN ++  Y      GEA RLF ++Q 
Sbjct: 241 VRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQ 300

Query: 427 EGISPNIISW---------------NSVI------LGFLRNGQM--------------NE 451
           +G+  N I++                 VI       G+ R+  +               +
Sbjct: 301 DGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQ 360

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A  +F+ M S     ++ITWT +     QN    EA+  FQEM   G +P++ T+   L 
Sbjct: 361 AWKIFVDMGS----KDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLD 416

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
            C  +A+L+ GR IH ++I +   +   + T+L++MY KCG + +A  VF+    +++ V
Sbjct: 417 TCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILV 476

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           +N+M+  YA HG   E L LF  +Q  G+  D+++F ++L+A SH+G V +G + FV M 
Sbjct: 477 WNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAML 536

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP-CDPDAHIIGSLLSTCVKSNETEL 690
            D  + P+ E +GCVV+LL R G + EA+ ++L +  C PD  +  +LL  C   N+T+ 
Sbjct: 537 QDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQ 596

Query: 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGE 750
           A+  +E +L+ +P + G YV LSN YAA+G W+ V+++R +M+ +G++K PG S I+I  
Sbjct: 597 AKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILN 656

Query: 751 ELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            +H F+  DRSHP+   IYA L +L   +R
Sbjct: 657 RVHEFLEGDRSHPRRHPIYAELDVLNSEMR 686


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/686 (30%), Positives = 353/686 (51%), Gaps = 86/686 (12%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D   L ++LK C    ++  G+ +H  ++ +G    + +  SLI++Y  C   + A+ VF
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61

Query: 241 DGMI-ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT-LEGVEPTRVSVTSILSASANLDA 298
             +    ++  WN ++    +N +  E + VF+ +     ++P   +  S+L A + L  
Sbjct: 62  QTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGR 121

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           +  GK  H   + +G  +D V+ SS +  Y+K  + EDA  +F  M ERD+ +WN +I+ 
Sbjct: 122 VGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISC 181

Query: 359 YVQSGQS----------------------------------------------------D 366
           Y Q GQ                                                     D
Sbjct: 182 YYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALD 241

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
             V+S++VDMY KC  ++ AK+VF  I  ++VV WN+++A Y+  G S     LF +M  
Sbjct: 242 GFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDE 301

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAK----------------------DMFLQMQSLGV 464
           EGI P + + +S+++   R+  +   K                      D++ +  ++G 
Sbjct: 302 EGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGS 361

Query: 465 ---------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
                    + N+++W  +ISG  +     EA++ F +M + G+KP   T T  L AC+ 
Sbjct: 362 AENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQ 421

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +A L  G+ IH ++I   L +   ++ +L+DMYAKCG + +A  +F+  P ++   + +M
Sbjct: 422 LAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSM 481

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I+ Y  HG A EAL LF+ +QQ    PD +TF  IL+ACSHAGLV+EG   F  M +++ 
Sbjct: 482 IAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYG 541

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMP-CDPDAHIIGSLLSTCVKSNETELAEYI 694
            KP++EH+ C+++LL R G L EA  ++   P    D  ++ +L S C    + +L E I
Sbjct: 542 FKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQI 601

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
              L++ +PD+P  Y+ LSN YA+  +W+EV +VR  +KE GL+KNPGCSWI++G+ +H 
Sbjct: 602 GRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHP 661

Query: 755 FVACDRSHPKTEEIYATLALLGMHVR 780
           FV  D+SHP+ + IY  +++L  HV 
Sbjct: 662 FVVEDKSHPQADMIYECMSILASHVE 687



 Score =  231 bits (590), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 160/532 (30%), Positives = 258/532 (48%), Gaps = 58/532 (10%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  +L+ C     +  G+ +H  ++K+G  FA +  V +  V  YAKC+  + A +LF  
Sbjct: 109 YPSVLKACSGLGRVGYGKMVHTHVIKSG--FAMDVVVMSSAVGMYAKCNVFEDAIKLFDE 166

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  ++V SW  +I    + G  EKAL  F EM+  G  PD+  L  V+ +C  L  +  G
Sbjct: 167 MPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERG 226

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H  +++ GF    FV+S+L+DMYGKCG LE A++VF+ +  +NVV+WNSMI GY   
Sbjct: 227 KEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLK 286

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G ++  I +F  M  EG+ PT  +++SIL A +    L  GK  H   + N +E D  + 
Sbjct: 287 GDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVN 346

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------Q 364
           SS+I+ Y K G +  AE VF  M + ++V+WN++I+ YV+ G                 +
Sbjct: 347 SSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVK 406

Query: 365 SDVVVASSI-----------------------------------VDMYAKCERIDNAKQV 389
            D +  +S+                                   +DMYAKC  +D A  +
Sbjct: 407 PDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHI 466

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           FN +  RD V W +++AAY   G++ EA +LF +MQ     P+ +++ +++      G +
Sbjct: 467 FNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLV 526

Query: 450 NEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           +E    F QM    G +P +  ++ LI  L +     EA    Q   +  I+     ++ 
Sbjct: 527 DEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPD--IREDVGLLST 584

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
             SAC     L  G  I   LI  D   P+  +  L +MYA      + ++V
Sbjct: 585 LFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYII-LSNMYASVKKWDEVRKV 635



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/412 (30%), Positives = 223/412 (54%), Gaps = 17/412 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+ + IS   ++ Q  +A++L  EMK   F+        ++  C    D+  G++IH  +
Sbjct: 174 SWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMEL 233

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +++G  FA + +V + LV  Y KC  L++A  +F +++ KNV SW ++I      G S+ 
Sbjct: 234 VRSG--FALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKS 291

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
            +  F  M E+G+ P    L ++L AC     +  G+ +HGY+++   +  +FV SSLID
Sbjct: 292 CIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLID 351

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y KCG++  A  VF  M   NVV+WN MI GYV+ G   EA+ +F +M   GV+P  ++
Sbjct: 352 LYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAIT 411

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
            TS+L A + L  L++GK+ H   + + +E++ V+  ++++ Y+K G +++A  +F+++ 
Sbjct: 412 FTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP 471

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           ERD V+W  +IA+Y   GQ     A   + ++ K ++ D            D V +  +L
Sbjct: 472 ERDFVSWTSMIAAYGSHGQ-----AFEALKLFEKMQQSDAKP---------DKVTFLAIL 517

Query: 406 AAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMF 456
           +A +  G   E    F QM  E G  P +  ++ +I    R G++ EA ++ 
Sbjct: 518 SACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEIL 569


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 233/808 (28%), Positives = 396/808 (49%), Gaps = 116/808 (14%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  +LQ C   + +  G+Q HA+++     F    YV   LV FY K   ++ A ++F R
Sbjct: 9   FSHILQKCSNLKALNPGKQAHAQMIVTS--FVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 142 LRVKNVFSWAAIIG-----------------------------LNCRV--GLSEKALIGF 170
           +  ++V SW  +I                              L+C +  G++ K++  F
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           V M+   +  D      VLKAC  +   G G  VH   +++GF+  V   S+L+DMY KC
Sbjct: 127 VRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             L+ A ++F  M  RN+V W+++I GYVQN    E +++F +M   G+  ++ +  S+ 
Sbjct: 187 KKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            + A L A   G Q H  A+ +    D+++G++ ++ Y+K   + DA  VF+ +      
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQ 306

Query: 351 TWNLLIASYVQSGQS--------------------------------------------- 365
           ++N +I  Y +  Q                                              
Sbjct: 307 SYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLA 366

Query: 366 -------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                  ++ VA++I+DMY KC  +  A  +F+ +  RD V WN ++AA+       +  
Sbjct: 367 VKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTL 426

Query: 419 RLFYQMQLEGISPNIISWNSVI----------LGFLRNGQMNEAK------------DMF 456
            LF  M    + P+  ++ SV+           G   +G++ ++             DM+
Sbjct: 427 SLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMY 486

Query: 457 ----LQMQSLGVQPNL-----ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
               + M++  +   L     ++W ++ISG +       A  +F +MLE G+ P   T  
Sbjct: 487 GKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYA 546

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
             L  C ++A++  G+ IH  +++ +L     I ++LVDMY+KCGN+  ++ +F+ +P +
Sbjct: 547 TVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKR 606

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           +   ++AMI  YA HG   +A+ LF+ +Q   + P+   F ++L AC+H G V++GL  F
Sbjct: 607 DYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYF 666

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             M S + + P MEH+ C+V+LL R   ++EAL++I +M  + D  I  +LLS C     
Sbjct: 667 QIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGN 726

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
            E+AE     LLQL+P +   YV L+N YA  G W EV+++R IMK   L+K PGCSWI+
Sbjct: 727 VEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIE 786

Query: 748 IGEELHVFVACDRSHPKTEEIYATLALL 775
           + +E+H F+  D++HP++EEIY    LL
Sbjct: 787 VRDEVHTFLVGDKAHPRSEEIYEQTHLL 814



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 140/608 (23%), Positives = 263/608 (43%), Gaps = 133/608 (21%)

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
           F   ++L+ C  L  +  G+  H  ++   F   ++VA+ L+  Y K  ++  A KVFD 
Sbjct: 7   FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 243 MIARNVVAWNSMIVGYVQ-------------------------------NGLNEEAIRVF 271
           M  R+V++WN+MI GY +                               NG+N ++I +F
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
             M    +     + + +L A + ++    G Q H +A+  G E D V GS++++ YSK 
Sbjct: 127 VRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ--------------------------- 364
             L+ A  +F  M ER++V W+ +IA YVQ+ +                           
Sbjct: 187 KKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 365 -------------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
                                     D ++ ++ +DMYAKC+R+ +A +VFN++      
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQ 306

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQ------------------------LEGISP---- 431
            +N ++  YA   +  +A  +F  +Q                        LEGI      
Sbjct: 307 SYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLA 366

Query: 432 -------NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
                  NI   N+++  + + G + EA  +F  M+    + + ++W  +I+   QN   
Sbjct: 367 VKCGLGFNICVANTILDMYGKCGALVEACTIFDDME----RRDAVSWNAIIAAHEQNEEI 422

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
            + +  F  ML + ++P   T    + AC    +L  G  IHG +++  + L   + ++L
Sbjct: 423 VKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSAL 482

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           VDMY KCG + +A+++ D    K    +N++ISG++    +  A   F  + + G+ PD+
Sbjct: 483 VDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDN 542

Query: 605 ITFTNILNACSHAGLVNEGLE-----LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
            T+  +L+ C++   +  G +     L + + SD  +  ++      V++ S+CGN+ ++
Sbjct: 543 FTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTL------VDMYSKCGNMQDS 596

Query: 660 LRVILTMP 667
             +    P
Sbjct: 597 RLMFEKTP 604



 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 220/465 (47%), Gaps = 62/465 (13%)

Query: 279 VEPTR-VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           + PT+  + + IL   +NL AL+ GKQAHA  ++        + + ++ FY K   +  A
Sbjct: 1   MNPTKKFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYA 60

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
             VF RM  RD+++WN +I  Y + G                   +  A+ +F+++  RD
Sbjct: 61  FKVFDRMPHRDVISWNTMIFGYAEIGN------------------MGFAQSLFDTMPERD 102

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------------- 440
           VV WN+LL+ Y   G + ++  +F +M+   I  +  +++ V+                 
Sbjct: 103 VVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHC 162

Query: 441 ----LGFLRNGQMNEA-KDMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNE 486
               +GF  +     A  DM+ + + L           + NL+ W+ +I+G  QN    E
Sbjct: 163 LAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIE 222

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
            +  F++ML+ G+  S +T      +C  +++ + G  +HG+ ++ D    + I T+ +D
Sbjct: 223 GLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLD 282

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MYAKC  +  A +VF+  P+     YNA+I GYA     ++AL +F++LQ+  +  D I+
Sbjct: 283 MYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEIS 342

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN----LLSRCGNLDEALRV 662
            +  L ACS      EG++L  G+     VK  +    CV N    +  +CG L EA  +
Sbjct: 343 LSGALTACSVIKGHLEGIQLH-GL----AVKCGLGFNICVANTILDMYGKCGALVEACTI 397

Query: 663 ILTMPCDPDAHIIGSLLSTCVKSNE--TELAEYISEHLLQLEPDN 705
              M    DA    ++++   ++ E    L+ ++S     +EPD+
Sbjct: 398 FDDME-RRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDD 441


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/788 (32%), Positives = 397/788 (50%), Gaps = 92/788 (11%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  LL+ C +  ++  G+ IH+ I+  G FF  + Y+ T L+ FY KC +   A ++F +
Sbjct: 52  YPSLLKACGFLSNLQYGKTIHSTIITKG-FFYSDPYITTSLINFYFKCGSFGNAVKVFDK 110

Query: 142 L-----RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
           L       ++V  W +I+    R G  ++ +  F  MQ  GV PD + L  +L A  + G
Sbjct: 111 LPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGA--SDG 168

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI 255
            +G+ + +HGY ++  F G  F+ S LI MY  CG   +A ++F  +  + NVVAWN MI
Sbjct: 169 HLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMI 228

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            G+ +NGL E ++ V+     E V+    S TS LSA    + +  G Q H   V  G E
Sbjct: 229 GGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFE 288

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------ 363
            D  + +S++  YSK  L+EDAE VF ++  +    WN +I++YV +G            
Sbjct: 289 NDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQM 348

Query: 364 ----------------------------------------QSDVVVASSIVDMYAKCERI 383
                                                   QS+V + S+++ MY+KC   
Sbjct: 349 KVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNS 408

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI--- 440
           D+A  +FN+I  RDVV W ++++ +    +  EA   +  M + G  P+     SV+   
Sbjct: 409 DDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSAC 468

Query: 441 -------LGFLRNG---QMNEAKDMFL-----QMQSLGVQP-------------NLITWT 472
                  LG   +G   +    +D+F+      M S    P             NL+ W 
Sbjct: 469 TGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWN 528

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           ++IS   +N   + +I  F +M + G+ P + +IT  L + + VA LR G+A+HGYLIR 
Sbjct: 529 SIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQ 588

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
            +     +  +L+DMY KCG +  A+ +F       L  +N MI+G   HG  ++A++LF
Sbjct: 589 RIPSDLQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLF 648

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
             ++  GI PD ITF ++L +C+H G + EGL+LF  M  +H ++P MEH+  +V+LL R
Sbjct: 649 DEMRSFGIAPDDITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGR 708

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G LD+A   +  +P +PD  I  SLL +C   +  EL +  +  LL +EP    NYV L
Sbjct: 709 AGRLDDAYAFVKNLPIEPDRSIWLSLLCSCRVHHNVELGKLAAHKLLDIEPSRGSNYVQL 768

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
            N Y  +   +  + +R  MKEKGL+K PGCSWI++G  + VF + D S P+T EIY  L
Sbjct: 769 LNLYGENELQDRAANLRASMKEKGLKKTPGCSWIEVGNSIDVFFSGDSSSPRTIEIYDLL 828

Query: 773 ALLGMHVR 780
             L  ++R
Sbjct: 829 NSLRRNMR 836



 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 151/574 (26%), Positives = 266/574 (46%), Gaps = 93/574 (16%)

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKVFD 241
           F  P++LKACG L  + +G+ +H  ++  GF     ++ +SLI+ Y KCG    A KVFD
Sbjct: 50  FTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFD 109

Query: 242 GM-----IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
            +       ++V  WNS++ GY + G  +E I  F  M L GV P   S+  +L AS   
Sbjct: 110 KLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASDG- 168

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER-DIVTWNLL 355
             L   KQ H  +V      D  L S +I  Y   G   DA  +F  + ++ ++V WN++
Sbjct: 169 -HLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVM 227

Query: 356 IASYVQSG---------------------------------------------------- 363
           I  + ++G                                                    
Sbjct: 228 IGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGF 287

Query: 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
           ++D  V +S++ MY+KC+ +++A+ VF+ + ++   LWN +++AY   GRS +  +++ Q
Sbjct: 288 ENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQ 347

Query: 424 MQLEGISPNIISWNSV-----ILGFLRNGQMNEAKDMFLQMQS-LGVQPNLIT------- 470
           M++  I P+ ++  +V     ++G    G++  A+ +   +QS + +Q  L+T       
Sbjct: 348 MKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGN 407

Query: 471 ------------------WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
                             W ++ISG  QN    EA+ F+  M   G KP +  +   +SA
Sbjct: 408 SDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSA 467

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           CT + ++  G  IHG  I+  L     + +SLVDMY+K      +  VF   P K L  +
Sbjct: 468 CTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAW 527

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
           N++IS Y  +GL   +++LF  + Q G+ PDS++ T++L + S   ++ +G  +  G   
Sbjct: 528 NSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVH-GYLI 586

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
             ++   ++    ++++  +CG L  A  +   M
Sbjct: 587 RQRIPSDLQLENALIDMYIKCGFLKYAQHIFQNM 620



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 162/310 (52%), Gaps = 4/310 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS   + ++  EA++    M     +   +I   ++  C   +++  G  IH   +K+G 
Sbjct: 430 ISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSG- 488

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
              ++ +V + LV  Y+K +   ++  +F  + +KN+ +W +II   CR GL + ++  F
Sbjct: 489 -LEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLF 547

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M + G+ PD+  + +VL +  ++  +  G+AVHGY+++      + + ++LIDMY KC
Sbjct: 548 SQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIKC 607

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L+ A+ +F  M+  N+V WN MI G   +G   +A+ +F EM   G+ P  ++  S+L
Sbjct: 608 GFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISLL 667

Query: 291 SASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERD 348
           ++  +   ++EG K    + V +G+E       +I++   + G L+DA      + +E D
Sbjct: 668 TSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPD 727

Query: 349 IVTWNLLIAS 358
              W  L+ S
Sbjct: 728 RSIWLSLLCS 737


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  387 bits (995), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/690 (31%), Positives = 357/690 (51%), Gaps = 92/690 (13%)

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
            PD      +L+ C +   V  GR VH +V   GF+    V   LI MY +CG + EA++
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VF+ +  ++V AW  MI  Y Q G  + A+ +FY+M  E V PT+V+  +IL+A A+ ++
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           L +G + H   +  G E D  +G+++IN Y+K G +  A   F R+  RD+V+W  +IA+
Sbjct: 122 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 181

Query: 359 YVQSGQ----------------------------------------------------SD 366
            VQ  Q                                                    SD
Sbjct: 182 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESD 241

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
           V V +S ++M+     + +A+++F  ++ RDVV WN ++  Y      GEA RLF ++Q 
Sbjct: 242 VRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQ 301

Query: 427 EGISPNIISWNSVI-----LGFLRNGQM------------------------------NE 451
           +GI  N I++  ++     L  L  G++                               +
Sbjct: 302 DGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQ 361

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A  +F+ M S     ++ITWT +     QN    EA+  FQEM   G +P++ T+   L 
Sbjct: 362 AWKIFVDMGS----KDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLD 417

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
            C  +A+L+ GR IH ++I +   +   + T+L++MY KCG + +A+ VF+    +++ V
Sbjct: 418 TCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILV 477

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           +N+M+  YA HG   E L LF  +Q  G   D+++F ++L+A SH+G V +G + FV M 
Sbjct: 478 WNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAML 537

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP-CDPDAHIIGSLLSTCVKSNETEL 690
            D  + P+ E +GCVV+LL R G + EA+ ++L +  C PD  +  +LL  C   N+T+ 
Sbjct: 538 QDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQ 597

Query: 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGE 750
           A+  +E +L+ +P + G YV LSN YAA+G W+ V+++R +M+ +G++K PG S I+I  
Sbjct: 598 AKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILN 657

Query: 751 ELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            +H F+  DRSHP+   IYA L +L   +R
Sbjct: 658 RVHEFLEGDRSHPRRHPIYAELDVLNSEMR 687


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  387 bits (995), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/761 (31%), Positives = 388/761 (50%), Gaps = 87/761 (11%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +Q+H+R    G  F  +  V   L+  Y+K   ++ A ++F  + +K++ +W A+I    
Sbjct: 180 KQVHSRTFYYG--FDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLS 237

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           + GL E+A++ F +M    + P  +VL +VL A   +     G  +H  V+K GF    +
Sbjct: 238 QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETY 297

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V + L+ +Y +   L  A ++F  M +R+ V++NS+I G VQ G ++ A+ +F +M  + 
Sbjct: 298 VCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC 357

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           ++P  ++V S+LSA A++ AL +G Q H+ A+  GM  D +L  S+++ YSK   +E A 
Sbjct: 358 LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 339 VVFSRMVERDIVTWNLLIASY--------------------------------------- 359
             F      +IV WN+++ +Y                                       
Sbjct: 418 KFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG 477

Query: 360 ------------VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                       +++G Q +V V S ++DMYAK  ++  A ++   +   DVV W  ++A
Sbjct: 478 ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK-------- 453
            Y       EA +LF +M+  GI  + I + S I     +  LR GQ   A+        
Sbjct: 538 GYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGA 597

Query: 454 -------------------DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
                              + +L  + +G + N I+W +L+SGL Q+    EA+  F  M
Sbjct: 598 DLSINNALISLYARCGRIQEAYLAFEKIGDKNN-ISWNSLVSGLAQSGYFEEALQVFVRM 656

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
           L T  + +  T   A+SA   +A+++ G+ IH  +++        +  SL+ +YAK G+I
Sbjct: 657 LRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSI 716

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A R F+    + +  +NAMI+GY+ HG  +EAL LF+ ++  GI P+ +TF  +L+AC
Sbjct: 717 SDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSAC 776

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
           SH GLV EGL+ F  MF  H + P  EH+ CVV+LL R G LD A+  I  MP   DA I
Sbjct: 777 SHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMI 836

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
             +LLS CV     E+ E  + HLL+LEP++   YV +SN YA S +W      R +MK+
Sbjct: 837 WRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKD 896

Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           +G++K PG SWI++   +H F A D+ HP T +IY  +  L
Sbjct: 897 RGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHL 937



 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 181/699 (25%), Positives = 322/699 (46%), Gaps = 97/699 (13%)

Query: 52  SSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDF 111
           ++L  E+   + + L+  M+ R  +   + Y  LL+GC+    ++   ++H RI K+G  
Sbjct: 31  TTLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSG-- 88

Query: 112 FARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFV 171
           F     +   LV  Y +      A ++F     ++VFSW  +I +      + +    F 
Sbjct: 89  FDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFR 148

Query: 172 EMQEDGVSPDNFVLPNVLKAC-GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            M  +G++P+ +    VLKAC G      + + VH      GFD    VA+ LID+Y K 
Sbjct: 149 RMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKN 208

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E A+KVF+ +  +++V W +MI G  QNGL EEAI +F +M    + PT   ++S+L
Sbjct: 209 GYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVL 268

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SAS  +   + G+Q H + +  G   +  + + ++  YS+   L  AE +FS M  RD V
Sbjct: 269 SASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGV 328

Query: 351 TWNLLIASYVQSG----------------------------------------------- 363
           ++N LI+  VQ G                                               
Sbjct: 329 SYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHA 388

Query: 364 -----QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                 +D+++  S++D+Y+KC  ++ A + F +    ++VLWN +L AY  L    ++ 
Sbjct: 389 IKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSF 448

Query: 419 RLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK-----------------DMF 456
            +F QMQ+EG+ PN  ++ S++     LG L  G+                      DM+
Sbjct: 449 EIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMY 508

Query: 457 LQMQSLGV---------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
            +   L +         + ++++WT +I+G  Q+   +EA+  F+EM   GI+       
Sbjct: 509 AKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFA 568

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
            A+SAC  + +LR G+ IH             I  +L+ +YA+CG I +A   F+    K
Sbjct: 569 SAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDK 628

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE-- 625
               +N+++SG A  G   EAL +F  + +   + +  T+ + ++A +    + +G +  
Sbjct: 629 NNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIH 688

Query: 626 ---LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
              L  G  S+ +V  S+      ++L ++ G++ +A R
Sbjct: 689 SMVLKTGYDSEREVSNSL------ISLYAKSGSISDAWR 721



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 131/257 (50%), Gaps = 2/257 (0%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+   +     EA+ L  EM+ R  Q     +   +  C   R +  GQQIHA+ 
Sbjct: 531 SWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQS 590

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
              G  F  +  +   L+  YA+C  +  A   F ++  KN  SW +++    + G  E+
Sbjct: 591 YAAG--FGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEE 648

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  FV M       + F   + + A  +L  +  G+ +H  VLK G+D    V++SLI 
Sbjct: 649 ALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLIS 708

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y K G + +A + F+ M  RNV++WN+MI GY Q+G   EA+R+F EM + G+ P  V+
Sbjct: 709 LYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVT 768

Query: 286 VTSILSASANLDALDEG 302
              +LSA +++  + EG
Sbjct: 769 FVGVLSACSHIGLVKEG 785



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 34/233 (14%)

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M E G++ +       L  C    SL     +H  + +        ++ SLVD Y + G+
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
            H A +VFD + ++ +  +N MI  +       +   LF+ +  +GI P+  TF  +L A
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA 168

Query: 614 C------------SHAGLVNEGLE-------LFVGMFSDH-QVKPSMEHFGCV------- 646
           C             H+     G +       L + ++S +  ++ + + F C+       
Sbjct: 169 CVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVT 228

Query: 647 ----VNLLSRCGNLDEALRVILTMPCD---PDAHIIGSLLSTCVKSNETELAE 692
               ++ LS+ G  +EA+ +   M      P  +++ S+LS   K    EL E
Sbjct: 229 WVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGE 281


>gi|297798028|ref|XP_002866898.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312734|gb|EFH43157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 742

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/699 (33%), Positives = 372/699 (53%), Gaps = 60/699 (8%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           ++ +A I+  G+  + N +V +KL+  YA     +++SR+F  +  ++VF W +II  + 
Sbjct: 49  RKHNALIITGGN--SENIFVASKLISSYASYGKPNLSSRVFDLVTRRDVFLWNSIIKAHF 106

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCV 217
             G   ++L  F  M   G SPD+F  P V+ AC  L W   G  VHG+VLK G F+   
Sbjct: 107 SNGDYARSLGFFFSMLLSGQSPDHFTAPMVVSACAELLWFDVGSFVHGFVLKHGGFERNT 166

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            V +S +  Y KCG L++A  VFD M  R+VVAW ++I G+VQN  +E A+    +M   
Sbjct: 167 AVGASFVYFYSKCGFLQDACLVFDEMPERDVVAWTAIISGHVQNRESERALGYLCKMHTV 226

Query: 278 GVE---PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
           G +   P   ++     A +NL AL EG+  H  AV NG+   NV+ SSI + YSK G  
Sbjct: 227 GSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSNVVQSSIFSLYSKSGNP 286

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMY 377
            +A + F  + ++D+ +W  +IAS V+SG                 Q D +V S ++   
Sbjct: 287 AEAYLSFRELGDQDMFSWTSIIASLVRSGNVEESFDMFWEMQNKGMQPDGIVISCLISEL 346

Query: 378 AKCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
            K   +   K  F+  ++R     D  + N+LL+ Y        A +LF ++  EG   N
Sbjct: 347 GKKMLVPEGK-AFHGFVIRHCFSLDSTVCNSLLSMYCKFEFLSVAEKLFCKISEEG---N 402

Query: 433 IISWNSVILGF-------------------LRNGQMNEAKDMFLQMQSLGV--------Q 465
             +WN+++ G+                   L    +N   D++ +M  L V         
Sbjct: 403 TEAWNTMLKGYGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEAD 462

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            N++TW  +I+        ++AI  F  M+    KPS+ T+   L AC +  SL  G+ I
Sbjct: 463 TNIVTWNAMIASYVYCEQPDKAIALFDRMVSENFKPSSITLVTLLMACANTGSLERGQMI 522

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           H Y+I  +  +   + T+L+DMYAKCG++ +++ +FD +  K+   +N MISGY MHG  
Sbjct: 523 HRYIIETEHEMNLSLSTALIDMYAKCGHLEKSRELFDAASQKDAVCWNVMISGYGMHGHV 582

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
             A+ALF  +++  + P   TF  +L+AC+HAGLV  G  LF+ M   + VKP+++H+ C
Sbjct: 583 ESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEHGKNLFLKM-HQYDVKPNLKHYSC 641

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           +V+LLSR GNL EA   +++MP  PD  I G+LLS+C+   E E+   +++  +  +P N
Sbjct: 642 LVDLLSRSGNLQEAETTVMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRMADRAVASDPQN 701

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
            G Y+ L+N Y+A+G+W +  + R++M+E G+ K  G S
Sbjct: 702 DGYYIMLANMYSAAGKWEQAERAREMMRESGVGKRAGHS 740



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 152/332 (45%), Gaps = 31/332 (9%)

Query: 301 EGKQAHAVAVINGMELDNV-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
           E  + H   +I G   +N+ + S +I+ Y+  G    +  VF  +  RD+  WN +I ++
Sbjct: 46  ESLRKHNALIITGGNSENIFVASKLISSYASYGKPNLSSRVFDLVTRRDVFLWNSIIKAH 105

Query: 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSG 415
             +G             YA+      +   F S++L     D      +++A A+L    
Sbjct: 106 FSNGD------------YAR------SLGFFFSMLLSGQSPDHFTAPMVVSACAELLWFD 147

Query: 416 EASRLF-YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
             S +  + ++  G   N     S +  + + G + +A  +F +M     + +++ WT +
Sbjct: 148 VGSFVHGFVLKHGGFERNTAVGASFVYFYSKCGFLQDACLVFDEMP----ERDVVAWTAI 203

Query: 475 ISGLTQNSCGNEAILFFQEMLETGI---KPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           ISG  QN     A+ +  +M   G    KP+  T+ C   AC+++ +L+ GR +HG+ ++
Sbjct: 204 ISGHVQNRESERALGYLCKMHTVGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVK 263

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
           + L     + +S+  +Y+K GN  +A   F     +++  + ++I+     G   E+  +
Sbjct: 264 NGLASSNVVQSSIFSLYSKSGNPAEAYLSFRELGDQDMFSWTSIIASLVRSGNVEESFDM 323

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
           F  +Q KG+ PD I  + +++      LV EG
Sbjct: 324 FWEMQNKGMQPDGIVISCLISELGKKMLVPEG 355



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 11/225 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+S    +Q  +A+ L   M   NF+        LL  C     +  GQ IH  I++   
Sbjct: 472 IASYVYCEQPDKAIALFDRMVSENFKPSSITLVTLLMACANTGSLERGQMIHRYIIETEH 531

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               N  + T L+  YAKC  L+ +  LF     K+   W  +I      G  E A+  F
Sbjct: 532 --EMNLSLSTALIDMYAKCGHLEKSRELFDAASQKDAVCWNVMISGYGMHGHVESAIALF 589

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGR----AVHGYVLKVGFDGCVFVASSLIDM 226
            +M+E  V P       +L AC   G V  G+     +H Y +K          S L+D+
Sbjct: 590 DQMEESDVKPTGPTFLALLSACTHAGLVEHGKNLFLKMHQYDVKPNLKH----YSCLVDL 645

Query: 227 YGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRV 270
             + G+L+EA      M  + + V W +++   + +G  E  IR+
Sbjct: 646 LSRSGNLQEAETTVMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRM 690


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/715 (30%), Positives = 380/715 (53%), Gaps = 35/715 (4%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL-- 142
           +L  C    D+  G+ +H RI      F R+  V   L+  Y KCD+L  A  +F  +  
Sbjct: 13  VLCSCSSCGDVAEGRALHERI--RCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDW 70

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
           R +NV SW A+I    + G S +AL+ +  M   G+  D+    +VL AC +L     GR
Sbjct: 71  RQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GR 127

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            +H  V   G D    +A++L+ MY + G + +A+++F  +  R+  +WN++I+ + Q+G
Sbjct: 128 EIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSG 187

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
               A+R+F EM  + ++P   +  +++S  +  + L EG++ HA  V NG + D V+ +
Sbjct: 188 DWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVAT 246

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV------------- 369
           ++IN Y K G   +A  VF +M +RD+V+WN++I  YVQ+G     +             
Sbjct: 247 ALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKR 306

Query: 370 -ASSIVDMYAKCERIDNAKQ---VFNSIILR----DVVLWNTLLAAYADLGRSGEASRLF 421
             ++ V +   C  +    Q   V + I+ R    +V +   L+  YA  G   EA ++F
Sbjct: 307 TKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVF 366

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
             M+    + + ++W+++I  +  NG   +A+        LG + + I W  +I+   QN
Sbjct: 367 NAMK----NRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR-DTICWNAMITTYVQN 421

Query: 482 SCGNEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
            C   A+  F+EM    G+KP   T    L AC  +  L   +A+H  +   +L     +
Sbjct: 422 GCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVV 481

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
             +L++MYA+CG++ +A+R+F  +  K +  + AM++ ++ +G   EAL LF+ +  +G+
Sbjct: 482 TNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGV 541

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
            PD +T+T+IL  C+H G + +G   F  M   H + P+ +HF  +V+LL R G L +A 
Sbjct: 542 KPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAK 601

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
            ++ +MP +PD     + L+ C    + EL E  +E + +L+P +   Y+A+SN YAA G
Sbjct: 602 ELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHG 661

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            W +V+ VR  M+E+GL+K PG S+I++  +LH F +  + HP+T+EI   L  L
Sbjct: 662 MWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRL 716



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/505 (23%), Positives = 229/505 (45%), Gaps = 127/505 (25%)

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           +P  V+  ++L + ++   + EG+  H     +  E D ++G+++I+ Y K   L DA  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 340 VFSRM--VERDIVTWNLLIASYVQSGQSDVV----------------------------- 368
           VF  M   +R++V+WN +IA+Y Q+G S                                
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 369 --------------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                               +A+++V MYA+   + +AK++F S+  RD   WN ++ A+
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL------------------------ 444
           +  G    A R+F +M+ + + PN  ++ +VI GF                         
Sbjct: 184 SQSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDL 242

Query: 445 -----------RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
                      + G  +EA+++F +M+    + ++++W  +I    QN   +EA+  +Q+
Sbjct: 243 VVATALINMYGKCGSSHEAREVFDKMK----KRDMVSWNVMIGCYVQNGDFHEALELYQK 298

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           +   G K +  T    L AC+ V +L  GR +H +++   L     + T+LV+MYAKCG+
Sbjct: 299 LDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGS 358

Query: 554 IHQ----------------------------------AKRVFDISPSKELPVYNAMISGY 579
           + +                                  A++VFD   S++   +NAMI+ Y
Sbjct: 359 LEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTY 418

Query: 580 AMHGLAVEALALFKNLQ-QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
             +G AV A+ +F+ +    G+ PD++TF  +L AC+  G ++E ++      S+ +++ 
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQISESELES 477

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVI 663
           ++     ++N+ +RCG+L+EA R+ 
Sbjct: 478 NVVVTNTLINMYARCGSLEEAERLF 502


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/715 (30%), Positives = 380/715 (53%), Gaps = 35/715 (4%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL-- 142
           +L  C    D+  G+ +H RI      F R+  V   L+  Y KCD+L  A  +F  +  
Sbjct: 13  VLCSCSSCGDVVEGRALHERI--RCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDW 70

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
           R +NV SW A+I    + G S +AL+ +  M   G+  D+    +VL AC +L     GR
Sbjct: 71  RQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GR 127

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            +H  V   G D    +A++L+ MY + G + +A+++F  +  R+  +WN++I+ + Q+G
Sbjct: 128 EIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSG 187

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
               A+R+F EM  + V+P   +  +++S  +  + L EG++ HA  V NG + D V+ +
Sbjct: 188 DWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVAT 246

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV------------- 369
           ++IN Y K G   +A  VF +M +RD+V+WN++I  YV +G     +             
Sbjct: 247 ALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKR 306

Query: 370 -ASSIVDMYAKCERIDNAKQ---VFNSIILR----DVVLWNTLLAAYADLGRSGEASRLF 421
             ++ V +   C  +    Q   V + I+ R    +V +   L+  YA  G   EA ++F
Sbjct: 307 TKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVF 366

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
             M+    + + ++W+++I  +  NG   +A+        LG + + I+W  +I+   QN
Sbjct: 367 NAMK----NRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR-DTISWNAMITTYVQN 421

Query: 482 SCGNEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
            C   A+  F+EM    G+KP   T    L AC  +  L   +A+H  +   +L     +
Sbjct: 422 GCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVV 481

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
             +L++MYA+CG++ +A+R+F  +  K +  + AM++ ++ +G   EAL LF+ +  +G+
Sbjct: 482 TNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGV 541

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
            PD +T+T+IL  C+H G + +G   F  M   H + P+ +HF  +V+LL R G L +A 
Sbjct: 542 KPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAK 601

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
            ++ +MP +PD     + L+ C    + EL E  +E + +L+P +   Y+A+SN YAA G
Sbjct: 602 ELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHG 661

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            W +V+ VR  M+E+GL+K PG S+I++  +LH F +  + HP+T+EI   L  L
Sbjct: 662 MWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRL 716



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 228/505 (45%), Gaps = 127/505 (25%)

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           +P  V+  ++L + ++   + EG+  H     +  E D ++G+++I+ Y K   L DA  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 340 VFSRM--VERDIVTWNLLIASYVQSGQSDVV----------------------------- 368
           VF  M   +R++V+WN +IA+Y Q+G S                                
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 369 --------------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                               +A+++V MYA+   + +AK++F S+  RD   WN ++ A+
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL------------------------ 444
           +  G    A R+F +M+ + + PN  ++ +VI GF                         
Sbjct: 184 SQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDL 242

Query: 445 -----------RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
                      + G  +EA+++F +M+    + ++++W  +I     N   +EA+  +Q+
Sbjct: 243 VVATALINMYGKCGSSHEAREVFDKMK----KRDMVSWNVMIGCYVLNGDFHEALELYQK 298

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           +   G K +  T    L AC+ V +L  GR +H +++   L     + T+LV+MYAKCG+
Sbjct: 299 LDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGS 358

Query: 554 IHQ----------------------------------AKRVFDISPSKELPVYNAMISGY 579
           + +                                  A++VFD   S++   +NAMI+ Y
Sbjct: 359 LEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTY 418

Query: 580 AMHGLAVEALALFKNLQ-QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
             +G AV A+ +F+ +    G+ PD++TF  +L AC+  G ++E ++      S+ +++ 
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQISESELES 477

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVI 663
           ++     ++N+ +RCG+L+EA R+ 
Sbjct: 478 NVVVTNTLINMYARCGSLEEAERLF 502


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/692 (31%), Positives = 365/692 (52%), Gaps = 83/692 (11%)

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           GV PD +  P V+K C  L  V  G+ +   +L++GFD  +FVASSLI +Y   G +E+A
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           R+ FD MI ++ V WN MI GYVQ G ++ AI++F +M     +P  V+   +LS S + 
Sbjct: 65  RRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSE 124

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN--- 353
             ++ G+Q H + V +G++   ++G++++  YSK   L DA  +F  M + D+V WN   
Sbjct: 125 AMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMI 184

Query: 354 -------------LLIASYVQSGQS----------------------------------- 365
                        +L    + +G                                     
Sbjct: 185 GGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVI 244

Query: 366 -DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
            DV + S+++D+Y KC     A ++FN     D+V++  +++ Y   G + +A  +F  +
Sbjct: 245 LDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWL 304

Query: 425 QLEGISPNIISWNSVIL---------------GFLRNGQMNEA-------KDMFLQMQSL 462
             + + PN ++++S++                G++   ++ E         +M+ +   L
Sbjct: 305 LQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRL 364

Query: 463 GVQ---------PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +           + I W ++I+  +Q+    EAI  F++M   G+K    T++ ALSAC
Sbjct: 365 DLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSAC 424

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            ++ +L  G+ IHG++I+         +++L++MYAKCG ++ A+ VF++   K    +N
Sbjct: 425 ANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWN 484

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           ++I+ Y  HG   ++LALF N+ ++GI PD ITF  IL++C HAG V +G+  F  M  +
Sbjct: 485 SIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEE 544

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           + +   MEH+ C+ +L  R G+LDEA  VI +MP  P A + G+LL  C      ELAE 
Sbjct: 545 YGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEV 604

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            S +LL LEP N G Y+ L++  A +G+W  V +++ +MKE+G++K PGCSWI++     
Sbjct: 605 ASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNNTTC 664

Query: 754 VFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           VF A D SHP++ +IY+ L  L + +R V  V
Sbjct: 665 VFFAADGSHPESPQIYSLLKSLLLELRKVGYV 696



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 150/293 (51%), Gaps = 4/293 (1%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  +L  C     +  G+++H  I+KN         V + ++  YAKC  LD+A  +F R
Sbjct: 316 FSSILPACAGLAAIKLGRELHGYIIKNE--LEEKCPVGSAIMNMYAKCGRLDLAHLIFGR 373

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           + +K+   W +II    + G  E+A+  F +M  +GV  D   +   L AC  +  + +G
Sbjct: 374 ISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYG 433

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +HG+++K  F+  +F  S+LI+MY KCG L  AR VF+ M  +N VAWNS+I  Y  +
Sbjct: 434 KEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYH 493

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVL 320
           G   +++ +F+ M  EG++P  ++  +ILS+  +   +++G +    +    G+      
Sbjct: 494 GYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEH 553

Query: 321 GSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASS 372
            + + + + + G L++A EV+ S         W  L+ +    G  ++   +S
Sbjct: 554 YACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVAS 606



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%)

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           ML  G+ P   T    +  CT + ++R G+ I   ++     L   + +SL+ +YA  G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           I  A+R FD    K+  ++N MI+GY   G +  A+ LFK++      PDS+TF  +L+ 
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 614 CSHAGLVNEGLEL 626
                +V  G +L
Sbjct: 121 SCSEAMVEYGRQL 133



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 3/194 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+S S++ +  EA+ L  +M     +         L  C     ++ G++IH  ++K   
Sbjct: 386 ITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGA- 444

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +  + L+  YAKC  L++A  +F  ++ KN  +W +II      G    +L  F
Sbjct: 445 -FESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALF 503

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDGCVFVASSLIDMYGK 229
             M E+G+ PD+     +L +CG  G V  G R       + G    +   + + D++G+
Sbjct: 504 HNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGR 563

Query: 230 CGDLEEARKVFDGM 243
            G L+EA +V   M
Sbjct: 564 AGHLDEAFEVITSM 577


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/732 (32%), Positives = 386/732 (52%), Gaps = 68/732 (9%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           +IS L +  +I EAV +  +M  RN               V    M +    + RI    
Sbjct: 21  RISQLGRSGRIEEAVAVFLQMTERNI--------------VTYNSMISAYAKNGRIANAR 66

Query: 110 DFF----ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           + F     RN      ++  Y   + ++ A+RLF R+  ++++SW  +I    R+G  EK
Sbjct: 67  ELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEK 126

Query: 166 A--LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC----VFV 219
           A  L   +  ++D V  +  +              G+ +       K  FD      V  
Sbjct: 127 ARELFNLLPDKQDTVCRNALI-------------AGYAKKRLFREAKKLFDEMLVKNVVS 173

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            +S++  Y K G ++   + F+ M  RNVV+WN M+ GYV  G  + A   F ++     
Sbjct: 174 WNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP---- 229

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAE 338
            P  VS  ++LS  A+      G+   A  + N M   N++  +++I  Y +   ++DA 
Sbjct: 230 TPNVVSWVTMLSGFAHY-----GRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAY 284

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDN 385
            +F  M E+D V+W  +I  YV+ G+              ++   +++++ Y +  R+D 
Sbjct: 285 KLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDE 344

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A ++F+ I +RD V WN+++  YA  GR+ EA RLF +M    +  +++SWN++I  + +
Sbjct: 345 ANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM----VCKDMVSWNTMIAAYAQ 400

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
            GQM++A +MF +MQ    + N+++W +LI+G  QN    EA+  F  M + G KP  TT
Sbjct: 401 AGQMDKALEMFNEMQ----ERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTT 456

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           I C L A  ++A+L  G  +H   I+        +  +++ MYAK G + +A+ VF    
Sbjct: 457 IVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIK 516

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
           +K++  +N++I+GYA++G   EA+ LF+ +  +GI PD +TFT +L+AC+H G V++GL 
Sbjct: 517 NKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLN 576

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
           LF  M   + +KP  EH+ CV+NLL R G L+EA+ ++  M     A I G+LL  C   
Sbjct: 577 LFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIH 636

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
           +  ELA+Y +E LL LEP N  NYV LSN +A +GRW+ V +VR +MKE    K PGCSW
Sbjct: 637 HNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSW 696

Query: 746 IQIGEELHVFVA 757
           I+I  +LH F++
Sbjct: 697 IEIDNQLHCFLS 708



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 146/568 (25%), Positives = 246/568 (43%), Gaps = 113/568 (19%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VF  +  I   G+ G +EEA  VF  M  RN+V +NSMI  Y +NG    A  +F  M  
Sbjct: 15  VFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLM-- 72

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
               P R           NL                      V  +S+I  Y    L+ED
Sbjct: 73  ----PQR-----------NL----------------------VSWNSMIAGYLHNELVED 95

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQ--------------SDVVVASSIVDMYAKCER 382
           A  +F RM +RDI +W L+I  Y + G+               D V  ++++  YAK   
Sbjct: 96  AARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRL 155

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGR----------SGEASRLFYQMQLEGI--- 429
              AK++F+ +++++VV WN++L+ Y   G+           GE + + + + ++G    
Sbjct: 156 FREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGV 215

Query: 430 --------------SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
                         +PN++SW +++ GF   G+M EA+++F +M +     NL++W  +I
Sbjct: 216 GDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPT----KNLVSWNAMI 271

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
               + +  ++A   F EM E      + + T  ++    V  L   R I   +   ++ 
Sbjct: 272 GAYVRENQIDDAYKLFMEMPE----KDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIA 327

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
                 T++++ Y + G + +A  +F     ++   +N+MI+GYA  G   EAL LF   
Sbjct: 328 AQ----TAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLF--- 380

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
            Q+ +  D +++  ++ A + AG +++ LE+F  M   + V  +    G V N     G 
Sbjct: 381 -QEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQN-----GL 434

Query: 656 LDEALRVILTMPCD---PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP-GNYVA 711
             EAL   + M      PD   I      C++++    A  +   L  L      GN + 
Sbjct: 435 YFEALNCFILMKQQGEKPDQTTI----VCCLRASANLAALNVGVQLHHLTIKTGFGNDLF 490

Query: 712 LSNA----YAASGRWNEVSQVRDIMKEK 735
           + NA    YA SGR  E   V   +K K
Sbjct: 491 VKNAILTMYAKSGRVPEAENVFAEIKNK 518


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/761 (31%), Positives = 387/761 (50%), Gaps = 87/761 (11%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +Q+H+R    G  F  +  V   L+  Y+K   ++ A ++F  + +K++ +W A+I    
Sbjct: 180 KQVHSRTFYYG--FDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLS 237

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           + GL E+A++ F +M    + P  +VL +VL A   +     G  +H  V+K GF    +
Sbjct: 238 QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETY 297

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V + L+ +Y +   L  A ++F  M +R+ V++NS+I G VQ G ++ A+ +F +M  + 
Sbjct: 298 VCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC 357

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           ++P  ++V S+LSA A++ AL +G Q H+ A+  GM  D +L  S+++ YSK   +E A 
Sbjct: 358 LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 339 VVFSRMVERDIVTWNLLIASY--------------------------------------- 359
             F      +IV WN+++ +Y                                       
Sbjct: 418 KFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG 477

Query: 360 ------------VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                       +++G Q +V V S ++DMYAK  ++  A ++   +   DVV W  ++A
Sbjct: 478 ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK-------- 453
            Y       EA +LF +M+  GI  + I + S I     +  LR GQ   A+        
Sbjct: 538 GYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGA 597

Query: 454 -------------------DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
                              + +L  + +G + N I+W +L+SGL Q+    EA+  F  M
Sbjct: 598 DLSINNALISLYARCGRIQEAYLAFEKIGDKNN-ISWNSLVSGLAQSGYFEEALQVFVRM 656

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
           L T  + +  T   A+SA   +A+++ G+ IH  +++        +  SL+ +YAK G+I
Sbjct: 657 LRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSI 716

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A R F+    + +  +NAMI+GY+ HG  +EAL LF+ ++  GI P+ +TF  +L+AC
Sbjct: 717 SDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSAC 776

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
           SH GLV EGL+ F  MF  H + P  EH+ CVV+LL R G LD A+  I  MP   DA I
Sbjct: 777 SHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMI 836

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
             +LLS CV     E+ E  + HLL+LEP++   YV +SN YA S +W      R +MK+
Sbjct: 837 WRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKD 896

Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            G++K PG SWI++   +H F A D+ HP T +IY  +  L
Sbjct: 897 XGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHL 937



 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 181/699 (25%), Positives = 321/699 (45%), Gaps = 97/699 (13%)

Query: 52  SSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDF 111
           ++L  E+   + + L+  M+ R  +   + Y  LL+GC+    ++   ++H RI K+G  
Sbjct: 31  TTLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSG-- 88

Query: 112 FARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFV 171
           F     +   LV  Y +      A ++F     ++VFSW  +I +      + +    F 
Sbjct: 89  FDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFR 148

Query: 172 EMQEDGVSPDNFVLPNVLKAC-GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            M  +G++P+ +    VLKAC G      + + VH      GFD    VA+ LID+Y K 
Sbjct: 149 RMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKN 208

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E A+KVF+ +  +++V W +MI G  QNGL EEAI +F +M    + PT   ++S+L
Sbjct: 209 GYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVL 268

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SAS  +   + G+Q H + +  G   +  + + ++  YS+   L  AE +FS M  RD V
Sbjct: 269 SASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGV 328

Query: 351 TWNLLIASYVQSG----------------------------------------------- 363
           ++N LI+  VQ G                                               
Sbjct: 329 SYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHA 388

Query: 364 -----QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                 +D+++  S++D+Y+KC  ++ A + F      ++VLWN +L AY  L    ++ 
Sbjct: 389 IKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSF 448

Query: 419 RLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK-----------------DMF 456
            +F QMQ+EG+ PN  ++ S++     LG L  G+                      DM+
Sbjct: 449 EIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMY 508

Query: 457 LQMQSLGV---------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
            +   L +         + ++++WT +I+G  Q+   +EA+  F+EM   GI+       
Sbjct: 509 AKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFA 568

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
            A+SAC  + +LR G+ IH             I  +L+ +YA+CG I +A   F+    K
Sbjct: 569 SAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDK 628

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE-- 625
               +N+++SG A  G   EAL +F  + +   + +  T+ + ++A +    + +G +  
Sbjct: 629 NNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIH 688

Query: 626 ---LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
              L  G  S+ +V  S+      ++L ++ G++ +A R
Sbjct: 689 SMVLKTGYDSEREVSNSL------ISLYAKSGSISDAWR 721



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 131/257 (50%), Gaps = 2/257 (0%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+   +     EA+ L  EM+ R  Q     +   +  C   R +  GQQIHA+ 
Sbjct: 531 SWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQS 590

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
              G  F  +  +   L+  YA+C  +  A   F ++  KN  SW +++    + G  E+
Sbjct: 591 YAAG--FGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEE 648

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  FV M       + F   + + A  +L  +  G+ +H  VLK G+D    V++SLI 
Sbjct: 649 ALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLIS 708

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y K G + +A + F+ M  RNV++WN+MI GY Q+G   EA+R+F EM + G+ P  V+
Sbjct: 709 LYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVT 768

Query: 286 VTSILSASANLDALDEG 302
              +LSA +++  + EG
Sbjct: 769 FVGVLSACSHIGLVKEG 785



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 34/233 (14%)

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M E G++ +       L  C    SL     +H  + +        ++ SLVD Y + G+
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
            H A +VFD + ++ +  +N MI  +       +   LF+ +  +GI P+  TF  +L A
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA 168

Query: 614 C------------SHAGLVNEGLE-------LFVGMFSDH-QVKPSMEHFGCV------- 646
           C             H+     G +       L + ++S +  ++ + + F C+       
Sbjct: 169 CVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVT 228

Query: 647 ----VNLLSRCGNLDEALRVILTMPCD---PDAHIIGSLLSTCVKSNETELAE 692
               ++ LS+ G  +EA+ +   M      P  +++ S+LS   K    EL E
Sbjct: 229 WVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGE 281


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/757 (31%), Positives = 387/757 (51%), Gaps = 107/757 (14%)

Query: 77  IGPEIYG--ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV 134
           I P+ Y    LL+     +DM  G+QIHA + K G +   +  V   LV  Y KC     
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG-YGVDSVTVANTLVNLYRKCGDFGA 64

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
             ++F R+  +N  SW ++I   C     E AL  F  M ++ V P +F L +V+ AC  
Sbjct: 65  VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 124

Query: 195 LGW---VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           L     +  G+ VH Y L+ G +   F+ ++L+ MYGK G L  ++ +      R++V W
Sbjct: 125 LPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTW 183

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N+++    QN    EA+    EM LEGVEP   +++S+L A ++L+ L  GK+ HA A+ 
Sbjct: 184 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 243

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVAS 371
           NG                                                S   +  V S
Sbjct: 244 NG------------------------------------------------SLDENSFVGS 255

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ------ 425
           ++VDMY  C+++ + ++VF+ +  R + LWN ++A Y+      EA  LF  M+      
Sbjct: 256 ALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLL 315

Query: 426 -----LEGISPNII-----SWNSVILGFL--------------------RNGQMNEAKDM 455
                + G+ P  +     S    I GF+                    R G+++ A  +
Sbjct: 316 ANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRI 375

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM--LE---------TGIKPSTT 504
           F +M+      +L+TW T+I+G   +    +A+L   +M  LE           +KP++ 
Sbjct: 376 FGKME----DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSI 431

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           T+   L +C  +++L  G+ IH Y I+++L     + ++LVDMYAKCG +  +++VFD  
Sbjct: 432 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 491

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
           P K +  +N +I  Y MHG   EA+ L + +  +G+ P+ +TF ++  ACSH+G+V+EGL
Sbjct: 492 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 551

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSLLSTCV 683
            +F  M  D+ V+PS +H+ CVV+LL R G + EA +++  MP D + A    SLL    
Sbjct: 552 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASR 611

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
             N  E+ E  +++L+QLEP+   +YV L+N Y+++G W++ ++VR  MKE+G+RK PGC
Sbjct: 612 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGC 671

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           SWI+ G+E+H FVA D SHP++E++   L  L   +R
Sbjct: 672 SWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMR 708



 Score =  179 bits (454), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 219/422 (51%), Gaps = 28/422 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +SSL + +Q+ EA++ L EM     +        +L  C +   + TG+++HA  LKNG 
Sbjct: 187 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 246

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               N +V + LV  Y  C  +    R+F  +  + +  W A+I    +    ++AL+ F
Sbjct: 247 -LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 305

Query: 171 VEMQED-GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           + M+E  G+  ++  +  V+ AC   G      A+HG+V+K G D   FV ++L+DMY +
Sbjct: 306 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 365

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLE----------G 278
            G ++ A ++F  M  R++V WN+MI GYV +  +E+A+ + ++M  LE           
Sbjct: 366 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 425

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           ++P  +++ +IL + A L AL +GK+ HA A+ N +  D  +GS++++ Y+K G L+ + 
Sbjct: 426 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 485

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
            VF ++ +++++TWN++I +Y   G                 E ID  + +    +  + 
Sbjct: 486 KVFDQIPQKNVITWNVIIMAYGMHGNGQ--------------EAIDLLRMMMVQGVKPNE 531

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFL 457
           V + ++ AA +  G   E  R+FY M+ + G+ P+   +  V+    R G++ EA  +  
Sbjct: 532 VTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMN 591

Query: 458 QM 459
            M
Sbjct: 592 MM 593



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 208/466 (44%), Gaps = 89/466 (19%)

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV-LGSSIINFYSKVG 332
           M + G++P   +  ++L A A+L  ++ GKQ HA     G  +D+V + ++++N Y K G
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVAS--------------SIVDMYA 378
                  VF R+ ER+ V+WN LI+S     + ++ + +              ++V +  
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 379 KC------ERIDNAKQV---------FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
            C      E +   KQV          NS I+      NTL+A Y  LG+   +  L   
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKGELNSFII------NTLVAMYGKLGKLASSKVLLGS 174

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
                   ++++WN+V+    +N Q+ EA +   +M   GV+P+                
Sbjct: 175 FG----GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD---------------- 214

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV-T 542
                                TI+  L AC+ +  LR G+ +H Y +++        V +
Sbjct: 215 -------------------EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGS 255

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK-GID 601
           +LVDMY  C  +   +RVFD    +++ ++NAMI+GY+ +    EAL LF  +++  G+ 
Sbjct: 256 ALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLL 315

Query: 602 PDSITFTNILNACSHAGLVN--EGLELFV---GMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
            +S T   ++ AC  +G  +  E +  FV   G+  D  V+ ++      +++ SR G +
Sbjct: 316 ANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTL------MDMYSRLGKI 369

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           D A+R+   M  D D     ++++  V S   E A  +   +  LE
Sbjct: 370 DIAMRIFGKME-DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 414


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/732 (32%), Positives = 385/732 (52%), Gaps = 68/732 (9%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           +IS L +  +I EAV +  +M  RN               V    M +    + RI    
Sbjct: 21  RISQLGRSGRIEEAVAVFLKMTERNI--------------VTYNSMISAYAKNGRIANAR 66

Query: 110 DFF----ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           + F     RN      ++  Y   + ++ A+RLF R+  ++++SW  +I    R+G  EK
Sbjct: 67  ELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEK 126

Query: 166 A--LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC----VFV 219
           A  L   +  ++D V  +  +              G+ +       K  FD      V  
Sbjct: 127 ARELFNLLPDKQDTVCRNALI-------------AGYAKKRLFREAKKLFDEMLVKNVVS 173

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            +S++  Y K G ++   + F+ M  RNVV+WN M+ GYV  G  + A   F ++     
Sbjct: 174 WNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP---- 229

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAE 338
            P  VS  ++LS  A+      G+   A  + N M   N++  +++I  Y +   ++DA 
Sbjct: 230 TPNVVSWVTMLSGFAHY-----GRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAY 284

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDN 385
            +F  M E+D V+W  +I  YV+ G+              ++   +++++ Y +  R+D 
Sbjct: 285 KLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDE 344

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A ++F+ I +RD V WN+++  YA  GR+ EA RLF +M    +  +++SWN++I  + +
Sbjct: 345 ANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM----VCKDMVSWNTMIAAYAQ 400

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
            GQM++A +MF +MQ    + N+++W +LI+G  QN    EA+  F  M + G KP  TT
Sbjct: 401 AGQMDKALEMFNEMQ----ERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTT 456

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           I C L A  ++A+L  G  +H   I+        +  +++ MYAK G + +A+ VF    
Sbjct: 457 IVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIK 516

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            K++  +N++I+GYA++G   EA+ LF+ +  +GI PD +TFT +L+AC+H G V++GL 
Sbjct: 517 XKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLN 576

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
           LF  M   + +KP  EH+ CV+NLL R G L+EA+ ++  M     A I G+LL  C   
Sbjct: 577 LFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIH 636

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
           +  ELA+Y +E LL LEP N  NYV LSN +A +GRW+ V +VR +MKE    K PGCSW
Sbjct: 637 HNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSW 696

Query: 746 IQIGEELHVFVA 757
           I+I  +LH F++
Sbjct: 697 IEIDNQLHCFLS 708



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 146/568 (25%), Positives = 246/568 (43%), Gaps = 113/568 (19%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VF  +  I   G+ G +EEA  VF  M  RN+V +NSMI  Y +NG    A  +F  M  
Sbjct: 15  VFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLM-- 72

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
               P R           NL                      V  +S+I  Y    L+ED
Sbjct: 73  ----PQR-----------NL----------------------VSWNSMIAGYLHNELVED 95

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQ--------------SDVVVASSIVDMYAKCER 382
           A  +F RM +RDI +W L+I  Y + G+               D V  ++++  YAK   
Sbjct: 96  AARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRL 155

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGR----------SGEASRLFYQMQLEGI--- 429
              AK++F+ +++++VV WN++L+ Y   G+           GE + + + + ++G    
Sbjct: 156 FREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGV 215

Query: 430 --------------SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
                         +PN++SW +++ GF   G+M EA+++F +M +     NL++W  +I
Sbjct: 216 GDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPT----KNLVSWNAMI 271

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
               + +  ++A   F EM E      + + T  ++    V  L   R I   +   ++ 
Sbjct: 272 GAYVRENQIDDAYKLFMEMPE----KDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIA 327

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
                 T++++ Y + G + +A  +F     ++   +N+MI+GYA  G   EAL LF   
Sbjct: 328 AQ----TAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLF--- 380

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
            Q+ +  D +++  ++ A + AG +++ LE+F  M   + V  +    G V N     G 
Sbjct: 381 -QEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQN-----GL 434

Query: 656 LDEALRVILTMPCD---PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP-GNYVA 711
             EAL   + M      PD   I      C++++    A  +   L  L      GN + 
Sbjct: 435 YFEALNCFILMKQQGEKPDQTTI----VCCLRASANLAALNVGVQLHHLTIKTGFGNDLF 490

Query: 712 LSNA----YAASGRWNEVSQVRDIMKEK 735
           + NA    YA SGR  E   V   +K K
Sbjct: 491 VKNAILTMYAKSGRVPEAENVFAEIKXK 518


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/677 (31%), Positives = 354/677 (52%), Gaps = 84/677 (12%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           +VL+ C     +  G+ VH  ++  G      + + L+ MY  CGDL + RK+FD ++  
Sbjct: 99  SVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 158

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
            V  WN ++  Y + G   E++ +F +M   GV     + T +L   A L  + E K+ H
Sbjct: 159 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVH 218

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS- 365
              +  G   +  + +S+I  Y K G +E A  +F  + E D+V+WN +I   V +G S 
Sbjct: 219 GYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG 278

Query: 366 ---------------------------------------------------DVVVASSIV 374
                                                              +VV +++++
Sbjct: 279 NGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLL 338

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
           DMY+KC  ++ A +VF  +    +V W +++AAY   G   +A  LF +MQ +G+ P+I 
Sbjct: 339 DMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIY 398

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL-------------------------- 468
           +  S++     +  +++ +D+   +   G+  NL                          
Sbjct: 399 TVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKI 458

Query: 469 -----ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
                ++W T+I G +QN   NEA+  F +M +   KP   T+ C L AC  +A+L  GR
Sbjct: 459 PVKDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGR 517

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
            IHG+++R        +  +LVDMYAKCG +  A+ +FD+ P K+L  +  MI+GY MHG
Sbjct: 518 EIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHG 577

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
              EA++ F  ++  GI+PD  +F+ ILNACSH+GL+NEG + F  M ++  V+P +EH+
Sbjct: 578 FGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHY 637

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
            CVV+LL+R GNL +A + I +MP  PD  I G LLS C   ++ +LAE ++EH+ +LEP
Sbjct: 638 ACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEP 697

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHP 763
           DN   YV L+N YA + +W EV ++R  M+++G ++NPGCSWI++G + ++FVA +  HP
Sbjct: 698 DNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHP 757

Query: 764 KTEEIYATLALLGMHVR 780
           + ++I   L+ L M ++
Sbjct: 758 QAKKIDVLLSKLTMQMQ 774


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/677 (32%), Positives = 352/677 (51%), Gaps = 84/677 (12%)

Query: 187  NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
            +VL+ C     +  G+ VH  ++  G      + + L+ MY  CGDL + RK+FD ++  
Sbjct: 374  SVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 433

Query: 247  NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
             V  WN ++  Y + G   E++ +F +M   GV     + T +L   A L  + E K+ H
Sbjct: 434  KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVH 493

Query: 307  AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS- 365
               +  G   +  + +S+I  Y K G +E A  +F  + E D+V+WN +I   V +G S 
Sbjct: 494  GYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG 553

Query: 366  ---------------------------------------------------DVVVASSIV 374
                                                               +VV +++++
Sbjct: 554  NGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLL 613

Query: 375  DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
            DMY+KC  ++ A +VF  +    +V W + +AAY   G   +A  LF +MQ +G+ P+I 
Sbjct: 614  DMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIY 673

Query: 435  SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL-------------------------- 468
            +  S++     +  +++ +D+   +   G+  NL                          
Sbjct: 674  TVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKI 733

Query: 469  -----ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
                 ++W T+I G +QNS  NEA+  F +M +   KP   T+ C L AC  +A+L  GR
Sbjct: 734  PVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGR 792

Query: 524  AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
             IHG+++R        +  +LVDMYAKCG +  A+ +FD+ P K+L  +  MI+GY MHG
Sbjct: 793  EIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHG 852

Query: 584  LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
               EA++ F  ++  GI+PD  +F+ ILNACSH+GL+NEG + F  M ++  V+P +EH+
Sbjct: 853  FGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHY 912

Query: 644  GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
             CVV+LL+R GNL +A + I +MP  PD  I G LLS C   ++ +LAE ++EH+ +LEP
Sbjct: 913  ACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEP 972

Query: 704  DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHP 763
            DN   YV L+N YA + +W EV ++R  M+++G ++NPGCSWI++G + ++FVA +  HP
Sbjct: 973  DNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHP 1032

Query: 764  KTEEIYATLALLGMHVR 780
            + + I   L  L M ++
Sbjct: 1033 QAKRIDVLLRKLTMQMQ 1049


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/704 (32%), Positives = 374/704 (53%), Gaps = 86/704 (12%)

Query: 112 FARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFV 171
           F R+ YV T L+ FY K   +D A  +F  L  K+  +W  +I    ++G S  +L  F 
Sbjct: 179 FDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFY 238

Query: 172 EMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCG 231
           ++ E  V PD ++L  VL AC  L ++  G+ +H ++L+ G +    + + LID Y KCG
Sbjct: 239 QLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCG 298

Query: 232 DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
            +  A K+FDGM  +N+++W +++ GY QN L++EA+ +F  M   G++P   + +SIL+
Sbjct: 299 RVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILT 358

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           + A+L AL+ G Q HA  +                   K  L                  
Sbjct: 359 SCASLHALEFGTQVHAYTI-------------------KANL------------------ 381

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
                        +D  V +S++DMYAKC+ +  A++VF+     DVVL+N ++  Y+ L
Sbjct: 382 ------------GNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRL 429

Query: 412 GRSGE---ASRLFYQMQLEGISPNIISWNSVI--------LGFLR--NGQMNE------- 451
           G   E   A  +F+ M+   I P+++++ S++        LG  +  +G M +       
Sbjct: 430 GTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDI 489

Query: 452 ---------------AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
                           KD  L    + V+ +L+ W ++ SG  Q S   EA+  F E+  
Sbjct: 490 FAGSALIAVYSNCYCLKDSRLVFDEMKVK-DLVIWNSMFSGYVQQSENEEALNLFLELQL 548

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
           +  +P   T    ++A  ++ASL+ G+  H  L++  L     I  +L+DMYAKCG+   
Sbjct: 549 SRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPED 608

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A + FD + S+++  +N++IS YA HG   +AL + + +  +GI+P+ ITF  +L+ACSH
Sbjct: 609 AHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSH 668

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
           AGLV +GL+ F  M     ++P  EH+ C+V+LL R G L+EA  +I  MP  P A +  
Sbjct: 669 AGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWR 727

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           SLLS C K+   ELAEY +E  +  +P + G++  LSN YA+ G W +  +VR+ MK +G
Sbjct: 728 SLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEG 787

Query: 737 LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           + K PG SWI+I +E+H+F++ D+SH K  +IY  L  L + +R
Sbjct: 788 VVKEPGRSWIEINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIR 831



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 156/535 (29%), Positives = 251/535 (46%), Gaps = 61/535 (11%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
           I   +L  C     +  G+QIHA IL+ G    ++  +   L+  Y KC  +  A +LF 
Sbjct: 251 ILSTVLSACSILPFLEGGKQIHAHILRYGH--EKDASLMNVLIDSYVKCGRVRAAHKLFD 308

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
            +  KN+ SW  ++    +  L ++A+  F  M + G+ PD F   ++L +C +L  + F
Sbjct: 309 GMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEF 368

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G  VH Y +K       +V +SLIDMY KC  L EARKVFD   A +VV +N+MI GY +
Sbjct: 369 GTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSR 428

Query: 261 NGLNEE---AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
            G   E   A+ +F++M    + P+ ++  S+L ASA+L +L   KQ H +    G+ LD
Sbjct: 429 LGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLD 488

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS------------ 365
              GS++I  YS    L+D+ +VF  M  +D+V WN + + YVQ  ++            
Sbjct: 489 IFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQL 548

Query: 366 -----------DVVVAS-----------------------------SIVDMYAKCERIDN 385
                      D+V A+                             +++DMYAKC   ++
Sbjct: 549 SRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPED 608

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A + F+S   RDVV WN+++++YA+ G   +A ++  +M  EGI PN I++  V+     
Sbjct: 609 AHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSH 668

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
            G + +    F  M   G++P    +  ++S L +    NEA    ++M     KP+   
Sbjct: 669 AGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNEARELIEKM---PTKPAAIV 725

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
               LS C    ++          I  D    +   T L ++YA  G    AK+V
Sbjct: 726 WRSLLSGCAKAGNVELAEYAAEMAILSD-PKDSGSFTLLSNIYASKGMWTDAKKV 779



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 145/558 (25%), Positives = 258/558 (46%), Gaps = 93/558 (16%)

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           +   VHG ++  G +   ++++ L+++Y + G +  ARKVF+ M  RN+V W++M+    
Sbjct: 62  YHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACN 121

Query: 260 QNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGK----QAHAVAVINGM 314
            +G  EE++ VF +        P    ++S + A + LD    G+    Q  +  V +  
Sbjct: 122 HHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDG--SGRWMVFQLQSFLVKSRF 179

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS--------- 365
           + D  +G+ +I+FY K G ++ A +VF  + E+  VTW  +I+  V+ G+S         
Sbjct: 180 DRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239

Query: 366 --------DVVVASSIVDMYAKCERIDNAKQVFNSIIL----RDVVLWNTLLAAYADLGR 413
                   D  + S+++   +    ++  KQ+   I+     +D  L N L+ +Y   GR
Sbjct: 240 LMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGR 299

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
              A +LF  M     + NIISW +++ G+ +N    EA ++F  M   G++P++   ++
Sbjct: 300 VRAAHKLFDGMP----NKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSS 355

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +                                   L++C  + +L  G  +H Y I+ +
Sbjct: 356 I-----------------------------------LTSCASLHALEFGTQVHAYTIKAN 380

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE---ALA 590
           L   + +  SL+DMYAKC  + +A++VFDI  + ++ ++NAMI GY+  G   E   AL 
Sbjct: 381 LGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALN 440

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG------ 644
           +F +++ + I P  +TF ++L A   A L + GL          Q+   M  FG      
Sbjct: 441 IFHDMRFRLIRPSLLTFVSLLRAS--ASLTSLGL--------SKQIHGLMFKFGLNLDIF 490

Query: 645 ---CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL-LQ 700
               ++ + S C  L ++  V   M    D  I  S+ S  V+ +E E  E ++  L LQ
Sbjct: 491 AGSALIAVYSNCYCLKDSRLVFDEMKV-KDLVIWNSMFSGYVQQSENE--EALNLFLELQ 547

Query: 701 LEPDNPGNYVALSNAYAA 718
           L  D P  +  +    AA
Sbjct: 548 LSRDRPDEFTFVDMVTAA 565


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/642 (33%), Positives = 337/642 (52%), Gaps = 84/642 (13%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A +LF  +   +  + + +I      GL  +A+  +  ++  G+ P N V   V KACGA
Sbjct: 85  AQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGA 144

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
            G     + VH   ++ G     F+ ++LI  YGKC  +E AR+VFD ++ ++VV+W SM
Sbjct: 145 SGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSM 204

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
              YV  GL    + VF EM   GV+P  V+++SIL A + L  L  G+  H  AV +GM
Sbjct: 205 SSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGM 264

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIV 374
             +  + S++++ Y++   ++ A +VF  M  RD+V+WN ++ +Y  + + D  +A    
Sbjct: 265 IENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLA---- 320

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
                                                        LF QM  +G+  +  
Sbjct: 321 ---------------------------------------------LFSQMSSKGVEADEA 335

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           +WN+VI G + NGQ  +A +M  +MQ+LG +PN I                         
Sbjct: 336 TWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQI------------------------- 370

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
                     TI+  L AC+ + SLR G+ +H Y+ RH L      +T+LV MYAKCG++
Sbjct: 371 ----------TISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDL 420

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
           + ++ VFD+   K++  +N MI   AMHG   E L LF+++ Q GI P+S+TFT +L+ C
Sbjct: 421 NLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGC 480

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
           SH+ LV EGL++F  M  DH V+P   H+ C+V++ SR G L EA   I  MP +P A  
Sbjct: 481 SHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASA 540

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
            G+LL  C      ELA+  +  L ++EP+NPGNYV+L N    +  W+E S+ R +MKE
Sbjct: 541 WGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKE 600

Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLG 776
           +G+ K PGCSW+Q+G+ +H FV  D+++ ++++IY  L  LG
Sbjct: 601 RGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELG 642



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/447 (24%), Positives = 204/447 (45%), Gaps = 62/447 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+ +      EA+ L   ++ R  +    ++  + + C    D    +++H   ++ G 
Sbjct: 104 ISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCG- 162

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               + ++   L+  Y KC  ++ A R+F  L VK+V SW ++       GL    L  F
Sbjct: 163 -MMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVF 221

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EM  +GV P++  L ++L AC  L  +  GRA+HG+ ++ G    VFV S+L+ +Y +C
Sbjct: 222 CEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARC 281

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGY-------------------------------- 258
             +++AR VFD M  R+VV+WN ++  Y                                
Sbjct: 282 LSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVI 341

Query: 259 ---VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
              ++NG  E+A+ +  +M   G +P +++++S L A + L++L  GK+ H     + + 
Sbjct: 342 GGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLI 401

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN----------------LLIASY 359
            D    ++++  Y+K G L  +  VF  +  +D+V WN                LL  S 
Sbjct: 402 GDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESM 461

Query: 360 VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNS-----IILRDVVLWNTLLAAYADLGR 413
           +QSG + + V  + ++   +    ++   Q+FNS     ++  D   +  ++  ++  GR
Sbjct: 462 LQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGR 521

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVI 440
             EA     +M +E   P   +W +++
Sbjct: 522 LHEAYEFIQRMPME---PTASAWGALL 545



 Score = 48.5 bits (114), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 5/112 (4%)

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           +P+ +   L+      G+  +A+++FD  P  +    + +IS +   GL  EA+ L+ +L
Sbjct: 64  IPSHLGLRLLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASL 123

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEH 642
           + +GI P +  F  +  AC  +G  +   E+       GM SD  +  ++ H
Sbjct: 124 RARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIH 175


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/792 (29%), Positives = 416/792 (52%), Gaps = 92/792 (11%)

Query: 76  QIGPEIYGELLQGCVYKRDMYTG---QQIHARILKNGDFFARNEYVETKLVVFYAKCDAL 132
           +IG E+ G+LLQ  +   ++ T    ++IHA I+  G F   + ++   L+  Y+K +  
Sbjct: 48  KIGREL-GKLLQ--LPSPNILTSHYYKKIHAHIVVLG-FHQHDVFLVNTLLHAYSKMNLQ 103

Query: 133 DVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE-MQEDGVSPDNFVLPNVLKA 191
             A +LF  +  +N+ +W++++ +  + G S +AL+ F   M+     P+ ++L +V++A
Sbjct: 104 SDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRA 163

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C  LG +     +HG+V+K GF   V+V +SLID Y K G ++EAR +FDG+  +  V W
Sbjct: 164 CTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTW 223

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
            ++I GY + G +E ++++F +M    V P R  ++S+LSA + L+ L+ GKQ H   + 
Sbjct: 224 TAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLR 283

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------- 363
            G ++D  + + II+FY K   ++    +F+R+V++D+V+W  +IA  +Q+         
Sbjct: 284 RGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDL 343

Query: 364 --------------------------------------------QSDVVVASSIVDMYAK 379
                                                        +D  V + ++DMYAK
Sbjct: 344 FVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAK 403

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW--- 436
           C+ + NA++VF+ +   +VV +N ++  Y+   +  EA  LF +M+L    P ++++   
Sbjct: 404 CDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSL 463

Query: 437 ----------------NSVILGF---LRNGQMNEAKDMFLQMQSLG---------VQPNL 468
                           + +I+ F   L +   +   D++ +   +G            ++
Sbjct: 464 LGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDI 523

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           + W  + SG +Q     E++  ++++  + +KP+  T    ++A +++ASLR+G+  H  
Sbjct: 524 VVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQ 583

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +I+  L     +  SLVDMYAKCG+I ++ + F  +  +++  +N+MIS YA HG A +A
Sbjct: 584 VIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKA 643

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L +F+ +  +G+ P+ +TF  +L+ACSHAGL++ G   F  M S   ++P ++H+ C+V+
Sbjct: 644 LEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESM-SKFGIEPGIDHYACMVS 702

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL R G + EA   +  MP  P A +  SLLS C  S   EL  Y +E  +  +P + G+
Sbjct: 703 LLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTYAAEMAISCDPADSGS 762

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           Y+ LSN +A+ G W  V  VR+ M    + K PG SWI++  E+H F+A D +H  +  I
Sbjct: 763 YILLSNIFASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNNEVHRFIARDTAHRDSTLI 822

Query: 769 YATLALLGMHVR 780
              L  L + ++
Sbjct: 823 SLVLDNLILQIK 834



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 159/507 (31%), Positives = 242/507 (47%), Gaps = 59/507 (11%)

Query: 61  REAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           R  V L    + R   + P+ Y    +L  C     +  G+QIH  +L+ G  F  +  V
Sbjct: 235 RSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRG--FDMDVSV 292

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
              ++ FY KC  +    +LF RL  K+V SW  +I    +      A+  FVEM   G 
Sbjct: 293 VNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGW 352

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
            PD F   +VL +CG+L  +  GR VH Y +KV  D   FV + LIDMY KC  L  ARK
Sbjct: 353 KPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARK 412

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VFD + A NVV++N+MI GY +     EA+ +F EM L    PT ++  S+L  S++L  
Sbjct: 413 VFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFL 472

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           L+   Q H + +  G+ LD+  GS++I+ YSK   + DA +VF  + +RDIV WN + + 
Sbjct: 473 LELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSG 532

Query: 359 YVQS----------------------------------------GQ------------SD 366
           Y Q                                         GQ             D
Sbjct: 533 YSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDD 592

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
             V +S+VDMYAKC  I+ + + F+S   RD+  WN++++ YA  G + +A  +F +M +
Sbjct: 593 PFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIM 652

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
           EG+ PN +++  ++      G ++     F  M   G++P +  +  ++S L +     E
Sbjct: 653 EGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSKFGIEPGIDHYACMVSLLGRAGKIYE 712

Query: 487 AILFFQEMLETGIKPSTTTITCALSAC 513
           A  F ++M    IKP+       LSAC
Sbjct: 713 AKEFVKKM---PIKPAAVVWRSLLSAC 736



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 172/363 (47%), Gaps = 11/363 (3%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPE---IYGELLQGCVYKRDMYTGQQIH 102
           SY   I   S++ ++ EA+DL  EM+     + P     +  LL        +    QIH
Sbjct: 424 SYNAMIEGYSRQDKLVEALDLFREMR---LSLSPPTLLTFVSLLGLSSSLFLLELSSQIH 480

Query: 103 ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL 162
             I+K G   + + +  + L+  Y+KC  +  A  +F  +  +++  W A+     +   
Sbjct: 481 CLIIKFG--VSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLE 538

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
           +E++L  + ++Q   + P+ F    V+ A   +  +  G+  H  V+K+G D   FV +S
Sbjct: 539 NEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNS 598

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L+DMY KCG +EE+ K F     R++  WNSMI  Y Q+G   +A+ VF  M +EGV+P 
Sbjct: 599 LVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPN 658

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
            V+   +LSA ++   LD G          G+E      + +++   + G + +A+    
Sbjct: 659 YVTFVGLLSACSHAGLLDLGFHHFESMSKFGIEPGIDHYACMVSLLGRAGKIYEAKEFVK 718

Query: 343 RM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
           +M ++   V W  L+++   SG   V + +   +M   C+  D+   +  S I     +W
Sbjct: 719 KMPIKPAAVVWRSLLSACRVSGH--VELGTYAAEMAISCDPADSGSYILLSNIFASKGMW 776

Query: 402 NTL 404
            ++
Sbjct: 777 ASV 779


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 242/762 (31%), Positives = 399/762 (52%), Gaps = 79/762 (10%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L+ C  +  +  G+ IH  I   G     +  V T +V FY KC  ++ A  +F  +  
Sbjct: 66  VLKACAAQNAVERGKSIHRSI--QGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSD 123

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++V  W A++      G  E+A++   EM  + + P++  +  +L AC     +  GR V
Sbjct: 124 RDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGV 183

Query: 205 HGYVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           HGY L+ G FD    VA++LI  Y +  D+     +FD M+ RN+V+WN+MI GY   G 
Sbjct: 184 HGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGD 242

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
             +A+ +F +M ++ V+   V++   + A A L +L  GKQ H +A+      D  + ++
Sbjct: 243 YFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNA 302

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------QSDVVVAS 371
           ++N YS  G LE +  +F  +  RD   WN +I++Y   G            QS+ V   
Sbjct: 303 LLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKD 362

Query: 372 --SIVDMYAKCERIDNA--------KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
             ++V M + CE + +           V  S +  D  L N LL+ Y +L       ++F
Sbjct: 363 ERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIF 422

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
            +M+  G+  +IISWN++IL   RN    +A ++F +M+   ++PN  T  ++++     
Sbjct: 423 DRMK--GV--DIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDV 478

Query: 482 SC---------------------------------GNEA-------------ILFFQEML 495
           +C                                 G+EA             ++ +  M+
Sbjct: 479 TCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMI 538

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH--DLCLPTPIVTSLVDMYAKCGN 553
               +P++ TI   LS+ T +A+L  G+++H Y+ R    L L   +  + + MYA+CG+
Sbjct: 539 XKA-EPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGS 597

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +  A+ +F   P + +  +NAMI+GY M+G   +A+  F  + + G  P+ +TF ++L+A
Sbjct: 598 LQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSA 657

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           CSH+G +  GL+LF  M  D  V P + H+ C+V+LL+R G +DEA   I +MP +PDA 
Sbjct: 658 CSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDAS 717

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           +  +LLS+C   ++ + A+ I E L +LEP N GNYV LSN YA +G W EV ++R  +K
Sbjct: 718 VWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLK 777

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           EKGLRK PG SWI +  ++H F A DRSHP++++IYA L++L
Sbjct: 778 EKGLRKPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSIL 819



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 162/613 (26%), Positives = 286/613 (46%), Gaps = 108/613 (17%)

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
           ++++K+   W ++I     +   +  L  + +M+  GV P+N  LP VLKAC A   V  
Sbjct: 19  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 78

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+++H  +        V V ++++D Y KCG +E+AR VFD M  R+VV WN+M+ GYV 
Sbjct: 79  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 138

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV- 319
            G  EEA+ +  EM  E + P   ++ ++L A      L  G+  H   + NGM   N  
Sbjct: 139 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPH 198

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ--------------- 364
           + +++I FY +   +    ++F  MV R+IV+WN +I+ Y   G                
Sbjct: 199 VATALIGFYLRFD-MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDE 257

Query: 365 -------------------------------------SDVVVASSIVDMYAKCERIDNAK 387
                                                 D+ + +++++MY+    ++++ 
Sbjct: 258 VKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSH 317

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN--------------- 432
           Q+F S+  RD  LWN++++AYA  G   EA  LF +MQ EG+  +               
Sbjct: 318 QLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELA 377

Query: 433 --IISWNSVILGFLRNGQMNEAK------DMFLQMQSL-GVQP--------NLITWTTLI 475
             ++   S+    +++G   +A        M+ ++  +  VQ         ++I+W T+I
Sbjct: 378 SGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMI 437

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
             L +N+   +A   F+ M E+ IKP++ TI   L+AC DV  L  GR+IHGY+++H + 
Sbjct: 438 LALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIE 497

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           +  P+ T+L DMY  CG+   A+ +F+  P ++L  +NAMI                   
Sbjct: 498 INQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIX------------------ 539

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF-SDHQVKPSMEHFGCVVNLLSRCG 654
                +P+S+T  N+L++ +H   + +G  L   +      +   +      + + +RCG
Sbjct: 540 ---KAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCG 596

Query: 655 NLDEALRVILTMP 667
           +L  A  +  T+P
Sbjct: 597 SLQSAENIFKTLP 609



 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 158/607 (26%), Positives = 280/607 (46%), Gaps = 77/607 (12%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA+ L+ EM   N +        LL  C    ++  G+ +H   L+NG  F  N +V T 
Sbjct: 144 EAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNG-MFDSNPHVATA 202

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+ FY + D + V   LF  + V+N+ SW A+I     VG   KAL  FV+M  D V  D
Sbjct: 203 LIGFYLRFD-MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFD 261

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
              +   ++AC  LG +  G+ +H   +K  F   +++ ++L++MY   G LE + ++F+
Sbjct: 262 CVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFE 321

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL-DALD 300
            +  R+   WNSMI  Y   G +EEA+ +F  M  EGV+    +V  +LS    L   L 
Sbjct: 322 SVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLL 381

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           +GK  HA  + +GM +D  LG+++++ Y+++  +E  + +F RM   DI++WN +I +  
Sbjct: 382 KGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALA 441

Query: 361 QSG-------------QSDVVVAS-SIVDMYAKCERID---------------------- 384
           ++              +S++   S +I+ + A CE +                       
Sbjct: 442 RNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQP 501

Query: 385 ----------------NAKQVFNSIILRDVVLWNTL--------------LAAYADLGRS 414
                            A+ +F     RD++ WN +              L+++  L   
Sbjct: 502 LRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIXKAEPNSVTIINVLSSFTHLATL 561

Query: 415 GEASRLFYQMQLEGIS--PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
            +   L   +   G S   ++   N+ I  + R G +  A+++F  +     + N+I+W 
Sbjct: 562 PQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLP----KRNIISWN 617

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
            +I+G   N  G++A+L F +MLE G +P+  T    LSAC+    +  G  +   +++ 
Sbjct: 618 AMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQD 677

Query: 533 DLCLPTPIVTS-LVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVEALA 590
               P  +  S +VD+ A+ G I +A+   D  P   +  V+ A++S    +  A +A  
Sbjct: 678 FNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKT 737

Query: 591 LFKNLQQ 597
           +F+ L +
Sbjct: 738 IFEKLDK 744


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/635 (33%), Positives = 355/635 (55%), Gaps = 41/635 (6%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D+    ++L++C  L     G+ VH + LK GF G  FV + L+ MYG+ G L++A  VF
Sbjct: 61  DSSTYASLLESCRTLN---LGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVF 117

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
             M  RN+ +W +++  +V +G  EEA+ +F ++ L+ +         +L     L  L+
Sbjct: 118 VKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLE 177

Query: 301 EGKQAH------------AVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRM--V 345
            G+Q H            A+ + +G  + NV+  +++I  Y + G +E A+ +F +M  V
Sbjct: 178 LGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELV 237

Query: 346 ERDIVTWNLLIASYV------------------QSGQSDVVVASSIVDMYAKCERIDNAK 387
            +D ++WN +I+ Y                   +  ++D     S++   A    +   K
Sbjct: 238 GKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGK 297

Query: 388 QVFNSIILRDVVLWNTLLA-AYADLGRSGEASRLFYQMQLEGISP-NIISWNSVILGFLR 445
           +V    ++R +  WNT +  A  ++    E  +   Q+  +G++  +  +WN +I G+  
Sbjct: 298 EVHAQAVVRGL-HWNTFVGGALVEMYSKCEDLKA-AQLAFDGVTERDTATWNVLISGYAC 355

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
             Q+   +++  +M+  G +PN+ TW  +ISG  +N     A+  F EM  + ++P   T
Sbjct: 356 CNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYT 415

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           +   L AC  +A++  G+ +H + IR    L   I  +LVDMYAKCG+I  A +V++   
Sbjct: 416 VGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRIS 475

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
           +  L   NAM++ YAMHG   E +ALF+N+   G  PD +TF ++L++C HAG V  G E
Sbjct: 476 NPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHE 535

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
            F  + + + V PS++H+ C+V+LLSR G LDEA  ++  +P  PD+ + G+LL  CV  
Sbjct: 536 FF-DLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIW 594

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
              EL E  +E L++LEP+N GNYV L+N YA +GRW+++ + R ++K++G+ K+PGCSW
Sbjct: 595 GNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSW 654

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           I+  E++HVF++CD+SH KTE+IY TL  L  H+R
Sbjct: 655 IEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMR 689



 Score =  236 bits (601), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/568 (27%), Positives = 277/568 (48%), Gaps = 75/568 (13%)

Query: 68  TEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYA 127
           T +   + QI    Y  LL+ C   R +  G+Q+HA  LK G  F  +E+VETKL+  Y 
Sbjct: 51  THLSLLDKQIDSSTYASLLESC---RTLNLGKQVHAHTLKTG--FHGHEFVETKLLQMYG 105

Query: 128 KCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPN 187
           +   LD A+ +F ++  +N++SW AI+ ++   G  E+AL  F ++Q D +  + FV P 
Sbjct: 106 RFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPV 165

Query: 188 VLKACGALGWVGFGRAVHGYVLK------------VGFD-GCVFVASSLIDMYGKCGDLE 234
           VLK CG L  +  GR +HG V+K             GF    V   +++I  Y + G++E
Sbjct: 166 VLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVE 225

Query: 235 EARKVFDGM--IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL-EGVEPTRVSVTSILS 291
           +A+++FD M  + ++ ++WNSMI GY  N L +EA+ +F ++ + EG+E    ++ S+L+
Sbjct: 226 KAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLA 285

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           A A++ +L  GK+ HA AV+ G+  +  +G +++  YSK   L+ A++ F  + ERD  T
Sbjct: 286 ACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTAT 345

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLAA 407
           WN+LI+                   YA C +++N + +   +       +V  WN +++ 
Sbjct: 346 WNVLISG------------------YACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISG 387

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK-------------- 453
           + + G +  A RLF +MQ   + P+I +   ++    R   +   K              
Sbjct: 388 HVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELD 447

Query: 454 --------DMF---------LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
                   DM+         +Q+ +    PNL++   +++    +  G+E I  F+ ML 
Sbjct: 448 VHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLG 507

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
            G +P   T    LS+C    ++  G      +  +++       T +VD+ ++ G + +
Sbjct: 508 NGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDE 567

Query: 557 AKRVFDISPSKELPV-YNAMISGYAMHG 583
           A  +    P K   V + A++ G  + G
Sbjct: 568 AYELVKKIPRKPDSVMWGALLGGCVIWG 595



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 152/332 (45%), Gaps = 40/332 (12%)

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
           G +L  C     +  G+++HA+ +  G     N +V   LV  Y+KC+ L  A   F  +
Sbjct: 281 GSVLAACADMASLRRGKEVHAQAVVRG--LHWNTFVGGALVEMYSKCEDLKAAQLAFDGV 338

Query: 143 RVK-----------------------------------NVFSWAAIIGLNCRVGLSEKAL 167
             +                                   NV++W  II  +   G +E AL
Sbjct: 339 TERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELAL 398

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
             F EMQ   + PD + +  +L AC  L  +  G+ VH + ++ G++  V + ++L+DMY
Sbjct: 399 RLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMY 458

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            KCG ++ A +V++ +   N+V+ N+M+  Y  +G  +E I +F  M   G  P  V+  
Sbjct: 459 AKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFL 518

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S+LS+  +  A++ G +   +     +       + I++  S+ G L++A  +  ++  +
Sbjct: 519 SVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRK 578

Query: 348 -DIVTWNLLIASYVQSGQSDV--VVASSIVDM 376
            D V W  L+   V  G  ++  + A S++++
Sbjct: 579 PDSVMWGALLGGCVIWGNVELGEIAAESLIEL 610


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/703 (31%), Positives = 368/703 (52%), Gaps = 89/703 (12%)

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
           +++AL  F+ ++  G   D   L  VLK CG L     G+ VH   +K GF   V V +S
Sbjct: 73  NKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTS 132

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L+DMY K   +E+  +VFD M  +NVV+W S++ GY QNGLNE+A+++F +M LEG++P 
Sbjct: 133 LVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPN 192

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
             +  ++L   A   A+++G Q H + + +G++    +G+S++N YSK  ++ DA+ VF 
Sbjct: 193 PFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFD 252

Query: 343 RMVERDIVTWNLLIASY------------------------------------------- 359
            M  R+ V+WN +IA +                                           
Sbjct: 253 SMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSF 312

Query: 360 --------VQSGQS-DVVVASSIVDMYAKCERIDNAKQVFNSII-LRDVVLWNTLLAAYA 409
                   +++G   D+ + ++++  Y+KC  ID+A ++F  +  +++VV W  +++ Y 
Sbjct: 313 AKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYV 372

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVILG--------------------------- 442
             GR+  A  LF QM+ EG+ PN  ++++++                             
Sbjct: 373 QNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGTA 432

Query: 443 ----FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
               + + G  NEA  +F     L  + +++ W+ ++SG  Q      A+  F ++ + G
Sbjct: 433 LSDSYSKIGDANEAAKIF----ELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEG 488

Query: 499 IKPSTTTITCALSACT-DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           ++P+  T +  L+AC    AS+  G+  H   I+        + ++LV MYAK GNI  A
Sbjct: 489 VEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESA 548

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
             VF     ++L  +N+MISGYA HG   ++L +F+ ++ K ++ D ITF  +++AC+HA
Sbjct: 549 NEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHA 608

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           GLVNEG   F  M  D+ + P+MEH+ C+V+L SR G L++A+ +I  MP    A I  +
Sbjct: 609 GLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRT 668

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           LL+ C      +L E  +E L+ L+P +   YV LSN YA +G W E ++VR +M  K +
Sbjct: 669 LLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKV 728

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           +K  G SWI++  +   F+A D SHP+++ IY  L  L + ++
Sbjct: 729 KKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLK 771


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/667 (31%), Positives = 344/667 (51%), Gaps = 86/667 (12%)

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI-ARNVVAWNSMIVGY 258
            G+ +H  ++ +G    + +  SLI++Y  C   + A+ VF  +    ++  WN ++   
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272

Query: 259 VQNGLNEEAIRVFYEMT-LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
            +N +  E + VF+ +     ++P   +  S+L A + L  +  GK  H   + +G  +D
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 332

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS------------ 365
            V+ SS +  Y+K  + EDA  +F  M ERD+ +WN +I+ Y Q GQ             
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 366 ----------------------------------------DVVVASSIVDMYAKCERIDN 385
                                                   D  V+S++VDMY KC  ++ 
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           AK+VF  I  ++VV WN+++A Y+  G S     LF +M  EGI P + + +S+++   R
Sbjct: 453 AKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR 512

Query: 446 NGQMNEAK----------------------DMFLQMQSLGV---------QPNLITWTTL 474
           +  +   K                      D++ +  ++G          + N+++W  +
Sbjct: 513 SVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVM 572

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           ISG  +     EA++ F +M + G+KP   T T  L AC+ +A L  G+ IH ++I   L
Sbjct: 573 ISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKL 632

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
            +   ++ +L+DMYAKCG + +A  +F+  P ++   + +MI+ Y  HG A EAL LF+ 
Sbjct: 633 EINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEK 692

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           +QQ    PD +TF  IL+ACSHAGLV+EG   F  M +++  KP++EH+ C+++LL R G
Sbjct: 693 MQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVG 752

Query: 655 NLDEALRVILTMP-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
            L EA  ++   P    D  ++ +L S C    + +L E I   L++ +PD+P  Y+ LS
Sbjct: 753 RLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILS 812

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           N YA+  +W+EV +VR  +KE GL+KNPGCSWI++G+ +H FV  D+SHP+ + IY  ++
Sbjct: 813 NMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYECMS 872

Query: 774 LLGMHVR 780
           +L  HV 
Sbjct: 873 ILASHVE 879



 Score =  233 bits (593), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 160/532 (30%), Positives = 258/532 (48%), Gaps = 58/532 (10%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  +L+ C     +  G+ +H  ++K+G  FA +  V +  V  YAKC+  + A +LF  
Sbjct: 301 YPSVLKACSGLGRVGYGKMVHTHVIKSG--FAMDVVVMSSAVGMYAKCNVFEDAIKLFDE 358

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  ++V SW  +I    + G  EKAL  F EM+  G  PD+  L  V+ +C  L  +  G
Sbjct: 359 MPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERG 418

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H  +++ GF    FV+S+L+DMYGKCG LE A++VF+ +  +NVV+WNSMI GY   
Sbjct: 419 KEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLK 478

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G ++  I +F  M  EG+ PT  +++SIL A +    L  GK  H   + N +E D  + 
Sbjct: 479 GDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVN 538

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------Q 364
           SS+I+ Y K G +  AE VF  M + ++V+WN++I+ YV+ G                 +
Sbjct: 539 SSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVK 598

Query: 365 SDVVVASSI-----------------------------------VDMYAKCERIDNAKQV 389
            D +  +S+                                   +DMYAKC  +D A  +
Sbjct: 599 PDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHI 658

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           FN +  RD V W +++AAY   G++ EA +LF +MQ     P+ +++ +++      G +
Sbjct: 659 FNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLV 718

Query: 450 NEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           +E    F QM    G +P +  ++ LI  L +     EA    Q   +  I+     ++ 
Sbjct: 719 DEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPD--IREDVGLLST 776

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
             SAC     L  G  I   LI  D   P+  +  L +MYA      + ++V
Sbjct: 777 LFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYII-LSNMYASVKKWDEVRKV 827



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 127/412 (30%), Positives = 223/412 (54%), Gaps = 17/412 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+ + IS   ++ Q  +A++L  EMK   F+        ++  C    D+  G++IH  +
Sbjct: 366 SWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMEL 425

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +++G  FA + +V + LV  Y KC  L++A  +F +++ KNV SW ++I      G S+ 
Sbjct: 426 VRSG--FALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKS 483

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
            +  F  M E+G+ P    L ++L AC     +  G+ +HGY+++   +  +FV SSLID
Sbjct: 484 CIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLID 543

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y KCG++  A  VF  M   NVV+WN MI GYV+ G   EA+ +F +M   GV+P  ++
Sbjct: 544 LYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAIT 603

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
            TS+L A + L  L++GK+ H   + + +E++ V+  ++++ Y+K G +++A  +F+++ 
Sbjct: 604 FTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP 663

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           ERD V+W  +IA+Y   GQ     A   + ++ K ++ D            D V +  +L
Sbjct: 664 ERDFVSWTSMIAAYGSHGQ-----AFEALKLFEKMQQSDAKP---------DKVTFLAIL 709

Query: 406 AAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMF 456
           +A +  G   E    F QM  E G  P +  ++ +I    R G++ EA ++ 
Sbjct: 710 SACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEIL 761



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/461 (28%), Positives = 224/461 (48%), Gaps = 96/461 (20%)

Query: 298 ALDE--GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER-DIVTWNL 354
           AL+E  GK  H   V  G++ +  L  S+IN Y    L + A++VF  +    DI  WN 
Sbjct: 208 ALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNG 267

Query: 355 LIAS----------------------------------------------------YVQS 362
           L+A+                                                     ++S
Sbjct: 268 LMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKS 327

Query: 363 GQS-DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
           G + DVVV SS V MYAKC   ++A ++F+ +  RDV  WN +++ Y   G+  +A  LF
Sbjct: 328 GFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELF 387

Query: 422 YQMQLEGISPNIISWNSVIL--------------------------GFLRN--------- 446
            +M++ G  P+ ++  +VI                           GF+ +         
Sbjct: 388 EEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKC 447

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G +  AK++F Q+Q    + N+++W ++I+G +        I  F+ M E GI+P+ TT+
Sbjct: 448 GCLEMAKEVFEQIQ----RKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTL 503

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
           +  L AC+   +L+ G+ IHGY+IR+ +     + +SL+D+Y KCGNI  A+ VF   P 
Sbjct: 504 SSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPK 563

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
             +  +N MISGY   G  +EAL +F ++++ G+ PD+ITFT++L ACS   ++ +G E+
Sbjct: 564 TNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEI 623

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
                 + +++ +    G ++++ ++CG +DEAL +   +P
Sbjct: 624 H-NFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP 663


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 248/814 (30%), Positives = 407/814 (50%), Gaps = 104/814 (12%)

Query: 22  PLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEI 81
           PL    TH  +++   N    LY S+   I + SK     +A++L   +     +     
Sbjct: 48  PLLQIHTHFLQIK---NPSLILYNSF---IKAYSKFHHFHKAINLYHTILKIGLKPDKFT 101

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  +L+ C    D + G  I+  I+ NG     + Y+ T L+  + K   LD A  +F +
Sbjct: 102 FNFVLKACTSALDFHEGVNIYKDIVFNG--LECDVYIGTSLIDMFCKMGCLDNARNVFDK 159

Query: 142 LRVKNVFSWAAIIGLNCRVGLSE-----KALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
           + VK+   W A+I      GLS+     +AL  F  MQ +G   D   + N+  A   LG
Sbjct: 160 MPVKDGVCWNAMIS-----GLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLG 214

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
            VG  +++HGYV++     C  V++SLIDMY KCGD+  A++VFD M  R+ V+W +M+ 
Sbjct: 215 DVGCCKSIHGYVVRRSI--CGVVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMA 272

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           GYV+NG   E +++ ++M    V+  +V+V + L   A +  L++GK+ +  A+  G+  
Sbjct: 273 GYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMS 332

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------- 363
           D V+ + I+  Y+K G L+ A  +F  +  RD+V W+  +++ V++G             
Sbjct: 333 DIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQ 392

Query: 364 ---------------------------------------QSDVVVASSIVDMYAKCERID 384
                                                  +SD+ + +++V MY + E   
Sbjct: 393 YEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFT 452

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------IISWNS 438
            A  +FN + ++D+V+WNTL+  +   G    A  +F ++QL GI P+      + S  +
Sbjct: 453 YAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACA 512

Query: 439 VI----LGFLRNGQMNEA------------KDMFLQMQSLGVQPNL----------ITWT 472
           ++    LG   +G + ++             DM+ +  SL     L          ++W 
Sbjct: 513 IMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWN 572

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
            +I+G   N   NEAI  F+ M    ++P+  T    L A + ++ LR   A H  +IR 
Sbjct: 573 VMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCIIRM 632

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
                T I  SL+DMYAKCG +  +++ F    +K+   +NAM+S YAMHG    A+ALF
Sbjct: 633 GFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALF 692

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
             +Q+  +  DS+++ ++L+AC H+GL+ EG ++F  M   H V+PSMEH+ C+V+LL  
Sbjct: 693 SVMQESNVRVDSVSYISVLSACRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGC 752

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G  DE L ++  M  +PDA + G+LL+ C   +   L E    HLL+LEP NP ++V L
Sbjct: 753 AGLFDEVLSLLNKMTTEPDARVWGALLAACKIHSNVTLGEVAVHHLLKLEPRNPVHHVVL 812

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
           S+ YA  GRWN+  + R  +   GL+K PG SW+
Sbjct: 813 SDIYAQCGRWNDARRTRSHINNHGLKKIPGYSWV 846


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/693 (32%), Positives = 371/693 (53%), Gaps = 70/693 (10%)

Query: 112 FARNEYVETKLVVFYAKCD--ALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
           F  + +  ++L+ F        LD + ++F R+   N F W  ++    +   +EKAL+ 
Sbjct: 69  FISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLL 128

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           +  M ++ V PDN+  P V++AC        G+ +H +VLKVGFD  V+V ++LI+MY  
Sbjct: 129 YKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAV 188

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG++ +ARK+FD     + V+WNS++ GYV+ G  EEA  +F +M      P R  V S 
Sbjct: 189 CGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQM------PQRNIVAS- 241

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
                                           +S+I    K+G + +A  +F+ M E+D+
Sbjct: 242 --------------------------------NSMIVLLGKMGQVMEAWKLFNEMDEKDM 269

Query: 350 VTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNS 392
           V+W+ LI+ Y Q+G                 + D VV  S++   A    +   K +   
Sbjct: 270 VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGL 329

Query: 393 IILRD----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           +I       V L N L+  Y+  G   +A +LF        + + ISWNS+I G ++ G 
Sbjct: 330 VIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSH----NLDQISWNSMISGCMKCGS 385

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           + +A+ +F  M     + ++++W+ +ISG  Q+ C +E +  F EM    I+P  T +  
Sbjct: 386 VEKARALFDVMP----EKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVS 441

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            +SACT +A+L  G+ +H Y+ ++ L +   + T+L+DMY KCG +  A  VF+    K 
Sbjct: 442 VISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKG 501

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           +  +NA+I G A++GL   +L +F  ++  G+ P+ ITF  +L AC H GLV+EG   F 
Sbjct: 502 VSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFA 561

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
            M   H ++P+++H+GC+V+LL R G L+EA ++I +MP  PD    G+LL  C K  +T
Sbjct: 562 SMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDT 621

Query: 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           E+ E +   L++L+PD+ G +V LSN +A+ G W +V +VR +MK++G+ K PGCS I+ 
Sbjct: 622 EMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEA 681

Query: 749 GEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
              +H F+A D++HP   ++   L  +   +++
Sbjct: 682 NGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKM 714



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 216/432 (50%), Gaps = 55/432 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  +L G V K D+   + I  ++ +      RN      ++V   K   +  A +LF  
Sbjct: 210 WNSILAGYVKKGDVEEAKLIFDQMPQ------RNIVASNSMIVLLGKMGQVMEAWKLFNE 263

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  K++ SW+A+I    + G+ E+AL+ F+EM  +G+  D  V+ +VL AC  L  V  G
Sbjct: 264 MDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG 323

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM------- 254
           + +HG V+++G +  V + ++LI MY   G++ +A+K+F+G    + ++WNSM       
Sbjct: 324 KMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKC 383

Query: 255 ------------------------IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
                                   I GY Q+    E + +F+EM L  + P    + S++
Sbjct: 384 GSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVI 443

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA  +L ALD+GK  HA    NG++++ +LG+++++ Y K G +E+A  VF+ M E+ + 
Sbjct: 444 SACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVS 503

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           +WN LI     +G     +    +DM+++ +         N+ ++ + + +  +L A   
Sbjct: 504 SWNALIIGLAVNG-----LVERSLDMFSEMK---------NNGVIPNEITFMGVLGACRH 549

Query: 411 LGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
           +G   E    F  M +  GI PN+  +  ++    R G +NEA+ +   ++S+ + P++ 
Sbjct: 550 MGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKL---IESMPMAPDVA 606

Query: 470 TWTTLISGLTQN 481
           TW  L+    ++
Sbjct: 607 TWGALLGACKKH 618



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 168/351 (47%), Gaps = 37/351 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS   +     EA+ +  EM     ++   +   +L  C +   + TG+ IH  +++ G 
Sbjct: 276 ISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGI 335

Query: 111 FFARNEYVETKLVVFYA-------------------------------KCDALDVASRLF 139
               N  ++  L+  Y+                               KC +++ A  LF
Sbjct: 336 ESYVN--LQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALF 393

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +  K++ SW+A+I    +     + L  F EMQ   + PD  +L +V+ AC  L  + 
Sbjct: 394 DVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALD 453

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            G+ VH Y+ K G    V + ++L+DMY KCG +E A +VF+GM  + V +WN++I+G  
Sbjct: 454 QGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLA 513

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI--NGMELD 317
            NGL E ++ +F EM   GV P  ++   +L A  ++  +DEG+  H  ++I  +G+E +
Sbjct: 514 VNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGR-CHFASMIEKHGIEPN 572

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDV 367
                 +++   + GLL +AE +   M +  D+ TW  L+ +  + G +++
Sbjct: 573 VKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEM 623


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/659 (33%), Positives = 338/659 (51%), Gaps = 67/659 (10%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D+     +L  C  L      R+VHG +++  F   VF+ + LID+YGKCG L+ ARKVF
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 241 DGMIARNVVA-------------------------------WNSMIVGYVQNGLNEEAIR 269
           D M  RNV +                               WNSMI G+ Q+   EEA+ 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329
            F  M  +       S  S LSA + L  L  G Q H +   +   LD  +GS +I+FYS
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASS 372
           K GL+  A  VF  M E+++V+WN LI  Y Q+G                 + D V  +S
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262

Query: 373 IVDMYAKCERIDNAKQVFNSII-----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           +V   A         Q+   ++       D++L N L+  YA  GR  EA  +F +M + 
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVR 322

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
               N +S  +++ G+ ++  +  A+ MF  ++    Q ++++W  LI+G TQN    EA
Sbjct: 323 ----NAVSETTMVSGYAKSASVKAARSMFATIK----QKDIVSWNALIAGYTQNGENEEA 374

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP------IV 541
           +  F+ +    + P+  T    L+A  ++A L  GR  H ++++H     +       + 
Sbjct: 375 LGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVG 434

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
            SL+DMY KCG++ +  RVF+    K+   +N MI GYA +G  +EAL LF+ + + G  
Sbjct: 435 NSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEK 494

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
           PD +T    L ACSHAGLV EG   F  M  +H + P  +H+ C+V+LL R G L+EA  
Sbjct: 495 PDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKD 554

Query: 662 VILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721
           +I +MP  PDA +  SLLS C       L +Y++E + +++P + G YV L+N Y+  GR
Sbjct: 555 LIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGR 614

Query: 722 WNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           W +   VR +M+ +G+ K PGCSWI I   +HVF+  D+ HP+ +EIY+ L LL  H+R
Sbjct: 615 WGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSILKLLTKHMR 673



 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 173/600 (28%), Positives = 275/600 (45%), Gaps = 105/600 (17%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           + +LL  CV  R     + +H R+++    F    +++ +L+  Y KC  LD A ++F R
Sbjct: 27  FAKLLDLCVKLRSSRDARSVHGRLIQTP--FCEEVFIQNRLIDVYGKCGYLDYARKVFDR 84

Query: 142 LRVKNVFSWAAIIGLNCRVGLS-------------------------------EKALIGF 170
           +  +NVFS+ +II    R G                                 E+AL  F
Sbjct: 85  MSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWF 144

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           V M  D    +++   + L AC  L  +  G  +HG + K  +   VF+ S LID Y KC
Sbjct: 145 VRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKC 204

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +  AR+VFDGM  +NVV+WN +I  Y QNG   EA+  F  MT  G +P  V++ S++
Sbjct: 205 GLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVV 264

Query: 291 SASANLDALDEGKQAHA-VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           SA A L A  EG Q HA V   +    D +LG+++++ Y+K G + +A  VF RM  R+ 
Sbjct: 265 SACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNA 324

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
           V+                   +++V  YAK   +  A+ +F +I  +D+V WN L+A Y 
Sbjct: 325 VS------------------ETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYT 366

Query: 410 DLGRSGEASRLFYQMQLE-----------------------------------------G 428
             G + EA  LF  ++ E                                         G
Sbjct: 367 QNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSG 426

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
             P+I   NS+I  +++ G + E   +F  M    V+ + ++W T+I G  QN  G EA+
Sbjct: 427 EEPDIFVGNSLIDMYMKCGSVEEGLRVFENM----VEKDHVSWNTMIIGYAQNGYGMEAL 482

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI-VTSLVDM 547
             FQ+MLE+G KP   T+   L AC+    +  GR     + +    LP     T +VD+
Sbjct: 483 ELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDL 542

Query: 548 YAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMHGLAVEALALFKNLQQK--GIDPDS 604
             + G + +AK + +  P + +  V+++++S   +H      + L K + +K   IDP S
Sbjct: 543 LGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVH----RNITLGKYVAEKIFEIDPTS 598



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 145/471 (30%), Positives = 228/471 (48%), Gaps = 58/471 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+  ++  +  EA+D    M   +F +    +G  L  C   +D+  G QIH  I
Sbjct: 123 SWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLI 182

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K+   ++ + ++ + L+ FY+KC  +  A R+F  +  KNV SW  +I    + G + +
Sbjct: 183 SKSK--YSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIE 240

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVFVASSLI 224
           AL  F  M E G  PD   L +V+ AC  L     G  +H  V+K   F   + + ++L+
Sbjct: 241 ALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALV 300

Query: 225 DMYGKCGDLEEARKVFDGMIARN-------------------------------VVAWNS 253
           DMY KCG + EAR VFD M  RN                               +V+WN+
Sbjct: 301 DMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNA 360

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           +I GY QNG NEEA+ +F  +  E V PT  +  ++L+ASANL  L+ G+QAH+  V +G
Sbjct: 361 LIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHG 420

Query: 314 M------ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
                  E D  +G+S+I+ Y K G +E+   VF  MVE+D V+WN +I  Y Q+G    
Sbjct: 421 FRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYG-- 478

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
                        E ++  +++  S    D V     L A +  G   E  R F+ M  E
Sbjct: 479 ------------MEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKE 526

Query: 428 -GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            G+ P    +  ++    R G + EAKD+   ++S+  QP+ + W++L+S 
Sbjct: 527 HGLLPVKDHYTCMVDLLGRAGCLEEAKDL---IESMPKQPDAVVWSSLLSA 574


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/738 (29%), Positives = 391/738 (52%), Gaps = 23/738 (3%)

Query: 45  KSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHAR 104
           KSY   I+ LS      + +   + M   +       +  L++ C        G   H R
Sbjct: 14  KSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQR 73

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           ++ +G  ++ + Y+ T L+ FY+K      A ++F  +  +NV  W  +IG   R G  +
Sbjct: 74  VIVDG--YSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHD 131

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
            A   +  M+  G+ P +  +  +L   G L  V   + +H  V++ GF   V +A+S++
Sbjct: 132 VAFSMYNIMRRQGIQPSSVTMLGLLS--GVLELVHL-QCLHACVIQYGFGSDVALANSML 188

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
           ++Y KCG +E+A+ +F+ M AR+V++WNS++ GY Q G   E +++   M  +G+EP + 
Sbjct: 189 NVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQ 248

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +  S++SA+A    L  GK  H   +  G+E D+ + +S+I  Y K G +  A  +F  M
Sbjct: 249 TFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
           + +D+++W  +I+  VQ+  +D+ V                 +++  S ++       ++
Sbjct: 309 MHKDVISWTAMISGLVQNDCADMAVTV--------------FRRMLKSRVMPSTATIASV 354

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           LAA A+LG     + +   +  + I  +I S NS++  + + G + ++  +F +M     
Sbjct: 355 LAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS---- 410

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
           + ++++W  ++SG  QN    +A+L F EM +   +P + T+   L AC  + +L  G+ 
Sbjct: 411 RRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKW 470

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           IH ++ +  L     I T+LVDMY+KCG++  A++ FD  P ++L  ++++I+GY  HG 
Sbjct: 471 IHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGK 530

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG 644
              AL ++ +    GI P+ + + +IL+ACSH GLV++GL  F  M  D  ++P +EH  
Sbjct: 531 GETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRA 590

Query: 645 CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
           C+V+LLSR G ++EA      M   P   ++G LL  C  +   EL + ++  ++ L+P 
Sbjct: 591 CIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPA 650

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPK 764
           N GNYV L+++YA+  RW+ V +V   MK   L+K PG S+I++   +  F     SHP+
Sbjct: 651 NAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQ 710

Query: 765 TEEIYATLALLGMHVRLV 782
            EEI   L +LG  +R V
Sbjct: 711 FEEIMLVLKILGSEMRKV 728



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 135/319 (42%), Gaps = 40/319 (12%)

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           M+ AK  FL        P   ++  +I+ L+      + +L +  ML T   P   T   
Sbjct: 1   MSRAKPSFLN-------PATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPS 53

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            + ACT +    +G + H  +I       + I TSL++ Y+K G+   A++VFD    + 
Sbjct: 54  LVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRN 113

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA--------CSHA--- 617
           +  +  MI  Y   G    A +++  ++++GI P S+T   +L+         C HA   
Sbjct: 114 VVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVI 173

Query: 618 --------GLVNEGLELF--VGMFSDHQV------KPSMEHFGCVVNLLSRCGNLDEALR 661
                    L N  L ++   G   D Q          +  +  +V+  ++ GN+ E L+
Sbjct: 174 QYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQ 233

Query: 662 VILTMPCD---PDAHIIGSLLSTCVKSNETELAEYISEHLLQ--LEPDNPGNYVALSNAY 716
           +++ M  D   PD    GSL+S     ++  + + +  H+L+  LE D+     +L   Y
Sbjct: 234 LLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIE-TSLIGMY 292

Query: 717 AASGRWNEVSQVRDIMKEK 735
              G  N   ++ + M  K
Sbjct: 293 LKCGNVNSAFRIFEGMMHK 311


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/634 (34%), Positives = 329/634 (51%), Gaps = 67/634 (10%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA---------- 250
            R +H  ++K  F   +F+ + L+D YGKCG  E+ARKVFD M  RN  +          
Sbjct: 38  ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTK 97

Query: 251 ---------------------WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
                                WN+M+ G+ Q+   EEA+R F +M  E       S  S 
Sbjct: 98  FGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSA 157

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           LSA A L  L+ G Q HA+   +   LD  +GS++++ YSK G++  A+  F  M  R+I
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNI 217

Query: 350 VTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNS 392
           V+WN LI  Y Q+G                 + D +  +S+V   A    I    Q+   
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHAR 277

Query: 393 IILRD-----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
           ++ RD     +VL N L+  YA   R  EA  +F +M L     N++S  S++ G+ R  
Sbjct: 278 VVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR----NVVSETSMVCGYARAA 333

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
            +  A+ MF  M    ++ N+++W  LI+G TQN    EA+  F  +    I P+  T  
Sbjct: 334 SVKAARLMFSNM----MEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFG 389

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTP------IVTSLVDMYAKCGNIHQAKRVF 561
             L+AC ++A L+ GR  H  +++H     +       +  SL+DMY KCG +     VF
Sbjct: 390 NLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVF 449

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           +    +++  +NAMI GYA +G    AL +F+ +   G  PD +T   +L+ACSHAGLV 
Sbjct: 450 ERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVE 509

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           EG   F  M ++  + P  +HF C+V+LL R G LDEA  +I TMP  PD  + GSLL+ 
Sbjct: 510 EGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAA 569

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C      EL +Y++E L++++P N G YV LSN YA  GRW +V +VR  M+++G+ K P
Sbjct: 570 CKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQP 629

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           GCSWI+I   +HVF+  D+ HP  ++I+  L  L
Sbjct: 630 GCSWIEIQSRVHVFMVKDKRHPLKKDIHLVLKFL 663



 Score =  222 bits (565), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 183/689 (26%), Positives = 319/689 (46%), Gaps = 128/689 (18%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           + +LL  CV  +     ++IHARI+K    F+   +++ +LV  Y KC   + A ++F R
Sbjct: 22  FAKLLDSCVRSKSGIDARRIHARIIKTQ--FSSEIFIQNRLVDAYGKCGYFEDARKVFDR 79

Query: 142 LRVKNVFSWAAIIGLNCRVG-------------------------------LSEKALIGF 170
           +  +N FS+ A++ +  + G                                 E+AL  F
Sbjct: 80  MPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFF 139

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           V+M  +    + +   + L AC  L  +  G  +H  + K  +   V++ S+L+DMY KC
Sbjct: 140 VDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKC 199

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +  A++ FDGM  RN+V+WNS+I  Y QNG   +A+ VF  M   GVEP  +++ S++
Sbjct: 200 GVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVV 259

Query: 291 SASANLDALDEGKQAHAVAVI-NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           SA A+  A+ EG Q HA  V  +    D VLG+++++ Y+K   + +A +VF RM  R++
Sbjct: 260 SACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNV 319

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
           V+                   +S+V  YA+   +  A+ +F++++ ++VV WN L+A Y 
Sbjct: 320 VS------------------ETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYT 361

Query: 410 DLGRSGEASRLFYQMQLEGISP-------------------------------------- 431
             G + EA RLF  ++ E I P                                      
Sbjct: 362 QNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSG 421

Query: 432 ---NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
              +I   NS+I  +++ G + +   +F +M    V+ ++++W  +I G  QN  G  A+
Sbjct: 422 EESDIFVGNSLIDMYMKCGMVEDGCLVFERM----VERDVVSWNAMIVGYAQNGYGTNAL 477

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI---VTSLV 545
             F++ML +G KP   T+   LSAC+    +  GR  + + +R +L L  P+    T +V
Sbjct: 478 EIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRR-YFHSMRTELGL-APMKDHFTCMV 535

Query: 546 DMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMHGLAVEALALFKNLQQK--GIDP 602
           D+  + G + +A  +    P + +  V+ ++++   +HG     + L K + +K   IDP
Sbjct: 536 DLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHG----NIELGKYVAEKLMEIDP 591

Query: 603 DSITFTNILNACSHAGLVNEGLELFVGMFSD-HQVKPSMEHFGCVVNLLSRCGNLDEALR 661
                   LN+  +  L N   EL  G + D  +V+  M   G +      C  ++   R
Sbjct: 592 --------LNSGPYVLLSNMYAEL--GRWKDVVRVRKQMRQRGVIKQ--PGCSWIEIQSR 639

Query: 662 VILTM------PCDPDAHIIGSLLSTCVK 684
           V + M      P   D H++   L+  +K
Sbjct: 640 VHVFMVKDKRHPLKKDIHLVLKFLTEQMK 668



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 6/213 (2%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+  ++  +  EAV L   +K  +       +G LL  C    D+  G+Q H +ILK+G 
Sbjct: 357 IAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGF 416

Query: 111 FFARNE----YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA 166
           +F   E    +V   L+  Y KC  ++    +F R+  ++V SW A+I    + G    A
Sbjct: 417 WFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNA 476

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA-VHGYVLKVGFDGCVFVASSLID 225
           L  F +M   G  PD+  +  VL AC   G V  GR   H    ++G        + ++D
Sbjct: 477 LEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVD 536

Query: 226 MYGKCGDLEEARKVFDGM-IARNVVAWNSMIVG 257
           + G+ G L+EA  +   M +  + V W S++  
Sbjct: 537 LLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAA 569


>gi|326509061|dbj|BAJ86923.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 866

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 252/798 (31%), Positives = 386/798 (48%), Gaps = 54/798 (6%)

Query: 10  PNPKFSH-TKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLT 68
           P P   H   P  P      +   L  +D+   +  ++          +   R+A  LL+
Sbjct: 10  PTPHHHHYAAPPSPRTSRGAYSPSLLRADSPISAALRA--------GDDSSFRDARFLLS 61

Query: 69  EMKCRNFQIGPEIYGELLQGCVYKR-DMYTGQ----QIHARILKNGDFFARNEYVETKLV 123
            ++    Q G  ++GE  +  V ++ D+ T +    Q+H+  ++ G    R  +V   L 
Sbjct: 62  LLR----QCGDLLHGEDDKSPVAEQTDLVTARRLAPQLHSLAVRAG-HATREPHVACALA 116

Query: 124 VFYAKCDALDVASRLFCRLR---VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
               +        RL         K+   W   + +    G  + A+  F EM+  GV+ 
Sbjct: 117 DLLERLGRGASGRRLLAEGDGDDWKDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAA 176

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKV 239
           D +     L ACG  G    GRAVH + L+VG  D    V   L  MY +  D+  A  V
Sbjct: 177 DGYACARALHACGRAGRRLEGRAVHAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTV 236

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-----TLEGVEPTRVSVTSILSASA 294
                   VVAWN++I   V+ GL ++A+ +   M     T E  EPT  +  ++LS  A
Sbjct: 237 LLRTAGAGVVAWNAVIACCVRLGLVDDALELAERMARDAETSEAAEPTLATWNTVLSGCA 296

Query: 295 NLDALDEGKQAHAVAVI-----NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
                  G+   A+AV+      G+  D    SS++   +  G L     V    +   +
Sbjct: 297 R-----HGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVHCFFLRHGL 351

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                           D    +++VDMYAKC R+D A++VF+ +  R++  WN+L+A +A
Sbjct: 352 --------------SPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHA 397

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
           + G    A  L   M+   I PN+ +WN +I G+  NG  ++A  +  Q++S GV PN++
Sbjct: 398 NAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVV 457

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           +WT+LISG        ++  FF EM + GI+PS  T+   L AC  +A L  G+ +H + 
Sbjct: 458 SWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFA 517

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
           +R        + T+L+DMYAK G++  AKRVF     K L   NAM++G A+HG A EA 
Sbjct: 518 LRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAA 577

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
           ALF ++ + G+ PD ITFT +L AC   GLV E  E    M + + V P+ EH  C+V+L
Sbjct: 578 ALFHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDL 637

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
           L+R G LDEA+  I   P +P A   G+LL+ C      +LAE  + HL +LEP N  NY
Sbjct: 638 LARRGYLDEAMTFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNSANY 697

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS--HPKTEE 767
           +A+ + Y     ++E   ++  MK +G+   PG SW Q G  +HVF     S  HP+T E
Sbjct: 698 LAMMSLYEQHQMFDEAESLKYAMKARGVDARPGWSWTQAGRSIHVFEVDGGSSPHPETPE 757

Query: 768 IYATLALLGMHVRLVSKV 785
           IY  ++ L   +R+V  V
Sbjct: 758 IYDEMSRLVSQMRMVGYV 775


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/576 (35%), Positives = 338/576 (58%), Gaps = 35/576 (6%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI   GK G + EAR+VF+ M  R+VV+W ++I GY++ G+ EEA  +F           
Sbjct: 72  LITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLF---DRNDAIKN 128

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVF 341
            V+ T+++S     + ++E ++     + + M + NV+  +++I  Y++ G ++ A  +F
Sbjct: 129 VVTWTALVSGYVRWNRIEEARR-----LFDAMPVKNVISWNTMIEGYARKGWIDQALDLF 183

Query: 342 SRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKCERIDNAKQ 388
            +M ER++V+WN +I +++Q               + DV+  +++V   +K  RID+A+ 
Sbjct: 184 EKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARL 243

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           +F+ + +R+VV WNT++  YA   R  EA +LF QM    +S    SWN++I GF++NG+
Sbjct: 244 LFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELS----SWNTMITGFIQNGK 299

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTTIT 507
           +  A D F +M +     N++TWT +ISG  Q+    EA+  F EM     +KP+  T  
Sbjct: 300 LERAVDFFYKMSN----KNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFV 355

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-- 565
             L AC+ +A+L  G+ IH  + +        +V++L++MY+KCG +  A+++FD     
Sbjct: 356 SVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIG 415

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            +++  +N MI+ YA HG   +A++LF  +Q  G  PD++T+  +L+ACSHAGLV+EGL+
Sbjct: 416 HRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLK 475

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
           LF  +  D  +K   +HF C+V+L  R G L EA   I  +   P A +  +LL+ C   
Sbjct: 476 LFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVH 535

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
              +L +  +E LL+ EP+N G Y+ LSN YA++G+W E + VR  MK+KGL+K PGCSW
Sbjct: 536 GHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSW 595

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
           I++G  +HVFV  D SH + E IY  L L  +H ++
Sbjct: 596 IEVGNTVHVFVVGDNSHREFENIY--LLLHDLHTKM 629



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 157/331 (47%), Gaps = 23/331 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   ++ LSK  +I +A  L  +M  RN               V    M  G   + R+
Sbjct: 224 SWTTMVAGLSKNGRIDDARLLFDKMPVRN--------------VVSWNTMIIGYAQNMRL 269

Query: 106 LKNGDFFARNEYVE----TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG 161
            +    F +    E      ++  + +   L+ A   F ++  KNV +W A+I  + + G
Sbjct: 270 DEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDG 329

Query: 162 LSEKALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
            SE+AL  F EMQ  + V P+     +VL AC  L  +  G+ +H  + K  +     V 
Sbjct: 330 RSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVV 389

Query: 221 SSLIDMYGKCGDLEEARKVF-DGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           S+LI+MY KCG+LE ARK+F DG I  R+VV+WN MI  Y  +G   +AI +F EM   G
Sbjct: 390 SALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALG 449

Query: 279 VEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
             P  V+  ++LSA ++   +DEG K    +     ++L     + +++ + + G L++A
Sbjct: 450 FRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEA 509

Query: 338 -EVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
            + +    V+     W  L+A     G  D+
Sbjct: 510 FDFIKGLEVKPSASVWAALLAGCNVHGHIDL 540



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 136/511 (26%), Positives = 219/511 (42%), Gaps = 96/511 (18%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+ L KE +I EA  +  EM  R+               V    + TG      I +   
Sbjct: 73  ITQLGKEGKIGEARQVFEEMPDRD--------------VVSWTAVITGYIKCGMIEEAKT 118

Query: 111 FFARNEYVE-----TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            F RN+ ++     T LV  Y + + ++ A RLF  + VKNV SW  +I    R G  ++
Sbjct: 119 LFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQ 178

Query: 166 ALIGFVEMQEDGVSPDNFVLP---------------NVLKACGALGWVGF--GRAVHGYV 208
           AL  F +M E  V   N V+                N +     + W     G + +G +
Sbjct: 179 ALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRI 238

Query: 209 --LKVGFDGC----VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
              ++ FD      V   +++I  Y +   L+EA K+F+ M  R + +WN+MI G++QNG
Sbjct: 239 DDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNG 298

Query: 263 LNEEAIRVFYEMT--------------------------------LEGVEPTRVSVTSIL 290
             E A+  FY+M+                                   V+P   +  S+L
Sbjct: 299 KLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVL 358

Query: 291 SASANLDALDEGKQAHA-VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS--RMVER 347
            A + L AL EG+Q H  ++     E+ +V+ S++IN YSK G LE A  +F    +  R
Sbjct: 359 GACSKLAALCEGQQIHQIISKTVYQEVADVV-SALINMYSKCGELELARKIFDDGSIGHR 417

Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
           D+V+WN +IA+Y   G     + S   +M A   R DN             V +  LL+A
Sbjct: 418 DVVSWNGMIAAYAHHGHGHKAI-SLFDEMQALGFRPDN-------------VTYIALLSA 463

Query: 408 YADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
            +  G   E  +LF  + +   I      +  ++  F R G++ EA D    ++ L V+P
Sbjct: 464 CSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDF---IKGLEVKP 520

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           +   W  L++G   +   +   L  +++LET
Sbjct: 521 SASVWAALLAGCNVHGHIDLGKLTAEKLLET 551



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 183/417 (43%), Gaps = 62/417 (14%)

Query: 362 SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG--------- 412
           S  S+V  ++ ++    K  +I  A+QVF  +  RDVV W  ++  Y   G         
Sbjct: 61  SANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLF 120

Query: 413 -----------------------RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
                                  R  EA RLF  M ++    N+ISWN++I G+ R G +
Sbjct: 121 DRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVK----NVISWNTMIEGYARKGWI 176

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           ++A D+F +M     + N+++W T+I+   Q    +EA   F  M E  +  S TT+   
Sbjct: 177 DQALDLFEKMP----ERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV-ISWTTMVAG 231

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM---YAKCGNIHQAKRVFDISPS 566
           LS        +NGR     L+     +P   V S   M   YA+   + +A ++F+  P 
Sbjct: 232 LS--------KNGRIDDARLLFDK--MPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPE 281

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           +EL  +N MI+G+  +G    A+  F  +  K +    +T+T +++     G   E L++
Sbjct: 282 RELSSWNTMITGFIQNGKLERAVDFFYKMSNKNV----VTWTAVISGHVQDGRSEEALKI 337

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL---RVILTMPCDPDAHIIGSLLSTCV 683
           F  M + + VKP+   F  V+   S+   L E     ++I        A ++ +L++   
Sbjct: 338 FSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYS 397

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
           K  E ELA  I +    +   +  ++  +  AYA  G  ++   + D M+  G R +
Sbjct: 398 KCGELELARKIFDD-GSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPD 453


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/688 (31%), Positives = 356/688 (51%), Gaps = 87/688 (12%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M+ +GV  + F LP VLK          G  VH   +  GF   VFVA++L+ MYG  G 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPD---AQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 233 LEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
           +++AR+VFD   + RN V+WN ++  YV+N    +AI+VF EM   G++PT    + +++
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           A      +D G+Q HA+ V  G E D    +++++ Y K+G ++ A V+F +M + D+V+
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 352 WNLLIASYVQSGQ----------------------------------------------- 364
           WN LI+  V +G                                                
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMI 237

Query: 365 -----SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
                SD  +   +VDMYAK   +D+A +VF+ +  RD++LWN L++  +  GR  EA  
Sbjct: 238 KANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFS 297

Query: 420 LFYQMQLEGISPNIISWNSVI---------------------LGFLRNGQM-NEAKDMFL 457
           +FY ++ EG+  N  +  +V+                     +GF+ +  + N   D + 
Sbjct: 298 IFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYW 357

Query: 458 QMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           +   L             ++I  T++I+ L+Q   G  AI  F EML  G++P    ++ 
Sbjct: 358 KCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSS 417

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            L+AC  +++   G+ +H +LI+           +LV  YAKCG+I  A+  F   P + 
Sbjct: 418 LLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERG 477

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           +  ++AMI G A HG    AL LF  +  +GI+P+ IT T++L AC+HAGLV+E    F 
Sbjct: 478 VVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFN 537

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
            M     +  + EH+ C+++LL R G LD+A+ ++ +MP   +A + G+LL       + 
Sbjct: 538 SMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDP 597

Query: 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           EL +  +E L  LEP+  G +V L+N YA+SG WNEV++VR +MK+  ++K P  SW+++
Sbjct: 598 ELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEV 657

Query: 749 GEELHVFVACDRSHPKTEEIYATLALLG 776
            +++H F+  D+SHP T+EIY+ L  LG
Sbjct: 658 KDKVHTFIVGDKSHPMTKEIYSKLDELG 685



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 233/482 (48%), Gaps = 28/482 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+  K  Q  +A+ +  EM     Q     +  ++  C   R++  G+Q+HA +++ G 
Sbjct: 81  MSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMG- 139

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            + ++ +    LV  Y K   +D+AS +F ++   +V SW A+I      G   +A+   
Sbjct: 140 -YEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL 198

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           ++M+  G+ P+ F+L ++LKAC   G    GR +HG+++K   D   ++   L+DMY K 
Sbjct: 199 LQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKN 258

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             L++A KVFD M  R+++ WN++I G    G ++EA  +FY +  EG+   R ++ ++L
Sbjct: 259 HFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVL 318

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            ++A+L+A    +Q HA+A   G   D  + + +I+ Y K   L DA  VF      DI+
Sbjct: 319 KSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDII 378

Query: 351 TWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
               +I +  Q                   + D  V SS+++  A     +  KQV   +
Sbjct: 379 AVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 438

Query: 394 ILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           I R    D    N L+  YA  G   +A   F  +   G    ++SW+++I G  ++G  
Sbjct: 439 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERG----VVSWSAMIGGLAQHGHG 494

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITC 508
             A ++F +M   G+ PN IT T+++         +EA  +F  M E  GI  +    +C
Sbjct: 495 KRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSC 554

Query: 509 AL 510
            +
Sbjct: 555 MI 556



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 4/207 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++LS+      A+ L  EM  +  +  P +   LL  C        G+Q+HA ++K   
Sbjct: 384 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ- 442

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +    LV  YAKC +++ A   F  L  + V SW+A+IG   + G  ++AL  F
Sbjct: 443 -FMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELF 501

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFVASSLIDMYGK 229
             M ++G++P++  + +VL AC   G V   +     + ++ G D      S +ID+ G+
Sbjct: 502 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 561

Query: 230 CGDLEEARKVFDGM-IARNVVAWNSMI 255
            G L++A ++ + M    N   W +++
Sbjct: 562 AGKLDDAMELVNSMPFQANASVWGALL 588


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/687 (31%), Positives = 353/687 (51%), Gaps = 83/687 (12%)

Query: 172 EMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCG 231
            + E G   D+     + + C  L     G+ V  ++++ G    ++  ++LI +Y  CG
Sbjct: 47  RLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICG 106

Query: 232 DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
           ++ EAR++FD +  + VV WN++I GY Q G  +EA  +F +M  EG+EP+ ++  S+L 
Sbjct: 107 NVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLD 166

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           A ++   L+ GK+ HA  V  G   D  +G+++++ Y K G ++DA  VF  +  RD+ T
Sbjct: 167 ACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVST 226

Query: 352 WNLLIASYVQSGQ----------------------------------------------- 364
           +N+++  Y +SG                                                
Sbjct: 227 FNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCM 286

Query: 365 -----SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
                 D+ VA+S++ MY  C  I+ A++VF+++ +RDVV W  ++  YA+ G   +A  
Sbjct: 287 NAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFG 346

Query: 420 LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL----------- 468
           LF  MQ EGI P+ I++  ++     +  +N A+++  Q+   G   +L           
Sbjct: 347 LFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYA 406

Query: 469 --------------------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
                               ++W+ +I    +N  G EA   F  M  + I+P   T   
Sbjct: 407 KCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYIN 466

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            L+AC  + +L  G  I+   I+ DL    P+  +L+ M AK G++ +A+ +FD    ++
Sbjct: 467 LLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRD 526

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           +  +NAMI GY++HG A EAL LF  + ++   P+S+TF  +L+ACS AG V+EG   F 
Sbjct: 527 VITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFT 586

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
            +     + P+++ +GC+V+LL R G LDEA  +I +MP  P + I  SLL  C      
Sbjct: 587 YLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNL 646

Query: 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           ++AE  +E  L ++P +   YV LS+ YAA+G W  V++VR +M+ +G+RK  GC+WI++
Sbjct: 647 DVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEV 706

Query: 749 GEELHVFVACDRSHPKTEEIYATLALL 775
             ++H FV  DRSHP   EIYA LA L
Sbjct: 707 AGKVHTFVVEDRSHPLVGEIYAELARL 733



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 136/516 (26%), Positives = 252/516 (48%), Gaps = 58/516 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+  ++   ++EA  L  +M     +     +  +L  C     +  G+++HA+++  G 
Sbjct: 130 IAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAG- 188

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  +  + T LV  Y K  ++D A ++F  L +++V ++  ++G   + G  EKA   F
Sbjct: 189 -FVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELF 247

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             MQ+ G+ P+     ++L  C     + +G+AVH   +  G    + VA+SLI MY  C
Sbjct: 248 YRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTC 307

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E AR+VFD M  R+VV+W  MI GY +NG  E+A  +F  M  EG++P R++   I+
Sbjct: 308 GSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIM 367

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           +A A    L+  ++ H+   I G   D ++ +++++ Y+K G ++DA  VF  M  RD+V
Sbjct: 368 NACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVV 427

Query: 351 TWNLLIASYVQSGQ---------------------------------------------- 364
           +W+ +I +YV++G                                               
Sbjct: 428 SWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQA 487

Query: 365 ------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                 S V + ++++ M AK   ++ A+ +F++++ RDV+ WN ++  Y+  G + EA 
Sbjct: 488 IKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREAL 547

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ-MQSLGVQPNLITWTTLISG 477
            LF +M  E   PN +++  V+    R G ++E +  F   ++  G+ P +  +  ++  
Sbjct: 548 YLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDL 607

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           L +    +EA L  + M    +KP+++  +  L AC
Sbjct: 608 LGRAGELDEAELLIKSM---PVKPTSSIWSSLLVAC 640


>gi|326516644|dbj|BAJ92477.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518576|dbj|BAJ88317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 867

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 252/798 (31%), Positives = 386/798 (48%), Gaps = 54/798 (6%)

Query: 10  PNPKFSH-TKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLT 68
           P P   H   P  P      +   L  +D+   +  ++          +   R+A  LL+
Sbjct: 11  PTPHHHHYAAPPSPRTSRGAYSPSLLRADSPISAALRA--------GDDSSFRDARFLLS 62

Query: 69  EMKCRNFQIGPEIYGELLQGCVYKR-DMYTGQ----QIHARILKNGDFFARNEYVETKLV 123
            ++    Q G  ++GE  +  V ++ D+ T +    Q+H+  ++ G    R  +V   L 
Sbjct: 63  LLR----QCGDLLHGEDDKSPVAEQTDLVTARRLAPQLHSLAVRAG-HATREPHVACALA 117

Query: 124 VFYAKCDALDVASRLFCRLR---VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
               +        RL         K+   W   + +    G  + A+  F EM+  GV+ 
Sbjct: 118 DLLERLGRGASGRRLLAEGDGDDWKDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAA 177

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKV 239
           D +     L ACG  G    GRAVH + L+VG  D    V   L  MY +  D+  A  V
Sbjct: 178 DGYACARALHACGRAGRRLEGRAVHAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTV 237

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-----TLEGVEPTRVSVTSILSASA 294
                   VVAWN++I   V+ GL ++A+ +   M     T E  EPT  +  ++LS  A
Sbjct: 238 LLRTAGAGVVAWNAVIACCVRLGLVDDALELAERMARDAETSEAAEPTLATWNTVLSGCA 297

Query: 295 NLDALDEGKQAHAVAVI-----NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
                  G+   A+AV+      G+  D    SS++   +  G L     V    +   +
Sbjct: 298 R-----HGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVHCFFLRHGL 352

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                           D    +++VDMYAKC R+D A++VF+ +  R++  WN+L+A +A
Sbjct: 353 --------------SPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHA 398

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
           + G    A  L   M+   I PN+ +WN +I G+  NG  ++A  +  Q++S GV PN++
Sbjct: 399 NAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVV 458

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           +WT+LISG        ++  FF EM + GI+PS  T+   L AC  +A L  G+ +H + 
Sbjct: 459 SWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFA 518

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
           +R        + T+L+DMYAK G++  AKRVF     K L   NAM++G A+HG A EA 
Sbjct: 519 LRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAA 578

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
           ALF ++ + G+ PD ITFT +L AC   GLV E  E    M + + V P+ EH  C+V+L
Sbjct: 579 ALFHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDL 638

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
           L+R G LDEA+  I   P +P A   G+LL+ C      +LAE  + HL +LEP N  NY
Sbjct: 639 LARRGYLDEAMAFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNSANY 698

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS--HPKTEE 767
           +A+ + Y     ++E   ++  MK +G+   PG SW Q G  +HVF     S  HP+T E
Sbjct: 699 LAMMSLYEQHQMFDEAESLKYAMKARGVDARPGWSWTQAGRSIHVFEVDGGSSPHPETPE 758

Query: 768 IYATLALLGMHVRLVSKV 785
           IY  ++ L   +R+V  V
Sbjct: 759 IYDEMSRLVSQMRMVGYV 776


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/678 (32%), Positives = 348/678 (51%), Gaps = 87/678 (12%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           L +A ++F R+   +  ++ A+I      G    A+  +  M    V P+ +  P VLKA
Sbjct: 49  LALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKA 108

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C AL  +  GR +H +   VG    +FV+++LID+Y +C     A  VF  M  R+VVAW
Sbjct: 109 CSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAW 168

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           N+M+ GY  +G+   AI    +M   G + P   ++ S+L   A   AL +G   HA   
Sbjct: 169 NAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYC- 227

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA 370
                                                        + +Y+   +  V++ 
Sbjct: 228 ---------------------------------------------LRAYLDQNEEQVLIG 242

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG-- 428
           ++++DMYAKC+ +  A +VF+ + +R+ V W+ L+  +    R  EA  LF  M +EG  
Sbjct: 243 TALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMC 302

Query: 429 ----------------------------------ISPNIISWNSVILGFLRNGQMNEAKD 454
                                             I  ++ + NS++  + + G +NEA  
Sbjct: 303 FLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATM 362

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F ++       + I++  L+SG  QN    EA L F++M    ++P   T+   + AC+
Sbjct: 363 LFDEI----AIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACS 418

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
            +A+L++GR  HG +I   L L T I  SL+DMYAKCG I  +++VFD  P++++  +N 
Sbjct: 419 HLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNT 478

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           MI+GY +HGL  EA  LF +++ +G +PD +TF  ++ ACSH+GLV EG   F  M   +
Sbjct: 479 MIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKY 538

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            + P MEH+ C+V+LL+R G LDEA + I +MP   D  + G+LL  C      +L + +
Sbjct: 539 GILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQV 598

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           S  + +L P+  GN+V LSN ++A+GR++E ++VR I K KG +K+PGCSWI+I   LH 
Sbjct: 599 SRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHA 658

Query: 755 FVACDRSHPKTEEIYATL 772
           FV  D+SHP + +IY  L
Sbjct: 659 FVGGDQSHPCSPDIYHEL 676



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 141/510 (27%), Positives = 241/510 (47%), Gaps = 64/510 (12%)

Query: 45  KSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGE--LLQGCVYKRDMYTGQQIH 102
           ++Y   I + S       A+DL   M    F++ P  Y    +L+ C    D+  G+ IH
Sbjct: 65  RAYNALIRAYSWRGPFHAAIDLYRSM--LYFRVPPNKYTFPFVLKACSALADLCAGRTIH 122

Query: 103 ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL 162
           A     G     + +V T L+  Y +C     A+ +F ++ +++V +W A++      G+
Sbjct: 123 AHAAAVG--LHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGM 180

Query: 163 SEKALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC---VF 218
              A+   ++MQ+  G+ P+   L ++L      G +  G +VH Y L+   D     V 
Sbjct: 181 YHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVL 240

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           + ++L+DMY KC  L  A +VF GM  RN V W+++I G+V      EA  +F +M +EG
Sbjct: 241 IGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEG 300

Query: 279 V-EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           +   +  SV S L   A+L  L  G Q HA+   +G+  D   G+S+++ Y+K GL+ +A
Sbjct: 301 MCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEA 360

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVV------------ 368
            ++F  +  +D +++  L++ YVQ+G                 Q D+             
Sbjct: 361 TMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHL 420

Query: 369 -----------------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                                  + +S++DMYAKC RID ++QVF+ +  RD+V WNT++
Sbjct: 421 AALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMI 480

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGV 464
           A Y   G   EA+ LF  M+ +G  P+ +++  +I     +G + E K  F  M    G+
Sbjct: 481 AGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGI 540

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEM 494
            P +  +  ++  L +    +EA  F Q M
Sbjct: 541 LPRMEHYICMVDLLARGGFLDEAYQFIQSM 570



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 150/282 (53%), Gaps = 18/282 (6%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNG---DFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
           L+ C    D+  G Q+HA + K+G   D  A N      L+  YAK   ++ A+ LF  +
Sbjct: 313 LRVCASLADLRMGTQLHALLAKSGIHADLTAGNS-----LLSMYAKAGLINEATMLFDEI 367

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
            +K+  S+ A++    + G +E+A + F +MQ   V PD   + +++ AC  L  +  GR
Sbjct: 368 AIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGR 427

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
             HG V+  G      + +SLIDMY KCG ++ +R+VFD M AR++V+WN+MI GY  +G
Sbjct: 428 CSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHG 487

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ-----AHAVAVINGMELD 317
           L +EA  +F  M  +G EP  V+   +++A ++   + EGK       H   ++  ME  
Sbjct: 488 LGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 547

Query: 318 NVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIAS 358
             +    ++  ++ G L++A + + S  ++ D+  W  L+ +
Sbjct: 548 ICM----VDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGA 585



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 11/121 (9%)

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G +  A++VFD  P+ +   YNA+I  Y+  G    A+ L++++    + P+  TF  +L
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 612 NACSH-----AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
            ACS      AG         VG+ +D  V  ++      ++L  RC     A  V   M
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTAL------IDLYIRCARFGPAANVFAKM 160

Query: 667 P 667
           P
Sbjct: 161 P 161


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 238/712 (33%), Positives = 364/712 (51%), Gaps = 99/712 (13%)

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC-VFVASSL 223
           +AL  FV++   G       +  VLK CG +     G  +H   +K GFD   V V ++L
Sbjct: 83  EALDHFVDVHRCG-RVQGAAVSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTAL 141

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           +DMY KCG +E+ R VF+GM  RNVV W S++ GYVQ     + + +F+ M  EGV P  
Sbjct: 142 VDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNP 201

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            + TS+LSA A+  A+D G++ HA +V  G      + +S+IN YSK GL+E+A+ VF +
Sbjct: 202 FTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQ 261

Query: 344 MVERDIVTWNLLIASYV-----------------------QSGQSDVV------------ 368
           M  RD+V+WN L+A  +                       QS  S V+            
Sbjct: 262 METRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALA 321

Query: 369 -----------------VASSIVDMYAKCERIDNAKQVFNSIIL----RDVVLWNTLLAA 407
                            V ++I+D Y+KC  +D+A   FN  +L    ++VV W  ++  
Sbjct: 322 RQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDA---FNIFLLMPGSQNVVSWTAMIGG 378

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILG------------------------- 442
                    A+ LF +M+ + + PN  ++++V+                           
Sbjct: 379 CIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVG 438

Query: 443 ------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
                 + + G   EA  +F  +       +++ W+ ++S  +Q    + A   F +M  
Sbjct: 439 TALLASYSKLGNTEEALSIFKMID----HKDVVAWSAMLSCYSQAGDCDGATNVFIKMSM 494

Query: 497 TGIKPSTTTITCALSAC-TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
            G+KP+  TI+ A+ AC +  A +  GR  H   I++       + ++LV MYA+ G+I 
Sbjct: 495 QGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSID 554

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
            A+ VF+    ++L  +N+MISGYA HG + EAL  F+ ++  GI+ D  TF  ++  C+
Sbjct: 555 SARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCT 614

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           HAGLV EG + F  M  DH + P+MEH+ C+V+L SR G LDE + +I  MP    A + 
Sbjct: 615 HAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVW 674

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
            +LL  C      EL +  ++ LL LEPD+   YV LSN YAA+GRW E  +VR +M  K
Sbjct: 675 RTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSK 734

Query: 736 GLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKVFC 787
            ++K  GCSWIQI  ++H F+ACD+SHP +E+IYA L    M  RL  + +C
Sbjct: 735 KVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLK--AMTTRLKQEGYC 784



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 139/591 (23%), Positives = 262/591 (44%), Gaps = 94/591 (15%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEY-VET 120
           EA+D   ++  R  ++       +L+ C    D  +G+Q+H   +K G  F R E  V T
Sbjct: 83  EALDHFVDVH-RCGRVQGAAVSRVLKVCGLIPDRVSGEQLHCLCVKCG--FDRAEVGVGT 139

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            LV  Y KC  ++    +F  +  +NV +W +++    +       +  F  M+ +GV P
Sbjct: 140 ALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWP 199

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           + F   +VL A  + G V  GR VH   +K G    VFV +SLI+MY KCG +EEA+ VF
Sbjct: 200 NPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVF 259

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
             M  R++V+WN+++ G + N    EA+++F++      + ++ + ++++   ANL  L 
Sbjct: 260 RQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLA 319

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV-ERDIVTWNLLIASY 359
             +Q H+  + +G   D  + ++I++ YSK G L+DA  +F  M   +++V+W  +I   
Sbjct: 320 LARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGC 379

Query: 360 VQSG------------------------------------------------QSDVVVAS 371
           +Q+                                                 Q    V +
Sbjct: 380 IQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGT 439

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
           +++  Y+K    + A  +F  I  +DVV W+ +L+ Y+  G    A+ +F +M ++G+ P
Sbjct: 440 ALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKP 499

Query: 432 NIISWNSVILG------------------------------------FLRNGQMNEAKDM 455
           N  + +S I                                      + R G ++ A+ +
Sbjct: 500 NEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIV 559

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +        +L++W ++ISG  Q+    EA+  F++M   GI+    T    +  CT 
Sbjct: 560 FERQ----TDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTH 615

Query: 516 VASLRNGRA-IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
              ++ G+      ++ H++       + +VD+Y++ G + +   + +  P
Sbjct: 616 AGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMP 666


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/816 (29%), Positives = 418/816 (51%), Gaps = 95/816 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRN----FQIGPEIYGELLQGCVYKRDMYTGQQI 101
           S   +IS L +   +  A+D L      N         E  G LLQ C   +++  G+++
Sbjct: 70  SLLEEISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKL 129

Query: 102 HARILKNGDFFARNEYVETKLVVFYAKCDALDVASRL-FCRLRVKNVFSWAAIIGLNCRV 160
              +  +  F + +  + T+L+  Y+ C    + SRL F RL  KN+F W A++    R 
Sbjct: 130 DEMLCVSSQF-SGDFVLNTRLITMYSIC-GYPLESRLVFDRLLNKNLFQWNALVSGYVRN 187

Query: 161 GLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            L ++A+  F+E+       PDNF  P ++KAC     +  G++VHG  +K+G    +FV
Sbjct: 188 ELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFV 247

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM--TLE 277
            +++I +YGKCG L+EA ++FD M  +N+++WNS+I G+ +NG   EA R F  +  + +
Sbjct: 248 GNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGD 307

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G+ P   ++ ++L   +    +D G   H +AV  G+  + ++ +++I+ YSK G L +A
Sbjct: 308 GLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEA 367

Query: 338 EVVFSRMVERDIVTW--------------------------------------NLLIA-- 357
            ++F ++  + +V+W                                      NLL A  
Sbjct: 368 AILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACL 427

Query: 358 --------------SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
                         S   S Q   ++ ++ +  YAKC  +  A+ VF  +  + V  WN 
Sbjct: 428 EESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNA 487

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF------- 456
           ++  +A  G   +A   +++M   GI P+  S  S++L   R G +   K++        
Sbjct: 488 VIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNG 547

Query: 457 LQMQSLGV------------------------QPNLITWTTLISGLTQNSCGNEAILFFQ 492
           L+M S                             N + W  ++SG +QN   NEA+  F+
Sbjct: 548 LEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFR 607

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           +ML  G++P    I   L AC+ +++L  G+ +H + +++ L     +  SL+DMYAK G
Sbjct: 608 QMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSG 667

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
            +  ++R+F+    KE+  +N MI+G+ +HG   +A+ LF+++++    PD  TF  +L 
Sbjct: 668 FLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQ 727

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           AC HAGLV+EGL     M + ++++P +EH+ CV+++L R G L+EAL  I  MP +PDA
Sbjct: 728 ACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDA 787

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            I  SLLS+ +   + E+ E  +E LL LE +   +Y+ LSN YA +G+W+ V  VR  M
Sbjct: 788 KIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKM 847

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           K+  L+K+ GCSWI++  +++ F+A + S+P ++EI
Sbjct: 848 KDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEI 883


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/816 (29%), Positives = 418/816 (51%), Gaps = 95/816 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRN----FQIGPEIYGELLQGCVYKRDMYTGQQI 101
           S   +IS L +   +  A+D L      N         E  G LLQ C   +++  G+++
Sbjct: 70  SLLEEISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKL 129

Query: 102 HARILKNGDFFARNEYVETKLVVFYAKCDALDVASRL-FCRLRVKNVFSWAAIIGLNCRV 160
              +  +  F + +  + T+L+  Y+ C    + SRL F RL  KN+F W A++    R 
Sbjct: 130 DEMLCVSSQF-SGDFVLNTRLITMYSIC-GYPLESRLVFDRLLNKNLFQWNALVSGYVRN 187

Query: 161 GLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            L ++A+  F+E+       PDNF  P ++KAC     +  G++VHG  +K+G    +FV
Sbjct: 188 ELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFV 247

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM--TLE 277
            +++I +YGKCG L+EA ++FD M  +N+++WNS+I G+ +NG   EA R F  +  + +
Sbjct: 248 GNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGD 307

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G+ P   ++ ++L   +    +D G   H +AV  G+  + ++ +++I+ YSK G L +A
Sbjct: 308 GLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEA 367

Query: 338 EVVFSRMVERDIVTW--------------------------------------NLLIA-- 357
            ++F ++  + +V+W                                      NLL A  
Sbjct: 368 AILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACL 427

Query: 358 --------------SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
                         S   S Q   ++ ++ +  YAKC  +  A+ VF  +  + V  WN 
Sbjct: 428 EESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNA 487

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF------- 456
           ++  +A  G   +A   +++M   GI P+  S  S++L   R G +   K++        
Sbjct: 488 VIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNG 547

Query: 457 LQMQSLGV------------------------QPNLITWTTLISGLTQNSCGNEAILFFQ 492
           L+M S                             N + W  ++SG +QN   NEA+  F+
Sbjct: 548 LEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFR 607

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           +ML  G++P    I   L AC+ +++L  G+ +H + +++ L     +  SL+DMYAK G
Sbjct: 608 QMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSG 667

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
            +  ++R+F+    KE+  +N MI+G+ +HG   +A+ LF+++++    PD  TF  +L 
Sbjct: 668 FLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQ 727

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           AC HAGLV+EGL     M + ++++P +EH+ CV+++L R G L+EAL  I  MP +PDA
Sbjct: 728 ACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDA 787

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            I  SLLS+ +   + E+ E  +E LL LE +   +Y+ LSN YA +G+W+ V  VR  M
Sbjct: 788 KIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKM 847

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           K+  L+K+ GCSWI++  +++ F+A + S+P ++EI
Sbjct: 848 KDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEI 883


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/764 (30%), Positives = 373/764 (48%), Gaps = 97/764 (12%)

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           ++  A   L  M  +N       Y  LL+ C+  R+   G+ +H +++++G     +  V
Sbjct: 24  RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSG--LELDSVV 81

Query: 119 ETKLVVFYAKCDALDVASRLFCRL-RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177
              L+  Y+KC   + A  +F  +   +++ SW+A++       +  +A+  F++M E G
Sbjct: 82  LNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 141

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASSLIDMYGK-CGDLEE 235
             P+ +    V++AC    +   G  ++G+V+K G+ +  V V   LIDM+ K  GDL  
Sbjct: 142 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 201

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A KVFD M  RN+V W  MI  + Q G   +AI +F +M L G  P R + +S+LSA   
Sbjct: 202 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 261

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L  L  GKQ H+  +  G+ L                                       
Sbjct: 262 LGLLALGKQLHSRVIRLGLAL--------------------------------------- 282

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCE---RIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                     DV V  S+VDMYAKC     +D++++VF  +   +V+ W  ++ AY   G
Sbjct: 283 ----------DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSG 332

Query: 413 R-SGEASRLFYQMQLEGISPNIISW----------------------------------- 436
               EA  LF +M    I PN  S+                                   
Sbjct: 333 ECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVG 392

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           NS+I  + R+G+M +A+  F     +  + NL+++  ++ G  +N    EA L F E+ +
Sbjct: 393 NSLISMYARSGRMEDARKAF----DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIAD 448

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
           TGI  S  T    LS    + ++  G  IHG L++        I  +L+ MY++CGNI  
Sbjct: 449 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 508

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A +VF+    + +  + +MI+G+A HG A  AL +F  + + G  P+ IT+  +L+ACSH
Sbjct: 509 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 568

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            G+++EG + F  M+ +H + P MEH+ C+V+LL R G L EA+  I +MP   DA +  
Sbjct: 569 VGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWR 628

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +LL  C     TEL  + +E +L+ EPD+P  Y+ LSN +A++G+W +V ++R  MKE+ 
Sbjct: 629 TLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERN 688

Query: 737 LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           L K  GCSWI++   +H F   + SHP+  +IY  L  L   ++
Sbjct: 689 LIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIK 732



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 143/315 (45%), Gaps = 29/315 (9%)

Query: 32  KLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQ 87
           ++ ++  +++ L++    SY   +   +K  +  EA  L  E+      I    +  LL 
Sbjct: 404 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 463

Query: 88  GCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV 147
           G      M  G+QIH R+LK G  +  N+ +   L+  Y++C  ++ A ++F  +  +NV
Sbjct: 464 GAASIGAMGKGEQIHGRLLKGG--YKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV 521

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR----- 202
            SW ++I    + G + +AL  F +M E G  P+      VL AC  +G +  G+     
Sbjct: 522 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNS 581

Query: 203 --AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYV 259
               HG V ++    C      ++D+ G+ G L EA +  + M +  + + W +++    
Sbjct: 582 MYKEHGIVPRMEHYAC------MVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 635

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
            +G N E  R   EM LE  EP   +   +LS   NL A   G+    V +   M+  N+
Sbjct: 636 VHG-NTELGRHAAEMILEQ-EPDDPAAYILLS---NLHA-SAGQWKDVVKIRKSMKERNL 689

Query: 320 L---GSSIINFYSKV 331
           +   G S I   ++V
Sbjct: 690 IKEAGCSWIEVENRV 704


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/689 (32%), Positives = 355/689 (51%), Gaps = 47/689 (6%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR---VKNVFSWAAIIGL 156
           Q+H+  ++ G   +R+  V   LV   A+       +RL         K+   W   + +
Sbjct: 73  QLHSLAVRTG--LSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAM 130

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
                  ++A+  F EMQ  GV                      GRAVH Y LK+  D  
Sbjct: 131 LAEAEEWDEAIAVFREMQARGVPRRR------------------GRAVHAYALKLALDAH 172

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
             V   L  MY +  D+  A +V D M A +VV WN+++    + GL ++A+ +   M+ 
Sbjct: 173 PLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSR 232

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI-----NGMELDNVLGSSIINFYSKV 331
            G EP   +  ++LS  +       G+   A+ V+      G+  D    SS++   +  
Sbjct: 233 SGPEPNVATWNTVLSGCSR-----HGRDREALGVVASMLKQGLRPDATTVSSLLKSVANT 287

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
           GLL     +    +   +              + DV   +++VDMYAKC R+D A++VF+
Sbjct: 288 GLLRHGMEIHCFFLRNQL--------------EPDVYTGTALVDMYAKCGRLDCAQKVFD 333

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
           ++  R++  WN+L+A YA+ GR   A  L   M+   + P+I +WN +I G+  NGQ ++
Sbjct: 334 ALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQ 393

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A  +  Q+++ GV PN+++WT+LISG   N    ++  F  EM + G++PS  T++  L 
Sbjct: 394 AVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLR 453

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           AC  +A  + G+ +H + +R        + T+L+DMY+K G++  AK +F+    K L +
Sbjct: 454 ACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVL 513

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
            NAM++G A+HG   EA+ LF ++   G+ PDSITFT +L AC   GLV EG E F GM 
Sbjct: 514 CNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGME 573

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
           + + VKP+ E++ C+V+LL+RCG LDEA+  I   P DP A   G+LL+ C       LA
Sbjct: 574 TKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALA 633

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           E  + +L +LEP N  NY+ + N Y     ++E   ++  MK +G+   PG SWIQI + 
Sbjct: 634 EVAARNLFRLEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQG 693

Query: 752 LHVFVACDRSHPKTEEIYATLALLGMHVR 780
           +HVF    + HP+T EIY  L  L   ++
Sbjct: 694 IHVFEVDGKPHPETAEIYEELIRLVFQIK 722



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 187/435 (42%), Gaps = 61/435 (14%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S  S+  + REA+ ++  M  +  +        LL+       +  G +IH        
Sbjct: 246 LSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHC------- 298

Query: 111 FFARNE-----YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           FF RN+     Y  T LV  YAKC  LD A ++F  L  +N+ +W +++      G  + 
Sbjct: 299 FFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDI 358

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL     M+++ + PD               W G    + GY +       V +      
Sbjct: 359 ALELVELMKKNRLDPD------------ITTWNGL---ITGYSMNGQSSQAVLL------ 397

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
                      R++    +  NVV+W S+I G   NG  E++    +EM  +GV+P+ V+
Sbjct: 398 ----------LRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVT 447

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           ++ +L A A L    +GK+ H  A+    + D V+ +++I+ YSK G L  A+V+F  + 
Sbjct: 448 MSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQ 507

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           ++++V  N ++      GQ                E I+    ++NS +  D + +  LL
Sbjct: 508 QKNLVLCNAMLTGLAVHGQGR--------------EAIELFHDMWNSGLKPDSITFTALL 553

Query: 406 AAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
            A   +G   E    F  M+ + G+ P   ++  ++    R G ++EA D    ++   +
Sbjct: 554 TACRSMGLVTEGWEYFDGMETKYGVKPTTENYACMVDLLARCGYLDEAMDF---IERSPI 610

Query: 465 QPNLITWTTLISGLT 479
            P    W  L++G +
Sbjct: 611 DPGASHWGALLTGCS 625


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/733 (30%), Positives = 382/733 (52%), Gaps = 89/733 (12%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A +LF +  ++++     ++    R   +++AL  FV +   G+SPD++ +  VL  C  
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
                 G  VH   +K G    + V +SL+DMY K G++ + R+VFD M  R+VV+WNS+
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           + GY  N  N++   +F  M +EG  P   +V+++++A AN  A+  G Q HA+ V  G 
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGF 234

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY--------------- 359
           E + ++ +S+I+  SK G+L DA VVF  M  +D V+WN +IA +               
Sbjct: 235 ETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNN 294

Query: 360 ------------------------------------VQSGQS-DVVVASSIVDMYAKCER 382
                                               ++SG S +  V ++++    KC+ 
Sbjct: 295 MQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKE 354

Query: 383 IDNAKQVFNSII-LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           ID+A  +F+ +  ++ VV W  +++ Y   G + +A  LF  M+ EG+ PN  ++++++ 
Sbjct: 355 IDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILT 414

Query: 442 -------------------------------GFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
                                           F++ G +++A  +F  +++     ++I 
Sbjct: 415 VQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIET----KDVIA 470

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT-DVASLRNGRAIHGYL 529
           W+ +++G  Q     EA   F ++   GIKP+  T    ++ACT   AS+  G+  H Y 
Sbjct: 471 WSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYA 530

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
           I+  L     + +SLV +YAK GNI  A  +F     ++L  +N+MISGYA HG A +AL
Sbjct: 531 IKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKAL 590

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
            +F+ +Q++ ++ D+ITF  +++AC+HAGLV +G   F  M +DH + P+MEH+ C+++L
Sbjct: 591 EVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDL 650

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
            SR G L +A+ +I  MP  P A +   +L+        EL +  +E ++ LEP +   Y
Sbjct: 651 YSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAY 710

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           V LSN YAA+G W+E   VR +M ++ ++K PG SWI++  + + F+A D SHP ++ IY
Sbjct: 711 VLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIY 770

Query: 770 ATLALLGMHVRLV 782
           + L+ L   +R V
Sbjct: 771 SKLSELNTRLRDV 783


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/759 (30%), Positives = 374/759 (49%), Gaps = 100/759 (13%)

Query: 64  VDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV 123
           +DL+T+   +N       Y  LL+ C+  R+   G+ +H +++++G     +  V   L+
Sbjct: 14  LDLMTQ---QNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSG--LELDSVVLNTLI 68

Query: 124 VFYAKCDALDVASRLFCRL-RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
             Y+KC   + A  +F  +   +++ SW+A++       +  +A+  F++M E G  P+ 
Sbjct: 69  SLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNE 128

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASSLIDMYGK-CGDLEEARKVF 240
           +    V++AC    +   G  ++G+V+K G+ +  V V   LIDM+ K  GDL  A KVF
Sbjct: 129 YCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVF 188

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D M  RN+V W  MI  + Q G   +AI +F +M L G  P R + +S+LSA   L  L 
Sbjct: 189 DKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLA 248

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            GKQ H+  +  G+ L                                            
Sbjct: 249 LGKQLHSRVIRLGLAL-------------------------------------------- 264

Query: 361 QSGQSDVVVASSIVDMYAKCE---RIDNAKQVFNSIILRDVVLWNTLLAAYADLGR-SGE 416
                DV V  S+VDMYAKC     +D++++VF  +   +V+ W  ++ AY   G    E
Sbjct: 265 -----DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKE 319

Query: 417 ASRLFYQMQLEGISPNIISW-----------------------------------NSVIL 441
           A  LF +M    I PN  S+                                   NS+I 
Sbjct: 320 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS 379

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
            + R+G+M +A+  F     +  + NL+++  ++ G  +N    EA L F E+ +TGI  
Sbjct: 380 MYARSGRMEDARKAF----DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGI 435

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
           S  T    LS    + ++  G  IHG L++        I  +L+ MY++CGNI  A +VF
Sbjct: 436 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 495

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           +    + +  + +MI+G+A HG A  AL +F  + + G  P+ IT+  +L+ACSH G+++
Sbjct: 496 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 555

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           EG + F  M+ +H + P MEH+ C+V+LL R G L EA+  I +MP   DA +  +LL  
Sbjct: 556 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA 615

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C     TEL  + +E +L+ EPD+P  Y+ LSN +A++G+W +V ++R  MKE+ L K  
Sbjct: 616 CRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEA 675

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           GCSWI++   +H F   + SHP+  +IY  L  L   ++
Sbjct: 676 GCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIK 714



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 220/420 (52%), Gaps = 24/420 (5%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           R+A+DL  +M+   +      Y  +L  C     +  G+Q+H+R+++ G   A +  V  
Sbjct: 213 RDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG--LALDVCVGC 270

Query: 121 KLVVFYAKCDA---LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG-FVEMQED 176
            LV  YAKC A   +D + ++F ++   NV SW AII    + G  +K  I  F +M   
Sbjct: 271 SLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISG 330

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
            + P++F   +VLKACG L     G  V+ Y +K+G      V +SLI MY + G +E+A
Sbjct: 331 HIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA 390

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           RK FD +  +N+V++N+++ GY +N  +EEA  +F E+   G+  +  +  S+LS +A++
Sbjct: 391 RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASI 450

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            A+ +G+Q H   +  G + +  + +++I+ YS+ G +E A  VF+ M +R++++W  +I
Sbjct: 451 GAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMI 510

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
             + + G      A+  ++M+ K         +  +    + + +  +L+A + +G   E
Sbjct: 511 TGFAKHG-----FATRALEMFHK---------MLETGTKPNEITYVAVLSACSHVGMISE 556

Query: 417 ASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
             + F  M  E GI P +  +  ++    R+G + EA +    + S+ +  + + W TL+
Sbjct: 557 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEF---INSMPLMADALVWRTLL 613



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 143/315 (45%), Gaps = 29/315 (9%)

Query: 32  KLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQ 87
           ++ ++  +++ L++    SY   +   +K  +  EA  L  E+      I    +  LL 
Sbjct: 386 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 445

Query: 88  GCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV 147
           G      M  G+QIH R+LK G  +  N+ +   L+  Y++C  ++ A ++F  +  +NV
Sbjct: 446 GAASIGAMGKGEQIHGRLLKGG--YKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV 503

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR----- 202
            SW ++I    + G + +AL  F +M E G  P+      VL AC  +G +  G+     
Sbjct: 504 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNS 563

Query: 203 --AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYV 259
               HG V ++    C      ++D+ G+ G L EA +  + M +  + + W +++    
Sbjct: 564 MYKEHGIVPRMEHYAC------MVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 617

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
            +G N E  R   EM LE  EP   +   +LS   NL A   G+    V +   M+  N+
Sbjct: 618 VHG-NTELGRHAAEMILEQ-EPDDPAAYILLS---NLHA-SAGQWKDVVKIRKSMKERNL 671

Query: 320 L---GSSIINFYSKV 331
           +   G S I   ++V
Sbjct: 672 IKEAGCSWIEVENRV 686


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/720 (31%), Positives = 370/720 (51%), Gaps = 99/720 (13%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNF-VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
           G  E A+  +++  E G   + F   P ++KA G L  V  G+ +HG++LK GF   +FV
Sbjct: 17  GFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFV 76

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-- 277
            +SL+ MY KCG    A  +F+ M  R+ V+WN+MI G+ Q+G   +++ +F  M  E  
Sbjct: 77  KNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECG 136

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G    RV+  + LS+ A++  L  G + H   V  G++ D  L S++I  Y K G +++A
Sbjct: 137 GSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNA 196

Query: 338 EVVFSR-----MVERDIVTWNL----------------LIASYVQSGQS----------- 365
           E VF R     +V R++  WN+                L    ++ G S           
Sbjct: 197 ENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLV 256

Query: 366 -------------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
                                    DV V +++++MY KC   + + Q+F      ++V+
Sbjct: 257 LCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVM 316

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLE--------------------------------- 427
           W +++   A  G   EA   F +  L+                                 
Sbjct: 317 WGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAI 376

Query: 428 --GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
             G   ++    +++  + + G M  A+ +F  + +     +L++W  LISG  QN C +
Sbjct: 377 KMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLST----RDLVSWNALISGFAQNKCAD 432

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
           EA+  F++M    IKP+T T+ C LS CT ++ +   + +H YL+RH       +  SL+
Sbjct: 433 EALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSLI 492

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
             YAKCG+IH ++ VF+  P +    +N+++ G+ MHG   E  A F+ +++  I PD  
Sbjct: 493 SAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHG 552

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           TFT++L++CSH+G V+ G + F  M  D+ ++P +E + C+V+LL R GNL++A  +I++
Sbjct: 553 TFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMS 612

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MPC PD  I GSLL++C     T+LAE ++ H+ +L+  + G  V L+N Y  SG  NEV
Sbjct: 613 MPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSVGYRVLLANLYEDSGNLNEV 672

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
            +VR  +K+ GL+K PGCSWI++   +H+FVA D SH ++ +IYAT+  L + ++ V  V
Sbjct: 673 FRVRTDIKQMGLKKQPGCSWIEVDNSIHIFVAGDYSHDRSGDIYATIESLSLEMKRVGYV 732



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 190/443 (42%), Gaps = 73/443 (16%)

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEG--VEPTRVSVTSILSASANLDALDEGKQAHAVA 309
           N MI    ++G  E+AIRV+ +    G  VE  R     ++ A   L  +++GKQ H   
Sbjct: 7   NRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRF-FPCLIKAFGGLYDVNKGKQIHGHL 65

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----- 364
           +  G   D  + +S++  Y K G   +A  +F RM ERD V+WN +I+ + QSG      
Sbjct: 66  LKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSL 125

Query: 365 --------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLA 406
                          + V   + +   A  + + +  ++   ++ +    D  L + L+ 
Sbjct: 126 VMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIE 185

Query: 407 AYADLGRSGEASRLFYQMQL-EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
            Y   G    A  +F +++  E +  N+  WN +ILG++ N  ++ A ++F++M  LG+ 
Sbjct: 186 MYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGIS 245

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
           P+                                   ++T+   L  C+ +  L  G+ I
Sbjct: 246 PD-----------------------------------SSTVVVVLVLCSQLLDLAVGKQI 270

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           HG ++   L     + T+L++MY KCG+   + ++F  S +  L ++ +++   A +G  
Sbjct: 271 HGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYP 330

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSH-----AGLVNEGLELFVGMFSDHQVKPSM 640
            EAL  F         PD +     L ACS       G+   G  + +G  SD  V    
Sbjct: 331 NEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVG--- 387

Query: 641 EHFGCVVNLLSRCGNLDEALRVI 663
              G +V+   +CG+++ A +V 
Sbjct: 388 ---GALVDFYGKCGDMEYAQQVF 407



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 113/256 (44%), Gaps = 16/256 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  ++ K   EA+    +M+ +  +        +L  C +   M   +++H  +L++  
Sbjct: 422 ISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRH-- 479

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
           +F  N  V   L+  YAKC  +  +  +F +L V+N  +W +I+      G +++    F
Sbjct: 480 WFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATF 539

Query: 171 VEMQEDGVSPDNFVLPNVLKACGA-----LGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
            +M+E  + PD+    ++L +C        GW  F   +  Y L+      V   + ++D
Sbjct: 540 EKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPR----VEQYTCMVD 595

Query: 226 MYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG---LNEEAIRVFYEMTLEGVEP 281
           + G+ G+L +A  +   M  + +   W S++     +G   L E      +E+    V  
Sbjct: 596 LLGRAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSV-G 654

Query: 282 TRVSVTSILSASANLD 297
            RV + ++   S NL+
Sbjct: 655 YRVLLANLYEDSGNLN 670


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/683 (30%), Positives = 356/683 (52%), Gaps = 91/683 (13%)

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G+  + F  P+VLKAC     +  G+ VHG V+  GFD   FVA+SL+ +Y KCG   +A
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           R +FD +  R+VV+WN++   YV + ++ EA+ +F++M L G+ P   S++S+++    L
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
           +   +G++ H   +  G + D    +++++ Y+KVG+LEDA  VF  + + DIV+WN +I
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAII 184

Query: 357 ASYV----------------QSGQ------------------------------------ 364
           A  V                +SG                                     
Sbjct: 185 AGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMG 244

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
           SD  +   ++DMY+KC  +D+A+ VF  +  RD++ WN +++ ++      EA+ LF  M
Sbjct: 245 SDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLM 304

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP------------------ 466
             EGI  N  + ++V    L++    +A  M  Q+ +L ++                   
Sbjct: 305 HTEGIGFNQTTLSTV----LKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGK 360

Query: 467 -----------------NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
                            +L+ +T+L++   Q+  G EA+  + EM + GIKP +   +  
Sbjct: 361 CGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSL 420

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L+AC  +++   G+ +H ++++           SLV+MYAKCG+I  A   F   P + +
Sbjct: 421 LNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGI 480

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             ++AMI G A HG   EAL LFK + + G+ P+ IT  ++L AC+HAGLV E    F  
Sbjct: 481 VSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNS 540

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M     ++P  EH+ C+++LL R G L+ A+ ++  MP   +A + G+LL         +
Sbjct: 541 MKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNID 600

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           L E  +E LL LEP+  G +V L+N YA+ G W++V++VR +MK+  ++K PG SW+++ 
Sbjct: 601 LGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVK 660

Query: 750 EELHVFVACDRSHPKTEEIYATL 772
           ++++ F+  DRSH ++ EIYA L
Sbjct: 661 DKVYTFIVGDRSHSRSTEIYAKL 683



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 146/494 (29%), Positives = 237/494 (47%), Gaps = 35/494 (7%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ +L+  Y H            EAV L  +M     +        ++  C    D   G
Sbjct: 78  SWNALFSCYVHS-------DMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQG 130

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           ++IH  ++K G  +  + +    LV  YAK   L+ AS +F  +   ++ SW AII    
Sbjct: 131 RKIHGYLIKLG--YDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
                 +AL    EM + G+ P+ F L + LKAC  +     GR +H  ++K+      F
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSF 248

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           +   LIDMY KC  +++AR VF  M  R+++AWN++I G+ QN  +EEA  +F  M  EG
Sbjct: 249 LGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEG 308

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           +   + +++++L + A L A    +Q HA+++ +G E DN + +S+I+ Y K G +EDA 
Sbjct: 309 IGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDAT 368

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQS-----------------DVVVASSIVDMYAKCE 381
            VF      D+V +  L+ +Y Q GQ                  D  V SS+++  A   
Sbjct: 369 RVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLS 428

Query: 382 RIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
             +  KQV   I+    + D+   N+L+  YA  G   +AS  F ++ + G    I+SW+
Sbjct: 429 AYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRG----IVSWS 484

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LE 496
           ++I G  ++G   EA  +F QM  +GV PN IT  +++          EA  +F  M + 
Sbjct: 485 AMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKIL 544

Query: 497 TGIKPSTTTITCAL 510
            GI+P      C +
Sbjct: 545 FGIEPMQEHYACMI 558



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 206/478 (43%), Gaps = 102/478 (21%)

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M L G++    +  S+L A      L  GKQ H + V+ G + D  + +S++  Y+K G 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------------------ 363
             DA  +F  + +R +V+WN L + YV S                               
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 364 ----------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
                                  SD   A+++VDMYAK   +++A  VF+ I   D+V W
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LG--------- 442
           N ++A          A  L  +M   G+ PN+ + +S +          LG         
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 443 -------FLRNG---------QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                  FL  G          M++A+ +F  M     + ++I W  +ISG +QN    E
Sbjct: 241 MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMP----ERDMIAWNAVISGHSQNEEDEE 296

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           A   F  M   GI  + TT++  L +   + +    R IH   ++        +V SL+D
Sbjct: 297 AASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLID 356

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
            Y KCG++  A RVF+ SP  +L ++ ++++ YA  G   EAL L+  +Q +GI PDS  
Sbjct: 357 TYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFV 416

Query: 607 FTNILNACSHAGLVNEGLELFV-----GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
            +++LNAC+      +G ++ V     G  SD     S+      VN+ ++CG++++A
Sbjct: 417 CSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSL------VNMYAKCGSIEDA 468



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 180/356 (50%), Gaps = 6/356 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  S+ ++  EA  L   M              +L+     +  Y  +QIHA  LK+G 
Sbjct: 285 ISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSG- 343

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + YV   L+  Y KC  ++ A+R+F    + ++  + +++    + G  E+AL  +
Sbjct: 344 -FEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLY 402

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           +EMQ+ G+ PD+FV  ++L AC +L     G+ VH ++LK GF   +F  +SL++MY KC
Sbjct: 403 LEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKC 462

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E+A   F  +  R +V+W++MI G  Q+G  +EA+++F +M   GV P  +++ S+L
Sbjct: 463 GSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVL 522

Query: 291 SASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERD 348
            A  +   + E K   +++ ++ G+E      + +I+   + G LE A  + ++M  + +
Sbjct: 523 CACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQAN 582

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
            + W  L+ +       ++ +     +M    E   +   V  + I   V +W+ +
Sbjct: 583 ALVWGALLGA--ARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKV 636


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/576 (35%), Positives = 337/576 (58%), Gaps = 35/576 (6%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI   GK G + EAR+VF+ M  R+VV+W ++I GY++ G+ EEA  +F           
Sbjct: 72  LITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLF---DRNDAIKN 128

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVF 341
            V+ T+++S     + ++E ++     + + M + NV+  +++I  Y++ G ++ A  +F
Sbjct: 129 VVTWTALVSGYVRWNRIEEARR-----LFDAMPVKNVISWNTMIEGYARKGWIDQALDLF 183

Query: 342 SRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKCERIDNAKQ 388
             M ER++V+WN +I +++Q               + DV+  +++V   +K  RID+A+ 
Sbjct: 184 EXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARL 243

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           +F+ + +R+VV WNT++  YA   R  EA +LF QM    +S    SWN++I GF++NG+
Sbjct: 244 LFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELS----SWNTMITGFIQNGK 299

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTTIT 507
           +  A D F +M +     N++TWT +ISG  Q+    EA+  F EM     +KP+  T  
Sbjct: 300 LERAVDFFYKMSN----KNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFV 355

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-- 565
             L AC+ +A+L  G+ IH  + +        +V++L++MY+KCG +  A+++FD     
Sbjct: 356 SVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIG 415

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            +++  +N MI+ YA HG   +A++LF  +Q  G  PD++T+  +L+ACSHAGLV+EGL+
Sbjct: 416 HRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLK 475

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
           LF  +  D  +K   +HF C+V+L  R G L EA   I  +   P A +  +LL+ C   
Sbjct: 476 LFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVH 535

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
              +L +  +E LL+ EP+N G Y+ LSN YA++G+W E + VR  MK+KGL+K PGCSW
Sbjct: 536 GHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSW 595

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
           I++G  +HVFV  D SH + E IY  L L  +H ++
Sbjct: 596 IEVGNTVHVFVVGDNSHREFENIY--LLLHDLHTKM 629



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 141/547 (25%), Positives = 238/547 (43%), Gaps = 78/547 (14%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+ L KE +I EA  +  EM  R+               V    + TG      I +   
Sbjct: 73  ITQLGKEGKIGEARQVFEEMPDRD--------------VVSWTAVITGYIKCGMIEEAKT 118

Query: 111 FFARNEYVE-----TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            F RN+ ++     T LV  Y + + ++ A RLF  + VKNV SW  +I    R G  ++
Sbjct: 119 LFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQ 178

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH--GYVLKVGFDGCVFVASSL 223
           AL  F  M E  V   N V+   ++           R V     +     +  V   +++
Sbjct: 179 ALDLFEXMPERNVVSWNTVITAFMQR----------RRVDEAQELFNRMPERDVISWTTM 228

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           +    K G +++AR +FD M  RNVV+WN+MI+GY QN   +EA ++F +M    +    
Sbjct: 229 VAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWN 288

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFS 342
             +T  +           GK   AV     M   NV+  +++I+ + + G  E+A  +FS
Sbjct: 289 TMITGFIQ---------NGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFS 339

Query: 343 RMVERDIVTWN------------------------LLIASYVQSGQSDVVVASSIVDMYA 378
            M   + V  N                         +I+  V    +DVV  S++++MY+
Sbjct: 340 EMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVV--SALINMYS 397

Query: 379 KCERIDNAKQVFN--SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           KC  ++ A+++F+  SI  RDVV WN ++AAYA  G   +A  LF +MQ  G  P+ +++
Sbjct: 398 KCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTY 457

Query: 437 NSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
            +++      G ++E   +F  + +   ++     +T L+    +     EA  F + + 
Sbjct: 458 IALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL- 516

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV--DMYAKCGN 553
              +KPS +     L+ C     +  G+     L+  +   P    T LV  ++YA  G 
Sbjct: 517 --EVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETE---PENAGTYLVLSNIYASTGK 571

Query: 554 IHQAKRV 560
             +A  V
Sbjct: 572 WREAAGV 578



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 157/331 (47%), Gaps = 23/331 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   ++ LSK  +I +A  L  +M  RN               V    M  G   + R+
Sbjct: 224 SWTTMVAGLSKNGRIDDARLLFDKMPVRN--------------VVSWNTMIIGYAQNMRL 269

Query: 106 LKNGDFFARNEYVE----TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG 161
            +    F +    E      ++  + +   L+ A   F ++  KNV +W A+I  + + G
Sbjct: 270 DEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDG 329

Query: 162 LSEKALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
            SE+AL  F EMQ  + V P+     +VL AC  L  +  G+ +H  + K  +     V 
Sbjct: 330 RSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVV 389

Query: 221 SSLIDMYGKCGDLEEARKVF-DGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           S+LI+MY KCG+LE ARK+F DG I  R+VV+WN MI  Y  +G   +AI +F EM   G
Sbjct: 390 SALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALG 449

Query: 279 VEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
             P  V+  ++LSA ++   +DEG K    +     ++L     + +++ + + G L++A
Sbjct: 450 FRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEA 509

Query: 338 -EVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
            + +    V+     W  L+A     G  D+
Sbjct: 510 FDFIKGLEVKPSASVWAALLAGCNVHGHIDL 540



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 182/417 (43%), Gaps = 62/417 (14%)

Query: 362 SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG--------- 412
           S  S+V  ++ ++    K  +I  A+QVF  +  RDVV W  ++  Y   G         
Sbjct: 61  SANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLF 120

Query: 413 -----------------------RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
                                  R  EA RLF  M ++    N+ISWN++I G+ R G +
Sbjct: 121 DRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVK----NVISWNTMIEGYARKGWI 176

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           ++A D+F  M     + N+++W T+I+   Q    +EA   F  M E  +  S TT+   
Sbjct: 177 DQALDLFEXMP----ERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV-ISWTTMVAG 231

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM---YAKCGNIHQAKRVFDISPS 566
           LS        +NGR     L+     +P   V S   M   YA+   + +A ++F+  P 
Sbjct: 232 LS--------KNGRIDDARLLFDK--MPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPE 281

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           +EL  +N MI+G+  +G    A+  F  +  K +    +T+T +++     G   E L++
Sbjct: 282 RELSSWNTMITGFIQNGKLERAVDFFYKMSNKNV----VTWTAVISGHVQDGRSEEALKI 337

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL---RVILTMPCDPDAHIIGSLLSTCV 683
           F  M + + VKP+   F  V+   S+   L E     ++I        A ++ +L++   
Sbjct: 338 FSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYS 397

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
           K  E ELA  I +    +   +  ++  +  AYA  G  ++   + D M+  G R +
Sbjct: 398 KCGELELARKIFDD-GSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPD 453


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/782 (31%), Positives = 383/782 (48%), Gaps = 138/782 (17%)

Query: 95  MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA----------------------- 131
           + TGQ  HAR+L +G  F    +V   L+  YA+C                         
Sbjct: 47  LATGQAAHARMLVSG--FVPTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDTVSWNTML 104

Query: 132 --------LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF-VEMQEDGVSPDN 182
                     +A+ L C +   +V SW A++   C+ G+  + L+G  +EM   GV+PD 
Sbjct: 105 TAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMF-RDLVGLSIEMARCGVAPDR 163

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
             L  +LKACG L  +  G  +H   +K G +  V   S+L+DMYGKC  LE+A   F G
Sbjct: 164 TTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHG 223

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  RN V+W ++I G VQN           E  + G+E        +L     +  L   
Sbjct: 224 MGERNSVSWGAVIAGCVQN-----------EQYMRGLE--------LLCRCKAITCLSTA 264

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           +Q HA A+ N    D V+G++I++ Y+K   L DA   F  +    + T N ++   V++
Sbjct: 265 RQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRT 324

Query: 363 G-------------------------------------QSDVVVASSIVDMYAKCERIDN 385
           G                                       DV V ++I+D+Y KC+ +  
Sbjct: 325 GLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEVKGFDVDVCVRNAILDLYGKCKALVE 384

Query: 386 AKQVFNSIILRDVVLWNTLLAA------YAD-------LGRSG-EASRLFYQMQLE---- 427
           A  VF  +  RD V WNT++AA      Y D       + RSG EA    Y   L+    
Sbjct: 385 AYLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAG 444

Query: 428 -----------------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
                            G+  +    ++V+  + + G + EA  +      +G Q  L++
Sbjct: 445 LQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLH---DRIGGQ-ELVS 500

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W ++I+G + N    EA  FF EML+ G+KP   T    L +C ++A++  G+ IHG +I
Sbjct: 501 WNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQII 560

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           + ++     I ++LVDMYAKCGN+  ++ +F+     +   +NAMI GYA+HG   EAL 
Sbjct: 561 KQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYALHGQGFEALE 620

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           +F+  Q+  + P+  TF  +L ACSH GL+++G   F  M S ++++P +EHF C+    
Sbjct: 621 MFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMTSRYKLEPQLEHFACM---- 676

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
                  EAL+ I +MP + DA I  +LLS C    + E+AE  + ++L+L+PD+   Y+
Sbjct: 677 ----GPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYI 732

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            LSN YA SG+W +VS+ R +M++  L+K PGCSWI++  E+H F+  ++ HP++ E+Y 
Sbjct: 733 LLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLVGEKVHPRSREVYE 792

Query: 771 TL 772
            L
Sbjct: 793 ML 794



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 157/567 (27%), Positives = 263/567 (46%), Gaps = 101/567 (17%)

Query: 184 VLPNVLKACGALGW--VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
              +V + C + G   +  G+A H  +L  GF   +FV++ L+ MY +CG    A  VFD
Sbjct: 31  TFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFD 90

Query: 242 GMIARNVVAWNSMIV-------------------------------GYVQNGLNEEAIRV 270
            M  R+ V+WN+M+                                GY Q G+  + + +
Sbjct: 91  TMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGL 150

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK 330
             EM   GV P R ++  +L A   LD L  G Q HA+AV  G+E+D   GS++++ Y K
Sbjct: 151 SIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGK 210

Query: 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------------------- 364
              LEDA   F  M ER+ V+W  +IA  VQ+ Q                          
Sbjct: 211 CRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRGLELLCRCKAITCLSTARQLHAH 270

Query: 365 -------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                  SD VV ++IVD+YAK + + +A++ F  +    V   N ++      G   EA
Sbjct: 271 AIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEA 330

Query: 418 SRLFYQMQLEGISPNIISWNSV------ILGF-----LRNGQMN---------EAKDMFL 457
            +LF  M   GI   ++S + V      + GF     +RN  ++         EA  +F 
Sbjct: 331 MQLFQFMTRSGIGFGVVSLSGVFSACAEVKGFDVDVCVRNAILDLYGKCKALVEAYLVFQ 390

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
           +M+    Q + ++W T+I+ L QN C  + I+   EML +G++    T    L AC  + 
Sbjct: 391 EME----QRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQ 446

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           SL  G  +HG  I+  L L   + +++VDMY KCG I +A ++ D    +EL  +N++I+
Sbjct: 447 SLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNSIIA 506

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFS 632
           G++++  + EA   F  +   G+ PD  T+  +L++C++   +  G ++        M  
Sbjct: 507 GFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLG 566

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           D  +  ++      V++ ++CGN+ ++
Sbjct: 567 DEFISSTL------VDMYAKCGNMPDS 587



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 57/221 (25%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS-LVDMYAKCGNIHQAKRVFDISPSKE 568
           L A    ++L  G+A H  ++     +PT  V++ L+ MYA+CG    A  VFD  P ++
Sbjct: 38  LCASAGHSALATGQAAHARMLVSGF-VPTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRD 96

Query: 569 --------------------------LP-----VYNAMISGYAMHGLAVEALALFKNLQQ 597
                                     +P      +NA++SGY   G+  + + L   + +
Sbjct: 97  TVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMAR 156

Query: 598 KGIDPDSITFTNILNACS-----------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
            G+ PD  T   +L AC            HA  V  GLE+ V   S             +
Sbjct: 157 CGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGS------------AL 204

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
           V++  +C +L++AL     M  + ++   G++++ CV++ +
Sbjct: 205 VDMYGKCRSLEDALHFFHGMG-ERNSVSWGAVIAGCVQNEQ 244


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  381 bits (978), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/609 (35%), Positives = 330/609 (54%), Gaps = 60/609 (9%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDM--YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           + +H  ++K G     F  S LI+       G+L  A  +F+ +   N   WN+MI G  
Sbjct: 49  KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNS 108

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
            +     AI  +  M L GVEP   +   +L + A + A  EGKQ H   +  G+E D  
Sbjct: 109 LSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPF 168

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           + +S+IN Y++ G L  AE+VFS+   RD V++  LI  Y   G                
Sbjct: 169 VHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG---------------- 212

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------- 432
           C  +D+A+++F  I +RD V WN ++A YA  GR  EA   F +M+   ++PN       
Sbjct: 213 C--LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270

Query: 433 ---------------IISW-------------NSVILGFLRNGQMNEAKDMFLQMQSLGV 464
                          + SW             N++I  + + G +++A+D+F  +     
Sbjct: 271 LSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI----C 326

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
           + ++I+W  +I G +  +   EA+  F++M ++ ++P+  T    L AC  + +L  G+ 
Sbjct: 327 EKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKW 386

Query: 525 IHGYLIRHDLCLP-TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
           IH Y+ +  L L  T + TSL+DMYAKCGNI  AK+VF     K L  +NAMISG AMHG
Sbjct: 387 IHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHG 446

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
            A  AL LF+ ++ +G +PD ITF  +L+ACSHAGLV  G + F  M  D+ + P ++H+
Sbjct: 447 HANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHY 506

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
           GC+++LL R G  DEA  ++  M   PD  I GSLL  C      EL E+ ++HL +LEP
Sbjct: 507 GCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEP 566

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHP 763
           +NPG YV LSN YA +GRW++V+++R  + +KG++K PGCS I++   +H F+  D+ H 
Sbjct: 567 ENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHE 626

Query: 764 KTEEIYATL 772
           ++++IY  L
Sbjct: 627 QSQDIYKML 635



 Score =  179 bits (454), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 144/549 (26%), Positives = 237/549 (43%), Gaps = 93/549 (16%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYA--KCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           +QIH++I+K G      ++  +KL+ F A      L  A  LF  +   N F W  +I  
Sbjct: 49  KQIHSQIIKTG--LHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRG 106

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
           N        A+  +V M   GV P+++  P +LK+C  +G    G+ +HG+VLK+G +  
Sbjct: 107 NSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESD 166

Query: 217 VFVASSLIDMYGKCGD-------------------------------LEEARKVFDGMIA 245
            FV +SLI+MY + G+                               L++AR++F+ +  
Sbjct: 167 PFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPV 226

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           R+ V+WN+MI GY Q+G  EEA+  F EM    V P   ++ ++LSA A   +L+ G   
Sbjct: 227 RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWV 286

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ- 364
            +    +G+  +  L +++I+ YSK G L+ A  +F  + E+DI++WN++I  Y      
Sbjct: 287 RSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSY 346

Query: 365 -----------------SDVVVAS-----------------------------------S 372
                            +DV   S                                   S
Sbjct: 347 KEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTS 406

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           ++DMYAKC  I+ AKQVF  +  + +  WN +++  A  G +  A  LF QM+ EG  P+
Sbjct: 407 LIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPD 466

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
            I++  V+      G +   +  F  M +   + P L  +  +I  L +    +EA    
Sbjct: 467 DITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALM 526

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
           + M    +KP        L AC    ++  G     +L   +   P   V  L ++YA  
Sbjct: 527 KNM---EMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVL-LSNIYATA 582

Query: 552 GNIHQAKRV 560
           G      R+
Sbjct: 583 GRWDDVARI 591



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 209/444 (47%), Gaps = 48/444 (10%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG------------D 110
           A+D    M     +     +  LL+ C        G+QIH  +LK G            +
Sbjct: 116 AIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLIN 175

Query: 111 FFARNE---YVE--------------TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
            +A+N    Y E              T L+  Y     LD A RLF  + V++  SW A+
Sbjct: 176 MYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAM 235

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I    + G  E+AL  F EM+   V+P+   +  VL AC   G +  G  V  ++   G 
Sbjct: 236 IAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGL 295

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
              + + ++LIDMY KCGDL++AR +F+G+  +++++WN MI GY      +EA+ +F +
Sbjct: 296 GSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRK 355

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV-LGSSIINFYSKVG 332
           M    VEP  V+  SIL A A L ALD GK  HA      + L N  L +S+I+ Y+K G
Sbjct: 356 MQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCG 415

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
            +E A+ VF+ M  + + +WN +I+     G +++               ++  +Q+ + 
Sbjct: 416 NIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMA--------------LELFRQMRDE 461

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNE 451
               D + +  +L+A +  G      + F  M +   ISP +  +  +I    R G  +E
Sbjct: 462 GFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDE 521

Query: 452 AKDMFLQMQSLGVQPNLITWTTLI 475
           A+ +   M+++ ++P+   W +L+
Sbjct: 522 AEAL---MKNMEMKPDGAIWGSLL 542



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 20/239 (8%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I   S     +EA+ L  +M+  N +     +  +L  C Y   +  G+ IHA I K   
Sbjct: 337 IGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKK-- 394

Query: 111 FFA-RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
           F    N  + T L+  YAKC  ++ A ++F  ++ K++ SW A+I      G +  AL  
Sbjct: 395 FLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALEL 454

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA-----VHGYVL--KVGFDGCVFVASS 222
           F +M+++G  PD+     VL AC   G V  GR      V  Y +  K+   GC      
Sbjct: 455 FRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGC------ 508

Query: 223 LIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG---LNEEAIRVFYEMTLE 277
           +ID+ G+ G  +EA  +   M +  +   W S++     +G   L E A +  +E+  E
Sbjct: 509 MIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPE 567


>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
 gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
          Length = 733

 Score =  381 bits (978), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/688 (32%), Positives = 370/688 (53%), Gaps = 53/688 (7%)

Query: 102 HARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG 161
           HA I+  G+  A N ++ +KL+  YA       ++ +F     K+ F W +II  +   G
Sbjct: 52  HALIITTGN--ANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIKSHFSNG 109

Query: 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVFVA 220
              KA   +++M+ D   P+ F +P ++  C  L W+  G+ +HG V K G F     V 
Sbjct: 110 NYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVG 169

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           SS + MY KCG +E+A  +FD ++ R+VV+W ++++GYV N  +E+ +    EM   G +
Sbjct: 170 SSFVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGD 229

Query: 281 PTRVSVTSI---LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
             +V+  ++     A  NL A+  G+  H +AV  G+    V+ SS+++ YSK G +E+A
Sbjct: 230 GEKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEA 289

Query: 338 EVVFSRMVERDIVTW-----------------NLLIASYVQSGQSDVVVASSIVDMYAKC 380
              F ++V++D+ +W                 NL     V     D +V S I+  +   
Sbjct: 290 HNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNS 349

Query: 381 ERIDNAKQVFNSIILRDVVLWNT----LLAAYADLGRSGEASRLFYQMQLEGISP-NIIS 435
             +   K     I+ R+ VL +T    LL+ Y   G    A +LF     +G+   +  S
Sbjct: 350 MMVREGKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLF-----DGVHEWSKES 404

Query: 436 WNSVILGF-----LRNGQ------MNEAKDMFLQMQSLGV--------QPNLITWTTLIS 476
           WN+++ G+     ++N         N   DM+ +  +L +        Q +++TW TLIS
Sbjct: 405 WNTMVFGYVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRTQRDVVTWNTLIS 464

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
             T +    EAI  F EM+   + P++ T+   LSAC  + SL  G+ +H Y+      L
Sbjct: 465 SYTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFEL 524

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              + T+LVDMYAKCG + Q++ +F+    K++  +N MISGY +HG A  A+ +F+ ++
Sbjct: 525 NVSLGTALVDMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQME 584

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           Q  + P++ITF ++L+AC+HAG V+EG +LF  M   + +KP+++HF C+ +LL R GNL
Sbjct: 585 QSNVKPNAITFLSLLSACTHAGYVDEGKQLFDRM-QYYSIKPNLKHFACMADLLGRSGNL 643

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
            EA  ++ +MP  PD  + G+LLS C   NE E+   +++  ++ +P+N G Y+ LSN Y
Sbjct: 644 QEAEDLVQSMPICPDGGVWGTLLSACKIHNEIEIGIRVAKCAIESDPENDGYYIMLSNMY 703

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCS 744
            + G+W+E  + R++MKE+G+ K  G S
Sbjct: 704 GSMGKWDEAERARELMKERGIGKRAGWS 731


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  381 bits (978), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/547 (36%), Positives = 307/547 (56%), Gaps = 49/547 (8%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           GRA+H +++ +G     + A+ L+  Y +CG L  ARK+FD +   N+  W  +     +
Sbjct: 46  GRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACAR 105

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            G  EEA+  F EM  EG+ P +  + SIL A  +L     G+  H V + N  E     
Sbjct: 106 RGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFE----- 160

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
                                                       SD  + S+++ MY+KC
Sbjct: 161 --------------------------------------------SDAYIISALIYMYSKC 176

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             ++ A +VF+ I+ +D+V+ N +++ YA  G   EA  L  +MQ  G+ PN++SWN++I
Sbjct: 177 GHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLI 236

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
            GF + G  +   ++F  M + GV+P++++WT++ISG  QN   +E    F+EML+ G  
Sbjct: 237 AGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFC 296

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           PS+ TI+  L ACT+VA+LR+G+ IHGY +   +     + ++LVDMYAKCG I +AK +
Sbjct: 297 PSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKIL 356

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F + P +    +N++I GYA HG   EA+ LF  +++     D +TFT +LNACSHAG+V
Sbjct: 357 FYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMV 416

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
             G  LF  M   ++++P +EH+ C+V+LL R G L EA  +I  MP +PD  + G+LL 
Sbjct: 417 ELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLG 476

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C      ELAE  +EHL +LEP++PG+ + LSN YA +GRW   ++++ +MK++   K 
Sbjct: 477 ACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKF 536

Query: 741 PGCSWIQ 747
           PGCSWI+
Sbjct: 537 PGCSWIE 543



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 219/474 (46%), Gaps = 90/474 (18%)

Query: 73  RNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL 132
           R FQ   + Y + +      R +Y G+ +HA ++  G   AR  Y   KL+ FY +C  L
Sbjct: 21  RTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIG--LARLTYFAAKLMSFYTECGQL 78

Query: 133 DVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC 192
             A +LF ++   N+  W  + G   R G  E+AL  F EMQ++G+ P+ FVLP++LKAC
Sbjct: 79  SNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKAC 138

Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
           G L     G  +H  +LK  F+   ++ S+LI MY KCG +E+A +VFD ++ +++V  N
Sbjct: 139 GHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMN 198

Query: 253 SMIVGYVQNGLNEEAI-----------------------------------RVFYEMTLE 277
           +M+ GY Q+G   EA+                                    VF  MT  
Sbjct: 199 AMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTAN 258

Query: 278 GVEPTRVSVTSILS-----------------------------------ASANLDALDEG 302
           GVEP  VS TS++S                                   A  N+  L  G
Sbjct: 259 GVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHG 318

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           K+ H  A++ G+E D  + S++++ Y+K G + +A+++F  M ER+ VTWN LI  Y   
Sbjct: 319 KEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANH 378

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G  +              E I+   Q+  S    D + +  +L A +  G       LF 
Sbjct: 379 GYCN--------------EAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFR 424

Query: 423 QMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           +MQ +  I P +  +  ++    R G+++EA D+   ++++ V+P+   W  L+
Sbjct: 425 KMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDL---IKAMPVEPDKFVWGALL 475



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 14/256 (5%)

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
            + S+ T   A+       +L  GRA+H +L+   L   T     L+  Y +CG +  A+
Sbjct: 23  FQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNAR 82

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           ++FD  P+  +  +  +    A  G   EAL+ F  +Q++G+ P+     +IL AC H  
Sbjct: 83  KLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLS 142

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL----SRCGNLDEALRVILTMPCDPDAHI 674
               G  +   +     +K S E    +++ L    S+CG++++A RV      D D  +
Sbjct: 143 DRRTGENMHTVI-----LKNSFESDAYIISALIYMYSKCGHVEKACRV-FDWIVDKDLVV 196

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQ--LEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
           + +++S   +      A  + + + Q  ++P N  ++  L   ++  G  + VS+V  +M
Sbjct: 197 MNAMVSGYAQHGFVHEALNLVQKMQQAGVKP-NVVSWNTLIAGFSQVGDKSMVSEVFRLM 255

Query: 733 KEKGLRKNPGCSWIQI 748
              G+  +   SW  +
Sbjct: 256 TANGVEPDV-VSWTSV 270


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/547 (36%), Positives = 307/547 (56%), Gaps = 49/547 (8%)

Query: 201  GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
            GRA+H +++ +G     + A+ L+  Y +CG L  ARK+FD +   N+  W  +     +
Sbjct: 822  GRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACAR 881

Query: 261  NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
             G  EEA+  F EM  EG+ P +  + SIL A  +L     G+  H V + N  E     
Sbjct: 882  RGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFE----- 936

Query: 321  GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
                                                        SD  + S+++ MY+KC
Sbjct: 937  --------------------------------------------SDAYIISALIYMYSKC 952

Query: 381  ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
              ++ A +VF+ I+ +D+V+ N +++ YA  G   EA  L  +MQ  G+ PN++SWN++I
Sbjct: 953  GHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLI 1012

Query: 441  LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             GF + G  +   ++F  M + GV+P++++WT++ISG  QN   +E    F+EML+ G  
Sbjct: 1013 AGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFC 1072

Query: 501  PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            PS+ TI+  L ACT+VA+LR+G+ IHGY +   +     + ++LVDMYAKCG I +AK +
Sbjct: 1073 PSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKIL 1132

Query: 561  FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
            F + P +    +N++I GYA HG   EA+ LF  +++     D +TFT +LNACSHAG+V
Sbjct: 1133 FYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMV 1192

Query: 621  NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
              G  LF  M   ++++P +EH+ C+V+LL R G L EA  +I  MP +PD  + G+LL 
Sbjct: 1193 ELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLG 1252

Query: 681  TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
             C      ELAE  +EHL +LEP++PG+ + LSN YA +GRW   ++++ +MK++   K 
Sbjct: 1253 ACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKF 1312

Query: 741  PGCSWIQ 747
            PGCSWI+
Sbjct: 1313 PGCSWIE 1319



 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/620 (29%), Positives = 316/620 (50%), Gaps = 59/620 (9%)

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G  P    + + L  CG  G V  GR  H +V+K+G     FV +SLIDMY KCG+++ A
Sbjct: 108 GGFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSA 167

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
            +V+D M + +    N +I  Y +NG   +A +VF ++   G  P   + +++L+    +
Sbjct: 168 VRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTI 227

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            A+ EGKQ HA  V      +  +G++++  YSK G++E+AE+VF  + +R+I++W   I
Sbjct: 228 SAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASI 287

Query: 357 ASYVQSGQSDVVVAS----------------SIVDMYAKCERIDNAKQVFNSIILRD--- 397
             + Q G     +                  SIV     C +     ++F++ +++    
Sbjct: 288 NGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMA 347

Query: 398 --VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
             V +   ++  Y+ LG   EA + F QM   G + + +SWN++I G++ N ++ +A + 
Sbjct: 348 SGVFVGTAIIDMYSGLGEMDEAEKQFKQM---GRAASNVSWNALIAGYVLNEKIEKAMEA 404

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +M    V  N  T++ +                                     AC+ 
Sbjct: 405 FCRMVKEDVACNEFTYSNI-----------------------------------FKACSS 429

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
             SL     IH  LI+ ++     + +SL++ Y +CG++  A +VF      ++  +N++
Sbjct: 430 FPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSI 489

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I  Y+ +G   +A+ L + + ++G  P S TF  +L+ACSH+GLV EG E F  M  D+ 
Sbjct: 490 IKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYS 549

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           ++P   H  C+V++L R G L+ AL  I  +   P A I   LL+ C  ++  ++AEY++
Sbjct: 550 IQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVA 609

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           E +L LEP++   YV LSN YA  GRW +    R +M++K + K PGCSWI++  +++ F
Sbjct: 610 EKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKF 669

Query: 756 VACDRSHPKTEEIYATLALL 775
            + D++HP+  ++Y  L  L
Sbjct: 670 FSHDKAHPEMPKVYEKLKQL 689



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 219/474 (46%), Gaps = 90/474 (18%)

Query: 73   RNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL 132
            R FQ   + Y + +      R +Y G+ +HA ++  G   AR  Y   KL+ FY +C  L
Sbjct: 797  RTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIG--LARLTYFAAKLMSFYTECGQL 854

Query: 133  DVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC 192
              A +LF ++   N+  W  + G   R G  E+AL  F EMQ++G+ P+ FVLP++LKAC
Sbjct: 855  SNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKAC 914

Query: 193  GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
            G L     G  +H  +LK  F+   ++ S+LI MY KCG +E+A +VFD ++ +++V  N
Sbjct: 915  GHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMN 974

Query: 253  SMIVGYVQNGLNEEAI-----------------------------------RVFYEMTLE 277
            +M+ GY Q+G   EA+                                    VF  MT  
Sbjct: 975  AMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTAN 1034

Query: 278  GVEPTRVSVTSILS-----------------------------------ASANLDALDEG 302
            GVEP  VS TS++S                                   A  N+  L  G
Sbjct: 1035 GVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHG 1094

Query: 303  KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
            K+ H  A++ G+E D  + S++++ Y+K G + +A+++F  M ER+ VTWN LI  Y   
Sbjct: 1095 KEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANH 1154

Query: 363  GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
            G  +              E I+   Q+  S    D + +  +L A +  G       LF 
Sbjct: 1155 GYCN--------------EAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFX 1200

Query: 423  QMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            +MQ +  I P +  +  ++    R G+++EA D+   ++++ V+P+   W  L+
Sbjct: 1201 KMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDL---IKAMPVEPDKFVWGALL 1251



 Score =  175 bits (444), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 132/537 (24%), Positives = 250/537 (46%), Gaps = 65/537 (12%)

Query: 87  QGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN 146
           +GCV       G++ H  ++K G     +E+V T L+  YAKC  +D A R++ ++   +
Sbjct: 126 EGCVE-----LGRRWHCFVVKIG--LGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLD 178

Query: 147 VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHG 206
             +   +I    R G   +A   F+++   G  P+++    +L  CG +  +  G+ +H 
Sbjct: 179 AATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHA 238

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE 266
           +V+K+ +     V ++L+ +Y KCG +EEA  VF+ +  RN+++W + I G+ Q+G  ++
Sbjct: 239 HVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKK 298

Query: 267 AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIIN 326
           A++ F  M   G+EP   + + +L++   +    +G+  H   +  GM     +G++II+
Sbjct: 299 ALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIID 358

Query: 327 FYSKVGLLEDAEVVFSRMVE-RDIVTWNLLIASYVQSGQ--------------------- 364
            YS +G +++AE  F +M      V+WN LIA YV + +                     
Sbjct: 359 MYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEF 418

Query: 365 --SDVVVASS-----------------------------IVDMYAKCERIDNAKQVFNSI 393
             S++  A S                             +++ Y +C  ++NA QVF  I
Sbjct: 419 TYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQI 478

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
              DVV WN+++ AY+  G   +A  L  +M  EG  P   ++ +V+     +G + E +
Sbjct: 479 SDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQ 538

Query: 454 DMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           + F  M Q   +QP     + ++  L +      A+ F +++    +KP+ +     L+A
Sbjct: 539 EFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLT---MKPTASIWRPLLAA 595

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           C   ++L+    +   ++  +    T  VT L +MYA+ G    A+    +   KE+
Sbjct: 596 CRYNSNLQMAEYVAEKILDLEPNDATVYVT-LSNMYAEVGRWADAENQRRLMEQKEI 651



 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 184/780 (23%), Positives = 328/780 (42%), Gaps = 112/780 (14%)

Query: 33   LRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQG 88
            + E++  +ESL +    S+   I+   +    ++A+   + M+    +     +  +L  
Sbjct: 265  MEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLAS 324

Query: 89   CVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL-RVKNV 147
            C   +D   G+  H +++K G   A   +V T ++  Y+    +D A + F ++ R  + 
Sbjct: 325  CGCVKDFIDGRMFHTQVIKKG--MASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASN 382

Query: 148  FSWAAIIG---LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
             SW A+I    LN ++   EKA+  F  M ++ V+ + F   N+ KAC +   +     +
Sbjct: 383  VSWNALIAGYVLNEKI---EKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQI 439

Query: 205  HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
            H  ++K   +  + VASSLI+ Y +CG LE A +VF  +   +VV+WNS+I  Y QNG  
Sbjct: 440  HSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDP 499

Query: 265  EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-GMELDNVLGSS 323
             +AI +  +M  EG +PT  +  ++LSA ++   + EG++     V +  ++ +    S 
Sbjct: 500  WKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSC 559

Query: 324  IINFYSKVGLLEDAEVVFSRMVERDIVT-WNLLIAS--YVQSGQSDVVVASSIVDMYAKC 380
            +++   + G LE+A     ++  +   + W  L+A+  Y  + Q    VA  I+D+    
Sbjct: 560  MVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPN- 618

Query: 381  ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI-ISW--- 436
                            D  ++ TL   YA++GR  +A      M+ + IS     SW   
Sbjct: 619  ----------------DATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEV 662

Query: 437  NSVILGFLRNGQMN--------EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
            N+ +  F  + + +        + K +  Q+Q +G  P     TT +          + I
Sbjct: 663  NNKMYKFFSHDKAHPEMPKVYEKLKQLVRQIQDIGYSPP----TTTVLHPESRQPKEQLI 718

Query: 489  LFFQEMLET-----GIKPSTTT-ITCALSACTDVASLRNGRAIHGYLIR-HDLCLPTPI- 540
            L+  E L        + P     +   L  C D  S         Y+ R  D  +PTP+ 
Sbjct: 719  LYHSEKLAVCFGLLSLPPGKPIRVLKNLRVCLDCYSTMK------YISRITDRYIPTPLA 772

Query: 541  ----VTSLV---DMYAKCGNIHQAKRVFDISP---SKELPVY---NAMISGYAMHG-LAV 586
                + SL+   ++Y    NI    R F  S    +K + +Y    A+  G A+H  L +
Sbjct: 773  AAAAMQSLINRANVYRVYRNI-STHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVI 831

Query: 587  EALALFKNLQQKGID--------------PDSITFTNI------LNACSHAGLVNEGLEL 626
              LA       K +                D I  TNI        AC+  G   E L  
Sbjct: 832  IGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSA 891

Query: 627  FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL------RVILTMPCDPDAHIIGSLLS 680
            F  M     ++P+      + ++L  CG+L +         VIL    + DA+II +L+ 
Sbjct: 892  FSEM-QKEGLRPNQ---FVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIY 947

Query: 681  TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
               K    E A  + + ++     +     A+ + YA  G  +E   +   M++ G++ N
Sbjct: 948  MYSKCGHVEKACRVFDWIVD---KDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPN 1004



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 14/256 (5%)

Query: 499  IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
             + S+ T   A+       +L  GRA+H +L+   L   T     L+  Y +CG +  A+
Sbjct: 799  FQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNAR 858

Query: 559  RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
            ++FD  P+  +  +  +    A  G   EAL+ F  +Q++G+ P+     +IL AC H  
Sbjct: 859  KLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLS 918

Query: 619  LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL----SRCGNLDEALRVILTMPCDPDAHI 674
                G  +   +     +K S E    +++ L    S+CG++++A RV      D D  +
Sbjct: 919  DRRTGENMHTVI-----LKNSFESDAYIISALIYMYSKCGHVEKACRV-FDWIVDKDLVV 972

Query: 675  IGSLLSTCVKSNETELAEYISEHLLQ--LEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            + +++S   +      A  + + + Q  ++P N  ++  L   ++  G  + VS+V  +M
Sbjct: 973  MNAMVSGYAQHGFVHEALBLVQKMQQAGVKP-NVVSWNTLIAGFSQVGDKSMVSEVFRLM 1031

Query: 733  KEKGLRKNPGCSWIQI 748
               G+  +   SW  +
Sbjct: 1032 TANGVEPDV-VSWTSV 1046


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/649 (33%), Positives = 364/649 (56%), Gaps = 33/649 (5%)

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGY 207
           F + ++I      GL  +A++ F+ M   G+SPD +  P  L AC      G G  +HG 
Sbjct: 100 FMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL 159

Query: 208 VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267
           ++K+G+   +FV +SL+  Y +CG+L+ ARKVFD M  RNVV+W SMI GY +    ++A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219

Query: 268 IRVFYEMTL-EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIIN 326
           + +F+ M   E V P  V++  ++SA A L+ L+ G++ +A    +G+E+++++ S++++
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--QSDVVVASSIVDMYAKCERID 384
            Y K   ++ A+ +F      ++   N + ++YV+ G  +  + V + ++D   + +RI 
Sbjct: 280 MYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRIS 339

Query: 385 NAKQVFNSIILRDVVLW--------------------NTLLAAYADLGRSGEASRLFYQM 424
               + +   LR++ LW                    N L+  Y    R   A R+F +M
Sbjct: 340 MLSAISSCSQLRNI-LWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
                +  +++WNS++ G++ NG+++ A + F  M     + N+++W T+ISGL Q S  
Sbjct: 399 S----NKTVVTWNSIVAGYVENGEVDAAWETFETMP----EKNIVSWNTIISGLVQGSLF 450

Query: 485 NEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
            EAI  F  M  + G+     T+    SAC  + +L   + I+ Y+ ++ + L   + T+
Sbjct: 451 EEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTT 510

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           LVDM+++CG+   A  +F+   ++++  + A I   AM G A  A+ LF ++ ++G+ PD
Sbjct: 511 LVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPD 570

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            + F   L ACSH GLV +G E+F  M   H V P   H+GC+V+LL R G L+EA+++I
Sbjct: 571 GVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLI 630

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             MP +P+  I  SLL+ C      E+A Y +E +  L P+  G+YV LSN YA++GRWN
Sbjct: 631 EDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWN 690

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           ++++VR  MKEKGLRK PG S IQI  + H F + D SHP+   I A L
Sbjct: 691 DMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAML 739



 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 153/588 (26%), Positives = 279/588 (47%), Gaps = 64/588 (10%)

Query: 35  ESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGEL--LQGCVYK 92
           E+  SY + +  Y   I   +      EA+ L   M   N  I P+ Y     L  C   
Sbjct: 91  ENSESYGTCFM-YNSLIRGYASSGLCNEAILLFLRMM--NSGISPDKYTFPFGLSACAKS 147

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA 152
           R    G QIH  I+K G  +A++ +V+  LV FYA+C  LD A ++F  +  +NV SW +
Sbjct: 148 RAKGNGIQIHGLIVKMG--YAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTS 205

Query: 153 IIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV 211
           +I    R   ++ A+  F  M +++ V+P++  +  V+ AC  L  +  G  V+ ++   
Sbjct: 206 MICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS 265

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
           G +    + S+L+DMY KC  ++ A+++FD   A N+   N+M   YV+ GL  EA+ VF
Sbjct: 266 GIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVF 325

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
             M   GV P R+S+ S +S+ + L  +  GK  H   + NG E  + + +++I+ Y K 
Sbjct: 326 NLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKC 385

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
              + A  +F RM  + +VTWN ++A YV++G+                  +D A + F 
Sbjct: 386 HRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGE------------------VDAAWETFE 427

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWNSVILGFLRNGQMN 450
           ++  +++V WNT+++         EA  +F  MQ  EG++ + ++  S+       G ++
Sbjct: 428 TMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALD 487

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN------------------------- 485
            AK ++  ++  G+Q ++   TTL+   ++  CG+                         
Sbjct: 488 LAKWIYYYIEKNGIQLDVRLGTTLVDMFSR--CGDPESAMSIFNSLTNRDVSAWTAAIGA 545

Query: 486 --------EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
                    AI  F +M+E G+KP       AL+AC+    ++ G+ I   +++     P
Sbjct: 546 MAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSP 605

Query: 538 TPI-VTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISGYAMHG 583
             +    +VD+  + G + +A ++ +  P +   V +N++++   + G
Sbjct: 606 EDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQG 653


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/731 (31%), Positives = 372/731 (50%), Gaps = 91/731 (12%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y +   L  A  LF  +   +V +W  +I  + + G    A+  F  M++  V      L
Sbjct: 271 YIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTL 330

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
            +VL A G +  +  G  VH   +K+G    ++V SSL+ MY KC  +E A KVF+ +  
Sbjct: 331 GSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEE 390

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           +N V WN+MI GY  NG + + + +F +M   G      + TS+LS  A    L+ G Q 
Sbjct: 391 KNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQF 450

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY------ 359
           H++ +   +  +  +G+++++ Y+K G LEDA  +F RM +RD VTWN +I SY      
Sbjct: 451 HSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENE 510

Query: 360 ---------------------------------------------VQSG-QSDVVVASSI 373
                                                        V+ G   D+   SS+
Sbjct: 511 SEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSL 570

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           +DMY+KC  I +A++VF+S+    VV  N L+A Y+      EA  LF +M   G++P+ 
Sbjct: 571 IDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTRGVNPSE 629

Query: 434 ISWNSVI----------LGFLRNGQMNE----AKDMFLQMQSLGVQPN------------ 467
           I++ +++          LG   +GQ+ +    ++  +L +  LG+  N            
Sbjct: 630 ITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFS 689

Query: 468 -------LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
                  ++ WT ++SG +QN    EA+ F++EM   G+ P   T    L  C+ ++SLR
Sbjct: 690 ELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLR 749

Query: 521 NGRAIHG--YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMIS 577
            GRAIH   + + HDL   T    +L+DMYAKCG++  + +VFD +     +  +N++I+
Sbjct: 750 EGRAIHSLIFHLAHDLDELTS--NTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLIN 807

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
           GYA +G A +AL +F +++Q  I PD ITF  +L ACSHAG V++G ++F  M   + ++
Sbjct: 808 GYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIE 867

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
             ++H  C+V+LL R G L EA   I      PDA +  SLL  C    +    E  +E 
Sbjct: 868 ARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEK 927

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVA 757
           L++LEP N   YV LSN YA+ G W + + +R +M+++G++K PG SWI + +  H+F A
Sbjct: 928 LIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAA 987

Query: 758 CDRSHPKTEEI 768
            D+SH +  +I
Sbjct: 988 GDKSHSEIGKI 998



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 207/849 (24%), Positives = 353/849 (41%), Gaps = 185/849 (21%)

Query: 54  LSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG-DFF 112
           L    QI + +  +   +C+ F+   +++ E+ Q       +  G+ +H++ L  G D  
Sbjct: 38  LPSHDQIHQRLLEICLGQCKLFK-SRKVFDEMPQRLALA--LRIGKAVHSKSLILGIDSE 94

Query: 113 ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
            R   +   +V  YAKC  +  A + F  L  K+V +W +++ +   +G   K L  FV 
Sbjct: 95  GR---LGNAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVS 150

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           + E+ + P+ F    VL  C     V FGR +H  ++K+G +   +   +L+DMY KC  
Sbjct: 151 LFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDR 210

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           + +AR+VF+ ++  N V W  +  GYV+ GL EEA+ VF  M  EG  P           
Sbjct: 211 ISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRP----------- 259

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
                                   D++   ++IN Y ++G L+DA ++F  M   D+V W
Sbjct: 260 ------------------------DHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAW 295

Query: 353 NLLIASYVQSG------------------------------------------------- 363
           N++I+ + + G                                                 
Sbjct: 296 NVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIK 355

Query: 364 ---QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
               S++ V SS+V MY+KCE+++ A +VF ++  ++ V WN ++  YA  G S +   L
Sbjct: 356 LGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMEL 415

Query: 421 FYQMQLEG-----------------------------------ISPNIISWNSVILGFLR 445
           F  M+  G                                   ++ N+   N+++  + +
Sbjct: 416 FMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAK 475

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
            G + +A+ +F +M       + +TW T+I    Q+   +EA   F+ M   GI      
Sbjct: 476 CGALEDARQIFERM----CDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGAC 531

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           +   L ACT V  L  G+ +H   ++  L       +SL+DMY+KCG I  A++VF   P
Sbjct: 532 LASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLP 591

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC----------- 614
              +   NA+I+GY+ + L  EA+ LF+ +  +G++P  ITF  I+ AC           
Sbjct: 592 EWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQ 650

Query: 615 -----SHAGLVNEGLEL---FVGM-------------FSDHQVKPSMEHFGCVVNLLSRC 653
                +  G  +EG  L    +GM             FS+     S+  +  +++  S+ 
Sbjct: 651 FHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQN 710

Query: 654 GNLDEALRVILTMPCD---PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD-NPGNY 709
           G  +EAL+    M  D   PD     ++L  C   +       I   +  L  D +    
Sbjct: 711 GFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTS 770

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI----------GEELHVFVACD 759
             L + YA  G     SQV D M+    R++   SW  +           + L +F +  
Sbjct: 771 NTLIDMYAKCGDMKGSSQVFDEMR----RRSNVVSWNSLINGYAKNGYAEDALKIFDSMR 826

Query: 760 RSHPKTEEI 768
           +SH   +EI
Sbjct: 827 QSHIMPDEI 835



 Score =  228 bits (582), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 188/751 (25%), Positives = 328/751 (43%), Gaps = 139/751 (18%)

Query: 76  QIGPE--IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALD 133
           QI P    +  +L  C  + ++  G+QIH  ++K G    RN Y    LV  YAKCD + 
Sbjct: 155 QIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMG--LERNSYCGGALVDMYAKCDRIS 212

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACG 193
            A R+F  +   N   W  +     + GL E+A++ F  M+++G  PD+     V     
Sbjct: 213 DARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTV----- 267

Query: 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
                                         I+ Y + G L++AR +F  M + +VVAWN 
Sbjct: 268 ------------------------------INTYIRLGKLKDARLLFGEMSSPDVVAWNV 297

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           MI G+ + G    AI  F+ M    V+ TR ++ S+LSA   +  LD G   HA A+  G
Sbjct: 298 MISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLG 357

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS-------- 365
           +  +  +GSS+++ YSK   +E A  VF  + E++ V WN +I  Y  +G+S        
Sbjct: 358 LASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFM 417

Query: 366 --------------------------------------------DVVVASSIVDMYAKCE 381
                                                       ++ V +++VDMYAKC 
Sbjct: 418 DMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCG 477

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI------------ 429
            +++A+Q+F  +  RD V WNT++ +Y       EA  LF +M L GI            
Sbjct: 478 ALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLK 537

Query: 430 -----------------------SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
                                    ++ + +S+I  + + G + +A+ +F  +    V  
Sbjct: 538 ACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSV-- 595

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
             ++   LI+G +QN+   EA++ FQEML  G+ PS  T    + AC    SL  G   H
Sbjct: 596 --VSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFH 652

Query: 527 GYLIRHDLCLPTPIV-TSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGL 584
           G + +         +  SL+ MY     + +A  +F ++S  K + ++  M+SG++ +G 
Sbjct: 653 GQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGF 712

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS-DHQVKPSMEHF 643
             EAL  +K ++  G+ PD  TF  +L  CS    + EG  +   +F   H +     + 
Sbjct: 713 YEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSN- 771

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ--L 701
             ++++ ++CG++  + +V   M    +     SL++   K+   E A  I + + Q  +
Sbjct: 772 -TLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHI 830

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            PD    ++ +  A + +G+ ++  ++ ++M
Sbjct: 831 MPDEI-TFLGVLTACSHAGKVSDGRKIFEMM 860



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 160/308 (51%), Gaps = 9/308 (2%)

Query: 57  EKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNE 116
           +  + EAV L  EM  R        +  +++ C     +  G Q H +I K G F +  E
Sbjct: 607 QNNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRG-FSSEGE 665

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRV-KNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
           Y+   L+  Y     +  A  LF  L   K++  W  ++  + + G  E+AL  + EM+ 
Sbjct: 666 YLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRH 725

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
           DGV PD      VL+ C  L  +  GRA+H  +  +  D     +++LIDMY KCGD++ 
Sbjct: 726 DGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKG 785

Query: 236 ARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
           + +VFD M  R NVV+WNS+I GY +NG  E+A+++F  M    + P  ++   +L+A +
Sbjct: 786 SSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACS 845

Query: 295 NLDALDEGKQAHAVAVIN-GME--LDNVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIV 350
           +   + +G++   + +   G+E  +D+V  + +++   + G L++A + + ++ ++ D  
Sbjct: 846 HAGKVSDGRKIFEMMIGQYGIEARVDHV--ACMVDLLGRWGYLQEADDFIEAQNLKPDAR 903

Query: 351 TWNLLIAS 358
            W+ L+ +
Sbjct: 904 LWSSLLGA 911


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/649 (33%), Positives = 364/649 (56%), Gaps = 33/649 (5%)

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGY 207
           F + ++I      GL  +A++ F+ M   G+SPD +  P  L AC      G G  +HG 
Sbjct: 100 FMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL 159

Query: 208 VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267
           ++K+G+   +FV +SL+  Y +CG+L+ ARKVFD M  RNVV+W SMI GY +    ++A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219

Query: 268 IRVFYEMTL-EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIIN 326
           + +F+ M   E V P  V++  ++SA A L+ L+ G++ +A    +G+E+++++ S++++
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--QSDVVVASSIVDMYAKCERID 384
            Y K   ++ A+ +F      ++   N + ++YV+ G  +  + V + ++D   + +RI 
Sbjct: 280 MYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRIS 339

Query: 385 NAKQVFNSIILRDVVLW--------------------NTLLAAYADLGRSGEASRLFYQM 424
               + +   LR++ LW                    N L+  Y    R   A R+F +M
Sbjct: 340 MLSAISSCSQLRNI-LWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
                +  +++WNS++ G++ NG+++ A + F  M     + N+++W T+ISGL Q S  
Sbjct: 399 S----NKTVVTWNSIVAGYVENGEVDAAWETFETMP----EKNIVSWNTIISGLVQGSLF 450

Query: 485 NEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
            EAI  F  M  + G+     T+    SAC  + +L   + I+ Y+ ++ + L   + T+
Sbjct: 451 EEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTT 510

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           LVDM+++CG+   A  +F+   ++++  + A I   AM G A  A+ LF ++ ++G+ PD
Sbjct: 511 LVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPD 570

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            + F   L ACSH GLV +G E+F  M   H V P   H+GC+V+LL R G L+EA+++I
Sbjct: 571 GVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLI 630

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             MP +P+  I  SLL+ C      E+A Y +E +  L P+  G+YV LSN YA++GRWN
Sbjct: 631 EDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWN 690

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           ++++VR  MKEKGLRK PG S IQI  + H F + D SHP+   I A L
Sbjct: 691 DMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAML 739



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 153/588 (26%), Positives = 279/588 (47%), Gaps = 64/588 (10%)

Query: 35  ESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGEL--LQGCVYK 92
           E+  SY + +  Y   I   +      EA+ L   M   N  I P+ Y     L  C   
Sbjct: 91  ENSESYGTCFM-YNSLIRGYASSGLCNEAILLFLRMM--NSGISPDKYTFPFGLSACAKS 147

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA 152
           R    G QIH  I+K G  +A++ +V+  LV FYA+C  LD A ++F  +  +NV SW +
Sbjct: 148 RAKGNGIQIHGLIVKMG--YAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTS 205

Query: 153 IIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV 211
           +I    R   ++ A+  F  M +++ V+P++  +  V+ AC  L  +  G  V+ ++   
Sbjct: 206 MICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS 265

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
           G +    + S+L+DMY KC  ++ A+++FD   A N+   N+M   YV+ GL  EA+ VF
Sbjct: 266 GIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVF 325

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
             M   GV P R+S+ S +S+ + L  +  GK  H   + NG E  + + +++I+ Y K 
Sbjct: 326 NLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKC 385

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
              + A  +F RM  + +VTWN ++A YV++G+                  +D A + F 
Sbjct: 386 HRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGE------------------VDAAWETFE 427

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWNSVILGFLRNGQMN 450
           ++  +++V WNT+++         EA  +F  MQ  EG++ + ++  S+       G ++
Sbjct: 428 TMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALD 487

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN------------------------- 485
            AK ++  ++  G+Q ++   TTL+   ++  CG+                         
Sbjct: 488 LAKWIYYYIEKNGIQLDVRLGTTLVDMFSR--CGDPESAMSIFNSLTNRDVSAWTAAIGA 545

Query: 486 --------EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
                    AI  F +M+E G+KP       AL+AC+    ++ G+ I   +++     P
Sbjct: 546 MAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSP 605

Query: 538 TPI-VTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISGYAMHG 583
             +    +VD+  + G + +A ++ +  P +   V +N++++   + G
Sbjct: 606 EDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQG 653


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/608 (34%), Positives = 331/608 (54%), Gaps = 59/608 (9%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYG--KCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           + +H +++K G    +F  S LI+     + GD+  A  +F+ +   N+  WNSMI G  
Sbjct: 46  KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS 105

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
            +     A+  F  M   GVEP   +   +L + A L +  EGKQ HA  +  G   D  
Sbjct: 106 MSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVF 165

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           + +S+IN Y++ G + +A++VF +   RD +++  LIA Y   G                
Sbjct: 166 IHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGY--------------- 210

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------- 432
              +D A+Q+F+ + ++DVV WN ++A YA +GRS EA  LF  M+   + PN       
Sbjct: 211 ---MDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSV 267

Query: 433 ---------------IISW-------------NSVILGFLRNGQMNEAKDMFLQMQSLGV 464
                          + SW             N++I  + + G +  A+++F  M    +
Sbjct: 268 LSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDM----L 323

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
           + ++I+W  +I G T      EA+  F+EML +G++P+  T    L +C  + ++  G+ 
Sbjct: 324 ERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKW 383

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           IH Y+ ++   + T + TSL+D+YAKCGNI  A++VFD    K L  +NAMI G AMHG 
Sbjct: 384 IHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQ 443

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG 644
           A +A  LF  +   GI+P+ ITF  IL+AC HAGLV+ G + F  M  D+++ P  +H+G
Sbjct: 444 ADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYG 503

Query: 645 CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
           C+++LL R G  +EA  ++  M   PD  I GSLL  C      EL E ++E L +LEPD
Sbjct: 504 CMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPD 563

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPK 764
           NPG YV LSN YA +G+W++V+++R  + ++G++K PGC+ I++   +H F+  D+ HP+
Sbjct: 564 NPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQ 623

Query: 765 TEEIYATL 772
           +E+IY  L
Sbjct: 624 SEDIYRML 631



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 145/497 (29%), Positives = 241/497 (48%), Gaps = 74/497 (14%)

Query: 73  RNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL 132
           R  Q  P +  +LL  C   + + T +QIHA I+K G       +  +KL+ F A   + 
Sbjct: 25  RVLQEHPSL--KLLSKC---QSIRTFKQIHAHIIKTG--LHNTLFALSKLIEFSAVSRSG 77

Query: 133 DV--ASRLFCRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
           D+  A  LF  +   N+F W ++I GL+  +     AL+ FV M   GV P+++  P +L
Sbjct: 78  DISYAISLFNSIEEPNLFIWNSMIRGLSMSLS-PALALVFFVRMIYSGVEPNSYTFPFLL 136

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD----------------- 232
           K+C  L     G+ +H +VLK+GF   VF+ +SLI+MY + G+                 
Sbjct: 137 KSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAI 196

Query: 233 --------------LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
                         ++ AR++FD M  ++VV+WN+MI GY Q G ++EA+ +F +M    
Sbjct: 197 SFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKAN 256

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V P   ++ S+LSA A  +ALD G    +     G+  +  L +++I+ YSK G L+ A 
Sbjct: 257 VPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTAR 316

Query: 339 VVFSRMVERDIVTWNLLIASYVQ----------------SG-QSDVVVASSIVDMYAKCE 381
            +F  M+ERD+++WN++I  Y                  SG +   +   SI+   A   
Sbjct: 317 ELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLG 376

Query: 382 RIDNAKQV-------FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
            ID  K +       FNS+         +L+  YA  G    A ++F  M+++ ++    
Sbjct: 377 AIDLGKWIHAYINKNFNSVSTSLST---SLIDLYAKCGNIVAARQVFDGMKIKSLA---- 429

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           SWN++I G   +GQ ++A ++F +M S G++PN IT+  ++S        +    FF  M
Sbjct: 430 SWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSM 489

Query: 495 LET-GIKPSTTTITCAL 510
           ++   I P +    C +
Sbjct: 490 VQDYKISPKSQHYGCMI 506



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 139/508 (27%), Positives = 220/508 (43%), Gaps = 87/508 (17%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC--------------- 129
           LL+ C      + G+QIHA +LK G  F  + ++ T L+  YA+                
Sbjct: 135 LLKSCAKLASAHEGKQIHAHVLKLG--FVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNF 192

Query: 130 -DA---------------LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
            DA               +D A +LF  + VK+V SW A+I    ++G S++AL+ F +M
Sbjct: 193 RDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDM 252

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           ++  V P+   + +VL AC     +  G ++  ++   G    + + ++LIDMY KCGDL
Sbjct: 253 RKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDL 312

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           + AR++FD M+ R+V++WN MI GY      +EA+ +F EM   GVEPT ++  SIL + 
Sbjct: 313 QTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSC 372

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A+L A+D GK  HA    N   +   L +S+I+ Y+K G +  A  VF  M  + + +WN
Sbjct: 373 AHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWN 432

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
            +I      GQ+D                                               
Sbjct: 433 AMICGLAMHGQAD----------------------------------------------- 445

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWT 472
             +A  LF +M  +GI PN I++  ++      G ++  +  F  M Q   + P    + 
Sbjct: 446 --KAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYG 503

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
            +I  L +     EA    Q M    +KP        L AC D   +  G  +   L   
Sbjct: 504 CMIDLLGRAGLFEEAESLLQNM---EVKPDGAIWGSLLGACRDHGRVELGELVAERLFEL 560

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           +   P   V  L ++YA  G      R+
Sbjct: 561 EPDNPGAYVL-LSNIYAGAGKWDDVARI 587



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 16/203 (7%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           +EA+ L  EM     +     +  +L  C +   +  G+ IHA I KN  F + +  + T
Sbjct: 344 KEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKN--FNSVSTSLST 401

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            L+  YAKC  +  A ++F  +++K++ SW A+I      G ++KA   F +M  DG+ P
Sbjct: 402 SLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEP 461

Query: 181 DNFVLPNVLKACGALGWVGFGRA-----VHGYVL--KVGFDGCVFVASSLIDMYGKCGDL 233
           +      +L AC   G V  G+      V  Y +  K    GC      +ID+ G+ G  
Sbjct: 462 NEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGC------MIDLLGRAGLF 515

Query: 234 EEARKVFDGM-IARNVVAWNSMI 255
           EEA  +   M +  +   W S++
Sbjct: 516 EEAESLLQNMEVKPDGAIWGSLL 538


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 246/815 (30%), Positives = 397/815 (48%), Gaps = 114/815 (13%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           +I SL +++Q  EA+ L T+      +     Y  LL+ C    ++  G+ IH+ I+  G
Sbjct: 27  EIKSLVQQRQYIEALKLYTKSPVYTTRF---TYPSLLKACASLSNLQYGKTIHSSIITTG 83

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRL-----RVKNVFSWAAIIGLNCRVGLSE 164
                ++Y+ + L+  Y KC     A ++F +L      V +V  W +II    R G  E
Sbjct: 84  --LHSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLE 141

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
           + ++ F  MQ  G                       G+ +H Y+++   +   F+ ++LI
Sbjct: 142 EGMVQFGRMQSSGYKE--------------------GKQIHSYIVRNMLNFDPFLETALI 181

Query: 225 DMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           D Y KCG   EAR +F  +  R N+VAWN MI G+ +NGL E ++  +     E V+   
Sbjct: 182 DTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVS 241

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            S T  LSA    + +  GKQ H  A+  G E D  + +S++  Y K  ++E AE VF+ 
Sbjct: 242 SSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNE 301

Query: 344 MVERDIVTWNLLIASYVQSG---------------------------------------- 363
           + +++I  WN LI++YV +G                                        
Sbjct: 302 VPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLG 361

Query: 364 ------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
                       QS + + S+++ MY+K    + A  +F+++  RDVV W ++++ +   
Sbjct: 362 RLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQN 421

Query: 412 GRSGEASRLFYQMQLEGISPN------IIS----WNSVILGFLRNGQMNEAK---DMF-- 456
            +  EA   F  M+ + + P+      IIS       V LG   +G + ++    D+F  
Sbjct: 422 RKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVA 481

Query: 457 ---LQMQSLGVQP-------------NLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
              L M S    P             NL+ W ++IS   +N+  + +I  F ++L   + 
Sbjct: 482 SSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLY 541

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P + + T  L+A + VA+L  G+++HGYL+R  +     +  +L+DMY KCG +  A+ +
Sbjct: 542 PDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHI 601

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F+    K L  +N+MI GY  HG   +A+ LF  ++  GI PD +TF ++L++C+H+GL+
Sbjct: 602 FERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLI 661

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EGL LF  M     ++P MEH+  +V+L  R G L +A   +  MP +PD  I  SLL 
Sbjct: 662 EEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLC 721

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
           +C      EL E ++  LL +EP    NYV L N Y  +  W+  + +R  MKEKGL+K 
Sbjct: 722 SCKIHLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKT 781

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           PGCSWI++  ++ VF + D S P T EIY TL+ L
Sbjct: 782 PGCSWIEVRNKVDVFYSGDCSSPITTEIYDTLSSL 816


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 239/775 (30%), Positives = 381/775 (49%), Gaps = 97/775 (12%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNG--DFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
            L + C     +   +Q+H +I+  G  D  A    + ++++  Y  C  +     LF  
Sbjct: 49  SLFRACSDASVVQQARQVHTQIIVGGMSDVCA----LSSRVLGLYVLCGRISDGGNLFFG 104

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           L + N   W  +I     +G  + AL+ + +M    VSPD +  P V+KACG L  V   
Sbjct: 105 LELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLC 164

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             VH     +GF   +FV S+LI +Y   G + +AR+VFD +  R+ + WN M+ GYV++
Sbjct: 165 MVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKS 224

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G    A+  F  M         V+ T ILS  A       G Q H + + +G E D  + 
Sbjct: 225 GDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVA 284

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD--------------- 366
           ++++  YSK G L DA  +F+ M + D VTWN LIA YVQ+G +D               
Sbjct: 285 NTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVK 344

Query: 367 -------------------------------------VVVASSIVDMYAKCERIDNAKQV 389
                                                V + S+++D+Y K   ++ A+++
Sbjct: 345 PDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKI 404

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG------- 442
           F    L DV +   +++ Y   G + +A   F  +  EG+ PN ++  SV+         
Sbjct: 405 FQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAAL 464

Query: 443 ----------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
                                       + + G+++ A + F +M     + + I W ++
Sbjct: 465 KLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS----ETDSICWNSM 520

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           IS  +QN     A+  F++M  +G K  + +++ ALS+  ++ +L  G+ +HGY+IR+  
Sbjct: 521 ISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAF 580

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
              T + ++L+DMY+KCG +  A+ VF++   K    +N++I+ Y  HG A E L LF  
Sbjct: 581 SSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHE 640

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           + + G+ PD +TF  I++AC HAGLV EG+  F  M  ++ +   MEH+ C+V+L  R G
Sbjct: 641 MLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAG 700

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L EA   I +MP  PDA + G+LL  C      ELA+  S HLL+L+P N G YV LSN
Sbjct: 701 RLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSN 760

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
            +A +G W  V +VR +MKEKG++K PG SWI +    H+F A + +HP++ EIY
Sbjct: 761 VHADAGEWGSVLKVRRLMKEKGVQKIPGYSWIDVNGGTHMFSAAEGNHPESVEIY 815



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 212/458 (46%), Gaps = 58/458 (12%)

Query: 56  KEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARN 115
           K      A+     M+     +    Y  +L  C  +     G Q+H  ++ +G  F  +
Sbjct: 223 KSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSG--FEFD 280

Query: 116 EYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
             V   LV  Y+KC  L  A +LF  +   +  +W  +I    + G +++A   F  M  
Sbjct: 281 PQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMIS 340

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSLIDMYGKCGDL 233
            GV PD+    + L +    G +   + VH Y+++  V FD  V++ S+LID+Y K GD+
Sbjct: 341 AGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFD--VYLKSALIDIYFKGGDV 398

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           E ARK+F      +V    +MI GYV +GLN +AI  F  +  EG+ P  +++ S+L A 
Sbjct: 399 EMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPAC 458

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A L AL  GK+ H   +   +E    +GS+I + Y+K G L+ A   F RM E D + WN
Sbjct: 459 AALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWN 518

Query: 354 LLIASYVQSGQ------------------------------------------------- 364
            +I+S+ Q+G+                                                 
Sbjct: 519 SMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRN 578

Query: 365 ---SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
              SD  VAS+++DMY+KC ++  A+ VFN +  ++ V WN+++AAY + G + E   LF
Sbjct: 579 AFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLF 638

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           ++M   G+ P+ +++  +I      G + E    F  M
Sbjct: 639 HEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCM 676



 Score = 47.4 bits (111), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV-F 561
           TT +     AC+D + ++  R +H  +I   +     + + ++ +Y  CG I     + F
Sbjct: 44  TTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFF 103

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
            +     LP +N MI G  M G    AL  +  +    + PD  TF  ++ AC   GL N
Sbjct: 104 GLELCNALP-WNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC--GGLNN 160

Query: 622 EGLELFV 628
             L + V
Sbjct: 161 VPLCMVV 167


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/832 (28%), Positives = 399/832 (47%), Gaps = 143/832 (17%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           + + C  +R    G+Q HA ++ +G  F    +V   L+  Y  C  L  A++LF  + +
Sbjct: 55  VFKECAKQRAHELGKQAHAHMIISG--FRPTVFVSNCLLQLYINCGNLGYATKLFDGMPL 112

Query: 145 KNVFSWAAII-----------------GLNCRVGLSEKALIG--------------FVEM 173
           ++V SW A+I                  +  R  +S  +++               F+EM
Sbjct: 113 RDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEM 172

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              GV  DN     +LK C  L     G  +HG  L++G+D  V   S+L+DMY KC  L
Sbjct: 173 GRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRL 232

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           +E+  VF  M  +N ++W+++I G VQN   +  +++F EM   GV  ++    S+L + 
Sbjct: 233 DESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSC 292

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A L  L  G Q HA A+ +    D ++ ++ ++ Y+K   ++DA+ +F      ++ ++N
Sbjct: 293 ATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYN 352

Query: 354 LLIASYVQSGQS------------------------------------------------ 365
            +I  Y Q                                                    
Sbjct: 353 AMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLATKS 412

Query: 366 ----DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
               ++ VA++ +DMY KCE +D A +VF+ +  +D V WN ++AA+       +   + 
Sbjct: 413 NFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNIL 472

Query: 422 YQMQLEGISPNIISWNSVI--------------------LGFLRN--------------G 447
             M   G+ P+  ++ SV+                    LG   N              G
Sbjct: 473 VSMLRSGMEPDEYTFGSVLKACAGDSLNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCG 532

Query: 448 QMNEAKDMFLQM-----------------------QSLGVQPNLITWTTLISGLTQNSCG 484
            ++EA+ +  ++                       Q   VQ  +++W  +ISG       
Sbjct: 533 MIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQS 592

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
            +A  FF  M+E GI P   T +  L  C ++AS+  G+ IH ++I+ +L     I ++L
Sbjct: 593 EDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTL 652

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           VDMY+KCGN+H ++ +F+ +P ++   +NAMI GYA HG+  EA+ LF+++    I P+ 
Sbjct: 653 VDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNH 712

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
            TF ++L AC+H GLV  GL+ F  M  ++ + P +EH+  +V++L + G +++AL +I 
Sbjct: 713 ATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYSNMVDILGKSGEVEKALELIQ 772

Query: 665 TMPCDPDAHIIGSLLSTC-VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
            MP + D  I  +LLS C +  N  E AE  +  LL+L+P +   Y+ LSN YA +G W+
Sbjct: 773 EMPFEADDVIWRTLLSACKINRNNVEAAEVAANALLRLDPQDSSTYILLSNIYADAGMWD 832

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           + S++R  M+   L+K PGCSW++I +E H F+  D++HP+ +EIY  LAL+
Sbjct: 833 KASELRTAMRSDKLKKEPGCSWVEIRDEFHTFLVGDKAHPRWKEIYNGLALI 884



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 139/533 (26%), Positives = 253/533 (47%), Gaps = 73/533 (13%)

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           V  ++   S  NF    V K C        G+  H +++  GF   VFV++ L+ +Y  C
Sbjct: 40  VNHEKPATSVANFSF--VFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINC 97

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGY-------------------------------V 259
           G+L  A K+FDGM  R+VV+WN+MI GY                               +
Sbjct: 98  GNLGYATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFL 157

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           Q G N E+++VF EM   GVE    S + IL   + L+    G Q H +A+  G + D V
Sbjct: 158 QTGENLESVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVV 217

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
            GS++++ Y+K   L+++  VF  M +++ ++W+ +IA  VQ+   D       + M+ +
Sbjct: 218 SGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLD-----GGLKMFKE 272

Query: 380 CERID-NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS--- 435
            +++     Q   + +L+         A   DL       RL  Q+    +  + +    
Sbjct: 273 MQKVGVGVSQSIYASVLKSC-------ATLPDL-------RLGTQLHAHALKSDFVKDGI 318

Query: 436 -WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
              + +  + +   M +A+ +F   ++L    NL ++  +I+G +Q   G  A+L F+++
Sbjct: 319 VRTATLDMYAKCNNMQDAQRLFDMSENL----NLQSYNAMITGYSQKDNGFRALLLFRKL 374

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
            ++ +     +++ AL AC  V  L  G  +HG   + +      +  + +DMY KC  +
Sbjct: 375 SKSSLGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEAL 434

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
            +A RVFD    K+   +NA+I+ +  +    + L +  ++ + G++PD  TF ++L AC
Sbjct: 435 DEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKAC 494

Query: 615 SHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
           +   L N G+E+      +GM S+  +  S+      V++ S+CG +DEA ++
Sbjct: 495 AGDSL-NHGMEIHTTIVKLGMASNPYIGSSL------VDMYSKCGMIDEAEKI 540


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/736 (30%), Positives = 382/736 (51%), Gaps = 110/736 (14%)

Query: 150 WAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL 209
           W  ++    R  L  +A++ +++M   G+ PDNF  P +LKA   L  +  G+ +H +V 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 210 KVGFD-GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
           K G+    V VA++L+++Y KCGD     KVFD +  RN V+WNS+I         E A+
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 269 RVFYEMTLEGVEPTRVSVTSILSASANL---DALDEGKQAHAVAVINGMELDNVLGSSII 325
             F  M  E VEP+  ++ S+  A +N    + L  GKQ HA  +  G EL++ + ++++
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLV 239

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLI----------------------------- 356
             Y K+G L  ++V+      RD+VTWN ++                             
Sbjct: 240 AMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGF 299

Query: 357 ----------------------ASYVQSGQSD--VVVASSIVDMYAKCERIDNAKQVFNS 392
                                 A  +++G  D    V S++VDMY  C+++ +  +VF+ 
Sbjct: 300 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDG 359

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ-----------LEGISPNII-----SW 436
           +  R + LWN ++  YA      EA  LF +M+           + G+ P  +     S 
Sbjct: 360 MFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK 419

Query: 437 NSVILGFL--------------------RNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
              I GF+                    R G+++ AK +F +M+      +L+TW T+I+
Sbjct: 420 KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKME----DRDLVTWNTIIT 475

Query: 477 GLTQNSCGNEAILFFQEM--LE---------TGIKPSTTTITCALSACTDVASLRNGRAI 525
           G   +    +A+L   +M  LE           +KP++ T+   L +C  +++L  G+ I
Sbjct: 476 GYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEI 535

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           H Y I+++L     + ++LVDMYAKCG +  +++VFD  P + +  +N ++  Y MHG +
Sbjct: 536 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNS 595

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            +A+ + + +  +G+ P+ +TF ++  ACSH+G+VNEGL++F  M  D+ V+PS +H+ C
Sbjct: 596 QDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYAC 655

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
           VV+LL R G + EA ++I  +P + D A    SLL  C   N  E+ E  +++L+QLEP+
Sbjct: 656 VVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPN 715

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPK 764
              +YV L+N Y+++G W + ++VR  MK +G+RK PGCSWI+ G+E+H FVA D SHP+
Sbjct: 716 VASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQ 775

Query: 765 TEEIYATLALLGMHVR 780
           +E++   L  L   +R
Sbjct: 776 SEKLRGYLETLWERMR 791


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/734 (31%), Positives = 368/734 (50%), Gaps = 97/734 (13%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y     L  A  LF  +   +V +W  +I  + + G    A+  F+ M++  V      L
Sbjct: 271 YISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTL 330

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
            +VL A G +  +  G  VH   +K+G    ++V SSL+ MY KC  +E A KVF+ +  
Sbjct: 331 GSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEE 390

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           RN V WN+MI GY  NG + + + +F +M   G      + TS+LS  A    L+ G Q 
Sbjct: 391 RNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQF 450

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY------ 359
           H++ +   +  +  +G+++++ Y+K G LEDA  +F  M +RD V+WN +I  Y      
Sbjct: 451 HSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENE 510

Query: 360 ---------------------------------------------VQSGQSDVV-VASSI 373
                                                        V+ G   V+   SS+
Sbjct: 511 SEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSL 570

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           +DMY+KC  I++A++VF+S+    VV  N L+A Y+      EA  LF +M  +G++P+ 
Sbjct: 571 IDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTKGVNPSE 629

Query: 434 ISWNSVI---------------------LGFLRNGQ---------------MNEAKDMFL 457
           I++ +++                      GF   G+               M EA  +F 
Sbjct: 630 ITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFS 689

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
           ++ S     +++ WT ++SG +QN    EA+ F++EM   G  P   T    L  C+ ++
Sbjct: 690 ELSS---PKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLS 746

Query: 518 SLRNGRAIHG--YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNA 574
           SLR GRAIH   + + HDL   T    +L+DMYAKCG++  + +VFD +     +  +N+
Sbjct: 747 SLREGRAIHSLIFHLAHDLDELTS--NTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNS 804

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           +I+GYA +G A +AL +F +++Q  I PD ITF  +L ACSHAG V++G ++F  M   +
Sbjct: 805 LINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQY 864

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            ++  ++H  C+V+LL R G L EA   I      PDA +  SLL  C    +    E  
Sbjct: 865 GIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDMRGEIA 924

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           +E L++LEP N   YV LSN YA+ GRW E + +R  M+++G++K PG SWI +G+  H+
Sbjct: 925 AERLIELEPQNSSAYVLLSNIYASQGRWEEANALRKAMRDRGVKKVPGYSWIDVGQRRHI 984

Query: 755 FVACDRSHPKTEEI 768
           F A D+SH    +I
Sbjct: 985 FAAGDQSHSDIGKI 998



 Score =  238 bits (607), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 203/805 (25%), Positives = 335/805 (41%), Gaps = 182/805 (22%)

Query: 98  GQQIHARILKNG-DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           G+ +H++ L  G D   R   +   +V  YAKC  +  A + F  L  K+V +W +++ +
Sbjct: 79  GKAVHSKSLILGIDSEGR---LGNAIVDLYAKCAQVSYAEKQFNSLE-KDVTAWNSMLSM 134

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
              +G   K L  FV + E+ + P+ F    VL        V FGR +H  ++K+G +  
Sbjct: 135 YSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERN 194

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            +   +L+DMY KC  L +A++VFDG++  N V W  +  GYV+ GL EEA+ VF  M  
Sbjct: 195 SYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRG 254

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           EG  P                                   D++   ++IN Y  +G L+D
Sbjct: 255 EGHRP-----------------------------------DHLAFVTVINTYISLGKLKD 279

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG--------------------------------- 363
           A ++F  M   D+V WN++I+ + + G                                 
Sbjct: 280 ARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGI 339

Query: 364 -------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                               S++ V SS+V MY+KCE+++ A +VF ++  R+ VLWN +
Sbjct: 340 VANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAM 399

Query: 405 LAAYADLGRSGEASRLFYQMQLEG-----------------------------------I 429
           +  YA  G S +   LF  M+  G                                   +
Sbjct: 400 IRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKL 459

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
           + N+   N+++  + + G + +A+ +F  M       + ++W T+I G  Q+   +EA  
Sbjct: 460 TKNLFVGNALVDMYAKCGALEDARQIFEHM----CDRDNVSWNTIIGGYVQDENESEAFD 515

Query: 490 FFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
            F  M   GI      +   L ACT+V  L  G+ +H   ++  L       +SL+DMY+
Sbjct: 516 LFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYS 575

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           KCG I  A++VF   P   +   NA+I+GY+ + L  EA+ LF+ +  KG++P  ITF  
Sbjct: 576 KCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTKGVNPSEITFAT 634

Query: 610 ILNACSHA----------------GLVNEG-------LELFV---------GMFSDHQVK 637
           I+ AC                   G  +EG       L L++          +FS+    
Sbjct: 635 IVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSP 694

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCD---PDAHIIGSLLSTCVKSNETELAEYI 694
            S+  +  +++  S+ G  +EAL+    M  D   PD     ++L  C   +       I
Sbjct: 695 KSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAI 754

Query: 695 SEHLLQLEPD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI----- 748
              +  L  D +      L + YA  G     SQV D M+    R++   SW  +     
Sbjct: 755 HSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMR----RRSNVVSWNSLINGYA 810

Query: 749 -----GEELHVFVACDRSHPKTEEI 768
                 + L +F +  +SH   +EI
Sbjct: 811 KNGYAEDALKIFDSMRQSHIMPDEI 835



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 157/594 (26%), Positives = 278/594 (46%), Gaps = 47/594 (7%)

Query: 36  SDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDM 95
           +D  + ++ + Y H   S        + ++L  +MK   + I    +  LL  C    D+
Sbjct: 392 NDVLWNAMIRGYAHNGES-------HKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDL 444

Query: 96  YTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
             G Q H+ I+K      +N +V   LV  YAKC AL+ A ++F  +  ++  SW  IIG
Sbjct: 445 EMGSQFHSIIIKKK--LTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIG 502

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
              +     +A   F+ M   G+  D   L + LKAC  +  +  G+ VH   +K G D 
Sbjct: 503 GYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDR 562

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            +   SSLIDMY KCG +E+ARKVF  M   +VV+ N++I GY QN L EEA+ +F EM 
Sbjct: 563 VLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNNL-EEAVVLFQEML 621

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD-NVLGSSIINFYSKVGLL 334
            +GV P+ ++  +I+ A    ++L  G Q H   +  G   +   LG S++  Y     +
Sbjct: 622 TKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRM 681

Query: 335 EDAEVVFSRMVE-RDIVTWNLLIASYVQSGQSDVVVA--------------SSIVDMYAK 379
            +A  +FS +   + IV W  +++ + Q+G  +  +               ++ V +   
Sbjct: 682 AEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRV 741

Query: 380 CERIDNAKQ--VFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           C  + + ++    +S+I       D +  NTL+  YA  G    +S++F +M+      N
Sbjct: 742 CSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRR---SN 798

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
           ++SWNS+I G+ +NG   +A  +F  M+   + P+ IT+  +++  +     ++    F+
Sbjct: 799 VVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFE 858

Query: 493 EML-ETGIKPSTTTITCALSACTDVASLRNGRA-IHGYLIRHDLCLPTPIVTSLV----D 546
            M+ + GI+     + C +        L+     I    ++ D  L + ++ +      D
Sbjct: 859 MMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDD 918

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
           M  +      A+R+ ++ P      Y  + + YA  G   EA AL K ++ +G+
Sbjct: 919 MRGEIA----AERLIELEPQNS-SAYVLLSNIYASQGRWEEANALRKAMRDRGV 967



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 215/429 (50%), Gaps = 65/429 (15%)

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
           AL  GK  H+ ++I G++ +  LG++I++ Y+K   +  AE  F+ + E+D+  WN +++
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLS 133

Query: 358 SYVQSGQSDVVVAS---------------------------------------------- 371
            Y   GQ   V+ S                                              
Sbjct: 134 MYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLER 193

Query: 372 ------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
                 ++VDMYAKC+R+ +A++VF+ I+  + V W  L + Y   G   EA  +F +M+
Sbjct: 194 NSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMR 253

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
            EG  P+ +++ +VI  ++  G++ +A+ +F +M S    P+++ W  +ISG  +  C  
Sbjct: 254 GEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPS----PDVVAWNVMISGHGKRGCEI 309

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
            AI +F  M ++ +K + +T+   LSA   VA+L  G  +H   I+  L     + +SLV
Sbjct: 310 VAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLV 369

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
            MY+KC  +  A +VF+    +   ++NAMI GYA +G + + + LF +++  G + D  
Sbjct: 370 SMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDF 429

Query: 606 TFTNILNACSHAGLVNEGLEL---FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
           TFT++L+ C+    V+  LE+   F  +    ++  ++     +V++ ++CG L++A R 
Sbjct: 430 TFTSLLSTCA----VSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDA-RQ 484

Query: 663 ILTMPCDPD 671
           I    CD D
Sbjct: 485 IFEHMCDRD 493



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 14/210 (6%)

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           +LR G+A+H   +   +     +  ++VD+YAKC  +  A++ F+ S  K++  +N+M+S
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFN-SLEKDVTAWNSMLS 133

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
            Y+  G   + L  F +L +  I P+  TF+ +L+  +    V  G ++   M     +K
Sbjct: 134 MYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSM-----IK 188

Query: 638 PSMEH----FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
             +E      G +V++ ++C  L +A RV   +  DP+      L S  VK+   E A  
Sbjct: 189 MGLERNSYCGGALVDMYAKCDRLGDAQRVFDGI-VDPNTVCWTCLFSGYVKAGLPEEAVI 247

Query: 694 ISEHLLQLEPDNPGN--YVALSNAYAASGR 721
           + E  ++ E   P +  +V + N Y + G+
Sbjct: 248 VFER-MRGEGHRPDHLAFVTVINTYISLGK 276


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 229/712 (32%), Positives = 361/712 (50%), Gaps = 85/712 (11%)

Query: 96  YTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
           + G  IH  ++K G     +  V +  + FY +C +L  A++LF  +  ++  +W  I+ 
Sbjct: 4   FLGLTIHGGLIKRG-LDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVM 62

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
           +N R G  EKA+  F EMQ  G    +  +  +L+ C        GR +HGYVL++G + 
Sbjct: 63  VNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLES 122

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARN---------------------------- 247
            V + +SLI MY + G LE +RKVF+ M  RN                            
Sbjct: 123 NVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEME 182

Query: 248 -------VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
                  +V WNS++ GY   GL+++AI V   M + G++P+  S++S+L A A    L 
Sbjct: 183 ICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLK 242

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            GK  H   + N +  D  + +++I+ Y K G L  A +VF  M  ++IV WN L+    
Sbjct: 243 LGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLV---- 298

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
               S +  A  + D  A   R++         I  D + WN+L + YA LG+  +A  +
Sbjct: 299 ----SGLSYACLLKDAEALMIRMEKEG------IKPDAITWNSLASGYATLGKPEKALDV 348

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
             +M+ +G++PN++SW ++  G  +NG    A  +F++MQ  GV PN  T +TL+  L  
Sbjct: 349 IGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKIL-- 406

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
                                           C  +  L +G+ +HG+ +R +L     +
Sbjct: 407 -------------------------------GCLSL--LHSGKEVHGFCLRKNLICDAYV 433

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
            T+LVDMY K G++  A  +F    +K L  +N M+ GYAM G   E +A F  + + G+
Sbjct: 434 ATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGM 493

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
           +PD+ITFT++L+ C ++GLV EG + F  M S + + P++EH  C+V+LL R G LDEA 
Sbjct: 494 EPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAW 553

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
             I TM   PDA I G+ LS+C    + ELAE   + L  LEP N  NY+ + N Y+   
Sbjct: 554 DFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLN 613

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           RW +V ++R++M+   +R     SWIQI + +H+F A  ++HP   +IY  L
Sbjct: 614 RWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFEL 665



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 145/514 (28%), Positives = 236/514 (45%), Gaps = 72/514 (14%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           +AV+L  EM+    +       +LLQ C  K     G+QIH  +L+ G     N  +   
Sbjct: 72  KAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLG--LESNVSMCNS 129

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAII----------------------GLNCR 159
           L+V Y++   L+++ ++F  ++ +N+ SW +I+                      GL   
Sbjct: 130 LIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPD 189

Query: 160 V-------------GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHG 206
           +             GLS+ A+     MQ  G+ P    + ++L+A    G +  G+A+HG
Sbjct: 190 IVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHG 249

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE 266
           Y+L+      V+V ++LIDMY K G L  AR VFD M A+N+VAWNS++ G     L ++
Sbjct: 250 YILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKD 309

Query: 267 AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL-----G 321
           A  +   M  EG++P  ++  S+ S  A L     GK   A+ VI  M+   V       
Sbjct: 310 AEALMIRMEKEGIKPDAITWNSLASGYATL-----GKPEKALDVIGKMKEKGVAPNVVSW 364

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDI----VTWNLLIA-----SYVQSGQS------- 365
           ++I +  SK G   +A  VF +M E  +     T + L+      S + SG+        
Sbjct: 365 TAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLR 424

Query: 366 -----DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
                D  VA+++VDMY K   + +A ++F  I  + +  WN +L  YA  GR  E    
Sbjct: 425 KNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIAA 484

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLT 479
           F  M   G+ P+ I++ SV+     +G + E    F  M+S  G+ P +   + ++  L 
Sbjct: 485 FSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLG 544

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           ++   +EA  F Q M    +KP  T     LS+C
Sbjct: 545 RSGYLDEAWDFIQTM---SLKPDATIWGAFLSSC 575



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 136/312 (43%), Gaps = 72/312 (23%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           ++A+ +L  M+    +        LLQ       +  G+ IH  IL+N  ++  + YVET
Sbjct: 207 KDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWY--DVYVET 264

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII-GLN---------------------- 157
            L+  Y K   L  A  +F  +  KN+ +W +++ GL+                      
Sbjct: 265 TLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKP 324

Query: 158 ------------CRVGLSEKALIGFVEMQEDGVSPD---------------NF------- 183
                         +G  EKAL    +M+E GV+P+               NF       
Sbjct: 325 DAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVF 384

Query: 184 -------VLPN------VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
                  V PN      +LK  G L  +  G+ VHG+ L+       +VA++L+DMYGK 
Sbjct: 385 IKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKS 444

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           GDL+ A ++F G+  +++ +WN M++GY   G  EE I  F  M   G+EP  ++ TS+L
Sbjct: 445 GDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVL 504

Query: 291 SASANLDALDEG 302
           S   N   + EG
Sbjct: 505 SVCKNSGLVQEG 516


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/720 (30%), Positives = 370/720 (51%), Gaps = 83/720 (11%)

Query: 137 RLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
           ++F  +R +  F+W A+IG     G    AL  +  M+ +GV  D +  P +LKACG L 
Sbjct: 117 KVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKLR 176

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI 255
            +  G  +H  ++K+GF+   F+ ++L+ MY K   L  A+++FD    + + V WNS++
Sbjct: 177 DIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSIL 236

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
             Y  +G + E +++F EM + G      ++ S L+A         GK+ HA  + +   
Sbjct: 237 SSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTHS 296

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ-------------- 361
            +  + +++I  Y++ G + +A  +   M   D+VTWN LI  YVQ              
Sbjct: 297 FEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCDM 356

Query: 362 ------------------SGQ--------------------SDVVVASSIVDMYAKCERI 383
                             SG+                    S+++V ++++DMY+KC   
Sbjct: 357 IAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLT 416

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG- 442
               + F  +  +D++ W T++A YA      EA +LF  +  + +  + +   S++   
Sbjct: 417 CYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRAC 476

Query: 443 ---------------FLRNGQM-----NEAKDMFLQMQSLGVQ---------PNLITWTT 473
                           LR G +     NE  D++ + +++G            ++++WT+
Sbjct: 477 SVLKSMLIVKEIHCHILRKGLIDTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTS 536

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +IS    N   NEA+  F+ M ETG+   +  + C LSA   +++L+ GR IHGYL+R  
Sbjct: 537 MISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREIHGYLLRKG 596

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
            CL   I  ++VDMYA CG++  AK VFD    K L  Y +MI+ Y MHG    ++ LF 
Sbjct: 597 FCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASVELFN 656

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            ++ + + PD I+F  +L ACSHAGL++EG      M  +++++P  EH+ C+V++L R 
Sbjct: 657 KMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKIMELEYKLEPWPEHYVCLVDMLGRA 716

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
             + EA   +  M  +P   +  +LL+ C   +E E+ E  ++ LL+LEP NPGN V +S
Sbjct: 717 NCVVEAFEFVKMMKTEPTTEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVS 776

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           N +A  GRWN+V +VR  MK  G+ K+PGCSWI++  ++H F A D+SHP+T+EIY  L+
Sbjct: 777 NVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPETKEIYEKLS 836



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 141/526 (26%), Positives = 237/526 (45%), Gaps = 93/526 (17%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+ C   RD+ +G ++H  ++K G  F    ++   LV  YAK D L  A RLF   + 
Sbjct: 168 LLKACGKLRDIRSGTELHCMLVKLG--FNSTGFIVNALVSMYAKTDHLSAAKRLFDASQE 225

Query: 145 K-NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
           K +   W +I+      G S + L  F EMQ  G + +++ + + L AC    +   G+ 
Sbjct: 226 KGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKE 285

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +H  VLK      V+V ++LI MY +CG + EA ++   M   +VV WNS+I GYVQN +
Sbjct: 286 IHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLM 345

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
            +EA++ F +M   G +P  VS+TS+++AS  L  L  G + HA  + +G + + ++G++
Sbjct: 346 YKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNT 405

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY------------------------ 359
           +I+ YSK  L       F  M E+D+++W  +IA Y                        
Sbjct: 406 LIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEID 465

Query: 360 ---------------------------VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
                                      ++ G  D V+ + +VD+Y KC  +  A +VF S
Sbjct: 466 EMMLGSILRACSVLKSMLIVKEIHCHILRKGLIDTVIQNELVDVYGKCRNMGYASRVFES 525

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV------------- 439
           I  +DVV W +++++ A  G   EA  LF +M   G+  + ++   +             
Sbjct: 526 IKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKG 585

Query: 440 --ILGFLRN--------------------GQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
             I G+L                      G +  AK +F +++  G    L+ +T++I+ 
Sbjct: 586 REIHGYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKG----LLQYTSMINA 641

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
              + CG  ++  F +M    + P   +    L AC+    L  GR
Sbjct: 642 YGMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGR 687



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 132/517 (25%), Positives = 226/517 (43%), Gaps = 114/517 (22%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L+++ GK   L +  KVFD M  R   AWN++I  YV NG    A+ ++  M +EGV   
Sbjct: 103 LLELCGKSRALSQ-EKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLD 161

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
             S   +L A   L  +  G + H + V                   K+G          
Sbjct: 162 LYSFPVLLKACGKLRDIRSGTELHCMLV-------------------KLGF--------- 193

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-DVVLW 401
                                 S   + +++V MYAK + +  AK++F++   + D VLW
Sbjct: 194 ---------------------NSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLW 232

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPN---IIS----------------------- 435
           N++L++Y+  G+S E  +LF +MQ+ G + N   I+S                       
Sbjct: 233 NSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLK 292

Query: 436 ---------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                     N++I  + R G+M EA  +   M +     +++TW +LI G  QN    E
Sbjct: 293 STHSFEVYVCNALIAMYARCGKMLEAGRILRLMNN----ADVVTWNSLIKGYVQNLMYKE 348

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           A+ FF +M+  G KP   ++T  ++A   +++L  G  +H Y+I+H       +  +L+D
Sbjct: 349 ALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLID 408

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MY+KC       R F +   K+L  +  +I+GYA++   VEAL LF+++ +K ++ D + 
Sbjct: 409 MYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMM 468

Query: 607 FTNILNACS-----------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
             +IL ACS           H  ++ +GL        D  ++  +      V++  +C N
Sbjct: 469 LGSILRACSVLKSMLIVKEIHCHILRKGL-------IDTVIQNEL------VDVYGKCRN 515

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
           +  A RV  ++           + S+ +  NE E  E
Sbjct: 516 MGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVE 552



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 182/365 (49%), Gaps = 25/365 (6%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA+ L  ++  +  +I   + G +L+ C   + M   ++IH  IL+ G     +  ++ +
Sbjct: 449 EALQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGLI---DTVIQNE 505

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           LV  Y KC  +  ASR+F  ++ K+V SW ++I  +   G   +A+  F  M E G+  D
Sbjct: 506 LVDVYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLAD 565

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGF--DGCVFVASSLIDMYGKCGDLEEARKV 239
           +  L  +L A  +L  +  GR +HGY+L+ GF  +G + VA  ++DMY  CGDL+ A+ V
Sbjct: 566 SVALLCILSAAASLSALKKGREIHGYLLRKGFCLEGSIAVA--VVDMYACCGDLQSAKAV 623

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD +  + ++ + SMI  Y  +G  + ++ +F +M  E V P  +S  ++L A ++   L
Sbjct: 624 FDRIERKGLLQYTSMINAYGMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAGLL 683

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV-----FSRMVERDIVT--W 352
           DEG++      +  MEL+  L     ++   V +L  A  V     F +M++ +  T  W
Sbjct: 684 DEGRR-----FLKIMELEYKLEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTTEVW 738

Query: 353 NLLIASYVQSGQSDV--VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
             L+A+     + ++  + A  ++++  K    +    V  S +  +   WN +    A 
Sbjct: 739 CALLAACRSHSEKEIGEIAAQRLLELEPK----NPGNLVLVSNVFAEQGRWNDVEKVRAK 794

Query: 411 LGRSG 415
           +  SG
Sbjct: 795 MKASG 799


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 229/724 (31%), Positives = 380/724 (52%), Gaps = 78/724 (10%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL---DVASRLFCR 141
           LLQ C   R     +Q+ ++ +  G     + Y  ++L+ F +    L     + R+F  
Sbjct: 9   LLQSCKCPRHF---KQLLSQTILTG--LITDPYAASRLINFSSHSTTLVPFHYSLRIFNH 63

Query: 142 LRVKNVFSWAAIIGLNCRVGLS-EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
           LR  N F+W  I+  +  +  S  +AL+ +         PD++  P +L+ C A      
Sbjct: 64  LRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFE 123

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           GR +H + +  GFDG V+V ++L+++Y  CG +  AR+VF+     ++V+WN+++ GYVQ
Sbjct: 124 GRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQ 183

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            G  EEA RVF  M      P R ++ S                                
Sbjct: 184 AGEVEEAERVFEGM------PERNTIAS-------------------------------- 205

Query: 321 GSSIINFYSKVGLLEDAEVVFS--RMVERDIVTWNLLIASYVQS--------------GQ 364
            +S+I  + + G +E A  +F+  R  ERD+V+W+ +++ Y Q+              G 
Sbjct: 206 -NSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGS 264

Query: 365 SDVVVASSIVDMYAKCERIDNAKQ------VFNSIILRDVV-LWNTLLAAYADLGRSGEA 417
              V    +V   + C R+ N +       +   + + D V L N L+  Y+  G   +A
Sbjct: 265 GVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDA 324

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            R+F      G   ++ISWNS+I G+LR G + +A+ +F  M     + ++++W+ +ISG
Sbjct: 325 RRIFDD---GGELLDLISWNSMISGYLRCGSIQDAEMLFYSMP----EKDVVSWSAMISG 377

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
             Q+ C +EA+  FQEM   G++P  T +  A+SACT +A+L  G+ IH Y+ R+ L + 
Sbjct: 378 YAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVN 437

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             + T+L+DMY KCG +  A  VF     K +  +NA+I G AM+G   ++L +F ++++
Sbjct: 438 VILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKK 497

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
            G  P+ ITF  +L AC H GLVN+G   F  M  +H+++ +++H+GC+V+LL R G L 
Sbjct: 498 TGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLK 557

Query: 658 EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
           EA  +I +MP  PD    G+LL  C K  + E+ E +   L+QL+PD+ G +V LSN YA
Sbjct: 558 EAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYA 617

Query: 718 ASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGM 777
           + G W  V ++R IM + G+ K PGCS I+    +H F+A D++HP+  +I   L ++  
Sbjct: 618 SKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAA 677

Query: 778 HVRL 781
            +++
Sbjct: 678 KLKI 681



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 143/571 (25%), Positives = 252/571 (44%), Gaps = 105/571 (18%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  LLQ C  +   + G+Q+HA  + +G  F  + YV   L+  YA C ++  A R+F  
Sbjct: 108 YPILLQCCAARVSEFEGRQLHAHAVSSG--FDGDVYVRNTLMNLYAVCGSVGSARRVFEE 165

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
             V ++ SW  ++    + G  E+A     E   +G+   N +  N              
Sbjct: 166 SPVLDLVSWNTLLAGYVQAGEVEEA-----ERVFEGMPERNTIASN-------------- 206

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA--RNVVAWNSMIVGYV 259
                               S+I ++G+ G +E+AR++F+G+    R++V+W++M+  Y 
Sbjct: 207 --------------------SMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYE 246

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           QN + EEA+ +F EM   GV    V V S LSA + +  ++ G+  H +AV  G+E    
Sbjct: 247 QNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVS 306

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVE-RDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
           L +++I+ YS  G + DA  +F    E  D+++WN +I+ Y+                  
Sbjct: 307 LKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYL------------------ 348

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP------- 431
           +C  I +A+ +F S+  +DVV W+ +++ YA      EA  LF +MQL G+ P       
Sbjct: 349 RCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVS 408

Query: 432 ----------------------------NIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
                                       N+I   ++I  +++ G +  A ++F  M+  G
Sbjct: 409 AISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKG 468

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
           V     TW  +I GL  N    +++  F +M +TG  P+  T    L AC  +  + +GR
Sbjct: 469 VS----TWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGR 524

Query: 524 AIHGYLIR-HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAM 581
                +I  H +         +VD+  + G + +A+ + D  P + ++  + A++     
Sbjct: 525 HYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRK 584

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           H        L + L Q  + PD   F  +L+
Sbjct: 585 HRDNEMGERLGRKLIQ--LQPDHDGFHVLLS 613



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 160/350 (45%), Gaps = 42/350 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +S   + +   EA+ L  EMK     +   +    L  C    ++  G+ +H   
Sbjct: 237 SWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLA 296

Query: 106 LKNG--DFFARN-----------EYVETK-----------------LVVFYAKCDALDVA 135
           +K G  D+ +             E V+ +                 ++  Y +C ++  A
Sbjct: 297 VKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDA 356

Query: 136 SRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
             LF  +  K+V SW+A+I    +     +AL  F EMQ  GV PD   L + + AC  L
Sbjct: 357 EMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHL 416

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
             +  G+ +H Y+ +      V ++++LIDMY KCG +E A +VF  M  + V  WN++I
Sbjct: 417 ATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVI 476

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
           +G   NG  E+++ +F +M   G  P  ++   +L A  ++  +++G+        N M 
Sbjct: 477 LGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRH-----YFNSMI 531

Query: 316 LDNVLGSSI------INFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
            ++ + ++I      ++   + GLL++AE +   M +  D+ TW  L+ +
Sbjct: 532 HEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGA 581



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 16/233 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++ +   EA+ L  EM+    +         +  C +   +  G+ IHA I
Sbjct: 370 SWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYI 429

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            +N      N  + T L+  Y KC  ++ A  +F  +  K V +W A+I      G  E+
Sbjct: 430 SRNK--LQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQ 487

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR-----AVHGYVLKVGFD--GCVF 218
           +L  F +M++ G  P+      VL AC  +G V  GR      +H + ++      GC  
Sbjct: 488 SLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGC-- 545

Query: 219 VASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRV 270
               ++D+ G+ G L+EA ++ D M +A +V  W +++    ++  NE   R+
Sbjct: 546 ----MVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERL 594


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/774 (30%), Positives = 391/774 (50%), Gaps = 90/774 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR--L 142
           LLQ C     +   +Q+HA  L +G F  R+  +   L++ YA       +  LF     
Sbjct: 40  LLQLCTLCDTLSQTKQVHAYSLLHG-FLPRSVSLCASLILQYASFGHPSNSLLLFQHSVA 98

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
             ++ F W  +I  N   G+ +     +  M   GV PD    P VLK C     V  GR
Sbjct: 99  YSRSAFLWNTLIRANSIAGVFD-GFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGR 157

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            VHG   K+GFDG VFV ++L+  YG CG   +A KVFD M  R+ V+WN++I     +G
Sbjct: 158 EVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHG 217

Query: 263 LNEEAIRVFYEMTLE--GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV- 319
             EEA+  F  M     G++P  V+V S+L   A  +     +  H  A+  G+   +V 
Sbjct: 218 FYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVK 277

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------- 363
           +G+++++ Y K G  + ++ VF  + ER++++WN +I S+   G                
Sbjct: 278 VGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEG 337

Query: 364 ------------------------------------QSDVVVASSIVDMYAKCERIDNAK 387
                                               +SDV +++S++DMYAK      A 
Sbjct: 338 MRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIAS 397

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LG 442
            +FN + +R++V WN ++A +A      EA  L  QMQ +G +PN +++ +V+     LG
Sbjct: 398 TIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLG 457

Query: 443 FLRNGQMNEAK-----------------DMFLQMQSLGVQPNL--------ITWTTLISG 477
           FL  G+   A+                 DM+ +   L +  N+        +++  LI G
Sbjct: 458 FLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISVRDEVSYNILIIG 517

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
            ++ +   E++  F EM   G++P   +    +SAC ++A +R G+ IHG L+R      
Sbjct: 518 YSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTH 577

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             +  SL+D+Y +CG I  A +VF    +K++  +N MI GY M G    A+ LF+ +++
Sbjct: 578 LFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKE 637

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
            G++ DS++F  +L+ACSH GL+ +G + F  M  D  ++P+  H+ C+V+LL R G ++
Sbjct: 638 DGVEYDSVSFVAVLSACSHGGLIEKGRKYF-KMMCDLNIEPTHTHYACMVDLLGRAGLME 696

Query: 658 EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
           EA  +I  +   PD +I G+LL  C      EL  + +EHL +L+P + G Y+ LSN YA
Sbjct: 697 EAADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYYILLSNMYA 756

Query: 718 ASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
            + RW+E ++VR++MK +G +KNPGCSW+Q+G+ +H F+  ++     ++ + +
Sbjct: 757 EAERWDEANKVRELMKSRGAKKNPGCSWVQVGDLVHAFLVGEKIDSLDDDFWVS 810



 Score =  187 bits (474), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 145/568 (25%), Positives = 252/568 (44%), Gaps = 94/568 (16%)

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           PN+L+ C     +   + VH Y L  GF    V + +SLI  Y   G    +  +F   +
Sbjct: 38  PNLLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSV 97

Query: 245 A--RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           A  R+   WN++I      G+  +    +  M   GV+P   +   +L   ++   + +G
Sbjct: 98  AYSRSAFLWNTLIRANSIAGV-FDGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKG 156

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           ++ H VA   G + D  +G++++ FY   GL  DA  VF  M ERD V+WN +I      
Sbjct: 157 REVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLH 216

Query: 363 G-------------------QSDVVVASSI------------------------------ 373
           G                   Q D+V   S+                              
Sbjct: 217 GFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHV 276

Query: 374 ------VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
                 VD+Y KC     +K+VF+ I  R+V+ WN ++ +++  G+  +A  +F  M  E
Sbjct: 277 KVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDE 336

Query: 428 GISPNIISWNSVI-----LGFLRNG--------QMNEAKDMFLQ---------------- 458
           G+ PN ++ +S++     LG  + G        +M    D+F+                 
Sbjct: 337 GMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIA 396

Query: 459 ---MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
                 +GV+ N+++W  +I+   +N    EA+   ++M   G  P+  T T  L AC  
Sbjct: 397 STIFNKMGVR-NIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACAR 455

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +  L  G+ IH  +IR    L   +  +L DMY+KCG ++ A+ VF+IS   E+  YN +
Sbjct: 456 LGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISVRDEVS-YNIL 514

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I GY+    ++E+L LF  ++  G+ PD ++F  +++AC++   + +G E+  G+     
Sbjct: 515 IIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIH-GLLVRKL 573

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVI 663
               +     +++L +RCG +D A +V 
Sbjct: 574 FHTHLFVANSLLDLYTRCGRIDLATKVF 601



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 187/361 (51%), Gaps = 20/361 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I++ ++ +   EAV+L+ +M+ +        +  +L  C     +  G++IHARI
Sbjct: 410 SWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARI 469

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++ G   + + +V   L   Y+KC  L++A  +F  + V++  S+  +I    R   S +
Sbjct: 470 IRVGS--SLDLFVSNALTDMYSKCGCLNLAQNVF-NISVRDEVSYNILIIGYSRTNDSLE 526

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           +L  F EM+  G+ PD      V+ AC  L ++  G+ +HG +++  F   +FVA+SL+D
Sbjct: 527 SLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLD 586

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y +CG ++ A KVF  +  ++V +WN+MI+GY   G  + AI +F  M  +GVE   VS
Sbjct: 587 LYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVS 646

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED-AEVVFSRM 344
             ++LSA ++   +++G++   +     +E  +   + +++   + GL+E+ A+++    
Sbjct: 647 FVAVLSACSHGGLIEKGRKYFKMMCDLNIEPTHTHYACMVDLLGRAGLMEEAADLIRGLS 706

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASS----------------IVDMYAKCERIDNAKQ 388
           +  D   W  L+ +    G  ++ + ++                + +MYA+ ER D A +
Sbjct: 707 IIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYYILLSNMYAEAERWDEANK 766

Query: 389 V 389
           V
Sbjct: 767 V 767


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 240/798 (30%), Positives = 416/798 (52%), Gaps = 98/798 (12%)

Query: 78  GPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASR 137
           G   +  LLQ       ++    +H +I+  G     + Y+   L+  Y++   +  A +
Sbjct: 43  GRREFARLLQLRASDDLLHYQNVVHGQIIVWG--LELDTYLSNILINLYSRAGGMVYARK 100

Query: 138 LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALG 196
           +F ++  +N+ SW+ ++      G+ E++L+ F+E  +    SP+ ++L + ++AC  L 
Sbjct: 101 VFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLD 160

Query: 197 WVGFGR----AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
             G GR     +  +++K GFD  V+V + LID Y K G+++ AR VFD +  ++ V W 
Sbjct: 161 --GRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWT 218

Query: 253 SMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN 312
           +MI G V+ G +  ++++FY++  + V P    ++++LSA + L  L+ GKQ HA  +  
Sbjct: 219 TMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRY 278

Query: 313 GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------- 363
           G+E+D  L + +I+ Y K G +  A  +F+ M  ++I++W  L++ Y Q+          
Sbjct: 279 GLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELF 338

Query: 364 -------------------------------------------QSDVVVASSIVDMYAKC 380
                                                       +D  V +S++DMYAKC
Sbjct: 339 TSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKC 398

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS---GEASRLFYQMQLEGISPNIISWN 437
           + + +A++VF+     DVVL+N ++  Y+ LG      EA  +F  M+   I P+++++ 
Sbjct: 399 DCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFV 458

Query: 438 SVI--------LGFLR--NGQMNE----------------------AKDMFLQMQSLGVQ 465
           S++        LG  +  +G M +                       KD  L    + V+
Sbjct: 459 SLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVK 518

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            +L+ W ++ +G  Q S   EA+  F E+  +  +P   T    ++A  ++AS++ G+  
Sbjct: 519 -DLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEF 577

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           H  L++  L     I  +L+DMYAKCG+   A + FD + S+++  +N++IS YA HG  
Sbjct: 578 HCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEG 637

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            +AL + + +  +GI+P+ ITF  +L+ACSHAGLV +GL+ F  M     ++P  EH+ C
Sbjct: 638 KKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVC 696

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           +V+LL R G L++A  +I  MP  P A +  SLLS C K+   ELAE+ +E  +  +P +
Sbjct: 697 MVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKD 756

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
            G++  LSN YA+ G W E  +VR+ MK +G+ K PG SWI I +E+H+F++ D+SH K 
Sbjct: 757 SGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKA 816

Query: 766 EEIYATLALLGMHVRLVS 783
            +IY  L  L + +R VS
Sbjct: 817 NQIYEVLDDLLVQIRGVS 834


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/752 (31%), Positives = 378/752 (50%), Gaps = 104/752 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL-- 142
           L+  C    ++  G++IH++I      F  N  +   L+  Y+KC +L  A + F RL  
Sbjct: 13  LVNACSCLGNLAAGRRIHSQISDRD--FEENSVLGNALISMYSKCGSLIDAKQAFDRLPR 70

Query: 143 -RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV-LPNVLKACGALGWVGF 200
              ++V +W A+I    R G + +AL  F +M  DG  P N V   +VL +C   G +  
Sbjct: 71  ASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSL 130

Query: 201 G--RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF----DGMIARNVVAWNSM 254
              RA+HG ++  G +   FV ++L+D YGK G L++A +VF    D   + ++V  ++M
Sbjct: 131 EDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAM 190

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           I    QNG  +E++R+FY M LEG +P+ V++ S+L+A + L        A A  +   M
Sbjct: 191 ISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPV----GSATAFVLEQAM 246

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIV 374
           E                                            V S   D V+ ++++
Sbjct: 247 E--------------------------------------------VVSATRDNVLGTTLL 262

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
             YA+   +  A+  F++I   DVV WN + AAY    R  EA  LF +M LEG+ P++ 
Sbjct: 263 TTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVA 322

Query: 435 SW--------------------------------------NSVILGFLRNGQMNEAKDMF 456
           ++                                      N+ +  + + G + +A+ +F
Sbjct: 323 TFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVF 382

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTD 515
            ++     + + ITW ++++    +  G EA   FQ M  E  +KP+  T    L A T 
Sbjct: 383 ERISP--TRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTS 440

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV--YN 573
             S+  GR IH  ++ +     T I  +L++MYAKCG++  A+ +FD S S +  V  + 
Sbjct: 441 RTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWT 500

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           ++++GYA +G A  AL LF  +QQ+G+ P+ ITF + L AC+H G + +G EL  GM  D
Sbjct: 501 SLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLSGMTPD 560

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           H + P+ +HF C+V+LL RCG LDEA + +L      D     +LL  C  S E E  E 
Sbjct: 561 HGIVPASKHFSCIVDLLGRCGRLDEAEK-LLERTSQADVITWMALLDACKNSKELERGER 619

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            +E ++QL+P+   +Y+ L++ YAA+GRWNE + +R  M +KG+R +PGCS +++ +ELH
Sbjct: 620 CAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELH 679

Query: 754 VFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
            F A D+SHPK+EEIY  L  L   ++    V
Sbjct: 680 SFSAGDKSHPKSEEIYLELERLHWSIKAAGYV 711


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/737 (29%), Positives = 388/737 (52%), Gaps = 23/737 (3%)

Query: 45  KSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHAR 104
           KSY   I+ LS      + +   + M   +       +  L++ C        G   H R
Sbjct: 14  KSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQR 73

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           ++ +G  ++ + Y+ T L+ FY+K      A ++F  +  +NV  W  +IG   R G  +
Sbjct: 74  VIVDG--YSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHD 131

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
            A   +  M+  G+ P +  +  +L   G L  V   + +H  V++ GF   V +A+S++
Sbjct: 132 VAFSMYNIMRRQGIQPSSVTMLGLLS--GVLELVHL-QCLHACVIQYGFGSDVALANSML 188

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
           ++Y KCG +E+A+ +F+ M AR+V++WNS++ GY Q G   E +++   M  +G+EP + 
Sbjct: 189 NVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQ 248

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +  S++SA+A    L  GK  H   +  G+E D+ + +S+I  Y K G +  A  +F  M
Sbjct: 249 TFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
           + +D+++W  +I+  VQ+  +D+ V                 +++  S ++       ++
Sbjct: 309 MHKDVISWTAMISGLVQNDCADMAVTV--------------FRRMLKSRVMPSTATIASV 354

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           LAA A+LG     + +   +  + I  +I S NS++  + + G + ++  +F +M     
Sbjct: 355 LAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS---- 410

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
           + ++++W  ++SG  QN    +A+L F EM +   +P + T+   L AC  + +L  G+ 
Sbjct: 411 RRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKW 470

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           IH ++ +  L     I T+LVDMY+KCG++  A++ FD  P ++L  ++++I+GY  HG 
Sbjct: 471 IHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGK 530

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG 644
              AL ++ +    GI P+ + + +IL+ACSH GLV++GL  F  M  D  ++P +EH  
Sbjct: 531 GETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRA 590

Query: 645 CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
           C+V+LLSR G ++EA      M   P   ++G LL  C  +   EL + ++  ++ L+P 
Sbjct: 591 CIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPA 650

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPK 764
           N GNYV L+++YA+  RW+ V +V   MK   L+K PG S+I++   +  F     SHP+
Sbjct: 651 NAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQ 710

Query: 765 TEEIYATLALLGMHVRL 781
            EEI   + LL    R 
Sbjct: 711 FEEIIDRVLLLNKRRRF 727



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 39/289 (13%)

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           M+ AK  FL        P   ++  +I+ L+      + +L +  ML T   P   T   
Sbjct: 1   MSRAKPSFLN-------PATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPS 53

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            + ACT +    +G + H  +I       + I TSL++ Y+K G+   A++VFD    + 
Sbjct: 54  LVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRN 113

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA--------CSHA--- 617
           +  +  MI  Y   G    A +++  ++++GI P S+T   +L+         C HA   
Sbjct: 114 VVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVI 173

Query: 618 --------GLVNEGLELF--VGMFSDHQV------KPSMEHFGCVVNLLSRCGNLDEALR 661
                    L N  L ++   G   D Q          +  +  +V+  ++ GN+ E L+
Sbjct: 174 QYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQ 233

Query: 662 VILTMPCD---PDAHIIGSLLSTCVKSNETELAEYISEHLLQ--LEPDN 705
           +++ M  D   PD    GSL+S     ++  + + +  H+L+  LE D+
Sbjct: 234 LLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDS 282


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/744 (30%), Positives = 366/744 (49%), Gaps = 102/744 (13%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  LL+ C+  RD   G+ +HAR+++       +  +   L+  Y+K      A  +F  
Sbjct: 65  FSSLLKSCIRARDFRLGKLVHARLIEFD--IEPDSVLYNSLISLYSKSGDSAKAEDVFET 122

Query: 142 LR---VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
           +R    ++V SW+A++      G    A+  FVE  E G+ P+++    V++AC    +V
Sbjct: 123 MRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFV 182

Query: 199 GFGRAVHGYVLKVG-FDGCVFVASSLIDMYGKC-GDLEEARKVFDGMIARNVVAWNSMIV 256
           G GR   G+++K G F+  V V  SLIDM+ K     E A KVFD M   NVV W  MI 
Sbjct: 183 GVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMIT 242

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
             +Q G   EAIR F +M L G E  + +++S+ SA A L+ L                 
Sbjct: 243 RCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLS---------------- 286

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
              LG  + ++  + GL++D E                                 S+VDM
Sbjct: 287 ---LGKQLHSWAIRSGLVDDVEC--------------------------------SLVDM 311

Query: 377 YAKCE---RIDNAKQVFNSIILRDVVLWNTLLAAY-ADLGRSGEASRLFYQMQLEG-ISP 431
           YAKC     +D+ ++VF+ +    V+ W  L+  Y  +   + EA  LF +M  +G + P
Sbjct: 312 YAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEP 371

Query: 432 NIISW-----------------------------------NSVILGFLRNGQMNEAKDMF 456
           N  ++                                   NSVI  F+++ +M +A+  F
Sbjct: 372 NHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF 431

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
             +     + NL+++ T + G  +N    +A     E+ E  +  S  T    LS   +V
Sbjct: 432 ESLS----EKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANV 487

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
            S+R G  IH  +++  L    P+  +L+ MY+KCG+I  A RVF+   ++ +  + +MI
Sbjct: 488 GSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMI 547

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +G+A HG A+  L  F  + ++G+ P+ +T+  IL+ACSH GLV+EG   F  M+ DH++
Sbjct: 548 TGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKI 607

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
           KP MEH+ C+V+LL R G L +A   I TMP   D  +  + L  C   + TEL +  + 
Sbjct: 608 KPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAAR 667

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
            +L+L+P+ P  Y+ LSN YA +G+W E +++R  MKE+ L K  GCSWI++G+++H F 
Sbjct: 668 KILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFY 727

Query: 757 ACDRSHPKTEEIYATLALLGMHVR 780
             D +HP   +IY  L  L   ++
Sbjct: 728 VGDTAHPNAHQIYDELDRLITEIK 751



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 232/484 (47%), Gaps = 48/484 (9%)

Query: 35  ESDNSYESLYKSYFHQISSL---------SKEKQI---REAVDLLTEMKCRNFQIGPEIY 82
           + +NS+E+ YK  F ++S L         ++  Q+   REA+    +M    F+      
Sbjct: 214 KGENSFENAYK-VFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTL 272

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA---LDVASRLF 139
             +   C    ++  G+Q+H+  +++G      + VE  LV  YAKC A   +D   ++F
Sbjct: 273 SSVFSACAELENLSLGKQLHSWAIRSGLV----DDVECSLVDMYAKCSADGSVDDCRKVF 328

Query: 140 CRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGW 197
            R+   +V SW A+I G      L+ +A+  F EM   G V P++F   +  KACG L  
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
              G+ V G   K G      VA+S+I M+ K   +E+A++ F+ +  +N+V++N+ + G
Sbjct: 389 PRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDG 448

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
             +N   E+A ++  E+T   +  +  +  S+LS  AN+ ++ +G+Q H+  V  G+  +
Sbjct: 449 TCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCN 508

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
             + +++I+ YSK G ++ A  VF+ M  R++++W  +I  + + G +  V+        
Sbjct: 509 QPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVL-------- 560

Query: 378 AKCERIDNAKQVFNSIILRDV----VLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPN 432
                     + FN +I   V    V +  +L+A + +G   E  R F  M +   I P 
Sbjct: 561 ----------ETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPK 610

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
           +  +  ++    R G + +A   F  + ++  Q +++ W T +     +S      L  +
Sbjct: 611 MEHYACMVDLLCRAGLLTDA---FEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAAR 667

Query: 493 EMLE 496
           ++LE
Sbjct: 668 KILE 671



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 111/234 (47%), Gaps = 16/234 (6%)

Query: 32  KLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQ 87
           ++ ++  ++ESL +    SY   +    +     +A  LL+E+  R   +    +  LL 
Sbjct: 423 RMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLS 482

Query: 88  GCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV 147
           G      +  G+QIH++++K G   + N+ V   L+  Y+KC ++D ASR+F  +  +NV
Sbjct: 483 GVANVGSIRKGEQIHSQVVKLG--LSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNV 540

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL-----GWVGFGR 202
            SW ++I    + G + + L  F +M E+GV P+      +L AC  +     GW  F  
Sbjct: 541 ISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNS 600

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
               + +K   +      + ++D+  + G L +A +  + M    +V+ W + +
Sbjct: 601 MYEDHKIKPKMEH----YACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 494 MLETGIKP-STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           M   GI+P  + T +  L +C      R G+ +H  LI  D+   + +  SL+ +Y+K G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 553 NIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           +  +A+ VF+       +++  ++AM++ Y  +G  ++A+ +F    + G+ P+   +T 
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171

Query: 610 ILNACSHAGLVNEG 623
           ++ ACS++  V  G
Sbjct: 172 VIRACSNSDFVGVG 185


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/794 (29%), Positives = 386/794 (48%), Gaps = 109/794 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LLQ     RD  +   +  R+        R+     K++  YAK + +  AS  F  + V
Sbjct: 47  LLQVYTNSRDFVSASMVFDRMP------LRDVVSWNKMINGYAKSNNMVKASFFFNMMPV 100

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++V SW +++    + G + K++  FV+M   G   D      +LK C  L     G  +
Sbjct: 101 RDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQI 160

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HG V++VG D  V  AS+L+DMY K     E+ +VF G+  +N V+W+++I G VQN L 
Sbjct: 161 HGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLL 220

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
             A++ F EM       ++    S+L + A L  L  G Q HA A+ +    D ++ ++ 
Sbjct: 221 SLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTAT 280

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS------------------- 365
           ++ Y+K   ++DA+++F +    +  ++N +I  Y Q                       
Sbjct: 281 LDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDE 340

Query: 366 -----------------------DVVVASSI----------VDMYAKCERIDNAKQVFNS 392
                                  D+ + SS+          +DMY KC+ +  A +VF+ 
Sbjct: 341 ISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDE 400

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-------LG--- 442
           +  RD V WN ++AA+   G+  E   LF  M    I P+  ++ SV+       LG   
Sbjct: 401 MRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTGGSLGYGM 460

Query: 443 ------------------------FLRNGQMNEAKDM---FLQ-------------MQSL 462
                                   + + G + EA+ +   F Q             M + 
Sbjct: 461 EIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNK 520

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
            +Q   ++W ++ISG        +A + F  M+E GI P   T    L  C ++AS   G
Sbjct: 521 RLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG 580

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           + IH  +I+ +L     I ++LVDMY+KCG++H ++ +F+ S  ++   +NAMI GYA H
Sbjct: 581 KQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHH 640

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G   EA+ LF+ +  + I P+ +TF +IL AC+H GL+++GLE F  M  D+ + P + H
Sbjct: 641 GKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPH 700

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC-VKSNETELAEYISEHLLQL 701
           +  +V++L + G +  AL +I  MP + D  I  +LL  C +  N  E+AE  +  LL+L
Sbjct: 701 YSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRL 760

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           +P +   Y  LSN YA +G W +VS +R  M+   L+K PGCSW+++ +ELHVF+  D++
Sbjct: 761 DPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKA 820

Query: 762 HPKTEEIYATLALL 775
           HP+ EEIY  L L+
Sbjct: 821 HPRWEEIYEELGLI 834



 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 178/369 (48%), Gaps = 32/369 (8%)

Query: 76  QIGPE--IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC---- 129
           +I P+   +G +L+ C      Y G +IH+ I+K+G   A N  V   L+  Y+KC    
Sbjct: 436 RIEPDEFTFGSVLKACTGGSLGY-GMEIHSSIVKSG--MASNSSVGCSLIDMYSKCGMIE 492

Query: 130 DALDVASRLFCRLRVKNVF----------------SWAAIIGLNCRVGLSEKALIGFVEM 173
           +A  + SR F R  V                    SW +II        SE A + F  M
Sbjct: 493 EAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRM 552

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
            E G++PD F    VL  C  L   G G+ +H  V+K      V+++S+L+DMY KCGDL
Sbjct: 553 MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDL 612

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
            ++R +F+  + R+ V WN+MI GY  +G  EEAI++F  M LE ++P  V+  SIL A 
Sbjct: 613 HDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRAC 672

Query: 294 ANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVT 351
           A++  +D+G +  + +    G++      S++++   K G ++ A E++     E D V 
Sbjct: 673 AHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVI 732

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
           W  L+       +++V VA        + +  D++     S +  D  +W  +    +DL
Sbjct: 733 WRTLLG-VCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKV----SDL 787

Query: 412 GRSGEASRL 420
            R+    +L
Sbjct: 788 RRNMRGFKL 796


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 239/775 (30%), Positives = 380/775 (49%), Gaps = 97/775 (12%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNG--DFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
            L + C     +   +Q+H +++  G  D  A +    ++++  Y  C     A  LF  
Sbjct: 16  SLFRACSDASMVQQARQVHTQVIVGGMGDVCAPS----SRVLGLYVLCGRFRDAGNLFFE 71

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           L ++    W  +I     +G  + AL+ + +M    VSPD +  P V+KACG L  V   
Sbjct: 72  LELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLC 131

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             VH     +GF   +F  S+LI +Y   G + +AR+VFD +  R+ + WN M+ GYV++
Sbjct: 132 MVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKS 191

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G  + AI  F EM         V+ T ILS  A       G Q H + + +G E D  + 
Sbjct: 192 GDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVA 251

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD--------------- 366
           ++++  YSK G L  A  +F+ M + D VTWN LIA YVQ+G +D               
Sbjct: 252 NTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVK 311

Query: 367 -------------------------------------VVVASSIVDMYAKCERIDNAKQV 389
                                                V + S+++D+Y K   ++ A+++
Sbjct: 312 PDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKI 371

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG------- 442
           F   IL DV +   +++ Y   G + +A   F  +  EG+  N ++  SV+         
Sbjct: 372 FQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAAL 431

Query: 443 ----------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
                                       + + G+++ A + F +M       + + W ++
Sbjct: 432 KPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS----DRDSVCWNSM 487

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           IS  +QN     AI  F++M  +G K  + +++ ALSA  ++ +L  G+ +HGY+IR+  
Sbjct: 488 ISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAF 547

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
              T + ++L+DMY+KCGN+  A  VF++   K    +N++I+ Y  HG   E L L+  
Sbjct: 548 SSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHE 607

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           + + GI PD +TF  I++AC HAGLV+EG+  F  M  ++ +   MEH+ C+V+L  R G
Sbjct: 608 MLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAG 667

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            + EA   I +MP  PDA + G+LL  C      ELA+  S HLL+L+P N G YV LSN
Sbjct: 668 RVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSN 727

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
            +A +G W  V +VR +MKEKG++K PG SWI +    H+F A D +HP++ EIY
Sbjct: 728 VHADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAADGNHPESVEIY 782



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 212/455 (46%), Gaps = 58/455 (12%)

Query: 56  KEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARN 115
           K      A+    EM+     +    Y  +L  C  + +   G Q+H  ++ +G  F  +
Sbjct: 190 KSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSG--FEFD 247

Query: 116 EYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
             V   LV  Y+KC  L  A +LF  +   +  +W  +I    + G +++A   F  M  
Sbjct: 248 PQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMIS 307

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL--KVGFDGCVFVASSLIDMYGKCGDL 233
            GV PD+    + L +    G +   + VH Y++  +V FD  V++ S+LID+Y K GD+
Sbjct: 308 AGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFD--VYLKSALIDVYFKGGDV 365

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           E ARK+F   I  +V    +MI GYV +GLN +AI  F  +  EG+    +++ S+L A 
Sbjct: 366 EMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPAC 425

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A + AL  GK+ H   +   +E    +GS+I + Y+K G L+ A   F RM +RD V WN
Sbjct: 426 AAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWN 485

Query: 354 LLIASYVQSGQ------------------------------------------------- 364
            +I+S+ Q+G+                                                 
Sbjct: 486 SMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRN 545

Query: 365 ---SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
              SD  VAS+++DMY+KC  +  A  VFN +  ++ V WN+++AAY + G   E   L+
Sbjct: 546 AFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLY 605

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           ++M   GI P+ +++  +I      G ++E    F
Sbjct: 606 HEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYF 640



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 131/555 (23%), Positives = 242/555 (43%), Gaps = 84/555 (15%)

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           L ++ +AC     V   R VH  V+  G       +S ++ +Y  CG   +A  +F  + 
Sbjct: 14  LESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELE 73

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            R  + WN MI G    G  + A+  +++M    V P + +   ++ A   L+ +     
Sbjct: 74  LRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMV 133

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            H  A   G  +D   GS++I  Y+  G + DA  VF  +  RD + WN+++  YV+SG 
Sbjct: 134 VHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGD 193

Query: 365 SDVVV----------------------------------------------------ASS 372
            D  +                                                    A++
Sbjct: 194 FDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANT 253

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           +V MY+KC  +  A+++FN++   D V WN L+A Y   G + EA+ LF  M   G+ P+
Sbjct: 254 LVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPD 313

Query: 433 IISWNSVILGFLRNGQMNEAK-------------DMFLQMQSLGV--------------Q 465
            +++ S +   L +G +   K             D++L+   + V              Q
Sbjct: 314 SVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQ 373

Query: 466 PNLI----TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
            N++      T +ISG   +    +AI  F+ +++ G+  ++ T+   L AC  VA+L+ 
Sbjct: 374 QNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKP 433

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G+ +H ++++  L     + +++ DMYAKCG +  A   F     ++   +N+MIS ++ 
Sbjct: 434 GKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQ 493

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           +G    A+ LF+ +   G   DS++ ++ L+A ++   +  G E+  G    +       
Sbjct: 494 NGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMH-GYVIRNAFSSDTF 552

Query: 642 HFGCVVNLLSRCGNL 656
               ++++ S+CGNL
Sbjct: 553 VASTLIDMYSKCGNL 567



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 4/207 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ISS S+  +   A+DL  +M     +         L        +Y G+++H  +++N  
Sbjct: 488 ISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNA- 546

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F+ + +V + L+  Y+KC  L +A  +F  +  KN  SW +II      G   + L  +
Sbjct: 547 -FSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLY 605

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDGCVFVASSLIDMYGK 229
            EM   G+ PD+     ++ ACG  G V  G    H    + G    +   + ++D+YG+
Sbjct: 606 HEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGR 665

Query: 230 CGDLEEARKVFDGM-IARNVVAWNSMI 255
            G + EA      M    +   W +++
Sbjct: 666 AGRVHEAFDTIKSMPFTPDAGVWGTLL 692


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/744 (30%), Positives = 366/744 (49%), Gaps = 102/744 (13%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  LL+ C+  RD   G+ +HAR+++       +  +   L+  Y+K      A  +F  
Sbjct: 65  FSSLLKSCIRARDFRLGKLVHARLIEFD--IEPDSVLYNSLISLYSKSGDSAKAEDVFET 122

Query: 142 LR---VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
           +R    ++V SW+A++      G    A+  FVE  E G+ P+++    V++AC    +V
Sbjct: 123 MRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFV 182

Query: 199 GFGRAVHGYVLKVG-FDGCVFVASSLIDMYGKC-GDLEEARKVFDGMIARNVVAWNSMIV 256
           G GR   G+++K G F+  V V  SLIDM+ K     E A KVFD M   NVV W  MI 
Sbjct: 183 GVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMIT 242

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
             +Q G   EAIR F +M L G E  + +++S+ SA A L+ L                 
Sbjct: 243 RCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLS---------------- 286

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
              LG  + ++  + GL++D E                                 S+VDM
Sbjct: 287 ---LGKQLHSWAIRSGLVDDVEC--------------------------------SLVDM 311

Query: 377 YAKCE---RIDNAKQVFNSIILRDVVLWNTLLAAY-ADLGRSGEASRLFYQMQLEG-ISP 431
           YAKC     +D+ ++VF+ +    V+ W  L+  Y  +   + EA  LF +M  +G + P
Sbjct: 312 YAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEP 371

Query: 432 NIISW-----------------------------------NSVILGFLRNGQMNEAKDMF 456
           N  ++                                   NSVI  F+++ +M +A+  F
Sbjct: 372 NHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF 431

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
             +     + NL+++ T + G  +N    +A     E+ E  +  S  T    LS   +V
Sbjct: 432 ESLS----EKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANV 487

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
            S+R G  IH  +++  L    P+  +L+ MY+KCG+I  A RVF+   ++ +  + +MI
Sbjct: 488 GSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMI 547

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +G+A HG A+  L  F  + ++G+ P+ +T+  IL+ACSH GLV+EG   F  M+ DH++
Sbjct: 548 TGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKI 607

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
           KP MEH+ C+V+LL R G L +A   I TMP   D  +  + L  C   + TEL +  + 
Sbjct: 608 KPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAAR 667

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
            +L+L+P+ P  Y+ LSN YA +G+W E +++R  MKE+ L K  GCSWI++G+++H F 
Sbjct: 668 KILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFY 727

Query: 757 ACDRSHPKTEEIYATLALLGMHVR 780
             D +HP   +IY  L  L   ++
Sbjct: 728 VGDTAHPNAHQIYDELDRLITEIK 751



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 232/484 (47%), Gaps = 48/484 (9%)

Query: 35  ESDNSYESLYKSYFHQISSL---------SKEKQI---REAVDLLTEMKCRNFQIGPEIY 82
           + +NS+E+ YK  F ++S L         ++  Q+   REA+    +M    F+      
Sbjct: 214 KGENSFENAYK-VFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTL 272

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA---LDVASRLF 139
             +   C    ++  G+Q+H+  +++G      + VE  LV  YAKC A   +D   ++F
Sbjct: 273 SSVFSACAELENLSLGKQLHSWAIRSGLV----DDVECSLVDMYAKCSADGSVDDCRKVF 328

Query: 140 CRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGW 197
            R+   +V SW A+I G      L+ +A+  F EM   G V P++F   +  KACG L  
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
              G+ V G   K G      VA+S+I M+ K   +E+A++ F+ +  +N+V++N+ + G
Sbjct: 389 PRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDG 448

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
             +N   E+A ++  E+T   +  +  +  S+LS  AN+ ++ +G+Q H+  V  G+  +
Sbjct: 449 TCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCN 508

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
             + +++I+ YSK G ++ A  VF+ M  R++++W  +I  + + G +  V+        
Sbjct: 509 QPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVL-------- 560

Query: 378 AKCERIDNAKQVFNSIILRDV----VLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPN 432
                     + FN +I   V    V +  +L+A + +G   E  R F  M +   I P 
Sbjct: 561 ----------ETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPK 610

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
           +  +  ++    R G + +A   F  + ++  Q +++ W T +     +S      L  +
Sbjct: 611 MEHYACMVDLLCRAGLLTDA---FEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAAR 667

Query: 493 EMLE 496
           ++LE
Sbjct: 668 KILE 671



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 111/234 (47%), Gaps = 16/234 (6%)

Query: 32  KLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQ 87
           ++ ++  ++ESL +    SY   +    +     +A  LL+E+  R   +    +  LL 
Sbjct: 423 RMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLS 482

Query: 88  GCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV 147
           G      +  G+QIH++++K G   + N+ V   L+  Y+KC ++D ASR+F  +  +NV
Sbjct: 483 GVANVGSIRKGEQIHSQVVKLG--LSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNV 540

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL-----GWVGFGR 202
            SW ++I    + G + + L  F +M E+GV P+      +L AC  +     GW  F  
Sbjct: 541 ISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNS 600

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
               + +K   +      + ++D+  + G L +A +  + M    +V+ W + +
Sbjct: 601 MYEDHKIKPKMEH----YACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 494 MLETGIKP-STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           M   GI+P  + T +  L +C      R G+ +H  LI  D+   + +  SL+ +Y+K G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 553 NIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           +  +A+ VF+       +++  ++AM++ Y  +G  ++A+ +F    + G+ P+   +T 
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171

Query: 610 ILNACSHAGLVNEG 623
           ++ ACS++  V  G
Sbjct: 172 VIRACSNSDFVGVG 185


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/699 (32%), Positives = 376/699 (53%), Gaps = 30/699 (4%)

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
            +LL       D+  G+ +H R+L++ +    +  V   L+  Y+KC A++ A R+F ++
Sbjct: 44  AKLLTSAARAGDLRLGRALHRRLLRS-EILDTDAVVANSLLTMYSKCGAVEAARRVFDQM 102

Query: 143 -RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF- 200
             V+++ SW A+     R G   ++L    EM E G+ P+ F L    +AC         
Sbjct: 103 CGVRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLA 162

Query: 201 GRAVHGYVLKVGFDGC-VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           G  V G+VLK GF G  V V  +LIDM+ + GDL  A++VFDG+I R  V W  +I  YV
Sbjct: 163 GGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYV 222

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           Q G   + + +F  M  +G EP   S++S++SA   L ++  G+Q H+VA+  G+  D+ 
Sbjct: 223 QAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSC 282

Query: 320 LGSSIINFYSKVGL---LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
           +   +++ Y+K+ +   +E A  VF  M   ++++W  LI+ YVQSG    V  ++++ +
Sbjct: 283 VSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSG----VQENNVMAL 338

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           +         +++ N  I  + + ++ LL A A+L       ++   +    I+   +  
Sbjct: 339 F---------REMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVG 389

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           N+++  +  +G M EA+  F Q+     + N+++ +  +     N+  +  I    E ++
Sbjct: 390 NALVSMYAESGCMEEARKAFDQL----YETNILSMSPDVETERNNASCSSKI----EGMD 441

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
            G+  ST T    LSA   V  L  G+ +H   ++        I  SLV MYA+CG +  
Sbjct: 442 DGV--STFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLED 499

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A R FD      +  + ++ISG A HG A +AL++F ++   G+ P+ +T+  +L+ACSH
Sbjct: 500 ACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSH 559

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            GLV EG E F  M  DH + P MEH+ C+V+LL+R G ++EA + I  MPC  DA +  
Sbjct: 560 VGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWK 619

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +LLS C     TE+ E  + H++ LEP +P  YV LSN YA +G W+EV+++R +M++K 
Sbjct: 620 TLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKN 679

Query: 737 LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           L K  G SW+ +G  +H F A D SHP   +IYA L  L
Sbjct: 680 LSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTL 718



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 142/601 (23%), Positives = 252/601 (41%), Gaps = 85/601 (14%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           + V+L   M    F+        ++  C     +  GQQ+H+  L+ G     +  V   
Sbjct: 229 KVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLG--LVSDSCVSCG 286

Query: 122 LVVFYAKCD---ALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG-FVEMQEDG 177
           LV  YAK     +++ A ++F  +   NV SW A+I    + G+ E  ++  F EM  + 
Sbjct: 287 LVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNES 346

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           + P++    N+LKAC  L     GR +H +VLK        V ++L+ MY + G +EEAR
Sbjct: 347 IRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEAR 406

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
           K FD +   N+++ +      V+   N  +     E   +GV  +  +  S+LSA+A++ 
Sbjct: 407 KAFDQLYETNILSMSP----DVETERNNASCSSKIEGMDDGV--STFTFASLLSAAASVG 460

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
            L +G++ HA+++  G   D  + +S+++ Y++ G LEDA   F  M + ++++W  +I+
Sbjct: 461 LLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIIS 520

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
              + G             YAK                                    +A
Sbjct: 521 GLAKHG-------------YAK------------------------------------QA 531

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLIS 476
             +F+ M L G+ PN +++ +V+      G + E K+ F  MQ   G+ P +  +  ++ 
Sbjct: 532 LSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVD 591

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
            L ++    EA  F  EM     K         LSAC    +   G     ++I  +   
Sbjct: 592 LLARSGLVEEARQFINEM---PCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRD 648

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP------------VYNAMISGYAMHGL 584
           P P V  L ++YA  G   +  R+  +   K L               +   +G   H L
Sbjct: 649 PAPYVL-LSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPL 707

Query: 585 AVEALA----LFKNLQQKGIDPD-SITFTNILNACSHAGLV--NEGLELFVGMFSDHQVK 637
           A++  A    L + ++  G  PD SI   ++        L+  +E + +  G+ +    K
Sbjct: 708 AIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQYLLQHSEKIAVAFGLITTSATK 767

Query: 638 P 638
           P
Sbjct: 768 P 768


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/648 (33%), Positives = 347/648 (53%), Gaps = 26/648 (4%)

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           K+   W   + +    G  ++A+  F EMQ  GV+ D + L  VL ACG       G+AV
Sbjct: 132 KDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAV 191

Query: 205 HGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKVF-DGMIARNVVAWNSMIVGYVQNG 262
           H + LK G  D    V   L  MY +  D+  A  V          VAW++++   V+ G
Sbjct: 192 HAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLG 251

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI-----NGMELD 317
           L ++A+ +   M  +G EPT  +  ++LS  A       G+   A+AV+      G+  D
Sbjct: 252 LVDDAMELAGRMARDGPEPTLATWNAVLSGCAR-----HGRDREALAVLRRMLEQGLWPD 306

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
               SS++   +  G++     V    +   +V               D    +++VDMY
Sbjct: 307 ATTVSSLLKSVANAGMVRHGMEVHCFFLRHGLV--------------PDAYTGTALVDMY 352

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           AKC R+D A++VF+++  R++  WN+L+A +A  G+   A  L  +M+   + PN+ +WN
Sbjct: 353 AKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWN 412

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
            +I G+  NG  ++A  +  Q+++ G+ PN+++WT+LISG   N    ++  FF+EM + 
Sbjct: 413 GLITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKD 472

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           G++PS  T+   L AC  +A L+ G+ +H + +R        + T+L+DMY+K G++  A
Sbjct: 473 GVQPSLVTMLVLLRACAGLALLKKGKELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSA 532

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           KR+F    +K L   NAM++G A+HG + EA+ LF +L + G+ PDSITFT +L AC   
Sbjct: 533 KRIFGRIQNKNLVCCNAMLTGLAVHGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSM 592

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           GL+ EG E F  M + + V P+ E++ C+V+LL+R G LDEA+ +I   P DP A + G+
Sbjct: 593 GLITEGWEYFDNMETKYGVVPTAENYACMVDLLARSGYLDEAMALIERSPVDPGASLWGA 652

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           LL+ C      +LAE  + +L +LEP N  NY+ + + Y     ++E   ++  MK +G+
Sbjct: 653 LLTGCSIHGNLDLAEVAARNLFRLEPYNSANYLMIMSLYEHEQMYDEADSLKYAMKARGV 712

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
              PG SWIQI + +HVF      HP+T EI   L  L   +++   V
Sbjct: 713 NTRPGWSWIQIEQGIHVFEVDGSPHPETAEICEELMSLVRQIKMTGYV 760



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/536 (22%), Positives = 207/536 (38%), Gaps = 123/536 (22%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           Q++ L++  +  EA+    EM+ R           +L  C        G+ +HA  LK G
Sbjct: 140 QVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAVHAHALKAG 199

Query: 110 -------------DFFARNEYVETKLVVFY---------------AKC-------DALDV 134
                          +A    V     V                 A C       DA+++
Sbjct: 200 LVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVDDAMEL 259

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A R+        + +W A++    R G   +AL     M E G+ PD   + ++LK+   
Sbjct: 260 AGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVAN 319

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS- 253
            G V  G  VH + L+ G     +  ++L+DMY KCG L+ AR+VFD +  RN+  WNS 
Sbjct: 320 AGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSL 379

Query: 254 ----------------------------------MIVGYVQNGLNEEAIRVFYEMTLEGV 279
                                             +I GY  NGL+ +A+ +  ++   G+
Sbjct: 380 VAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGL 439

Query: 280 EPTRVSVTSILSAS-----------------------------------ANLDALDEGKQ 304
            P  VS TS++S S                                   A L  L +GK+
Sbjct: 440 TPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKE 499

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            H  A+    + D V+G+++I+ YSK G L  A+ +F R+  +++V  N ++      GQ
Sbjct: 500 LHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQ 559

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
           S               E I     ++ S +  D + +  LL A   +G   E    F  M
Sbjct: 560 SH--------------EAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNM 605

Query: 425 QLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           + + G+ P   ++  ++    R+G ++EA  +   ++   V P    W  L++G +
Sbjct: 606 ETKYGVVPTAENYACMVDLLARSGYLDEAMAL---IERSPVDPGASLWGALLTGCS 658



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 116/295 (39%), Gaps = 73/295 (24%)

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
           A LGR   + RL  +        + + WN  +      G+ +EA   F +MQ+ GV  + 
Sbjct: 110 ARLGRGPSSRRLLEEADESEGGKDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAAD- 168

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
                                                +   L AC   A+ R G+A+H +
Sbjct: 169 ----------------------------------GYALARVLHACGRAAARREGKAVHAH 194

Query: 529 LIRHDLCLPTPIVTS-LVDMYAKCGNIHQAK----------------------------- 558
            ++  L    P+V   L  MYA+  ++  A                              
Sbjct: 195 ALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVD 254

Query: 559 -------RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
                  R+    P   L  +NA++SG A HG   EALA+ + + ++G+ PD+ T +++L
Sbjct: 255 DAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLL 314

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
            + ++AG+V  G+E+    F  H + P       +V++ ++CG LD A RV  T+
Sbjct: 315 KSVANAGMVRHGMEVHC-FFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTL 368



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 99/234 (42%), Gaps = 7/234 (2%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS      +  ++ +   EM+    Q        LL+ C     +  G+++H   
Sbjct: 445 SWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELHCFA 504

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           L+    +  +  V T L+  Y+K  +L  A R+F R++ KN+    A++      G S +
Sbjct: 505 LRRA--YDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSHE 562

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDGCVFVASSLI 224
           A+  F ++   G+ PD+     +L AC ++G +  G         K G        + ++
Sbjct: 563 AITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACMV 622

Query: 225 DMYGKCGDLEEARKVFD-GMIARNVVAWNSMIVGYVQNG---LNEEAIRVFYEM 274
           D+  + G L+EA  + +   +      W +++ G   +G   L E A R  + +
Sbjct: 623 DLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRL 676


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/664 (34%), Positives = 336/664 (50%), Gaps = 67/664 (10%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D+     +L  C     V   R VH  ++K  F   +F+ + L+D+YGKCG LE+ARKVF
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 241 DGMIARNVVAWNS-------------------------------MIVGYVQNGLNEEAIR 269
           D M  RN  +WN+                               M+ G+ Q    EEA+R
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329
              +M  E       S  S LSA A L  L  G Q H +   +   LD  +GS++++ YS
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASS 372
           K  ++  A+  F  M  R+IV+WN LI  Y Q+G                 + D +  +S
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLAS 257

Query: 373 IVDMYAKCERIDNAKQVFNSIILRD-----VVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           +    A    I    Q+   ++  D     +VL N L+  YA   R  EA  +F +M L 
Sbjct: 258 VASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
               +++S  S++ G+ +   +  A+ MF  M    ++ N+++W  LI+G TQN    EA
Sbjct: 318 ----DVVSETSMVSGYAKASSVKAARLMFSNM----MERNVVSWNALIAGYTQNGENEEA 369

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP------IV 541
           +  F  +    I P+  T    L+AC ++A L+ GR  H ++++H     +       + 
Sbjct: 370 VRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVG 429

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
            SL+DMY KCG +   + VF+    ++   +NAMI GYA +G   EAL +F+ +   G  
Sbjct: 430 NSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGER 489

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
           PD +T   +L+ACSHAGLV EG   F  M  +H + P  +H+ C+V+LL R G LDEA  
Sbjct: 490 PDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANN 549

Query: 662 VILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721
           +I TMP +PDA + GSLL+ C       L +Y++E LL+++P N G YV LSN YA  GR
Sbjct: 550 LIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGR 609

Query: 722 WNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
           W +V +VR  M++ G+ K PGCSWI I   LHVF+  D+ HP  ++IY  L +L   ++ 
Sbjct: 610 WKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMKR 669

Query: 782 VSKV 785
           V  V
Sbjct: 670 VGYV 673



 Score =  236 bits (602), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 158/577 (27%), Positives = 273/577 (47%), Gaps = 99/577 (17%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           + +LL  CV  + ++  + +HARI+K    F+   +++ +LV  Y KC  L+ A ++F  
Sbjct: 22  FAKLLDTCVKSKSVFEARLVHARIIKTQ--FSSEIFIQNRLVDVYGKCGFLEDARKVFDH 79

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGF------------------------------- 170
           ++ +N FSW A++G   + G  ++AL  F                               
Sbjct: 80  MQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFV 139

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           V+M  +    + +   + L AC  L  +  G  +HG + K  +   V++ S+L+DMY KC
Sbjct: 140 VDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKC 199

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             +  A++ FD M  RN+V+WNS+I  Y QNG   +A+ VF  M   G+EP  +++ S+ 
Sbjct: 200 RVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVA 259

Query: 291 SASANLDALDEGKQAHA-VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           SA A+L A+ EG Q HA V   +    D VLG+++++ Y+K   + +A +VF RM  RD+
Sbjct: 260 SACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDV 319

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
           V+                   +S+V  YAK   +  A+ +F++++ R+VV WN L+A Y 
Sbjct: 320 VS------------------ETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYT 361

Query: 410 DLGRSGEASRLFYQMQLEGISP-------------------------------------- 431
             G + EA RLF  ++ E I P                                      
Sbjct: 362 QNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSG 421

Query: 432 ---NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
              +I   NS+I  +++ G + + + +F +M    ++ + ++W  +I G  QN  G EA+
Sbjct: 422 EDSDIFVGNSLIDMYMKCGLVEDGRLVFERM----LERDNVSWNAMIVGYAQNGYGTEAL 477

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA-IHGYLIRHDLCLPTPIVTSLVDM 547
             F+EML +G +P   T+   LSAC+    +  GR       I H L       T +VD+
Sbjct: 478 EIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDL 537

Query: 548 YAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMHG 583
             + G + +A  +    P + +  V+ ++++   +HG
Sbjct: 538 LGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHG 574



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 205/420 (48%), Gaps = 67/420 (15%)

Query: 98  GQQIHARILKNG-------------DFFARNEYV-----------------ETKLVVFYA 127
           G QIHAR++K+              D +A+   V                 ET +V  YA
Sbjct: 271 GLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYA 330

Query: 128 KCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPN 187
           K  ++  A  +F  +  +NV SW A+I    + G +E+A+  F+ ++ + + P ++   N
Sbjct: 331 KASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGN 390

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGF------DGCVFVASSLIDMYGKCGDLEEARKVFD 241
           +L AC  L  +  GR  H ++LK GF      D  +FV +SLIDMY KCG +E+ R VF+
Sbjct: 391 LLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFE 450

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M+ R+ V+WN+MIVGY QNG   EA+ +F EM + G  P  V++  +LSA ++   ++E
Sbjct: 451 RMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEE 510

Query: 302 GK-QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASY 359
           G+    ++ + +G+       + +++   + G L++A  +   M +E D V W  L+A+ 
Sbjct: 511 GRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAAC 570

Query: 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
              G  ++ +   + +   + + +++   V              L   YA+LGR  +  R
Sbjct: 571 KVHG--NITLGKYVAERLLEIDPLNSGPYVL-------------LSNMYAELGRWKDVVR 615

Query: 420 LFYQMQLEGI--SPNIISWNSVI----LGFLRNGQMNEAKDMFL-------QMQSLGVQP 466
           +  QM+  G+   P   SW S+     +  +++ +    KD++L       QM+ +G  P
Sbjct: 616 VRKQMRQMGVIKQPG-CSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMKRVGYVP 674



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 18/219 (8%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+  ++  +  EAV L   +K  +       +G LL  C    D+  G+Q H  ILK+G 
Sbjct: 357 IAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGF 416

Query: 111 FFARNE----YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA 166
           +F   E    +V   L+  Y KC  ++    +F R+  ++  SW A+I    + G   +A
Sbjct: 417 WFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEA 476

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-------HGYVLKVGFDGCVFV 219
           L  F EM   G  PD+  +  VL AC   G V  GR         HG V       C   
Sbjct: 477 LEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTC--- 533

Query: 220 ASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVG 257
              ++D+ G+ G L+EA  +   M +  + V W S++  
Sbjct: 534 ---MVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAA 569


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 222/714 (31%), Positives = 394/714 (55%), Gaps = 23/714 (3%)

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           + +A+  L  M+     +  + +  L++ C  KR    G+ +   +L +      +  + 
Sbjct: 14  LEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLL-SVRLG 72

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
             L+  + +   +  A  +F R+  +++FSW  ++G   + G  ++AL  +  +   G+ 
Sbjct: 73  NALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIR 132

Query: 180 PDNFVLPNVLKAC-GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           PD +  P+VL++C GA+  V  GR VH +V++  FD  V V ++LI MY KCGD+  AR 
Sbjct: 133 PDVYTFPSVLRSCAGAMDLVR-GREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARM 191

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +FD M  R+ ++WN+MI GY +N    E + +F+ M    ++P  +++TS++SA   L  
Sbjct: 192 LFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGD 251

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
              G Q H+  V    + +  + +S+I  Y  VG  ++AE VFS M  RD+V+W  +I  
Sbjct: 252 ERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTII-- 309

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
              SG  D ++    ++ Y   E             + D V   ++L+A A LG+     
Sbjct: 310 ---SGCVDNLLPDKALETYKTMEITGT---------MPDEVTIASVLSACASLGQLDMGM 357

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
           +L    +  G    ++  NS+I  + +  ++ +A ++F Q+       ++I+WT++I+GL
Sbjct: 358 KLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIP----DKDVISWTSVINGL 413

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
             N+   EA++FF++M+    KP++ T+  ALSAC  V +L  G+ IH + ++  +    
Sbjct: 414 RINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDG 472

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            +  +++D+Y +CG +  A   F+++  K++  +N +++GYA  G     + LFK + + 
Sbjct: 473 FLPNAILDLYVRCGRMRTALNQFNLN-EKDVGAWNILLTGYAQKGKGAMVMELFKRMVES 531

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
            I+PD +TF ++L ACS +G+V EGLE F  M  ++ + P+++H+ CVV+LL R G L+E
Sbjct: 532 EINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNE 591

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           A   I  MP  PD  I G+LL+ C       L E  ++H+ + + ++ G Y+ L N YA 
Sbjct: 592 AHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYAD 651

Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           SG+W+EV++VR  MKE+GL  +PGCSW+++  ++H F++ D  HP+ +EI   L
Sbjct: 652 SGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVL 705


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/680 (31%), Positives = 355/680 (52%), Gaps = 92/680 (13%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           +VL+ C  L  +  G+ VH  +   G      + + L+ MY  CGDL + R++FDG++  
Sbjct: 62  SVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILND 121

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
            +  WN ++  Y + G   E++ +F +M   G+     + T +L   A    + E K+ H
Sbjct: 122 KIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVH 181

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS- 365
              +  G    N + +S+I  Y K G +E A ++F  + +RD+V+WN +I+    +G S 
Sbjct: 182 GYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSR 241

Query: 366 ----------------------DVVVA-----------------------------SSIV 374
                                 +V+VA                             ++++
Sbjct: 242 NGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLL 301

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
           DMY+KC  ++ A +VF  +    +V W +++AA+   G   EA  LF +MQ +G+ P+I 
Sbjct: 302 DMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIY 361

Query: 435 SWNSVILG-----------------------------------FLRNGQMNEAKDMFLQM 459
           +  SV+                                     + + G M EA  +F Q+
Sbjct: 362 AVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQL 421

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
                  N+++W T+I G +QNS  NEA+  F +M +  +KP   T+ C L AC  +A+L
Sbjct: 422 PV----KNIVSWNTMIGGYSQNSLPNEALQLFLDM-QKQLKPDDVTMACVLPACAGLAAL 476

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
             GR IHG+++R        +  +LVDMY KCG +  A+++FD+ P K++ ++  MI+GY
Sbjct: 477 EKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGY 536

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
            MHG   EA++ F+ ++  GI+P+  +FT+IL AC+H+GL+ EG +LF  M S+  ++P 
Sbjct: 537 GMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPK 596

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           +EH+ C+V+LL R GNL  A + I TMP  PDA I G+LLS C   ++ ELAE ++EH+ 
Sbjct: 597 LEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIF 656

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           +LEP+N   YV L+N YA + +W EV +++  + + GL+ + GCSWI++  + ++F A D
Sbjct: 657 ELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFAGD 716

Query: 760 RSHPKTEEIYATLALLGMHV 779
            SHP+ + I + L  L M +
Sbjct: 717 TSHPQAKMIDSLLRKLTMKM 736



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 146/264 (55%), Gaps = 7/264 (2%)

Query: 41  ESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTG 98
           E+   S+   I++  +E    EA+ L  EM+ +  +  P+IY    ++  C     +  G
Sbjct: 322 ETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLR--PDIYAVTSVVHACACSNSLDKG 379

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +++H  I KN      N  V   L+  YAKC +++ A+ +F +L VKN+ SW  +IG   
Sbjct: 380 REVHNHIKKNN--MGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYS 437

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +  L  +AL  F++MQ+  + PD+  +  VL AC  L  +  GR +HG++L+ G+   + 
Sbjct: 438 QNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLH 496

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           VA +L+DMY KCG L  A+++FD +  ++++ W  MI GY  +G  +EAI  F +M + G
Sbjct: 497 VACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAG 556

Query: 279 VEPTRVSVTSILSASANLDALDEG 302
           +EP   S TSIL A  +   L EG
Sbjct: 557 IEPEESSFTSILYACTHSGLLKEG 580


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/571 (34%), Positives = 330/571 (57%), Gaps = 30/571 (5%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           ++  Y K G+L  AR +F+ M  ++VV+WN+M+ G+ QNG  EEA ++F +M ++     
Sbjct: 128 MLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVK----N 183

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
            +S   +LSA      +++ ++       + M+ + V  + ++  Y +   L+DA  +F 
Sbjct: 184 EISWNGLLSAYVQNGRIEDARRLFD----SKMDWEIVSWNCLMGGYVRKKRLDDARSLFD 239

Query: 343 RMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQV 389
           RM  RD ++WN++I  Y Q+G               DV   +++V  + +   +D A ++
Sbjct: 240 RMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRI 299

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F  +  ++ V WN ++A Y    +  +A  LF QM     S N  SWN+++ G+ + G +
Sbjct: 300 FEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMP----SRNTSSWNTMVTGYAQCGNI 355

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           ++AK +F +M     Q + I+W  +ISG  Q+    EA+  F +M   G   + + + CA
Sbjct: 356 DQAKILFDEMP----QRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACA 411

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           LS+C ++A+L  G+ +HG L++           +L+ MY KCG+I +A  VF+    K++
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +N MI+GYA HG   EALALF++++   I PD +T   +L+ACSH GLV++G+E F  
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNS 530

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M+ ++ +  + +H+ C+++LL R G LDEAL ++ +MP  PDA   G+LL       +TE
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTE 590

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           L E  +E + ++EPDN G YV LSN YAASGRW EV ++R  M++KG++K PG SW++I 
Sbjct: 591 LGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQ 650

Query: 750 EELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            + H+F   D SHP+ E IYA L  L + ++
Sbjct: 651 NKTHIFTVGDCSHPEAERIYAYLEELDLELK 681



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 139/609 (22%), Positives = 256/609 (42%), Gaps = 120/609 (19%)

Query: 31  TKLRESDNSYESLYKS----YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELL 86
           T+  ES NS  ++  S    +  +IS+  ++ Q   A+ +   M+ R+       Y  ++
Sbjct: 43  TQKLESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRS----TVTYNAMI 98

Query: 87  QGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN 146
            G +        +++  + + + D  + N      ++  Y K   L  A  LF ++  K+
Sbjct: 99  SGYLSNNKFDCARKVFEK-MPDRDLISWN-----VMLSGYVKNGNLSAARALFNQMPEKD 152

Query: 147 VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL-GWVGFGRAVH 205
           V SW A++    + G  E+A   F          D  ++ N +   G L  +V  GR   
Sbjct: 153 VVSWNAMLSGFAQNGFVEEARKIF----------DQMLVKNEISWNGLLSAYVQNGRIED 202

Query: 206 GYVL-KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
              L     D  +   + L+  Y +   L++AR +FD M  R+ ++WN MI GY QNGL 
Sbjct: 203 ARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLL 262

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
            EA R+F E+      P R                                 D    +++
Sbjct: 263 SEARRLFEEL------PIR---------------------------------DVFAWTAM 283

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVAS 371
           ++ + + G+L++A  +F  M E++ V+WN +IA YVQS Q              +    +
Sbjct: 284 VSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWN 343

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE---- 427
           ++V  YA+C  ID AK +F+ +  RD + W  +++ YA  G+S EA  LF +M+ +    
Sbjct: 344 TMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGIL 403

Query: 428 -------------------------------GISPNIISWNSVILGFLRNGQMNEAKDMF 456
                                          G     I+ N+++  + + G + EA D+F
Sbjct: 404 NRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVF 463

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
             +     + ++++W T+I+G  ++  G EA+  F+ M  T IKP   T+   LSAC+  
Sbjct: 464 EDI----TEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHT 518

Query: 517 ASLRNGRAIHGYLIR-HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNA 574
             +  G      + + + +       T ++D+  + G + +A  +    P   +   + A
Sbjct: 519 GLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGA 578

Query: 575 MISGYAMHG 583
           ++    +HG
Sbjct: 579 LLGASRIHG 587



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 138/257 (53%), Gaps = 3/257 (1%)

Query: 113 ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
           +RN      +V  YA+C  +D A  LF  +  ++  SWAA+I    + G SE+AL  F++
Sbjct: 336 SRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIK 395

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M+ DG   +   L   L +C  +  +  G+ +HG ++K GF       ++L+ MYGKCG 
Sbjct: 396 MKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGS 455

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           +EEA  VF+ +  +++V+WN+MI GY ++G  +EA+ +F  M +  ++P  V++  +LSA
Sbjct: 456 IEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSA 514

Query: 293 SANLDALDEGKQAHAVAVIN-GMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIV 350
            ++   +D+G +       N G+  +    + +I+   + G L++A  +   M    D  
Sbjct: 515 CSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAA 574

Query: 351 TWNLLIASYVQSGQSDV 367
           TW  L+ +    G +++
Sbjct: 575 TWGALLGASRIHGDTEL 591



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 175/366 (47%), Gaps = 39/366 (10%)

Query: 342 SRMVERDIVTWNLLIASYVQSGQSD-------------VVVASSIVDMYAKCERIDNAKQ 388
           S +V+ DIV WN  I++Y++ GQ +              V  ++++  Y    + D A++
Sbjct: 53  STIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARK 112

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           VF  +  RD++ WN +L+ Y   G    A  LF QM       +++SWN+++ GF +NG 
Sbjct: 113 VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQNGF 168

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           + EA+ +F QM    +  N I+W  L+S   QN    +A   F   ++  I     +  C
Sbjct: 169 VEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEI----VSWNC 220

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            +        L + R++   +   D      ++T     YA+ G + +A+R+F+  P ++
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITG----YAQNGLLSEARRLFEELPIRD 276

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           +  + AM+SG+  +G+  EA  +F+ + +K    + +++  ++     +  + +  ELF 
Sbjct: 277 VFAWTAMVSGFVQNGMLDEATRIFEEMPEK----NEVSWNAMIAGYVQSQQIEKARELF- 331

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
               D     +   +  +V   ++CGN+D+A  +   MP   D     +++S   +S ++
Sbjct: 332 ----DQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMP-QRDCISWAAMISGYAQSGQS 386

Query: 689 ELAEYI 694
           E A ++
Sbjct: 387 EEALHL 392


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/727 (32%), Positives = 372/727 (51%), Gaps = 69/727 (9%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
            +++H + +K G  F  N ++   L+  Y +   L  A +LF  +  +N+ +WA +I   
Sbjct: 118 ARELHLQSIKYG--FVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 175

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG--FGRAVHGYVLKVGFDG 215
            + G  ++A   F +M   G  P+++   + L+AC   G  G   G  +HG + K  +  
Sbjct: 176 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGS 235

Query: 216 CVFVASSLIDMYGKCGD-LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
            V V + LI MYG C D   +AR VFDG+  RN ++WNS+I  Y + G    A  +F  M
Sbjct: 236 DVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSM 295

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV-LGSSIINFYSKVGL 333
             EG+  +     +    S   +   +G++ HA  +  G+  + V +G+ ++N Y+K G 
Sbjct: 296 QKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGA 355

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           + DA  VF  MVE+D V+WN LI+   Q+                  E  ++A ++F+ +
Sbjct: 356 IADACSVFELMVEKDSVSWNSLISGLDQN------------------ECSEDAAEMFSLM 397

Query: 394 ILRDVVLWNTLLAAYADLGRS-GEASRLFYQMQLEG------------------------ 428
              D V WN+++ A +D   S  +A + F QM   G                        
Sbjct: 398 PEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVS 457

Query: 429 -----------ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
                      +S +    N+++  + + G+MNE + +F +M       + ++W ++ISG
Sbjct: 458 HQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSE---TRDEVSWNSMISG 514

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
              N   ++A+     M++ G +  + T    LSAC  VA+L  G  +H   IR   CL 
Sbjct: 515 YIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIR--ACLE 572

Query: 538 TPIV--TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           + +V  ++LVDMY+KCG I  A R F++ P + +  +N+MISGYA HG   +AL LF  +
Sbjct: 573 SDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRM 632

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
              G  PD +TF  +L+ACSH G V EG E F  M   +++ P +EHF C+V+LL R G 
Sbjct: 633 MLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGK 692

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSN--ETELAEYISEHLLQLEPDNPGNYVALS 713
           LDE    I +MP  P+  I  ++L  C ++N   TEL    +E LL+LEP N  NYV L+
Sbjct: 693 LDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLA 752

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           N YA+  +W +V++ R  MKE  ++K  GCSW+ + + +HVFVA D+ HP+ + IY  L 
Sbjct: 753 NMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLR 812

Query: 774 LLGMHVR 780
            L   +R
Sbjct: 813 ELNRKMR 819



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 131/574 (22%), Positives = 242/574 (42%), Gaps = 151/574 (26%)

Query: 287 TSILSASANLDAL----------DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           T++ S+S   ++L          +E ++ H  ++  G   +  L +++IN Y ++G L  
Sbjct: 93  TTLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGS 152

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQ--------SDVVVASSIVDMYA------KCER 382
           A+ +F  M  R++VTW  LI+ Y Q+G+         D+V A  I + YA       C+ 
Sbjct: 153 AQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQE 212

Query: 383 -----------------------------------------IDNAKQVFNSIILRDVVLW 401
                                                     ++A+ VF+ I +R+ + W
Sbjct: 213 SGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISW 272

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGI----SPNI------------------------ 433
           N++++ Y+  G +  A  LF  MQ EG+     PN                         
Sbjct: 273 NSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIR 332

Query: 434 --ISWNSVILG------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG- 484
             ++ N V +G      + ++G + +A  +F     L V+ + ++W +LISGL QN C  
Sbjct: 333 TGLNDNKVAIGNGLVNMYAKSGAIADACSVF----ELMVEKDSVSWNSLISGLDQNECSE 388

Query: 485 -------------------------------NEAILFFQEMLETGIKPSTTTITCALSAC 513
                                          ++A+ +F +M+  G   S  T    LSA 
Sbjct: 389 DAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAV 448

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVY 572
           + ++       IH  ++++ L   T I  +L+  Y KCG +++ +++F  +S +++   +
Sbjct: 449 SSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSW 508

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF----- 627
           N+MISGY  + L  +A+ L   + QKG   DS TF  IL+AC+    +  G+E+      
Sbjct: 509 NSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIR 568

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             + SD  V  ++      V++ S+CG +D A R    MP   + +   S++S   +   
Sbjct: 569 ACLESDVVVGSAL------VDMYSKCGRIDYASRFFELMPL-RNVYSWNSMISGYARHGH 621

Query: 688 TELA-EYISEHLLQLEPDNPGNYVALSNAYAASG 720
            E A +  +  +L  +P +   +V + +A +  G
Sbjct: 622 GEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVG 655



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 13/246 (5%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ S+   Y H        + + +A+DL+  M  +  ++    +  +L  C     +  G
Sbjct: 507 SWNSMISGYIHN-------ELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERG 559

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
            ++HA  ++       +  V + LV  Y+KC  +D ASR F  + ++NV+SW ++I    
Sbjct: 560 MEVHACGIRA--CLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYA 617

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCV 217
           R G  EKAL  F  M  DG  PD+     VL AC  +G+V  G      + +V      V
Sbjct: 618 RHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRV 677

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQ-NGLNEEAIRVFYEMT 275
              S ++D+ G+ G L+E     + M  + NV+ W +++    + NG N E  R   EM 
Sbjct: 678 EHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEML 737

Query: 276 LEGVEP 281
           LE +EP
Sbjct: 738 LE-LEP 742


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/618 (33%), Positives = 319/618 (51%), Gaps = 62/618 (10%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDM--YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           + +H  ++K G     F  S LI+       GDL  A  +F  +   N V WN MI G  
Sbjct: 45  KQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLS 104

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
            +     A+  +  M   G EP   +  SI  +   +    EGKQ HA  +  G+E +  
Sbjct: 105 SSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAF 164

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           + +S+IN Y++ G L +A +VF +   RD V++  LI  Y   G                
Sbjct: 165 VHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKG---------------- 208

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII----- 434
              +D A+++F+ I +RDVV WN +++ YA  GR  EA   F +M+   ++PN+      
Sbjct: 209 --FLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSV 266

Query: 435 ------------------SW-------------NSVILGFLRNGQMNEAKDMFLQMQSLG 463
                             SW             N +I  +++ G + EA ++F ++Q   
Sbjct: 267 LSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQ--- 323

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
              N+++W  +I G T  SC  EA+  F+ M+++ I P+  T    L AC ++ +L  G+
Sbjct: 324 -DKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGK 382

Query: 524 AIHGYLIRHDLCLPTPIV--TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
            +H Y+ ++   +   +   TSL+DMYAKCG++  AKR+FD   +K L  +NAMISG+AM
Sbjct: 383 WVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAM 442

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HG    AL LF  +  +G  PD ITF  +L AC HAGL++ G   F  M  D++V P + 
Sbjct: 443 HGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLP 502

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+GC+++L  R G  DEA  ++  M   PD  I  SLL  C      ELAE +++HL +L
Sbjct: 503 HYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFEL 562

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           EP+NP  YV LSN YA +GRW +V+++R  + +  ++K PGCS I++   +H F+  D+ 
Sbjct: 563 EPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKV 622

Query: 762 HPKTEEIYATLALLGMHV 779
           HP++ EIY  L  + M +
Sbjct: 623 HPQSNEIYKMLDEIDMRL 640



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 131/462 (28%), Positives = 211/462 (45%), Gaps = 54/462 (11%)

Query: 49  HQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKN 108
           H I  LS  +    A++    M     +     +  + + C   R  + G+Q+HA +LK 
Sbjct: 98  HMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKL 157

Query: 109 GDFFARNEYVETKLVVFYAKC----------------DA---------------LDVASR 137
           G     N +V T L+  YA+                 DA               LD A  
Sbjct: 158 G--LEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARE 215

Query: 138 LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW 197
           LF  + V++V SW A+I    + G  E+A+  F EM+   V+P+   + +VL AC   G 
Sbjct: 216 LFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGS 275

Query: 198 -VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
            +  G  V  ++   G    + + + LIDMY KCGDLEEA  +F+ +  +NVV+WN MI 
Sbjct: 276 SLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIG 335

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           GY      +EA+ +F  M    ++P  V+  SIL A ANL ALD GK  HA    N   +
Sbjct: 336 GYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSM 395

Query: 317 DNV--LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIV 374
            N   L +S+I+ Y+K G L  A+ +F  M  + + TWN +I+ +   G +D  +     
Sbjct: 396 KNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALG---- 451

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNI 433
            ++++         + +   + D + +  +L A    G      R F  M Q   +SP +
Sbjct: 452 -LFSR---------MTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKL 501

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
             +  +I  F R G  +EA+ +   M+   ++P+   W +L+
Sbjct: 502 PHYGCMIDLFGRAGLFDEAETLVKNME---MKPDGAIWCSLL 540


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 238/714 (33%), Positives = 368/714 (51%), Gaps = 44/714 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  +K     EA+    E+K    +      G +L        +  G  +HA+  K G 
Sbjct: 281 ISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEG- 339

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               N YV + LV  YAKC  +D A ++F  L  +N+  W A++G   + GL+++ +  F
Sbjct: 340 -LDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFF 398

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M+  G  PD F   ++  AC +L ++ FG  +H  ++K  F   +FVA++L+DMY K 
Sbjct: 399 SCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKS 458

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L+EARK F+ M   + V+WN++IVGYVQ   N+EA  +F  M   GV P  VS+ SI+
Sbjct: 459 GALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIV 518

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA AN+  L  G+Q H + V  G++     GSS+I+ Y K G++  A  VF  M  R++V
Sbjct: 519 SACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVV 578

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           + N LIA Y                       ++ A  +F  I +  +       A   D
Sbjct: 579 SVNALIAGYTMG-------------------HLEEAIHLFQEIQMVGLKPTEVTFAGLLD 619

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS--------- 461
            G  G A  L    Q+ G    ++ W     GFL + +M     + L M S         
Sbjct: 620 -GCDG-AFMLNLGRQIHG---QVMKW-----GFLSSSEMVCVSLLCLYMNSQRFVDSETL 669

Query: 462 ---LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
              L     L+ WT LISG  Q +   +A+ F+Q M    I P        L AC  ++S
Sbjct: 670 FSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSS 729

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMIS 577
           L+NG+ IH  +      +     +SL+DMYAKCG++  + +VF   P +   + +N+MI 
Sbjct: 730 LQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIV 789

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
           G A +G A EAL +FK ++Q+ I PD +TF  +L+ACSHAG V+EG ++F  M ++++++
Sbjct: 790 GLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVNNYKLQ 849

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
           P ++H GC+V++L R G L+EA   I  + C  D  +  +LL  C K  +    +  ++ 
Sbjct: 850 PRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRGKRAADK 909

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           L++L+P +  +YV LS+ YA S  W+    +R  MK KG++K PG SWI+ G +
Sbjct: 910 LMELKPQSSSSYVLLSSIYAESENWSGAVSLRREMKLKGVKKLPGYSWIEPGRD 963



 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 180/587 (30%), Positives = 287/587 (48%), Gaps = 69/587 (11%)

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           T + IH++ LK G        +   +V  Y KC  +D A + F RL  K+VF+W +++ +
Sbjct: 59  TAKVIHSKSLKIG--VGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSM 116

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
               GL    +  FV M    V P+ F    VL AC  L  V FGR VH  V K GF   
Sbjct: 117 YLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFR 176

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            F    LIDMY KC  L +AR VFDG +  + V+W ++I GYV++G   EA++VF  M  
Sbjct: 177 SFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQR 236

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI-INFYSKVGLLE 335
            G  P ++++ ++++A   L     G+ A A  +   +   NV+  ++ I+ ++K G  E
Sbjct: 237 VGHAPDQITLVTVVNAYVAL-----GRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAE 291

Query: 336 DAEVVF-------------------SRMVERDIVTWNLLI-ASYVQSGQSD-VVVASSIV 374
           +A   F                   S +    ++ +  ++ A   + G  D V V S++V
Sbjct: 292 EAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALV 351

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP--- 431
           +MYAKC ++D AKQVFNS+  R++VLWN +L  +A  G + E    F  M+  G  P   
Sbjct: 352 NMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEF 411

Query: 432 --------------------------------NIISWNSVILGFLRNGQMNEAKDMFLQM 459
                                           N+   N+++  + ++G + EA+  F  M
Sbjct: 412 TFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELM 471

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
           +   +  N ++W  +I G  Q    +EA   F+ M+  G+ P   ++   +SAC +V  L
Sbjct: 472 K---IHDN-VSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQEL 527

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
           + G+  H  L++  L   T   +SL+DMY KCG +  A+ VF   PS+ +   NA+I+GY
Sbjct: 528 KRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGY 587

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            M G   EA+ LF+ +Q  G+ P  +TF  +L+ C  A ++N G ++
Sbjct: 588 TM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQI 633



 Score =  232 bits (591), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 193/754 (25%), Positives = 330/754 (43%), Gaps = 141/754 (18%)

Query: 74  NFQIGPE--IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131
           N ++ P    +  +L  C   +D+  G+Q+H  + K G  F    + +  L+  YAKC  
Sbjct: 135 NHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTG--FGFRSFCQGGLIDMYAKCRY 192

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           L  A  +F      +  SW A+I    R G   +A+  F  MQ  G +PD   L  V+ A
Sbjct: 193 LRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNA 252

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
                +V  GR                              L +ARK+F  +   NVVAW
Sbjct: 253 -----YVALGR------------------------------LADARKLFTQIPNPNVVAW 277

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N MI G+ + G  EEAI  F E+   G++ TR S+ S+LSA A+L  L+ G   HA A  
Sbjct: 278 NVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATK 337

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------- 363
            G++ +  +GS+++N Y+K   ++ A+ VF+ + ER+IV WN ++  + Q+G        
Sbjct: 338 EGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEF 397

Query: 364 --------------------------------------------QSDVVVASSIVDMYAK 379
                                                        S++ VA+++VDMYAK
Sbjct: 398 FSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAK 457

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              +  A++ F  + + D V WN ++  Y     + EA  +F +M   G+ P+ +S  S+
Sbjct: 458 SGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASI 517

Query: 440 ILG-----------------------------------FLRNGQMNEAKDMFLQMQSLGV 464
           +                                     +++ G +  A+D+F  M S   
Sbjct: 518 VSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPS--- 574

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
             N+++   LI+G T      EAI  FQE+   G+KP+  T    L  C     L  GR 
Sbjct: 575 -RNVVSVNALIAGYTMGHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQ 632

Query: 525 IHGYLIRHDLCLPTPIV-TSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMH 582
           IHG +++      + +V  SL+ +Y        ++ +F ++   K L V+ A+ISGYA  
Sbjct: 633 IHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQ 692

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
               +AL  +++++   I PD   F ++L AC+    +  G E+   +F       +M+ 
Sbjct: 693 NHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIF---HTGFNMDE 749

Query: 643 FGC--VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
             C  ++++ ++CG++  +L+V   MP   +     S++    K+   E A  I + + Q
Sbjct: 750 VTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQ 809

Query: 701 --LEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
             + PD    ++ + +A + +GR +E  +V D+M
Sbjct: 810 QSIIPDEV-TFLGVLSACSHAGRVSEGRKVFDLM 842



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 207/418 (49%), Gaps = 57/418 (13%)

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L AL   K  H+ ++  G+ L  +LG+ I++ Y K G ++ A+  FSR+ ++D+  WN +
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 356 IASYVQSGQSDVVVAS-------------------------------------------- 371
           ++ Y+  G    VV S                                            
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGF 173

Query: 372 --------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
                    ++DMYAKC  + +A+ VF+  +  D V W  L+A Y   G   EA ++F +
Sbjct: 174 GFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDR 233

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           MQ  G +P+ I+  +V+  ++  G++ +A+ +F Q+ +    PN++ W  +ISG  +   
Sbjct: 234 MQRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPN----PNVVAWNVMISGHAKRGF 289

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
             EAI FF E+ +TG+K + +++   LSA   ++ L  G  +H    +  L     + ++
Sbjct: 290 AEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSA 349

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           LV+MYAKC  +  AK+VF+    + + ++NAM+ G+A +GLA E +  F  +++ G  PD
Sbjct: 350 LVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPD 409

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
             TFT+I +AC+    +N G +L   M  + +   ++     +V++ ++ G L EA +
Sbjct: 410 EFTFTSIFSACASLHYLNFGGQLHTVMIKN-KFASNLFVANALVDMYAKSGALKEARK 466



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 9/208 (4%)

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           +L   + IH   ++  + L   +   +VD+Y KCGN+  A++ F     K++  +N+++S
Sbjct: 56  ALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLS 115

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
            Y  HGL    +  F  +    + P+  TF  +L+ACS    VN G ++  G+F   +  
Sbjct: 116 MYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVF---KTG 172

Query: 638 PSMEHF--GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
                F  G ++++ ++C  L +A R++     + D     +L++  V+      A  + 
Sbjct: 173 FGFRSFCQGGLIDMYAKCRYLRDA-RLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVF 231

Query: 696 EHLLQL--EPDNPGNYVALSNAYAASGR 721
           + + ++   PD     V + NAY A GR
Sbjct: 232 DRMQRVGHAPDQI-TLVTVVNAYVALGR 258


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/766 (29%), Positives = 386/766 (50%), Gaps = 93/766 (12%)

Query: 101  IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
            + +R+ K G   A ++     ++   A    L  A  L  R+++ +  +W A+I    + 
Sbjct: 248  LFSRMEKMGS--APDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQS 305

Query: 161  GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
            GL  +    + +M+  G+ P      ++L A  ++     G+ +H   +K G D  VFV 
Sbjct: 306  GLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVG 365

Query: 221  SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
            SSLI++Y K G + +A+KVFD    +N+V WN+M+ G+VQN L EE I++F  M    +E
Sbjct: 366  SSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLE 425

Query: 281  PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
                +  S+L A  NLD+LD G+Q H + + N M+ D  + +++++ YSK+G ++ A+ +
Sbjct: 426  ADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKAL 485

Query: 341  FSRMVERDIVTWNLLI-----------ASYV----------------------------- 360
            FS +  +D V+WN LI           A Y+                             
Sbjct: 486  FSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRAT 545

Query: 361  QSGQ------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
            ++G+            S+  V SS++D+Y+K   ++++++V   +    +V  N L+   
Sbjct: 546  ETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGL 605

Query: 409  ADLGRSGEASRLFYQMQLEGISPNIISWNSVILG----------------FLRNGQMNEA 452
                R  EA  LF Q+  +G  P+  ++ S++ G                 L++  +N+ 
Sbjct: 606  VQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQ- 664

Query: 453  KDMFLQMQSLGV-------------------QPNLITWTTLISGLTQNSCGNEAILFFQE 493
             D  L +  +G+                     NL+ WT  ISG  QN   +++++ F  
Sbjct: 665  -DTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWR 723

Query: 494  MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
            M    ++    T    L AC+++A+L +G+ IHG +I+          ++L+DMY+KCG+
Sbjct: 724  MRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMYSKCGD 783

Query: 554  IHQAKRVF-DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
            +  +  +F ++   + +  +N+MI G+A +G A EAL LF+ +Q+  + PD +T   +L 
Sbjct: 784  VISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTLLGVLI 843

Query: 613  ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
            ACSHAGL++EG  LF  M   + + P ++H+ C+++LL R G+L EA  VI  +P   D 
Sbjct: 844  ACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQLPFRADG 903

Query: 673  HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
             I  + L+ C    + E  +  ++ L+++EP     YV LS+ +AA+G W E    R+ M
Sbjct: 904  VIWATFLAACQMHKDEERGKVAAKKLVEMEPQRSSTYVFLSSLHAAAGNWVEAKVAREAM 963

Query: 733  KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL-ALLGM 777
            +EKG+ K PGCSWI +G + ++FV  D  HP T  IY  L  L GM
Sbjct: 964  REKGVMKFPGCSWITVGNKTNLFVVQDTHHPDTLGIYKMLDDLTGM 1009



 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 204/789 (25%), Positives = 352/789 (44%), Gaps = 158/789 (20%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIG--PEIYG--ELLQGCVYKRDMYTGQQIHARIL 106
           +S  ++    R+ +D    ++C    IG  P+ +G   +L  C     +  G+Q+H  +L
Sbjct: 131 LSCHARSGSPRDVLDAFQRLRC---SIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVL 187

Query: 107 KNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA 166
           K+G  F  + + +  LV  YAKC  +  A R+F  +   +   WA++I    RVG  ++A
Sbjct: 188 KSG--FCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQA 245

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
           L  F  M++ G +PD                                   V + S+L  M
Sbjct: 246 LALFSRMEKMGSAPDQVTY-------------------------------VTIISTLASM 274

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
               G L +AR +   +   + VAWN++I  Y Q+GL  E   ++ +M  +G+ PTR + 
Sbjct: 275 ----GRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTF 330

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE 346
            S+LSA+A++ A DEG+Q HA AV +G++ +  +GSS+IN Y K G + DA+ VF    E
Sbjct: 331 ASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTE 390

Query: 347 RDIVTWNLLIASYVQ--------------------------------------------- 361
           ++IV WN ++  +VQ                                             
Sbjct: 391 KNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQV 450

Query: 362 -------SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
                  S  +D+ VA++++DMY+K   ID AK +F+ I  +D V WN L+   A     
Sbjct: 451 HCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEE 510

Query: 415 GEASRLFYQMQLEGISPNIISW-----------------------------------NSV 439
            EA  +  +M+  GI+P+ +S+                                   +S+
Sbjct: 511 EEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSL 570

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           I  + + G +  ++ +   + +     +++    LI+GL QN+  +EAI  FQ++L+ G 
Sbjct: 571 IDLYSKFGDVESSRKVLAHVDA----SSMVPINALITGLVQNNREDEAIELFQQVLKDGF 626

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC-LPTPIVTSLVDMYAKCGNIHQAK 558
           KPS  T    LS CT   S   G+ +H Y ++  L    T +  SLV +Y KC  +  A 
Sbjct: 627 KPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDAN 686

Query: 559 RVF-DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           ++  ++   K L  + A ISGYA +G + ++L +F  ++   +  D  TF ++L ACS  
Sbjct: 687 KLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEI 746

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
             + +G E+  G+               ++++ S+CG++  +  +   +    +     S
Sbjct: 747 AALTDGKEIH-GLIIKSGFVSYETAASALMDMYSKCGDVISSFEIFKELKNKQNIMPWNS 805

Query: 678 LLSTCVKSNETELAEYISEHLL--------QLEPDNP---GNYVALSNA-YAASGR--WN 723
           ++    K+       Y +E LL        QL+PD     G  +A S+A   + GR  ++
Sbjct: 806 MIVGFAKNG------YANEALLLFQKMQESQLKPDEVTLLGVLIACSHAGLISEGRNLFD 859

Query: 724 EVSQVRDIM 732
            +SQV  I+
Sbjct: 860 SMSQVYGIV 868



 Score =  207 bits (526), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 147/572 (25%), Positives = 275/572 (48%), Gaps = 65/572 (11%)

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF--CRLRVKNVFSWAAIIGLNC 158
           +HAR+L+ G        +   LV  Y +   +  A R    C     +  + ++++  + 
Sbjct: 78  LHARVLRLG--LPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLSCHA 135

Query: 159 RVGLSEKALIGFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
           R G     L  F  ++   G +PD F L  VL AC  LG +  GR VH  VLK GF    
Sbjct: 136 RSGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSA 195

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           F  + L+DMY KC ++++AR+VFDG+   + + W SMI GY + G  ++A+ +F  M   
Sbjct: 196 FCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKM 255

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLED 336
           G  P +V+  +I+S  A++     G+ + A  ++  +++ + +  +++I+ YS+ GL  +
Sbjct: 256 GSAPDQVTYVTIISTLASM-----GRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESE 310

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQS---------------------DVVVASSIVD 375
              ++  M  + ++      AS + +  S                     +V V SS+++
Sbjct: 311 VFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLIN 370

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
           +Y K   I +AK+VF+    +++V+WN +L  +       E  ++F  M+   +  +  +
Sbjct: 371 LYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFT 430

Query: 436 WNSVI-----LGFLRNGQM-----------------NEAKDMFLQMQSLGVQPNL----- 468
           + SV+     L  L  G+                  N   DM+ ++ ++ V   L     
Sbjct: 431 FVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIP 490

Query: 469 ----ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
               ++W  LI GL  N    EA+   + M   GI P   +   A++AC+++ +   G+ 
Sbjct: 491 GKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQ 550

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMHG 583
           IH   I++++C    + +SL+D+Y+K G++  +++V   +  S  +P+ NA+I+G   + 
Sbjct: 551 IHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPI-NALITGLVQNN 609

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACS 615
              EA+ LF+ + + G  P + TF +IL+ C+
Sbjct: 610 REDEAIELFQQVLKDGFKPSNFTFASILSGCT 641



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 200/428 (46%), Gaps = 65/428 (15%)

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV 249
           +ACG L         H  VL++G      +  +L+D+YG+ G +  A +           
Sbjct: 73  RACGVL---------HARVLRLGLPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPAS 123

Query: 250 AWNSMIV--GYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAH 306
              +  V   + ++G   + +  F  +    G  P +  +  +LSA + L AL++G+Q H
Sbjct: 124 GAAASSVLSCHARSGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVH 183

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
                                                    D++      +++ Q+G   
Sbjct: 184 C----------------------------------------DVLKSGFCSSAFCQAG--- 200

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                 +VDMYAKC  + +A++VF+ I   D + W +++A Y  +GR  +A  LF +M+ 
Sbjct: 201 ------LVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEK 254

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
            G +P+ +++ ++I      G++++A+ +  ++Q     P+ + W  +IS  +Q+   +E
Sbjct: 255 MGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQ----MPSTVAWNAVISSYSQSGLESE 310

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
               +++M   G+ P+ +T    LSA   + +   G+ IH   ++H L     + +SL++
Sbjct: 311 VFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLIN 370

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           +Y K G I  AK+VFD S  K + ++NAM+ G+  + L  E + +F+ +++  ++ D  T
Sbjct: 371 LYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFT 430

Query: 607 FTNILNAC 614
           F ++L AC
Sbjct: 431 FVSVLGAC 438


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/571 (34%), Positives = 329/571 (57%), Gaps = 30/571 (5%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           ++  Y K G+L  AR +F+ M  ++VV+WN+M+ G+ QNG  EEA ++F +M ++     
Sbjct: 128 MLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVK----N 183

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
            +S   +LSA      +++ ++       + M+ + V  + ++  Y +   L+DA  +F 
Sbjct: 184 EISWNGLLSAYVQNGRIEDARRLFD----SKMDWEIVSWNCLMGGYVRKKRLDDARSLFD 239

Query: 343 RMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQV 389
           RM  RD ++WN++I  Y Q+G               DV   +++V  + +   +D A ++
Sbjct: 240 RMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRI 299

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F  +  ++ V WN ++A Y    +  +A  LF QM     S N  SWN+++ G+ + G +
Sbjct: 300 FEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMP----SRNTSSWNTMVTGYAQCGNI 355

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           ++AK +F +M     Q + I+W  +ISG  Q+    EA+  F +M   G   + + + CA
Sbjct: 356 DQAKILFDEMP----QRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACA 411

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           LS+C ++A+L  G+ +HG L++           +L+ MY KCG+I +A  VF+    K++
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +N MI+GYA HG   EALALF++++   I PD +T   +L+ACSH G V++G+E F  
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNS 530

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M+ ++ +  + +H+ C+++LL R G LDEAL ++ +MP  PDA   G+LL       +TE
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTE 590

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           L E  +E + ++EPDN G YV LSN YAASGRW EV ++R  M++KG++K PG SW++I 
Sbjct: 591 LGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQ 650

Query: 750 EELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            + H+F   D SHP+ E IYA L  L + ++
Sbjct: 651 NKTHIFTVGDCSHPEAERIYAYLEELDLELK 681



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 139/609 (22%), Positives = 256/609 (42%), Gaps = 120/609 (19%)

Query: 31  TKLRESDNSYESLYKS----YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELL 86
           T+  ES NS  ++  S    +  +IS+  ++ Q   A+ +   M+ R+       Y  ++
Sbjct: 43  TQKLESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRS----TVTYNAMI 98

Query: 87  QGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN 146
            G +        +++  + + + D  + N      ++  Y K   L  A  LF ++  K+
Sbjct: 99  SGYLSNNKFDCARKVFEK-MPDRDLISWN-----VMLSGYVKNGNLSAARALFNQMPEKD 152

Query: 147 VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL-GWVGFGRAVH 205
           V SW A++    + G  E+A   F          D  ++ N +   G L  +V  GR   
Sbjct: 153 VVSWNAMLSGFAQNGFVEEARKIF----------DQMLVKNEISWNGLLSAYVQNGRIED 202

Query: 206 GYVL-KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
              L     D  +   + L+  Y +   L++AR +FD M  R+ ++WN MI GY QNGL 
Sbjct: 203 ARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLL 262

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
            EA R+F E+      P R                                 D    +++
Sbjct: 263 SEARRLFEEL------PIR---------------------------------DVFAWTAM 283

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVAS 371
           ++ + + G+L++A  +F  M E++ V+WN +IA YVQS Q              +    +
Sbjct: 284 VSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWN 343

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE---- 427
           ++V  YA+C  ID AK +F+ +  RD + W  +++ YA  G+S EA  LF +M+ +    
Sbjct: 344 TMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGIL 403

Query: 428 -------------------------------GISPNIISWNSVILGFLRNGQMNEAKDMF 456
                                          G     I+ N+++  + + G + EA D+F
Sbjct: 404 NRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVF 463

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
             +     + ++++W T+I+G  ++  G EA+  F+ M  T IKP   T+   LSAC+  
Sbjct: 464 EDI----TEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHT 518

Query: 517 ASLRNGRAIHGYLIR-HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNA 574
             +  G      + + + +       T ++D+  + G + +A  +    P   +   + A
Sbjct: 519 GFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGA 578

Query: 575 MISGYAMHG 583
           ++    +HG
Sbjct: 579 LLGASRIHG 587



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 138/257 (53%), Gaps = 3/257 (1%)

Query: 113 ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
           +RN      +V  YA+C  +D A  LF  +  ++  SWAA+I    + G SE+AL  F++
Sbjct: 336 SRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIK 395

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M+ DG   +   L   L +C  +  +  G+ +HG ++K GF       ++L+ MYGKCG 
Sbjct: 396 MKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGS 455

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           +EEA  VF+ +  +++V+WN+MI GY ++G  +EA+ +F  M +  ++P  V++  +LSA
Sbjct: 456 IEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSA 514

Query: 293 SANLDALDEGKQAHAVAVIN-GMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIV 350
            ++   +D+G +       N G+  +    + +I+   + G L++A  +   M    D  
Sbjct: 515 CSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAA 574

Query: 351 TWNLLIASYVQSGQSDV 367
           TW  L+ +    G +++
Sbjct: 575 TWGALLGASRIHGDTEL 591



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 175/366 (47%), Gaps = 39/366 (10%)

Query: 342 SRMVERDIVTWNLLIASYVQSGQSD-------------VVVASSIVDMYAKCERIDNAKQ 388
           S +V+ DIV WN  I++Y++ GQ +              V  ++++  Y    + D A++
Sbjct: 53  STIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARK 112

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           VF  +  RD++ WN +L+ Y   G    A  LF QM       +++SWN+++ GF +NG 
Sbjct: 113 VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQNGF 168

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           + EA+ +F QM    +  N I+W  L+S   QN    +A   F   ++  I     +  C
Sbjct: 169 VEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEI----VSWNC 220

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            +        L + R++   +   D      ++T     YA+ G + +A+R+F+  P ++
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITG----YAQNGLLSEARRLFEELPIRD 276

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           +  + AM+SG+  +G+  EA  +F+ + +K    + +++  ++     +  + +  ELF 
Sbjct: 277 VFAWTAMVSGFVQNGMLDEATRIFEEMPEK----NEVSWNAMIAGYVQSQQIEKARELF- 331

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
               D     +   +  +V   ++CGN+D+A  +   MP   D     +++S   +S ++
Sbjct: 332 ----DQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMP-QRDCISWAAMISGYAQSGQS 386

Query: 689 ELAEYI 694
           E A ++
Sbjct: 387 EEALHL 392


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/537 (35%), Positives = 317/537 (59%), Gaps = 23/537 (4%)

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           N+V+W+++I G+ QNG ++EA+ +   M   G EP   ++ S+L A A L  L+ GK+ H
Sbjct: 10  NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIH 69

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
                +G   +  + + +++ Y +   +  A  +FS    +++V++N +I  Y ++G   
Sbjct: 70  GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGN-- 127

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIIL--RDVVLWNTLLAAYADLGRSGEASRLFYQM 424
                           ++ AK++F+ + L  +D + WN++++ YAD     E  +   Q+
Sbjct: 128 ----------------VEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAA-QL 170

Query: 425 QLEGISP-NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
             +G++  +  +WN +I G+    Q+   +++  +M+  G +PN+ TW  +ISG  +N  
Sbjct: 171 AFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGH 230

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
              A+  F EM  + ++P   T+   L AC  +A++  G+ +H + IR    L   I  +
Sbjct: 231 NELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAA 290

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           LVDMYAKCG+I  A +V++   +  L   NAM++ YAMHG   E +ALF+N+   G  PD
Sbjct: 291 LVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPD 350

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            +TF ++L++C HAG V  G E F  + + + V PS++H+ C+V+LLSR G LDEA  ++
Sbjct: 351 HVTFLSVLSSCVHAGAVETGHEFF-DLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELV 409

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             +P  PD+ + G+LL  CV     EL E  +E L++LEP+N GNYV L+N YA +GRW+
Sbjct: 410 KKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWH 469

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           ++ + R ++K++G+ K+PGCSWI+  E++HVF++CD+SH KTE+IY TL  L  H+R
Sbjct: 470 DLDRTRQMIKDRGMHKSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMR 526



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/473 (27%), Positives = 212/473 (44%), Gaps = 66/473 (13%)

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           N+ SW+A+IG   + G  ++AL     MQ  G  P+   L +VL AC  L  +  G+ +H
Sbjct: 10  NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIH 69

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
           GYV + GF    FV + L+D+Y +C D+  A K+F G   +NVV++N+MIVGY +NG  E
Sbjct: 70  GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVE 129

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           +A  +F +M L G +   +S  S++S  A+     E  +A  +A     E D    + +I
Sbjct: 130 KAKELFDQMELVGKDT--ISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLI 187

Query: 326 NFYSKVGLLEDAEVVFSRM----VERDIVTWNLLIASYVQSGQS---------------- 365
           + Y+    LE+ + +  +M     E ++ TWN +I+ +V++G +                
Sbjct: 188 SGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLR 247

Query: 366 ------------------------------------DVVVASSIVDMYAKCERIDNAKQV 389
                                               DV + +++VDMYAKC  I +A QV
Sbjct: 248 PDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQV 307

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           +N I   ++V  N +L AYA  G   E   LF  M   G  P+ +++ SV+   +  G +
Sbjct: 308 YNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAV 367

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
               + F  M    V P+L  +T ++  L++    +EA    +++     KP +      
Sbjct: 368 ETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPR---KPDSVMWGAL 424

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLP--TPIVTSLVDMYAKCGNIHQAKRV 560
           L  C    ++  G      LI  +   P  T     L ++YA  G  H   R 
Sbjct: 425 LGGCVIWGNVELGEIAAESLIELE---PNNTGNYVLLANLYAYAGRWHDLDRT 474



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 213/456 (46%), Gaps = 46/456 (10%)

Query: 36  SDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDM 95
           S+NS  +L  S+   I   ++    +EA++LL  M+   F+        +L  C   +++
Sbjct: 4   SENSKPNLV-SWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNL 62

Query: 96  YTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
             G++IH  + ++G  F  N +V   LV  Y +C  +  A ++F    VKNV S+  +I 
Sbjct: 63  NLGKEIHGYVTRHG--FMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIV 120

Query: 156 LNCRVGLSEKALIGFVEMQ---EDGVSPDNFV---LPNVLKACGALGWVGFGRAVHGYVL 209
             C  G  EKA   F +M+   +D +S ++ +     N+LK C  L              
Sbjct: 121 GYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLK-CEDLK-----------AA 168

Query: 210 KVGFDGCVFVASS----LIDMYGKCGDLEEARKVFDGM----IARNVVAWNSMIVGYVQN 261
           ++ FDG     ++    LI  Y  C  LE  + +   M       NV  WN +I G+V+N
Sbjct: 169 QLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVEN 228

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G NE A+R+F EM    + P   +V  IL A A L  +  GKQ HA ++  G ELD  +G
Sbjct: 229 GHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIG 288

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +++++ Y+K G ++ A  V++R+   ++V+ N ++ +Y   G  D              E
Sbjct: 289 AALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGD--------------E 334

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            I   + +  +    D V + ++L++    G        F  M    ++P++  +  ++ 
Sbjct: 335 GIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVD 394

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
              R G+++EA ++   ++ +  +P+ + W  L+ G
Sbjct: 395 LLSRAGRLDEAYEL---VKKIPRKPDSVMWGALLGG 427



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
           +PNL++W+ +I G  QN    EA+     M   G +P+  T+   L AC  + +L  G+ 
Sbjct: 8   KPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKE 67

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           IHGY+ RH       +V  LVD+Y +C ++  A ++F     K +  YN MI GY  +G 
Sbjct: 68  IHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGN 127

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG 644
             +A  LF  ++  G   D+I++ ++++  +   L  E L+     F D   +     + 
Sbjct: 128 VEKAKELFDQMELVG--KDTISWNSMISGYADNLLKCEDLKAAQLAF-DGVTERDTATWN 184

Query: 645 CVVNLLSRCGNLDEALRVILTMPCD---PDAHIIGSLLSTCVKSNETELA 691
            +++  + C  L+    +I  M  D   P+ +    ++S  V++   ELA
Sbjct: 185 VLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELA 234



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 115/249 (46%), Gaps = 13/249 (5%)

Query: 63  AVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           A+ L TEM+  + +  P+IY  G +L  C     +  G+Q+HA  ++ G  +  + ++  
Sbjct: 234 ALRLFTEMQTSSLR--PDIYTVGIILPACARLATIARGKQVHAHSIRQG--YELDVHIGA 289

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            LV  YAKC ++  A +++ R+   N+ S  A++      G  ++ +  F  M  +G  P
Sbjct: 290 ALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRP 349

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D+    +VL +C   G V  G      +        +   + ++D+  + G L+EA ++ 
Sbjct: 350 DHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELV 409

Query: 241 DGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR----VSVTSILSASAN 295
             +  + + V W +++ G V  G N E   +  E  +E +EP      V + ++ + +  
Sbjct: 410 KKIPRKPDSVMWGALLGGCVIWG-NVELGEIAAESLIE-LEPNNTGNYVLLANLYAYAGR 467

Query: 296 LDALDEGKQ 304
              LD  +Q
Sbjct: 468 WHDLDRTRQ 476


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 235/815 (28%), Positives = 393/815 (48%), Gaps = 110/815 (13%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           +I +L ++ +  +A++L ++            +  LL+ C    ++Y G+ IHA I+  G
Sbjct: 26  KIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMG 85

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLF-----CRLRVKNVFSWAAIIGLNCRVGLSE 164
                + Y+ T L+  Y KC  L  A ++F      R    ++  W  +I    + G  E
Sbjct: 86  --LQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFE 143

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
           + L  F  MQE                   L W   GR +HGY+++  F+G  ++ ++LI
Sbjct: 144 EGLAQFCRMQE-------------------LSWYMAGRQIHGYIIRNMFEGDPYLETALI 184

Query: 225 DMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
            MY  C    EA  +F  +  R N+VAWN MI G+V+NG+ E+++ ++     E  +   
Sbjct: 185 GMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVS 244

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            S T   +A ++ + LD G+Q H   +    + D  + +S++  Y+K G +EDA+ VF +
Sbjct: 245 ASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQ 304

Query: 344 MVERDIVTWNLLIASYVQSG---------------------------------------- 363
           ++++++   N +I++++ +G                                        
Sbjct: 305 VLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFG 364

Query: 364 ------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
                       QS+V + S+++ MY KC   ++A  VF ++  RDVV W +++A +   
Sbjct: 365 RTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQN 424

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVI----------LGFLRNG---QMNEAKDMFLQ 458
            R  +A  LF  M+ EG+  +     SVI          LG L +G   +     D+F+ 
Sbjct: 425 RRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVA 484

Query: 459 MQSLGV------------------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
              + +                    NL+ W ++IS  + N     +I    ++L+ G  
Sbjct: 485 CSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFY 544

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
             + +IT  L A + VA+L  G+ +H Y IR  +     +  +L+DMY KCG +  A+ +
Sbjct: 545 LDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLI 604

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F+  P + L  +N+MI+GY  HG   EA+ LFK +++    PD +TF  ++ +CSH+G+V
Sbjct: 605 FENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMV 664

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EGL LF  M  ++ V+P MEH+  VV+LL R G LD+A   I  MP D D  +   LL 
Sbjct: 665 EEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLF 724

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C      EL E ++++LL++EP    NYV L N Y     W+  + +R  MK +GL+K+
Sbjct: 725 ACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKS 784

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           PGCSWI++   + VF + D S  +  EIY TL+ L
Sbjct: 785 PGCSWIEVKNRVDVFFSGDSSSTRRIEIYKTLSSL 819



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 199/445 (44%), Gaps = 65/445 (14%)

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           NS I   VQ G   +A+ +  +     +   + +  S+L   A+L  L  G+  HA  V 
Sbjct: 24  NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVT 83

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER-----DIVTWNLLIASYVQSGQSD 366
            G++ D  + +S+IN Y K GLL  A  VF +M E      DI  WN +I  Y + G  +
Sbjct: 84  MGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFE 143

Query: 367 VVVASSIVDMYAKCERID---NAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASR 419
             +A      + + + +      +Q+   II      D  L   L+  Y+   R  EA  
Sbjct: 144 EGLAQ-----FCRMQELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWS 198

Query: 420 LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           LF +++      NI++WN +I GF+ NG   ++    L++ SL    N            
Sbjct: 199 LFGKLENR---SNIVAWNVMIGGFVENGMWEKS----LELYSLAKNEN------------ 239

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
                               K  + + T A +AC+    L  GR +H  +I+ +      
Sbjct: 240 -------------------CKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPY 280

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           + TSL+ MYAK G++  AK+VFD    KE+ + NAMIS +  +G A +AL L+  ++   
Sbjct: 281 VCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGE 340

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF----GCVVNLLSRCGN 655
              DS T +++L+ CS  G  + G  +   +     +K SM+        ++ +  +CG+
Sbjct: 341 TPVDSFTISSLLSGCSVVGSYDFGRTVHAEV-----IKRSMQSNVAIQSALLTMYYKCGS 395

Query: 656 LDEALRVILTMPCDPDAHIIGSLLS 680
            ++A  V  TM  + D    GS+++
Sbjct: 396 TEDADSVFYTMK-ERDVVAWGSMIA 419



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 8/147 (5%)

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F  ++   V P++    + I  L Q    ++A+    +   + +  +  T    L  C  
Sbjct: 11  FYSLRQTEVSPSI---NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCAS 67

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKE----LP 570
           +++L +GR IH  ++   L     I TSL++MY KCG +  A +VFD +S S++    + 
Sbjct: 68  LSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDIT 127

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQ 597
           V+N +I GY  +G   E LA F  +Q+
Sbjct: 128 VWNPVIDGYFKYGHFEEGLAQFCRMQE 154


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/758 (30%), Positives = 378/758 (49%), Gaps = 103/758 (13%)

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
           K++  Y+K + +  A+  F  + V++V SW +++    + G S K++  FV+M  +G+  
Sbjct: 119 KMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEF 178

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D      +LK C  L     G  +HG V++VG D  V  AS+L+DMY K     E+ +VF
Sbjct: 179 DGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVF 238

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
            G+  +N V+W+++I G VQN L   A++ F EM       ++    S+L + A L  L 
Sbjct: 239 QGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELR 298

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G Q HA A+ +    D ++ ++ ++ Y+K   ++DA+++F      +  ++N +I  Y 
Sbjct: 299 LGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYS 358

Query: 361 Q------------------------------------SGQSD------VVVASSI----- 373
           Q                                     G S+      + + SS+     
Sbjct: 359 QEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVC 418

Query: 374 -----VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
                +DMY KC+ +  A +VF+ +  RD V WN ++AA+   G+  E   LF  M    
Sbjct: 419 VANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR 478

Query: 429 ISPNIISWNSVI-------LG---------------------------FLRNGQMNEAKD 454
           I P+  ++ S++       LG                           + + G + EA+ 
Sbjct: 479 IEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEK 538

Query: 455 M---FLQ-------------MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +   F Q             M +  +Q   ++W ++ISG        +A + F  M+E G
Sbjct: 539 IHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMG 598

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           I P   T    L  C ++AS   G+ IH  +I+ +L     I ++LVDMY+KCG++H ++
Sbjct: 599 ITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSR 658

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
            +F+ S  ++   +NAMI GYA HG   EA+ LF+ +  + I P+ +TF +IL AC+H G
Sbjct: 659 LMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 718

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           L+++GLE F  M  D+ + P + H+  +V++L + G +  AL +I  MP + D  I  +L
Sbjct: 719 LIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL 778

Query: 679 LSTC-VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           L  C +  N  E+AE  +  LL+L+P +   Y  LSN YA +G W +VS +R  M+   L
Sbjct: 779 LGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKL 838

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           +K PGCSW+++ +ELHVF+  D++HP+ EEIY  L L+
Sbjct: 839 KKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLI 876



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/527 (26%), Positives = 248/527 (47%), Gaps = 67/527 (12%)

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL---------- 223
           Q + VS  NF    V K C   G +  G+  H +++  GF    FV + L          
Sbjct: 42  QVNSVSTTNFSF--VFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDF 99

Query: 224 ---------------------IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
                                I+ Y K  D+ +A   F+ M  R+VV+WNSM+ GY+QNG
Sbjct: 100 VSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNG 159

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
            + ++I VF +M  EG+E    +   IL   + L+    G Q H + V  G + D V  S
Sbjct: 160 ESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAAS 219

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
           ++++ Y+K     ++  VF  + E++ V+W+ +IA  VQ+      + S  +  + + ++
Sbjct: 220 ALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNN-----LLSLALKFFKEMQK 274

Query: 383 ID-NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           ++    Q   + +LR         AA ++L   G+   L         + + I   + + 
Sbjct: 275 VNAGVSQSIYASVLRSC-------AALSELRLGGQ---LHAHALKSDFAADGIVRTATLD 324

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
            + +   M +A+ +F   ++L  Q    ++  +I+G +Q   G +A+L F  ++ +G+  
Sbjct: 325 MYAKCDNMQDAQILFDNSENLNRQ----SYNAMITGYSQEEHGFKALLLFHRLMSSGLGF 380

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
              +++    AC  V  L  G  I+G  I+  L L   +  + +DMY KC  + +A RVF
Sbjct: 381 DEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVF 440

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           D    ++   +NA+I+ +  +G   E L LF ++ +  I+PD  TF +IL AC+  G + 
Sbjct: 441 DEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLG 499

Query: 622 EGLELF-----VGMFSDHQVKPSMEHFGC-VVNLLSRCGNLDEALRV 662
            G+E+       GM S+  V       GC ++++ S+CG ++EA ++
Sbjct: 500 YGMEIHSSIVKSGMASNSSV-------GCSLIDMYSKCGMIEEAEKI 539



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 101/238 (42%), Gaps = 43/238 (18%)

Query: 490 FFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
           +F + L      STT  +     C    +L  G+  H ++I       T ++  L+ +Y 
Sbjct: 35  YFTDFLNQVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYT 94

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYA----------------------------- 580
              +   A  VFD  P +++  +N MI+GY+                             
Sbjct: 95  NSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSG 154

Query: 581 --MHGLAVEALALFKNLQQKGIDPDSITFTNILNACS-----HAGLVNEGLELFVGMFSD 633
              +G +++++ +F ++ ++GI+ D  TF  IL  CS       G+   G+ + VG  +D
Sbjct: 155 YLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTD 214

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
                ++      +++ ++     E+LRV   +P + ++    ++++ CV++N   LA
Sbjct: 215 VVAASAL------LDMYAKGKRFVESLRVFQGIP-EKNSVSWSAIIAGCVQNNLLSLA 265


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/562 (34%), Positives = 320/562 (56%), Gaps = 29/562 (5%)

Query: 232 DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
           +L  AR +FD M  R+VV+WN+M+ GY QNG  +EA  +F EM  +      +S   +L+
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLA 100

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           A      +++ ++          + + +  + ++  Y K   L DA  +F RM ERD V+
Sbjct: 101 AYVQNGRIEDARRLFESKA----DWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS 156

Query: 352 WNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
           WN +I+ Y Q+G+              DV   +++V  Y +   +D A++VF+ +  ++ 
Sbjct: 157 WNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS 216

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
           V WN ++A Y    R  +A  LF  M  +    N+ SWN++I G+ +NG + +A++ F +
Sbjct: 217 VSWNAIIAGYVQCKRMDQARELFEAMPCQ----NVSSWNTMITGYAQNGDIAQARNFFDR 272

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           M     Q + I+W  +I+G  Q+  G EA+  F EM   G + + +T T  LS C ++A+
Sbjct: 273 MP----QRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAA 328

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           L  G+ +HG +++  L     +  +L+ MY KCGNI  A  VF+    KE+  +N MI+G
Sbjct: 329 LELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAG 388

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           YA HG   EAL LF+++++ GI PD +T   +L+ACSH GLV++G E F  M  D+ +  
Sbjct: 389 YARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITA 448

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
           + +H+ C+++LL R G LD+A  ++  MP +PDA   G+LL        TEL E  ++ +
Sbjct: 449 NSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMI 508

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
            ++EPDN G YV LSN YAASGRW +V ++R  M+++G++K PG SW+++  ++H F   
Sbjct: 509 FEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVG 568

Query: 759 DRSHPKTEEIYATLALLGMHVR 780
           D  HP+ + IY  L  L + ++
Sbjct: 569 DSVHPERDRIYTFLEELDLKMK 590



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 136/510 (26%), Positives = 235/510 (46%), Gaps = 68/510 (13%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYK--RDMYTGQQIHA 103
           S+   +S  ++   ++EA ++  EM C+N      +    +Q    +  R ++  +    
Sbjct: 63  SWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWE 122

Query: 104 RILKN---GDFFARNEYVETK----------------LVVFYAKCDALDVASRLFCRLRV 144
            I  N   G +  RN  V+ +                ++  YA+   L  A RLF    V
Sbjct: 123 LISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPV 182

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++VF+W A++    + G+ ++A   F     DG+   N V  N + A    G+V   R  
Sbjct: 183 RDVFTWTAMVSGYVQNGMLDEARRVF-----DGMPEKNSVSWNAIIA----GYVQCKRMD 233

Query: 205 HGYVLKVGFDG--CVFVAS--SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
               L   F+   C  V+S  ++I  Y + GD+ +AR  FD M  R+ ++W ++I GY Q
Sbjct: 234 QAREL---FEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQ 290

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +G  EEA+ +F EM  +G    R + TS LS  A + AL+ GKQ H   V  G+E    +
Sbjct: 291 SGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYV 350

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G++++  Y K G ++DA +VF  + E+++V+WN +IA Y + G             + K 
Sbjct: 351 GNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHG-------------FGK- 396

Query: 381 ERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIIS 435
                A  +F S+    IL D V    +L+A +  G   + +  FY M Q  GI+ N   
Sbjct: 397 ----EALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 452

Query: 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL-----ISGLTQNSCGNEAILF 490
           +  +I    R G++++A+++   M+++  +P+  TW  L     I G T+       ++F
Sbjct: 453 YTCMIDLLGRAGRLDDAQNL---MKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIF 509

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLR 520
             E   +G+    + +  A     DV  +R
Sbjct: 510 EMEPDNSGMYVLLSNLYAASGRWGDVGRMR 539



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 161/312 (51%), Gaps = 21/312 (6%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++  YA+   +  A   F R+  ++  SWAAII    + G  E+AL  FVEM+ DG   +
Sbjct: 253 MITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLN 312

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
                + L  C  +  +  G+ VHG V+K G +   +V ++L+ MY KCG++++A  VF+
Sbjct: 313 RSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFE 372

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
           G+  + VV+WN+MI GY ++G  +EA+ +F  M   G+ P  V++  +LSA ++   +D+
Sbjct: 373 GIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDK 432

Query: 302 GKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASY 359
           G +  +++    G+  ++   + +I+   + G L+DA+ +   M  E D  TW  L+ + 
Sbjct: 433 GTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGAS 492

Query: 360 VQSGQSDV--VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
              G +++    A  I +M       DN+            VL + L   YA  GR G+ 
Sbjct: 493 RIHGNTELGEKAAKMIFEM-----EPDNSGM---------YVLLSNL---YAASGRWGDV 535

Query: 418 SRLFYQMQLEGI 429
            R+  +M+  G+
Sbjct: 536 GRMRLRMRDRGV 547


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/638 (34%), Positives = 329/638 (51%), Gaps = 67/638 (10%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV------------- 248
           R VH  V+K GF   +F+ + LID Y KCG LE+ R+VFD M  RN+             
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 249 ------------------VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
                               WNSM+ G+ Q+   EEA+  F  M  EG      S  S+L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA + L+ +++G Q H++   +    D  +GS++++ YSK G + DA+ VF  M +R++V
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219

Query: 351 TWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           +WN LI  + Q+G                 + D V  +S++   A    I   ++V   +
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279

Query: 394 I----LR-DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           +    LR D++L N  +  YA   R  EA  +F  M +     N+I+  S+I G+     
Sbjct: 280 VKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR----NVIAETSMISGYAMAAS 335

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
              A+ MF +M     + N+++W  LI+G TQN    EA+  F  +    + P+  +   
Sbjct: 336 TKAARLMFTKM----AERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFAN 391

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTP------IVTSLVDMYAKCGNIHQAKRVFD 562
            L AC D+A L  G   H ++++H     +       +  SL+DMY KCG + +   VF 
Sbjct: 392 ILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR 451

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               ++   +NAMI G+A +G   EAL LF+ + + G  PD IT   +L+AC HAG V E
Sbjct: 452 KMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEE 511

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G   F  M  D  V P  +H+ C+V+LL R G L+EA  +I  MP  PD+ I GSLL+ C
Sbjct: 512 GRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAAC 571

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
                  L +Y++E LL++EP N G YV LSN YA  G+W +V  VR  M+++G+ K PG
Sbjct: 572 KVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPG 631

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           CSWI+I    HVF+  D+SHP+ ++I++ L +L   +R
Sbjct: 632 CSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 149/556 (26%), Positives = 263/556 (47%), Gaps = 93/556 (16%)

Query: 82  YGELLQGCVYKR--DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           + +LL  C+  +   +Y  + +HA ++K+G  F+   +++ +L+  Y+KC +L+   ++F
Sbjct: 22  FAKLLDSCIKSKLSAIYV-RYVHASVIKSG--FSNEIFIQNRLIDAYSKCGSLEDGRQVF 78

Query: 140 CRLRVKNVFSWAAIIGLNCRVGL-------------------------------SEKALI 168
            ++  +N+++W +++    ++G                                 E+AL 
Sbjct: 79  DKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALC 138

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F  M ++G   + +   +VL AC  L  +  G  VH  + K  F   V++ S+L+DMY 
Sbjct: 139 YFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYS 198

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG++ +A++VFD M  RNVV+WNS+I  + QNG   EA+ VF  M    VEP  V++ S
Sbjct: 199 KCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLAS 258

Query: 289 ILSASANLDALDEGKQAHAVAVING-MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           ++SA A+L A+  G++ H   V N  +  D +L ++ ++ Y+K   +++A  +F  M  R
Sbjct: 259 VISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR 318

Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                             +V+  +S++  YA       A+ +F  +  R+VV WN L+A 
Sbjct: 319 ------------------NVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAG 360

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LGF------LRNG---Q 448
           Y   G + EA  LF  ++ E + P   S+ +++          LG       L++G   Q
Sbjct: 361 YTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQ 420

Query: 449 MNEAKDMFLQMQSLG------------------VQPNLITWTTLISGLTQNSCGNEAILF 490
             E  D+F+    +                   ++ + ++W  +I G  QN  GNEA+  
Sbjct: 421 SGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALEL 480

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP-TPIVTSLVDMYA 549
           F+EMLE+G KP   T+   LSAC     +  GR     + R     P     T +VD+  
Sbjct: 481 FREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLG 540

Query: 550 KCGNIHQAKRVFDISP 565
           + G + +AK + +  P
Sbjct: 541 RAGFLEEAKSMIEEMP 556



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 142/493 (28%), Positives = 235/493 (47%), Gaps = 62/493 (12%)

Query: 28  THLTKLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG 83
           T L  L E+D+ + S+ +    ++   +S  ++  +  EA+     M    F +    + 
Sbjct: 97  TKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFA 156

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
            +L  C    DM  G Q+H+ I K+   F  + Y+ + LV  Y+KC  ++ A R+F  + 
Sbjct: 157 SVLSACSGLNDMNKGVQVHSLIAKSP--FLSDVYIGSALVDMYSKCGNVNDAQRVFDEMG 214

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            +NV SW ++I    + G + +AL  F  M E  V PD   L +V+ AC +L  +  G+ 
Sbjct: 215 DRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQE 274

Query: 204 VHGYVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDG-------------------- 242
           VHG V+K       + ++++ +DMY KC  ++EAR +FD                     
Sbjct: 275 VHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAA 334

Query: 243 -----------MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
                      M  RNVV+WN++I GY QNG NEEA+ +F  +  E V PT  S  +IL 
Sbjct: 335 STKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILK 394

Query: 292 ASANLDALDEGKQAHAVAVINGM------ELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           A A+L  L  G QAH   + +G       E D  +G+S+I+ Y K G +E+  +VF +M+
Sbjct: 395 ACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMM 454

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           ERD V+WN +I  + Q+G  +              E ++  +++  S    D +    +L
Sbjct: 455 ERDCVSWNAMIIGFAQNGYGN--------------EALELFREMLESGEKPDHITMIGVL 500

Query: 406 AAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           +A    G   E    F  M  + G++P    +  ++    R G + EAK M  +M    +
Sbjct: 501 SACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMP---M 557

Query: 465 QPNLITWTTLISG 477
           QP+ + W +L++ 
Sbjct: 558 QPDSVIWGSLLAA 570


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/562 (34%), Positives = 320/562 (56%), Gaps = 29/562 (5%)

Query: 232 DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
           +L  AR +FD M  R+VV+WN+M+ GY QNG  +EA  +F EM  +      +S   +L+
Sbjct: 126 NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLA 181

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           A      +++ ++          + + +  + ++  Y K   L DA  +F RM ERD V+
Sbjct: 182 AYVQNGRIEDARRLFESKA----DWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS 237

Query: 352 WNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
           WN +I+ Y Q+G+              DV   +++V  Y +   +D A++VF+ +  ++ 
Sbjct: 238 WNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS 297

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
           V WN ++A Y    R  +A  LF  M  +    N+ SWN++I G+ +NG + +A++ F +
Sbjct: 298 VSWNAIIAGYVQCKRMDQARELFEAMPCQ----NVSSWNTMITGYAQNGDIAQARNFFDR 353

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           M     Q + I+W  +I+G  Q+  G EA+  F EM   G + + +T T  LS C ++A+
Sbjct: 354 MP----QRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAA 409

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           L  G+ +HG +++  L     +  +L+ MY KCGNI  A  VF+    KE+  +N MI+G
Sbjct: 410 LELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAG 469

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           YA HG   EAL LF+++++ GI PD +T   +L+ACSH GLV++G E F  M  D+ +  
Sbjct: 470 YARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITA 529

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
           + +H+ C+++LL R G LD+A  ++  MP +PDA   G+LL        TEL E  ++ +
Sbjct: 530 NSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMI 589

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
            ++EPDN G YV LSN YAASGRW +V ++R  M+++G++K PG SW+++  ++H F   
Sbjct: 590 FEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVG 649

Query: 759 DRSHPKTEEIYATLALLGMHVR 780
           D  HP+ + IY  L  L + ++
Sbjct: 650 DSVHPERDRIYTFLEELDLKMK 671



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 136/510 (26%), Positives = 235/510 (46%), Gaps = 68/510 (13%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYK--RDMYTGQQIHA 103
           S+   +S  ++   ++EA ++  EM C+N      +    +Q    +  R ++  +    
Sbjct: 144 SWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWE 203

Query: 104 RILKN---GDFFARNEYVETK----------------LVVFYAKCDALDVASRLFCRLRV 144
            I  N   G +  RN  V+ +                ++  YA+   L  A RLF    V
Sbjct: 204 LISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPV 263

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++VF+W A++    + G+ ++A   F     DG+   N V  N + A    G+V   R  
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEARRVF-----DGMPEKNSVSWNAIIA----GYVQCKRMD 314

Query: 205 HGYVLKVGFDG--CVFVAS--SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
               L   F+   C  V+S  ++I  Y + GD+ +AR  FD M  R+ ++W ++I GY Q
Sbjct: 315 QAREL---FEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQ 371

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +G  EEA+ +F EM  +G    R + TS LS  A + AL+ GKQ H   V  G+E    +
Sbjct: 372 SGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYV 431

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G++++  Y K G ++DA +VF  + E+++V+WN +IA Y + G             + K 
Sbjct: 432 GNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHG-------------FGK- 477

Query: 381 ERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIIS 435
                A  +F S+    IL D V    +L+A +  G   + +  FY M Q  GI+ N   
Sbjct: 478 ----EALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 533

Query: 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL-----ISGLTQNSCGNEAILF 490
           +  +I    R G++++A+++   M+++  +P+  TW  L     I G T+       ++F
Sbjct: 534 YTCMIDLLGRAGRLDDAQNL---MKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIF 590

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLR 520
             E   +G+    + +  A     DV  +R
Sbjct: 591 EMEPDNSGMYVLLSNLYAASGRWGDVGRMR 620



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 161/312 (51%), Gaps = 21/312 (6%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++  YA+   +  A   F R+  ++  SWAAII    + G  E+AL  FVEM+ DG   +
Sbjct: 334 MITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLN 393

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
                + L  C  +  +  G+ VHG V+K G +   +V ++L+ MY KCG++++A  VF+
Sbjct: 394 RSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFE 453

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
           G+  + VV+WN+MI GY ++G  +EA+ +F  M   G+ P  V++  +LSA ++   +D+
Sbjct: 454 GIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDK 513

Query: 302 GKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASY 359
           G +  +++    G+  ++   + +I+   + G L+DA+ +   M  E D  TW  L+ + 
Sbjct: 514 GTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGAS 573

Query: 360 VQSGQSDV--VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
              G +++    A  I +M       DN+            VL + L   YA  GR G+ 
Sbjct: 574 RIHGNTELGEKAAKMIFEMEP-----DNSGM---------YVLLSNL---YAASGRWGDV 616

Query: 418 SRLFYQMQLEGI 429
            R+  +M+  G+
Sbjct: 617 GRMRLRMRDRGV 628



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 175/395 (44%), Gaps = 62/395 (15%)

Query: 348 DIVTWNLLIASYVQSGQSDVVV--------ASSIV--DMYAKCERIDN---AKQVFNSII 394
           DIV WN+ I +++++GQ D  +         SSI    M + C   D    A+Q+F  + 
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMP 107

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
            RD+V WN +++      R+  A+RL +    E    +++SWN+++ G+ +NG + EAK+
Sbjct: 108 TRDLVSWNVMISGCVRY-RNLRAARLLFDQMPE---RDVVSWNAMLSGYAQNGYVKEAKE 163

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F +M       N I+W  +++   QN    +A    + + E+       +  C +    
Sbjct: 164 IFDEMPC----KNSISWNGMLAAYVQNGRIEDA----RRLFESKADWELISWNCMMGGYV 215

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
               L + R I   +   D      +++     YA+ G + +A+R+F+ SP +++  + A
Sbjct: 216 KRNRLVDARGIFDRMPERDEVSWNTMISG----YAQNGELLEAQRLFEESPVRDVFTWTA 271

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM---- 630
           M+SGY  +G+  EA  +F  + +K    +S+++  I+        +++  ELF  M    
Sbjct: 272 MVSGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAGYVQCKRMDQARELFEAMPCQN 327

Query: 631 ----------------------FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
                                 F D   +     +  ++   ++ G  +EAL + + M  
Sbjct: 328 VSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKR 387

Query: 669 DPD---AHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           D +        S LSTC +    EL + +   +++
Sbjct: 388 DGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVK 422


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/758 (30%), Positives = 378/758 (49%), Gaps = 103/758 (13%)

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
           K++  Y+K + +  A+  F  + V++V SW +++    + G S K++  FV+M  +G+  
Sbjct: 77  KMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEF 136

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D      +LK C  L     G  +HG V++VG D  V  AS+L+DMY K     E+ +VF
Sbjct: 137 DGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVF 196

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
            G+  +N V+W+++I G VQN L   A++ F EM       ++    S+L + A L  L 
Sbjct: 197 QGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELR 256

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G Q HA A+ +    D ++ ++ ++ Y+K   ++DA+++F      +  ++N +I  Y 
Sbjct: 257 LGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYS 316

Query: 361 Q------------------------------------SGQSD------VVVASSI----- 373
           Q                                     G S+      + + SS+     
Sbjct: 317 QEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVC 376

Query: 374 -----VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
                +DMY KC+ +  A +VF+ +  RD V WN ++AA+   G+  E   LF  M    
Sbjct: 377 VANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR 436

Query: 429 ISPNIISWNSVI-------LG---------------------------FLRNGQMNEAKD 454
           I P+  ++ S++       LG                           + + G + EA+ 
Sbjct: 437 IEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEK 496

Query: 455 M---FLQ-------------MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +   F Q             M +  +Q   ++W ++ISG        +A + F  M+E G
Sbjct: 497 IHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMG 556

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           I P   T    L  C ++AS   G+ IH  +I+ +L     I ++LVDMY+KCG++H ++
Sbjct: 557 ITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSR 616

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
            +F+ S  ++   +NAMI GYA HG   EA+ LF+ +  + I P+ +TF +IL AC+H G
Sbjct: 617 LMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 676

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           L+++GLE F  M  D+ + P + H+  +V++L + G +  AL +I  MP + D  I  +L
Sbjct: 677 LIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL 736

Query: 679 LSTC-VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           L  C +  N  E+AE  +  LL+L+P +   Y  LSN YA +G W +VS +R  M+   L
Sbjct: 737 LGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKL 796

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           +K PGCSW+++ +ELHVF+  D++HP+ EEIY  L L+
Sbjct: 797 KKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLI 834



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 128/504 (25%), Positives = 237/504 (47%), Gaps = 55/504 (10%)

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSL---------------------------- 223
           C   G +  G+  H +++  GF    FV + L                            
Sbjct: 16  CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75

Query: 224 ---IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
              I+ Y K  D+ +A   F+ M  R+VV+WNSM+ GY+QNG + ++I VF +M  EG+E
Sbjct: 76  NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
               +   IL   + L+    G Q H + V  G + D V  S++++ Y+K     ++  V
Sbjct: 136 FDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID-NAKQVFNSIILRDVV 399
           F  + E++ V+W+ +IA  VQ+      + S  +  + + ++++    Q   + +LR   
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNN-----LLSLALKFFKEMQKVNAGVSQSIYASVLRSC- 249

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
                 AA ++L   G+   L         + + I   + +  + +   M +A+ +F   
Sbjct: 250 ------AALSELRLGGQ---LHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNS 300

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
           ++L  Q    ++  +I+G +Q   G +A+L F  ++ +G+     +++    AC  V  L
Sbjct: 301 ENLNRQ----SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGL 356

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
             G  I+G  I+  L L   +  + +DMY KC  + +A RVFD    ++   +NA+I+ +
Sbjct: 357 SEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAH 416

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
             +G   E L LF ++ +  I+PD  TF +IL AC+  G +  G+E+   +        S
Sbjct: 417 EQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKSGMASNS 475

Query: 640 MEHFGC-VVNLLSRCGNLDEALRV 662
               GC ++++ S+CG ++EA ++
Sbjct: 476 --SVGCSLIDMYSKCGMIEEAEKI 497


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 237/834 (28%), Positives = 400/834 (47%), Gaps = 126/834 (15%)

Query: 8   TPPNPKF-----SHTKPQK-PLKLSQTHLTKLRESDN--------------SYESLYKSY 47
           T PNP       SH  PQ  PL  +  HL   +                  S E+ Y   
Sbjct: 8   THPNPPLLHLLASHRAPQPLPLTPAHGHLPPRKRPRGVGSAAAPPPPRAAASAEATYSDR 67

Query: 48  FHQISSLSKEKQIREAVDLLTEMKCRNFQIGPE-----IYGELLQGCVYKRDMYTGQQIH 102
              + +L    Q+ +A+ LL        +  PE      Y  L + C ++R +  G +  
Sbjct: 68  SAALRALCSHGQLAQALWLL--------ESSPEPPDEGAYVALFRLCEWRRAVDAGMRAC 119

Query: 103 ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL 162
           AR       F     +   ++    +   +  A R+F ++  ++VFSW  ++G   +VG 
Sbjct: 120 ARADAEHPSFGLR--LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGF 177

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
            E+AL  +  M   G+ PD +  P VL+ CG +     GR VH +VL+ GF   V V ++
Sbjct: 178 LEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNA 237

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L+ MY KCGD+  ARKVFDGM   + ++WN+MI G+ +N   E  + +F  M    V+P 
Sbjct: 238 LVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPN 297

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
            +++TS+  AS  L  +   K+ H  AV  G  +                          
Sbjct: 298 LMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAI-------------------------- 331

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                  DV   +S++ MY    R+ +A ++F+ +  +D + W 
Sbjct: 332 -----------------------DVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWT 368

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPN------------------------------ 432
            +++ Y   G   +A  ++  M+L  +SP+                              
Sbjct: 369 AMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNK 428

Query: 433 -----IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
                ++  N+++  + ++  +++A ++F  M     + ++++W+++I+G   N    EA
Sbjct: 429 GFIRYVVVANALLEMYAKSKHIDKAIEVFKFM----AEKDVVSWSSMIAGFCFNHRSFEA 484

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
           + +F+ ML   +KP++ T   ALSAC    +LR+G+ IH Y++R  +     +  +L+D+
Sbjct: 485 LYYFRYML-GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDL 543

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           Y KCG    A   F +   K++  +N M+SG+  HGL   AL+LF  + + G  PD +TF
Sbjct: 544 YVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTF 603

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
             +L ACS AG+V +G ELF  M     + P+++H+ C+V+LLSR G L EA  +I  MP
Sbjct: 604 VALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMP 663

Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
             PDA + G+LL+ C      EL E  ++ +L+LEP++   +V L + Y  +G+W +V++
Sbjct: 664 IKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVAR 723

Query: 728 VRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
           VR  M+EKGL ++ GCSW+++    H F+  D SHP+ +EI   + L G++ R+
Sbjct: 724 VRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEI--NVVLHGIYERM 775


>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 238/714 (33%), Positives = 367/714 (51%), Gaps = 44/714 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  +K     EA+    E+K    +      G +L        +  G  +HA+  K G 
Sbjct: 281 ISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEG- 339

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               N YV + LV  YAKC  +D A ++F  L  +N+  W A++G   + GL+++ +  F
Sbjct: 340 -LDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFF 398

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M+  G  PD F   ++  AC +L ++ FG  +H  ++K  F   +FVA++L+DMY K 
Sbjct: 399 SCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKS 458

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L+EARK F+ M   + V+WN++IVGYVQ   N+EA  +F  M   GV P  VS+ SI+
Sbjct: 459 GALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIV 518

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA AN+  L  G+Q H + V  G++     GSS+I+ Y K G++  A  VF  M  R++V
Sbjct: 519 SACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVV 578

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           + N LIA Y                       ++ A  +F  I +  +       A   D
Sbjct: 579 SVNALIAGYTMG-------------------HLEEAIHLFQEIQMVGLKPTEVTFAGLLD 619

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS--------- 461
            G  G A  L    Q+ G    ++ W     GFL + +M     + L M S         
Sbjct: 620 -GCDG-AFMLNLGRQIHG---QVMKW-----GFLSSSEMVCVSLLCLYMNSQRFVDSETL 669

Query: 462 ---LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
              L     L+ WT LISG  Q +   +A+ F+Q M    I P        L AC  ++S
Sbjct: 670 FSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSS 729

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMIS 577
           L+NG+ IH  +      +     +SL+DMYAKCG++  + +VF   P +   + +N+MI 
Sbjct: 730 LQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIV 789

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
           G A +G A EAL +FK ++Q+ I PD +TF  +L+ACSHAG V+EG ++F  M +++++ 
Sbjct: 790 GLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVNNYKLL 849

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
           P ++H GC+V++L R G L+EA   I  + C  D  +  +LL  C K  +    +  ++ 
Sbjct: 850 PRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRGKRAADK 909

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           L++L+P +  +YV LS+ YA S  W+    +R  MK KG++K PG SWI+ G +
Sbjct: 910 LMELKPQSSSSYVLLSSIYAESENWSGAVSLRREMKLKGVKKLPGYSWIEPGRD 963



 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 180/587 (30%), Positives = 287/587 (48%), Gaps = 69/587 (11%)

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           T + IH++ LK G        +   +V  Y KC  +D A + F RL  K+VF+W +++ +
Sbjct: 59  TAKVIHSKSLKIG--VGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSM 116

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
               GL    +  FV M    V P+ F    VL AC  L  V FGR VH  V K GF   
Sbjct: 117 YLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFR 176

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            F    LIDMY KC  L +AR VFDG +  + V+W ++I GYV++G   EA++VF  M  
Sbjct: 177 SFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQR 236

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI-INFYSKVGLLE 335
            G  P ++++ ++++A   L     G+ A A  +   +   NV+  ++ I+ ++K G  E
Sbjct: 237 VGHAPDQITLVTVVNAYVAL-----GRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAE 291

Query: 336 DAEVVF-------------------SRMVERDIVTWNLLI-ASYVQSGQSD-VVVASSIV 374
           +A   F                   S +    ++ +  ++ A   + G  D V V S++V
Sbjct: 292 EAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALV 351

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP--- 431
           +MYAKC ++D AKQVFNS+  R++VLWN +L  +A  G + E    F  M+  G  P   
Sbjct: 352 NMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEF 411

Query: 432 --------------------------------NIISWNSVILGFLRNGQMNEAKDMFLQM 459
                                           N+   N+++  + ++G + EA+  F  M
Sbjct: 412 TFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELM 471

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
           +   +  N ++W  +I G  Q    +EA   F+ M+  G+ P   ++   +SAC +V  L
Sbjct: 472 K---IHDN-VSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQEL 527

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
           + G+  H  L++  L   T   +SL+DMY KCG +  A+ VF   PS+ +   NA+I+GY
Sbjct: 528 KRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGY 587

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            M G   EA+ LF+ +Q  G+ P  +TF  +L+ C  A ++N G ++
Sbjct: 588 TM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQI 633



 Score =  232 bits (591), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 193/754 (25%), Positives = 329/754 (43%), Gaps = 141/754 (18%)

Query: 74  NFQIGPE--IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131
           N ++ P    +  +L  C   +D+  G+Q+H  + K G  F    + +  L+  YAKC  
Sbjct: 135 NHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTG--FGFRSFCQGGLIDMYAKCRY 192

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           L  A  +F      +  SW A+I    R G   +A+  F  MQ  G +PD   L  V+ A
Sbjct: 193 LRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNA 252

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
             AL                                   G L +ARK+F  +   NVVAW
Sbjct: 253 YVAL-----------------------------------GRLADARKLFTQIPNPNVVAW 277

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N MI G+ + G  EEAI  F E+   G++ TR S+ S+LSA A+L  L+ G   HA A  
Sbjct: 278 NVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATK 337

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------- 363
            G++ +  +GS+++N Y+K   ++ A+ VF+ + ER+IV WN ++  + Q+G        
Sbjct: 338 EGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEF 397

Query: 364 --------------------------------------------QSDVVVASSIVDMYAK 379
                                                        S++ VA+++VDMYAK
Sbjct: 398 FSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAK 457

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              +  A++ F  + + D V WN ++  Y     + EA  +F +M   G+ P+ +S  S+
Sbjct: 458 SGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASI 517

Query: 440 ILG-----------------------------------FLRNGQMNEAKDMFLQMQSLGV 464
           +                                     +++ G +  A+D+F  M S   
Sbjct: 518 VSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPS--- 574

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
             N+++   LI+G T      EAI  FQE+   G+KP+  T    L  C     L  GR 
Sbjct: 575 -RNVVSVNALIAGYTMGHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQ 632

Query: 525 IHGYLIRHDLCLPTPIV-TSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMH 582
           IHG +++      + +V  SL+ +Y        ++ +F ++   K L V+ A+ISGYA  
Sbjct: 633 IHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQ 692

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
               +AL  +++++   I PD   F ++L AC+    +  G E+   +F       +M+ 
Sbjct: 693 NHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIF---HTGFNMDE 749

Query: 643 FGC--VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
             C  ++++ ++CG++  +L+V   MP   +     S++    K+   E A  I + + Q
Sbjct: 750 VTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQ 809

Query: 701 --LEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
             + PD    ++ + +A + +GR +E  +V D+M
Sbjct: 810 QSIIPDEV-TFLGVLSACSHAGRVSEGRKVFDLM 842



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 207/418 (49%), Gaps = 57/418 (13%)

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L AL   K  H+ ++  G+ L  +LG+ I++ Y K G ++ A+  FSR+ ++D+  WN +
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 356 IASYVQSGQSDVVVAS-------------------------------------------- 371
           ++ Y+  G    VV S                                            
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGF 173

Query: 372 --------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
                    ++DMYAKC  + +A+ VF+  +  D V W  L+A Y   G   EA ++F +
Sbjct: 174 GFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDR 233

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           MQ  G +P+ I+  +V+  ++  G++ +A+ +F Q+ +    PN++ W  +ISG  +   
Sbjct: 234 MQRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPN----PNVVAWNVMISGHAKRGF 289

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
             EAI FF E+ +TG+K + +++   LSA   ++ L  G  +H    +  L     + ++
Sbjct: 290 AEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSA 349

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           LV+MYAKC  +  AK+VF+    + + ++NAM+ G+A +GLA E +  F  +++ G  PD
Sbjct: 350 LVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPD 409

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
             TFT+I +AC+    +N G +L   M  + +   ++     +V++ ++ G L EA +
Sbjct: 410 EFTFTSIFSACASLHYLNFGGQLHTVMIKN-KFASNLFVANALVDMYAKSGALKEARK 466



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 9/208 (4%)

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           +L   + IH   ++  + L   +   +VD+Y KCGN+  A++ F     K++  +N+++S
Sbjct: 56  ALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLS 115

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
            Y  HGL    +  F  +    + P+  TF  +L+ACS    VN G ++  G+F   +  
Sbjct: 116 MYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVF---KTG 172

Query: 638 PSMEHF--GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
                F  G ++++ ++C  L +A R++     + D     +L++  V+      A  + 
Sbjct: 173 FGFRSFCQGGLIDMYAKCRYLRDA-RLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVF 231

Query: 696 EHLLQL--EPDNPGNYVALSNAYAASGR 721
           + + ++   PD     V + NAY A GR
Sbjct: 232 DRMQRVGHAPDQI-TLVTVVNAYVALGR 258


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 230/774 (29%), Positives = 383/774 (49%), Gaps = 110/774 (14%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           +K +V  ++ + L  A +LF     ++V SW+A+I    R G   +A   F +M  +G+ 
Sbjct: 59  SKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQ 118

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           P+ F L ++LK   + G +G  R +HG+ ++ GF     + ++ I MY +CG LE+A++V
Sbjct: 119 PNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRV 178

Query: 240 FD--GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV-EPTRVSVTSILSASANL 296
           FD   ++A +++ WNS+I  Y+ +G   E +R+F +M   GV  PT ++  S+++A  + 
Sbjct: 179 FDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSS 238

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
                G   H   +  G+E  N L +S++ FY K G L+ A  +F R+  +D+V+WN +I
Sbjct: 239 GEEKYGAMVHGRIIKAGLEATN-LWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMI 297

Query: 357 ASYVQ-----------------------------------SGQS---------------- 365
           A+  Q                                   SG S                
Sbjct: 298 AANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLS 357

Query: 366 ---DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
              D  + +S++  Y+KC  +  A+++F  ++LRD++ WN++LA Y    + G    +F 
Sbjct: 358 LEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFK 417

Query: 423 QMQLEGISP---------NIISWNSVILGFLRNGQ-------------------MNEAKD 454
           +M L GI P         N  S +S  L + R G+                    N    
Sbjct: 418 RMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILK 477

Query: 455 MFLQMQSLGVQPNLI---------TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
           M+ +   +     +          +W  ++ G ++N+   + ++ F ++L+ G      +
Sbjct: 478 MYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVS 537

Query: 506 ITCALSACTDVASLRNGRAIHGYLIR--------HDLCLPTPIVTSLVDMYAKCGNIHQA 557
           ++  L++C  + SL+ G+  H  + +        H   L + I  +L+ MY+KCG+I  A
Sbjct: 538 LSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLS-INNALISMYSKCGSIKDA 596

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
            +VF     K++  + AMI+G A HGLAVEAL LF+ ++  GI P+ +TF  +L AC+H 
Sbjct: 597 AQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHG 656

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA-----LRVILTMPCDPDA 672
           GLV EG   F  M++D+ + PS+EH+ C+++L  R G  D A       + L  P   D 
Sbjct: 657 GLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDI 716

Query: 673 -HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
            ++   LL  C  S + +L    +  +L+LEP++   Y+ L+N YA+SG W +  +VR  
Sbjct: 717 LNLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKA 776

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           M++KGLRK  GCSWI  G   HVFVA D  HP+ +EIY  LA L    R +  V
Sbjct: 777 MRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYV 830



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 423 QMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
           + Q  G S   I   S    FL +   +E      Q+       ++I+W+ LI+  ++  
Sbjct: 41  EFQNHGFSSQFIFRCSACSKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSR-- 98

Query: 483 CGNEAILF--FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
           CGN A  F  FQ+M+  G++P+  ++   L        +   R +HG+ IR    L + I
Sbjct: 99  CGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGI 158

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISP--SKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
             + + MY++CG +  A+RVFD +   + ++ ++N++I+ Y  HG  VE L LF  +   
Sbjct: 159 RAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSV 218

Query: 599 G-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH---FGCVVNLLSRCG 654
           G + P  +T+ +++NAC      + G E +  M     +K  +E    +  +V    +CG
Sbjct: 219 GVVAPTELTYASVVNACG-----SSGEEKYGAMVHGRIIKAGLEATNLWNSLVTFYGKCG 273

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD-NPGNYVALS 713
           NL  A ++   +    D     ++++   +  E E A  +   +L++EP   P     LS
Sbjct: 274 NLQHASQLFERIS-RKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLS 332

Query: 714 NAYAASG 720
              A SG
Sbjct: 333 LLSAVSG 339


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/761 (29%), Positives = 386/761 (50%), Gaps = 26/761 (3%)

Query: 18  KPQKPLKLSQTHLTKLRES---DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRN 74
           KP+  L LS++ L +   S    +S  +   S+   I+  S +   R+ +     M   +
Sbjct: 5   KPKPNLLLSRSGLKRYVVSLPHPSSASATINSFNAIINHHSSQGAHRQVLATYASMLKTH 64

Query: 75  FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV 134
                  +  LL+ C        G  +H RIL +G   + + Y+ + L+ FYAK    DV
Sbjct: 65  VPSDAYTFPSLLKACSSLNLFSLGLSLHQRILVSG--LSLDAYIASSLINFYAKFGFADV 122

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A ++F  +  +NV  W +IIG   R G   +A   F EM+  G+ P +  + ++L     
Sbjct: 123 ARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSE 182

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           L  V   + +HG  +  GF   + +++S++ MYGKC ++E +RK+FD M  R++V+WNS+
Sbjct: 183 LAHV---QCLHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSL 239

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           +  Y Q G   E + +   M ++G EP   +  S+LS +A+   L  G+  H   +    
Sbjct: 240 VSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCF 299

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIV 374
           +LD  + +S+I  Y K G ++ A  +F R +++D+V W  +I+  VQ+G +D  +A    
Sbjct: 300 DLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAV--- 356

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
                       +Q+    +        +++ A A LG     + +   M    +  +I 
Sbjct: 357 -----------FRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIA 405

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           + NS++    + G ++++  +F +M     + NL++W  +I+G  QN    +A+  F EM
Sbjct: 406 TQNSLVTMHAKCGHLDQSSIVFDKMN----KRNLVSWNAMITGYAQNGYVCKALFLFNEM 461

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
                 P + TI   L  C     L  G+ IH ++IR+ L     + TSLVDMY KCG++
Sbjct: 462 RSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDL 521

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A+R F+  PS +L  ++A+I GY  HG    AL  +    + G+ P+ + F ++L++C
Sbjct: 522 DIAQRCFNQMPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSC 581

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
           SH GLV +GL ++  M  D  + P++EH  CVV+LLSR G ++EA  +      DP   +
Sbjct: 582 SHNGLVEQGLNIYESMTRDFGIAPNLEHHACVVDLLSRAGRVEEAYNLYKKKFSDPVLDV 641

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
           +G +L  C  +   EL + I+  +L L+P + GN+V L++ YA+  +W EV +    M+ 
Sbjct: 642 LGIILDACRANGNNELGDTIANDILMLKPMDAGNFVQLAHCYASINKWEEVGEAWTHMRS 701

Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            GL+K PG S+I I   +  F     SHP+ +EI  TL  L
Sbjct: 702 LGLKKIPGWSFIDIHGTITTFFTDHNSHPQFQEIVCTLKFL 742


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/680 (31%), Positives = 348/680 (51%), Gaps = 86/680 (12%)

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188
           C  L +A  LF ++    +  + A+I      G +    +     +     P+N+  P V
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           LKAC AL  +   RAVH +  + G    +FV+++L+D+Y KC     A  VF  M AR+V
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
           VAWN+M+ GY  +G   + I     M  +   P   ++ ++L   A   AL +G+  HA 
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQ-DDHAPNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVV 368
           +V                                              A  +   +  V+
Sbjct: 255 SVR---------------------------------------------ACSLHDHKDGVL 269

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           V ++++DMYAKC  +  A +VF ++ +R+ V W+ L+  +   GR  EA  LF  M  +G
Sbjct: 270 VGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQG 329

Query: 429 I---SP---------------------------------NIISWNSVILGFLRNGQMNEA 452
           +   SP                                 ++ + NS++  + + G +++A
Sbjct: 330 LCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQA 389

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
             +F QM    V  + ++++ L+SG  QN   +EA   F++M    ++P   T+   + A
Sbjct: 390 TTLFDQM----VVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPA 445

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C+ +A+L++G+  HG +I   +   T I  +L+DMYAKCG I  ++++FD+ P++++  +
Sbjct: 446 CSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSW 505

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
           N MI+GY +HGL  EA ALF +++ +  +PD +TF  +++ACSH+GLV EG   F  M  
Sbjct: 506 NTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAH 565

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
            + + P MEH+  +V+LL+R G LDEA + I  MP   D  + G+LL  C      +L +
Sbjct: 566 KYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGK 625

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
            +S  + QL P+  GN+V LSN ++A+GR++E ++VR I KE+G +K+PGCSWI+I   L
Sbjct: 626 QVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSL 685

Query: 753 HVFVACDRSHPKTEEIYATL 772
           H F+  DRSH ++ EIY  L
Sbjct: 686 HAFIGGDRSHAQSSEIYQEL 705



 Score =  209 bits (532), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 229/471 (48%), Gaps = 67/471 (14%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L+ C    D+ + + +H    + G     + +V T LV  YAKC +   A+ +F R+  
Sbjct: 135 VLKACSALLDLRSARAVHCHAARAG--LHADLFVSTALVDVYAKCASFRHAATVFRRMPA 192

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++V +W A++      G     +   + MQ+D  +P+   L  +L      G +  GRAV
Sbjct: 193 RDVVAWNAMLAGYALHGKYSDTIACLLLMQDDH-APNASTLVALLPLLAQHGALSQGRAV 251

Query: 205 HGYVLKV-----GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           H Y ++        DG V V ++L+DMY KCG L  A +VF+ M  RN V W++++ G+V
Sbjct: 252 HAYSVRACSLHDHKDG-VLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFV 310

Query: 260 QNGLNEEAIRVFYEMTLEG---VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
             G   EA  +F +M  +G   + PT  SV S L A ANL  L  GKQ HA+   +G+  
Sbjct: 311 LCGRMLEAFSLFKDMLAQGLCFLSPT--SVASALRACANLSDLCLGKQLHALLAKSGLHT 368

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD---------- 366
           D   G+S+++ Y+K GL++ A  +F +MV +D V+++ L++ YVQ+G++D          
Sbjct: 369 DLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQ 428

Query: 367 ------------------------------------------VVVASSIVDMYAKCERID 384
                                                       + ++++DMYAKC RID
Sbjct: 429 ACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRID 488

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
            ++Q+F+ +  RD+V WNT++A Y   G   EA+ LF  M+ +   P+ +++  +I    
Sbjct: 489 LSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACS 548

Query: 445 RNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
            +G + E K  F  M    G+ P +  +  ++  L +    +EA  F Q M
Sbjct: 549 HSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGM 599



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 194/384 (50%), Gaps = 25/384 (6%)

Query: 98  GQQIHARILKNGDFFARNE--YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
           G+ +HA  ++        +   V T L+  YAKC  L  ASR+F  + V+N  +W+A++G
Sbjct: 248 GRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVG 307

Query: 156 LNCRVGLSEKALIGFVEMQEDG---VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212
                G   +A   F +M   G   +SP +  + + L+AC  L  +  G+ +H  + K G
Sbjct: 308 GFVLCGRMLEAFSLFKDMLAQGLCFLSPTS--VASALRACANLSDLCLGKQLHALLAKSG 365

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
               +   +SL+ MY K G +++A  +FD M+ ++ V++++++ GYVQNG  +EA RVF 
Sbjct: 366 LHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFR 425

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
           +M    V+P   ++ S++ A ++L AL  GK  H   ++ G+  +  + +++I+ Y+K G
Sbjct: 426 KMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCG 485

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
            ++ +  +F  M  RDIV+WN +IA Y   G      A  +   +  CE  D        
Sbjct: 486 RIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDD-------- 537

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNE 451
                 V +  L++A +  G   E  R F+ M  + GI+P +  +  ++    R G ++E
Sbjct: 538 ------VTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDE 591

Query: 452 AKDMFLQMQSLGVQPNLITWTTLI 475
           A      +Q + ++ ++  W  L+
Sbjct: 592 AYQF---IQGMPLKADVRVWGALL 612



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 164/310 (52%), Gaps = 19/310 (6%)

Query: 59  QIREAVDLLTEMKCRNFQ-IGPEIYGELLQGCVYKRDMYTGQQIHARILKNG---DFFAR 114
           ++ EA  L  +M  +    + P      L+ C    D+  G+Q+HA + K+G   D  A 
Sbjct: 314 RMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAG 373

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ 174
           N      L+  YAK   +D A+ LF ++ VK+  S++A++    + G +++A   F +MQ
Sbjct: 374 NS-----LLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQ 428

Query: 175 EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLE 234
              V PD   + +++ AC  L  +  G+  HG V+  G      + ++LIDMY KCG ++
Sbjct: 429 ACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRID 488

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
            +R++FD M AR++V+WN+MI GY  +GL +EA  +F +M  +  EP  V+   ++SA +
Sbjct: 489 LSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACS 548

Query: 295 NLDALDEGKQ-----AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERD 348
           +   + EGK+     AH   +   ME  + +G  +++  ++ G L++A      M ++ D
Sbjct: 549 HSGLVTEGKRWFHMMAHKYGITPRME--HYIG--MVDLLARGGFLDEAYQFIQGMPLKAD 604

Query: 349 IVTWNLLIAS 358
           +  W  L+ +
Sbjct: 605 VRVWGALLGA 614


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/801 (28%), Positives = 414/801 (51%), Gaps = 87/801 (10%)

Query: 66  LLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVF 125
           +L     +N ++       LL   V  + +   +++H +++  G     + ++   L+  
Sbjct: 27  MLPSFSSQNVKVKGRALANLLLAPVSNKSILYYRKVHCQVVLWG--LQYDVFLSNLLLHS 84

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN-FV 184
           Y K  ++  A  LF ++  +N+ SW++++ +  ++G +EKAL+ F+E Q   V   N ++
Sbjct: 85  YFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYI 144

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           L ++++AC        G  VH YV+K GF   V+V +SL+ +Y K G++++AR VFDG++
Sbjct: 145 LASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLV 204

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            +  V W ++I GY ++G +E ++++F  M    V P +  ++SIL+A + L  L  GKQ
Sbjct: 205 LKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQ 264

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG- 363
            HA  + +  ++D    + +I+FY+K G ++  + +F R+  ++I++W  +IA Y+Q+  
Sbjct: 265 IHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSY 324

Query: 364 ---------------------------------------------------QSDVVVASS 372
                                                              + D  V ++
Sbjct: 325 DWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNA 384

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           ++DMY+KC  +D+AK+VF+ +    VV +N ++  Y+  G    A  +F +M+L+ +SP+
Sbjct: 385 LIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPS 444

Query: 433 IISW-------------------NSVIL--GFLRNGQMNEAK-DMFLQMQSL-------- 462
            +++                   + +I+  GF  +   + A  D++ +   +        
Sbjct: 445 FLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFE 504

Query: 463 -GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
                +++ W +L SG        EA   + ++  +  +P+  T     +A + +ASL +
Sbjct: 505 GTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPH 564

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G+  H  +++  L     I  +LVDMYAKCG++ +A+++F  S  K+   +N+MIS YA 
Sbjct: 565 GQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQ 624

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HG   EAL +F+ +    I+P+ +TF ++L+ACSH G V +GL+ +  M + + ++P +E
Sbjct: 625 HGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSM-ARYGIEPGIE 683

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+  VV LL R G L EA   I  M   P A +  SLLS C      ELA++ +E  + +
Sbjct: 684 HYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSACRVFGNVELAKHAAEMAISI 743

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           +P + G+YV LSN +A+ G W +V ++R  M   G+ K PG SWI++  E+H+FV+ D+ 
Sbjct: 744 DPMDSGSYVMLSNIFASKGMWGDVKRLRLKMDVNGVVKEPGQSWIEVNGEVHIFVSRDKV 803

Query: 762 HPKTEEIYATLALLGMHVRLV 782
           H +T+ IY  L  L   ++ V
Sbjct: 804 HDETDLIYLALDELTTQMKDV 824



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 149/515 (28%), Positives = 243/515 (47%), Gaps = 57/515 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+  +K  +   ++ L   M   N      +   +L  C     +  G+QIHA +L++  
Sbjct: 215 ITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSET 274

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               + Y    L+ FY KC  +     LF RL VKN+ SW  +I    +     +A+   
Sbjct: 275 KMDVSTY--NVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELV 332

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EM   G  PD +   +VL +CG++  +  GR +H YV+KV  +   FV ++LIDMY KC
Sbjct: 333 GEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKC 392

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             L++A++VFD +   +VV +N+MI GY + G    A+ VF EM L+ V P+ ++  S+L
Sbjct: 393 NALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLL 452

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
             SA L  L   KQ H + +  G  LD    S++I+ YSK   + DA  VF     +DIV
Sbjct: 453 GLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIV 512

Query: 351 TWNLLIASY----------------------------------------VQSGQ------ 364
            WN L + Y                                        +  GQ      
Sbjct: 513 VWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQV 572

Query: 365 ------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                 SD  + +++VDMYAKC  ++ A+++F+S + +D   WN++++ YA  G+  EA 
Sbjct: 573 MKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEAL 632

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
           R+F  M    I+PN +++ SV+      G + +    +  M   G++P +  + ++++ L
Sbjct: 633 RMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMARYGIEPGIEHYASVVTLL 692

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +     EA  F ++M    I+P+       LSAC
Sbjct: 693 GRAGRLTEAREFIEKMT---IRPAALVWRSLLSAC 724


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/570 (34%), Positives = 315/570 (55%), Gaps = 51/570 (8%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L  A  +F+ +   N++ WN+M  G+  N  +  A++++  M   G+ P   S   +L +
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A   AL EG+Q H   +  G +LD  + +S+I+ Y++ G LEDA  VF R   R +V++
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 134

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
             LI  Y   G                   I+NA+++F+ I ++DVV WN +++ Y +  
Sbjct: 135 TALITGYASRGY------------------INNARKLFDEISVKDVVSWNAMISGYVETC 176

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL---- 468
              EA  L+  M    + P+  +  +V+    ++G +   + +   ++  G   N+    
Sbjct: 177 NFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVN 236

Query: 469 ---------------------------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
                                      I+W TLI G T  +   EA+L FQEML +G  P
Sbjct: 237 VLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESP 296

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRH--DLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           +  T+   L AC  + ++  GR IH Y+ +    +   + ++TSL+DMYAKCG+I  AK+
Sbjct: 297 NDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQ 356

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VFD   ++ L  +NAMI G+AMHG A  A  LF  +++ GIDPD ITF  +L+ACSH+G+
Sbjct: 357 VFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGM 416

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           ++ G  +F  M  D+++ P +EH+GC+++LL  CG   EA  +I TMP +PD  I  SLL
Sbjct: 417 LDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLL 476

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
             C   N  EL E  +++L+++EP+NPG+YV LSN YA +GRW++V+++R ++ +KG++K
Sbjct: 477 KACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKK 536

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
            PGCS I+I   +H F+  D+ HP+  EIY
Sbjct: 537 APGCSSIEIDSVVHEFIIGDKFHPRNREIY 566



 Score =  169 bits (428), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 207/429 (48%), Gaps = 57/429 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNG------------DFFARNEYVE------------- 119
           LL+ C   + +  GQQIH  +LK G              +A+N  +E             
Sbjct: 71  LLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRH 130

Query: 120 ----TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
               T L+  YA    ++ A +LF  + VK+V SW A+I         ++AL  + +M +
Sbjct: 131 VVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMK 190

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
             V PD   +  V+ AC   G +  GR +H ++   GF   + + + LID+Y KCG++E 
Sbjct: 191 TNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A  +F G+  ++V++WN++I G+    L +EA+ +F EM   G  P  V++ S+L A A+
Sbjct: 251 ACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 310

Query: 296 LDALDEGKQAHAV--AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           L A+D G+  H      + G+   + L +S+I+ Y+K G +E A+ VF  M+ R + +WN
Sbjct: 311 LGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWN 370

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA----AYA 409
            +I  +   G+     A++  D+++K  +        N I   D+     L A       
Sbjct: 371 AMIFGFAMHGK-----ANAAFDLFSKMRK--------NGIDPDDITFVGLLSACSHSGML 417

Query: 410 DLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
           DLGR      +F  M Q   I+P +  +  +I      G   EAK+M   ++++ ++P+ 
Sbjct: 418 DLGR-----HIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEM---IRTMPMEPDG 469

Query: 469 ITWTTLISG 477
           + W +L+  
Sbjct: 470 VIWCSLLKA 478



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/518 (25%), Positives = 239/518 (46%), Gaps = 92/518 (17%)

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
           D L  A  +F  ++  N+  W  +   +     S  AL  +V M   G+ P+++  P +L
Sbjct: 13  DGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLL 72

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE-------------- 235
           K+C     +  G+ +HG+VLK+G+D  ++V +SLI MY + G LE+              
Sbjct: 73  KSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVV 132

Query: 236 -----------------ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
                            ARK+FD +  ++VV+WN+MI GYV+    +EA+ ++ +M    
Sbjct: 133 SYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTN 192

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V+P   ++ +++SA A   +++ G+Q H+    +G   +  + + +I+ YSK G +E A 
Sbjct: 193 VKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETAC 252

Query: 339 VVFSRMVERDIVTWNLLIASY----------------VQSGQS--DVVVAS--------- 371
            +F  + ++D+++WN LI  +                ++SG+S  DV + S         
Sbjct: 253 GLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLG 312

Query: 372 ---------------------------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                                      S++DMYAKC  I+ AKQVF+S++ R +  WN +
Sbjct: 313 AIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAM 372

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLG 463
           +  +A  G++  A  LF +M+  GI P+ I++  ++     +G ++  + +F  M Q   
Sbjct: 373 IFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYK 432

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA-LSACTDVASLRNG 522
           + P L  +  +I  L       EA    +EM+ T        I C+ L AC    ++  G
Sbjct: 433 ITPKLEHYGCMIDLLGHCGLFKEA----KEMIRTMPMEPDGVIWCSLLKACKMHNNVELG 488

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            +    LI+ +   P   V  L ++YA  G   Q  ++
Sbjct: 489 ESYAQNLIKIEPENPGSYVL-LSNIYATAGRWDQVAKI 525



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 164/322 (50%), Gaps = 16/322 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS   +    +EA++L  +M   N +        ++  C     +  G+Q+H+ I
Sbjct: 164 SWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWI 223

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             +G  F  N  +   L+  Y+KC  ++ A  LF  L  K+V SW  +IG +  + L ++
Sbjct: 224 EDHG--FGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKE 281

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSL 223
           AL+ F EM   G SP++  + +VL AC  LG +  GR +H Y+ K   G      + +SL
Sbjct: 282 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSL 341

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           IDMY KCGD+E A++VFD M+ R++ +WN+MI G+  +G    A  +F +M   G++P  
Sbjct: 342 IDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDD 401

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDA 337
           ++   +LSA ++   LD G+      +   M  D  +   +      I+     GL ++A
Sbjct: 402 ITFVGLLSACSHSGMLDLGRH-----IFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEA 456

Query: 338 -EVVFSRMVERDIVTWNLLIAS 358
            E++ +  +E D V W  L+ +
Sbjct: 457 KEMIRTMPMEPDGVIWCSLLKA 478


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/721 (31%), Positives = 370/721 (51%), Gaps = 84/721 (11%)

Query: 137 RLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
           ++F  +  +  F+W  +IG     G    AL  +  M+ +GV       P +LKAC  L 
Sbjct: 100 KVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLR 159

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI 255
            +  G  +H  ++K+G+    F+ ++L+ MY K  DL  AR++FDG   + + V WNS++
Sbjct: 160 DIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSIL 219

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
             Y  +G + E + +F EM + G  P   ++ S L+A         GK+ HA  + +   
Sbjct: 220 SSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTH 279

Query: 316 LDNV-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ------------- 361
              + + +++I  Y++ G +  AE +  +M   D+VTWN LI  YVQ             
Sbjct: 280 SSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSD 339

Query: 362 -------------------SGQ--------------------SDVVVASSIVDMYAKCER 382
                              SG+                    S++ V ++++DMY+KC  
Sbjct: 340 MIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNL 399

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY-----QMQL-EGISPNIISW 436
                + F  +  +D++ W T++A YA      EA  LF      +M++ E I  +I+  
Sbjct: 400 TCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRA 459

Query: 437 NSVILGFL----------RNGQM-----NEAKDMFLQMQSLGVQ---------PNLITWT 472
           +SV+   L          R G +     NE  D++ + +++G            ++++WT
Sbjct: 460 SSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWT 519

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           ++IS    N   +EA+  F+ M+ETG+   +  + C LSA   +++L  GR IH YL+R 
Sbjct: 520 SMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRK 579

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
             CL   I  ++VDMYA CG++  AK VFD    K L  Y +MI+ Y MHG    A+ LF
Sbjct: 580 GFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELF 639

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
             ++ + + PD I+F  +L ACSHAGL++EG      M  +++++P  EH+ C+V++L R
Sbjct: 640 DKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGR 699

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
              + EA   +  M  +P A +  +LL+ C   +E E+ E  ++ LL+LEP NPGN V +
Sbjct: 700 ANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLV 759

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           SN +A  GRWN+V +VR  MK  G+ K+PGCSWI++  ++H F A D+SHP+++EIY  L
Sbjct: 760 SNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKL 819

Query: 773 A 773
           +
Sbjct: 820 S 820



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 160/615 (26%), Positives = 272/615 (44%), Gaps = 106/615 (17%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           A+ L   M+     +G   +  LL+ C   RD+ +G ++H+ ++K G  +    ++   L
Sbjct: 129 ALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLG--YHSTGFIVNAL 186

Query: 123 VVFYAKCDALDVASRLFCRLRVK-NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           V  YAK D L  A RLF   + K +   W +I+      G S + L  F EM   G +P+
Sbjct: 187 VSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPN 246

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC-VFVASSLIDMYGKCGDLEEARKVF 240
           ++ + + L AC    +   G+ +H  VLK       ++V ++LI MY +CG + +A ++ 
Sbjct: 247 SYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERIL 306

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
             M   +VV WNS+I GYVQN + +EA+  F +M   G +   VS+TSI++AS  L  L 
Sbjct: 307 RQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLL 366

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G + HA  + +G + +  +G+++I+ YSK  L       F RM ++D+++W  +IA Y 
Sbjct: 367 AGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYA 426

Query: 361 QS---------------------------------------------------GQSDVVV 369
           Q+                                                   G  D V+
Sbjct: 427 QNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVI 486

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
            + +VD+Y KC  +  A +VF SI  +DVV W +++++ A  G   EA  LF +M   G+
Sbjct: 487 QNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGL 546

Query: 430 SPNIISW----------------NSVILGFLRN-------------------GQMNEAKD 454
           S + ++                   +    LR                    G +  AK 
Sbjct: 547 SADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKA 606

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F +++  G    L+ +T++I+    + CG  A+  F +M    + P   +    L AC+
Sbjct: 607 VFDRIERKG----LLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 662

Query: 515 DVASLRNGRAIHGYL--IRHDLCL-PTP-IVTSLVDMYAKCGNIHQA---KRVFDISPSK 567
               L  GR   G+L  + H+  L P P     LVDM  +   + +A    ++    P+ 
Sbjct: 663 HAGLLDEGR---GFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTA 719

Query: 568 ELPVYNAMISGYAMH 582
           E  V+ A+++    H
Sbjct: 720 E--VWCALLAACRSH 732



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 134/244 (54%), Gaps = 7/244 (2%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA++L  ++  +  +I   I G +L+     + M   ++IH  IL+ G     +  ++ +
Sbjct: 433 EALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLL---DTVIQNE 489

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           LV  Y KC  +  A+R+F  ++ K+V SW ++I  +   G   +A+  F  M E G+S D
Sbjct: 490 LVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSAD 549

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGF--DGCVFVASSLIDMYGKCGDLEEARKV 239
           +  L  +L A  +L  +  GR +H Y+L+ GF  +G + VA  ++DMY  CGDL+ A+ V
Sbjct: 550 SVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVA--VVDMYACCGDLQSAKAV 607

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD +  + ++ + SMI  Y  +G  + A+ +F +M  E V P  +S  ++L A ++   L
Sbjct: 608 FDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLL 667

Query: 300 DEGK 303
           DEG+
Sbjct: 668 DEGR 671



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 149/330 (45%), Gaps = 41/330 (12%)

Query: 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
           V    S V   + ++++  K  R  + ++VF+ +  R    WNT++ AY   G    A  
Sbjct: 73  VSENNSPVEAFAYVLELCGK-RRAVSQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALA 131

Query: 420 LFYQMQLEGISPNIISW-----------------------------------NSVILGFL 444
           L++ M++EG+   + S+                                   N+++  + 
Sbjct: 132 LYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYA 191

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
           +N  ++ A+ +F   Q  G   + + W +++S  + +    E +  F+EM  TG  P++ 
Sbjct: 192 KNDDLSAARRLFDGFQEKG---DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSY 248

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDL-CLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
           TI  AL+AC   +  + G+ IH  +++         +  +L+ MY +CG + QA+R+   
Sbjct: 249 TIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQ 308

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
             + ++  +N++I GY  + +  EAL  F ++   G   D ++ T+I+ A      +  G
Sbjct: 309 MNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAG 368

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
           +EL   +   H    +++    ++++ S+C
Sbjct: 369 MELHAYVIK-HGWDSNLQVGNTLIDMYSKC 397


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/590 (33%), Positives = 347/590 (58%), Gaps = 21/590 (3%)

Query: 172 EMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCG 231
           +M   GV PD+   P VLKAC     V  GR VHG V+K+GF+  VFV ++L+  YG CG
Sbjct: 31  QMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVVKLGFESDVFVGNTLLSFYGNCG 90

Query: 232 DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN-EEAIRVFYEMTLEGVEPTRVSVTSIL 290
            L +A +VFD M  +++V+WN+MI  +  NG +  +A+ +F  M  EG++P  ++++S L
Sbjct: 91  GLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSITISSFL 150

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
                L+    G++ H  ++  G+E D  + +S+I+ Y+K G   +A  VF ++  +++V
Sbjct: 151 PVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVV 210

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           +WN +IA++ Q+     +VA  +V       ++ +  ++ NS+   +V      L A A 
Sbjct: 211 SWNAMIANFAQNRFE--LVAVGLV------RQMQDYGELPNSVTFTNV------LPACAR 256

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
           +G       +  +    G + ++   N++   + ++G +  A+++F    SL    + ++
Sbjct: 257 MGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVF--DTSL---RDEVS 311

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           +  LI G +Q S  +E++  F EM   G+K    +   ALSAC ++ +++ G+ IHG+L+
Sbjct: 312 YNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLL 371

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           R    +   +  SL+D Y KCG I  A+ +FD   +K++  +N MI GY M G    A+ 
Sbjct: 372 RKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAID 431

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF+N+++  ++ DS++F  +L+ACSH GL+ +G + F  +     ++P+  H+ C+V+LL
Sbjct: 432 LFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDEL-KARGIEPTQMHYACMVDLL 490

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
            R G ++EA  +I  +P  PDA+I G+LL  C      ELA + +EHL +L+P++ G Y 
Sbjct: 491 GRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPEHSGYYT 550

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
            LSN YA +GRW+E +++R++MK +G++K+PGCSW+QIGE+ H FV  ++
Sbjct: 551 LLSNMYAETGRWDEANRIRELMKSRGVKKSPGCSWVQIGEQAHAFVVGEK 600



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/539 (25%), Positives = 249/539 (46%), Gaps = 66/539 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L+ C    ++  G+++H  ++K G  F  + +V   L+ FY  C  L  A R+F  +  
Sbjct: 47  VLKACADAFEVRKGREVHGSVVKLG--FESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPE 104

Query: 145 KNVFSWAAIIGLNCRVGLSEK-ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
           K++ SW  +IG+    G   + AL  F  M ++G+ P++  + + L     L +   GR 
Sbjct: 105 KDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGRE 164

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           VHG  +++G +  +F+A+SLIDMY K G   EA  VF  + A+NVV+WN+MI  + QN  
Sbjct: 165 VHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRF 224

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
              A+ +  +M   G  P  V+ T++L A A +  +  GK+ HA ++  G   D  + ++
Sbjct: 225 ELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNA 284

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------QS 365
           + + Y+K G L+ A  VF   + RD V++N+LI  + Q+                   Q 
Sbjct: 285 LTDMYAKSGHLKLARNVFDTSL-RDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQD 343

Query: 366 DV----------------------------------VVASSIVDMYAKCERIDNAKQVFN 391
           +V                                   VA+S++D Y KC RI  A+ +F+
Sbjct: 344 NVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFD 403

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
            +  +DV  WNT++  Y  LG    A  LF  M+ + +  + +S+ +V+      G + +
Sbjct: 404 RMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEK 463

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
            +  F ++++ G++P  + +  ++  L +     EA    + +    I P        L 
Sbjct: 464 GRKYFDELKARGIEPTQMHYACMVDLLGRAGLMEEAAELIKGL---PIVPDANIWGALLG 520

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLP---TPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
           AC    +L     +  +   H   L    +   T L +MYA+ G   +A R+ ++  S+
Sbjct: 521 ACRIYGNLE----LAAWAAEHLFELKPEHSGYYTLLSNMYAETGRWDEANRIRELMKSR 575



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 3/211 (1%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SY   I   S+     E++ L +EM+    +     +   L  C     +  G++IH  +
Sbjct: 311 SYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFL 370

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           L+    F  + +V   L+ FY KC  + +A  +F R+  K+V SW  +I     +G  + 
Sbjct: 371 LRK--LFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDT 428

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  F  M++D V  D+     VL AC   G +  GR     +   G +      + ++D
Sbjct: 429 AIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKARGIEPTQMHYACMVD 488

Query: 226 MYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
           + G+ G +EEA ++  G+ I  +   W +++
Sbjct: 489 LLGRAGLMEEAAELIKGLPIVPDANIWGALL 519


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/733 (30%), Positives = 379/733 (51%), Gaps = 67/733 (9%)

Query: 79  PEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRL 138
           P    +LL+ C   R+      IHA ++        +  + ++++ F    + LD A ++
Sbjct: 35  PHWIIDLLKSCSNIREF---SPIHAHLITAN--LIHDPEITSQVLAFLLSVNNLDCAHQI 89

Query: 139 FCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
                      W  ++    + G  ++ L  +  M   GV  D      ++ AC     V
Sbjct: 90  LSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDV 149

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
             G  VHG +LK GF     + ++L+ +Y KCG L+E  ++F+ M  R+V++WN+MI  Y
Sbjct: 150 KLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCY 209

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM---- 314
           V  G+  EA+ +F EM + GV P  +++ S++S  A L  L+ GK+ H   V N +    
Sbjct: 210 VLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRG 269

Query: 315 -----------------------------ELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
                                        E+D VL +++++ Y K   ++ A  +F +M 
Sbjct: 270 SLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMN 329

Query: 346 ERDIVTWNLLIASYVQSGQ-----------------SDVVVASSIVDMYAKCERIDNAKQ 388
           ER +V+W  +++ YVQ G                   D V   +++      E  D  + 
Sbjct: 330 ERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRS 389

Query: 389 VFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
           V   I+    L D  L N LL  YA  G+  EA R F Q+  +  +    SWNS++ GF 
Sbjct: 390 VHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAA----SWNSMLDGFC 445

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
           R+G +++A+D F ++     + ++++W T+++   ++   NE+   F +M  + +KP  T
Sbjct: 446 RSGGVDKARDFFNKIP----EKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKT 501

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           T+   LS+C  V +L +G  ++ Y+ ++++ +   + T+L+DMY KCG +  A  +F   
Sbjct: 502 TLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQI 561

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
             K + V+ AM++ YAM G A+EA+ L+  ++++G+ PD +TF  +L ACSH GLV+EG 
Sbjct: 562 IEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGY 621

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
           + F  + S + + P++ H+GC+V+LL R G+L+E ++ I  MP +PD  I  SL+  C  
Sbjct: 622 KYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRS 681

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
            +  ELAE   + L++++P N G +V LSN YA +GRW++VS+VR  + E G+ K PG +
Sbjct: 682 HHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFT 741

Query: 745 WIQIGEELHVFVA 757
            I+    +H FVA
Sbjct: 742 MIEQNGVVHEFVA 754



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/615 (24%), Positives = 274/615 (44%), Gaps = 92/615 (14%)

Query: 56  KEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARN 115
           KE   +E ++    M  +   +    +  L+  C    D+  G ++H RILK G  F RN
Sbjct: 110 KEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCG--FGRN 167

Query: 116 EYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
           + +   L+  Y+KC  L    +LF ++  ++V SW  +I      G+  +AL  F EM  
Sbjct: 168 KSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLV 227

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL--KVGFDGCVFVASSLIDMYGKCGDL 233
            GV PD   + +++  C  L  +  G+ +H Y++  K+   G +   + L+DMY KCG +
Sbjct: 228 SGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLL--NCLVDMYSKCGKM 285

Query: 234 EE---------------------------------ARKVFDGMIARNVVAWNSMIVGYVQ 260
           +E                                 AR++FD M  R++V+W +M+ GYVQ
Sbjct: 286 DEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQ 345

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            G   E++ +F +M  E V P  V++ ++LSA  +L+  D G+  HA  V  GM +D  L
Sbjct: 346 GGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFL 405

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G+++++ Y+K G L++A   F ++  +   +WN ++  + +SG                 
Sbjct: 406 GNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGG---------------- 449

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             +D A+  FN I  +D+V WNT++ AY       E+  +F +MQ   + P+  +  S++
Sbjct: 450 --VDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLL 507

Query: 441 LGFLRNGQMNEA--KDMFLQMQSLG-----------------------------VQPNLI 469
               + G +N     +++++   +G                             ++ N+ 
Sbjct: 508 SSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVF 567

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
            WT +++         EAI  + EM E G+KP   T    L+AC+    +  G      L
Sbjct: 568 VWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKL 627

Query: 530 IRHDLCLPT-PIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVE 587
                 +PT      +VD+  + G++ +  +  +  P   ++ ++++++     H     
Sbjct: 628 RSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVEL 687

Query: 588 ALALFKNLQQKGIDP 602
           A   FK L +  IDP
Sbjct: 688 AEQAFKQLIE--IDP 700


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/727 (31%), Positives = 359/727 (49%), Gaps = 82/727 (11%)

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
             LLQ C+ + D   G+ +HAR+++ G     + +    L+  YAK   L  A RLF  +
Sbjct: 51  ARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGM 110

Query: 143 RVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
             +N+ S+  ++ G   R G  E A + F  +Q +G   ++FVL  +LK   A+   G  
Sbjct: 111 PERNMVSFVTLVQGYALRGGFEEAAGL-FRRLQREGHEVNHFVLTTILKVLVAMDAPGLT 169

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             +H    K+G D   FV SSLID Y  CG +  AR VFDG+I ++ V W +M+  Y +N
Sbjct: 170 CCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSEN 229

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
            + E+A+  F +M + G +P    +TS+L A+  L +   GK  H  A            
Sbjct: 230 DIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCA------------ 277

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
                    V  L D E                              V  +++DMYAKC 
Sbjct: 278 ---------VKTLCDTEPH----------------------------VGGALLDMYAKCG 300

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI- 440
            I++A+ VF  I   DV+LW+ L++ YA   ++ +A  +F +M    + PN  S + V+ 
Sbjct: 301 YIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQ 360

Query: 441 ----LGFLRNGQM-----------------NEAKDMFLQMQSLG---------VQPNLIT 470
               + FL  GQ                  N   D++ + +++             N ++
Sbjct: 361 ACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVS 420

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W T+I G  Q+    +A+  FQEM    +  +  T +  L AC + AS+++   IH  + 
Sbjct: 421 WNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIE 480

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           +      T +  SL+D YAKCG I  A +VF+     ++  +NA+ISGYA+HG A +AL 
Sbjct: 481 KSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALE 540

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF  + +    P+ +TF  +L+ C   GLVN+GL LF  M  DH++KPSM+H+ C+V LL
Sbjct: 541 LFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLL 600

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
            R G L++AL+ I  +P  P   +  +LLS+CV      L ++ +E +L++EP +   YV
Sbjct: 601 GRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYV 660

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            LSN YAA+G  ++V+ +R  M+  G++K  G SW++I  E+H F      HP    I A
Sbjct: 661 LLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINA 720

Query: 771 TLALLGM 777
            L  L +
Sbjct: 721 MLEWLNL 727


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/714 (30%), Positives = 357/714 (50%), Gaps = 87/714 (12%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y     L  A +LF ++   NV +W  +I  + + G +E+A+  F+E+++ G+      L
Sbjct: 253 YVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSL 312

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
            +VL A  +L  + +G  VH   +K G D  V+V S+L++MY KC  ++ A++VF+ +  
Sbjct: 313 GSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGE 372

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           RN+V WN+M+ G+ QNGL +E +  F  M   G +P   + TSI SA A+L  LD G Q 
Sbjct: 373 RNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQL 432

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           H V + N    +  + +++++ Y+K G L++A   F  M   D V+WN +I  YVQ   +
Sbjct: 433 HTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYN 492

Query: 366 D----------------------------------------------------VVVASSI 373
           D                                                        SS+
Sbjct: 493 DEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSL 552

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           +DMY KC  +  A+ VF S+  R+VV  N L+A Y  +    EA  LF ++Q+ G+ P  
Sbjct: 553 IDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYT-MSHLEEAIHLFQEIQMVGLKPTE 611

Query: 434 ISWNSVI---------------------LGFLRNGQMNEAKDMFLQMQS----------- 461
           +++  ++                      GFL + +M     + + M S           
Sbjct: 612 VTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFS 671

Query: 462 -LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
            L     L+ WT LISG  Q +   +A+ F+Q M    I P   T    L AC  ++SL+
Sbjct: 672 ELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQ 731

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISGY 579
            G+ +H  +      +     +SL+DMYAKCG++  + +VF   P +   + +N+MI G 
Sbjct: 732 TGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGL 791

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
           A +G A EAL +FK ++Q+ I PD +TF  +L+ACSHAG V+EG ++F  M ++++++P 
Sbjct: 792 AKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVNNYKLQPR 851

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           ++H GC+V++L R G L+EA   I  + C  D  +  +LL  C K  +    +  +  L+
Sbjct: 852 VDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRGKRAANKLM 911

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
           +L+P +  +YV LS  YA S  W+    +R  MK KG++K PG SWI+ G ++ 
Sbjct: 912 ELKPQSSSSYVLLSGLYAESENWSGADSLRREMKLKGVKKLPGYSWIEPGRDVQ 965



 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 176/587 (29%), Positives = 290/587 (49%), Gaps = 69/587 (11%)

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           T + IH++ LK G        +   +V  Y KC  +D A + F RL  K+VF+W +++ +
Sbjct: 59  TAKVIHSKSLKIG--VGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSM 116

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
               GL    +  FV M   GV P+ F    VL AC  L  + +G+ VH  V K+GF   
Sbjct: 117 YLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFR 176

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            F    LIDMY KC +L +AR VFDG +  + V+W ++I GYV++G   EA++VF +M  
Sbjct: 177 SFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQR 236

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI-INFYSKVGLLE 335
            G  P ++++ ++++A   L     G+ A A  +   +   NV+  ++ I+ ++K G  E
Sbjct: 237 VGHVPDQIALVTVINAYVAL-----GRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAE 291

Query: 336 DAEVVF-------------------SRMVERDIVTWNLLI-ASYVQSGQSD-VVVASSIV 374
           +A   F                   S +    ++ +  ++ A  ++ G  D V V S++V
Sbjct: 292 EAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALV 351

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP--- 431
           +MYAKC ++D AKQVFNS+  R++VLWN +L  +A  G + E    F  M+  G  P   
Sbjct: 352 NMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEF 411

Query: 432 --------------------------------NIISWNSVILGFLRNGQMNEAKDMFLQM 459
                                           N+   N+++  + ++G + EA+  F  M
Sbjct: 412 TFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFM 471

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
           +   +  N ++W  +I G  Q    +EA   F+ M+  G+ P   ++   +SAC +V   
Sbjct: 472 K---IHDN-VSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEF 527

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
           + G+  H  L++  L   T   +SL+DMY KCG +  A+ VF   P + +   NA+I+GY
Sbjct: 528 KQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGY 587

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            M  L  EA+ LF+ +Q  G+ P  +TF  +L+ C  A ++N G ++
Sbjct: 588 TMSHLE-EAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQI 633



 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 191/744 (25%), Positives = 326/744 (43%), Gaps = 139/744 (18%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  +L  C   +D+  G+Q+H  + K G  F    + +  L+  YAKC  L  A  +F  
Sbjct: 145 FAMVLSACSGLQDINYGKQVHCGVFKMG--FGFRSFCQGGLIDMYAKCRNLRDARLVFDG 202

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
               +  SW  +I    R G   +A+  F +MQ  G  PD   L  V+ A     +V  G
Sbjct: 203 ALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINA-----YVALG 257

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R                              L +ARK+F  +   NVVAWN MI G+ + 
Sbjct: 258 R------------------------------LADARKLFTQIPNPNVVAWNVMISGHAKR 287

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G  EEAI  F E+   G++ TR S+ S+LSA A+L  L+ G   HA A+  G++ +  +G
Sbjct: 288 GFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVG 347

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------ 363
           S+++N Y+K   ++ A+ VF+ + ER+IV WN ++  + Q+G                  
Sbjct: 348 SALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQ 407

Query: 364 ----------------------------------QSDVVVASSIVDMYAKCERIDNAKQV 389
                                              S++ VA+++VDMYAK   +  A++ 
Sbjct: 408 PDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQ 467

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG------- 442
           F  + + D V WN ++  Y     + EA  +F +M   G+ P+ +S  S++         
Sbjct: 468 FEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEF 527

Query: 443 ----------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
                                       +++ G +  A+D+F  M       N+++   L
Sbjct: 528 KQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMP----YRNVVSINAL 583

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           I+G T +    EAI  FQE+   G+KP+  T    L  C     L  GR IHG +++   
Sbjct: 584 IAGYTMSHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGF 642

Query: 535 CLPTPIV-TSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGLAVEALALF 592
              + +V  SL+ MY        ++ +F ++   K L V+ A+ISGYA      +AL  +
Sbjct: 643 LSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFY 702

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC--VVNLL 650
           ++++   I PD  TF ++L AC+    +  G E+   +F       +M+   C  ++++ 
Sbjct: 703 QHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIF---HTGFNMDEITCSSLIDMY 759

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ--LEPDNPGN 708
           ++CG++  +L+V   MP         S++    K+   E A  I + + Q  + PD    
Sbjct: 760 AKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEV-T 818

Query: 709 YVALSNAYAASGRWNEVSQVRDIM 732
           ++ + +A + +GR +E  +V D+M
Sbjct: 819 FLGVLSACSHAGRVSEGRKVFDLM 842



 Score =  189 bits (479), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 209/420 (49%), Gaps = 57/420 (13%)

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A L AL   K  H+ ++  G+ L  +LG+ I++ Y K G ++ A+  FSR+ ++D+  WN
Sbjct: 52  AVLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWN 111

Query: 354 LLIASYVQSGQSDVVVAS------------------------------------------ 371
            +++ Y+  G    VV S                                          
Sbjct: 112 SVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKM 171

Query: 372 ----------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
                      ++DMYAKC  + +A+ VF+  +  D V W TL+A Y   G   EA ++F
Sbjct: 172 GFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVF 231

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
            +MQ  G  P+ I+  +VI  ++  G++ +A+ +F Q+ +    PN++ W  +ISG  + 
Sbjct: 232 DKMQRVGHVPDQIALVTVINAYVALGRLADARKLFTQIPN----PNVVAWNVMISGHAKR 287

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541
               EAI FF E+ +TG+K + +++   LSA   ++ L  G  +H   I+  L     + 
Sbjct: 288 GFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVG 347

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
           ++LV+MYAKC  +  AK+VF+    + + ++NAM+ G+A +GLA E +  F  +++ G  
Sbjct: 348 SALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQ 407

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
           PD  TFT+I +AC+    ++ G +L   M  + +   ++     +V++ ++ G L EA +
Sbjct: 408 PDEFTFTSIFSACASLHYLDFGGQLHTVMIKN-KFTSNLFVANALVDMYAKSGALKEARK 466



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 102/208 (49%), Gaps = 9/208 (4%)

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           +L   + IH   ++  + L   +   +VD+Y KCGN+  A++ F     K++  +N+++S
Sbjct: 56  ALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLS 115

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
            Y  HGL    +  F  +   G+ P+  TF  +L+ACS    +N G ++  G+F   ++ 
Sbjct: 116 MYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVF---KMG 172

Query: 638 PSMEHF--GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
                F  G ++++ ++C NL +A R++     + D     +L++  V+      A  + 
Sbjct: 173 FGFRSFCQGGLIDMYAKCRNLRDA-RLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVF 231

Query: 696 EHLLQLE--PDNPGNYVALSNAYAASGR 721
           + + ++   PD     V + NAY A GR
Sbjct: 232 DKMQRVGHVPDQIA-LVTVINAYVALGR 258


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 224/720 (31%), Positives = 367/720 (50%), Gaps = 121/720 (16%)

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG--CVFVASSLIDMYGKCGDLE 234
           G SPDNF  P VLKA   +  +  G+ +H +V K G+     V + ++L++MYGKCG L 
Sbjct: 5   GFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLG 64

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
           +A KVFD +  R+ V+WNS+I    +    E AI+ F  M +EG EP+  ++ S+  A +
Sbjct: 65  DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACS 124

Query: 295 NL---DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           NL   D L  GKQ H      G        ++++  Y+K+G L+DA+ +     +RD+VT
Sbjct: 125 NLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVT 183

Query: 352 WNLLIASYVQSGQ----------------------------------------------- 364
           WN +I+S+ Q+ +                                               
Sbjct: 184 WNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYAL 243

Query: 365 --SDVV----VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
              DV+    V S++VDMY  C ++++ + VF+S++ R + LWN ++A YA      +A 
Sbjct: 244 RTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKAL 303

Query: 419 RLFYQMQ---------------------LEGIS---------------PNIISWNSVILG 442
            LF +M+                      EGIS                N    N++I  
Sbjct: 304 MLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDM 363

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML------- 495
           + R G +  +K +F  M+      ++++W T+I+        ++A+L   EM        
Sbjct: 364 YSRMGDIKTSKRIFDSME----DRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKST 419

Query: 496 ---------ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
                    +   KP++ T+   L  C  +++L  G+ IH Y IR+ L     + ++LVD
Sbjct: 420 YDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVD 479

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG-----ID 601
           MYAKCG ++ A+RVFD  P + +  +N +I  Y MHG   E+L LF+++  +G     + 
Sbjct: 480 MYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVK 539

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
           P  +TF  +  +CSH+G+V+EGL LF  M ++H ++P+ +H+ C+V+L+ R G ++EA  
Sbjct: 540 PTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYG 599

Query: 662 VILTMPCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
           ++ TMP   D      SLL  C   +  E+ E  +E+LLQL+PD   +YV LSN Y+++G
Sbjct: 600 LVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAG 659

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            W++   +R  MK  G++K PGCSWI+ G+E+H F+A D SHP++E+++  L  L   ++
Sbjct: 660 LWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLK 719



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 213/429 (49%), Gaps = 28/429 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ISS S+ ++  EA+  L  M     +     +  +L  C +   + TG++IHA  L+  D
Sbjct: 188 ISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDD 247

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               N +V + LV  Y  C  ++    +F  +  + +  W A+I    +    EKAL+ F
Sbjct: 248 VI-ENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLF 306

Query: 171 VEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           +EM+   G+  +   + +++ A      +     +HGYV+K G +   ++ ++LIDMY +
Sbjct: 307 IEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSR 366

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-------TLEG---- 278
            GD++ ++++FD M  R++V+WN++I  YV  G + +A+ + +EM       T +G    
Sbjct: 367 MGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYND 426

Query: 279 -----VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
                 +P  +++ ++L   A+L AL +GK+ HA A+ N +     +GS++++ Y+K G 
Sbjct: 427 EKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGC 486

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           L  A  VF +M  R+++TWN++I +Y   G+    +     DM A+  +    K    + 
Sbjct: 487 LNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESL-ELFEDMVAEGAKGGEVKPTEVTF 545

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEA 452
           I         L A+ +  G   E   LF++M+ E GI P    +  ++    R G++ EA
Sbjct: 546 I--------ALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEA 597

Query: 453 KDMFLQMQS 461
             +   M S
Sbjct: 598 YGLVNTMPS 606


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/635 (33%), Positives = 329/635 (51%), Gaps = 86/635 (13%)

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           +  M+      DNFV+P+VLKAC  +     G+ VHG+V+K GF G VFV ++LI MY +
Sbjct: 112 YAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSE 171

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
            G L  AR +FD +  ++VV+W++MI  Y ++GL +EA+ +  +M +  V+P+ + + SI
Sbjct: 172 VGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISI 231

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
               A L  L  GK  HA  + NG                                    
Sbjct: 232 THVLAELADLKLGKAMHAYVMRNG------------------------------------ 255

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                      + G+S V + ++++DMY KCE +  A++VF+ +    ++ W  ++AAY 
Sbjct: 256 -----------KCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYI 304

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LG------FLRNG------ 447
                 E  RLF +M  EG+ PN I+  S++          LG       LRNG      
Sbjct: 305 HCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLV 364

Query: 448 -------------QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
                         +  A+ +F   +S     +L+ W+ +IS   QN+C +EA   F  M
Sbjct: 365 LATAFIDMYGKCGDVRSARSVFDSFKS----KDLMMWSAMISSYAQNNCIDEAFDIFVHM 420

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
              GI+P+  T+   L  C    SL  G+ IH Y+ +  +     + TS VDMYA CG+I
Sbjct: 421 TGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDI 480

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A R+F  +  +++ ++NAMISG+AMHG    AL LF+ ++  G+ P+ ITF   L+AC
Sbjct: 481 DTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHAC 540

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
           SH+GL+ EG  LF  M  +    P +EH+GC+V+LL R G LDEA  +I +MP  P+  +
Sbjct: 541 SHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAV 600

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
            GS L+ C      +L E+ ++  L LEP   G  V +SN YA++ RW +V+ +R  MK+
Sbjct: 601 FGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKD 660

Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           +G+ K PG S I++   LH F+  DR HP  +++Y
Sbjct: 661 EGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVY 695



 Score =  211 bits (538), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 150/582 (25%), Positives = 267/582 (45%), Gaps = 77/582 (13%)

Query: 3   SFTFT-TPPNPKFSHTKPQKPLKLSQT---HLTKLRESDN-----------SYESLYKSY 47
           +  FT + P P   H + +  + L++T   H   ++ S N           SY S    +
Sbjct: 33  TLKFTQSQPKPNVPHIQQELHINLNETQQLHGHFIKTSSNCSYRVPLAALESYSSNAAIH 92

Query: 48  FHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILK 107
              I+S  K     +A  +   M+  + ++   +   +L+ C        GQ++H  ++K
Sbjct: 93  SFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVK 152

Query: 108 NGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
           NG  F  + +V   L++ Y++  +L +A  LF ++  K+V SW+ +I    R GL ++AL
Sbjct: 153 NG--FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEAL 210

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG--CVFVASSLID 225
               +M    V P    + ++      L  +  G+A+H YV++ G  G   V + ++LID
Sbjct: 211 DLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALID 270

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ-NGLNEEAIRVFYEMTLEGVEPTRV 284
           MY KC +L  AR+VFDG+   ++++W +MI  Y+  N LN E +R+F +M  EG+ P  +
Sbjct: 271 MYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLN-EGVRLFVKMLGEGMFPNEI 329

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           ++ S++       AL+ GK  HA  + NG  L  VL ++ I+ Y K G +  A  VF   
Sbjct: 330 TMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSF 389

Query: 345 VERDIVTWNLLIASYVQSG----------------------------------------- 363
             +D++ W+ +I+SY Q+                                          
Sbjct: 390 KSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGK 449

Query: 364 -----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                      + D+++ +S VDMYA C  ID A ++F     RD+ +WN +++ +A  G
Sbjct: 450 WIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHG 509

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITW 471
               A  LF +M+  G++PN I++   +     +G + E K +F +M    G  P +  +
Sbjct: 510 HGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHY 569

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
             ++  L +    +EA    + M    ++P+       L+AC
Sbjct: 570 GCMVDLLGRAGLLDEAHELIKSM---PMRPNIAVFGSFLAAC 608


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 232/816 (28%), Positives = 393/816 (48%), Gaps = 93/816 (11%)

Query: 3   SFTFTTP--PNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQI 60
           +  F  P  P     + KPQ  L LS   L           +++  +  +I SL K+   
Sbjct: 19  AIVFFNPFSPTSSIKNFKPQLHLALSHIRLNTQLAFSPCPLTVHYPHDDKIISLCKKNLH 78

Query: 61  REAVDLLTEM-KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           REA+       KC +  +    Y  L+  C   R +  G++IH  +L     +  +  ++
Sbjct: 79  REALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCN--YQPDMILQ 136

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
             ++  Y KC +L  A  +F  + +KNV SW ++I    R G  + A+  +V+M   G  
Sbjct: 137 NHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHI 196

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           PD+F   +++K+C  L      R +H +VLK  F   +   ++LI MY K   + +A  V
Sbjct: 197 PDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINV 256

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV-EPTRVSVTSILSASANLDA 298
           F  +I +++++W SMI G+ Q G   EA+  F EM  + V +P      S  SA + L  
Sbjct: 257 FSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLE 316

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
            D G+Q H + +                   K GL                         
Sbjct: 317 PDCGRQIHGLCI-------------------KFGL------------------------- 332

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                 SD+    S+ DMYAKC  +++A+ VF  I   D+V WN ++A +A +  + E+S
Sbjct: 333 -----GSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESS 387

Query: 419 RLFYQMQLEGISPNIIS-----------------------------------WNSVILGF 443
             F QM+  G+ PN ++                                    NS++  +
Sbjct: 388 SFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMY 447

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            +   +N+A  +F   + +G + ++++W TL++   Q +   E +   + M  + IKP  
Sbjct: 448 SKCSNLNDALQVF---EDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDH 504

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            T+T  L +   +AS   G  IH ++++  L L   +  +L++MY KCG++  A+++FD 
Sbjct: 505 VTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDS 564

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
             + ++  ++++I GYA  G   EA  LF+ ++  G+ P+ ITF  IL ACSH G+V EG
Sbjct: 565 IGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEG 624

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
           L+L+  M  D+++ P+ EH  C+V+LL+R G LD A   I  MP  PD  +  +LL+ C 
Sbjct: 625 LKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAACK 684

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
                E+ +  +E++L+++P N    V L N +A+SG W + +++R  M+   + K PG 
Sbjct: 685 VHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQ 744

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           SWI+I +++HVF+A D  HP+  +IY  L  L + +
Sbjct: 745 SWIEIKDKVHVFLAEDNLHPERGKIYTMLEELMLQI 780


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/677 (30%), Positives = 343/677 (50%), Gaps = 91/677 (13%)

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA 250
           AC     + + + +H +VLK  +   + + + +I+MYGKCG +++ARKVFD M   NVV+
Sbjct: 168 ACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVS 227

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           W SMI GY QNG   +AI ++ +MT  G  P +++  S++ A      +D G+Q HA  +
Sbjct: 228 WTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVI 287

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------- 363
            +         +++I+ Y+  G +E A  VF+R+  +D+++W  +I  Y+Q G       
Sbjct: 288 KSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALY 347

Query: 364 ----------------------------------------------QSDVVVASSIVDMY 377
                                                         + +V    S+ DMY
Sbjct: 348 LFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMY 407

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW- 436
           AK   + +AK  F  I   D+V WN ++AA+AD G + EA   F QM   G++P+ I++ 
Sbjct: 408 AKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYI 467

Query: 437 ----------------------------------NSVILGFLRNGQMNEAKDMFLQMQSL 462
                                             NS++  + +   +++A ++F   + +
Sbjct: 468 SLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVF---RDI 524

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
               NL++W  ++S   Q     E    ++EM  +G KP + TIT  L  C ++ SL  G
Sbjct: 525 SRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVG 584

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
             +H Y I+  L L   +   L+DMYAKCG++  A+ VFD + + ++  ++++I GYA  
Sbjct: 585 NQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQC 644

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           GL  EAL LF+ +   G+ P+ +T+   L+ACSH GLV EG  L+  M ++H + P+ EH
Sbjct: 645 GLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREH 704

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           F C+V+LL+R G L EA   I     D D     +LL+ C   N  ++AE  + ++L+L+
Sbjct: 705 FSCIVDLLARAGCLHEAETFIQKSGLDADITAWKTLLAACKTHNNVDIAERGAGNILKLD 764

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           P N    V L N +A++G W EV+++R +MK+ G++K PG SWI++ ++ H+F + D SH
Sbjct: 765 PSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMGVQKVPGQSWIEVKDKFHIFFSEDSSH 824

Query: 763 PKTEEIYATLALLGMHV 779
           P+   IY  L  L   V
Sbjct: 825 PQRNLIYTMLEELWSQV 841


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/702 (31%), Positives = 358/702 (50%), Gaps = 101/702 (14%)

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL--KVGFDG 215
           CR G  E+AL G   +  DGV  D+     VL+ C  +  +  G+  H  V    +G DG
Sbjct: 72  CRSGDLEEAL-GL--LGSDGV--DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDG 126

Query: 216 CVFV-ASSLIDMYGKCGDLEEARKVFDGMI-ARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
              V    L+ MY KCGDLE AR+VFD M    +V  W +++ GY + G   E + +F +
Sbjct: 127 MDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRK 186

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M   GV P   +++ +L   A L ++++G+  H +    G      +G++++ FY+K   
Sbjct: 187 MHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNR 246

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV------------------------ 369
            +DA +VF  M  RD+++WN +I+    +G  D  +                        
Sbjct: 247 TKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPA 306

Query: 370 ----------------------------ASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
                                       A+ ++DMY+ C    +  ++F +++ ++VV W
Sbjct: 307 CAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSW 366

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF----------------LR 445
             ++ +Y   G   + + LF +M LEG  P+I +  S +  F                +R
Sbjct: 367 TAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIR 426

Query: 446 NG-------------------QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
           NG                    M EAK +F  +    V  ++I+W TLI G ++N+  NE
Sbjct: 427 NGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGV----VSKDMISWNTLIGGYSRNNLANE 482

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           A   F EML   ++P+  T+TC L A   ++SL  GR +H Y +R        +  +L+D
Sbjct: 483 AFSLFTEML-LQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALID 541

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MY KCG +  A+R+FD   +K L  +  M++GY MHG   +A+ALF+ ++  GI PD+ +
Sbjct: 542 MYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAAS 601

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           F+ IL ACSH+GL +EG   F  M  +H+++P ++H+ C+V+LL   GNL EA   I +M
Sbjct: 602 FSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSM 661

Query: 667 PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726
           P +PD+ I  SLL  C      +LAE ++E + +LEP+N G YV L+N YA + RW  V 
Sbjct: 662 PIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVR 721

Query: 727 QVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           ++++ +  +GLR+N GCSWI+   ++HVF+A +R+HP+   I
Sbjct: 722 KLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRI 763



 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 148/520 (28%), Positives = 244/520 (46%), Gaps = 67/520 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYK-----RDMYTGQQIHARI 105
           +S  +K   +RE V L  +M C    + P+ Y      CV K       +  G+ +H  +
Sbjct: 168 MSGYAKAGDLREGVLLFRKMHC--CGVRPDAY---TISCVLKCIAGLGSIEDGEVVHGLL 222

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K G  F     V   L+ FYAK +    A  +F  +  ++V SW ++I      GL +K
Sbjct: 223 EKLG--FGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDK 280

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  FV M  +G   D+  L +VL AC  L  +  GR VHGY +K GF     +A+ L+D
Sbjct: 281 AIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLD 340

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY  C D     K+F  M+ +NVV+W +MI  Y + GL ++   +F EM LEG  P   +
Sbjct: 341 MYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFA 400

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           +TS L A A  + L  GK  H  A+ NGME    + ++++  Y K G +E+A+++F  +V
Sbjct: 401 ITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVV 460

Query: 346 ERDIVTWNLLIASY---------------------------------------VQSGQ-- 364
            +D+++WN LI  Y                                       ++ G+  
Sbjct: 461 SKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRPNAVTMTCILPAAASLSSLERGREM 520

Query: 365 ----------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
                      D  VA++++DMY KC  +  A+++F+ +  ++++ W  ++A Y   GR 
Sbjct: 521 HAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRG 580

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTT 473
            +A  LF QM++ GI+P+  S+++++     +G  +E    F  M +   ++P L  +T 
Sbjct: 581 RDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTC 640

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           ++  L       EA  F   M    I+P ++     L  C
Sbjct: 641 MVDLLINTGNLKEAYEFIDSM---PIEPDSSIWVSLLRGC 677



 Score =  212 bits (540), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 161/622 (25%), Positives = 273/622 (43%), Gaps = 97/622 (15%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
            I  L +   + EA+ LL      +  +    YG +LQ C   R +  G++ H   L   
Sbjct: 67  HIQRLCRSGDLEEALGLLG-----SDGVDDRSYGAVLQLCSEVRSLEGGKRAH--FLVRA 119

Query: 110 DFFARN---EYVETKLVVFYAKCDALDVASRLFCRL-RVKNVFSWAAIIGLNCRVGLSEK 165
               R+     +  KLV+ Y KC  L+ A R+F  + +V +V  W A++    + G   +
Sbjct: 120 SSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLRE 179

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
            ++ F +M   GV PD + +  VLK    LG +  G  VHG + K+GF     V ++L+ 
Sbjct: 180 GVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMA 239

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
            Y K    ++A  VFDGM  R+V++WNSMI G   NGL ++AI +F  M LEG E    +
Sbjct: 240 FYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSAT 299

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           + S+L A A L  L  G+  H  +V  G      L + +++ YS          +F  MV
Sbjct: 300 LLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMV 359

Query: 346 ERDIVTWNLLIASYVQSGQSDVV------------------------------------- 368
           ++++V+W  +I SY ++G  D V                                     
Sbjct: 360 QKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKS 419

Query: 369 ---------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                          V +++++MY KC  ++ AK +F+ ++ +D++ WNTL+  Y+    
Sbjct: 420 VHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNL 479

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILG----------------FLRNGQM------NE 451
           + EA  LF +M L+ + PN ++   ++                   LR G +      N 
Sbjct: 480 ANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANA 538

Query: 452 AKDMFLQMQSLGV---------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
             DM+++  +L +           NLI+WT +++G   +  G +AI  F++M  +GI P 
Sbjct: 539 LIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPD 598

Query: 503 TTTITCALSACTDVASLRNG-RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
             + +  L AC+       G R        H +       T +VD+    GN+ +A    
Sbjct: 599 AASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFI 658

Query: 562 DISP-SKELPVYNAMISGYAMH 582
           D  P   +  ++ +++ G  +H
Sbjct: 659 DSMPIEPDSSIWVSLLRGCRIH 680



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 221/433 (51%), Gaps = 21/433 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  +      +A++L   M     ++       +L  C     ++ G+ +H   
Sbjct: 264 SWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYS 323

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K G  F     +   L+  Y+ C      +++F  +  KNV SW A+I    R GL +K
Sbjct: 324 VKTG--FISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDK 381

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
               F EM  +G  PD F + + L A      +  G++VHGY ++ G +  + V ++L++
Sbjct: 382 VAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALME 441

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY KCG++EEA+ +FDG++++++++WN++I GY +N L  EA  +F EM L+ + P  V+
Sbjct: 442 MYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVT 500

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           +T IL A+A+L +L+ G++ HA A+  G   D+ + +++I+ Y K G L  A  +F R+ 
Sbjct: 501 MTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLS 560

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
            +++++W +++A Y   G+    +A                +Q+  S I  D   ++ +L
Sbjct: 561 NKNLISWTIMVAGYGMHGRGRDAIAL--------------FEQMRVSGIAPDAASFSAIL 606

Query: 406 AAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
            A +  G   E  R F  M+ E  I P +  +  ++   +  G + EA +    + S+ +
Sbjct: 607 YACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEF---IDSMPI 663

Query: 465 QPNLITWTTLISG 477
           +P+   W +L+ G
Sbjct: 664 EPDSSIWVSLLRG 676


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/724 (31%), Positives = 402/724 (55%), Gaps = 24/724 (3%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           Q+  L    ++ EA+ LL  M+     +  +++  L++ C +KR    G ++++  L + 
Sbjct: 65  QLHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSM 124

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
                   +    +  + +   L  A  +F ++  +N+FSW  ++G   + G  ++A+  
Sbjct: 125 SSLGVE--LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCL 182

Query: 170 FVEM-QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
           +  M    GV PD +  P VL+ CG +  +  G+ VH +V++ G++  + V ++LI MY 
Sbjct: 183 YHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYV 242

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCGD++ AR +FD M  R++++WN+MI GY +NG+  E + +F+ M    V+P  +++TS
Sbjct: 243 KCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTS 302

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
           ++SA   L     G+  HA  +  G  +D  + +S+   Y   G   +AE +FSRM  +D
Sbjct: 303 VISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKD 362

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           IV+W  +I+ Y  +   D       +D Y    R+ +   V    I    VL  +  A  
Sbjct: 363 IVSWTTMISGYEYNFLPD-----KAIDTY----RMMDQDSVKPDEITVAAVL--SACATL 411

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
            DL    E  +L  + +L  IS  I++ N++I  + +   +++A D+F  +     + N+
Sbjct: 412 GDLDTGVELHKLAIKARL--ISYVIVA-NNLINMYSKCKCIDKALDIFHNIP----RKNV 464

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           I+WT++I+GL  N+   EA++F ++M  T ++P+  T+T AL+AC  + +L  G+ IH +
Sbjct: 465 ISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAH 523

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           ++R  + L   +  +L+DMY +CG ++ A   F+ S  K++  +N +++GY+  G     
Sbjct: 524 VLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFN-SQKKDVTSWNILLTGYSERGQGSMV 582

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           + LF  + +  + PD ITF ++L  CS + +V +GL  F  M  D+ V P+++H+ CVV+
Sbjct: 583 VELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVD 641

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL R G L EA + I  MP  PD  + G+LL+ C   ++ +L E  ++H+ +L+  + G 
Sbjct: 642 LLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGY 701

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           Y+ L N YA  G+W EV++VR +MKE GL  + GCSW+++  ++H F++ D+ HP+T+EI
Sbjct: 702 YILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEI 761

Query: 769 YATL 772
              L
Sbjct: 762 NTVL 765


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 232/816 (28%), Positives = 393/816 (48%), Gaps = 93/816 (11%)

Query: 3   SFTFTTP--PNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQI 60
           +  F  P  P     + KPQ  L LS   L           +++  +  +I SL K+   
Sbjct: 19  AIVFFNPFSPTSSIKNFKPQLHLALSHIRLNTQLAFSPCPLTVHYPHDDKIISLCKKNLH 78

Query: 61  REAVDLLTEM-KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           REA+       KC +  +    Y  L+  C   R +  G++IH  +L     +  +  ++
Sbjct: 79  REALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCN--YQPDMILQ 136

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
             ++  Y KC +L  A  +F  + +KNV SW ++I    R G  + A+  +V+M   G  
Sbjct: 137 NHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHI 196

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           PD+F   +++K+C  L      R +H +VLK  F   +   ++LI MY K   + +A  V
Sbjct: 197 PDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINV 256

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV-EPTRVSVTSILSASANLDA 298
           F  +I +++++W SMI G+ Q G   EA+  F EM  + V +P      S  SA + L  
Sbjct: 257 FSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLE 316

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
            D G+Q H + +                   K GL                         
Sbjct: 317 PDCGRQIHGLCI-------------------KFGL------------------------- 332

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                 SD+    S+ DMYAKC  +++A+ VF  I   D+V WN ++A +A +  + E+S
Sbjct: 333 -----GSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESS 387

Query: 419 RLFYQMQLEGISPNIIS-----------------------------------WNSVILGF 443
             F QM+  G+ PN ++                                    NS++  +
Sbjct: 388 SFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMY 447

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            +   +N+A  +F   + +G + ++++W TL++   Q +   E +   + M  + IKP  
Sbjct: 448 SKCSNLNDALQVF---EDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDH 504

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            T+T  L +   +AS   G  IH ++++  L L   +  +L++MY KCG++  A+++FD 
Sbjct: 505 VTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDS 564

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
             + ++  ++++I GYA  G   EA  LF+ ++  G+ P+ ITF  IL ACSH G+V EG
Sbjct: 565 IGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEG 624

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
           L+L+  M  D+++ P+ EH  C+V+LL+R G LD A   I  MP  PD  +  +LL+ C 
Sbjct: 625 LKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACK 684

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
                E+ +  +E++L+++P N    V L N +A+SG W + +++R  M+   + K PG 
Sbjct: 685 VHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQ 744

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           SWI+I +++HVF+A D  HP+  +IY  L  L + +
Sbjct: 745 SWIEIKDKVHVFLAEDNLHPERGKIYTMLEELMLQI 780


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 231/772 (29%), Positives = 376/772 (48%), Gaps = 96/772 (12%)

Query: 43  LYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIH 102
           L+ S+  + +S   +    E +++  E+  +  +   +    +L+ C+   +++ G ++H
Sbjct: 97  LWNSFLEEFASFGGDSH--EILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVH 154

Query: 103 ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL 162
           A +LK G  F  + ++   L+  Y KC  +D A+++F    ++  F W  I+  N R   
Sbjct: 155 ACLLKRG--FQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSER 212

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
            E AL     MQ       +  +  +L+ACG L  +  G+ +HGYV++ G      + +S
Sbjct: 213 WEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNS 272

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-------- 274
           ++ MY +   LE AR VFD     N+ +WNS+I  Y  NG    A  +F EM        
Sbjct: 273 IVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPD 332

Query: 275 -------------------------TLE--GVEPTRVSVTSILSASANLDALDEGKQAHA 307
                                    +L+  G +P   S+TS L A   L   + GK+ H 
Sbjct: 333 IITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHG 392

Query: 308 VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
             + + +E D  + +S+++ Y K   LE AEVVF     ++I  WN LI+ Y   G    
Sbjct: 393 YIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKG---- 448

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
                           DNA+++   +    I  D+V WN+L++ Y+  G S EA  +  +
Sbjct: 449 --------------LFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINR 494

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           ++  G++PN++SW ++I G  +N    +A   F QMQ   V+PN                
Sbjct: 495 IKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPN---------------- 538

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
                              +TTI+  L AC   + L+ G  IH + ++H       I T+
Sbjct: 539 -------------------STTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATA 579

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+DMY+K G +  A  VF     K LP +N M+ GYA++G   E   LF N+ + GI PD
Sbjct: 580 LIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPD 639

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
           +ITFT +L+ C ++GLV +G + F  M +D+ + P++EH+ C+V+LL + G LDEAL  I
Sbjct: 640 AITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFI 699

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             MP   DA I G++L+ C    + ++AE  + +L +LEP N  NYV + N Y+   RW 
Sbjct: 700 HAMPQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWG 759

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           +V ++++ M   G++     SWIQ+ + +HVF    +SHP+  EIY  L  L
Sbjct: 760 DVERLKESMTAMGVKIPNVWSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQL 811



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 159/608 (26%), Positives = 286/608 (47%), Gaps = 45/608 (7%)

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG-CVF 218
           +G SE  ++   +      SP  F  P      G +  +   R +H  ++K+   G  V 
Sbjct: 13  LGTSETQIVSSPQFSSPKFSP--FFHP-----LGGIRTLNSVRELHAQMIKMPKKGNLVT 65

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ-NGLNEEAIRVFYEMTLE 277
           +  S++  Y + GD E A KVF    ARN + WNS +  +    G + E + VF E+  +
Sbjct: 66  MDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDK 125

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           GV+    ++T +L     L  L  G + HA  +  G ++D  L  ++IN Y K   ++ A
Sbjct: 126 GVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRA 185

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQ--------------SDVVVASSIVDMYAKCERI 383
             VF     ++   WN ++ + ++S +              S      +IV +   C ++
Sbjct: 186 NQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKL 245

Query: 384 ---DNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
              +  KQ+   +I    + +  + N++++ Y+   R   A  +F   +      N+ SW
Sbjct: 246 RALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTE----DHNLASW 301

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG-LTQNSCGNEAILFFQEML 495
           NS+I  +  NG +N A D+F +M+S  ++P++ITW +L+SG L Q S  N  +   + + 
Sbjct: 302 NSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYEN-VLTNIRSLQ 360

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
             G KP + +IT AL A  ++     G+ IHGY++R  L     + TSLVDMY K   + 
Sbjct: 361 SAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLE 420

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           +A+ VF  + +K +  +N++ISGY   GL   A  L   ++++GI  D +T+ ++++  S
Sbjct: 421 KAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYS 480

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP---CDPDA 672
            +G   E L + +       + P++  +  +++   +  N  +AL+    M      P++
Sbjct: 481 MSGCSEEALAV-INRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNS 539

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEP---DNPGNYVALSNAYAASGRWNEVSQVR 729
             I +LL  C   +  +  E I  H   ++    D+     AL + Y+  G+     +V 
Sbjct: 540 TTISTLLRACAGPSLLKKGEEI--HCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVF 597

Query: 730 DIMKEKGL 737
             +KEK L
Sbjct: 598 RNIKEKTL 605


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 211/604 (34%), Positives = 326/604 (53%), Gaps = 62/604 (10%)

Query: 209 LKVGFDGCVFVASSLID---MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
           +K+G     +  S L+D   +      L  A  VF  +   N ++WN+MI G+  +    
Sbjct: 1   IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
            A+ ++  M   G+ P   +   +  + A   A  EGKQ HA  +  G+ +D  + +S+I
Sbjct: 61  SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDN 385
           + Y++ G++EDA  VF     RD+V++  +I  Y   G                   +D 
Sbjct: 121 SMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGN------------------MDK 162

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------------- 432
           A+++F+ I ++DVV WN +++ YA++GR  EA  LF +M    + P+             
Sbjct: 163 AQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTH 222

Query: 433 ---------IISW-------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
                    I SW             N++I  + + G+M  A  +F  +Q      ++I+
Sbjct: 223 SGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQ----YKDVIS 278

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W TLI G    +   EA+L FQEML+ G  P+  T+   L AC  + ++  GR IH Y+ 
Sbjct: 279 WNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYID 338

Query: 531 RH--DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +    +   T + TSL+DMYAKCGNI  A +VFD   +K L   NAMI G+AMHG A  A
Sbjct: 339 KKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAA 398

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
             L   +++ GI+PD ITF  +L+ACSHAGL + G ++F  M  D++++P +EH+GC+++
Sbjct: 399 FDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMID 458

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL R G   EA  +I +M  +PD  I GSLL  C      EL E I++ L+++EP NPG+
Sbjct: 459 LLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGS 518

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YV LSN YA S RW++V++VR ++ +KGL+K PGCS I+I   +H F+  D+ HP+ +EI
Sbjct: 519 YVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEI 578

Query: 769 YATL 772
           Y  L
Sbjct: 579 YKML 582



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 210/425 (49%), Gaps = 49/425 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNG------------DFFARNEYVE------------- 119
           L + C   +    G+QIHA+ILK G              +A+N  VE             
Sbjct: 84  LFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRD 143

Query: 120 ----TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
               T ++  YA    +D A ++F  + +K+V SW A+I     +G  ++AL  F EM +
Sbjct: 144 VVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMK 203

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
             V PD   +  VL  C   G V  GR +H ++   GF   + + ++LID+Y KCG++E 
Sbjct: 204 MDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMER 263

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A  +F+G+  ++V++WN++I GY     ++EA+ VF EM   G  P  V++ SIL A A+
Sbjct: 264 AHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAH 323

Query: 296 LDALDEGKQAHAV--AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           L A+D G+  H      + G+  +  L +S+I+ Y+K G +E A  VF  ++ + + + N
Sbjct: 324 LGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCN 383

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
            +I  +   G++D        D+ ++ ++           I  D + +  LL+A +  G 
Sbjct: 384 AMIFGFAMHGRADAA-----FDLLSRMKK---------DGIEPDDITFVGLLSACSHAGL 429

Query: 414 SGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
           S    ++F  M L+  I P +  +  +I    R+G   EA+++   + S+ ++P+ + W 
Sbjct: 430 SDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEEL---INSMTMEPDGVIWG 486

Query: 473 TLISG 477
           +L+  
Sbjct: 487 SLLKA 491



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 168/322 (52%), Gaps = 16/322 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++  + +EA++L  EM   + +        +L  C +  ++  G+QIH+ I
Sbjct: 177 SWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWI 236

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             +G  F  N  +   L+  Y+KC  ++ A  LF  L+ K+V SW  +IG    +   ++
Sbjct: 237 DNHG--FGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKE 294

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSL 223
           AL+ F EM + G +P++  + ++L AC  LG +  GR +H Y+ K   G      + +SL
Sbjct: 295 ALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSL 354

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           IDMY KCG++E A +VFD ++ +++ + N+MI G+  +G  + A  +   M  +G+EP  
Sbjct: 355 IDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDD 414

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDA 337
           ++   +LSA ++    D G++     +   M LD  +   +      I+   + GL ++A
Sbjct: 415 ITFVGLLSACSHAGLSDLGRK-----IFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEA 469

Query: 338 EVVFSRM-VERDIVTWNLLIAS 358
           E + + M +E D V W  L+ +
Sbjct: 470 EELINSMTMEPDGVIWGSLLKA 491



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 127/516 (24%), Positives = 220/516 (42%), Gaps = 90/516 (17%)

Query: 131 ALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLK 190
            L  A  +F  ++  N  SW  +I  +        AL  +V M   G+SP+++  P + K
Sbjct: 27  GLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFK 86

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD--------- 241
           +C        G+ +H  +LK G    + V +SLI MY + G +E+A KVFD         
Sbjct: 87  SCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVS 146

Query: 242 --GMIA--------------------RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
              MI                     ++VV+WN+MI GY + G  +EA+ +F EM    V
Sbjct: 147 YTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDV 206

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           +P   ++ ++LS   +   ++ G+Q H+    +G   +  L +++I+ YSK G +E A  
Sbjct: 207 KPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHG 266

Query: 340 VFSRMVERDIVTWNLLIASY----------------VQSGQS--DVVVAS---------- 371
           +F  +  +D+++WN LI  Y                ++ G++  DV + S          
Sbjct: 267 LFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326

Query: 372 --------------------------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                                     S++DMYAKC  I+ A QVF++I+ + +   N ++
Sbjct: 327 IDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMI 386

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGV 464
             +A  GR+  A  L  +M+ +GI P+ I++  ++      G  +  + +F  M     +
Sbjct: 387 FGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRI 446

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
           +P L  +  +I  L ++    EA      M    ++P        L AC    +L  G  
Sbjct: 447 EPKLEHYGCMIDLLGRSGLFKEAEELINSMT---MEPDGVIWGSLLKACKIHKNLELGEL 503

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           I   L++ +   P   V  L ++YA         RV
Sbjct: 504 IAQKLMKIEPKNPGSYVL-LSNIYATSARWDDVARV 538


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 200/570 (35%), Positives = 333/570 (58%), Gaps = 31/570 (5%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G + +AR++FDGM  R+VV+W +M+  Y + G+ +EA RV ++          V+ T++L
Sbjct: 55  GRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEA-RVLFDRP--DARRNVVTWTALL 111

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDI 349
           S  A    +DE     A A+  GM   NV+  ++++  Y+ VG +EDA  +F+RM  RD 
Sbjct: 112 SGYARARRVDE-----AEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDA 166

Query: 350 VTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
            +WN+L+   V+SG               DV+  ++++   A+   +D+A  +F+++  R
Sbjct: 167 GSWNILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPER 226

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           +VV WN +++ YA   R  EA  LF +M +     ++ SWN +I GF++N  +  A+ +F
Sbjct: 227 NVVSWNAMISGYARNHRIEEALDLFTKMPIR----DVASWNIMITGFIQNKDLKSARQLF 282

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            +M     + N+ITWTT+++G  Q      A+  F  ML  GI+P+  T   +L AC+++
Sbjct: 283 DEMP----KRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNL 338

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           A+L  G+ +H  + +      T + ++L+++YAKCG I  A+ VFD S  K+L  +N +I
Sbjct: 339 AALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGII 398

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           + YA HG  +EA+ L+KN+Q+ G  P+  T+  +L+ACSHAGLV+EGL++F  M  D+ +
Sbjct: 399 AAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSI 458

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS-LLSTCVKSNETELAEYIS 695
               EH+ C+V+L SR G L++A R+I      P +  + S LL  C       + +  +
Sbjct: 459 VVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAA 518

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           +HLL+ EPDN G Y  L N YA++G+W E +++R  M  +GL+K PGCSWI++  ++HVF
Sbjct: 519 KHLLEAEPDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVANKVHVF 578

Query: 756 VACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           V+ D+SH +++ I   L  +   +R+   V
Sbjct: 579 VSRDKSHSESDLINDLLQDIHRIMRMAGTV 608



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 131/556 (23%), Positives = 259/556 (46%), Gaps = 94/556 (16%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A RLF  +  ++V SW A++    R G+ ++A + F         PD     NV+     
Sbjct: 60  ARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDR-------PD--ARRNVVTWTAL 110

Query: 195 LGWVGFGRAVHGYVLKVGFDGC----VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA 250
           L   G+ RA      +  F+G     V   +++++ Y   G +E+A  +F+ M  R+  +
Sbjct: 111 LS--GYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGS 168

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           WN ++ G V++G  E A ++F  M +  V    +S T+++S  A   ++D+     A  +
Sbjct: 169 WNILLCGLVRSGSLERARKMFERMPVRDV----MSWTTMISGLARNGSVDD-----AWVL 219

Query: 311 INGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV 369
            + M   NV+  +++I+ Y++   +E+A  +F++M  RD+ +WN++I  ++Q+       
Sbjct: 220 FDAMPERNVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQN------- 272

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
                      + + +A+Q+F+ +  R+V+ W T++  Y    +S  A +LF  M ++GI
Sbjct: 273 -----------KDLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGI 321

Query: 430 SPNIISW-----------------------------------NSVILGFLRNGQMNEAKD 454
            PN +++                                   ++++  + + G++  A++
Sbjct: 322 QPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARN 381

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F       ++ +LI+W  +I+    +  G EA+  ++ M E G KP+  T    LSAC+
Sbjct: 382 VF----DFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACS 437

Query: 515 DVASLRNGRAIHGYLIRHD-LCLPTPIVTSLVDMYAKCGNIHQAKRV---FDISPSKELP 570
               +  G  I   +++ + + +     T LVD+ ++ G +  AKR+   F I P+    
Sbjct: 438 HAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSS-T 496

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI-TFTNILNACSHAGLVNEGLELFVG 629
           V++A++ G   HG         K+L +   +PD+  T+T + N  + AG   E  E+   
Sbjct: 497 VWSALLGGCNSHGNESIGDLAAKHLLEA--EPDNAGTYTLLCNIYASAGKWKEAAEI--- 551

Query: 630 MFSDHQVKPSMEHFGC 645
             S+  V+   +  GC
Sbjct: 552 -RSEMNVRGLKKQPGC 566



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 133/498 (26%), Positives = 215/498 (43%), Gaps = 67/498 (13%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G    AR+L +     RN    T L+  YA+   +D A  LF  +  +NV SW  ++   
Sbjct: 86  GMLQEARVLFDRPDARRNVVTWTALLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAY 145

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
             VG  E A   F  M        N +L      CG +      RA   +      D  V
Sbjct: 146 TAVGRVEDASALFNRMPVRDAGSWNILL------CGLVRSGSLERARKMFERMPVRD--V 197

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
              +++I    + G +++A  +FD M  RNVV+WN+MI GY +N   EEA+ +F +M + 
Sbjct: 198 MSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNAMISGYARNHRIEEALDLFTKMPIR 257

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLED 336
            V    + +T  +    N D L   +Q     + + M   NV+  ++++N Y +    E 
Sbjct: 258 DVASWNIMITGFIQ---NKD-LKSARQ-----LFDEMPKRNVITWTTMMNGYLQCMQSEM 308

Query: 337 AEVVFSRMVERDI----VTW--------NLLIASYVQS---------GQSDVVVASSIVD 375
           A  +F+ M+ + I    VT+        NL      Q           Q D  V S++++
Sbjct: 309 ALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMN 368

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
           +YAKC  I  A+ VF+  + +D++ WN ++AAYA  G   EA  L+  MQ  G  PN  +
Sbjct: 369 LYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDAT 428

Query: 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT-----WTTLISGLTQNSCGNEA--- 487
           +  ++      G ++E   +F  M    V+ N I      +T L+   ++     +A   
Sbjct: 429 YVGLLSACSHAGLVDEGLKIFESM----VKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRL 484

Query: 488 ILFFQEMLETGIKPSTTTITCA-LSACTDVASLRNGRAIHGYLIRHDLCLPTP----IVT 542
           I +F+      IKP+++T+  A L  C       +G    G L    L    P      T
Sbjct: 485 ISWFK------IKPTSSTVWSALLGGCNS-----HGNESIGDLAAKHLLEAEPDNAGTYT 533

Query: 543 SLVDMYAKCGNIHQAKRV 560
            L ++YA  G   +A  +
Sbjct: 534 LLCNIYASAGKWKEAAEI 551



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 165/390 (42%), Gaps = 65/390 (16%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++  +I EA+DL T+M  R+       +  ++ G +  +D+ + +Q     
Sbjct: 230 SWNAMISGYARNHRIEEALDLFTKMPIRDVAS----WNIMITGFIQNKDLKSARQ----- 280

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
                                           LF  +  +NV +W  ++    +   SE 
Sbjct: 281 --------------------------------LFDEMPKRNVITWTTMMNGYLQCMQSEM 308

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  F  M   G+ P+       L AC  L  +  G+ VH  + K       FV S+L++
Sbjct: 309 ALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMN 368

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y KCG++  AR VFD  + +++++WN +I  Y  +G   EA+ ++  M   G +P   +
Sbjct: 369 LYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDAT 428

Query: 286 VTSILSASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS-- 342
              +LSA ++   +DEG K   ++   N + + +   + +++  S+ G LEDA+ + S  
Sbjct: 429 YVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISWF 488

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC---ERIDNAKQVFNSIILRDVV 399
           ++       W+ L+      G        SI D+ AK       DNA             
Sbjct: 489 KIKPTSSTVWSALLGGCNSHGN------ESIGDLAAKHLLEAEPDNAGT----------- 531

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
            +  L   YA  G+  EA+ +  +M + G+
Sbjct: 532 -YTLLCNIYASAGKWKEAAEIRSEMNVRGL 560



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 167/396 (42%), Gaps = 55/396 (13%)

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           A   R+ +A+++F+ +  RDVV W  ++AAYA  G   EA  LF +        N+++W 
Sbjct: 52  AAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDR---PDARRNVVTWT 108

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           +++ G+ R  +++EA+ +F  M     + N+++W T++   T      +A   F  M   
Sbjct: 109 ALLSGYARARRVDEAEALFEGM----AERNVVSWNTMLEAYTAVGRVEDASALFNRM-PV 163

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
               S   + C L       SL   R +   +   D+   T +++ L    A+ G++  A
Sbjct: 164 RDAGSWNILLCGL---VRSGSLERARKMFERMPVRDVMSWTTMISGL----ARNGSVDDA 216

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL----------------QQKGID 601
             +FD  P + +  +NAMISGYA +    EAL LF  +                Q K + 
Sbjct: 217 WVLFDAMPERNVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLK 276

Query: 602 P-----------DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
                       + IT+T ++N           L+LF  M     ++P+   F   +  L
Sbjct: 277 SARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLV-QGIQPNQVTF---LGSL 332

Query: 651 SRCGNL------DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
             C NL       +  ++I   P   D  +  +L++   K  E  LA  + +  ++ +  
Sbjct: 333 DACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLI 392

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
           +    +A   AYA  G   E   +   M+E G + N
Sbjct: 393 SWNGIIA---AYAHHGFGIEAMHLYKNMQENGYKPN 425


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 205/636 (32%), Positives = 353/636 (55%), Gaps = 19/636 (2%)

Query: 146  NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
            +V  W   +    + G + +A+  FV+M    V+ D      +L     L  +  G+ +H
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 206  GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
            G V++ G D  V V + LI+MY K G +  AR VF  M   ++++WN+MI G   +GL E
Sbjct: 959  GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEE 1018

Query: 266  EAIRVFYEMTLEGVEPTRVSVTSILSASANLDA-LDEGKQAHAVAVINGMELDNVLGSSI 324
             ++ +F  +  + + P + +V S+L A ++L+       Q HA A+  G+ LD+ + +++
Sbjct: 1019 CSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTAL 1078

Query: 325  INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
            I+ YSK G +E+AE +F      D+ +WN ++  Y+ SG     +   I+ M    ER D
Sbjct: 1079 IDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYIL-MQESGERSD 1137

Query: 385  NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
                         + L N   AA   +G   +  ++   +   G + ++   + V+  +L
Sbjct: 1138 Q------------ITLVNAAKAAGGLVGLK-QGKQIHAVVVKRGFNLDLFVTSGVLDMYL 1184

Query: 445  RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
            + G+M  A+ +F ++ S    P+ + WTT+ISG  +N     A+  + +M  + ++P   
Sbjct: 1185 KCGEMESARRVFSEIPS----PDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEY 1240

Query: 505  TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
            T    + AC+ + +L  GR IH  +++ +      ++TSLVDMYAKCGNI  A+ +F  +
Sbjct: 1241 TFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRT 1300

Query: 565  PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
             ++ +  +NAMI G A HG A EAL  FK ++ +G+ PD +TF  +L+ACSH+GLV+E  
Sbjct: 1301 NTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAY 1360

Query: 625  ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
            E F  M  ++ ++P +EH+ C+V+ LSR G ++EA +VI +MP +  A +  +LL+ C  
Sbjct: 1361 ENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRV 1420

Query: 685  SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
              + E  + ++E LL LEP +   YV LSN YAA+ +W  V+  R++M++  ++K+PG S
Sbjct: 1421 QVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFS 1480

Query: 745  WIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            W+ +  ++H+FVA DRSH +T+ IY  +  +   +R
Sbjct: 1481 WVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIR 1516



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 170/646 (26%), Positives = 285/646 (44%), Gaps = 86/646 (13%)

Query: 85   LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
            +L+  +   D+  G++ HARIL +G    R  +V   L+  YAKC +L  A +LF     
Sbjct: 662  ILRQAIAASDLSLGKRAHARILTSGHHPDR--FVTNNLITMYAKCGSLSSARKLFDTTPD 719

Query: 145  KN--VFSWAAII-GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
             N  + +W AI+  L      S      F  ++   VS     L  V K C         
Sbjct: 720  TNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSAS 779

Query: 202  RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             ++HGY +K+G    VFVA +L+++Y K G + EAR +FDGM  R+VV WN M+  YV  
Sbjct: 780  ESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDT 839

Query: 262  GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
             L  EA+ +F E    G  P  V++ ++         + E KQ  A A    M  D+  G
Sbjct: 840  CLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDD--G 897

Query: 322  SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
            S                         D++ WN  ++ ++Q G++               E
Sbjct: 898  S-------------------------DVIVWNKALSRFLQRGEA--------------WE 918

Query: 382  RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
             +D    + NS +  D + +  +L   A L       ++   +   G+   +   N +I 
Sbjct: 919  AVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLIN 978

Query: 442  GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
             +++ G ++ A+ +F QM  +    +LI+W T+ISG T +     ++  F  +L   + P
Sbjct: 979  MYVKAGSVSRARSVFGQMNEV----DLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLP 1034

Query: 502  STTTITCALSACTDVASLRNG----RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
               T+   L AC+   SL  G      IH   ++  + L + + T+L+D+Y+K G + +A
Sbjct: 1035 DQFTVASVLRACS---SLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEA 1091

Query: 558  KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS-- 615
            + +F      +L  +NA++ GY + G   +AL L+  +Q+ G   D IT  N   A    
Sbjct: 1092 EFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGL 1151

Query: 616  ---------HAGLVNEG--LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
                     HA +V  G  L+LFV                 V+++  +CG ++ A RV  
Sbjct: 1152 VGLKQGKQIHAVVVKRGFNLDLFVT--------------SGVLDMYLKCGEMESARRVFS 1197

Query: 665  TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
             +P  PD     +++S CV++ + E A + + H ++L    P  Y 
Sbjct: 1198 EIP-SPDDVAWTTMISGCVENGQEEHALF-TYHQMRLSKVQPDEYT 1241



 Score =  179 bits (454), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 17/365 (4%)

Query: 96   YTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
            Y   QIHA  +K G     + +V T L+  Y+K   ++ A  LF      ++ SW AI+ 
Sbjct: 1054 YLATQIHACAMKAGVVL--DSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMH 1111

Query: 156  LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
                 G   KAL  ++ MQE G   D   L N  KA G L  +  G+ +H  V+K GF+ 
Sbjct: 1112 GYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNL 1171

Query: 216  CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
             +FV S ++DMY KCG++E AR+VF  + + + VAW +MI G V+NG  E A+  +++M 
Sbjct: 1172 DLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMR 1231

Query: 276  LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            L  V+P   +  +++ A + L AL++G+Q HA  V      D  + +S+++ Y+K G +E
Sbjct: 1232 LSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIE 1291

Query: 336  DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
            DA  +F R   R I +WN +I    Q G +               E +   K + +  ++
Sbjct: 1292 DARGLFKRTNTRRIASWNAMIVGLAQHGNAK--------------EALQFFKYMKSRGVM 1337

Query: 396  RDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKD 454
             D V +  +L+A +  G   EA   FY MQ   GI P I  ++ ++    R G++ EA+ 
Sbjct: 1338 PDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEK 1397

Query: 455  MFLQM 459
            +   M
Sbjct: 1398 VISSM 1402



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 3/194 (1%)

Query: 51   ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
            IS   +  Q   A+    +M+    Q     +  L++ C     +  G+QIHA I+K   
Sbjct: 1211 ISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNC 1270

Query: 111  FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
             F  + +V T LV  YAKC  ++ A  LF R   + + SW A+I    + G +++AL  F
Sbjct: 1271 AF--DPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFF 1328

Query: 171  VEMQEDGVSPDNFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDGCVFVASSLIDMYGK 229
              M+  GV PD      VL AC   G V       +      G +  +   S L+D   +
Sbjct: 1329 KYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSR 1388

Query: 230  CGDLEEARKVFDGM 243
             G +EEA KV   M
Sbjct: 1389 AGRIEEAEKVISSM 1402


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 225/670 (33%), Positives = 344/670 (51%), Gaps = 99/670 (14%)

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H  VLK GFD  +F+ ++LI++Y + GD   ARK+FD M  RN V W  +I GY QNG+ 
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSA-SANLDALDEGKQAHAVAVINGMELDNV-LGS 322
           E+A  V  EM  EG  P R +  S + A   ++    +G+Q H  A+  G+    V +G+
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS-------------------- 362
            +IN Y+K G ++ A  VF  MV++D V+WN +I    Q+                    
Sbjct: 143 GLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMP 202

Query: 363 --------------------GQS------------DVVVASSIVDMYAKCERIDNAKQVF 390
                               GQ             DV V+++++ +YA+  R+   ++VF
Sbjct: 203 SNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVF 262

Query: 391 NSIILRDVVLWNTLLAAYADLGRS-GEASRLFYQMQLEGISPNIISW------------- 436
           + ++ RD V WNT++ A AD G S  EA  +F +M   G SPN +++             
Sbjct: 263 SWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTS 322

Query: 437 ----------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
                                 N+++  + ++G+M   +++F +M     + + ++W ++
Sbjct: 323 KLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSE---RRDEVSWNSM 379

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           ISG   N    +A+     M++ G +    T    LSAC  VA+L  G  +H   IR   
Sbjct: 380 ISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIR--A 437

Query: 535 CLPTPIV--TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
           CL + +V  ++LVDMY+KCG I  A R F++ P + L  +N+MISGYA HG    AL LF
Sbjct: 438 CLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLF 497

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
             ++  G  PD ITF  +L+ACSH GLV+EG E F  M   + + P +EH+ C+V+LL R
Sbjct: 498 TRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGR 557

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN--ETELAEYISEHLLQLEPDNPGNYV 710
            G LD+    I  MP  P+  I  ++L  C + N  +TEL    +E L  ++P N  NYV
Sbjct: 558 AGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYV 617

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            LSN YA+ G+W ++++ R  M+E  ++K  GCSW+ + + +HVFVA D SHP+   IYA
Sbjct: 618 LLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYA 677

Query: 771 TLALLGMHVR 780
            L  L   +R
Sbjct: 678 KLKELDKKIR 687



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 24/250 (9%)

Query: 34  RESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKR 93
           R  + S+ S+   Y H        + + +A+DL+  M  R  ++    +  +L  C    
Sbjct: 370 RRDEVSWNSMISGYIHN-------ELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVA 422

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
            +  G ++HA  ++       +  + + LV  Y+KC  +D ASR F  + V+N++SW ++
Sbjct: 423 TLECGMEVHACAIRA--CLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSM 480

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-------RAVHG 206
           I    R G  + AL  F  M+  G  PD+     VL AC  +G V  G         V+G
Sbjct: 481 ISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYG 540

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQ-NGLN 264
            V +V    C      ++D+ G+ G+L++     + M I  N++ W +++    + NG  
Sbjct: 541 LVPRVEHYSC------MVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRK 594

Query: 265 EEAIRVFYEM 274
            E  R   EM
Sbjct: 595 TELGRRAAEM 604


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 229/745 (30%), Positives = 365/745 (48%), Gaps = 104/745 (13%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF-- 139
           +  LL+ C+  R    G+ +HAR+++       +  +   L+  Y+K   L  A  +F  
Sbjct: 65  FSSLLKSCIRARHFRLGKLVHARLIEFE--IEPDSVLYNSLISLYSKSGDLTKAKDVFET 122

Query: 140 -CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
             R   ++V SW+A++      G    A+  FVE  E G+ P+++    V++AC    +V
Sbjct: 123 MGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFV 182

Query: 199 GFGRAVHGYVLKVG-FDGCVFVASSLIDMYGKC-GDLEEARKVFDGMIARNVVAWNSMIV 256
           G GR + G+++K G F+  V V  SLIDM+ K     E A KVFD M   NVV W  MI 
Sbjct: 183 GVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMIT 242

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
             +Q G   EAIR F +M L G E  + +++S+ SA A                    EL
Sbjct: 243 RCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACA--------------------EL 282

Query: 317 DNV-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVD 375
           +N+ LG  + ++  + GL +D E                                 S+VD
Sbjct: 283 ENLSLGRQLHSWAIRSGLADDVEC--------------------------------SLVD 310

Query: 376 MYAKCE---RIDNAKQVFNSIILRDVVLWNTLLAAY-ADLGRSGEASRLFYQMQLEG-IS 430
           MYAKC     +D+ ++VF+ +    V+ W  L+  Y  +   + EA  LF +M  +G + 
Sbjct: 311 MYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNCNLATEAINLFSEMITQGHVE 370

Query: 431 PNIISWNSV---------------ILG--------------------FLRNGQMNEAKDM 455
           PN  +++S                +LG                    F++  +M +A+  
Sbjct: 371 PNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTA 430

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F  +     + NL+++ T + G  +N     A     E+ E  +  S  T    LS   +
Sbjct: 431 FESLS----EKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFASLLSGVAN 486

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           V SLR G  IH  +++  L    P+  +L+ MY+KCG+I  A RVF +  ++ +  + +M
Sbjct: 487 VGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFSLMDNRNVISWTSM 546

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I+G+A HG A   L  F  + ++G+ P+ +T+  IL+ACSH GLV+EG   F  M+ DH+
Sbjct: 547 ITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHK 606

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           +KP MEH+ C+V+LL R G L +A   I TMP   D  +  + L  C   + TEL +  +
Sbjct: 607 IKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAA 666

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
             +L+ +P+ P  Y+ LSN YA++G+W E +++R  MKE+ L K  GCSWI++G+++H F
Sbjct: 667 RKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKVHKF 726

Query: 756 VACDRSHPKTEEIYATLALLGMHVR 780
              D SHP   +IY  L  L   ++
Sbjct: 727 YVGDTSHPNAHQIYDELDWLITEIK 751



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 231/480 (48%), Gaps = 40/480 (8%)

Query: 35  ESDNSYESLYKSYFHQISSL---------SKEKQI---REAVDLLTEMKCRNFQIGPEIY 82
           + +NS+E+ YK  F ++S L         ++  Q+   REA+    +M    F+      
Sbjct: 214 KGENSFENAYK-VFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTL 272

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA---LDVASRLF 139
             +   C    ++  G+Q+H+  +++G      + VE  LV  YAKC A   +D   ++F
Sbjct: 273 SSVFSACAELENLSLGRQLHSWAIRSG----LADDVECSLVDMYAKCSADGSVDDCRKVF 328

Query: 140 CRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGW 197
            R++  +V SW A+I G      L+ +A+  F EM   G V P++F   +  KACG +  
Sbjct: 329 DRMQDHSVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSD 388

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
              G+ V G+  K G      V++S+I M+ KC  +E+AR  F+ +  +N+V++N+ + G
Sbjct: 389 PRVGKQVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDG 448

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
             +N   E A  +  E+    +  +  +  S+LS  AN+ +L +G+Q H+  +  G+  +
Sbjct: 449 TCRNLDFEHAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCN 508

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
             + +++I+ YSK G ++ A  VFS M  R++++W  +I  + + G ++ V         
Sbjct: 509 QPVCNALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERV--------- 559

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISW 436
                ++   Q+    +  + V +  +L+A + +G   E  R F  M +   I P +  +
Sbjct: 560 -----LETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHY 614

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
             ++    R G + +A   F  + ++  Q +++ W T +     +S      L  +++LE
Sbjct: 615 ACMVDLLCRAGLLTDA---FEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILE 671



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 16/234 (6%)

Query: 32  KLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQ 87
           ++ ++  ++ESL +    SY   +    +      A +LL+E+  R   +    +  LL 
Sbjct: 423 RMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFASLLS 482

Query: 88  GCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV 147
           G      +  G+QIH+++LK G   + N+ V   L+  Y+KC ++D ASR+F  +  +NV
Sbjct: 483 GVANVGSLRKGEQIHSQVLKLG--LSCNQPVCNALISMYSKCGSIDTASRVFSLMDNRNV 540

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL-----GWVGFGR 202
            SW ++I    + G +E+ L  F +M ++GV P+      +L AC  +     GW  F  
Sbjct: 541 ISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFNS 600

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
               + +K   +      + ++D+  + G L +A +  + M    +V+ W + +
Sbjct: 601 MYEDHKIKPKMEH----YACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 494 MLETGIKP-STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           M   GI+P  + T +  L +C      R G+ +H  LI  ++   + +  SL+ +Y+K G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSG 111

Query: 553 NIHQAKRVFDIS---PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           ++ +AK VF+       +++  ++AM++ +  +G   +A+ LF    + G+ P+   +T 
Sbjct: 112 DLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTA 171

Query: 610 ILNACSHAGLVNEG 623
           ++ ACS++  V  G
Sbjct: 172 VIRACSNSDFVGVG 185


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 221/661 (33%), Positives = 360/661 (54%), Gaps = 76/661 (11%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  Y++   ++ A  +F  +R KN+ SW +I+    +    ++A   F +M E      
Sbjct: 104 LITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERN---- 159

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
                        + W G    V GY+                      G + EAR+VFD
Sbjct: 160 ------------TISWNGL---VSGYI--------------------NNGMINEAREVFD 184

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M  RNVV+W +M+ GYV+ G+  EA  +F++M  + V    VS T +L        L E
Sbjct: 185 RMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVMLGG-----LLQE 235

Query: 302 GKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           G+   A  + + M E D V  +++I  Y +VG L +A ++F  M  R++V+W  +I  YV
Sbjct: 236 GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYV 295

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
           Q+ Q D+                  A+++F  +  ++ V W  +L  Y + GR  EAS L
Sbjct: 296 QNQQVDI------------------ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASEL 337

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
           F  M ++    ++++ N++IL F +NG++ +A+ +F QM+    + +  TW+ +I    +
Sbjct: 338 FNAMPIK----SVVACNAMILCFGQNGEVPKARQVFDQMR----EKDEGTWSAMIKVYER 389

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
                +A+  F+ M   GI+P+  ++   LS C  +A+L +GR IH  L+R    L   +
Sbjct: 390 KGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYV 449

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
            + L+ MY KCGN+ +AK+VFD    K++ ++N++I+GYA HGL VEAL +F ++   GI
Sbjct: 450 ASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGI 509

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
            PD +TF  +L+ACS+ G V +GLE+F  M + +QV+  +EH+ C+V+LL R G L+EA+
Sbjct: 510 MPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAM 569

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
            +I  MP + DA I G+LL  C    + +LAE  ++ LL LEP N G ++ LSN YA+ G
Sbjct: 570 DLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQG 629

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS-HPKTEEIYATLALLGMHV 779
           RW++V+++R  M+++ + K PGCSWI + +++H F   D S HP+  EI   L  L   +
Sbjct: 630 RWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLL 689

Query: 780 R 780
           R
Sbjct: 690 R 690



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 192/436 (44%), Gaps = 77/436 (17%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDM-----YTGQQ 100
           S+   +  L +E +I EA        CR F + PE      +  V + +M       G+ 
Sbjct: 224 SWTVMLGGLLQEGRIDEA--------CRLFDMMPE------KDVVTRTNMIGGYCQVGRL 269

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
           + AR+L + +   RN    T ++  Y +   +D+A +LF  +  KN  SW A++      
Sbjct: 270 VEARMLFD-EMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNC 328

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G  ++A   F  M      P   V+     AC A+                         
Sbjct: 329 GRLDEASELFNAM------PIKSVV-----ACNAM------------------------- 352

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
              I  +G+ G++ +AR+VFD M  ++   W++MI  Y + GL  +A+ +F  M  EG+ 
Sbjct: 353 ---ILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIR 409

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P   S+ S+LS  A L  LD G++ HA  V +  +LD  + S +++ Y K G L  A+ V
Sbjct: 410 PNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQV 469

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F R   +D+V WN +I  Y Q G   V       DM+              S I+ D V 
Sbjct: 470 FDRFAVKDVVMWNSIITGYAQHGLG-VEALRVFHDMHF-------------SGIMPDDVT 515

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL-RNGQMNEAKDMFLQM 459
           +  +L+A +  G   +   +F  M+ +      I   + ++  L R G++NEA D+   +
Sbjct: 516 FVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDL---I 572

Query: 460 QSLGVQPNLITWTTLI 475
           + + ++ + I W  L+
Sbjct: 573 EKMPMEADAIIWGALL 588



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 187/426 (43%), Gaps = 76/426 (17%)

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
           ++  +S++  Y++  +I+ A+ VF+ +  ++++ WN+++A Y    R  EA  +F +M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS- 156

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                N ISWN ++ G++ NG +NEA+++F +M     + N+++WT ++ G  +    +E
Sbjct: 157 ---ERNTISWNGLVSGYINNGMINEAREVFDRMP----ERNVVSWTAMVRGYVKEGMISE 209

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           A   F +M E  +   T  +                    G L++               
Sbjct: 210 AETLFWQMPEKNVVSWTVML--------------------GGLLQE-------------- 235

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
                G I +A R+FD+ P K++     MI GY   G  VEA  LF  + ++ +    ++
Sbjct: 236 -----GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNV----VS 286

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           +T ++        V+   +LF  M   ++V      +  ++   + CG LDEA  +   M
Sbjct: 287 WTTMITGYVQNQQVDIARKLFEVMPEKNEVS-----WTAMLKGYTNCGRLDEASELFNAM 341

Query: 667 PCDPDAHIIGSLLSTCVKSN-ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           P    + +  + +  C   N E   A  + +   Q+   + G + A+   Y   G   + 
Sbjct: 342 PI--KSVVACNAMILCFGQNGEVPKARQVFD---QMREKDEGTWSAMIKVYERKGLELDA 396

Query: 726 SQVRDIMKEKGLRKN-----------PGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            ++  +M+ +G+R N            G + +  G E+H  +   RS     ++Y    L
Sbjct: 397 LELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLV--RSQFDL-DVYVASVL 453

Query: 775 LGMHVR 780
           L M+++
Sbjct: 454 LSMYIK 459


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 220/656 (33%), Positives = 358/656 (54%), Gaps = 76/656 (11%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  Y++   ++ A  +F  +R KN+ SW +I+    +    ++A   F +M E      
Sbjct: 104 LITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT--- 160

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
                        + W G    V GY+                      G + EAR+VFD
Sbjct: 161 -------------ISWNGL---VSGYI--------------------NNGMINEAREVFD 184

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M  RNVV+W +M+ GYV+ G+  EA  +F++M  + V    VS T +L        L E
Sbjct: 185 RMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVMLGG-----LLQE 235

Query: 302 GKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           G+   A  + + M E D V  +++I  Y +VG L +A ++F  M  R++V+W  +I  YV
Sbjct: 236 GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYV 295

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
           Q+ Q D+                  A+++F  +  ++ V W  +L  Y + GR  EAS L
Sbjct: 296 QNQQVDI------------------ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASEL 337

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
           F  M ++    ++++ N++IL F +NG++ +A+ +F QM+    + +  TW+ +I    +
Sbjct: 338 FNAMPIK----SVVACNAMILCFGQNGEVPKARQVFDQMR----EKDEGTWSAMIKVYER 389

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
                +A+  F+ M   GI+P+  ++   LS C  +A+L +GR IH  L+R    L   +
Sbjct: 390 KGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYV 449

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
            + L+ MY KCGN+ +AK+VFD    K++ ++N++I+GYA HGL VEAL +F ++   GI
Sbjct: 450 ASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGI 509

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
            PD +TF  +L+ACS+ G V +GLE+F  M + +QV+  +EH+ C+V+LL R G L+EA+
Sbjct: 510 MPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAM 569

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
            +I  MP + DA I G+LL  C    + +LAE  ++ LL LEP N G ++ LSN YA+ G
Sbjct: 570 DLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQG 629

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS-HPKTEEIYATLALL 775
           RW++V+++R  M+++ + K PGCSWI + +++H F   D S HP+  EI   L  L
Sbjct: 630 RWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWL 685



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 192/436 (44%), Gaps = 77/436 (17%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDM-----YTGQQ 100
           S+   +  L +E +I EA        CR F + PE      +  V + +M       G+ 
Sbjct: 224 SWTVMLGGLLQEGRIDEA--------CRLFDMMPE------KDVVTRTNMIGGYCQVGRL 269

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
           + AR+L + +   RN    T ++  Y +   +D+A +LF  +  KN  SW A++      
Sbjct: 270 VEARMLFD-EMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNC 328

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G  ++A   F  M      P   V+     AC A+                         
Sbjct: 329 GRLDEASELFNAM------PIKSVV-----ACNAM------------------------- 352

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
              I  +G+ G++ +AR+VFD M  ++   W++MI  Y + GL  +A+ +F  M  EG+ 
Sbjct: 353 ---ILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIR 409

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P   S+ S+LS  A L  LD G++ HA  V +  +LD  + S +++ Y K G L  A+ V
Sbjct: 410 PNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQV 469

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F R   +D+V WN +I  Y Q G   V       DM+              S I+ D V 
Sbjct: 470 FDRFAVKDVVMWNSIITGYAQHGLG-VEALRVFHDMHF-------------SGIMPDDVT 515

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL-RNGQMNEAKDMFLQM 459
           +  +L+A +  G   +   +F  M+ +      I   + ++  L R G++NEA D+   +
Sbjct: 516 FVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDL---I 572

Query: 460 QSLGVQPNLITWTTLI 475
           + + ++ + I W  L+
Sbjct: 573 EKMPMEADAIIWGALL 588



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 187/426 (43%), Gaps = 76/426 (17%)

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
           ++  +S++  Y++  +I+ A+ VF+ +  ++++ WN+++A Y    R  EA  +F +M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS- 156

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                N ISWN ++ G++ NG +NEA+++F +M     + N+++WT ++ G  +    +E
Sbjct: 157 ---ERNTISWNGLVSGYINNGMINEAREVFDRMP----ERNVVSWTAMVRGYVKEGMISE 209

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           A   F +M E  +   T  +                    G L++               
Sbjct: 210 AETLFWQMPEKNVVSWTVML--------------------GGLLQE-------------- 235

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
                G I +A R+FD+ P K++     MI GY   G  VEA  LF  + ++ +    ++
Sbjct: 236 -----GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNV----VS 286

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           +T ++        V+   +LF  M   ++V      +  ++   + CG LDEA  +   M
Sbjct: 287 WTTMITGYVQNQQVDIARKLFEVMPEKNEVS-----WTAMLKGYTNCGRLDEASELFNAM 341

Query: 667 PCDPDAHIIGSLLSTCVKSN-ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           P    + +  + +  C   N E   A  + +   Q+   + G + A+   Y   G   + 
Sbjct: 342 PI--KSVVACNAMILCFGQNGEVPKARQVFD---QMREKDEGTWSAMIKVYERKGLELDA 396

Query: 726 SQVRDIMKEKGLRKN-----------PGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            ++  +M+ +G+R N            G + +  G E+H  +   RS     ++Y    L
Sbjct: 397 LELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLV--RSQFDL-DVYVASVL 453

Query: 775 LGMHVR 780
           L M+++
Sbjct: 454 LSMYIK 459


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 229/757 (30%), Positives = 371/757 (49%), Gaps = 107/757 (14%)

Query: 82   YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
            +  +L+      D+  G+QIHA + K G     +  V   LV  Y KC  L  A ++F  
Sbjct: 333  FPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDD 392

Query: 142  LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL-GWVGF 200
            +  ++  SW ++I   CR    E +L  F  M  + V P +F L +V  AC  + G V  
Sbjct: 393  IPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRL 452

Query: 201  GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
            G+ VH Y L+ G D   +  ++L+ MY + G + +A+ +F     +++V+WN++I    Q
Sbjct: 453  GKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQ 511

Query: 261  NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            N   EEA+   Y M ++GV P  V++ S+L A + L+ L  G++ H  A+ NG  ++N  
Sbjct: 512  NDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSF 571

Query: 321  GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
                                                            V +++VDMY  C
Sbjct: 572  ------------------------------------------------VGTALVDMYCNC 583

Query: 381  ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG-ISPNIISWNSV 439
            ++    + VF+ ++ R V +WN LLA YA      +A RLF +M  E    PN  ++ SV
Sbjct: 584  KQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASV 643

Query: 440  I---------------------LGFLRNGQMNEA-KDMFLQMQSLGV---------QPNL 468
            +                      GF ++  +  A  DM+ +M  + +         + ++
Sbjct: 644  LPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDI 703

Query: 469  ITWTTLISGLT------------------QNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
            ++W T+I+G                    Q   G++  + +++      KP++ T+   L
Sbjct: 704  VSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVL 763

Query: 511  SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
              C  +A+L  G+ IH Y ++  L +   + ++LVDMYAKCG ++ A RVFD  P + + 
Sbjct: 764  PGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVI 823

Query: 571  VYNAMISGYAMHGLAVEALALFKNLQQKG------IDPDSITFTNILNACSHAGLVNEGL 624
             +N +I  Y MHG   EAL LF+ +   G      I P+ +T+  I  ACSH+G+V+EGL
Sbjct: 824  TWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGL 883

Query: 625  ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSLLSTCV 683
             LF  M + H V+P  +H+ C+V+LL R G + EA  +I TMP + +      SLL  C 
Sbjct: 884  HLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACR 943

Query: 684  KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
                 E  E  ++HL  LEP+   +YV +SN Y+++G W++   VR  MKE G+RK PGC
Sbjct: 944  IHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGC 1003

Query: 744  SWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            SWI+ G+E+H F++ D SHP+++E++  L  L   +R
Sbjct: 1004 SWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMR 1040


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 208/621 (33%), Positives = 334/621 (53%), Gaps = 92/621 (14%)

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD +     + WN ++    ++G    +I +F +M   GVE    + + +  + ++L ++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
             G+Q H   + +G    N +G+S++ FY K   ++ A  VF  M ERD+++WN +I  Y
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 360 VQ------------------------------SGQSDVVVAS------------------ 371
           V                               +G +D  + S                  
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 372 ----SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
               +++DMY+KC  +D+AK VF  +  R VV + +++A YA  G +GEA +LF +M+ E
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 428 GISPNIISWNSVI-----------------------LGF------------LRNGQMNEA 452
           GISP++ +  +V+                       LGF             + G M EA
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 300

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALS 511
           + +F +M+      ++I+W T+I G ++N   NEA+  F  +LE     P   T+ C L 
Sbjct: 301 ELVFSEMRV----KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 356

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           AC  +++   GR IHGY++R+       +  SLVDMYAKCG +  A  +FD   SK+L  
Sbjct: 357 ACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS 416

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           +  MI+GY MHG   EA+ALF  ++Q GI+ D I+F ++L ACSH+GLV+EG   F  M 
Sbjct: 417 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMR 476

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
            + +++P++EH+ C+V++L+R G+L +A R I  MP  PDA I G+LL  C   ++ +LA
Sbjct: 477 HECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLA 536

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           E ++E + +LEP+N G YV ++N YA + +W +V ++R  + ++GLRKNPGCSWI+I   
Sbjct: 537 EKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGR 596

Query: 752 LHVFVACDRSHPKTEEIYATL 772
           +++FVA D S+P+TE I A L
Sbjct: 597 VNIFVAGDSSNPETENIEAFL 617



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 161/582 (27%), Positives = 275/582 (47%), Gaps = 47/582 (8%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ++ L+K      ++ L  +M     ++    +  + +     R ++ G+Q+H  ILK+G 
Sbjct: 16  MNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSG- 74

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F     V   LV FY K   +D A ++F  +  ++V SW +II      GL+EK L  F
Sbjct: 75  -FGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVF 133

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           V+M   G+  D   + +V   C     +  GRAVH   +K  F       ++L+DMY KC
Sbjct: 134 VQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC 193

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           GDL+ A+ VF  M  R+VV++ SMI GY + GL  EA+++F EM  EG+ P   +VT++L
Sbjct: 194 GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVL 253

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           +  A    LDEGK+ H     N +  D  + +++++ Y+K G +++AE+VFS M  +DI+
Sbjct: 254 NCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDII 313

Query: 351 TWNLLIASYVQSGQS------------------DVVVASSIVDMYAKCERIDNAKQVFNS 392
           +WN +I  Y ++  +                  D    + ++   A     D  +++   
Sbjct: 314 SWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGY 373

Query: 393 II----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI-SPNIISWNSVILGFLRNG 447
           I+      D  + N+L+  YA  G     + L   M  + I S +++SW  +I G+  +G
Sbjct: 374 IMRNGYFSDRHVANSLVDMYAKCG-----ALLLAHMLFDDIASKDLVSWTVMIAGYGMHG 428

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTI 506
              EA  +F QM+  G++ + I++ +L+   + +   +E   FF  M  E  I+P+    
Sbjct: 429 FGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHY 488

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ--------AK 558
            C +         R G  I  Y    ++ +P P  T    +   C  IH         A+
Sbjct: 489 ACIVDMLA-----RTGDLIKAYRFIENMPIP-PDATIWGALLCGC-RIHHDVKLAEKVAE 541

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
           +VF++ P +    Y  M + YA      +   L K + Q+G+
Sbjct: 542 KVFELEP-ENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGL 582


>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g69350, mitochondrial-like
           [Cucumis sativus]
          Length = 804

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 236/760 (31%), Positives = 377/760 (49%), Gaps = 94/760 (12%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           Q+HA I+        +    TKL+  Y++   L  ++ +F      + F W  ++  +  
Sbjct: 19  QLHAHIIVTA--LHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVW 76

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            G  ++A+  + +M    +  +++  P+VL+AC   G +G G+ VHG ++K GFD    V
Sbjct: 77  NGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMDPVV 136

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            ++L+ +YG+ G L+ ARKVF  M  R++V+W+S+I   V+NG   E +  F  M  EG 
Sbjct: 137 NTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGG 196

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P  V V +++ A   L  L   K AH   +  G+E D  + SS+I  Y+K G L  AE+
Sbjct: 197 TPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEI 256

Query: 340 VFSRMVERDIVTWNLLIAS-------------YVQSGQSDV------------------- 367
           VF  +  R   TW  +I+S             +V   +++V                   
Sbjct: 257 VFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSL 316

Query: 368 ---------------------VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                                 +  +++++YA   + D  +++ + I  R + +WNTL++
Sbjct: 317 LREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLIS 376

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIIS------------------------------- 435
            YA  G   E   LF +MQ +G  P+  S                               
Sbjct: 377 VYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPFMD 436

Query: 436 ---WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
              +NS+I  + + G ++ A  +F QM+  GV    +TW ++ISGL+QN    +AI  F 
Sbjct: 437 EYVFNSLINMYSKCGYVDLAYMIFDQMEPKGV----VTWNSMISGLSQNGYSTKAISLFD 492

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
            M  T  +         + AC+ +  L  G+ IH  LI   +     I T+LVDMYAKCG
Sbjct: 493 LMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMYAKCG 552

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           ++  A+RVFD    + +  ++++IS Y +HG   E + LF  + + GI P+ +T  N+L+
Sbjct: 553 DLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLS 612

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           ACSHAG V EG+ LF     D  ++P  EHF C+V+LLSR G+LDEA  +I  MP  P A
Sbjct: 613 ACSHAGCVKEGM-LFFNSMRDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFPPGA 671

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            I G+LL+ C      ++A+ I   L  ++ D+ G+Y  LSN YAA G WNE  +VR +M
Sbjct: 672 SIWGALLNGCRIHQRMDIAKNIQRELWNIQTDDTGHYTLLSNIYAAGGEWNEFGEVRSMM 731

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           K  GL+K P  S +++G++ + F A D S+P+ +  Y+T 
Sbjct: 732 KGTGLKKVPAYSVVELGKKAYRFGAGDASYPQLKYTYSTF 771



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 3/208 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS LS+     +A+ L   M     +IG   +  ++Q C +   +  G+ IH +++  G 
Sbjct: 475 ISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCG- 533

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
              +  ++ET LV  YAKC  L  A R+F  +  ++V SW+++I      G   + +  F
Sbjct: 534 -VRKCIFIETALVDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLF 592

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M E G+ P++  + NVL AC   G V  G      +   G +        ++D+  + 
Sbjct: 593 SKMLESGIKPNDVTVMNVLSACSHAGCVKEGMLFFNSMRDFGIEPKREHFVCIVDLLSRA 652

Query: 231 GDLEEARKVFDGM-IARNVVAWNSMIVG 257
           GDL+EA ++   M        W +++ G
Sbjct: 653 GDLDEAYEIIKLMPFPPGASIWGALLNG 680



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 17/159 (10%)

Query: 517 ASLRNGRAIHGYLI---RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            +LR    +H ++I    H+  LP+   T L++ Y++ G++  +  VF    S +  ++ 
Sbjct: 12  TTLRQLAQLHAHIIVTALHNDPLPS---TKLIESYSQLGDLQSSTSVFRTFHSPDSFMWG 68

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            ++  +  +G   EA++L+  +  + I  +S TF ++L ACS  G      +L VG    
Sbjct: 69  VLLKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFG------DLGVGQRVH 122

Query: 634 HQVKPSMEHFGCVVN--LLS---RCGNLDEALRVILTMP 667
            ++  S      VVN  LLS     G LD A +V   MP
Sbjct: 123 GRIIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMP 161


>gi|334187347|ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g39952, mitochondrial; Flags: Precursor
 gi|332661744|gb|AEE87144.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 775

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 234/733 (31%), Positives = 369/733 (50%), Gaps = 90/733 (12%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           ++ +A I+  G   + N +V +KL+  YA     +++SR+F  +  +++F W +II  + 
Sbjct: 44  RKHNALIITGG--LSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIKAHF 101

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCV 217
             G   ++L  F  M   G SPD+F  P V+ AC  L W   G  VHG VLK G FD   
Sbjct: 102 SNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNT 161

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            V +S +  Y KCG L++A  VFD M  R+VVAW ++I G+VQNG +E  +    +M   
Sbjct: 162 AVGASFVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSA 221

Query: 278 GVE---PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
           G +   P   ++     A +NL AL EG+  H  AV NG+     + SS+ +FYSK G  
Sbjct: 222 GSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNP 281

Query: 335 EDAEVVFSRMVERDIVTWNLLIASY----------------------------------- 359
            +A + F  + + D+ +W  +IAS                                    
Sbjct: 282 SEAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINEL 341

Query: 360 -----VQSGQS------------DVVVASSIVDMYAKCERIDNAKQVFNSIILR-DVVLW 401
                V  G++            D  V +S++ MY K E +  A+++F  I    +   W
Sbjct: 342 GKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAW 401

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQ-------- 448
           NT+L  Y  +    +   LF ++Q  GI  +  S  SVI     +G +  G+        
Sbjct: 402 NTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVK 461

Query: 449 ---------MNEAKDMFLQMQSLGV--------QPNLITWTTLISGLTQNSCGNEAILFF 491
                    +N   D++ +M  L V          N+ITW  +I+         +AI  F
Sbjct: 462 TSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIASYVHCEQSEKAIALF 521

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
             M+    KPS+ T+   L AC +  SL  G+ IH Y+   +  +   +  +L+DMYAKC
Sbjct: 522 DRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKC 581

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G++ +++ +FD    K+   +N MISGY MHG    A+ALF  +++  + P   TF  +L
Sbjct: 582 GHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALL 641

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
           +AC+HAGLV +G +LF+ M   + VKP+++H+ C+V+LLSR GNL+EA   +++MP  PD
Sbjct: 642 SACTHAGLVEQGKKLFLKM-HQYDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSMPFSPD 700

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
             I G+LLS+C+   E E+   ++E  +  +P N G Y+ L+N Y+A+G+W E  + R++
Sbjct: 701 GVIWGTLLSSCMTHGEFEMGIRMAERAVASDPQNDGYYIMLANMYSAAGKWEEAERAREM 760

Query: 732 MKEKGLRKNPGCS 744
           M+E G+ K  G S
Sbjct: 761 MRESGVGKRAGHS 773



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 111/489 (22%), Positives = 204/489 (41%), Gaps = 105/489 (21%)

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
           +L+  ++ +A+ +  G+  +  + S +I+ Y+  G    +  VF  +  RDI  WN +I 
Sbjct: 39  SLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIK 98

Query: 358 SYVQ----------------SGQS------------------------------------ 365
           ++                  SGQS                                    
Sbjct: 99  AHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFD 158

Query: 366 -DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
            +  V +S V  Y+KC  + +A  VF+ +  RDVV W  +++ +   G S        +M
Sbjct: 159 RNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKM 218

Query: 425 QLEGISPNIISWNSVILGF-------------------LRNG----------------QM 449
              G   +  +  ++  GF                   ++NG                + 
Sbjct: 219 HSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKS 278

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
               + +L  + LG   ++ +WT++I+ L ++    E+   F EM   G+ P    I+C 
Sbjct: 279 GNPSEAYLSFRELG-DEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCL 337

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKE 568
           ++    +  +  G+A HG++IRH   L + +  SL+ MY K   +  A+++F  IS    
Sbjct: 338 INELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGN 397

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
              +N M+ GY      V+ + LF+ +Q  GI+ DS + T+++++CSH G V  G  L  
Sbjct: 398 KEAWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHC 457

Query: 629 GMFSDHQVKPSMEHFGCVVN----LLSRCGNLDEALRVILTMPCDPDAHII--GSLLSTC 682
                + VK S++    VVN    L  + G+L  A R    M C+ D ++I   +++++ 
Sbjct: 458 -----YVVKTSLDLTISVVNSLIDLYGKMGDLTVAWR----MFCEADTNVITWNAMIASY 508

Query: 683 VKSNETELA 691
           V   ++E A
Sbjct: 509 VHCEQSEKA 517



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 11/225 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+S    +Q  +A+ L   M   NF+        LL  CV    +  GQ IH  I +   
Sbjct: 505 IASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEH 564

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               N  +   L+  YAKC  L+ +  LF     K+   W  +I      G  E A+  F
Sbjct: 565 --EMNLSLSAALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALF 622

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV----HGYVLKVGFDGCVFVASSLIDM 226
            +M+E  V P       +L AC   G V  G+ +    H Y +K          S L+D+
Sbjct: 623 DQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFLKMHQYDVKPNLKH----YSCLVDL 678

Query: 227 YGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRV 270
             + G+LEEA      M  + + V W +++   + +G  E  IR+
Sbjct: 679 LSRSGNLEEAESTVMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRM 723



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 13/183 (7%)

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C    SL + R  +  +I   L     + + L+  YA  G  + + RVF +   +++ ++
Sbjct: 34  CDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLW 93

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS-----HAGLVNEGLELF 627
           N++I  +  +G    +L  F ++   G  PD  T   +++AC+     H G    GL L 
Sbjct: 94  NSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLK 153

Query: 628 VGMFS-DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
            G F  +  V  S  +F       S+CG L +A  V   MP D D     +++S  V++ 
Sbjct: 154 HGGFDRNTAVGASFVYF------YSKCGFLQDACLVFDEMP-DRDVVAWTAIISGHVQNG 206

Query: 687 ETE 689
           E+E
Sbjct: 207 ESE 209


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 209/641 (32%), Positives = 337/641 (52%), Gaps = 81/641 (12%)

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           +  M    V+P+N+  P  LKAC AL     GRA+H + +  G    +FV+++L+DMY K
Sbjct: 113 YRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVK 172

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR--VFYEMTLEGVEPTRVSVT 287
           C  L +A  +F  M AR++VAWN+M+ GY  +G+   A+   +  +M +  + P   ++ 
Sbjct: 173 CACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLV 232

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           ++L   A   AL +G   HA  +                                    R
Sbjct: 233 ALLPLLAQQGALAQGTSVHAYCI------------------------------------R 256

Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
             +  N    S +  G   V++ ++++DMYAKC  +  A++VF+++  R+ V W+ L+  
Sbjct: 257 ACLHPNRNSKSKLTDG---VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGG 313

Query: 408 YADLGRSGEASRLFYQMQLEGI---SP--------------------------------- 431
           +    R  +A  LF  M  +G+   SP                                 
Sbjct: 314 FVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHA 373

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           ++ + NS++  + + G +++A  +F +M       + ++++ L+SG  QN    EA L F
Sbjct: 374 DLTAGNSLLSMYAKAGLIDQAIALFDEM----AVKDTVSYSALVSGYVQNGRAEEAFLVF 429

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
           ++M    ++P   T+   + AC+ +A+L++GR  HG +I   L   T I  +L+DMYAKC
Sbjct: 430 KKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKC 489

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G I  +++VF++ PS+++  +N MI+GY +HGL  EA ALF  +   G  PD +TF  +L
Sbjct: 490 GRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLL 549

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
           +ACSH+GLV EG   F  M   + + P MEH+ C+V+LLSR G LDEA   I +MP   D
Sbjct: 550 SACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRAD 609

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
             +  +LL  C      +L + +S  + +L P+  GN+V LSN Y+A+GR++E ++VR I
Sbjct: 610 VRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRII 669

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
            K +G +K+PGCSWI+I   LH FV  D+SHP++ EIY  L
Sbjct: 670 QKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 710



 Score =  202 bits (513), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 226/478 (47%), Gaps = 74/478 (15%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L+ C    D + G+ IH   +  G     + +V T L+  Y KC  L  A+ +F  +  +
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAG--LQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFV--EMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
           ++ +W A++      G+   A+   +  +MQ   + P+   L  +L      G +  G +
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 204 VHGYVLKVGF-----------DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
           VH Y ++              DG V + ++L+DMY KCG L  AR+VFD M ARN V W+
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDG-VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 308

Query: 253 SMIVGYVQNGLNEEAIRVFYEMTLEG---VEPTRVSVTSILSASANLDALDEGKQAHAVA 309
           ++I G+V      +A  +F  M  +G   + PT  S+ S L A A+LD L  G+Q HA+ 
Sbjct: 309 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALL 366

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----- 364
             +G+  D   G+S+++ Y+K GL++ A  +F  M  +D V+++ L++ YVQ+G+     
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 426

Query: 365 -----------------------------------------------SDVVVASSIVDMY 377
                                                          S+  + ++++DMY
Sbjct: 427 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMY 486

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           AKC RID ++QVFN +  RD+V WNT++A Y   G   EA+ LF +M   G  P+ +++ 
Sbjct: 487 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 546

Query: 438 SVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
            ++     +G + E K  F  M    G+ P +  +  ++  L++    +EA  F Q M
Sbjct: 547 CLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSM 604



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 183/360 (50%), Gaps = 23/360 (6%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-- 177
           T L+  YAKC +L  A R+F  +  +N  +W+A+IG         +A + F  M   G  
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 178 -VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
            +SP +  + + L+AC +L  +  G  +H  + K G    +   +SL+ MY K G +++A
Sbjct: 337 FLSPTS--IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
             +FD M  ++ V++++++ GYVQNG  EEA  VF +M    VEP   ++ S++ A ++L
Sbjct: 395 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 454

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            AL  G+ +H   +I G+  +  + +++I+ Y+K G ++ +  VF+ M  RDIV+WN +I
Sbjct: 455 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 514

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
           A Y   G      A  +              ++ N     D V +  LL+A +  G   E
Sbjct: 515 AGYGIHGLGKEATALFL--------------EMNNLGFPPDGVTFICLLSACSHSGLVIE 560

Query: 417 ASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
               F+ M    G++P +  +  ++    R G ++EA +    +QS+ ++ ++  W  L+
Sbjct: 561 GKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF---IQSMPLRADVRVWVALL 617



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 195/416 (46%), Gaps = 53/416 (12%)

Query: 77  IGPEIYGELLQGCVYKRDMYTGQQIHARILKNG---DFFARNEYVETKLVVFYAKCDALD 133
           + P      L+ C     +  G+Q+HA + K+G   D  A N      L+  YAK   +D
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNS-----LLSMYAKAGLID 392

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACG 193
            A  LF  + VK+  S++A++    + G +E+A + F +MQ   V PD   + +++ AC 
Sbjct: 393 QAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACS 452

Query: 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
            L  +  GR  HG V+  G      + ++LIDMY KCG ++ +R+VF+ M +R++V+WN+
Sbjct: 453 HLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT 512

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ-----AHAV 308
           MI GY  +GL +EA  +F EM   G  P  V+   +LSA ++   + EGK       H  
Sbjct: 513 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGY 572

Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
            +   ME    +    ++  S+ G L++A E + S  +  D+  W  L+ +         
Sbjct: 573 GLTPRMEHYICM----VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA--------- 619

Query: 368 VVASSIVDMYAKCERIDN---AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
                 +D+  K  R+      +   N ++L ++         Y+  GR  EA+ +    
Sbjct: 620 CRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNI---------YSAAGRFDEAAEVRIIQ 670

Query: 425 QLEGI--SPNIISW---NSVILGFLRNGQMN--------EAKDMFLQMQSLGVQPN 467
           +++G   SP   SW   N  +  F+   Q +        E  ++ + ++ LG QP+
Sbjct: 671 KVQGFKKSPG-CSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPD 725



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 17/235 (7%)

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS--CGNEAILFFQEMLETGIKPST 503
           +G ++ A  +F Q+ S    P++ T+  LI   + +S     + +  ++ ML   + P+ 
Sbjct: 70  SGHLSRAHHLFDQIPS----PDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNN 125

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            T   AL AC+ +A    GRAIH + I   L     + T+L+DMY KC  +  A  +F  
Sbjct: 126 YTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 185

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALA--LFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
            P+++L  +NAM++GYA HG+   A+A  L   +Q   + P++ T   +L   +  G + 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 622 EGLE---------LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
           +G           L     S  ++   +     ++++ ++CG+L  A RV   MP
Sbjct: 246 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 300


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 209/641 (32%), Positives = 337/641 (52%), Gaps = 81/641 (12%)

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           +  M    V+P+N+  P  LKAC AL     GRA+H + +  G    +FV+++L+DMY K
Sbjct: 113 YRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVK 172

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR--VFYEMTLEGVEPTRVSVT 287
           C  L +A  +F  M AR++VAWN+M+ GY  +G+   A+   +  +M +  + P   ++ 
Sbjct: 173 CACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLV 232

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           ++L   A   AL +G   HA  +                                    R
Sbjct: 233 ALLPLLAQQGALAQGTSVHAYRI------------------------------------R 256

Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
             +  N    S +  G   V++ ++++DMYAKC  +  A++VF+++  R+ V W+ L+  
Sbjct: 257 ACLHSNRNSKSKLTDG---VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGG 313

Query: 408 YADLGRSGEASRLFYQMQLEGI---SP--------------------------------- 431
           +    R  +A  LF  M  +G+   SP                                 
Sbjct: 314 FVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHA 373

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           ++ + NS++  + + G +++A  +F +M       + ++++ L+SG  QN    EA L F
Sbjct: 374 DLTAGNSLLSMYAKAGLIDQAIALFDEM----AVKDTVSYSALVSGYVQNGRAEEAFLVF 429

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
           ++M    ++P   T+   + AC+ +A+L++GR  HG +I   L   T I  +L+DMYAKC
Sbjct: 430 KKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKC 489

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G I  +++VF++ PS+++  +N MI+GY +HGL  EA ALF  +   G  PD +TF  +L
Sbjct: 490 GRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLL 549

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
           +ACSH+GLV EG   F  M   + + P MEH+ C+V+LLSR G LDEA   I +MP   D
Sbjct: 550 SACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRAD 609

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
             +  +LL  C      +L + +S  + +L P+  GN+V LSN Y+A+GR++E ++VR I
Sbjct: 610 VRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRII 669

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
            K +G +K+PGCSWI+I   LH FV  D+SHP++ EIY  L
Sbjct: 670 QKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 710



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 227/478 (47%), Gaps = 74/478 (15%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L+ C    D + G+ IH   +  G     + +V T L+  Y KC  L  A+ +F  +  +
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAG--LQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFV--EMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
           ++ +W A++      G+   A+   +  +MQ   + P+   L  +L      G +  G +
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 204 VHGYVLKVGF-----------DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
           VH Y ++              DG V + ++L+DMY KCG L  AR+VFD M ARN V W+
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDG-VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 308

Query: 253 SMIVGYVQNGLNEEAIRVFYEMTLEG---VEPTRVSVTSILSASANLDALDEGKQAHAVA 309
           ++I G+V      +A  +F  M  +G   + PT  S+ S L A A+LD L  G+Q HA+ 
Sbjct: 309 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALL 366

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----- 364
             +G+  D   G+S+++ Y+K GL++ A  +F  M  +D V+++ L++ YVQ+G+     
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 426

Query: 365 -----------------------------------------------SDVVVASSIVDMY 377
                                                          S+  + ++++DMY
Sbjct: 427 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMY 486

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           AKC RID ++QVFN +  RD+V WNT++A Y   G   EA+ LF +M   G  P+ +++ 
Sbjct: 487 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 546

Query: 438 SVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
            ++     +G + E K  F  M+   G+ P +  +  ++  L++    +EA  F Q M
Sbjct: 547 CLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSM 604



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 210/453 (46%), Gaps = 36/453 (7%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA--IRVFYEMTLEGVEPTRVSVTS 288
           G L  A  +FD + + +V  +N +I  Y  +     A  + ++  M    V P   +   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
            L A + L     G+  H  A+  G++ D  + +++++ Y K   L DA  +F+ M  RD
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           +V WN ++A Y   G     VA  ++ M  +  R+        +++         LLA  
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVA-HLLSMQMQMHRLRPNASTLVALL--------PLLAQQ 241

Query: 409 ADL--GRSGEASRLFYQMQLEGISPNIISWNSVILG------FLRNGQMNEAKDMFLQMQ 460
             L  G S  A R+   +     S + ++ + V+LG      + + G +  A+ +F  M 
Sbjct: 242 GALAQGTSVHAYRIRACLHSNRNSKSKLT-DGVLLGTALLDMYAKCGSLLYARRVFDAMP 300

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI-KPSTTTITCALSACTDVASL 519
           +     N +TW+ LI G    S   +A L F+ ML  G+   S T+I  AL AC  +  L
Sbjct: 301 A----RNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHL 356

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
           R G  +H  L +  +        SL+ MYAK G I QA  +FD    K+   Y+A++SGY
Sbjct: 357 RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 416

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH-----AGLVNEGLELFVGMFSDH 634
             +G A EA  +FK +Q   ++PD+ T  +++ ACSH      G  + G  +  G+ S+ 
Sbjct: 417 VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASET 476

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
            +  ++      +++ ++CG +D + +V   MP
Sbjct: 477 SICNAL------IDMYAKCGRIDLSRQVFNMMP 503



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 184/360 (51%), Gaps = 23/360 (6%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-- 177
           T L+  YAKC +L  A R+F  +  +N  +W+A+IG         +A + F  M   G  
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 178 -VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
            +SP +  + + L+AC +L  +  G  +H  + K G    +   +SL+ MY K G +++A
Sbjct: 337 FLSPTS--IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
             +FD M  ++ V++++++ GYVQNG  EEA  VF +M    VEP   ++ S++ A ++L
Sbjct: 395 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 454

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            AL  G+ +H   +I G+  +  + +++I+ Y+K G ++ +  VF+ M  RDIV+WN +I
Sbjct: 455 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 514

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
           A Y   G      A  +              ++ N     D V +  LL+A +  G   E
Sbjct: 515 AGYGIHGLGKEATALFL--------------EMNNLGFPPDGVTFICLLSACSHSGLVIE 560

Query: 417 ASRLFYQMQL-EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
               F+ M+   G++P +  +  ++    R G ++EA +    +QS+ ++ ++  W  L+
Sbjct: 561 GKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF---IQSMPLRADVRVWVALL 617



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 197/413 (47%), Gaps = 47/413 (11%)

Query: 77  IGPEIYGELLQGCVYKRDMYTGQQIHARILKNG---DFFARNEYVETKLVVFYAKCDALD 133
           + P      L+ C     +  G+Q+HA + K+G   D  A N      L+  YAK   +D
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNS-----LLSMYAKAGLID 392

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACG 193
            A  LF  + VK+  S++A++    + G +E+A + F +MQ   V PD   + +++ AC 
Sbjct: 393 QAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACS 452

Query: 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
            L  +  GR  HG V+  G      + ++LIDMY KCG ++ +R+VF+ M +R++V+WN+
Sbjct: 453 HLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT 512

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           MI GY  +GL +EA  +F EM   G  P  V+   +LSA ++   + EGK    V + +G
Sbjct: 513 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHV-MRHG 571

Query: 314 MELDNVLGSSI--INFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA 370
             L   +   I  ++  S+ G L++A E + S  +  D+  W  L+ +            
Sbjct: 572 YGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA---------CRV 622

Query: 371 SSIVDMYAKCERIDN---AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
              +D+  K  R+      +   N ++L ++         Y+  GR  EA+ +    +++
Sbjct: 623 YKNIDLGKKVSRMIQELGPEGTGNFVLLSNI---------YSAAGRFDEAAEVRIIQKVQ 673

Query: 428 GI--SPNIISW---NSVILGFLRNGQMN--------EAKDMFLQMQSLGVQPN 467
           G   SP   SW   N  +  F+   Q +        E  ++ + ++ LG QP+
Sbjct: 674 GFKKSPG-CSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPD 725



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 116/235 (49%), Gaps = 17/235 (7%)

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS--CGNEAILFFQEMLETGIKPST 503
           +G ++ A  +F Q+ S    P++ T+  LI   + +S     + +  ++ ML   + P+ 
Sbjct: 70  SGHLSRAHHLFDQIPS----PDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNN 125

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            T   AL AC+ +A    GRAIH + I   L     + T+L+DMY KC  +  A  +F  
Sbjct: 126 YTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 185

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALA--LFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
            P+++L  +NAM++GYA HG+   A+A  L   +Q   + P++ T   +L   +  G + 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 622 EGLELF-----VGMFSDHQVKPSMEH---FG-CVVNLLSRCGNLDEALRVILTMP 667
           +G  +        + S+   K  +      G  ++++ ++CG+L  A RV   MP
Sbjct: 246 QGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 300


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 220/691 (31%), Positives = 360/691 (52%), Gaps = 58/691 (8%)

Query: 127 AKCDALDVASR--LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
           A C A D+A+   L  R+  +N  SW  +I    R     +AL  +  M ++G++P NF 
Sbjct: 85  AACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFT 144

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           L +VL ACGA+  +  GR  HG  +KVG DG  FV + L+ MY KCG + +A ++FD M 
Sbjct: 145 LASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMS 204

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE--- 301
           + N V++ +M+ G  Q+G  ++A+R+F  M+   +    V+V+S+L A A   A D    
Sbjct: 205 SPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVA 264

Query: 302 -----GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
                 +  HA+ V  G + D  +G+S+I+ Y+K   +++A  VF  M    IV+WN+L+
Sbjct: 265 RAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILV 324

Query: 357 ASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
             Y Q G                 + + V  S+++    K   + +A+ +F+ I    V 
Sbjct: 325 TGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVT 384

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNG-QMNEAK 453
            WNTLL+ Y       +   LF +MQ + + P+  +   ++     LG L  G Q++ A 
Sbjct: 385 TWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSAS 444

Query: 454 ----------------DMFLQMQSLGV---------QPNLITWTTLISGLTQNSCGNEAI 488
                           DM+ +   +G+         + +++ W ++ISGL  +S   EA 
Sbjct: 445 VKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAF 504

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
            FF++M E G+ P+ ++    +++C  ++S+  GR IH  +++        + +SL+DMY
Sbjct: 505 DFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMY 564

Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
           AKCGN+  A+  F+    K +  +N MI GYA +G   +A+ LF+ +      PDS+TF 
Sbjct: 565 AKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFI 624

Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
            +L  CSH+GLV+E +  F  M S++ ++P +EH+ C+++ L R G   E + VI  MP 
Sbjct: 625 AVLTGCSHSGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPY 684

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
             DA +   LL+ CV  +  EL E+ ++HL +L+P NP  YV LSN YA  GR  + S V
Sbjct: 685 KDDAILWEVLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAV 744

Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           R +M  +G+ K  G SW+   +    F+  D
Sbjct: 745 RALMSSRGVVKGRGYSWVNHKDGARAFMVAD 775



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/503 (24%), Positives = 240/503 (47%), Gaps = 65/503 (12%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V+  ++ I    + GDL  AR +   M  RN V+WN++I    ++    EA+ ++  M  
Sbjct: 76  VYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQ 135

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           EG+ PT  ++ S+LSA   + ALD+G++ H +AV  G++ +  + + ++  Y+K G + D
Sbjct: 136 EGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVAD 195

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAK 379
           A  +F  M   + V++  ++    QSG                 + D V  SS++   A+
Sbjct: 196 AVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQ 255

Query: 380 C-----------------------ERIDNAKQVFNSIILR-------------------- 396
                                   +  D+ + V NS+I                      
Sbjct: 256 ACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSV 315

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
            +V WN L+  Y  LG    A  +   MQ  G  PN +++++++   ++   +  A+ MF
Sbjct: 316 SIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMF 375

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            ++     +P++ TW TL+SG  Q     + I  F+ M    ++P  TT+   LS C+ +
Sbjct: 376 DKIS----KPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRL 431

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
             L  G+ +H   ++  L     + + L+DMY+KCG +  A+ +F++   +++  +N+MI
Sbjct: 432 GILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMI 491

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           SG A+H L  EA   FK +++ G+ P   ++ +++N+C+    + +G ++   +  D   
Sbjct: 492 SGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKD-GY 550

Query: 637 KPSMEHFGCVVNLLSRCGNLDEA 659
             ++     ++++ ++CGN+D+A
Sbjct: 551 DQNVYVGSSLIDMYAKCGNMDDA 573



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 153/591 (25%), Positives = 261/591 (44%), Gaps = 91/591 (15%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+++++     EA+++   M              +L  C     +  G++ H   +K G 
Sbjct: 114 IAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVG- 172

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               N++VE  L+  Y KC ++  A RLF  +   N  S+ A++G   + G  + AL  F
Sbjct: 173 -LDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLF 231

Query: 171 VEMQEDGVSPDNFVLPNVLKAC--GALGWVGFGRA------VHGYVLKVGFDGCVFVASS 222
             M    +  D   + +VL AC     G     RA      +H  V++ GFD    V +S
Sbjct: 232 ARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNS 291

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LIDMY K   ++EA KVF+ M + ++V+WN ++ GY Q G  E A+ V   M   G EP 
Sbjct: 292 LIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPN 351

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVF 341
            V+ +++L++   + A D      A A+ + +   +V   +++++ Y +  L +D   +F
Sbjct: 352 EVTYSNMLASC--IKARD---VPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELF 406

Query: 342 SRM----VERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKC 380
            RM    V+ D  T  +++++  + G                  +D+ VAS ++DMY+KC
Sbjct: 407 RRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKC 466

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP--------- 431
            ++  A+ +FN +  RDVV WN++++  A    + EA   F QM+  G+ P         
Sbjct: 467 GQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMI 526

Query: 432 --------------------------NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
                                     N+   +S+I  + + G M++A+  F  M    + 
Sbjct: 527 NSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCM----IV 582

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            N++ W  +I G  QN  G +A+  F+ ML T  KP + T    L+ C+    +    A 
Sbjct: 583 KNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIAY 642

Query: 526 -----HGYLIRHDLCLPTPIV---TSLVDMYAKCGNIHQAKRVFDISPSKE 568
                  Y IR       P+V   T L+D   + G   +   V D  P K+
Sbjct: 643 FNSMESNYGIR-------PLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKD 686



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 141/549 (25%), Positives = 248/549 (45%), Gaps = 64/549 (11%)

Query: 21  KPLKLSQT-HLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGP 79
           + ++L+Q+ H   +R+  +S + +  S     +   K  +  +  + ++ +   ++ I  
Sbjct: 265 RAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILV 324

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
             YG+L  GC Y+R +    ++   + ++G  F  NE   + ++    K   +  A  +F
Sbjct: 325 TGYGQL--GC-YERAL----EVLDLMQESG--FEPNEVTYSNMLASCIKARDVPSARAMF 375

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
            ++   +V +W  ++    +  L +  +  F  MQ   V PD   L  +L  C  LG + 
Sbjct: 376 DKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILE 435

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            G+ VH   +K+     +FVAS LIDMY KCG +  A+ +F+ M  R+VV WNSMI G  
Sbjct: 436 LGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLA 495

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
            + LNEEA   F +M   G+ PT  S  S++++ A L ++ +G+Q HA  + +G + +  
Sbjct: 496 IHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVY 555

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           +GSS+I+ Y+K G ++DA + F+ M+ ++IV WN +I  Y Q+G  +             
Sbjct: 556 VGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGE------------- 602

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
                                               +A  LF  M      P+ +++ +V
Sbjct: 603 ------------------------------------KAVELFEYMLTTKQKPDSVTFIAV 626

Query: 440 ILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           + G   +G ++EA   F  M+S  G++P +  +T LI  L +     E +    +M    
Sbjct: 627 LTGCSHSGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKM---P 683

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
            K         L+AC    +   G     +L R D   P+P V  L ++YA  G    A 
Sbjct: 684 YKDDAILWEVLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVL-LSNIYATLGRHGDAS 742

Query: 559 RVFDISPSK 567
            V  +  S+
Sbjct: 743 AVRALMSSR 751



 Score = 42.7 bits (99), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 99/240 (41%), Gaps = 56/240 (23%)

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG-LAV------ 586
           L   T ++  LV++Y+  G    A R F   P   +  YNA IS     G LA       
Sbjct: 41  LAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLLG 100

Query: 587 ------------------------EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
                                   EAL +++ + Q+G+ P + T  ++L+AC     +++
Sbjct: 101 RMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDD 160

Query: 623 -----GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH---I 674
                GL + VG+  +  V+  +      + + ++CG++ +A+R+   M    +     +
Sbjct: 161 GRRCHGLAVKVGLDGNQFVENGL------LGMYTKCGSVADAVRLFDWMSSPNEVSFTAM 214

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN-----AYAASGRWNEVSQVR 729
           +G L  +    +   L   +S   ++++P      VA+S+     A A +G +N    +R
Sbjct: 215 MGGLAQSGAVDDALRLFARMSRSAIRVDP------VAVSSVLGACAQACAGDYNVARAIR 268


>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Cucumis sativus]
          Length = 804

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 236/760 (31%), Positives = 377/760 (49%), Gaps = 94/760 (12%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           Q+HA I+        +    TKL+  Y++   L  ++ +F      + F W  ++  +  
Sbjct: 19  QLHAHIIVTA--LHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVW 76

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            G  ++A+  + +M    +  +++  P+VL+AC   G +G G+ VHG ++K GFD    V
Sbjct: 77  NGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMDPVV 136

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            ++L+ +YG+ G L+ ARKVF  M  R++V+W+S+I   V+NG   E +  F  M  EG 
Sbjct: 137 NTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGG 196

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P  V V +++ A   L  L   K AH   +  G+E D  + SS+I  Y+K G L  AE+
Sbjct: 197 TPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEI 256

Query: 340 VFSRMVERDIVTWNLLIAS-------------YVQSGQSDV------------------- 367
           VF  +  R   TW  +I+S             +V   +++V                   
Sbjct: 257 VFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSL 316

Query: 368 ---------------------VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                                 +  +++++YA   + D  +++ + I  R + +WNTL++
Sbjct: 317 LREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLIS 376

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIIS------------------------------- 435
            YA  G   E   LF +MQ +G  P+  S                               
Sbjct: 377 VYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPFMD 436

Query: 436 ---WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
              +NS+I  + + G ++ A  +F QM+  GV    +TW ++ISGL+QN    +AI  F 
Sbjct: 437 EYVFNSLINMYSKCGYVDLAYMIFDQMEPKGV----VTWNSMISGLSQNGYSTKAISLFD 492

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
            M  T  +         + AC+ +  L  G+ IH  LI   +     I T+LVDMYAKCG
Sbjct: 493 LMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMYAKCG 552

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           ++  A+RVFD    + +  ++++IS Y +HG   E + LF  + + GI P+ +T  N+L+
Sbjct: 553 DLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLS 612

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           ACSHAG V EG+ LF     D  ++P  EHF C+V+LLSR G+LDEA  +I  MP  P A
Sbjct: 613 ACSHAGCVKEGM-LFFNSMRDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFPPGA 671

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            I G+LL+ C      ++A+ I   L  ++ D+ G+Y  LSN YAA G WNE  +VR +M
Sbjct: 672 SIWGALLNGCRIHQRMDIAKNIQRELWNIQTDDTGHYTLLSNIYAAGGEWNEFGEVRSMM 731

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           K  GL+K P  S +++G++ + F A D S+P+ +  Y+T 
Sbjct: 732 KGTGLKKVPAYSVVELGKKAYRFGAGDASYPQLKYTYSTF 771



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 3/208 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS LS+     +A+ L   M     +IG   +  ++Q C +   +  G+ IH +++  G 
Sbjct: 475 ISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCG- 533

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
              +  ++ET LV  YAKC  L  A R+F  +  ++V SW+++I      G   + +  F
Sbjct: 534 -VRKCIFIETALVDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLF 592

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M E G+ P++  + NVL AC   G V  G      +   G +        ++D+  + 
Sbjct: 593 SKMLESGIKPNDVTVMNVLSACSHAGCVKEGMLFFNSMRDFGIEPKREHFVCIVDLLSRA 652

Query: 231 GDLEEARKVFDGM-IARNVVAWNSMIVG 257
           GDL+EA ++   M        W +++ G
Sbjct: 653 GDLDEAYEIIKLMPFPPGASIWGALLNG 680



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 17/159 (10%)

Query: 517 ASLRNGRAIHGYLI---RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            +LR    +H ++I    H+  LP+   T L++ Y++ G++  +  VF    S +  ++ 
Sbjct: 12  TTLRTLAQLHAHIIVTALHNDPLPS---TKLIESYSQLGDLQSSTSVFRTFHSPDSFMWG 68

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            ++  +  +G   EA++L+  +  + I  +S TF ++L ACS  G      +L VG    
Sbjct: 69  VLLKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFG------DLGVGQRVH 122

Query: 634 HQVKPSMEHFGCVVN--LLS---RCGNLDEALRVILTMP 667
            ++  S      VVN  LLS     G LD A +V   MP
Sbjct: 123 GRIIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMP 161


>gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]
          Length = 1849

 Score =  369 bits (947), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 213/685 (31%), Positives = 372/685 (54%), Gaps = 43/685 (6%)

Query: 97   TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL-DVASRLFCRLRVKNVFSWAAIIG 155
             G+ +H+ ++K+G     +      L+  YAKC  +   A   F R+  K+V SW A+I 
Sbjct: 1091 AGKSVHSYVIKSG--LESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIA 1148

Query: 156  LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL---GWVGFGRAVHGYVLK-V 211
                   +E+A   F  M +  + P+   + ++L  C +L       +G+ VH +VL+ +
Sbjct: 1149 GFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRM 1208

Query: 212  GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
                 V V +SL+  Y +   +E+A  +F  M +R++V+WN++I GY  NG   +A+ +F
Sbjct: 1209 ELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELF 1268

Query: 272  YE-MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-GMELDNVLGSSIINFYS 329
             E ++LE ++P  V++ S+L A A++  L   K  H   + + G+  D  +G+++++FY+
Sbjct: 1269 SEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYA 1328

Query: 330  KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASS 372
            K    + A   F  +  +D+++WN ++ ++ +SG                 + D +   +
Sbjct: 1329 KCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILT 1388

Query: 373  IVDMYAKCERIDNAKQVFNSIILRDVV-------LWNTLLAAYADLGRSGEASRLFYQMQ 425
            I+  YA   R+   K+  +  I   ++       L N +L AYA  G    A  +F  + 
Sbjct: 1389 IIQYYAAVSRVKKVKETHSYSIRFGLLQGDAXPTLGNGMLDAYAKCGNMKYAVNIFGSLS 1448

Query: 426  LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
             +    N+++ NS+I G++ +   ++A  +F  M     + +L TW  ++    +N   +
Sbjct: 1449 EK---RNVVTCNSMISGYVTSSSHDDAYAIFNTMS----ETDLTTWNLMVRVYAENDFPD 1501

Query: 486  EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL-PTPIVTSL 544
            +A+  F E+   G+KP   TI   L AC  +AS+   R  HGY+IR   C     +  + 
Sbjct: 1502 QALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIR--ACFNDVRLNGAF 1559

Query: 545  VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
            +DMY+KCG++  A ++F  SP K+L ++ AM+ G+AMHG+  EAL +F  + + G+ PD 
Sbjct: 1560 IDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDH 1619

Query: 605  ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
            +  T +L ACSHAGLV+EG ++F  +   H  +P+ME + CVV+LL+R G + +A   + 
Sbjct: 1620 VIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVT 1679

Query: 665  TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
             MP + +A+I G+LL  C   +E EL   +++HL ++E DN GNYV +SN YAA  RW+ 
Sbjct: 1680 RMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMSNLYAADARWDG 1739

Query: 725  VSQVRDIMKEKGLRKNPGCSWIQIG 749
            V ++R +M+ + L+K  GCSWI++G
Sbjct: 1740 VMEIRRLMRTRELKKPAGCSWIEVG 1764



 Score =  182 bits (462), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 149/554 (26%), Positives = 261/554 (47%), Gaps = 80/554 (14%)

Query: 177  GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
            G  P+  +L  +LK+C A   + FG  +HGY LK+G   C  +   L+++Y K G L+  
Sbjct: 966  GYKPNGQILAALLKSCVAXSAIRFGSVLHGYALKLGHVSCQSLCKGLLNLYAKSGALDYC 1025

Query: 237  RKVFDGMIARNVVAWNSMIVGYVQNGLNE-EAIRVFYEMTL-EGVEPTRVSVTSILSASA 294
             K+F  M  R+ V WN ++ G      +E E +R+F  M +    +P  V++  +L   A
Sbjct: 1026 NKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCA 1085

Query: 295  NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL-EDAEVVFSRMVERDIVTWN 353
             L   D GK  H+  + +G+E   + G+++I+ Y+K GL+  DA   F+R+  +D+V+WN
Sbjct: 1086 RLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWN 1144

Query: 354  LLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNA-----KQVFN 391
             +IA + ++                  Q +    +SI+ + A  E  +NA     K+V  
Sbjct: 1145 AVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLE--ENAGYRYGKEVHC 1202

Query: 392  SIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
             ++ R     DV + N+L++ Y  + +  +A  LF  M+    S +++SWN++I G+  N
Sbjct: 1203 HVLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMK----SRDLVSWNAIIAGYASN 1258

Query: 447  GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
            G+  +A ++F +  S                                 LET IKP + T+
Sbjct: 1259 GEWLKALELFSEFIS---------------------------------LET-IKPDSVTL 1284

Query: 507  TCALSACTDVASLRNGRAIHGYLIRHD-LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
               L AC  V +L+  + IHGY+IRH  L   T +  +L+  YAKC     A + F +  
Sbjct: 1285 VSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMIS 1344

Query: 566  SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN---ACSHAGLVNE 622
             K+L  +NA++  +   G     + L   + ++GI PDSIT   I+    A S    V E
Sbjct: 1345 RKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKE 1404

Query: 623  --GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
                 +  G+       P++ +   +++  ++CGN+  A+ +  ++    +     S++S
Sbjct: 1405 THSYSIRFGLLQG-DAXPTLGN--GMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMIS 1461

Query: 681  TCVKSNETELAEYI 694
              V S+  + A  I
Sbjct: 1462 GYVTSSSHDDAYAI 1475


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 239/815 (29%), Positives = 376/815 (46%), Gaps = 88/815 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+ S  K  +EA+ L   M              +L  C   R++  G  +HA  L+ G 
Sbjct: 30  ISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFRELRDGILVHALSLERG- 88

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK-ALIG 169
            F +N  V T L+  Y KC  L  A  +F  +  KNV +W A++G+    G   K A+  
Sbjct: 89  -FFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVEL 147

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  M  +GV  +     NVL +      +  G+ +H  V +      VFV ++L++ Y K
Sbjct: 148 FTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTK 207

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG L +ARKVFDGM  R+V  WNSMI  Y  +  + EA  +F  M  EG    RV+  SI
Sbjct: 208 CGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSI 267

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           L A  N + L  GK           ELD  +G+++I  Y++    EDA  VF RM + ++
Sbjct: 268 LDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNL 327

Query: 350 VTWNLLIASYVQSGQ--------------------------------------------- 364
           +TW+ +I ++   G                                              
Sbjct: 328 ITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLL 387

Query: 365 -------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                      + +++V++Y +CE  D+A+ VF+ + L +++ WN+++  Y    R  +A
Sbjct: 388 ITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDA 447

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM---QSLGVQP-------- 466
            +LF  MQ +GI P+ +++ + ILG    G     + +  Q      LG  P        
Sbjct: 448 LQLFRTMQQQGIQPDRVNFMT-ILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVN 506

Query: 467 ---------------------NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
                                 +  W  LI+G   +    EA+  +Q++    I     T
Sbjct: 507 MYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVT 566

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
               L+ACT   SL  G+ IH   +   L     +  +L +MY+KCG++  A+R+FD  P
Sbjct: 567 FISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMP 626

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            +    +N M+  YA HG + E L L + ++Q+G+  + ITF ++L++CSHAGL+ EG +
Sbjct: 627 IRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQ 686

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
            F  +  D  ++   EH+GC+V+LL R G L EA + I  MP +P      SLL  C   
Sbjct: 687 YFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQ 746

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
            + +  +  +  LL+L+P N    V LSN Y+  G W   +++R  M  + ++K PG S 
Sbjct: 747 KDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISS 806

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           IQ+  ++H F   D SHP+  EIY  +  L   +R
Sbjct: 807 IQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMR 841



 Score =  282 bits (721), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 186/636 (29%), Positives = 312/636 (49%), Gaps = 103/636 (16%)

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
            Y++C +L  A   F ++R +NV SW  +I         ++AL  F  M  +GV+P+   
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           L  VL +CG+   +  G  VH   L+ GF     VA++L++MYGKCG L +A+ VF+ M 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 245 ARNVVAWNSMIVGY-VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
            +NVV WN+M+  Y +Q    + A+ +F  M LEGV+   ++  ++L++  + DAL +GK
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
             H+    +   LD  + ++++N Y+K G L DA  VF  M  R + TWN +I++Y  S 
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 364 QS----------------------------------------------------DVVVAS 371
           +S                                                    D+ V +
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGT 300

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
           +++ MYA+C   ++A QVF  +   +++ W+ ++ A+AD G  GEA R F  MQ EGI P
Sbjct: 301 ALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILP 360

Query: 432 NIISWNSVILGF--------------------------LRNGQMN---------EAKDMF 456
           N +++ S++ GF                          +RN  +N         +A+ +F
Sbjct: 361 NRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVF 420

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            Q++     PNLI+W ++I    Q    ++A+  F+ M + GI+P        L ACT  
Sbjct: 421 DQLE----LPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIG 476

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           +  R  + +H  +    L     + TSLV+MYAK G +  A+ +      +++  +N +I
Sbjct: 477 SHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLI 536

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMF 631
           +GYA+HG + EAL  ++ LQ + I  D +TF ++LNAC+ +  + EG  +       G+ 
Sbjct: 537 NGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLD 596

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
           SD  VK ++       N+ S+CG+++ A R+  +MP
Sbjct: 597 SDVIVKNAL------TNMYSKCGSMENARRIFDSMP 626


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 225/660 (34%), Positives = 339/660 (51%), Gaps = 90/660 (13%)

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           SP   +L + L++  A G     R VH  +L   F   +F+ + LID+YGKC  L++ARK
Sbjct: 16  SPFAKLLDSCLRSRSARG----TRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARK 71

Query: 239 VFDGMIARNVV-------------------------------AWNSMIVGYVQNGLNEEA 267
           +FD M  RN                                 +WNSM+ G+ Q+   EE+
Sbjct: 72  LFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEES 131

Query: 268 IRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327
           +  F +M  E       S  S LSA A L  L+ G Q HA+   +    D  +GS++I+ 
Sbjct: 132 LEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDM 191

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVA 370
           YSK G +  AE VFS M+ER++VTWN LI  Y Q+G                 + D V  
Sbjct: 192 YSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTL 251

Query: 371 SSIVDMYAKCERIDNAKQVFNSII-----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           +S+V   A    +    Q+   ++       D+VL N L+  YA   +  EA R+F +M 
Sbjct: 252 ASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMS 311

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
           +     N++S  S++ G+ R   +  A+ MF +M     Q N+++W  LI+G TQN    
Sbjct: 312 IR----NVVSETSMVSGYARAASVKAARFMFSKM----TQRNVVSWNALIAGYTQNGENE 363

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
           EA+  F+ +    I P+  T                     G L++ D+     +  SL+
Sbjct: 364 EALRLFRLLKRESIWPTHYTF--------------------GNLLKSDIF----VGNSLI 399

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           DMY KCG+I    RVF+    ++   +NA+I GYA +G   EAL +F+ +   G  PD +
Sbjct: 400 DMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHV 459

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           T   +L ACSHAGLV EG   F  M  +H + P  +H+ C+V+LL R G L+EA  +I  
Sbjct: 460 TMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEA 518

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MP +PDA + GSLL+ C      E+ ++ +E LL+++P N G YV LSN YA  GRW +V
Sbjct: 519 MPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDV 578

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
            +VR +M+++G+ K PGCSWI++   +HVF+  D+SHP  ++IY+ L +L   ++ V  +
Sbjct: 579 VRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYI 638



 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 166/546 (30%), Positives = 270/546 (49%), Gaps = 68/546 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           + +LL  C+  R     + +HARIL     F+   +++ +L+  Y KCD LD A +LF R
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQ--FSMEIFIQNRLIDVYGKCDCLDDARKLFDR 75

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKA--LIG-----------------------------F 170
           +  +N F+W ++I +  + G  ++A  L G                             F
Sbjct: 76  MPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYF 135

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           V+M  +    + +   + L AC  L  +  G  VH  V K  +   V++ S+LIDMY KC
Sbjct: 136 VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKC 195

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +  A +VF GMI RN+V WNS+I  Y QNG   EA+ VF  M   G+EP  V++ S++
Sbjct: 196 GSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVV 255

Query: 291 SASANLDALDEGKQAHA-VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           SA A+L AL EG Q HA V   N    D VLG+++++ Y+K   + +A  VF RM  R++
Sbjct: 256 SACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNV 315

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
           V+                   +S+V  YA+   +  A+ +F+ +  R+VV WN L+A Y 
Sbjct: 316 VS------------------ETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYT 357

Query: 410 DLGRSGEASRLFYQMQLEGISP-----------NIISWNSVILGFLRNGQMNEAKDMFLQ 458
             G + EA RLF  ++ E I P           +I   NS+I  +++ G + +   +F +
Sbjct: 358 QNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEK 417

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           M+    + + ++W  +I G  QN  G EA+  F++ML  G KP   T+   L AC+    
Sbjct: 418 MK----ERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGL 473

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMIS 577
           +  GR     +  H L       T +VD+  + G +++AK + +  P + +  V+ ++++
Sbjct: 474 VEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLA 533

Query: 578 GYAMHG 583
              +HG
Sbjct: 534 ACKVHG 539



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 217/468 (46%), Gaps = 83/468 (17%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +S  ++  +  E+++   +M   +F +    +G  L  C    D+  G Q+HA +
Sbjct: 114 SWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALV 173

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K+   ++ + Y+ + L+  Y+KC ++  A  +F  +  +N+ +W ++I    + G + +
Sbjct: 174 SKSR--YSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASE 231

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVFVASSLI 224
           AL  FV M + G+ PD   L +V+ AC +L  +  G  +H  V+K   F   + + ++L+
Sbjct: 232 ALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALV 291

Query: 225 DMYGKCGDLEEARKVFD-------------------------------GMIARNVVAWNS 253
           DMY KC  + EAR+VFD                                M  RNVV+WN+
Sbjct: 292 DMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNA 351

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           +I GY QNG NEEA+R+F  +  E + PT  +  ++L +                     
Sbjct: 352 LIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKS--------------------- 390

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373
              D  +G+S+I+ Y K G +ED   VF +M ERD V+WN +I  Y Q+G          
Sbjct: 391 ---DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYG-------- 439

Query: 374 VDMYAKCERIDNAKQVFNSIIL----RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
                       A Q+F  +++     D V    +L A +  G   E    F+ M+  G+
Sbjct: 440 ----------AEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGL 489

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            P    +  ++    R G +NEAK++   ++++ V P+ + W +L++ 
Sbjct: 490 IPLKDHYTCMVDLLGRAGCLNEAKNL---IEAMPVNPDAVVWGSLLAA 534



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P+++     L +C    S R  R +H  ++     +   I   L+D+Y KC  +  A+++
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           FD  P +    +N++IS     G   EA  LF ++ +    PD  ++ ++++  +     
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPE----PDQCSWNSMVSGFAQHDRF 128

Query: 621 NEGLELFVGM 630
            E LE FV M
Sbjct: 129 EESLEYFVKM 138


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 222/698 (31%), Positives = 369/698 (52%), Gaps = 54/698 (7%)

Query: 107 KNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA 166
           +NG F  +     T     ++ C  + +++    R   + V  + A I   C++G  E A
Sbjct: 27  QNGCFIHKPTSKATFFSPIFSSCLPIRISATP-TRTIDRQVTDYNAKILHFCQLGNLENA 85

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
           +      Q+  +    +   +VL+ C     +  G+ VH  +          +   L+ +
Sbjct: 86  MELVCMCQKSELETKTY--SSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSL 143

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           Y  CGDL+E R+VFD M  +NV  WN M+  Y + G  +E+I +F  M  +G+E  R   
Sbjct: 144 YATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPE- 202

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-- 344
               SAS   D L               + D +  +S+I+ Y   GL E    ++ +M  
Sbjct: 203 ----SASELFDKL--------------CDRDVISWNSMISGYVSNGLTERGLEIYKQMMY 244

Query: 345 --VERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDN 385
             ++ D+ T   ++     SG                 +  +  +++++DMY+KC  +D 
Sbjct: 245 LGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDG 304

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A +VF  +  R+VV W +++A Y   GRS  A RL  QM+ EG+  ++++  S++    R
Sbjct: 305 ALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACAR 364

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI------ 499
           +G ++  KD+   +++  ++ NL     L+   T+    + A   F  M+   I      
Sbjct: 365 SGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTM 424

Query: 500 ----KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
               KP + T+ C L AC  +++L  G+ IHGY++R+       +  +LVD+Y KCG + 
Sbjct: 425 IGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLG 484

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
            A+ +FD+ PSK+L  +  MISGY MHG   EA+A F  ++  GI+PD ++F +IL ACS
Sbjct: 485 LARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS 544

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           H+GL+ +G   F  M +D  ++P +EH+ C+V+LLSR GNL +A   I T+P  PDA I 
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIW 604

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
           G+LL  C   ++ ELAE ++E + +LEP+N G YV L+N YA + +W EV ++R+ + +K
Sbjct: 605 GALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKK 664

Query: 736 GLRKNPGCSWIQIGEELHVFVACDR-SHPKTEEIYATL 772
           GLRKNPGCSWI+I  ++++FV+ +  SHP +++I + L
Sbjct: 665 GLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLL 702



 Score =  207 bits (528), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/525 (27%), Positives = 244/525 (46%), Gaps = 88/525 (16%)

Query: 72  CRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131
           C+  ++  + Y  +LQ C   + +  G+++H+ I  N    A +E +  KLV  YA C  
Sbjct: 92  CQKSELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNN--VAVDEVLGLKLVSLYATCGD 149

Query: 132 LDVASRLFCRLRVKNVF------------------------------------------- 148
           L    R+F  +  KNV+                                           
Sbjct: 150 LKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFD 209

Query: 149 --------SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
                   SW ++I      GL+E+ L  + +M   G+  D   + +VL  C   G +  
Sbjct: 210 KLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSL 269

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+AVH   +K  F+  +  +++L+DMY KCGDL+ A +VF+ M  RNVV+W SMI GY +
Sbjct: 270 GKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTR 329

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +G ++ AIR+  +M  EGV+   V+ TSIL A A   +LD GK  H     N ME +  +
Sbjct: 330 DGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFV 389

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA-------------------SYVQ 361
            +++++ Y+K G ++ A  VFS MV +DI++WN +I                    S ++
Sbjct: 390 CNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALE 449

Query: 362 SGQ------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
            G+            SD  VA+++VD+Y KC  +  A+ +F+ I  +D+V W  +++ Y 
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYG 509

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNL 468
             G   EA   F +M+  GI P+ +S+ S++     +G + +    F  M++   ++P L
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
             +  ++  L++    ++A  F + +    I P  T     L  C
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFIETL---PIAPDATIWGALLCGC 611


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  369 bits (946), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 216/638 (33%), Positives = 324/638 (50%), Gaps = 67/638 (10%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS-------- 253
           R VH  V+K GF   VF+ + LID Y KCG LE+ R++FD M  RNV  WNS        
Sbjct: 40  RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKL 99

Query: 254 -----------------------MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
                                  M+ G+ Q+   EEA+  F  M  EG      +  S L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGL 159

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA + L+ ++ G Q H++   +    D  +GS++++ YSK G + DA+ VF  M +R++V
Sbjct: 160 SACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVV 219

Query: 351 TWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           +WN LI  Y Q+G                 + D V  +S++   A    I   ++V   +
Sbjct: 220 SWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARV 279

Query: 394 I----LR-DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           +    LR D++L N  +  YA   R  EA  +F  M +     N+I+  S++ G+     
Sbjct: 280 VKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR----NVIAETSMVSGYAMAAS 335

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
              A+ MF +M     + N+++W  LI+G TQN    EA+  F  +    + P+  T   
Sbjct: 336 TKAARLMFTKM----AERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFAN 391

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTP------IVTSLVDMYAKCGNIHQAKRVFD 562
            L AC D+A L  G   H ++++H     +       +  SL+DMY KCG + +   VF 
Sbjct: 392 ILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR 451

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               ++   +NAMI G+A +G   EAL LF+ +   G  PD IT   +L+AC HAG V E
Sbjct: 452 KMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEE 511

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G   F  M  D  V P  +H+ C+V+LL R G L+EA  +I  MP  PD+ I GSLL+ C
Sbjct: 512 GRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAAC 571

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
                  L +Y++E L ++E  N G YV LSN YA  G+W +   VR +M+++G+ K PG
Sbjct: 572 KVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPG 631

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           CSWI+I    HVF+  D+SHP+ ++I++ L +L   +R
Sbjct: 632 CSWIKIPGHAHVFMVKDKSHPRKKQIHSLLDILIAEMR 669



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 152/565 (26%), Positives = 263/565 (46%), Gaps = 104/565 (18%)

Query: 82  YGELLQGCV-YKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
           + +LL  C+  K      + +HA ++K+G  F+   +++ +L+  YAKC +L+   +LF 
Sbjct: 22  FAKLLDSCIKLKLSAIDVRCVHASVIKSG--FSNEVFIQNRLIDAYAKCGSLEDGRQLFD 79

Query: 141 RLRVKNVFSWAAIIGLNCRVGL-------------------------------SEKALIG 169
           ++  +NVF+W +++    ++G                                 E+AL  
Sbjct: 80  KMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYY 139

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  M ++G   + +   + L AC  L  +  G  +H  + K      V++ S+L+DMY K
Sbjct: 140 FAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSK 199

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG++ +A++VFD M  RNVV+WNS+I  Y QNG   EA++VF  M    VEP  V++ S+
Sbjct: 200 CGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASV 259

Query: 290 LSASANLDALDEGKQAHA-VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
           +SA A+L A+  G++ HA V  ++ +  D +L ++ ++ Y+K   +++A  +F  M  R 
Sbjct: 260 ISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR- 318

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                            +V+  +S+V  YA       A+ +F  +  R+VV WN L+A Y
Sbjct: 319 -----------------NVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGY 361

Query: 409 ADLGRSGEASRLFYQMQLEGISP------------------------------------- 431
              G + EA  LF  ++ E + P                                     
Sbjct: 362 TQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQS 421

Query: 432 ----NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
               +I   NS+I  +++ G + E   +F +M    ++ + ++W  +I G  QN  GNEA
Sbjct: 422 GEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM----MERDCVSWNAMIIGFAQNGYGNEA 477

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP-TPIVTSLVD 546
           +  F+EML++G KP   T+   LSAC     +  GR     + R     P     T +VD
Sbjct: 478 LELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVD 537

Query: 547 MYAKCGNIHQAKRVFDISPSKELPV 571
           +  + G + +AK + +     E+PV
Sbjct: 538 LLGRAGFLEEAKSIIE-----EMPV 557



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 139/493 (28%), Positives = 234/493 (47%), Gaps = 62/493 (12%)

Query: 28  THLTKLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG 83
           T L  L E+D+ + S+ +    ++   +S  ++  +  EA+     M    F +    + 
Sbjct: 97  TKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFA 156

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
             L  C    DM  G QIH+ I K+      + Y+ + LV  Y+KC  ++ A ++F  + 
Sbjct: 157 SGLSACSGLNDMNRGVQIHSLIAKSPCL--SDVYIGSALVDMYSKCGNVNDAQQVFDEMG 214

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            +NV SW ++I    + G + +AL  F  M E  V PD   L +V+ AC +L  +  G+ 
Sbjct: 215 DRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQE 274

Query: 204 VHGYVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDG-------------------- 242
           VH  V+K+      + ++++ +DMY KC  ++EAR +FD                     
Sbjct: 275 VHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAA 334

Query: 243 -----------MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
                      M  RNVV+WN++I GY QNG NEEA+ +F  +  E V PT  +  +IL 
Sbjct: 335 STKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILK 394

Query: 292 ASANLDALDEGKQAHAVAVINGM------ELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           A A+L  L  G QAH   + +G       E D  +G+S+I+ Y K G +E+  +VF +M+
Sbjct: 395 ACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMM 454

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           ERD V+WN +I  + Q+G  +              E ++  +++ +S    D +    +L
Sbjct: 455 ERDCVSWNAMIIGFAQNGYGN--------------EALELFREMLDSGEKPDHITMIGVL 500

Query: 406 AAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           +A    G   E    F  M  + G++P    +  ++    R G + EAK +  +M    V
Sbjct: 501 SACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMP---V 557

Query: 465 QPNLITWTTLISG 477
           QP+ + W +L++ 
Sbjct: 558 QPDSVIWGSLLAA 570


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  369 bits (946), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 237/762 (31%), Positives = 388/762 (50%), Gaps = 80/762 (10%)

Query: 49  HQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKN 108
            QI  L K  ++ EA+ +   M  +N               V    M +    +ARI   
Sbjct: 22  RQIIQLGKLGKVEEAIRIFFNMTHKNL--------------VTYNSMISVLAKNARIRDA 67

Query: 109 GDFFA----RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
              F     RN      ++  Y   + ++ AS LF  +  ++ FSWA +I    R G  E
Sbjct: 68  RQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLE 127

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLK-ACGALGWVGFGRAVHGYVLKVGFDGCVFV---- 219
           KA     E+ E        ++P+ L  AC       +   + GY  K  F+    V    
Sbjct: 128 KAR----ELLE--------LVPDKLDTAC-------WNAMIAGYAKKGQFNDAKKVFEQM 168

Query: 220 -------ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
                   +S++  Y + G +  A + F+ M  RNVV+WN M+ GYV++G    A ++F 
Sbjct: 169 PAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFE 228

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKV 331
           ++      P  VS  ++L   A       GK A A  + + M   NV+  +++I  Y + 
Sbjct: 229 KIP----NPNAVSWVTMLCGLAKY-----GKMAEARELFDRMPSKNVVSWNAMIATYVQD 279

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYA 378
             +++A  +F +M  +D V+W  +I  Y++ G+              D+   ++++    
Sbjct: 280 LQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLI 339

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
           +  RID A Q+F+ I   DVV WN+++A Y+  GR  EA  LF QM ++    N +SWN+
Sbjct: 340 QNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIK----NSVSWNT 395

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I G+ + GQM+ A ++F  M+    + N+++W +LI+G  QN+   +A+     M + G
Sbjct: 396 MISGYAQAGQMDRATEIFQAMR----EKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEG 451

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
            KP  +T  C LSAC ++A+L+ G  +H Y+++        +  +L+ MYAKCG +  A+
Sbjct: 452 KKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAE 511

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           +VF      +L  +N++ISGYA++G A +A   F+ +  + + PD +TF  +L+ACSHAG
Sbjct: 512 QVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAG 571

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           L N+GL++F  M  D  ++P  EH+ C+V+LL R G L+EA   +  M    +A + GSL
Sbjct: 572 LANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSL 631

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L  C      EL  + +E L +LEP N  NY+ LSN +A +GRW EV +VR +M+ K   
Sbjct: 632 LGACRVHKNLELGRFAAERLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLMRGKRAG 691

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           K PGCSWI++  ++  F++ D +  + + I   L  L  H+R
Sbjct: 692 KQPGCSWIEVQNQIQHFLSHDPAKLRPKNIQIILNTLAAHMR 733



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 130/529 (24%), Positives = 244/529 (46%), Gaps = 81/529 (15%)

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N  I+   + G  EEAIR+F+ MT + +    V+  S++S  A    + + +Q     + 
Sbjct: 21  NRQIIQLGKLGKVEEAIRIFFNMTHKNL----VTYNSMISVLAKNARIRDARQ-----LF 71

Query: 312 NGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------- 363
           + M L N++  +++I  Y    ++E+A  +F  M ERD  +W L+I  Y + G       
Sbjct: 72  DQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKARE 131

Query: 364 -------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
                  + D    ++++  YAK  + ++AK+VF  +  +D+V +N++LA Y   G+   
Sbjct: 132 LLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHL 191

Query: 417 ASRLFYQMQLEGI---------------------------SPNIISWNSVILGFLRNGQM 449
           A + F  M    +                           +PN +SW +++ G  + G+M
Sbjct: 192 ALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKM 251

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
            EA+++F +M S     N+++W  +I+   Q+   +EA+  F++M        + + T  
Sbjct: 252 AEARELFDRMPS----KNVVSWNAMIATYVQDLQVDEAVKLFKKMPH----KDSVSWTTI 303

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           ++    V  L   R ++  +   D+   T +++ L+    + G I +A ++F    + ++
Sbjct: 304 INGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLI----QNGRIDEADQMFSRIGAHDV 359

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +N+MI+GY+  G   EAL LF+ +  K    +S+++  +++  + AG ++   E+F  
Sbjct: 360 VCWNSMIAGYSRSGRMDEALNLFRQMPIK----NSVSWNTMISGYAQAGQMDRATEIFQA 415

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD---PDAHIIGSLLSTCVKSN 686
           M   + V  +    G + N L     LD AL+ ++ M  +   PD       LS C    
Sbjct: 416 MREKNIVSWNSLIAGFLQNNLY----LD-ALKSLVMMGKEGKKPDQSTFACTLSACANLA 470

Query: 687 ETELAEYISEHLLQLEPDNP---GNYVALSNAYAASGRWNEVSQV-RDI 731
             ++   + E++L+    N    GN  AL   YA  GR     QV RDI
Sbjct: 471 ALQVGNQLHEYILKSGYMNDLFVGN--ALIAMYAKCGRVQSAEQVFRDI 517


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  369 bits (946), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 209/638 (32%), Positives = 336/638 (52%), Gaps = 81/638 (12%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M    V+P+N+  P  LKAC AL     GRA+H + +  G    +FV+++L+DMY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR--VFYEMTLEGVEPTRVSVTSIL 290
           L +A  +F  M AR++VAWN+M+ GY  +G+   A+   +  +M +  + P   ++ ++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
              A   AL +G   HA  +                                    R  +
Sbjct: 121 PLLAQQGALAQGTSVHAYCI------------------------------------RACL 144

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
             N    S +  G   V++ ++++DMYAKC  +  A++VF+++  R+ V W+ L+  +  
Sbjct: 145 HPNRNSKSKLTDG---VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVL 201

Query: 411 LGRSGEASRLFYQMQLEGI---SP---------------------------------NII 434
             R  +A  LF  M  +G+   SP                                 ++ 
Sbjct: 202 CSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLT 261

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           + NS++  + + G +++A  +F +M       + ++++ L+SG  QN    EA L F++M
Sbjct: 262 AGNSLLSMYAKAGLIDQAIALFDEM----AVKDTVSYSALVSGYVQNGRAEEAFLVFKKM 317

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
               ++P   T+   + AC+ +A+L++GR  HG +I   L   T I  +L+DMYAKCG I
Sbjct: 318 QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRI 377

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             +++VF++ PS+++  +N MI+GY +HGL  EA ALF  +   G  PD +TF  +L+AC
Sbjct: 378 DLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSAC 437

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
           SH+GLV EG   F  M   + + P MEH+ C+V+LLSR G LDEA   I +MP   D  +
Sbjct: 438 SHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRV 497

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
             +LL  C      +L + +S  + +L P+  GN+V LSN Y+A+GR++E ++VR I K 
Sbjct: 498 WVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKV 557

Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           +G +K+PGCSWI+I   LH FV  D+SHP++ EIY  L
Sbjct: 558 QGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 595



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 226/478 (47%), Gaps = 74/478 (15%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L+ C    D + G+ IH   +  G     + +V T L+  Y KC  L  A+ +F  +  +
Sbjct: 17  LKACSALADHHCGRAIHRHAIHAG--LQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 74

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFV--EMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
           ++ +W A++      G+   A+   +  +MQ   + P+   L  +L      G +  G +
Sbjct: 75  DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 134

Query: 204 VHGYVLKVGF-----------DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
           VH Y ++              DG V + ++L+DMY KCG L  AR+VFD M ARN V W+
Sbjct: 135 VHAYCIRACLHPNRNSKSKLTDG-VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 193

Query: 253 SMIVGYVQNGLNEEAIRVFYEMTLEG---VEPTRVSVTSILSASANLDALDEGKQAHAVA 309
           ++I G+V      +A  +F  M  +G   + PT  S+ S L A A+LD L  G+Q HA+ 
Sbjct: 194 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALL 251

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----- 364
             +G+  D   G+S+++ Y+K GL++ A  +F  M  +D V+++ L++ YVQ+G+     
Sbjct: 252 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 311

Query: 365 -----------------------------------------------SDVVVASSIVDMY 377
                                                          S+  + ++++DMY
Sbjct: 312 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMY 371

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           AKC RID ++QVFN +  RD+V WNT++A Y   G   EA+ LF +M   G  P+ +++ 
Sbjct: 372 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 431

Query: 438 SVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
            ++     +G + E K  F  M    G+ P +  +  ++  L++    +EA  F Q M
Sbjct: 432 CLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSM 489



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 183/360 (50%), Gaps = 23/360 (6%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-- 177
           T L+  YAKC +L  A R+F  +  +N  +W+A+IG         +A + F  M   G  
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 178 -VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
            +SP +  + + L+AC +L  +  G  +H  + K G    +   +SL+ MY K G +++A
Sbjct: 222 FLSPTS--IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 279

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
             +FD M  ++ V++++++ GYVQNG  EEA  VF +M    VEP   ++ S++ A ++L
Sbjct: 280 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 339

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            AL  G+ +H   +I G+  +  + +++I+ Y+K G ++ +  VF+ M  RDIV+WN +I
Sbjct: 340 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 399

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
           A Y   G      A  +              ++ N     D V +  LL+A +  G   E
Sbjct: 400 AGYGIHGLGKEATALFL--------------EMNNLGFPPDGVTFICLLSACSHSGLVIE 445

Query: 417 ASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
               F+ M    G++P +  +  ++    R G ++EA +    +QS+ ++ ++  W  L+
Sbjct: 446 GKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF---IQSMPLRADVRVWVALL 502



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 196/417 (47%), Gaps = 55/417 (13%)

Query: 77  IGPEIYGELLQGCVYKRDMYTGQQIHARILKNG---DFFARNEYVETKLVVFYAKCDALD 133
           + P      L+ C     +  G+Q+HA + K+G   D  A N      L+  YAK   +D
Sbjct: 223 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNS-----LLSMYAKAGLID 277

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACG 193
            A  LF  + VK+  S++A++    + G +E+A + F +MQ   V PD   + +++ AC 
Sbjct: 278 QAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACS 337

Query: 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
            L  +  GR  HG V+  G      + ++LIDMY KCG ++ +R+VF+ M +R++V+WN+
Sbjct: 338 HLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT 397

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ-----AHAV 308
           MI GY  +GL +EA  +F EM   G  P  V+   +LSA ++   + EGK       H  
Sbjct: 398 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGY 457

Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTW-NLLIASYVQSGQSD 366
            +   ME    +    ++  S+ G L++A E + S  +  D+  W  LL A  V      
Sbjct: 458 GLTPRMEHYICM----VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKN--- 510

Query: 367 VVVASSIVDMYAKCERIDN---AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
                  +D+  K  R+      +   N ++L ++         Y+  GR  EA+ +   
Sbjct: 511 -------IDLGKKVSRMIQELGPEGTGNFVLLSNI---------YSAAGRFDEAAEVRII 554

Query: 424 MQLEGI--SPNIISW---NSVILGFLRNGQMN--------EAKDMFLQMQSLGVQPN 467
            +++G   SP   SW   N  +  F+   Q +        E  ++ + ++ LG QP+
Sbjct: 555 QKVQGFKKSPG-CSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPD 610


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 228/750 (30%), Positives = 381/750 (50%), Gaps = 71/750 (9%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
           E ++ C   R +   +++HA+++  G     + +++  L+  Y+ C  +  A R+F  + 
Sbjct: 9   ESMKECASLRSIPIARKLHAQLIFMG--LKSSIFLQNHLLNMYSNCGLISDAYRVFGGIM 66

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE-DGVSPDNFV--------LPNVLKACGA 194
             NV+SW  +I      G   +A   F +M E D VS ++ +        L   +KA G+
Sbjct: 67  FPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGS 126

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF-----------DGM 243
           LG++     +HG+  K  F     V +S++DMY KCG ++ A+KVF           + M
Sbjct: 127 LGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSM 186

Query: 244 I--------------------ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           I                     R+ V+WN+MI    Q+G   E +  F EM  +G  P  
Sbjct: 187 IYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNS 246

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           ++  S+LSA  ++  L+ G   HA  V     LD   G  +I+ Y+K G LE A  VF  
Sbjct: 247 MTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDG 306

Query: 344 MVERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNA 386
           + E + V+W  LI    Q+G                  SD    ++++ +    + I   
Sbjct: 307 LTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIG 366

Query: 387 KQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG 442
           +Q+    I R     V + N L+  YA  G   +A+  F  M +     +IISW ++I  
Sbjct: 367 EQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIR----DIISWTAMITA 422

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
           F + G + +A++ F +M     + N+I+W ++++   Q     E +  + +ML  G+K  
Sbjct: 423 FSQAGDVEKAREYFDKMP----ERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTD 478

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
             T + ++SAC D+A L  G  I     +        +  S+V MY++CG I +A+++F 
Sbjct: 479 WITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFS 538

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               K L  +NAM++GYA +G   + + +F+ +   G  PD I++ ++L+ CSH+G V+E
Sbjct: 539 SIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSE 598

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G   F+ M  DH + P  EHF C+V+LL R G L++A  +I  MP  P+A I G+LL+ C
Sbjct: 599 GQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAAC 658

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
                T+LAE   ++LL+L+ + PG+Y  L+N Y+ SG+   V+ VR +M++KG+RKNPG
Sbjct: 659 RIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPG 718

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           CSWI++   +HVF   D +HP+ ++++  L
Sbjct: 719 CSWIEVDNRVHVFTVDDTNHPQIKDVHRML 748


>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 247/823 (30%), Positives = 390/823 (47%), Gaps = 145/823 (17%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCD-ALDVASRLFCRLRVKNVFSWAAIIGLN 157
           +QIHAR++K      ++  +  KLVV Y K   +L+ A +L   +  + V ++AA+I   
Sbjct: 100 RQIHARVVKLNALKWKSS-IGNKLVVLYCKNQWSLEDARKLLDEIPNRTVPAYAALIRSY 158

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
           CR    ++    F  M  +G+ PD +++P +LKAC A+     G+ VHG+V++   +  V
Sbjct: 159 CRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVESDV 218

Query: 218 FVASSLIDMYGKCGDL-------------------------------EEARKVF-----D 241
           FV ++LI  Y  CGDL                               +EA+ +F     D
Sbjct: 219 FVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEGLXDEAKHIFHLMQLD 278

Query: 242 GM-------------IARN---------------------VVAWNSMIVGYVQNGLNEEA 267
           G+              ARN                     V +WN +I G VQNG  E+A
Sbjct: 279 GVKPDLISWSALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDA 338

Query: 268 IRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327
           + +F  M     +P  +++ SIL A   L AL  GK  H +A  +G+  +  +  S+I+ 
Sbjct: 339 LDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDM 398

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-----------------SDVVVA 370
           YSK G  + AE VF +   ++   WN +IA+YV  G+                  DV+  
Sbjct: 399 YSKCGSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITY 458

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQ- 425
           ++I+  +A+      A ++ + ++      +VV +N L++ +   G S EA ++F  MQ 
Sbjct: 459 NTILSGHARNGLKTQAXELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQS 518

Query: 426 ----------------------------------------------LEGISPNIISWNSV 439
                                                           G  PNI   +++
Sbjct: 519 PSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSAL 578

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           +  + +   M+ A  +F ++       N ++W  L++G   N    EA+  F EML  G+
Sbjct: 579 VDMYAKCHDMDSANKVFFRIDGR----NTVSWNALMAGYINNKQPEEALKLFLEMLGEGL 634

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC-LPTPIVTSLVDMYAKCGNIHQAK 558
           +PS+ T      AC D+A++R GR +HGY  +  L  L   I ++L+DMYAKCG+I  AK
Sbjct: 635 QPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSILDAK 694

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
            VFD    K++P++NAMIS +++HG+A  A A+F  ++  GI PD ITF ++L+AC+  G
Sbjct: 695 SVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFXQMELLGIXPDHITFVSLLSACARDG 754

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           LV EG + F  M   + V  ++EH+ C+V +L   G LDEAL  I  MP  PDA +  +L
Sbjct: 755 LVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATL 814

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L  C   +  E+ E  ++ L +LEPDN  NY+ LSN Y +SG W+    +R  M+ + L 
Sbjct: 815 LQACRVHSNPEIGERAAKALFELEPDNATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKLL 874

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
               CS++ +G     F   + SHP+ EEI  T   L   + L
Sbjct: 875 TIKECSYLTVGSHXCTFKGGESSHPELEEILETWDXLARKMEL 917



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 11/239 (4%)

Query: 58  KQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEY 117
           KQ  EA+ L  EM     Q     +  L   C     +  G+ +H    K      +N  
Sbjct: 617 KQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNA- 675

Query: 118 VETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177
           + + L+  YAKC ++  A  +F     K+V  W A+I      G++  A   F +M+  G
Sbjct: 676 IXSALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFXQMELLG 735

Query: 178 VSPDNFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           + PD+    ++L AC   G V  G +  +   +  G    +   + ++ + G  G L+EA
Sbjct: 736 IXPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEA 795

Query: 237 RKVFDGM-IARNVVAWNSMIVG---YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
                 M    +   W +++     +    + E A +  +E+     EP   +   +LS
Sbjct: 796 LDFIRQMPYPPDACMWATLLQACRVHSNPEIGERAAKALFEL-----EPDNATNYMLLS 849


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  368 bits (945), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 209/638 (32%), Positives = 336/638 (52%), Gaps = 81/638 (12%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M    V+P+N+  P  LKAC AL     GRA+H + +  G    +FV+++L+DMY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR--VFYEMTLEGVEPTRVSVTSIL 290
           L +A  +F  M AR++VAWN+M+ GY  +G+   A+   +  +M +  + P   ++ ++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
              A   AL +G   HA  +                                    R  +
Sbjct: 121 PLLAQQGALAQGTSVHAYCI------------------------------------RACL 144

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
             N    S +  G   V++ ++++DMYAKC  +  A++VF+++  R+ V W+ L+  +  
Sbjct: 145 HPNRNSKSKLTDG---VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVL 201

Query: 411 LGRSGEASRLFYQMQLEGI---SP---------------------------------NII 434
             R  +A  LF  M  +G+   SP                                 ++ 
Sbjct: 202 CSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLT 261

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           + NS++  + + G +++A  +F +M       + ++++ L+SG  QN    EA L F++M
Sbjct: 262 AGNSLLSMYAKAGLIDQAIALFDEM----AVKDTVSYSALVSGYVQNGRAEEAFLVFKKM 317

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
               ++P   T+   + AC+ +A+L++GR  HG +I   L   T I  +L+DMYAKCG I
Sbjct: 318 QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRI 377

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             +++VF++ PS+++  +N MI+GY +HGL  EA ALF  +   G  PD +TF  +L+AC
Sbjct: 378 DLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSAC 437

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
           SH+GLV EG   F  M   + + P MEH+ C+V+LLSR G LDEA   I +MP   D  +
Sbjct: 438 SHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRV 497

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
             +LL  C      +L + +S  + +L P+  GN+V LSN Y+A+GR++E ++VR I K 
Sbjct: 498 WVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKV 557

Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           +G +K+PGCSWI+I   LH FV  D+SHP++ EIY  L
Sbjct: 558 QGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 595



 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 226/478 (47%), Gaps = 74/478 (15%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L+ C    D + G+ IH   +  G     + +V T L+  Y KC  L  A+ +F  +  +
Sbjct: 17  LKACSALADHHCGRAIHRHAIHAG--LQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 74

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFV--EMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
           ++ +W A++      G+   A+   +  +MQ   + P+   L  +L      G +  G +
Sbjct: 75  DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 134

Query: 204 VHGYVLKVGF-----------DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
           VH Y ++              DG V + ++L+DMY KCG L  AR+VFD M ARN V W+
Sbjct: 135 VHAYCIRACLHPNRNSKSKLTDG-VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 193

Query: 253 SMIVGYVQNGLNEEAIRVFYEMTLEG---VEPTRVSVTSILSASANLDALDEGKQAHAVA 309
           ++I G+V      +A  +F  M  +G   + PT  S+ S L A A+LD L  G+Q HA+ 
Sbjct: 194 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALL 251

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----- 364
             +G+  D   G+S+++ Y+K GL++ A  +F  M  +D V+++ L++ YVQ+G+     
Sbjct: 252 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 311

Query: 365 -----------------------------------------------SDVVVASSIVDMY 377
                                                          S+  + ++++DMY
Sbjct: 312 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMY 371

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           AKC RID ++QVFN +  RD+V WNT++A Y   G   EA+ LF +M   G  P+ +++ 
Sbjct: 372 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 431

Query: 438 SVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
            ++     +G + E K  F  M    G+ P +  +  ++  L++    +EA  F Q M
Sbjct: 432 CLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSM 489



 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 183/360 (50%), Gaps = 23/360 (6%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-- 177
           T L+  YAKC +L  A R+F  +  +N  +W+A+IG         +A + F  M   G  
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 178 -VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
            +SP +  + + L+AC +L  +  G  +H  + K G    +   +SL+ MY K G +++A
Sbjct: 222 FLSPTS--IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 279

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
             +FD M  ++ V++++++ GYVQNG  EEA  VF +M    VEP   ++ S++ A ++L
Sbjct: 280 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 339

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            AL  G+ +H   +I G+  +  + +++I+ Y+K G ++ +  VF+ M  RDIV+WN +I
Sbjct: 340 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 399

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
           A Y   G      A  +              ++ N     D V +  LL+A +  G   E
Sbjct: 400 AGYGIHGLGKEATALFL--------------EMNNLGFPPDGVTFICLLSACSHSGLVIE 445

Query: 417 ASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
               F+ M    G++P +  +  ++    R G ++EA +    +QS+ ++ ++  W  L+
Sbjct: 446 GKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF---IQSMPLRADVRVWVALL 502



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 196/417 (47%), Gaps = 55/417 (13%)

Query: 77  IGPEIYGELLQGCVYKRDMYTGQQIHARILKNG---DFFARNEYVETKLVVFYAKCDALD 133
           + P      L+ C     +  G+Q+HA + K+G   D  A N      L+  YAK   +D
Sbjct: 223 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNS-----LLSMYAKAGLID 277

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACG 193
            A  LF  + VK+  S++A++    + G +E+A + F +MQ   V PD   + +++ AC 
Sbjct: 278 QAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACS 337

Query: 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
            L  +  GR  HG V+  G      + ++LIDMY KCG ++ +R+VF+ M +R++V+WN+
Sbjct: 338 HLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT 397

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ-----AHAV 308
           MI GY  +GL +EA  +F EM   G  P  V+   +LSA ++   + EGK       H  
Sbjct: 398 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGY 457

Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTW-NLLIASYVQSGQSD 366
            +   ME    +    ++  S+ G L++A E + S  +  D+  W  LL A  V      
Sbjct: 458 GLTPRMEHYICM----VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKN--- 510

Query: 367 VVVASSIVDMYAKCERIDN---AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
                  +D+  K  R+      +   N ++L ++         Y+  GR  EA+ +   
Sbjct: 511 -------IDLGKKVSRMIQELGPEGTGNFVLLSNI---------YSAAGRFDEAAEVRII 554

Query: 424 MQLEGI--SPNIISW---NSVILGFLRNGQMN--------EAKDMFLQMQSLGVQPN 467
            +++G   SP   SW   N  +  F+   Q +        E  ++ + ++ LG QP+
Sbjct: 555 QKVQGFKKSPG-CSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPD 610


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  368 bits (945), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 208/678 (30%), Positives = 344/678 (50%), Gaps = 83/678 (12%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D+     + + C  L   G G+ V  ++++ G    ++  ++LI ++  CG++ EAR+ F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D +  + VV WN++I GY Q G  +EA  +F +M  E +EP+ ++   +L A ++   L 
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            GK+ HA  +  G   D  +G+++++ Y K G ++ A  VF  + +RD+ T+N++I  Y 
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYA 239

Query: 361 QSGQS----------------------------------------------------DVV 368
           +SG                                                      DV 
Sbjct: 240 KSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVR 299

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           VA++++ MY  C  I+ A++VF+ + +RDVV W  ++  YA+     +A  LF  MQ EG
Sbjct: 300 VATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEG 359

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL-------------------- 468
           I P+ I++  +I     +  ++ A+++  Q+   G   +L                    
Sbjct: 360 IQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDAR 419

Query: 469 -----------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
                      ++W+ +I    +N CG EA   F  M    ++P   T    L+AC  + 
Sbjct: 420 QVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLG 479

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           +L  G  I+   I+ DL    P+  +L++M  K G+I +A+ +F+    +++  +N MI 
Sbjct: 480 ALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIG 539

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
           GY++HG A EAL LF  + ++   P+S+TF  +L+ACS AG V EG   F  +     + 
Sbjct: 540 GYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIV 599

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
           P+ME +GC+V+LL R G LDEA  +I  MP  P++ I  +LL+ C      ++AE  +E 
Sbjct: 600 PTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAER 659

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVA 757
            L  EP +   YV LS+ YAA+G W  V++VR +M+ +G+RK  GC+WI++  +LH FV 
Sbjct: 660 CLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVV 719

Query: 758 CDRSHPKTEEIYATLALL 775
            DRSHP+  EIYA LA L
Sbjct: 720 EDRSHPQAGEIYAELARL 737



 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 226/442 (51%), Gaps = 24/442 (5%)

Query: 40  YESLYK---SYFH-QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDM 95
           ++ LYK   S F+  I   +K     +A  L   M+   F+     +  +L GC     +
Sbjct: 220 FDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEAL 279

Query: 96  YTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
             G+ +HA+ +  G     +  V T L+  Y  C +++ A R+F +++V++V SW  +I 
Sbjct: 280 AWGKAVHAQCMNTG--LVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIR 337

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
                   E A   F  MQE+G+ PD     +++ AC +   +   R +H  V++ GF  
Sbjct: 338 GYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGT 397

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            + V ++L+ MY KCG +++AR+VFD M  R+VV+W++MI  YV+NG  EEA   F+ M 
Sbjct: 398 DLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMK 457

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
              VEP  V+  ++L+A  +L ALD G + +  A+   +     +G+++IN   K G +E
Sbjct: 458 RNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIE 517

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
            A  +F  MV+RD+VTWN++I  Y   G      A   +D++   +R+   +   NS+  
Sbjct: 518 RARYIFENMVQRDVVTWNVMIGGYSLHGN-----AREALDLF---DRMLKERFRPNSVTF 569

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLF-YQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
             V      L+A +  G   E  R F Y +   GI P +  +  ++    R G+++EA+ 
Sbjct: 570 VGV------LSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAE- 622

Query: 455 MFLQMQSLGVQPNLITWTTLIS 476
             L +  + ++PN   W+TL++
Sbjct: 623 --LLINRMPLKPNSSIWSTLLA 642


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  368 bits (944), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 237/814 (29%), Positives = 383/814 (47%), Gaps = 97/814 (11%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYK-RD--MYTGQQIHARILKNGDFFARNEYVE 119
           A ++L  M+ R   +       L+  C  + RD  +  G  IHA   + G     N Y+ 
Sbjct: 25  AFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAG--LMGNVYIG 82

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           T L+  Y     +  A RLF  +  +NV SW A++      G  E+AL  + +M+ DGV 
Sbjct: 83  TALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVP 142

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
            +      V+  CG+L     G  V   V+  G    V VA+SLI M+G  G + +A K+
Sbjct: 143 CNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKL 202

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD M   + ++WN+MI  Y   G+  +   VF +M   G+ P   ++ S++S  A+ D  
Sbjct: 203 FDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHF 262

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
             G   H++ + + ++    + ++++N YS  G L DAE +F  M  RD+++WN +I+SY
Sbjct: 263 SHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSY 322

Query: 360 VQ----------------------------------------------------SGQSDV 367
           VQ                                                    S Q ++
Sbjct: 323 VQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNL 382

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           +V +S++ MY KC  +++A++VF S+   D+V +N L+  YA L    +A ++F  M+  
Sbjct: 383 LVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSA 442

Query: 428 GISPNIISW------------------------------------NSVILGFLRNGQMNE 451
           GI PN I+                                     NS+I  + + G +  
Sbjct: 443 GIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLES 502

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           + ++F  +       N+++W  +I+   Q   G EA+  F +M   G K     +   LS
Sbjct: 503 STNIFNSI----TNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLS 558

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           +C  +ASL  G  +HG  ++  L   + +V + +DMY KCG + +  +V      +    
Sbjct: 559 SCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQC 618

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           +N +ISGYA +G   EA   FK +   G  PD +TF  +L+ACSHAGLV++G++ +  M 
Sbjct: 619 WNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMA 678

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
           S   V P ++H  C+V+LL R G   EA + I  MP  P+  I  SLLS+       E+ 
Sbjct: 679 SSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIG 738

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
              ++ LL+L+P +   YV LSN YA + RW +V ++R  MK   + K P CSW+++  E
Sbjct: 739 RKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPACSWLKLKNE 798

Query: 752 LHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           +  F   DR H   E+IYA L  + + +R V  +
Sbjct: 799 VSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYI 832



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 152/616 (24%), Positives = 273/616 (44%), Gaps = 102/616 (16%)

Query: 149 SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG---WVGFGRAVH 205
           +W   +    R G    A      M+E GV    F L +++ AC   G    +  G A+H
Sbjct: 8   TWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIH 67

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
               + G  G V++ ++L+ +YG  G + +A+++F  M  RNVV+W +++V    NG  E
Sbjct: 68  ALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLE 127

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           EA+R + +M  +GV     +  +++S   +L+    G Q  +  +++G++    + +S+I
Sbjct: 128 EALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLI 187

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------------- 363
             +  +G + DAE +F RM E D ++WN +I+ Y   G                      
Sbjct: 188 TMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDAT 247

Query: 364 ------------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
                                          S V V +++V+MY+   ++ +A+ +F ++
Sbjct: 248 TLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM 307

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI------------- 440
             RD++ WNT++++Y     S +A +   Q+     SPN ++++S +             
Sbjct: 308 SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGK 367

Query: 441 --------LGFLRN-----------GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
                   L   RN           G+ N  +D     QS+    +++++  LI G    
Sbjct: 368 MVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH-DIVSYNVLIGGYAVL 426

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN-GRAIHGYLIRHDLCLPTPI 540
             G +A+  F  M   GIKP+  T+     +      L N GR +H Y+IR        +
Sbjct: 427 EDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYV 486

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
             SL+ MYAKCGN+  +  +F+   +K +  +NA+I+     G   EAL LF ++Q  G 
Sbjct: 487 ANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGN 546

Query: 601 DPDSITFTNILNACSHAGLVNEGLELF-----VGMFSD-HQVKPSMEHFGCVVNLLSRCG 654
             D +     L++C+    + EG++L       G+ SD + V  +M+ +G       +CG
Sbjct: 547 KLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYG-------KCG 599

Query: 655 NLDEALRVILTMPCDP 670
            +DE L+V+      P
Sbjct: 600 KMDEMLQVVPDQAIRP 615


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/561 (34%), Positives = 327/561 (58%), Gaps = 40/561 (7%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
           V   +++I  Y KCG +EEAR++FD + A+ NVV W +M+ GY+++    +A ++F EM 
Sbjct: 83  VITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMP 142

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLL 334
            + V    VS  +++   A       G+   A+ +   M   NV+  +++++  ++ G +
Sbjct: 143 NKNV----VSWNTMIDGYAQ-----NGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRI 193

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
           E+A  +F RM ERD+++W  +IA   ++G                  RID A+ +F+ + 
Sbjct: 194 EEARRLFDRMPERDVISWTAMIAGLSKNG------------------RIDEARLLFDRMP 235

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
            R+VV WN ++  YA   R  EA  LF +M       ++ SWN++I G ++NG +  A+ 
Sbjct: 236 ERNVVSWNAMITGYAQNLRLDEALDLFERMP----ERDLPSWNTMITGLIQNGDLRRARK 291

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSAC 513
           +F +M     + N+I+WTT+I+G  Q     EA+  F  ML T G KP+  T    L AC
Sbjct: 292 LFNEMP----KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGAC 347

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD--ISPSKELPV 571
           +++A L  G+ +H  + +      T +V++L++MY+KCG +  A+++FD  ++  ++L  
Sbjct: 348 SNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVS 407

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           +N +I+ YA HG   EA+  FK +++ G  PD +T+  +L+ACSHAGLV EGL+ F  + 
Sbjct: 408 WNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELV 467

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
            D  +    +H+ C+V+L  R G L EA   I  +   P A + G+LL+ C      ++ 
Sbjct: 468 KDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIG 527

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           +  ++ LL++EP+N G Y+ LSN YA++G+W E ++VR  MK+KGL+K PGCSWI++G  
Sbjct: 528 KQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNR 587

Query: 752 LHVFVACDRSHPKTEEIYATL 772
           +HVFV  D+SH +++ IY+ L
Sbjct: 588 VHVFVVGDKSHSQSKLIYSLL 608



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 142/544 (26%), Positives = 241/544 (44%), Gaps = 72/544 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEI--YGELLQGCVYKRDMYTGQQIHARILKN 108
           I++LSK+ +I EA  L  EM+       P++  +  ++ G +       G    AR L +
Sbjct: 59  ITNLSKDGRIMEARRLFDEMR------EPDVITWTTVISGYIK-----CGMIEEARRLFD 107

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
                +N    T +V  Y + + +  A +LF  +  KNV SW  +I    + G  + A+ 
Sbjct: 108 RVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMY 167

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVG--FGRAVHGYVLKVGFDGCVFVASSLIDM 226
            F +M E  V   N V+ ++L  CG +      F R     V+           +++I  
Sbjct: 168 LFEKMPERNVVSWNTVM-SMLAQCGRIEEARRLFDRMPERDVIS---------WTAMIAG 217

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
             K G ++EAR +FD M  RNVV+WN+MI GY QN   +EA+ +F  M    +      +
Sbjct: 218 LSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMI 277

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMV 345
           T ++           G    A  + N M   NV+  +++I    + G  E+A  +FSRM+
Sbjct: 278 TGLIQ---------NGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRML 328

Query: 346 ERDIVTWN------LLIASYVQSG----------------QSDVVVASSIVDMYAKCERI 383
             +    N      +L A    +G                Q    V S++++MY+KC  +
Sbjct: 329 STNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGEL 388

Query: 384 DNAKQVFNSIIL--RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
             A+++F+  +   RD+V WN ++AAYA  G   EA   F +M+  G  P+ +++  ++ 
Sbjct: 389 GTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLS 448

Query: 442 GFLRNGQMNEAKDMFLQM---QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
                G + E    F ++   +S+ V+ +   +  L+    +     EA  F  E LET 
Sbjct: 449 ACSHAGLVEEGLKYFDELVKDRSILVRED--HYACLVDLCGRAGRLKEAFGFI-ERLET- 504

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV--DMYAKCGNIHQ 556
            KPS       L+ C   A+++ G+     L+  +   P    T L+  ++YA  G   +
Sbjct: 505 -KPSARVWGALLAGCNVHANVKIGKQAAKKLLEVE---PENAGTYLLLSNIYASTGKWRE 560

Query: 557 AKRV 560
           A RV
Sbjct: 561 AARV 564



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 128/264 (48%), Gaps = 21/264 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+ LSK  +I EA  L   M  RN               V    M TG   + R+
Sbjct: 210 SWTAMIAGLSKNGRIDEARLLFDRMPERN--------------VVSWNAMITGYAQNLRL 255

Query: 106 LKNGDFFARNEYVE----TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG 161
            +  D F R    +      ++    +   L  A +LF  +  KNV SW  +I    + G
Sbjct: 256 DEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEG 315

Query: 162 LSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
            SE+AL  F  M   +G  P+     +VL AC  L  +G G+ VH  + K  +    FV 
Sbjct: 316 ESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVV 375

Query: 221 SSLIDMYGKCGDLEEARKVF-DGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           S+LI+MY KCG+L  ARK+F DGM + R++V+WN +I  Y  +G  +EAI  F EM   G
Sbjct: 376 SALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSG 435

Query: 279 VEPTRVSVTSILSASANLDALDEG 302
            +P  V+   +LSA ++   ++EG
Sbjct: 436 FKPDDVTYVGLLSACSHAGLVEEG 459


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 200/604 (33%), Positives = 327/604 (54%), Gaps = 44/604 (7%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           FV + L+ +Y + G  + A KVFD +   N   W S+I GYV+N   +EA  +F +M  E
Sbjct: 36  FVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRRE 95

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            +     +++S+L A A L     G+  +   +  G   D ++ +S+++ + +   ++ A
Sbjct: 96  PISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTA 155

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSD-------------VVVASSIVDMYAKCERID 384
              F  M E+DIV+WN++I+ Y  + + D             VV  +S++  Y K   + 
Sbjct: 156 RQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMA 215

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI--------------- 429
            A+ +F+S+ ++D+  WN +++ Y D+G    A  +F +M +                  
Sbjct: 216 EAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGE 275

Query: 430 ------------SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
                       + N+ISW  ++ G+++NG  N A+ +F QM       NL+TW+T+I G
Sbjct: 276 LESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMP----MKNLVTWSTMIGG 331

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
             +N    +A+  F+   E  IKP  T I   +SAC+ +  +    +I    +   L   
Sbjct: 332 YARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSD 391

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             + TSL+DMYAKCG+I +A ++F+++  K+L  Y+ MI+  A HGL  +A+ LF  +Q+
Sbjct: 392 LRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQR 451

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
             I PDS+TF  +L AC+H GLV+EG + F  M  +  ++PS +H+ CVV+LL R G L+
Sbjct: 452 ANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLE 511

Query: 658 EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
           EA  +I  MP  P + + G+LL+ C      +LAE  +  L ++EPDN GNY+ LSN YA
Sbjct: 512 EAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYA 571

Query: 718 ASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGM 777
           A+GRW  V++VR  ++E  +RKN G SWI++   +H FV  D SH  ++ I   L LL  
Sbjct: 572 AAGRWGSVAKVRAKIREHRVRKNRGSSWIELSHVVHEFVMGDMSHTDSDSISLILYLLCE 631

Query: 778 HVRL 781
            ++L
Sbjct: 632 DMKL 635


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/579 (34%), Positives = 324/579 (55%), Gaps = 33/579 (5%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           +F  + ++  Y +   L EA K+FD M  ++VV+WN+M+ GY QNG  +EA  VF +M  
Sbjct: 108 LFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM-- 165

Query: 277 EGVEPTRVSVT--SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
               P R S++   +L+A  +   L E ++       +  EL  +  + ++  Y K  +L
Sbjct: 166 ----PHRNSISWNGLLAAYVHNGRLKEARRLFESQ--SNWEL--ISWNCLMGGYVKRNML 217

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCE 381
            DA  +F RM  RD+++WN +I+ Y Q G               DV   +++V  Y +  
Sbjct: 218 GDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNG 277

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +D A++ F+ + +++ + +N +LA Y    +   A  LF  M       NI SWN++I 
Sbjct: 278 MVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCR----NISSWNTMIT 333

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
           G+ +NG + +A+ +F  M     Q + ++W  +ISG  QN    EA+  F EM   G   
Sbjct: 334 GYGQNGGIAQARKLFDMMP----QRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESS 389

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
           + +T +CALS C D+A+L  G+ +HG +++        +  +L+ MY KCG+  +A  VF
Sbjct: 390 NRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVF 449

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           +    K++  +N MI+GYA HG   +AL LF+++++ G+ PD IT   +L+ACSH+GL++
Sbjct: 450 EGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLID 509

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
            G E F  M  D+ VKP+ +H+ C+++LL R G L+EA  ++  MP DP A   G+LL  
Sbjct: 510 RGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGA 569

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
                 TEL E  +E + ++EP N G YV LSN YAASGRW +V ++R  M+E G++K  
Sbjct: 570 SRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVT 629

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           G SW+++  ++H F   D  HP+ + IYA L  L + +R
Sbjct: 630 GYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMR 668



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 160/326 (49%), Gaps = 26/326 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEI-YGELLQGCV-YKRDMYTGQQIHARILKN 108
           +S   +   + EA     EM  +N     EI Y  +L G V YK+ +  G+   A     
Sbjct: 270 VSGYVQNGMVDEARKYFDEMPVKN-----EISYNAMLAGYVQYKKMVIAGELFEA----- 319

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
                RN      ++  Y +   +  A +LF  +  ++  SWAAII    + G  E+AL 
Sbjct: 320 --MPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALN 377

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            FVEM+ DG S +       L  C  +  +  G+ VHG V+K GF+   FV ++L+ MY 
Sbjct: 378 MFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYF 437

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG  +EA  VF+G+  ++VV+WN+MI GY ++G   +A+ +F  M   GV+P  +++  
Sbjct: 438 KCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVG 497

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELD-NVLGSS-----IINFYSKVGLLEDAEVVFS 342
           +LSA ++   +D G +         M+ D NV  +S     +I+   + G LE+AE +  
Sbjct: 498 VLSACSHSGLIDRGTE-----YFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMR 552

Query: 343 RM-VERDIVTWNLLIASYVQSGQSDV 367
            M  +    +W  L+ +    G +++
Sbjct: 553 NMPFDPGAASWGALLGASRIHGNTEL 578



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 194/412 (47%), Gaps = 43/412 (10%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++  YA+   L  A RLF    +++VF+W A++    + G+ ++A   F EM        
Sbjct: 238 MISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM-----PVK 292

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG--CVFVAS--SLIDMYGKCGDLEEAR 237
           N +  N + A    G+V + + V    L   F+   C  ++S  ++I  YG+ G + +AR
Sbjct: 293 NEISYNAMLA----GYVQYKKMVIAGEL---FEAMPCRNISSWNTMITGYGQNGGIAQAR 345

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
           K+FD M  R+ V+W ++I GY QNG  EEA+ +F EM  +G    R + +  LS  A++ 
Sbjct: 346 KLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIA 405

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
           AL+ GKQ H   V  G E    +G++++  Y K G  ++A  VF  + E+D+V+WN +IA
Sbjct: 406 ALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIA 465

Query: 358 SYVQS--GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
            Y +   G+  +V+  S+     K + I                    +L+A +  G   
Sbjct: 466 GYARHGFGRQALVLFESMKKAGVKPDEITMV----------------GVLSACSHSGLID 509

Query: 416 EASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
             +  FY M  +  + P    +  +I    R G++ EA+++   M+++   P   +W  L
Sbjct: 510 RGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENL---MRNMPFDPGAASWGAL 566

Query: 475 -----ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
                I G T+       ++F  E   +G+    + +  A     DV  +R+
Sbjct: 567 LGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRS 618



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 113/494 (22%), Positives = 208/494 (42%), Gaps = 88/494 (17%)

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           ++V WN  I  +++NG  + A+RVF  M      P R SV+                   
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSM------PRRSSVSY------------------ 80

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
                          +++I+ Y +      A  +F +M ERD+ +WN+++  YV++    
Sbjct: 81  ---------------NAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRN---- 121

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                          R+  A ++F+ +  +DVV WN +L+ YA  G   EA  +F +M  
Sbjct: 122 --------------RRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP- 166

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                N ISWN ++  ++ NG++ EA+ +F    +      LI+W  L+ G  + +   +
Sbjct: 167 ---HRNSISWNGLLAAYVHNGRLKEARRLFESQSNW----ELISWNCLMGGYVKRNMLGD 219

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           A   F  M    +    T I    S    V  L   + +       D+   T +V+    
Sbjct: 220 ARQLFDRMPVRDVISWNTMI----SGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSG--- 272

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
            Y + G + +A++ FD  P K    YNAM++GY  +   V A  LF+ +  + I     +
Sbjct: 273 -YVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNIS----S 327

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           +  ++      G + +  +LF     D   +     +  +++  ++ G+ +EAL + + M
Sbjct: 328 WNTMITGYGQNGGIAQARKLF-----DMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEM 382

Query: 667 PCDPDA---HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV--ALSNAYAASGR 721
             D ++         LSTC      EL + +   +++   +  G +V  AL   Y   G 
Sbjct: 383 KRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFET-GCFVGNALLGMYFKCGS 441

Query: 722 WNEVSQVRDIMKEK 735
            +E + V + ++EK
Sbjct: 442 TDEANDVFEGIEEK 455



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 182/431 (42%), Gaps = 86/431 (19%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSP 180
           ++  Y +   L  A +LF  +  K+V SW A++    + G  ++A   F +M   + +S 
Sbjct: 114 MLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISW 173

Query: 181 DNFVLPNV----LKACGAL-----GW--VGFGRAVHGYVLK--VG-----FDGC----VF 218
           +  +   V    LK    L      W  + +   + GYV +  +G     FD      V 
Sbjct: 174 NGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVI 233

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
             +++I  Y + GDL +A+++F+    R+V  W +M+ GYVQNG+ +EA + F EM ++ 
Sbjct: 234 SWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK- 292

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDA 337
                +S  ++L+           K   A  +   M   N+   +++I  Y + G +  A
Sbjct: 293 ---NEISYNAMLAGYVQYK-----KMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQA 344

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSG---------------------------------- 363
             +F  M +RD V+W  +I+ Y Q+G                                  
Sbjct: 345 RKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADI 404

Query: 364 ------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                             ++   V ++++ MY KC   D A  VF  I  +DVV WNT++
Sbjct: 405 AALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMI 464

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGV 464
           A YA  G   +A  LF  M+  G+ P+ I+   V+     +G ++   + F  M +   V
Sbjct: 465 AGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNV 524

Query: 465 QPNLITWTTLI 475
           +P    +T +I
Sbjct: 525 KPTSKHYTCMI 535



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 17/202 (8%)

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
           P+++TW   IS   +N   + A+  F  M     + S+ +    +S     A     R +
Sbjct: 44  PDIVTWNKAISSHMRNGHCDSALRVFNSM----PRRSSVSYNAMISGYLRNAKFSLARDL 99

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
              +   DL     ++T     Y +   + +A ++FD+ P K++  +NAM+SGYA +G  
Sbjct: 100 FDKMPERDLFSWNVMLTG----YVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFV 155

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            EA  +F  +  +    +SI++  +L A  H G + E   LF     + Q    +  + C
Sbjct: 156 DEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRLF-----ESQSNWELISWNC 206

Query: 646 VVNLLSRCGNLDEALRVILTMP 667
           ++    +   L +A ++   MP
Sbjct: 207 LMGGYVKRNMLGDARQLFDRMP 228


>gi|387965715|gb|AFK13844.1| cyclin domain/pentatricopeptide repeat-containing protein [Beta
           vulgaris subsp. vulgaris]
          Length = 877

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 234/753 (31%), Positives = 396/753 (52%), Gaps = 49/753 (6%)

Query: 62  EAVDLLTEMK-CRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           E + L+ +M  C+  ++ P     +L  C   R +  G+ +H   +K+G  +A    V  
Sbjct: 128 EVMRLVYDMHTCKETELSPVSIAIVLPVCARLRVLNAGRSLHCYAVKSG--WASETLVGN 185

Query: 121 KLVVFYAKCDAL-DVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
            LV  YAKC  + D A   FC +  K+V SW A++      G    A + F  M    V+
Sbjct: 186 SLVSMYAKCGLVYDGAYESFCEINDKDVISWNALMAGFIENGFYNDAWVFFRRMLLGPVA 245

Query: 180 PDNFVLPNVLKACGALGW---VGFGRAVHGYVLK-VGFDGCVFVASSLIDMYGKCGDLEE 235
           P+   L ++L  C  L        G+ +H Y LK       VF+ ++L+  Y + G +E 
Sbjct: 246 PNYATLTSILPVCAMLDGDDAYSLGKELHAYALKHSDLQKDVFIVNALMSFYLRMGVVEG 305

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASA 294
           A  +FDGM +R++V+WN +I GY  N    +A+ +F  + + + +EP  V++ S+L A A
Sbjct: 306 AEALFDGMASRDLVSWNVLIGGYASNNEYSKAVHLFQNLVSSQTLEPGSVTLISVLPACA 365

Query: 295 NLDALDEGKQAHA-VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           +L  L   KQ H  ++    +  D  + +++I+ Y+K   L+ +   F    +RD+++WN
Sbjct: 366 HLQNLWMVKQIHGFISQCPTLYDDTAVSNALISSYAKCNDLDSSFRTFIISSQRDLISWN 425

Query: 354 LLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
            L+ ++ + G                   D +   +++  Y    ++   K+  +  +LR
Sbjct: 426 SLLDAFAERGCELQLLNLLYQMSEERVGPDSITILTLIQFYGSISKLSKIKEA-HGYLLR 484

Query: 397 DVV--------LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR-NG 447
             +        L N LL AYA  G    A+++ Y+++L       + WNS I G++  N 
Sbjct: 485 ACLCQNDTQPTLGNALLDAYAKCGCVNYANKI-YKIKL---GEGKLKWNSEIPGYINWNI 540

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
           Q  E K     ++ +  Q +  T+  +I    +N+C  +A+    ++   G KP   TI 
Sbjct: 541 QAGECK----ALEGIS-QTHRTTFNLMIRAYVENNCLEQAVALLFDLQVQGAKPDAMTIM 595

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLP-TPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
             L  C  +AS    R  HGY++R   C+    +  +++D+Y+KCG +  A ++F  S  
Sbjct: 596 SILPICVKMASAYLLRQCHGYMVRA--CIEDIQLKGTMIDIYSKCGYLSLANKLFWSSTH 653

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           K+L ++ A+I GYAMHG+  EAL LFK++   G+ PD +  T IL+ACSHAGLV+EGL+ 
Sbjct: 654 KDLVMFTALIGGYAMHGMGKEALVLFKHMLVLGLRPDHVVLTAILSACSHAGLVDEGLKF 713

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  +   + +KP+ME +GCVV+LL+R G + +A   +  MP   +++I   LL  C   +
Sbjct: 714 FDSIERVYGMKPTMEQYGCVVDLLARRGKIKDAYTFVTEMPVKVNSNIWSLLLGACRTYH 773

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
           E EL++ +++ LL+ E  + G+YVA+SN +AA  +W+ V ++R +MK + L+K  GCSWI
Sbjct: 774 EVELSQIVADQLLRSEDSDIGSYVAMSNLHAAEEKWDNVLEIRKVMKTRDLKKPAGCSWI 833

Query: 747 QIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           ++ +   +FV+ D SHP+T+ +Y TL  L   V
Sbjct: 834 EVDKRRRIFVSGDSSHPETDAMYNTLMALDKKV 866



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 247/480 (51%), Gaps = 27/480 (5%)

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED--GVSPDNFVLPNVLKACGALGWVG 199
           +++ +   W+ +I      G  ++ L  F+   +   G  PD+ VL   LK+C  +  + 
Sbjct: 1   MQILDFKKWSELINAQSINGKHDEVLNLFLSKLKHPFGFKPDHLVLQTALKSCATISSLN 60

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            GRA+H  V+K+G   C+ V+  L+++Y K  D ++ +K+   M   + V WN ++ G  
Sbjct: 61  VGRALHSLVVKLGHISCLSVSKGLLNVYAKGKDFDDCKKLLYQMPKYDTVVWNIVLSGLS 120

Query: 260 QNGLNE-EAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
            + +++ E +R+ Y+M T +  E + VS+  +L   A L  L+ G+  H  AV +G   +
Sbjct: 121 GSQVHDGEVMRLVYDMHTCKETELSPVSIAIVLPVCARLRVLNAGRSLHCYAVKSGWASE 180

Query: 318 NVLGSSIINFYSKVGLLED-AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
            ++G+S+++ Y+K GL+ D A   F  + ++D+++WN L+A ++++G  +        D 
Sbjct: 181 TLVGNSLVSMYAKCGLVYDGAYESFCEINDKDVISWNALMAGFIENGFYN--------DA 232

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLL---AAYADLGRSGEASRLFYQMQLEGISPNI 433
           +    R+       N   L  ++    +L    AY+ LG+   A    Y ++   +  ++
Sbjct: 233 WVFFRRMLLGPVAPNYATLTSILPVCAMLDGDDAYS-LGKELHA----YALKHSDLQKDV 287

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
              N+++  +LR G +  A+ +F  M S     +L++W  LI G   N+  ++A+  FQ 
Sbjct: 288 FIVNALMSFYLRMGVVEGAEALFDGMAS----RDLVSWNVLIGGYASNNEYSKAVHLFQN 343

Query: 494 MLET-GIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-HDLCLPTPIVTSLVDMYAKC 551
           ++ +  ++P + T+   L AC  + +L   + IHG++ +   L   T +  +L+  YAKC
Sbjct: 344 LVSSQTLEPGSVTLISVLPACAHLQNLWMVKQIHGFISQCPTLYDDTAVSNALISSYAKC 403

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
            ++  + R F IS  ++L  +N+++  +A  G  ++ L L   + ++ + PDSIT   ++
Sbjct: 404 NDLDSSFRTFIISSQRDLISWNSLLDAFAERGCELQLLNLLYQMSEERVGPDSITILTLI 463



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLET--GIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           W+ LI+  + N   +E +  F   L+   G KP    +  AL +C  ++SL  GRA+H  
Sbjct: 9   WSELINAQSINGKHDEVLNLFLSKLKHPFGFKPDHLVLQTALKSCATISSLNVGRALHSL 68

Query: 529 LIR--HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA---MHG 583
           +++  H  CL   +   L+++YAK  +    K++    P  +  V+N ++SG +   +H 
Sbjct: 69  VVKLGHISCL--SVSKGLLNVYAKGKDFDDCKKLLYQMPKYDTVVWNIVLSGLSGSQVHD 126

Query: 584 LAVEALAL-FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
             V  L       ++  + P SI    +L  C+   ++N G  L
Sbjct: 127 GEVMRLVYDMHTCKETELSPVSIAI--VLPVCARLRVLNAGRSL 168


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 223/724 (30%), Positives = 403/724 (55%), Gaps = 24/724 (3%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           Q+  L    ++ EA+ LL  M+     +  +++  L++ C +KR    G ++++  L + 
Sbjct: 65  QLHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSM 124

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
           +  +    +    +  + +   L  A  +F ++  +N+FSW  ++G   + G  ++A+  
Sbjct: 125 NSLSVE--LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICL 182

Query: 170 FVEM-QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
           +  M    GV PD +  P VL+ CG +  +  GR VH +V++ G++  + V ++LI MY 
Sbjct: 183 YHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYV 242

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCGD++ AR +FD M  R++++WN+MI GY +NG+  E +++F+ M    V+P  +++TS
Sbjct: 243 KCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTS 302

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
           ++SA   L     G+  HA  +  G  +D  + +S+   Y   G   +AE +FSRM  +D
Sbjct: 303 VISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKD 362

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           IV+W  +I+ Y  +      +    +D Y    R+ +   V    I    VL  +  A  
Sbjct: 363 IVSWTTMISGYEYN-----FLPEKAIDTY----RMMDQDSVKPDEITVAAVL--SACATL 411

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
            DL    E  +L  + +L  IS  I++ N++I  + +   +++A D+F  +     + N+
Sbjct: 412 GDLDTGVELHKLAIKARL--ISYVIVA-NNLINMYSKCKCIDKALDIFHNIP----RKNV 464

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           I+WT++I+GL  N+   EA++FF++M  T ++P+  T+T AL+AC  + +L  G+ IH +
Sbjct: 465 ISWTSIIAGLRLNNRCFEALIFFRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAH 523

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           ++R  + L   +  +L+DMY +CG ++ A   F+ S  K++  +N +++GY+  G     
Sbjct: 524 VLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFN-SQKKDVSSWNILLTGYSERGQGSVV 582

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           + LF  + +  + PD ITF ++L  C  + +V +GL  F  M  ++ V P+++H+ CVV+
Sbjct: 583 VELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKM-EEYGVTPNLKHYACVVD 641

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL R G L EA + I  MP  PD  + G+LL+ C   +  +L E  ++ + +L+  + G 
Sbjct: 642 LLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGSVGY 701

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           Y+ L N YA  G+W EV++VR +MKE GL  + GCSW+++  ++H F++ D+ HP+T+EI
Sbjct: 702 YILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEI 761

Query: 769 YATL 772
              L
Sbjct: 762 NTVL 765


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 218/770 (28%), Positives = 400/770 (51%), Gaps = 94/770 (12%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           ++IH++I+  G F   + ++   L+  Y+K + ++ A++LF  +  KN+ +W++++ +  
Sbjct: 58  KKIHSKIVVFG-FHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYT 116

Query: 159 RVGLSEKALIGFVE-MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
                 +AL+ FV+ M+     P+ ++L +V++AC   G +     +HG V+K G+   V
Sbjct: 117 HHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDV 176

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           +V +SLID Y K   +++AR +FDG+  +    W ++I GY + G ++ ++++F +M   
Sbjct: 177 YVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEG 236

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            V P +  ++S+LSA   L  L+ GKQ H   + +G+ +D  + +  I+FY K   ++  
Sbjct: 237 HVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLG 296

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSG---------------------------------- 363
             +F RMV++++V+W  +IA  +Q+                                   
Sbjct: 297 RKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSL 356

Query: 364 ------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                              +D  V + ++DMYAKC+ + +A++VFN +   D+V +N ++
Sbjct: 357 VALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMI 416

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISW----------------------------- 436
             Y+   +  EA  LF +M+L   SP ++ +                             
Sbjct: 417 EGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVS 476

Query: 437 ------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
                 +++I  + +  ++ +A+ +F ++Q      +++ WT + SG TQ S   E++  
Sbjct: 477 LDEFAGSALIDVYSKCSRVGDARLVFEEIQ----DKDIVVWTAMFSGYTQQSENEESLKL 532

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           ++ +  + +KP+  T    ++A +++ASLR+G+  H  +I+        +  +LVDMYAK
Sbjct: 533 YKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAK 592

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
            G+I +A + F  +  K+   +N+MI+ YA HG A +AL +F+++  +G+ P+ +TF  +
Sbjct: 593 SGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGV 652

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L+ACSH GL++ G + F  M S   ++P +EH+ C+V+LL R G L EA   I  MP   
Sbjct: 653 LSACSHTGLLDLGFDHFDSM-SQFGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQ 711

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
            A +  SLLS C  S   EL  Y +E  +   P + G+YV LSN +A+ G W  V ++R+
Sbjct: 712 AAVVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRLRE 771

Query: 731 IMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            M   G+ K PGCSWI++  E+H F+A D +H  +  I   L  L + ++
Sbjct: 772 KMDISGVVKEPGCSWIEVNNEIHKFIAKDTAHRDSAPISLVLDNLLLQIK 821



 Score =  238 bits (607), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 158/520 (30%), Positives = 251/520 (48%), Gaps = 67/520 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKN 108
           I+  SK+ + + ++ L  +MK     + P+ Y    +L  C+  + +  G+QIH  +L++
Sbjct: 214 IAGYSKQGRSQVSLKLFDQMK--EGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRS 271

Query: 109 G---DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           G   D    N +++     FY KC  + +  +LF R+  KNV SW  +I    +      
Sbjct: 272 GIVMDVSMVNGFID-----FYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRD 326

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  FVEM   G +PD F   +VL +CG+L  +  GR VH Y +KV  D   FV + LID
Sbjct: 327 ALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLID 386

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY KC  L +ARKVF+ M A ++V++N+MI GY +     EA+ +F EM L    PT + 
Sbjct: 387 MYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLI 446

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
             S+L  SA+L  L+   Q H + +  G+ LD   GS++I+ YSK   + DA +VF  + 
Sbjct: 447 FVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQ 506

Query: 346 ERDIVTWNLLIASYVQSGQS---------------------------------------- 365
           ++DIV W  + + Y Q  ++                                        
Sbjct: 507 DKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQ 566

Query: 366 ------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                       D  VA+++VDMYAK   I+ A + F S   +D   WN+++A YA  G 
Sbjct: 567 FHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGE 626

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
           + +A ++F  M +EG+ PN +++  V+      G ++   D F  M   G++P +  +  
Sbjct: 627 AEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQFGIEPGIEHYVC 686

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           ++S L +     EA  F ++M    IK +       LSAC
Sbjct: 687 MVSLLGRAGKLYEAKEFIEKM---PIKQAAVVWRSLLSAC 723



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 150/359 (41%), Gaps = 83/359 (23%)

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
           C++I +   VF      D+ L NTLL AY+ L     A++LF  M       N+++W+S+
Sbjct: 57  CKKIHSKIVVF-GFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMS----HKNLVTWSSM 111

Query: 440 ILGFLRNGQMNEAKDMFLQ-MQSLGVQPN------------------------------- 467
           +  +  +    EA  +F+Q M+S   +PN                               
Sbjct: 112 VSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGG 171

Query: 468 ----LITWTTLISGLTQNSCGNEAILFF-------------------------------Q 492
               +   T+LI   T+++C ++A L F                                
Sbjct: 172 YVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFD 231

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           +M E  + P    ++  LSAC  +  L  G+ IH Y++R  + +   +V   +D Y KC 
Sbjct: 232 QMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCH 291

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
            +   +++FD    K +  +  +I+G   +    +AL LF  + + G +PD+   T++LN
Sbjct: 292 KVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLN 351

Query: 613 ACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           +C     + +G ++      V + +D  VK  +      +++ ++C +L +A +V   M
Sbjct: 352 SCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGL------IDMYAKCDSLTDARKVFNLM 404


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 214/718 (29%), Positives = 359/718 (50%), Gaps = 99/718 (13%)

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG--CV 217
           VG +    IG  E  +     D   L +VL+ C   G +   +AVHG VLK  F+    +
Sbjct: 99  VGRNRPESIGISETYQQTQVQD---LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLM 155

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            + +    +Y KC +   A  VFD M  RNV +W  MIVG  ++GL  +  + F EM   
Sbjct: 156 VLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNS 215

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G+ P + + ++I+ +   LD+L+ GK  HA  V+ G      + +S++N Y+K+G +ED+
Sbjct: 216 GILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDS 275

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSG---------------------------------- 363
             VF+ M E + V+WN +I+    +G                                  
Sbjct: 276 YWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKL 335

Query: 364 ------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV--LWNT 403
                             + +V+V ++++DMY+KC  + +A+ VF++  +   V   WN 
Sbjct: 336 VDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNA 395

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISW--------------------------- 436
           +++ Y+  G S EA  L+ QM   GI+ ++ ++                           
Sbjct: 396 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCG 455

Query: 437 ---------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
                    N++   + + G + + + +F +M+    + ++++WTTL++  +Q+S G EA
Sbjct: 456 LDLMVVSVNNAIADAYSKCGFLEDVRKVFDRME----ERDIVSWTTLVTAYSQSSLGEEA 511

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
           +  F  M E G  P+  T +  L +C  +  L  GR +HG L +  L     I ++L+DM
Sbjct: 512 LATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDM 571

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           YAKCG+I +A +VFD   + ++  + A+ISGYA HGL  +AL LF+ ++  GI  +++T 
Sbjct: 572 YAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTL 631

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
             +L ACSH G+V EGL  F  M   + V P MEH+ C+++LL R G LD+A+  I  MP
Sbjct: 632 LCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMP 691

Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
            +P+  +  +LL  C      EL E  +  +L + P+    YV LSN Y  +G + +   
Sbjct: 692 MEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLS 751

Query: 728 VRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           +R++MK++G++K PG SWI +   +H F + D+ HP+ +EIY  L  L   ++ +  V
Sbjct: 752 LRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEIYVKLEELREKIKAMGYV 809



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 143/488 (29%), Positives = 232/488 (47%), Gaps = 61/488 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  ++Q C+    +  G+ +HA+I+  G  FA + +V T L+  YAK  +++ +  +F  
Sbjct: 224 YSAIIQSCIGLDSLELGKMVHAQIVMRG--FATHIFVSTSLLNMYAKLGSIEDSYWVFNM 281

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +   N  SW A+I      GL  +A   FV M+    +P+ + L +V KA G L  V  G
Sbjct: 282 MTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMG 341

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV--AWNSMIVGYV 259
           + V     ++G +G V V ++LIDMY KCG L +AR VFD       V   WN+MI GY 
Sbjct: 342 KEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYS 401

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           Q+G ++EA+ ++ +M   G+     +  S+ +A A   +L  G+  H + +  G++L  V
Sbjct: 402 QSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVV 461

Query: 320 -LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
            + ++I + YSK G LED   VF RM ERDIV+W  L+ +Y QS                
Sbjct: 462 SVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREE 521

Query: 364 -------------------------------------QSDVVVASSIVDMYAKCERIDNA 386
                                                 ++  + S+++DMYAKC  I  A
Sbjct: 522 GFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEA 581

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
            +VF+ I   D+V W  +++ YA  G   +A +LF +M+L GI  N ++   V+      
Sbjct: 582 GKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHG 641

Query: 447 GQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
           G + E    F QM+   GV P +  +  +I  L +    ++A+ F ++M    ++P+   
Sbjct: 642 GMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKM---PMEPNEMV 698

Query: 506 ITCALSAC 513
               L  C
Sbjct: 699 WQTLLGGC 706


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  365 bits (938), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 310/572 (54%), Gaps = 59/572 (10%)

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A  VF  +   N + WN+M+ GY  +     A++++  M   G+ P   +   +L + A 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
             A +EG+Q H   +  G E D  + +S+I+ Y++ G LEDA  VF R   RD+V++  L
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
           I  Y  SG                   I +A+++F+ I ++DVV WN +++ YA+ G   
Sbjct: 139 ITGYASSGN------------------IRSAQEMFDEIPVKDVVSWNAMISGYAETGSYK 180

Query: 416 EASRLFYQMQLEGISPN----------------------IISW-------------NSVI 440
           EA  LF +M    + P+                      + SW             N++I
Sbjct: 181 EALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALI 240

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             + + GQ+  A  +F  +       ++++W TLI G T  +   EA+L FQEML +G  
Sbjct: 241 DLYSKCGQVETACGLFEGLSC----KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES 296

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRH--DLCLPTPIVTSLVDMYAKCGNIHQAK 558
           P+  TI   L AC  + ++  GR IH Y+ +   D+     + TSL+DMYAKCG+I  A 
Sbjct: 297 PNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAH 356

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           +VF+    K L  +NAMI G+AMHG A     LF  +++ GI+PD ITF  +L+ACSH+G
Sbjct: 357 QVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSG 416

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
            ++ G  +F  M  D+ + P +EH+GC+++LL   G   EA  +I TMP +PD  I  SL
Sbjct: 417 KLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSL 476

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L  C +    ELAE  + +L+++EP+NPG+YV LSN YA +G W+EV++VR ++  KG++
Sbjct: 477 LKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMK 536

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
           K PGCS I+I  E+H F+  D+ HP+  EIY 
Sbjct: 537 KVPGCSSIEIDSEVHEFIVGDKLHPRNREIYG 568



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 208/425 (48%), Gaps = 53/425 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR--- 141
           LL+ C   +    GQQIH  +LK G  +  + YV T L+  YA+   L+ A ++F R   
Sbjct: 72  LLKSCAKSKAFEEGQQIHGHVLKLG--YEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSH 129

Query: 142 ----------------------------LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
                                       + VK+V SW A+I      G  ++AL  F EM
Sbjct: 130 RDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEM 189

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
            +  V PD   +  VL AC     V  GR VH ++   GF   + + ++LID+Y KCG +
Sbjct: 190 MKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQV 249

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           E A  +F+G+  ++VV+WN++I GY    L +EA+ +F EM   G  P  V++ SIL A 
Sbjct: 250 ETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPAC 309

Query: 294 ANLDALDEGKQAHAVAVINGMELDNV--LGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           A+L A+D G+  H        ++ N   L +S+I+ Y+K G +E A  VF+ M+ + + +
Sbjct: 310 AHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS 369

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
           WN +I  +   G+     A++  D++++  +        N I   D+     LL+A +  
Sbjct: 370 WNAMIFGFAMHGR-----ANAGFDLFSRMRK--------NGIEPDDITFVG-LLSACSHS 415

Query: 412 GRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
           G+      +F  M Q   I+P +  +  +I     +G   EAK+M   ++++ ++P+ + 
Sbjct: 416 GKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEM---IKTMPMEPDGVI 472

Query: 471 WTTLI 475
           W +L+
Sbjct: 473 WCSLL 477



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 136/518 (26%), Positives = 234/518 (45%), Gaps = 92/518 (17%)

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
           D    A  +F  ++  N   W  ++           AL  +V M   G+ P+++  P +L
Sbjct: 14  DGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLL 73

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-------- 241
           K+C        G+ +HG+VLK+G++  ++V +SLI MY + G LE+A KVFD        
Sbjct: 74  KSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVV 133

Query: 242 ------------GMI-----------ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
                       G I            ++VV+WN+MI GY + G  +EA+ +F EM    
Sbjct: 134 SYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTN 193

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V P   ++ ++LSA A   +++ G+Q H+    +G   +  + +++I+ YSK G +E A 
Sbjct: 194 VRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETAC 253

Query: 339 VVFSRMVERDIVTWNLLIASY----------------VQSGQS--DVVVAS--------- 371
            +F  +  +D+V+WN LI  Y                ++SG+S  DV + S         
Sbjct: 254 GLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLG 313

Query: 372 ---------------------------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                                      S++DMYAKC  I+ A QVFNS++ + +  WN +
Sbjct: 314 AIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAM 373

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLG 463
           +  +A  GR+     LF +M+  GI P+ I++  ++     +G+++  + +F  M Q   
Sbjct: 374 IFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYD 433

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA-LSACTDVASLRNG 522
           + P L  +  +I  L  +    EA    +EM++T        I C+ L AC    +L   
Sbjct: 434 ITPKLEHYGCMIDLLGHSGLFKEA----KEMIKTMPMEPDGVIWCSLLKACRRHGNLELA 489

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            +    L++ +   P   V  L ++YA  G   +  +V
Sbjct: 490 ESFARNLMKVEPENPGSYVL-LSNIYATAGEWDEVAKV 526



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 180/379 (47%), Gaps = 18/379 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++    +EA++L  EM   N +        +L  C   R +  G+Q+H+ I
Sbjct: 165 SWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWI 224

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             +G  F  N  +   L+  Y+KC  ++ A  LF  L  K+V SW  +IG    + L ++
Sbjct: 225 DDHG--FGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 282

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD--GCVFVASSL 223
           AL+ F EM   G SP++  + ++L AC  LG +  GR +H Y+ K   D      + +SL
Sbjct: 283 ALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSL 342

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           IDMY KCGD+E A +VF+ M+ +++ +WN+MI G+  +G       +F  M   G+EP  
Sbjct: 343 IDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDD 402

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDA 337
           ++   +LSA ++   LD G+      +   M  D  +   +      I+     GL ++A
Sbjct: 403 ITFVGLLSACSHSGKLDLGRH-----IFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEA 457

Query: 338 EVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           + +   M +E D V W  L+ +  + G  ++ +A S      K E  +    V  S I  
Sbjct: 458 KEMIKTMPMEPDGVIWCSLLKACRRHG--NLELAESFARNLMKVEPENPGSYVLLSNIYA 515

Query: 397 DVVLWNTLLAAYADLGRSG 415
               W+ +    A L   G
Sbjct: 516 TAGEWDEVAKVRALLNGKG 534


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  365 bits (938), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 219/678 (32%), Positives = 346/678 (51%), Gaps = 87/678 (12%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           L +A ++F R+   +  ++ A+I     +G    A+  +  M    V+P+ +  P VLKA
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C AL  +  GR +H +    G    +FV+++LID+Y +C     AR VF  M  R+VVAW
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAW 169

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           N+M+ GY  +G+   AI    +M   G + P   ++ S+L   A   AL +G   HA   
Sbjct: 170 NAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA--- 226

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA 370
                            Y     LE  E                            V++ 
Sbjct: 227 -----------------YCLRACLEQNE--------------------------EQVLIG 243

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG-- 428
           ++++DMYAKC+++  A +VF+ + +R+ V W+ L+  +    R  EA  LF  M +EG  
Sbjct: 244 TALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLC 303

Query: 429 ----------------------------------ISPNIISWNSVILGFLRNGQMNEAKD 454
                                             I  ++ + NS++  + + G +NEA  
Sbjct: 304 FLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATM 363

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
            F ++       + I++  L+SG  QN    EA L F++M    ++P   T+   + AC+
Sbjct: 364 FFDEI----AVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACS 419

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
            +A+L++G+  HG +I   L L T I  SL+DMYAKCG I  +++VFD  P++++  +N 
Sbjct: 420 HLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNT 479

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           MI+GY +HGL  EA  LF  ++ +G  PD +TF  ++ ACSH+GLV EG   F  M   +
Sbjct: 480 MIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKY 539

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            + P MEH+ C+V+LL+R G LDEA + I +MP   D  + G+LL  C      +L + +
Sbjct: 540 GILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQV 599

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           S  + +L P+  GN+V LSN ++A+GR++E ++VR I K KG +K+PG SWI+I   LH 
Sbjct: 600 SRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHA 659

Query: 755 FVACDRSHPKTEEIYATL 772
           FV  D+SHP + +IY  L
Sbjct: 660 FVGGDQSHPCSRDIYHEL 677



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/510 (26%), Positives = 238/510 (46%), Gaps = 64/510 (12%)

Query: 45  KSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGE--LLQGCVYKRDMYTGQQIH 102
           ++Y   I + S       A+DL   M    F++ P  Y    +L+ C    D+  G+ IH
Sbjct: 66  RAYNALIRAYSWLGPFHAAIDLYRSM--LRFRVAPNKYTFPFVLKACSALVDLRAGRTIH 123

Query: 103 ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL 162
           A     G     + +V T L+  Y +C     A  +F ++ +++V +W A++      G+
Sbjct: 124 AHAAAAG--LHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGM 181

Query: 163 SEKALIGFVEMQED-GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC---VF 218
              A+   ++MQ+  G+ P+   L ++L      G +  G ++H Y L+   +     V 
Sbjct: 182 YHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVL 241

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           + ++L+DMY KC  L  A +VF GM  RN V W+++I G+V      EA  +F +M +EG
Sbjct: 242 IGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEG 301

Query: 279 V-EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           +   +  SV S L   A+L  L  G Q HA+   +G+  D    +S+++ Y+K GL+ +A
Sbjct: 302 LCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEA 361

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQS-------------------------------- 365
            + F  +  +D +++  L++  VQ+G++                                
Sbjct: 362 TMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHL 421

Query: 366 --------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                               +  + +S++DMYAKC +ID ++QVF+ +  RDVV WNT++
Sbjct: 422 AALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMI 481

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGV 464
           A Y   G   EA+ LF  M+ +G +P+ +++  +I     +G + E K  F  M    G+
Sbjct: 482 AGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGI 541

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEM 494
            P +  +  ++  L +    +EA  F Q M
Sbjct: 542 LPRMEHYICMVDLLARGGLLDEAYQFIQSM 571



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 150/282 (53%), Gaps = 18/282 (6%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNG---DFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
           L+ C    D++ G Q+HA I K+G   D  A N      L+  YAK   ++ A+  F  +
Sbjct: 314 LRVCASLADLHMGTQLHALIAKSGIHADLTASNS-----LLSMYAKAGLINEATMFFDEI 368

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
            VK+  S+ A++    + G +E+A + F +MQ   + PD   + +++ AC  L  +  G+
Sbjct: 369 AVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGK 428

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
             HG V+  G      + +SLIDMY KCG ++ +R+VFD M AR+VV+WN+MI GY  +G
Sbjct: 429 CSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHG 488

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ-----AHAVAVINGMELD 317
           L +EA  +F  M  +G  P  V+   +++A ++   + EGK       H   ++  ME  
Sbjct: 489 LGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 548

Query: 318 NVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIAS 358
             +    ++  ++ GLL++A + + S  ++ D+  W  L+ +
Sbjct: 549 ICM----VDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGA 586



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 11/121 (9%)

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G +  A++VFD  P+ +   YNA+I  Y+  G    A+ L++++ +  + P+  TF  +L
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 612 NACS-----HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
            ACS      AG          G+ +D  V  ++      ++L  RC     A  V   M
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTAL------IDLYIRCARFGPARNVFAKM 161

Query: 667 P 667
           P
Sbjct: 162 P 162


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  365 bits (938), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 219/702 (31%), Positives = 360/702 (51%), Gaps = 59/702 (8%)

Query: 115 NEYVETKLVVF-YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           +E + T + +  YAK   LDVA +LF ++  + V SW  +I    + G   +AL     M
Sbjct: 30  SEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSM 89

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
               +        +VL  C  L  +  G+ +H  VLK G +    V S+L+  Y  C ++
Sbjct: 90  HRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEI 149

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV-------------- 279
            EAR+VFD ++ RN V W+ M+VGYV   + ++A+ VF +M    V              
Sbjct: 150 GEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNG 209

Query: 280 -------------------EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
                               P   +   ++ A   L  L  G+  H + +  G+E D  +
Sbjct: 210 DGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSI 269

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G +++ FY +   ++DA  V   +V   +   N LI   +  G                 
Sbjct: 270 GGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMG----------------- 312

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
            RI++A+ VFN +   + V +N ++  YA  G+  ++ RLF +M        I S N++I
Sbjct: 313 -RIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCR----TIFSSNTMI 367

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             + RNG++++A ++F + ++   + + +TW ++ISG   +    EA+  +  M    I+
Sbjct: 368 SVYSRNGEIDKALELFEETKN---EKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQ 424

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            + +T +    AC+ + SL  G+ +H +LI+        + TSL+DMY+KCG+I +A+  
Sbjct: 425 QTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTS 484

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F    S  +  + A+I+G+A HGL  EA++LF  + ++G+ P+  TF  +L+ACS AGLV
Sbjct: 485 FVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLV 544

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
           NEG+++F  M   + V P++EH+ CVV+LL R G++ EA   I  MP + D  + G+LLS
Sbjct: 545 NEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLS 604

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C    + E+ E ++E +   +P    +YV LSN YA  GRW E   VR I++   ++K+
Sbjct: 605 ACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKD 664

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
           PGCSWI++  ++HVF   DRSHP    IYATL  L  ++  V
Sbjct: 665 PGCSWIELNNKIHVFSIEDRSHPYCNMIYATLEHLTANINSV 706



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 155/606 (25%), Positives = 260/606 (42%), Gaps = 103/606 (16%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   ISS SK  +  EA+ L+  M   + ++    +  +L  C   R +  G+ IH  +
Sbjct: 65  SWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLV 124

Query: 106 LKNGD------------FFA-----------------RNEYVETKLVVFYAKCDALDVAS 136
           LK+G             F+A                 RNE + + ++V Y  C+ +D A 
Sbjct: 125 LKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDAL 184

Query: 137 RLFCRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGA 194
            +F ++  ++V +W  +I G +       KAL  F  M   G  +P+ F    V++ACG 
Sbjct: 185 SVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGR 244

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           LG +  GR VHG ++K G +    +  +L++ Y +C  +++A +V  G++   + A NS+
Sbjct: 245 LGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSL 304

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           I G +  G  E+A  VF  MT    E   VS   ++   A    +D+ K+     +   M
Sbjct: 305 IEGLISMGRIEDAELVFNGMT----EMNPVSYNLMIKGYAVGGQMDDSKR-----LFEKM 355

Query: 315 ELDNVLGS-SIINFYSKVGLLEDAEVVFSRMV-ERDIVTWNLLIASYVQSGQ-------- 364
               +  S ++I+ YS+ G ++ A  +F     E+D VTWN +I+ Y+ SGQ        
Sbjct: 356 PCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLY 415

Query: 365 --------------------------------------------SDVVVASSIVDMYAKC 380
                                                       S+V V +S++DMY+KC
Sbjct: 416 ITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKC 475

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             I  A+  F SI   +V  W  L+  +A  G   EA  LF +M  +G++PN  ++  V+
Sbjct: 476 GSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVL 535

Query: 441 LGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
               R G +NE   +F  M+    V P L  +  ++  L ++    EA  F ++M    +
Sbjct: 536 SACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKM---PL 592

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV--DMYAKCGNIHQA 557
           +         LSAC     L  G  +   +   D   P PI + ++  ++YA  G   + 
Sbjct: 593 EADGVVWGALLSACWFWMDLEVGERVAEKMFSFD---PKPISSYVILSNIYAGLGRWREK 649

Query: 558 KRVFDI 563
             V  I
Sbjct: 650 MMVRKI 655



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 122/566 (21%), Positives = 222/566 (39%), Gaps = 156/566 (27%)

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
           QS  S+++  +  +  YAK  ++D A+Q+F+ +  R VV WNT++++Y+  GR  EA  L
Sbjct: 26  QSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFL 85

Query: 421 FYQMQLEGISPNIISWNSVI-----LGFLRNGQM-------------------------- 449
            Y M    +  +  +++SV+     L  LR+G++                          
Sbjct: 86  VYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYAS 145

Query: 450 ----NEAKDMFLQMQSLGVQPNLITWT-------------------------------TL 474
                EA+ +F     + V+ N + W+                               TL
Sbjct: 146 CFEIGEARRVF----DVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTL 201

Query: 475 ISGLTQN--SCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           ISG ++N   CG +A+  F+ M+ +G   P+  T  C + AC  +  L  GR +HG L++
Sbjct: 202 ISGFSKNGDGCG-KALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMK 260

Query: 532 HDLCLPTPIVTSLVDMYAKC-------------------------------GNIHQAKRV 560
             L     I  +LV+ Y +C                               G I  A+ V
Sbjct: 261 CGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELV 320

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI-------------------- 600
           F+         YN MI GYA+ G   ++  LF+ +  + I                    
Sbjct: 321 FNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKAL 380

Query: 601 --------DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
                   + D +T+ ++++   H+G   E L+L++ M     ++ +   F  + +  S 
Sbjct: 381 ELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITM-HRLSIQQTQSTFSALFHACSC 439

Query: 653 CGNLDEALRV---ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
            G+L +   +   ++  P + + ++  SL+    K      A+      + +   N   +
Sbjct: 440 LGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQ---TSFVSIFSPNVAAW 496

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ----------IGEELHVFVACD 759
            AL N +A  G  +E   + D M E+GL  N G +++           + E + +F + +
Sbjct: 497 TALINGHAYHGLGSEAISLFDRMIEQGLAPN-GATFVGVLSACSRAGLVNEGMKIFHSME 555

Query: 760 RSH---PKTEEIYATLALLGM--HVR 780
           R +   P  E     + LLG   H+R
Sbjct: 556 RCYSVTPTLEHYACVVDLLGRSGHIR 581



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 21/232 (9%)

Query: 31  TKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCV 90
           TK  +   ++ S+   Y H         Q  EA+ L   M   + Q     +  L   C 
Sbjct: 386 TKNEKDPVTWNSMISGYIHS-------GQPEEALKLYITMHRLSIQQTQSTFSALFHACS 438

Query: 91  YKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSW 150
               ++ GQ +HA ++K    F  N YV T L+  Y+KC ++  A   F  +   NV +W
Sbjct: 439 CLGSLHQGQLLHAHLIKTP--FESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAW 496

Query: 151 AAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK 210
            A+I  +   GL  +A+  F  M E G++P+      VL AC   G V  G  +      
Sbjct: 497 TALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFH---- 552

Query: 211 VGFDGCVFVASSL------IDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
              + C  V  +L      +D+ G+ G + EA +    M +  + V W +++
Sbjct: 553 -SMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALL 603


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 218/670 (32%), Positives = 339/670 (50%), Gaps = 94/670 (14%)

Query: 201 GRAVHGYVLKVGFDG-CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           GRA+H  ++K+     C+++A+SLI+ Y KC  L +A+ VFD +  ++V++WN +I GY 
Sbjct: 26  GRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYS 85

Query: 260 QNGLNEEA--IRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           Q G    +  + +F  M  + + P   + + I +A++NL ++  G+QAHAVA+      D
Sbjct: 86  QQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYD 145

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY------------------ 359
             +GSS++N Y K GLL +A  VF RM ER+ VTW  +I+ Y                  
Sbjct: 146 VFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRR 205

Query: 360 ----------------------VQSGQSDVVVA------------SSIVDMYAKCERIDN 385
                                 V SG+    +A            +++V MYAKC  +D+
Sbjct: 206 EEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDD 265

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----- 440
           + QVF     ++ + W+ ++  YA  G S +A +LF +M   GI+P+  +   V+     
Sbjct: 266 SLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSD 325

Query: 441 ----------------LGF--------------LRNGQMNEAKDMFLQMQSLGVQPNLIT 470
                           LGF               ++G   +A+  F  +Q    QP+L+ 
Sbjct: 326 ACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQ----QPDLVL 381

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           WT++I+G  QN    +A+  +  M   GI P+  T+   L AC+++A+   GR IH   I
Sbjct: 382 WTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTI 441

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           ++ L L   I ++L  MYAKCGN+ +   VF   P +++  +NAMISG + +G   EAL 
Sbjct: 442 KYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALE 501

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF+ ++Q+   PD +TF N+L+ACSH GLV+ G   F  MF +  + P +EH+ C+V++L
Sbjct: 502 LFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVL 561

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
           SR G L EA   I +   D    +   LL  C      EL  Y  E L++L       YV
Sbjct: 562 SRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYV 621

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            LS  Y A GR  +V +VR +MK +G+ K PGCSWI++   +HVFV  D+ HP   EI  
Sbjct: 622 LLSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQMHPCIGEIRT 681

Query: 771 TLALLGMHVR 780
            +  L   ++
Sbjct: 682 EILRLSKQMK 691



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 145/485 (29%), Positives = 251/485 (51%), Gaps = 29/485 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  + ++   EA ++   M+     +    +  +L        + +G+QIH   +K G 
Sbjct: 184 ISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGL 243

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +  +   LV  YAKC +LD + ++F     KN  +W+A+I    + G S KAL  F
Sbjct: 244 LVFLS--ILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLF 301

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M   G++P  F L  VL AC     V  G+ VH Y+LK+GF+  +++ ++L+DMY K 
Sbjct: 302 SRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKS 361

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G  E+ARK F+ +   ++V W SMI GYVQNG NE+A+ ++  M +EG+ P  +++ S+L
Sbjct: 362 GVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVL 421

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A +NL A D+G+Q HA  +  G+ L+  +GS++   Y+K G LE+  +VF RM ERDI+
Sbjct: 422 KACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDII 481

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           +WN +I+   Q+G          ++++ +  + D            D V +  +L+A + 
Sbjct: 482 SWNAMISGLSQNG-----YGKEALELFEEMRQQDTKP---------DDVTFVNVLSACSH 527

Query: 411 LGRSGEASRLFYQMQLE--GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
           +G   ++  L+++M  +  G+ P +  +  ++    R G++ EAK+    ++S  +   L
Sbjct: 528 MGLV-DSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEF---IESTTIDHGL 583

Query: 469 ITWTTLISGLTQNSCGNEAILFFQE-MLETGIKPST-----TTITCALSACTDVASLRNG 522
             W  L+ G  +N    E   +  E ++E G + S+     + I  AL    DV  +R+ 
Sbjct: 584 CLWRILL-GACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTALGRPEDVERVRSM 642

Query: 523 RAIHG 527
             + G
Sbjct: 643 MKVRG 647



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/496 (25%), Positives = 237/496 (47%), Gaps = 29/496 (5%)

Query: 64  VDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV 123
           ++L   M+  N       +  +         ++ GQQ HA  +K   F+  + +V + L+
Sbjct: 96  MELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFY--DVFVGSSLL 153

Query: 124 VFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
             Y K   L  A  +F R+  +N  +WA +I       L+ +A   F  M+ +    + F
Sbjct: 154 NMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEF 213

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
              +VL A     +V  G+ +H   +K G    + + ++L+ MY KCG L+++ +VF+  
Sbjct: 214 AFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMS 273

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
             +N + W++MI GY Q+G + +A+++F  M   G+ P+  ++  +L+A ++  A++EGK
Sbjct: 274 NDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGK 333

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
           Q H   +  G E    + +++++ Y+K G+ EDA   F+ + + D+V W  +IA YVQ+G
Sbjct: 334 QVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNG 393

Query: 364 QSDVVVA-----------------SSIVDMYAKCERIDNAKQVFNSIILR----DVVLWN 402
           +++  ++                 +S++   +     D  +Q+    I      +V + +
Sbjct: 394 ENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGS 453

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
            L   YA  G   E + +F +M       +IISWN++I G  +NG   EA ++F +M+  
Sbjct: 454 ALSTMYAKCGNLEEGNIVFRRMP----ERDIISWNAMISGLSQNGYGKEALELFEEMRQQ 509

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRN 521
             +P+ +T+  ++S  +     +   L+F+ M  E G+ P      C +   +    L  
Sbjct: 510 DTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYE 569

Query: 522 GRA-IHGYLIRHDLCL 536
            +  I    I H LCL
Sbjct: 570 AKEFIESTTIDHGLCL 585



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 20/180 (11%)

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIR---HDLCLPTPIVTSLVDMYAKCGNIH 555
           + P   +   +L   T   SL+ GRA+H  +I+      C+   +  SL++ YAKC ++ 
Sbjct: 3   LHPQNLSSFNSLVQFTHQKSLQKGRALHAQIIKLASSSSCI--YLANSLINFYAKCCHLP 60

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEA--LALFKNLQQKGIDPDSITFTNILNA 613
           +AK VFD   +K++  +N +I+GY+  G    +  + LF+ ++   I P++ TF+ I  A
Sbjct: 61  KAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTA 120

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHF------GCVVNLLSRCGNLDEALRVILTMP 667
            S+         +F G    H V   M  F        ++N+  + G L EA  V   MP
Sbjct: 121 ASNLS------SIFFGQ-QAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMP 173


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 219/702 (31%), Positives = 361/702 (51%), Gaps = 59/702 (8%)

Query: 115 NEYVETKLVVF-YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           +E + T + +  YAK   LDVA +LF ++  + V SW  +I    + G   +AL     M
Sbjct: 70  SEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSM 129

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
               +        +VL  C  L  +  G+ +H  VLK G +    V S+L+  Y  C ++
Sbjct: 130 HRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEI 189

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV-------------- 279
            EAR+VFD ++ RN V W+ M+VGYV   + ++A+ VF +M    V              
Sbjct: 190 GEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNG 249

Query: 280 -------------------EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
                               P   +   ++ A   L  L  G+  H + +  G+E D  +
Sbjct: 250 DGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSI 309

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G +++ FY +   ++DA  V   +V   +   N LI   +  G                 
Sbjct: 310 GGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMG----------------- 352

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
            RI++A+ VFN +   + V +N ++  YA  G+  ++ RLF +M        I S N++I
Sbjct: 353 -RIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCR----TIFSSNTMI 407

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             + RNG++++A ++F + ++   + + +TW ++ISG   +    EA+  +  M    I+
Sbjct: 408 SVYSRNGEIDKALELFEETKN---EKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQ 464

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            + +T +    AC+ + SL+ G+ +H +LI+        + TSL+DMY+KCG+I +A+  
Sbjct: 465 QTRSTFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTS 524

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F    S  +  + A+I+G+A HGL  EA++LF  + ++G+ P+  TF  +L+ACS AGLV
Sbjct: 525 FVSIFSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLV 584

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
           NEG+++F  M   + V P++EH+ CVV+LL R G++ EA   I  MP + D  + G+LLS
Sbjct: 585 NEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLS 644

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C    + E+ E ++E +   +P    +YV LSN YA  GRW E   VR I++   ++K+
Sbjct: 645 ACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKD 704

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
           PGCSWI++  ++HVF   DRSHP    IYATL  L  ++  V
Sbjct: 705 PGCSWIELNNKIHVFSIEDRSHPYCNMIYATLEHLTANINSV 746



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 155/606 (25%), Positives = 259/606 (42%), Gaps = 103/606 (16%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   ISS SK  +  EA+ L+  M   + ++    +  +L  C   R +  G+ IH  +
Sbjct: 105 SWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLV 164

Query: 106 LKNGD------------FFA-----------------RNEYVETKLVVFYAKCDALDVAS 136
           LK+G             F+A                 RNE + + ++V Y  C+ +D A 
Sbjct: 165 LKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDAL 224

Query: 137 RLFCRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGA 194
            +F ++  ++V +W  +I G +       KAL  F  M   G  +P+ F    V++ACG 
Sbjct: 225 SVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGR 284

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           LG +  GR VHG ++K G +    +  +L++ Y +C  +++A +V  G++   + A NS+
Sbjct: 285 LGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSL 344

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           I G +  G  E+A  VF  MT    E   VS   ++   A    +D+ K+     +   M
Sbjct: 345 IEGLISMGRIEDAELVFNGMT----EMNPVSYNLMIKGYAVGGQMDDSKR-----LFEKM 395

Query: 315 ELDNVLGS-SIINFYSKVGLLEDAEVVFSRMV-ERDIVTWNLLIASYVQSGQ-------- 364
               +  S ++I+ YS+ G ++ A  +F     E+D VTWN +I+ Y+ SGQ        
Sbjct: 396 PCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLY 455

Query: 365 --------------------------------------------SDVVVASSIVDMYAKC 380
                                                       S+V V +S++DMY+KC
Sbjct: 456 ITMHRLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKC 515

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             I  A+  F SI   +V  W  L+  +A  G   EA  LF  M  +G++PN  ++  V+
Sbjct: 516 GSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVL 575

Query: 441 LGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
               R G +NE   +F  M+    V P L  +  ++  L ++    EA  F ++M    +
Sbjct: 576 SACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKM---PL 632

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV--DMYAKCGNIHQA 557
           +         LSAC     L  G  +   +   D   P PI + ++  ++YA  G   + 
Sbjct: 633 EADGVVWGALLSACWFWMDLEVGERVAEKMFSFD---PKPISSYVILSNIYAGLGRWREK 689

Query: 558 KRVFDI 563
             V  I
Sbjct: 690 MMVRKI 695



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 123/566 (21%), Positives = 222/566 (39%), Gaps = 156/566 (27%)

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
           QS  S+++  +  +  YAK  ++D A+Q+F+ +  R VV WNT++++Y+  GR  EA  L
Sbjct: 66  QSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFL 125

Query: 421 FYQMQLEGISPNIISWNSVI-----LGFLRNGQM-------------------------- 449
            Y M    +  +  +++SV+     L  LR+G++                          
Sbjct: 126 VYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYAS 185

Query: 450 ----NEAKDMFLQMQSLGVQPNLITW-------------------------------TTL 474
                EA+ +F     + V+ N + W                               TTL
Sbjct: 186 CFEIGEARRVF----DVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTL 241

Query: 475 ISGLTQN--SCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           ISG ++N   CG +A+  F+ M+ +G   P+  T  C + AC  +  L  GR +HG L++
Sbjct: 242 ISGFSKNGDGCG-KALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMK 300

Query: 532 HDLCLPTPIVTSLVDMYAKC-------------------------------GNIHQAKRV 560
             L     I  +LV+ Y +C                               G I  A+ V
Sbjct: 301 CGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELV 360

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI-------------------- 600
           F+         YN MI GYA+ G   ++  LF+ +  + I                    
Sbjct: 361 FNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKAL 420

Query: 601 --------DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
                   + D +T+ ++++   H+G   E L+L++ M     ++ +   F  + +  S 
Sbjct: 421 ELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITM-HRLSIQQTRSTFSALFHACSC 479

Query: 653 CGNLDEALRV---ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
            G+L +   +   ++  P + + ++  SL+    K      A+      + +   N   +
Sbjct: 480 LGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQ---TSFVSIFSPNVAAW 536

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ----------IGEELHVFVACD 759
            AL N +A  G  +E   + D M E+GL  N G +++           + E + +F + +
Sbjct: 537 TALINGHAYHGLGSEAISLFDXMIEQGLAPN-GATFVGVLSACSRAGLVNEGMKIFHSME 595

Query: 760 RSH---PKTEEIYATLALLGM--HVR 780
           R +   P  E     + LLG   H+R
Sbjct: 596 RCYSVTPTLEHYACVVDLLGRSGHIR 621



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 21/232 (9%)

Query: 31  TKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCV 90
           TK  +   ++ S+   Y H         Q  EA+ L   M   + Q     +  L   C 
Sbjct: 426 TKNEKDPVTWNSMISGYIHS-------GQPEEALKLYITMHRLSIQQTRSTFSALFHACS 478

Query: 91  YKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSW 150
               +  GQ +HA ++K    F  N YV T L+  Y+KC ++  A   F  +   NV +W
Sbjct: 479 CLGSLQQGQLLHAHLIKTP--FESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAW 536

Query: 151 AAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK 210
            A+I  +   GL  +A+  F  M E G++P+      VL AC   G V  G  +      
Sbjct: 537 TALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFH---- 592

Query: 211 VGFDGCVFVASSL------IDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
              + C  V  +L      +D+ G+ G + EA +    M +  + V W +++
Sbjct: 593 -SMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALL 643


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 213/672 (31%), Positives = 354/672 (52%), Gaps = 72/672 (10%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+Q+HA  +K+G  F  +E+V TKL+  YA+  + + A  +F  + ++N+ SW A++ + 
Sbjct: 67  GKQLHAHSIKSG--FNAHEFVTTKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVY 124

Query: 158 CRVGLSEKALIGFVEMQEDGVSP--DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
             +G  E+A   F ++  +GV    D FV P VLK C  L  V  GR +HG  LK     
Sbjct: 125 IEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALK----- 179

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
                          GD++ A ++F     ++  ++N+MI GY +NG   +A  +F  M 
Sbjct: 180 -------------HDGDMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRME 226

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            EGV+  R+S  S++S   +    DE        +  G+E D+    S++   + +  + 
Sbjct: 227 QEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCADMASIR 286

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
             +   S  + R +              QS+ +V  ++V+MY+KC+ I  A+  F+ +  
Sbjct: 287 RGKEAHSLAIVRGL--------------QSNSIVGGALVEMYSKCQDIVAAQMAFDGVSE 332

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
           RD                                   + +WN++I G+ R  Q  + +++
Sbjct: 333 RD-----------------------------------LPTWNALISGYARCNQAEKIREL 357

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
             +M+  G +PN+ TW  +I+G  +N   + A+  F EM    ++P   T+   L+AC+ 
Sbjct: 358 HQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSR 417

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +A+++ G+ +H Y IR        I  +LVDMYAKCG++    RV+++  +  L  +NAM
Sbjct: 418 LATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSHNAM 477

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           ++ YAMHG   E +ALF+ +    + PD +TF  +L++C HAG +  G E    M + + 
Sbjct: 478 LTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMVA-YN 536

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           V PS++H+ C+V+LLSR G L EA  +I  +P + DA    +LL  C   NE +L E  +
Sbjct: 537 VMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNEVDLGEIAA 596

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           E L++LEP+NPGNYV L+N YA++G+W+ ++Q R +MK+ G++K PGCSWI+  + +HVF
Sbjct: 597 EKLIELEPNNPGNYVMLANLYASAGKWHYLTQTRQLMKDMGMQKRPGCSWIEDRDGIHVF 656

Query: 756 VACDRSHPKTEE 767
           VA D  H  T +
Sbjct: 657 VAKDIYHTSTSK 668



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 8/248 (3%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKN 108
           I+   + KQ   A+ L TEM+  N +  P+IY  G +L  C     +  G+Q+HA  ++ 
Sbjct: 377 IAGYVENKQYDSAMQLFTEMQIANLR--PDIYTVGIILAACSRLATIQRGKQVHAYSIRA 434

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G     + ++   LV  YAKC  +    R++  +   N+ S  A++      G  E+ + 
Sbjct: 435 GH--DSDVHIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIA 492

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F  M    V PD+     VL +C   G +  G      ++       +   + ++D+  
Sbjct: 493 LFRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMVAYNVMPSLKHYTCMVDLLS 552

Query: 229 KCGDLEEARKVFDGMIAR-NVVAWNSMIVG-YVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           + G L EA ++   +    + V WN+++ G ++ N ++   I     + LE   P    +
Sbjct: 553 RAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNEVDLGEIAAEKLIELEPNNPGNYVM 612

Query: 287 TSILSASA 294
            + L ASA
Sbjct: 613 LANLYASA 620


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  365 bits (937), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 215/628 (34%), Positives = 327/628 (52%), Gaps = 67/628 (10%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS---------- 253
           VH  ++K  F    F+ + LID+YGKCG ++ ARK+FD M+ RN+ +WNS          
Sbjct: 41  VHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGF 100

Query: 254 ---------------------MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
                                MI G+ Q+G  +EA+  F +M   G      S  S LSA
Sbjct: 101 LDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSA 160

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A L  L  G Q H++   +    D  +GS++++ YSK G +E A+ VF  M  R  V+W
Sbjct: 161 CAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSW 220

Query: 353 NLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSII- 394
           N LI  Y Q+G                 + D V  +S+V   A    I   +Q+   ++ 
Sbjct: 221 NSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVK 280

Query: 395 ----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
                 D++L N LL  YA   R  EA  +F  M +     +++S  S++ G+ +  ++ 
Sbjct: 281 CDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIR----SVVSETSMVSGYAKASKVK 336

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
            A+ MF  M    +  ++ITW  LI+G TQN    EA++ F+ +    + P+  T    L
Sbjct: 337 VARYMFSNM----MVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLL 392

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTP------IVTSLVDMYAKCGNIHQAKRVFDIS 564
           +AC ++A L+ GR  H ++++H             +  SL+DMY KCG++    RVF   
Sbjct: 393 NACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHM 452

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
             K+   +NAMI GYA +G   +AL +F  + + G  PD +T   +L ACSHAGL++EG 
Sbjct: 453 LEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGR 512

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
             F  M + H + P  +H+ C+V+LL R G L+EA  +I  M   PDA + GSLL+ C  
Sbjct: 513 YYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKV 572

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
               +L EY+ + LL+++P+N G YV LSN YA +  W  V +VR +M+++G+ K PGCS
Sbjct: 573 HRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCS 632

Query: 745 WIQIGEELHVFVACDRSHPKTEEIYATL 772
           WI+I  EL+VF+  D+ H + +EIY  L
Sbjct: 633 WIEIQGELNVFMVKDKRHARKKEIYMVL 660



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 153/576 (26%), Positives = 270/576 (46%), Gaps = 99/576 (17%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           + +LL  C   R      ++HA I+K+   FA   +++ +L+  Y KC  +DVA +LF R
Sbjct: 22  FSKLLNQCARSRSARDTSRVHACIIKSP--FASETFIQNRLIDVYGKCGCVDVARKLFDR 79

Query: 142 LRVKNVFSWAAIIGLNCRVGL-------------------------------SEKALIGF 170
           +  +N+FSW +II    + G                                 ++AL+ F
Sbjct: 80  MLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYF 139

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M   G   + +   + L AC  L  +  G  +H  V +  +   V++ S+L+DMY KC
Sbjct: 140 AQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKC 199

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E A+ VFD M  R+ V+WNS+I  Y QNG  +EA+++F EM   GVEP  V++ S++
Sbjct: 200 GRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVV 259

Query: 291 SASANLDALDEGKQAHA-VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           SA A + A+ EG+Q HA V   +    D +LG+++++ Y+K   + +A ++F  M  R +
Sbjct: 260 SACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSV 319

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
           V+                   +S+V  YAK  ++  A+ +F++++++DV+ WN L+A   
Sbjct: 320 VS------------------ETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCT 361

Query: 410 DLGRSGEASRLFYQMQLEGISP-------------------------------------- 431
             G + EA  LF  ++ E + P                                      
Sbjct: 362 QNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYG 421

Query: 432 ---NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
              ++   NS+I  +++ G +     +F  M    ++ + ++W  +I G  QN  GN+A+
Sbjct: 422 EDSDVFVGNSLIDMYMKCGSVENGCRVFQHM----LEKDCVSWNAMIVGYAQNGFGNKAL 477

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGR-AIHGYLIRHDLCLPTPIVTSLVDM 547
             F +MLE+G  P   T+   L AC+    L  GR        +H L       T +VD+
Sbjct: 478 EVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDL 537

Query: 548 YAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMH 582
             + G + +AK +  ++S   +  V+ ++++   +H
Sbjct: 538 LGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVH 573



 Score =  185 bits (470), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 225/471 (47%), Gaps = 58/471 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS   +  +  EA+    +M    F +    +G  L  C   +D+  G QIH+ +
Sbjct: 118 SWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLV 177

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            ++   +  + Y+ + LV  Y+KC  ++ A  +F  + V++  SW ++I    + G  ++
Sbjct: 178 YRSN--YLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDE 235

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVFVASSLI 224
           AL  FVEM + GV PD   L +V+ AC  +  +  G+ +H  V+K   F   + + ++L+
Sbjct: 236 ALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALL 295

Query: 225 DMYGKCGDLEEARKVFD-------------------------------GMIARNVVAWNS 253
           DMY KC  + EAR +FD                                M+ ++V+ WN+
Sbjct: 296 DMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNA 355

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           +I G  QNG NEEA+ +F  +  E V PT  +  ++L+A ANL  L  G+QAH+  + +G
Sbjct: 356 LIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHG 415

Query: 314 MEL------DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
                    D  +G+S+I+ Y K G +E+   VF  M+E+D V+WN +I  Y Q+G    
Sbjct: 416 FRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNG---- 471

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
              +  ++++ K         +  S    D V    +L A +  G   E    F  M  +
Sbjct: 472 -FGNKALEVFCK---------MLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQ 521

Query: 428 -GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            G+ P    +  ++    R G + EAK++   ++ + +QP+ I W +L++ 
Sbjct: 522 HGLMPLKDHYTCMVDLLGRAGYLEEAKNL---IEEMSMQPDAIVWGSLLAA 569



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 115/293 (39%), Gaps = 74/293 (25%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD------- 562
           L+ C    S R+   +H  +I+      T I   L+D+Y KCG +  A+++FD       
Sbjct: 26  LNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNI 85

Query: 563 ------------------------ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
                                     P  +   +N+MISG+  HG   EAL  F  +   
Sbjct: 86  FSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGH 145

Query: 599 GIDPDSITFTNILNACSHAGLVNEGL---------------ELFVG-----MFS------ 632
           G   +  +F + L+AC  AGL +  L               ++++G     M+S      
Sbjct: 146 GFLVNEYSFGSALSAC--AGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVE 203

Query: 633 ------DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PC--DPDAHIIGSLLSTCV 683
                 D     S   +  ++    + G +DEAL++ + M  C  +PD   + S++S C 
Sbjct: 204 YAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACA 263

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNA----YAASGRWNEVSQVRDIM 732
             +  +  + I  H   ++ D   N + L NA    YA   R NE   + D+M
Sbjct: 264 TISAIKEGQQI--HARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMM 314


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 225/723 (31%), Positives = 351/723 (48%), Gaps = 80/723 (11%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           LQGC+ + D   G+ +H  +++ G     + +    L+  Y K   L  A RLF R+  +
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           N+ S+  ++  + + G  E A   F  ++ +G   + FVL  +LK   A+   G    VH
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
               K+G D   FV S LID Y  C  + +A  VF+G++ ++ V W +M+  Y +N   E
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
            A RVF +M + G +P   ++TS+L A+  L ++  GK  H  A+               
Sbjct: 246 NAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAI--------------- 290

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDN 385
                   L D E                              V  +++DMYAKC  I +
Sbjct: 291 ------KTLNDTEPH----------------------------VGGALLDMYAKCGDIKD 316

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A+  F  I   DV+L + +++ YA   ++ +A  LF ++    + PN  S +SV+     
Sbjct: 317 ARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTN 376

Query: 446 NGQMNEAK-------------DMF------------------LQMQSLGVQPNLITWTTL 474
             Q++  K             D+F                  L++ S     N ++W T+
Sbjct: 377 MVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTI 436

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           + G +Q+  G EA+  F EM    +  +  T +  L AC   AS+R+   IH  + +   
Sbjct: 437 VVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTF 496

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
              T I  SL+D YAKCG I  A +VF     +++  +NA+ISGYA+HG A +AL LF  
Sbjct: 497 NNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDR 556

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           + +  ++ + ITF  +L+ CS  GLVN GL LF  M  DH +KPSMEH+ C+V LL R G
Sbjct: 557 MNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAG 616

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L++AL+ I  +P  P A +  +LLS+C+      L  + +E +L++EP +   YV LSN
Sbjct: 617 RLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSN 676

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            YAA+G  ++V+ +R  M+  G+RK PG SW++I  E+H F      HP    I A L  
Sbjct: 677 MYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEW 736

Query: 775 LGM 777
           L +
Sbjct: 737 LNL 739



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 244/493 (49%), Gaps = 39/493 (7%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC--VFVASSLIDMYGKCGDLEEARK 238
           D+F     L+ C A G    GRAVHG+V++ G  G   +F A+ L++MYGK G L  AR+
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +FD M  RN+V++ +++  + Q G  E A  +F  +  EG E  +  +T++L  +  +DA
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA 177

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
                  H+ A   G + +  +GS +I+ YS   L+ DAE VF+ +V +D V W  +++ 
Sbjct: 178 AGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQ---VFNSIILRDVVLWNTLLAAYADLGRSG 415
           Y ++         +   +++K  R+   K       S++   V L + +L      G  G
Sbjct: 238 YSEND-----CPENAFRVFSKM-RVSGCKPNPFALTSVLKAAVCLPSVVLGK----GIHG 287

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            A +      L    P++    +++  + + G + +A+  F  +       ++I  + +I
Sbjct: 288 CAIK-----TLNDTEPHV--GGALLDMYAKCGDIKDARLAFEMIP----YDDVILLSFMI 336

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           S   Q++   +A   F  ++ + + P+  +++  L ACT++  L  G+ IH + I+    
Sbjct: 337 SRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHE 396

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
               +  +L+D YAKC ++  + ++F          +N ++ G++  GL  EAL++F  +
Sbjct: 397 SDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEM 456

Query: 596 QQKGIDPDSITFTNILNACS------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
           Q   +    +T++++L AC+      HAG ++  +E     F++  V  +      +++ 
Sbjct: 457 QAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIE--KSTFNNDTVIGN-----SLIDT 509

Query: 650 LSRCGNLDEALRV 662
            ++CG + +AL+V
Sbjct: 510 YAKCGYIRDALKV 522



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 144/295 (48%), Gaps = 17/295 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILKN 108
           IS  ++  Q  +A +L   ++     + P  Y    +LQ C     +  G+QIH   +K 
Sbjct: 336 ISRYAQSNQNEQAFELF--LRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKI 393

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G     + +V   L+ FYAKC+ +D + ++F  LR  N  SW  I+    + GL E+AL 
Sbjct: 394 G--HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALS 451

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F EMQ   +        +VL+AC +   +     +H  + K  F+    + +SLID Y 
Sbjct: 452 VFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYA 511

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG + +A KVF  ++ R++++WN++I GY  +G   +A+ +F  M    VE   ++  +
Sbjct: 512 KCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVA 571

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDA 337
           +LS  ++      G   H +++ + M +D+ +  S      I+    + G L DA
Sbjct: 572 LLSVCSS-----TGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDA 621



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 24/249 (9%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA+ +  EM+          Y  +L+ C     +    QIH  I K+   F  +  +   
Sbjct: 448 EALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKST--FNNDTVIGNS 505

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  YAKC  +  A ++F  L  +++ SW AII      G +  AL  F  M +  V  +
Sbjct: 506 LIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESN 565

Query: 182 NFVLPNVLKACGALGWVGFG-------RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLE 234
           +     +L  C + G V  G       R  HG    +    C+      + + G+ G L 
Sbjct: 566 DITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCI------VRLLGRAGRLN 619

Query: 235 EARKVFDGMI--ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP----TRVSVTS 288
           +A + F G I  A + + W +++   + +  N    R   E  LE +EP    T V +++
Sbjct: 620 DALQ-FIGDIPSAPSAMVWRALLSSCIIHK-NVALGRFSAEKILE-IEPQDETTYVLLSN 676

Query: 289 ILSASANLD 297
           + +A+ +LD
Sbjct: 677 MYAAAGSLD 685


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 213/713 (29%), Positives = 357/713 (50%), Gaps = 99/713 (13%)

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG--CV 217
           VG +    IG  E  +     D   L +VL+ C   G +   +AVHG VLK  F+    +
Sbjct: 45  VGRNRPESIGISETYQQTQVQD---LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLM 101

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            + +    +Y KC +   A  VFD M  RNV +W  MIVG  ++GL  +  + F EM   
Sbjct: 102 VLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNS 161

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G+ P + + ++I+ +   LD+L+ GK  HA  V+ G      + +S++N Y+K+G +ED+
Sbjct: 162 GILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDS 221

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSG---------------------------------- 363
             VF+ M E + V+WN +I+    +G                                  
Sbjct: 222 YWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKL 281

Query: 364 ------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV--LWNT 403
                             + +V+V ++++DMY+KC  + +A+ VF++  +   V   WN 
Sbjct: 282 VDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNA 341

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISW--------------------------- 436
           +++ Y+  G S EA  L+ QM   GI+ ++ ++                           
Sbjct: 342 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCG 401

Query: 437 ---------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
                    N++   + + G + + + +F +M+    + ++++WTTL++  +Q+S G EA
Sbjct: 402 LDLMVVSVNNAIADAYSKCGFLEDVRKVFDRME----ERDIVSWTTLVTAYSQSSLGEEA 457

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
           +  F  M E G  P+  T +  L +C  +  L  GR +HG L +  L     I ++L+DM
Sbjct: 458 LATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDM 517

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           YAKCG+I +A +VFD   + ++  + A+ISGYA HGL  +AL LF+ ++  GI  +++T 
Sbjct: 518 YAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTL 577

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
             +L ACSH G+V EGL  F  M   + V P MEH+ C+++LL R G LD+A+  I  MP
Sbjct: 578 LCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMP 637

Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
            +P+  +  +LL  C      EL E  +  +L + P+    YV LSN Y  +G + +   
Sbjct: 638 MEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLS 697

Query: 728 VRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           +R++MK++G++K PG SWI +   +H F + D+ HP+ +EIY  L  L   ++
Sbjct: 698 LRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEIYVKLEELREKIK 750



 Score =  207 bits (526), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/469 (29%), Positives = 226/469 (48%), Gaps = 58/469 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  ++Q C+    +  G+ +HA+I+  G  FA + +V T L+  YAK  +++ +  +F  
Sbjct: 170 YSAIIQSCIGLDSLELGKMVHAQIVMRG--FATHIFVSTSLLNMYAKLGSIEDSYWVFNM 227

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +   N  SW A+I      GL  +A   FV M+    +P+ + L +V KA G L  V  G
Sbjct: 228 MTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMG 287

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV--AWNSMIVGYV 259
           + V     ++G +G V V ++LIDMY KCG L +AR VFD       V   WN+MI GY 
Sbjct: 288 KEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYS 347

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           Q+G ++EA+ ++ +M   G+     +  S+ +A A   +L  G+  H + +  G++L  V
Sbjct: 348 QSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVV 407

Query: 320 -LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
            + ++I + YSK G LED   VF RM ERDIV+W  L+ +Y QS                
Sbjct: 408 SVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREE 467

Query: 364 -------------------------------------QSDVVVASSIVDMYAKCERIDNA 386
                                                 ++  + S+++DMYAKC  I  A
Sbjct: 468 GFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEA 527

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
            +VF+ I   D+V W  +++ YA  G   +A +LF +M+L GI  N ++   V+      
Sbjct: 528 GKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHG 587

Query: 447 GQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           G + E    F QM+   GV P +  +  +I  L +    ++A+ F ++M
Sbjct: 588 GMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKM 636


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  365 bits (936), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 211/595 (35%), Positives = 333/595 (55%), Gaps = 34/595 (5%)

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG--KCGDLEEAR 237
           P N   P  L+ CG          +H   +K        V+S L+ +Y   +  +L+ A 
Sbjct: 15  PPNLHFP--LQNCGT---EREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAH 69

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
            +FD +    +V+WN +I  Y++N  + +AI +F ++  + V P   ++  +L   A L 
Sbjct: 70  SLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGCARLG 128

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
           AL EGKQ H + +  G  +D  + SS+++ YSK G +E    VF RM ++D+V+WN    
Sbjct: 129 ALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWN---- 184

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                         S++D YA+C  I+ A ++F  +  +D   W  L+   +  G+   A
Sbjct: 185 --------------SLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAA 230

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
             +F +M +     N +SWN++I G+++ G  N AK++F QM     + +L+TW ++I+G
Sbjct: 231 RDVFDRMPIR----NSVSWNAMINGYMKAGDSNTAKELFDQMP----ERSLVTWNSMITG 282

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
             +N    +A+  F+ ML   I P+ TTI  A+SA + + SL  GR +H Y+++      
Sbjct: 283 YERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTD 342

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             + T L++MY+KCG++  A RVF   P K+L  + ++I G  MHGL  + L LF  + +
Sbjct: 343 GVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCR 402

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
            G+ P +ITF  +LNACSHAG   +    F  M  D+ +KPS+EH+GC++++L R G+L+
Sbjct: 403 TGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLE 462

Query: 658 EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
           EA   I  MP   +  I  SLLS   K     + EY ++HL+ L PD  G YV LSN YA
Sbjct: 463 EAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYA 522

Query: 718 ASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           A+G W +V QVR++MK+KG++K+PGCS I+    +H F+  D+SHP+TEEIY  L
Sbjct: 523 AAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKL 577



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 156/529 (29%), Positives = 248/529 (46%), Gaps = 54/529 (10%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYA--KCDALDVASRLFCRLR 143
           LQ C  +R+     Q+HA  +K       +  V ++L+  YA  + + L  A  LF  ++
Sbjct: 22  LQNCGTERE---ANQLHALSIKTASL--NHPSVSSRLLALYADPRINNLQYAHSLFDWIQ 76

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
              + SW  +I        S  A+  F ++  D V PD+F LP VLK C  LG +  G+ 
Sbjct: 77  EPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGCARLGALQEGKQ 135

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +HG VLK+GF    FV SSL+ MY KCG++E  RKVFD M  ++VV+WNS+I GY + G 
Sbjct: 136 IHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGE 195

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE-GKQAHAVAVINGMELDN-VLG 321
            E A+ +F EM      P + S     S +  +D L + GK   A  V + M + N V  
Sbjct: 196 IELALEMFEEM------PEKDS----FSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSW 245

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------SDVVVASSIV 374
           +++IN Y K G    A+ +F +M ER +VTWN +I  Y ++ Q        +V++   I 
Sbjct: 246 NAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDIS 305

Query: 375 DMYAKC----------ERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRL 420
             Y               +   + V + I+      D VL   L+  Y+  G    A R+
Sbjct: 306 PNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRV 365

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
           F  +  + +      W SVI+G   +G + +  ++F +M   G++P+ IT+  +++  + 
Sbjct: 366 FRSIPKKKLG----HWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSH 421

Query: 481 NSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
                +A  +F+ M  + GIKPS     C +        L   +     + R  +     
Sbjct: 422 AGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDT---IERMPIKANKV 478

Query: 540 IVTSLVDMYAKCGNI----HQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           I TSL+    K GNI    + A+ + D++P      Y  + + YA  GL
Sbjct: 479 IWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTT-GCYVILSNMYAAAGL 526



 Score =  155 bits (393), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 123/440 (27%), Positives = 206/440 (46%), Gaps = 38/440 (8%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L+GC     +  G+QIH  +LK G  F  +++V + LV  Y+KC  +++  ++F R+  
Sbjct: 120 VLKGCARLGALQEGKQIHGLVLKIG--FGVDKFVLSSLVSMYSKCGEIELCRKVFDRMED 177

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           K+V SW ++I    R G  E AL  F EM E     D+F    ++      G +   R V
Sbjct: 178 KDVVSWNSLIDGYARCGEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAARDV 233

Query: 205 HGYVLKVGFDGCVFVAS----SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
                   FD      S    ++I+ Y K GD   A+++FD M  R++V WNSMI GY +
Sbjct: 234 --------FDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYER 285

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           N    +A+++F  M  E + P   ++   +SA++ + +L  G+  H+  V +G + D VL
Sbjct: 286 NKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVL 345

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G+ +I  YSK G ++ A  VF  + ++ +  W  +I      G     +    ++++ + 
Sbjct: 346 GTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHG-----LVEQTLELFDEM 400

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSV 439
            R          I          +L A +  G + +A R F  M  + GI P+I  +  +
Sbjct: 401 CRTGLKPHAITFI---------GVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCL 451

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           I    R G + EAKD   +M    ++ N + WT+L+SG  ++  GN  +  +       +
Sbjct: 452 IDVLCRAGHLEEAKDTIERMP---IKANKVIWTSLLSGSRKH--GNIRMGEYAAQHLIDL 506

Query: 500 KPSTTTITCALSACTDVASL 519
            P TT     LS     A L
Sbjct: 507 APDTTGCYVILSNMYAAAGL 526


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  365 bits (936), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 221/702 (31%), Positives = 360/702 (51%), Gaps = 57/702 (8%)

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV-GLSEKALIGFVEM 173
           N+Y     +    +   LD A  L   +  +N  SW  +I    R  G   +A+  +  M
Sbjct: 73  NDYSYNAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRM 132

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           + +G+ P +F L +VL ACG L  +G GR  HG  +KVG D   FV ++L+ MY KCG +
Sbjct: 133 RAEGLLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSV 192

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
            +A ++F GM   N V++ +M+ G  Q G  ++A+R+F  M   GV    VSV+S+L A 
Sbjct: 193 GDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGAC 252

Query: 294 ANLDALDE--------GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           A   A D         G+  HA+ V  G   D  +G+S+I+ Y+K   +++A  VF  + 
Sbjct: 253 AQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLP 312

Query: 346 ERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQ 388
              IV+WN+LI  + Q G                 + + V  S+++    K   + +A+ 
Sbjct: 313 SVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARA 372

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGF 443
           +F+ I    V  WNTLL+ Y    +  +   LF +MQ + + P+  +   ++     LG 
Sbjct: 373 MFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGI 432

Query: 444 LRNG-QMNEAK----------------DMFLQMQSLGV---------QPNLITWTTLISG 477
           L  G Q++ A                 DM+ +   +G+         + +++ W ++ISG
Sbjct: 433 LDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISG 492

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
           LT +S   EA  FF++M E GI P+ ++    +++C+ ++S+ +GR IH  +++      
Sbjct: 493 LTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQN 552

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             + ++L+DMYAKCGN+  A+  FD    K +  +N MI GYA +GL  +A+ LF+ +  
Sbjct: 553 VYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLT 612

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
               PD++TF  +L  CSH+GLV++ +  F  M + + + P  EH+ C+++ L R G   
Sbjct: 613 TEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFV 672

Query: 658 EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
           E   +I  MPC  D  I   LL+ CV  +  EL +  +EHL +++P NP  YV LSN YA
Sbjct: 673 EVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYA 732

Query: 718 ASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           + GR  + S VR +M  +G+ K  G SWI   + +  F+  D
Sbjct: 733 SLGRHGDASAVRALMSNRGVVKGRGYSWIDQKDGVRAFMVAD 774



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/542 (25%), Positives = 246/542 (45%), Gaps = 97/542 (17%)

Query: 217 VFVASSLIDMYG-------------------------------KCGDLEEARKVFDGMIA 245
            F+A+ L+++Y                                + GDL+ AR +  GM  
Sbjct: 43  TFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPR 102

Query: 246 RNVVAWNSMIVGYVQN-GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
           RN V+WN++I    ++ G   EA+ ++  M  EG+ PT  ++ S+LSA   L AL +G++
Sbjct: 103 RNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRR 162

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            H VAV  G++ +  + ++++  Y+K G + DA  +F  M   + V++  ++    Q+G 
Sbjct: 163 CHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGS 222

Query: 365 -----------------SDVVVASSIVDMYAKCERIDNA-------KQVFNSIILR---- 396
                             D V  SS++   A+    D +        Q  +++++R    
Sbjct: 223 IDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFG 282

Query: 397 -DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
            D  + N+L+  Y       EA ++F  +     S  I+SWN +I GF + G   +A ++
Sbjct: 283 SDQHVGNSLIDMYTKCVEMDEAVKVFESLP----SVTIVSWNILITGFGQEGSCAKAVEV 338

Query: 456 FLQMQSLGVQPN-------------------------------LITWTTLISGLTQNSCG 484
              MQ  G +PN                               + TW TL+SG  Q    
Sbjct: 339 LSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQH 398

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
            + I  F+ M    ++P  TT+   LS+C+ +  L  GR +H   +R  L     + + L
Sbjct: 399 QDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGL 458

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           VDMY+KCG I  A+ +F+    +++  +N++ISG  +H L  EA   FK +++ GI P  
Sbjct: 459 VDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTE 518

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
            ++ +++N+CS    +  G ++   +  D     ++     ++++ ++CGN+D+A     
Sbjct: 519 SSYASMINSCSRLSSIPHGRQIHAQVMKD-GYDQNVYVGSALIDMYAKCGNMDDARLFFD 577

Query: 665 TM 666
           TM
Sbjct: 578 TM 579



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 142/576 (24%), Positives = 241/576 (41%), Gaps = 102/576 (17%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGP----EIYGELLQGCV----YKRDMYT 97
           S+   +  L++   I +A+ L   M      + P     + G   Q C       R    
Sbjct: 209 SFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRL 268

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           GQ IHA +++ G  F  +++V   L+  Y KC  +D A ++F  L    + SW  +I   
Sbjct: 269 GQAIHALVVRKG--FGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGF 326

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            + G   KA+     MQE G  P+     N+L +C                         
Sbjct: 327 GQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASC------------------------- 361

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
                      K  D+  AR +FD +   +V  WN+++ GY Q   +++ I +F  M  +
Sbjct: 362 ----------IKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQ 411

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            V+P R ++  ILS+ + L  LD G+Q H+ +V   +  D  + S +++ YSK G +  A
Sbjct: 412 NVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIA 471

Query: 338 EVVFSRMVERDIVTWNLLIA---------------------------------------- 357
             +F++M ERD+V WN +I+                                        
Sbjct: 472 RSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRL 531

Query: 358 SYVQSGQ------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           S +  G+             +V V S+++DMYAKC  +D+A+  F++++++++V WN ++
Sbjct: 532 SSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMI 591

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGV 464
             YA  G   +A  LF  M      P+ +++ +V+ G   +G +++A   F  M+ S G+
Sbjct: 592 HGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGI 651

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
            P    +T LI  L +     E      +M     K         L+AC    +   G+ 
Sbjct: 652 IPLAEHYTCLIDALGRAGRFVEVEALIHKM---PCKDDPIIWEVLLAACVVHHNAELGKC 708

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
              +L R D   P+P V  L ++YA  G    A  V
Sbjct: 709 AAEHLFRIDPKNPSPYVL-LSNIYASLGRHGDASAV 743



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 198/391 (50%), Gaps = 39/391 (9%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHA---RILK 107
           +S   +E+Q ++ ++L   M+ +N Q        +L  C     +  G+Q+H+   R L 
Sbjct: 389 LSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLL 448

Query: 108 NGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
           + D F     V + LV  Y+KC  + +A  +F ++  ++V  W +II       L+++A 
Sbjct: 449 HNDMF-----VASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAF 503

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
             F +M+E+G+ P      +++ +C  L  +  GR +H  V+K G+D  V+V S+LIDMY
Sbjct: 504 DFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMY 563

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            KCG++++AR  FD M+ +N+VAWN MI GY QNGL ++A+ +F  M     +P  V+  
Sbjct: 564 AKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFI 623

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLG--------SSIINFYSKVGLLEDAEV 339
           ++L+  ++   +D+     A+A  N ME  N  G        + +I+   + G   + E 
Sbjct: 624 AVLTGCSHSGLVDK-----AMAFFNSME--NSYGIIPLAEHYTCLIDALGRAGRFVEVEA 676

Query: 340 VFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
           +  +M  + D + W +L+A+ V    +++           KC     A+ +F  I  ++ 
Sbjct: 677 LIHKMPCKDDPIIWEVLLAACVVHHNAEL----------GKCA----AEHLFR-IDPKNP 721

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
             +  L   YA LGR G+AS +   M   G+
Sbjct: 722 SPYVLLSNIYASLGRHGDASAVRALMSNRGV 752



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 185/411 (45%), Gaps = 66/411 (16%)

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
           D  L + ++  YS+ GL   A + F  +   +  ++N  +++  ++G             
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGD------------ 89

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA-DLGRSGEASRLFYQMQLEGISPNIIS 435
                 +D A+ +   +  R+ V WNT+++A A   G  GEA  ++ +M+ EG+ P   +
Sbjct: 90  ------LDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFT 143

Query: 436 WNSVI-----LGFLRNGQM-----------------NEAKDMFLQMQSLG---------V 464
             SV+     L  L +G+                  N    M+ +  S+G          
Sbjct: 144 LASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMA 203

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC-----TDVA-- 517
           +PN +++T ++ GL Q    ++A+  F  M  +G+     +++  L AC     TD +  
Sbjct: 204 RPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVA 263

Query: 518 -SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
            + R G+AIH  ++R        +  SL+DMY KC  + +A +VF+  PS  +  +N +I
Sbjct: 264 RAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILI 323

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +G+   G   +A+ +   +Q+ G +P+ +T++N+L +C  A  V+    +F     D   
Sbjct: 324 TGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMF-----DKIS 378

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMP---CDPDAHIIGSLLSTCVK 684
           +PS+  +  +++   +     + + +   M      PD   +  +LS+C K
Sbjct: 379 RPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSK 429


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  365 bits (936), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 222/716 (31%), Positives = 370/716 (51%), Gaps = 97/716 (13%)

Query: 161 GLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD-GCVF 218
           G   +AL  F++  +  G       L  ++K CG++     G+ +H   ++ G D G + 
Sbjct: 33  GFVHQALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIR 92

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V +SL+DMY     + + RKVF+GM+ RNVV W S++ GY+Q G+  + + +F+ M  EG
Sbjct: 93  VGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEG 152

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V P   + +S+LS  A+   +D G+  HA ++  G      + +S++N Y+K GL+E+A 
Sbjct: 153 VWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEAR 212

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQ-----------------------SDVV------- 368
           VVF RM  RD+V+WN L+A  V +G+                       S V+       
Sbjct: 213 VVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLK 272

Query: 369 ----------------------VASSIVDMYAKCERIDNAKQVFNSIIL---RDVVLWNT 403
                                 V ++++D Y K  ++D A  VF  +++   ++VV W  
Sbjct: 273 HLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVF--LLMSGSQNVVSWTA 330

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------------------- 440
           ++      G    A+ LF +M+ +G++PN +++++++                       
Sbjct: 331 MIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQIHAQVIKTNYECT 390

Query: 441 --------LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
                   + + +     EA  +F  +     Q ++++W+ +++   Q    N A   F 
Sbjct: 391 PTVGTALMVSYSKLCSTEEALSIFKMID----QKDVVSWSAMLTCYAQAGDCNGATNAFI 446

Query: 493 EMLETGIKPSTTTITCALSAC-TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
           +M   G+KP+  TI+ A+ AC +  A +  GR  H   I+H       + ++LV MYA+ 
Sbjct: 447 KMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARK 506

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G+I  A+ VF+    ++L  +N+M+SGYA HG + +AL +F+ ++ +GID D +TF +++
Sbjct: 507 GSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVI 566

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
             C+HAGLV EG + F  M  D+ + P+M+H+ C+V+L SR G LDE + +I  MP    
Sbjct: 567 MGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAG 626

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
             I  +LL  C      EL +  +E LL LEP +   YV LSN Y+A+G+W E  +VR +
Sbjct: 627 PTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKL 686

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKVFC 787
           M  K +RK  GCSWIQI  ++H F+A D+SHP +E+IYA L    M  +L  + +C
Sbjct: 687 MDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLR--AMTAKLKQEGYC 740



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 193/417 (46%), Gaps = 58/417 (13%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA+ L  + +     +    Y  ++  C   + +   +Q+H+ +LK+G  F     V T 
Sbjct: 241 EALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHG--FHSYGNVMTA 298

Query: 122 LVVFYAKCDALDVASRLFCRLR-VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
           L+  Y K   LD A  +F  +   +NV SW A+I    + G    A   F  M+EDGV+P
Sbjct: 299 LMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAP 358

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           ++     +L    A     F   +H  V+K  ++    V ++L+  Y K    EEA  +F
Sbjct: 359 NDLTYSTILTVSEA----SFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIF 414

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA-L 299
             +  ++VV+W++M+  Y Q G    A   F +MT+ G++P   +++S + A A+  A +
Sbjct: 415 KMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGV 474

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
           D G+Q HA+++ +       + S++++ Y++ G +E+A+ VF R  +RD+++WN +++ Y
Sbjct: 475 DLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGY 534

Query: 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
            Q G S                                                  +A  
Sbjct: 535 AQHGYSQ-------------------------------------------------KALD 545

Query: 420 LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWTTLI 475
           +F QM++EGI  + +++ SVI+G    G + E +  F L ++  G+ P +  +  ++
Sbjct: 546 VFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMV 602


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 221/758 (29%), Positives = 369/758 (48%), Gaps = 105/758 (13%)

Query: 83  GELLQGCVYKRDMYTGQQIHARILK---NGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
             L+Q C+  +   +G+ +HAR+ +     D F  N ++E      Y+KCD +  A  +F
Sbjct: 10  ANLVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIE-----LYSKCDHIASACHVF 64

Query: 140 CRLRVKNVFSWAAIIGLNC-------------------------------RVGLSEKALI 168
             +  KN+FSW AI+   C                               R G   +AL 
Sbjct: 65  DNIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALD 124

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            +  +  DGV P +     V  ACG+L     GR  HG V+KVG +  ++V ++L+ MY 
Sbjct: 125 TYDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYA 184

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG   +A +VF  +   N V + +M+ G  Q    +EA  +F  M  +G+    VS++S
Sbjct: 185 KCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSS 244

Query: 289 ILSASAN----------LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           +L   A           +    +GKQ H ++V  G E D  L +S+++ Y+K+G ++ AE
Sbjct: 245 MLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAE 304

Query: 339 VVFSRMVERDIVTWNLLI------------ASYVQSGQSDVVVASSI--VDMYAKCER-- 382
            VF  +    +V+WN++I            A Y+Q  QSD      +  ++M   C +  
Sbjct: 305 KVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSG 364

Query: 383 -IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN-----IISW 436
            +   +Q+F+ +    +  WN +L+ Y       EA  LF +MQ +   P+     +I  
Sbjct: 365 DVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILS 424

Query: 437 NSVILGFL------------------------------RNGQMNEAKDMFLQMQSLGVQP 466
           +   LGFL                              + G+M  +K +F ++  L V  
Sbjct: 425 SCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDV-- 482

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
             + W ++++G + NS G +A+ FF++M + G  PS  +    +S+C  ++SL  G+  H
Sbjct: 483 --VCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFH 540

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
             +++        + +SL++MY KCG+++ A+  FD+ P +    +N MI GYA +G   
Sbjct: 541 AQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGH 600

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
            AL L+ ++   G  PD IT+  +L ACSH+ LV+EGLE+F  M   + V P + H+ C+
Sbjct: 601 NALCLYNDMISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCI 660

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           ++ LSR G  +E   ++  MPC  DA +   +LS+C       LA+  +E L +L+P N 
Sbjct: 661 IDCLSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSCRIHANLSLAKRAAEELYRLDPQNS 720

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
            +YV L+N Y++ G+W++   VRD+M    +RK+PG S
Sbjct: 721 ASYVLLANMYSSLGKWDDAHVVRDLMSHNQVRKDPGYS 758



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 158/310 (50%), Gaps = 4/310 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S  ++    REAV+L  +M+ +           +L  C     +  G+++HA   K G 
Sbjct: 388 LSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQKFG- 446

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + YV + L+  Y+KC  ++++  +F +L   +V  W +++       L + AL  F
Sbjct: 447 -FYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFF 505

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M++ G  P  F    V+ +C  L  +  G+  H  ++K GF   +FV SSLI+MY KC
Sbjct: 506 KKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKC 565

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           GD+  AR  FD M  RN V WN MI GY QNG    A+ ++ +M   G +P  ++  ++L
Sbjct: 566 GDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVL 625

Query: 291 SASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERD 348
           +A ++   +DEG +  +A+    G+       + II+  S+ G   + EV+   M  + D
Sbjct: 626 TACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKDD 685

Query: 349 IVTWNLLIAS 358
            V W ++++S
Sbjct: 686 AVVWEVVLSS 695


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 212/649 (32%), Positives = 350/649 (53%), Gaps = 57/649 (8%)

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDG 215
           C++G  E A+      Q+  +    +   +VL+ C  L     G+ VH  +    VG DG
Sbjct: 77  CQLGDLENAMELICMCQKSELETKTY--GSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDG 134

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            + +   L+  Y  CGDL+E R+VFD M  +NV  WN M+  Y + G  +E+I +F  M 
Sbjct: 135 ALGL--KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMV 192

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            +G+E  R       SA    D L               + D +  +S+I+ Y   GL E
Sbjct: 193 EKGIEGKRPE-----SAFELFDKL--------------CDRDVISWNSMISGYVSNGLTE 233

Query: 336 DAEVVFSRM----VERDIVTWNLLIASYVQSG-----------------QSDVVVASSIV 374
               ++ +M    ++ D+ T   ++     SG                 +  +  +++++
Sbjct: 234 RGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLL 293

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
           DMY+KC  +D A +VF  +  R+VV W +++A Y   GRS  A +L  QM+ EG+  +++
Sbjct: 294 DMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVV 353

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           +  S++    R+G ++  KD+   +++  ++ NL     L+    +      A   F  M
Sbjct: 354 AITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTM 413

Query: 495 LETGI----------KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
           +   I          KP + T+ C L AC  +++L  G+ IHGY++R+       +  +L
Sbjct: 414 VVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANAL 473

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           VD+Y KCG +  A+ +FD+ PSK+L  +  MI+GY MHG   EA+A F  ++  GI+PD 
Sbjct: 474 VDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDE 533

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
           ++F +IL ACSH+GL+ +G   F  M +D  ++P +EH+ C+V+LLSR GNL +A   + 
Sbjct: 534 VSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFME 593

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
           T+P  PDA I G+LL  C   ++ ELAE ++E + +LEP+N G YV L+N YA + +W E
Sbjct: 594 TLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEE 653

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR-SHPKTEEIYATL 772
           V ++R+ + ++GLRKNPGCSWI+I  ++++FV+ +  SHP ++ I + L
Sbjct: 654 VKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLL 702



 Score =  209 bits (531), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 145/527 (27%), Positives = 245/527 (46%), Gaps = 88/527 (16%)

Query: 72  CRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131
           C+  ++  + YG +LQ C   +    G+++H+ I  N      +  +  KLV FYA C  
Sbjct: 92  CQKSELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNS--VGVDGALGLKLVSFYATCGD 149

Query: 132 LDVASRLFCRLRVKNVF------------------------------------------- 148
           L    R+F  +  KNV+                                           
Sbjct: 150 LKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFD 209

Query: 149 --------SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
                   SW ++I      GL+E+ L  + +M   G+  D   + +VL  C   G +  
Sbjct: 210 KLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSL 269

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+AVH   +K  F+  +  +++L+DMY KCGDL+ A +VF+ M  RNVV+W SMI GY +
Sbjct: 270 GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTR 329

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +G ++ AI++  +M  EGV+   V++TSIL A A   +LD GK  H     N ME +  +
Sbjct: 330 DGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFV 389

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA-------------------SYVQ 361
            +++++ Y+K G +E A  VFS MV +DI++WN +I                    S ++
Sbjct: 390 CNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALE 449

Query: 362 SGQ------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
            G+            SD  VA+++VD+Y KC  +  A+ +F+ I  +D+V W  ++A Y 
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 509

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNL 468
             G   EA   F +M+  GI P+ +S+ S++     +G + +    F  M++   ++P L
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
             +  ++  L++    ++A  F + +    I P  T     L  C +
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFMETL---PIAPDATIWGALLCGCRN 613


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 236/815 (28%), Positives = 383/815 (46%), Gaps = 97/815 (11%)

Query: 62   EAVDLLTEMKCRNFQIGPEIYGELLQGCVYK-RD--MYTGQQIHARILKNGDFFARNEYV 118
            +A ++L  M+     +       L+  C  + RD  +  G  IHA   + G     N Y+
Sbjct: 326  KAFEMLRGMREPGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAG--LMGNVYI 383

Query: 119  ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
             T L+  Y     +  A RLF  +  +NV SW A++      G  E+AL  + +M+ DGV
Sbjct: 384  GTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGV 443

Query: 179  SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
              +      V+  CG+L     G  V   V+  G    V VA+SLI M+G  G + +A K
Sbjct: 444  PCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEK 503

Query: 239  VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
            +FD M   + ++WN+MI  Y   G+  +   VF +M   G+ P   ++ S++S  A+ D 
Sbjct: 504  LFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDH 563

Query: 299  LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
               G   H++ + + ++    + ++++N YS  G L DAE +F  M  RD+++WN +I+S
Sbjct: 564  FSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISS 623

Query: 359  YVQ----------------------------------------------------SGQSD 366
            YVQ                                                    S Q +
Sbjct: 624  YVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRN 683

Query: 367  VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
            ++V +S++ MY KC  +++A++VF S+   D+V +N L+  YA L    +A ++F  M+ 
Sbjct: 684  LLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRS 743

Query: 427  EGISPNIISW------------------------------------NSVILGFLRNGQMN 450
             GI PN I+                                     NS+I  + + G + 
Sbjct: 744  AGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLE 803

Query: 451  EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
             + ++F  +       N+++W  +I+   Q   G EA+  F +M   G K     +   L
Sbjct: 804  SSTNIFNSI----TNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECL 859

Query: 511  SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
            S+C  +ASL  G  +HG  ++  L   + +V + +DMY KCG + +  +V      +   
Sbjct: 860  SSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQ 919

Query: 571  VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
             +N +ISGYA +G   EA   FK +   G  PD +TF  +L+ACSHAGLV++G++ +  M
Sbjct: 920  CWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSM 979

Query: 631  FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETEL 690
             S   V P ++H  C+V+LL R G   EA + I  MP  P+  I  SLLS+       E+
Sbjct: 980  ASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEI 1039

Query: 691  AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGE 750
                ++ LL+L+P +   YV LSN YA + RW +V ++R  MK   + K P CSW+++  
Sbjct: 1040 GRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPACSWLKLKN 1099

Query: 751  ELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
            E+  F   DR H   E+IYA L  + + +R V  +
Sbjct: 1100 EVSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYI 1134



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 155/627 (24%), Positives = 278/627 (44%), Gaps = 102/627 (16%)

Query: 138 LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG- 196
           LF  +  +   +W   +    R G   KA      M+E GV    F L +++ AC   G 
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGR 358

Query: 197 --WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
              +  G A+H    + G  G V++ ++L+ +YG  G + +A+++F  M  RNVV+W ++
Sbjct: 359 DEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTAL 418

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           +V    NG  EEA+R + +M  +GV     +  +++S   +L+    G Q  +  +++G+
Sbjct: 419 MVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGL 478

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG----------- 363
           +    + +S+I  +  +G + DAE +F RM E D ++WN +I+ Y   G           
Sbjct: 479 QNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSD 538

Query: 364 -----------------------------------------QSDVVVASSIVDMYAKCER 382
                                                     S V V +++V+MY+   +
Sbjct: 539 MRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGK 598

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-- 440
           + +A+ +F ++  RD++ WNT++++Y     S +A +   Q+     SPN ++++S +  
Sbjct: 599 LSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGA 658

Query: 441 -------------------LGFLRN-----------GQMNEAKDMFLQMQSLGVQPNLIT 470
                              L   RN           G+ N  +D     QS+    ++++
Sbjct: 659 CSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH-DIVS 717

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN-GRAIHGYL 529
           +  LI G      G +A+  F  M   GIKP+  T+     +      L N GR +H Y+
Sbjct: 718 YNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYI 777

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
           IR        +  SL+ MYAKCGN+  +  +F+   +K +  +NA+I+     G   EAL
Sbjct: 778 IRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEAL 837

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-VGMFS-----DHQVKPSMEHF 643
            LF ++Q  G   D +     L++C+    + EG++L  +GM S      + V  +M+ +
Sbjct: 838 KLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMY 897

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDP 670
           G       +CG +DE L+V+      P
Sbjct: 898 G-------KCGKMDEMLQVVPDQAIRP 917


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 215/678 (31%), Positives = 347/678 (51%), Gaps = 87/678 (12%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           L +A ++F R+   +  ++ A+I     +G    A+  +  M    V+P+ +  P VLKA
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C AL  +  GR +H +    G    +FV+++LID+Y +C     AR VF  M  R+VVAW
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAW 169

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           N+M+ GY  +G+   AI    +M   G + P   ++ S+L   A   AL +G   HA   
Sbjct: 170 NAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYC- 228

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA 370
                                                        + + ++  +  V++ 
Sbjct: 229 ---------------------------------------------LRACLEQNEEQVLIG 243

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG-- 428
           ++++DMYAKC+++  A +VF+ + +R+ V W+ L+  +    R  EA  LF  M +EG  
Sbjct: 244 TALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLC 303

Query: 429 ----------------------------------ISPNIISWNSVILGFLRNGQMNEAKD 454
                                             I  ++ + NS++  + + G +NEA  
Sbjct: 304 FLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATM 363

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
            F ++       + I++  L+SG  QN    EA L F++M    ++P   T+   + AC+
Sbjct: 364 FFDEI----AVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACS 419

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
            +A+L++G+  HG +I   L L T I  SL+DMYAKCG I  +++VFD  P++++  +N 
Sbjct: 420 HLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNT 479

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           MI+GY +HGL  EA  LF  ++ +G  PD +TF  ++ ACSH+GLV EG   F  M   +
Sbjct: 480 MIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKY 539

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            + P MEH+ C+V+LL+R G LDEA + I +MP   D  + G+LL  C      +L + +
Sbjct: 540 GILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQV 599

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           S  + +L P+  GN+V LSN ++A+GR++E ++VR I K KG +K+PG SWI+I   LH 
Sbjct: 600 SRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHA 659

Query: 755 FVACDRSHPKTEEIYATL 772
           FV  D+SHP + +IY  L
Sbjct: 660 FVGGDQSHPCSRDIYHEL 677



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 232/492 (47%), Gaps = 64/492 (13%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGE--LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           A+DL   M    F++ P  Y    +L+ C    D+  G+ IHA     G     + +V T
Sbjct: 84  AIDLYRSM--LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAG--LHTDLFVST 139

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED-GVS 179
            L+  Y +C     A  +F ++ +++V +W A++      G+   A+   ++MQ+  G+ 
Sbjct: 140 ALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLR 199

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC---VFVASSLIDMYGKCGDLEEA 236
           P+   L ++L      G +  G ++H Y L+   +     V + ++L+DMY KC  L  A
Sbjct: 200 PNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYA 259

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV-EPTRVSVTSILSASAN 295
            +VF GM  RN V W+++I G+V      EA  +F +M +EG+   +  SV S L   A+
Sbjct: 260 CRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCAS 319

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L  L  G Q HA+   +G+  D    +S+++ Y+K GL+ +A + F  +  +D +++  L
Sbjct: 320 LADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGAL 379

Query: 356 IASYVQSGQS-------------------------------------------------- 365
           ++  VQ+G++                                                  
Sbjct: 380 LSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGL 439

Query: 366 --DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
             +  + +S++DMYAKC +ID ++QVF+ +  RDVV WNT++A Y   G   EA+ LF  
Sbjct: 440 ALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLG 499

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNS 482
           M+ +G +P+ +++  +I     +G + E K  F  M    G+ P +  +  ++  L +  
Sbjct: 500 MKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGG 559

Query: 483 CGNEAILFFQEM 494
             +EA  F Q M
Sbjct: 560 LLDEAYQFIQSM 571



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 150/282 (53%), Gaps = 18/282 (6%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNG---DFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
           L+ C    D++ G Q+HA I K+G   D  A N      L+  YAK   ++ A+  F  +
Sbjct: 314 LRVCASLADLHMGTQLHALIAKSGIHADLTASNS-----LLSMYAKAGLINEATMFFDEI 368

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
            VK+  S+ A++    + G +E+A + F +MQ   + PD   + +++ AC  L  +  G+
Sbjct: 369 AVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGK 428

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
             HG V+  G      + +SLIDMY KCG ++ +R+VFD M AR+VV+WN+MI GY  +G
Sbjct: 429 CSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHG 488

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ-----AHAVAVINGMELD 317
           L +EA  +F  M  +G  P  V+   +++A ++   + EGK       H   ++  ME  
Sbjct: 489 LGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 548

Query: 318 NVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIAS 358
             +    ++  ++ GLL++A + + S  ++ D+  W  L+ +
Sbjct: 549 ICM----VDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGA 586



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 11/121 (9%)

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G +  A++VFD  P+ +   YNA+I  Y+  G    A+ L++++ +  + P+  TF  +L
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 612 NACS-----HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
            ACS      AG          G+ +D  V  ++      ++L  RC     A  V   M
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTAL------IDLYIRCARFGPARNVFAKM 161

Query: 667 P 667
           P
Sbjct: 162 P 162


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  364 bits (935), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 206/609 (33%), Positives = 324/609 (53%), Gaps = 62/609 (10%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLID---MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
           R +H  ++K G     +  S LI+   +      L  A  VFD +   N++ WN+M  G+
Sbjct: 19  RIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGH 78

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             +     A+ ++  M   G+ P   +   +L A A   A  EG+Q H   +  G +LD 
Sbjct: 79  ALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDL 138

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
            + +S+I  Y K G  EDA  VF +   RD+V++  LI  Y  +G               
Sbjct: 139 YVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGY-------------- 184

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------ 432
               I +A+++F+ I ++DVV WN L++ YA+ G   EA  LF +M    + P+      
Sbjct: 185 ----IXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVT 240

Query: 433 ----------------IISW-------------NSVILGFLRNGQMNEAKDMFLQMQSLG 463
                           + SW             N++I  +++ G++  A  +F  +    
Sbjct: 241 VLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLS--- 297

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
              ++I+W TLI G T  +   EA+L FQEML +G  P+  T+   L AC  + ++  GR
Sbjct: 298 -YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGR 356

Query: 524 AIHGYLIRH--DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
            IH Y+ +    +  P+ + TSL+DMYAKCG+I  A++VFD   ++ L  +NAMI G+AM
Sbjct: 357 WIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAM 416

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HG A  A  +F  +++ GI+PD ITF  +L+ACSH+G+++ G  +F  M  D+++ P +E
Sbjct: 417 HGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLE 476

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+GC+++LL   G   EA  +I +M  DPD  I  SLL  C      EL E  +++L+++
Sbjct: 477 HYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKI 536

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           EP N G+YV LSN YA +GRWNEV++ R ++ +KG++K PGCS I+I   +H F+  D+ 
Sbjct: 537 EPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKL 596

Query: 762 HPKTEEIYA 770
           HP+  EIY 
Sbjct: 597 HPRNREIYG 605



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 214/419 (51%), Gaps = 33/419 (7%)

Query: 71  KCRNFQIGPEIYGELLQ-GCVYKRDMYTGQQIHARILKNG------DFFARNEYVE---- 119
           K + F+ G +I+G +L+ GC    D+Y    + A  +KNG        F ++ + +    
Sbjct: 115 KSKAFREGQQIHGHVLKLGC--DLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSY 172

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           T L+  YA    +  A ++F  + VK+V SW A+I      G  ++AL  F EM +  V 
Sbjct: 173 TALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVK 232

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           PD   +  VL AC     +  GR VH ++   GF   + + ++LID+Y KCG++E A  +
Sbjct: 233 PDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGL 292

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F+G+  ++V++WN++I GY    L +EA+ +F EM   G  P  V++ SIL A A+L A+
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAI 352

Query: 300 DEGKQAHAV--AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
           D G+  H      + G+   + L +S+I+ Y+K G +E A+ VF  M+ R + +WN +I 
Sbjct: 353 DIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIF 412

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
            +   G+     A+   D++++  R D         I  D + +  LL+A +  G     
Sbjct: 413 GFAMHGR-----ANPAFDIFSRM-RKDG--------IEPDDITFVGLLSACSHSGMLDLG 458

Query: 418 SRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
             +F  M  +  I+P +  +  +I     +G   EA++M   + S+ + P+ + W +L+
Sbjct: 459 RHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEM---INSMEMDPDGVIWCSLL 514



 Score =  172 bits (436), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 139/537 (25%), Positives = 244/537 (45%), Gaps = 99/537 (18%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV---VFYAKCDALDVASRLFCR 141
           LL  C   + + + + IHA+++K G       Y  +KL+   V     D L  A  +F  
Sbjct: 8   LLHNC---KTLQSLRIIHAKMIKTG--LHNTNYALSKLIEFSVLSPHFDGLTYAISVFDS 62

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           ++  N+  W  +   +        AL  +V M   G+ P+++  P +LKAC        G
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREG 122

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-------------------- 241
           + +HG+VLK+G D  ++V +SLI MY K G  E+ARKVFD                    
Sbjct: 123 QQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASN 182

Query: 242 GMI-----------ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G I            ++VV+WN++I GY + G  +EA+ +F EM    V+P   ++ ++L
Sbjct: 183 GYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVL 242

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA A   +++ G+Q H+    +G   +  + +++I+ Y K G +E A  +F  +  +D++
Sbjct: 243 SACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVI 302

Query: 351 TWNLLIASY----------------VQSGQSDVVVA------------------------ 370
           +WN LI  Y                ++SG+S   V                         
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYI 362

Query: 371 --------------SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
                         +S++DMYAKC  I+ A+QVF+S++ R +  WN ++  +A  GR+  
Sbjct: 363 DKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANP 422

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLI 475
           A  +F +M+ +GI P+ I++  ++     +G ++  + +F  M +   + P L  +  +I
Sbjct: 423 AFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMI 482

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA-LSACTDVASLRNGRAIHGYLIR 531
             L  +    EA    +EM+ +        I C+ L AC    ++  G +    LI+
Sbjct: 483 DLLGHSGLFKEA----EEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIK 535



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 179/374 (47%), Gaps = 18/374 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  ++    +EA++L  EM   N +        +L  C     +  G+Q+H+ I  +G 
Sbjct: 207 ISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHG- 265

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  N  +   L+  Y KC  ++ AS LF  L  K+V SW  +IG    + L ++AL+ F
Sbjct: 266 -FGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLF 324

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSLIDMYG 228
            EM   G SP+   + ++L AC  LG +  GR +H Y+ K   G      + +SLIDMY 
Sbjct: 325 QEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYA 384

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCGD+E A++VFD M+ R++ +WN+MI G+  +G    A  +F  M  +G+EP  ++   
Sbjct: 385 KCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVG 444

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDAEVVFS 342
           +LSA ++   LD G+      +   M  D  +   +      I+     GL ++AE + +
Sbjct: 445 LLSACSHSGMLDLGRH-----IFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMIN 499

Query: 343 RM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
            M ++ D V W  L+ +    G  +V +  S      K E  ++   V  S I      W
Sbjct: 500 SMEMDPDGVIWCSLLKACKMHG--NVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRW 557

Query: 402 NTLLAAYADLGRSG 415
           N +    A L   G
Sbjct: 558 NEVAKRRALLNDKG 571


>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 824

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 233/719 (32%), Positives = 374/719 (52%), Gaps = 43/719 (5%)

Query: 82  YGELLQGCVYKRDMYTGQQIHA---RILKNGDFFARNEYVETKLVVFYA-----KCDALD 133
           Y   L+ C   +++  G+ +H    R L+N      N  +   +    A      C   D
Sbjct: 110 YSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYD 169

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACG 193
           V  ++F  +R KNV +W  +I    + G + +A   F  M    + P      NV  A  
Sbjct: 170 VVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVA 229

Query: 194 ALGWVGFGRAVHGYVLKVG--FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
               +      +G +LK+G  +   +FV SS I MY + GDLE +R+VFD  + RN+  W
Sbjct: 230 TSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVW 289

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA--NLDALDEGKQAHAVA 309
           N+MI  YVQN    E+I +F E  +   E     VT +L+ASA   L  ++ G+Q H   
Sbjct: 290 NTMIGVYVQNDCLVESIELFLE-AIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFV 348

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV 369
             N  EL  V+ +S++  YS+ G ++ +  VF  M ERD+V+WN +I+++VQ+G  D   
Sbjct: 349 SKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDD--- 405

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL-----GRSGEASRLFYQM 424
              ++ +Y      +  KQ F      D +    LL+A ++L     G+      +   +
Sbjct: 406 -EGLMLVY------EMQKQGFKI----DYITVTALLSAASNLRNKEIGKQTHGFLIRQGI 454

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
           Q EG++  +I        + ++G +  ++ +F    S   + +  TW ++ISG TQN   
Sbjct: 455 QFEGMNSYLIDM------YAKSGLIRISQKLF--EGSGYAERDQATWNSMISGYTQNGHT 506

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
            E  L F++MLE  I+P+  T+   L AC+ V S+  G+ +HG+ IR  L     + ++L
Sbjct: 507 EETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASAL 566

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           VDMY+K G I  A+ +F  +  +    Y  MI GY  HG+   A++LF ++Q+ GI PD+
Sbjct: 567 VDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQELGIKPDA 626

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
           I F  +L+ACS++GLV+EGL++F  M   + ++PS EH+ C+ ++L R G ++EA   + 
Sbjct: 627 IAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVK 686

Query: 665 TMPCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN--PGNYVALSNAYAASGR 721
            +  + + A + GSLL +C    E ELAE +SE L +L+      G  V LSN YA    
Sbjct: 687 GLGEEGNIAELWGSLLGSCRLHGELELAETVSERLAKLDKGKNFSGYEVLLSNMYAEEQN 746

Query: 722 WNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           W  V +VR  M+EKGL+K  G S I++   ++ FV+ D+ HP + EIY  +  L  ++R
Sbjct: 747 WKSVDRVRKGMREKGLKKEVGRSGIEVAGHVNCFVSRDQEHPHSGEIYDAIDGLAKNMR 805



 Score =  187 bits (474), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 138/495 (27%), Positives = 245/495 (49%), Gaps = 53/495 (10%)

Query: 72  CRNFQI--------GPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV 123
           CR F I         P  +  +       R +      +  +LK GD + ++ +V +  +
Sbjct: 203 CRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAI 262

Query: 124 VFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL----NCRVGLSEKAL--IGFVEMQEDG 177
             YA+   L+ + R+F     +N+  W  +IG+    +C V   E  L  IG  E+  D 
Sbjct: 263 SMYAELGDLESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDE 322

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           V+   F+L     A   L  V  GR  HG+V K   +  + + +SL+ MY +CG ++++ 
Sbjct: 323 VT---FLL--AASAVSGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSF 377

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
            VF  M  R+VV+WN+MI  +VQNGL++E + + YEM  +G +   ++VT++LSA++NL 
Sbjct: 378 GVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLR 437

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF--SRMVERDIVTWNLL 355
             + GKQ H   +  G++ +  + S +I+ Y+K GL+  ++ +F  S   ERD  TWN +
Sbjct: 438 NKEIGKQTHGFLIRQGIQFEG-MNSYLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSM 496

Query: 356 IASYVQSGQSD-----------------VVVASSIVDMYAKCERIDNAKQV----FNSII 394
           I+ Y Q+G ++                  V  +SI+   ++   +D  KQ+        +
Sbjct: 497 ISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYL 556

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
            ++V + + L+  Y+  G    A  +F Q +      N +++ ++ILG+ ++G    A  
Sbjct: 557 DQNVFVASALVDMYSKAGAIKYAENMFSQTK----ERNSVTYTTMILGYGQHGMGERAIS 612

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSAC 513
           +FL MQ LG++P+ I +  ++S  + +   +E +  F++M E   I+PS+    C     
Sbjct: 613 LFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHYCC----I 668

Query: 514 TDVASLRNGRAIHGY 528
           TD+   R GR    Y
Sbjct: 669 TDMLG-RVGRVNEAY 682



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 169/334 (50%), Gaps = 20/334 (5%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           E + L+ EM+ + F+I       LL      R+   G+Q H  +++ G  F   E + + 
Sbjct: 406 EGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQF---EGMNSY 462

Query: 122 LVVFYAKCDALDVASRLF--CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           L+  YAK   + ++ +LF       ++  +W ++I    + G +E+  + F +M E  + 
Sbjct: 463 LIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIR 522

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           P+   + ++L AC  +G V  G+ +HG+ ++   D  VFVAS+L+DMY K G ++ A  +
Sbjct: 523 PNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENM 582

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F     RN V + +MI+GY Q+G+ E AI +F  M   G++P  ++  ++LSA +    +
Sbjct: 583 FSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLV 642

Query: 300 DEGKQAHAVAVINGM-ELDNVLGSS-----IINFYSKVGLLEDA-EVVFSRMVERDIVT- 351
           DEG     + +   M E+ N+  SS     I +   +VG + +A E V     E +I   
Sbjct: 643 DEG-----LKIFEDMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAEL 697

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDN 385
           W  L+ S    G+ +  +A ++ +  AK ++  N
Sbjct: 698 WGSLLGSCRLHGELE--LAETVSERLAKLDKGKN 729



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 203/449 (45%), Gaps = 87/449 (19%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR---VSVT 287
           G+ + AR++FD +     V WN++I+G++ N L  EA+ +FY    +    T+    + +
Sbjct: 53  GNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEAL-LFYSRMKKTAPFTKCDAYTYS 111

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY--------SKVGLLEDAEV 339
           S L A A    L  GK  H   +        V+ +S++N Y        S++   E   V
Sbjct: 112 STLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVV 171

Query: 340 --VFSRMVERDIVTWNLLIASYVQSGQSDVVVAS--------------SIVDMYAKCERI 383
             VF  M  +++V WN LI+ YV++G++                    S V+++      
Sbjct: 172 RKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATS 231

Query: 384 DNAKQ--VFNSIIL-------RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
            + K+  VF  ++L       +D+ + ++ ++ YA+LG    + R+F       +  NI 
Sbjct: 232 RSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSC----VERNIE 287

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
            WN++I  +++N  + E+ ++FL+                       + G++ I+     
Sbjct: 288 VWNTMIGVYVQNDCLVESIELFLE-----------------------AIGSKEIV----- 319

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
                     T   A SA + +  +  GR  HG++ ++   LP  I+ SL+ MY++CG +
Sbjct: 320 ------SDEVTFLLAASAVSGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFV 373

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
            ++  VF     +++  +N MIS +  +GL  E L L   +Q++G   D IT T +L+A 
Sbjct: 374 QKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAA 433

Query: 615 S-----------HAGLVNEGLELFVGMFS 632
           S           H  L+ +G++ F GM S
Sbjct: 434 SNLRNKEIGKQTHGFLIRQGIQ-FEGMNS 461



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 114/253 (45%), Gaps = 27/253 (10%)

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
           ++P   S  S +    + G    A+ +F  +     +P  + W T+I G   N+  +EA+
Sbjct: 35  LTPQTPSIRSRLSKICQEGNPQLARQLFDAIP----KPTTVLWNTIIIGFICNNLPHEAL 90

Query: 489 LFFQEMLETG--IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP---IVTS 543
           LF+  M +T    K    T +  L AC +  +L+ G+A+H +LIR   CL      +  S
Sbjct: 91  LFYSRMKKTAPFTKCDAYTYSSTLKACAETKNLKAGKAVHCHLIR---CLQNSSRVVHNS 147

Query: 544 LVDMYAKCGNIHQA----------KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
           L++MY  C N   +          ++VFD    K +  +N +IS Y   G   EA   F 
Sbjct: 148 LMNMYVSCLNAPGSELDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFA 207

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM---FSDHQVKPSMEHFGCVVNLL 650
            + +  I P  ++F N+  A + +  + +   +F G+     D  VK  +      +++ 
Sbjct: 208 IMMRMEIKPSPVSFVNVFPAVATSRSIKKA-NVFYGLMLKLGDEYVK-DLFVVSSAISMY 265

Query: 651 SRCGNLDEALRVI 663
           +  G+L+ + RV 
Sbjct: 266 AELGDLESSRRVF 278


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 225/723 (31%), Positives = 351/723 (48%), Gaps = 80/723 (11%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           LQGC+ + D   G+ +H  +++ G     + +    L+  Y K   L  A RLF R+  +
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           N+ S+  ++  + + G  E A   F  ++ +G   + FVL  +LK   A+   G    VH
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
               K+G D   FV S LID Y  C  + +A  VF+G++ ++ V W +M+  Y +N   E
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
            A RVF +M + G +P   ++TS+L A+  L ++  GK  H  A+               
Sbjct: 246 NAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKT------------- 292

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDN 385
                   L D E                              V  +++DMYAKC  I +
Sbjct: 293 --------LNDTEPH----------------------------VGGALLDMYAKCGDIKD 316

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A+  F  I   DV+L + +++ YA   ++ +A  LF ++    + PN  S +SV+     
Sbjct: 317 ARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTN 376

Query: 446 NGQMNEAK-------------DMF------------------LQMQSLGVQPNLITWTTL 474
             Q++  K             D+F                  L++ S     N ++W T+
Sbjct: 377 MVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTI 436

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           + G +Q+  G EA+  F EM    +  +  T +  L AC   AS+R+   IH  + +   
Sbjct: 437 VVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTF 496

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
              T I  SL+D YAKCG I  A +VF     +++  +NA+ISGYA+HG A +AL LF  
Sbjct: 497 NNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDR 556

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           + +  ++ + ITF  +L+ CS  GLVN GL LF  M  DH +KPSMEH+ C+V LL R G
Sbjct: 557 MNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAG 616

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L++AL+ I  +P  P A +  +LLS+C+      L  + +E +L++EP +   YV LSN
Sbjct: 617 RLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSN 676

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            YAA+G  ++V+ +R  M+  G+RK PG SW++I  E+H F      HP    I A L  
Sbjct: 677 MYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEW 736

Query: 775 LGM 777
           L +
Sbjct: 737 LNL 739



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 244/493 (49%), Gaps = 39/493 (7%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC--VFVASSLIDMYGKCGDLEEARK 238
           D+F     L+ C A G    GRAVHG+V++ G  G   +F A+ L++MYGK G L  AR+
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +FD M  RN+V++ +++  + Q G  E A  +F  +  EG E  +  +T++L  +  +DA
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA 177

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
                  H+ A   G + +  +GS +I+ YS   L+ DAE VF+ +V +D V W  +++ 
Sbjct: 178 AGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQ---VFNSIILRDVVLWNTLLAAYADLGRSG 415
           Y ++         +   +++K  R+   K       S++   V L + +L      G  G
Sbjct: 238 YSEND-----CPENAFRVFSKM-RVSGCKPNPFALTSVLKAAVCLPSVVLGK----GIHG 287

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            A +      L    P++    +++  + + G + +A+  F  +       ++I  + +I
Sbjct: 288 CAIK-----TLNDTEPHV--GGALLDMYAKCGDIKDARLAFEMIP----YDDVILLSFMI 336

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           S   Q++   +A   F  ++ + + P+  +++  L ACT++  L  G+ IH + I+    
Sbjct: 337 SRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHE 396

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
               +  +L+D YAKC ++  + ++F          +N ++ G++  GL  EAL++F  +
Sbjct: 397 SDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEM 456

Query: 596 QQKGIDPDSITFTNILNACS------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
           Q   +    +T++++L AC+      HAG ++  +E     F++  V  +      +++ 
Sbjct: 457 QAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIE--KSTFNNDTVIGN-----SLIDT 509

Query: 650 LSRCGNLDEALRV 662
            ++CG + +AL+V
Sbjct: 510 YAKCGYIRDALKV 522



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 144/295 (48%), Gaps = 17/295 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILKN 108
           IS  ++  Q  +A +L   ++     + P  Y    +LQ C     +  G+QIH   +K 
Sbjct: 336 ISRYAQSNQNEQAFELF--LRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKI 393

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G     + +V   L+ FYAKC+ +D + ++F  LR  N  SW  I+    + GL E+AL 
Sbjct: 394 G--HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALS 451

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F EMQ   +        +VL+AC +   +     +H  + K  F+    + +SLID Y 
Sbjct: 452 VFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYA 511

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG + +A KVF  ++ R++++WN++I GY  +G   +A+ +F  M    VE   ++  +
Sbjct: 512 KCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVA 571

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDA 337
           +LS  ++      G   H +++ + M +D+ +  S      I+    + G L DA
Sbjct: 572 LLSVCSS-----TGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDA 621



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 24/249 (9%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA+ +  EM+          Y  +L+ C     +    QIH  I K+   F  +  +   
Sbjct: 448 EALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKST--FNNDTVIGNS 505

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  YAKC  +  A ++F  L  +++ SW AII      G +  AL  F  M +  V  +
Sbjct: 506 LIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESN 565

Query: 182 NFVLPNVLKACGALGWVGFG-------RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLE 234
           +     +L  C + G V  G       R  HG    +    C+      + + G+ G L 
Sbjct: 566 DITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCI------VRLLGRAGRLN 619

Query: 235 EARKVFDGMI--ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP----TRVSVTS 288
           +A + F G I  A + + W +++   + +  N    R   E  LE +EP    T V +++
Sbjct: 620 DALQ-FIGDIPSAPSAMVWRALLSSCIIHK-NVALGRFSAEKILE-IEPQDETTYVLLSN 676

Query: 289 ILSASANLD 297
           + +A+ +LD
Sbjct: 677 MYAAAGSLD 685


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 205/562 (36%), Positives = 324/562 (57%), Gaps = 37/562 (6%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           + LI  + K G L EAR+VFD M  RNVV+W SM+ GYV+NG   EA R+F+ M  + V 
Sbjct: 90  NGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV- 148

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEV 339
              VS T +L        L EG+   A  + + M E D V  +++I  Y + G L++A  
Sbjct: 149 ---VSWTVMLGG-----LLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARA 200

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
           +F  M +R++VTW  +++ Y ++G+ DV                  A+++F  +  R+ V
Sbjct: 201 LFDEMPKRNVVTWTAMVSGYARNGKVDV------------------ARKLFEVMPERNEV 242

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
            W  +L  Y   GR  EAS LF  M    + P ++  N +I+GF  NG++++A+ +F  M
Sbjct: 243 SWTAMLLGYTHSGRMREASSLFDAMP---VKPVVVC-NEMIMGFGLNGEVDKARRVFKGM 298

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
           +    + +  TW+ +I    +     EA+  F+ M   G+  +  ++   LS C  +ASL
Sbjct: 299 K----ERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASL 354

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
            +G+ +H  L+R +      + + L+ MY KCGN+ +AK+VF+  P K++ ++N+MI+GY
Sbjct: 355 DHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGY 414

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
           + HGL  EAL +F ++   G+ PD +TF  +L+ACS++G V EGLELF  M   +QV+P 
Sbjct: 415 SQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPG 474

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           +EH+ C+V+LL R   ++EA++++  MP +PDA + G+LL  C    + +LAE   E L 
Sbjct: 475 IEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLA 534

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           QLEP N G YV LSN YA  GRW +V  +R+ +K + + K PGCSWI++ +++H+F   D
Sbjct: 535 QLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGD 594

Query: 760 -RSHPKTEEIYATLALLGMHVR 780
            + HP+   I   L  LG  +R
Sbjct: 595 SKGHPEQPIIMKMLEKLGGLLR 616



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 193/454 (42%), Gaps = 74/454 (16%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN      L+  + K   L  A R+F  +  +NV SW +++    R G   +A   F  M
Sbjct: 84  RNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHM 143

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
               V     +L  +L+     G V   R +   + +      V   +++I  Y + G L
Sbjct: 144 PHKNVVSWTVMLGGLLQE----GRVDDARKLFDMMPEKD----VVAVTNMIGGYCEEGRL 195

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           +EAR +FD M  RNVV W +M+ GY +NG  + A ++F  M     E   VS T++L   
Sbjct: 196 DEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMP----ERNEVSWTAML--- 248

Query: 294 ANLDALDEGKQAHAVAVINGMELDN-VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
             L     G+   A ++ + M +   V+ + +I  +   G ++ A  VF  M ERD  TW
Sbjct: 249 --LGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTW 306

Query: 353 NLLIASYVQSG------------------------------------------------- 363
           + +I  Y + G                                                 
Sbjct: 307 SAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVR 366

Query: 364 ---QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
                D+ VAS ++ MY KC  +  AKQVFN   L+DVV+WN+++  Y+  G   EA  +
Sbjct: 367 SEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNV 426

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLT 479
           F+ M   G+ P+ +++  V+     +G++ E  ++F  M+    V+P +  +  L+  L 
Sbjct: 427 FHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLG 486

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           +    NEA+   ++M    ++P        L AC
Sbjct: 487 RADQVNEAMKLVEKM---PMEPDAIVWGALLGAC 517



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 12/226 (5%)

Query: 33  LRESDN-SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVY 91
           ++E DN ++ ++ K Y  +   L       EA+ L   M+     +       +L  CV 
Sbjct: 298 MKERDNGTWSAMIKVYERKGYEL-------EALGLFRRMQREGLALNFPSLISVLSVCVS 350

Query: 92  KRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWA 151
              +  G+Q+HA+++++   F ++ YV + L+  Y KC  L  A ++F R  +K+V  W 
Sbjct: 351 LASLDHGKQVHAQLVRSE--FDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWN 408

Query: 152 AIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV-LK 210
           ++I    + GL E+AL  F +M   GV PD+     VL AC   G V  G  +   +  K
Sbjct: 409 SMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCK 468

Query: 211 VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
              +  +   + L+D+ G+   + EA K+ + M +  + + W +++
Sbjct: 469 YQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALL 514


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 217/684 (31%), Positives = 355/684 (51%), Gaps = 56/684 (8%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           LD A  L   +  +NV SW  +I    R   + +AL  +  M  +G+ P +F L +VL A
Sbjct: 90  LDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSA 149

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           CGA+  +  GR  HG  +KVG D  +FV ++L+ MY KCG +E+A ++FDGM + N V++
Sbjct: 150 CGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSF 209

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN--------LDALDEGK 303
            +M+ G VQ G  ++A+R+F  M   GV    V+V+S+L + A         + A   G+
Sbjct: 210 TAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQ 269

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
             HA+ V  G   D  +G+S+I+ Y+K   +++A  VF  +     V+WN+LI  + Q+G
Sbjct: 270 CIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAG 329

Query: 364 -----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                            + + V  S+++    K   + +A+ +F+ I    V  WNTLL+
Sbjct: 330 SYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTLLS 389

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNG-QMNEAK------- 453
            Y       +   LF +MQ + + P+  +   ++     LG L  G Q++ A        
Sbjct: 390 GYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHN 449

Query: 454 ---------DMFLQMQSLGV---------QPNLITWTTLISGLTQNSCGNEAILFFQEML 495
                    DM+ +   +G+         + +++ W ++ISGL  +S   EA  FF++M 
Sbjct: 450 DMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMR 509

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
             G+ P+ ++    +++C  ++S+  GR IH  +++        + ++L+DMYAKCGN+ 
Sbjct: 510 GNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMD 569

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
            A+  FD   +K +  +N MI GYA +G   +A+ LF+ +      PD +TF  +L  CS
Sbjct: 570 DARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCS 629

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           H+GLV+E +  F  M S + + P  EH+ C+++ L R G L E   +I  MPC  D  + 
Sbjct: 630 HSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVW 689

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
             LL+ C   +  EL E  ++HL +L+P NP  YV LSN YA+ GR  + S VR +M  +
Sbjct: 690 EVLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGVRALMSSR 749

Query: 736 GLRKNPGCSWIQIGEELHVFVACD 759
           G+ K  G SWI   + +H F+  D
Sbjct: 750 GVVKGRGYSWIDHKDGVHAFMVAD 773



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/493 (26%), Positives = 238/493 (48%), Gaps = 69/493 (13%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           + GDL+ AR + D M  RNVV+WN++I    ++    EA+ ++  M  EG+ PT  ++ S
Sbjct: 86  RAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLAS 145

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
           +LSA   + ALD+G++ H +AV  G++ +  + ++++  Y+K G +EDA  +F  M   +
Sbjct: 146 VLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPN 205

Query: 349 IVTWNLLIASYVQSGQSD------------------VVVASSIVDMYAKCE------RID 384
            V++  ++   VQ+G  D                  V V+S +      C       R  
Sbjct: 206 EVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAF 265

Query: 385 NAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI--ISWN 437
              Q  +++I+R     D  + N+L+  Y    +  EA ++F  +      PNI  +SWN
Sbjct: 266 RLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSL------PNISTVSWN 319

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPN------------------------------ 467
            +I GF + G   +A ++   M+  G +PN                              
Sbjct: 320 ILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRP 379

Query: 468 -LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
            + TW TL+SG  Q     + +  F+ M    ++P  TT+   LS+C+ +  L  G  +H
Sbjct: 380 SVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVH 439

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
              +R  L     + + LVDMY+KCG I  A+ +F+    +++  +N+MISG A+H L  
Sbjct: 440 SASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNE 499

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
           EA   FK ++  G+ P   ++ +++N+C+    V +G ++   +  D     ++     +
Sbjct: 500 EAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKD-GYDQNVYVGSAL 558

Query: 647 VNLLSRCGNLDEA 659
           +++ ++CGN+D+A
Sbjct: 559 IDMYAKCGNMDDA 571



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 159/609 (26%), Positives = 272/609 (44%), Gaps = 98/609 (16%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++L++ ++  EA++L   M              +L  C     +  G++ H   +K G 
Sbjct: 112 IAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVG- 170

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               N +VE  L+  Y KC  ++ A RLF  +   N  S+ A++G   + G  + AL  F
Sbjct: 171 -LDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLF 229

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGF--------GRAVHGYVLKVGFDGCVFVASS 222
             M   GV  D   + +VL +C       F        G+ +H  +++ GF     V +S
Sbjct: 230 ARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNS 289

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LIDMY KC  ++EA KVFD +   + V+WN +I G+ Q G   +A+ V   M   G EP 
Sbjct: 290 LIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPN 349

Query: 283 RVSVTSILSASANL-DALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVV 340
            V+ +++L++     D L       A A+ + +   +V   +++++ Y +  L +D   +
Sbjct: 350 EVTYSNMLASCIKARDVLS------ARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVEL 403

Query: 341 FSRM----VERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAK 379
           F RM    V+ D  T  ++++S  + G                  +D+ VAS +VDMY+K
Sbjct: 404 FRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSK 463

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
           C +I  A+ +FN +  RDVV WN++++  A    + EA   F QM+  G+ P   S+ S+
Sbjct: 464 CGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASM 523

Query: 440 I---------------------LGFLRN--------------GQMNEAKDMFLQMQSLGV 464
           I                      G+ +N              G M++A+  F  M    V
Sbjct: 524 INSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCM----V 579

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD-------VA 517
             N++ W  +I G  QN  G +A+  F+ ML T  +P   T    L+ C+        +A
Sbjct: 580 TKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIA 639

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIV---TSLVDMYAKCGNIHQAKRVFDISPSKELP-VYN 573
              +  + +G          TP+    T L+D   + G + + + + D  P K+ P V+ 
Sbjct: 640 FFNSMESTYGI---------TPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWE 690

Query: 574 AMISGYAMH 582
            +++  A+H
Sbjct: 691 VLLAACAVH 699



 Score = 44.3 bits (103), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 68/219 (31%)

Query: 538 TPIVTSLVDMYA-------------------------------KCGNIHQAKRVFDISPS 566
           T ++  LV++Y+                               + G++  A+ + D  P 
Sbjct: 43  TFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPD 102

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS----------- 615
           + +  +N +I+  A    A EAL L++ + ++G+ P   T  ++L+AC            
Sbjct: 103 RNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRC 162

Query: 616 HAGLVNEGLE--LFV-----GMFS------------DHQVKPSMEHFGCVVNLLSRCGNL 656
           H   V  GL+  LFV     GM++            D    P+   F  ++  L + G++
Sbjct: 163 HGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSV 222

Query: 657 DEALRVILTM-----PCDPDAHIIGSLLSTCVKSNETEL 690
           D+ALR+   M       DP A  + S+L +C ++  +E 
Sbjct: 223 DDALRLFARMCRSGVRVDPVA--VSSVLGSCAQACASEF 259


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 222/720 (30%), Positives = 368/720 (51%), Gaps = 97/720 (13%)

Query: 157 NCRVGLSEKALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD- 214
           + R G   +AL  F+++    G       L  VLK CG++     G+ +HG  ++ G D 
Sbjct: 77  HARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDR 136

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
           G V V +SL+DMY K   + + RKVF+ M  RNVV W S++ GY+Q+G   + + +F+ M
Sbjct: 137 GDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRM 196

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
             EGV P  V+  S+LS  A+   +D G++ HA +V  G      + +S++N Y+K GL+
Sbjct: 197 RAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLV 256

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYV-----------------------QSGQSDVV--- 368
           E+A VVF  M  RD+V+WN L+A  V                       QS  + V+   
Sbjct: 257 EEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLC 316

Query: 369 --------------------------VASSIVDMYAKCERIDNAKQVFNSIIL---RDVV 399
                                     V ++++D Y+K  ++ NA  +F  +++   ++VV
Sbjct: 317 ANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIF--LLMSGSQNVV 374

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG----------------- 442
            W  ++      G    A+ LF +M+ +G++PN  ++++++                   
Sbjct: 375 SWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKTN 434

Query: 443 --------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
                         + +     EA  +F  +     Q ++++W+ +++   Q    + A 
Sbjct: 435 YECTSIVGTALLASYSKLCNTEEALSIFKMID----QKDVVSWSAMLTCYAQAGDSDGAT 490

Query: 489 LFFQEMLETGIKPSTTTITCALSAC-TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
             F +M   G+KP+  TI+  + AC +  A +  GR  H   I+H       + ++LV M
Sbjct: 491 NIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSM 550

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           YA+ G+I  A+ +F+    ++L  +N+M+SGYA HG + +AL +F+ ++ +GI+ D +TF
Sbjct: 551 YARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTF 610

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
            +++  C+HAGLV EG   F  M  D+ + P+MEH+ C+V+L SR G LDEA+ +I  M 
Sbjct: 611 LSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMS 670

Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
                 +  +LL  C      EL +  +E LL LEP +   YV LSN Y+A+G+W E  +
Sbjct: 671 FPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDE 730

Query: 728 VRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKVFC 787
           VR +M  K ++K  GCSWIQI  ++H F+A D+SHP +E+IYA L    M  +L  + +C
Sbjct: 731 VRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLR--AMTTKLKQEGYC 788


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 212/665 (31%), Positives = 335/665 (50%), Gaps = 86/665 (12%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+A+H  ++K     CV++A+SL+++Y KC  L EA+ VF+ +  ++VV+WN +I GY Q
Sbjct: 25  GKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQ 83

Query: 261 NGLN--EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           +G +     + +F  M  E   P   +   + +A++ L     G+ AHAVA+      D 
Sbjct: 84  HGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDV 143

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV------------------ 360
            +GSS++N Y K GL  +A  VF  M ER+ V+W  +I+ Y                   
Sbjct: 144 FVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRRE 203

Query: 361 QSGQSDVV----------------------------------VASSIVDMYAKCERIDNA 386
           + G+++ V                                  V +++V MYAKC  +D+A
Sbjct: 204 EEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDA 263

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----L 441
            Q F +   ++ + W+ ++  YA  G S +A +LF  M L GI P+  ++  VI     L
Sbjct: 264 LQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDL 323

Query: 442 GFLRNGQ-----------------MNEAKDMFLQMQSL-----GV----QPNLITWTTLI 475
           G    G+                 M    DM+ +  S+     G     +P+++ WT++I
Sbjct: 324 GAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMI 383

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
            G  QN    +A+  +  M   GI P+  T+   L AC+ +A+L  G+ IH   +++   
Sbjct: 384 GGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFG 443

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           L  PI ++L  MYAKCG +     VF   P++++  +NAMISG + +G   EAL LF+ +
Sbjct: 444 LEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEM 503

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           Q +G  PD +TF NIL+ACSH GLV  G   F  MF +  + P +EH+ C+V++LSR G 
Sbjct: 504 QLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGK 563

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           L EA+    +   D    +   +L  C      EL  Y  E L++L       YV LS+ 
Sbjct: 564 LKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSI 623

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           Y+A GRW +V +VR +MK +G+ K PGCSWI++   +HVFV  D+ HP+  +I+  L  L
Sbjct: 624 YSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQL 683

Query: 776 GMHVR 780
              ++
Sbjct: 684 SKQMK 688



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 166/560 (29%), Positives = 255/560 (45%), Gaps = 101/560 (18%)

Query: 90  VYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFS 149
            + R +  G+ +HA+I+K+        Y+   LV  YAKC  L  A  +F R++ K+V S
Sbjct: 17  THNRSLQKGKALHAQIIKSSSSCV---YIANSLVNLYAKCQRLREAKFVFERIQNKDVVS 73

Query: 150 WAAIIGLNCRVGLSEKALIG--FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGY 207
           W  II    + G S  + +   F  M+ +  +P+      V  A   L     GR  H  
Sbjct: 74  WNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAV 133

Query: 208 VLKVGFDGC--VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
            +K+  D C  VFV SSL++MY K G   EARKVFD M  RN V+W +MI GY    L  
Sbjct: 134 AIKM--DSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAA 191

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           EA+ +F  M  E         TS+LSA    + ++ GKQ H +AV NG+     +G++++
Sbjct: 192 EALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALV 251

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------------- 366
             Y+K G L+DA   F    +++ +TW+ +I  Y QSG SD                   
Sbjct: 252 TMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEF 311

Query: 367 ---------------------------------VVVASSIVDMYAKCERIDNAKQVFNSI 393
                                            + V +++VDMYAKC  I +A++ F+ +
Sbjct: 312 TFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYL 371

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQ 448
              D+VLW +++  Y   G + +A  L+ +M++EGI PN ++  SV+     L  L  G+
Sbjct: 372 QEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGK 431

Query: 449 MNEA---------------------------KDMFLQMQSLGVQPNLITWTTLISGLTQN 481
              A                           KD  L  + +  + ++I+W  +ISGL+QN
Sbjct: 432 QIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPAR-DVISWNAMISGLSQN 490

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL-IRHDLCLPTPI 540
            CG EA+  F+EM   G KP   T    LSAC+ +  +  G    GY  +  D     P 
Sbjct: 491 GCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERG---WGYFRMMFDEFGMDPR 547

Query: 541 V---TSLVDMYAKCGNIHQA 557
           V     +VD+ ++ G + +A
Sbjct: 548 VEHYACMVDILSRAGKLKEA 567



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 217/446 (48%), Gaps = 52/446 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  + +K   EA+ L   M+         ++  +L        +  G+QIH   
Sbjct: 176 SWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIA 235

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +KNG     +  V   LV  YAKC +LD A + F     KN  +W+A+I    + G S+K
Sbjct: 236 VKNGLLSIVS--VGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDK 293

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  F  M   G+ P  F    V+ AC  LG    G+ VH Y+LK+GF+  ++V ++L+D
Sbjct: 294 ALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVD 353

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY KC  + +ARK FD +   ++V W SMI GYVQNG NE+A+ ++  M +EG+ P  ++
Sbjct: 354 MYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELT 413

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           + S+L A ++L AL++GKQ HA  V  G  L+  +GS++   Y+K G L+D  +VF RM 
Sbjct: 414 MASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMP 473

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
            RD+++WN +I+   Q+G                C +                       
Sbjct: 474 ARDVISWNAMISGLSQNG----------------CGK----------------------- 494

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGV 464
                     EA  LF +MQLEG  P+ +++ +++      G +      F  M    G+
Sbjct: 495 ----------EALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGM 544

Query: 465 QPNLITWTTLISGLTQNSCGNEAILF 490
            P +  +  ++  L++     EAI F
Sbjct: 545 DPRVEHYACMVDILSRAGKLKEAIEF 570



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 184/382 (48%), Gaps = 43/382 (11%)

Query: 347 RDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
           R +     L A  ++S  S V +A+S+V++YAKC+R+  AK VF  I  +DVV WN ++ 
Sbjct: 20  RSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIIN 79

Query: 407 AYADLGRSGEAS--RLFYQMQLEGISPNIISWNSVIL----------GFLRNG---QMNE 451
            Y+  G SG +    LF +M+ E  +PN  ++  V            G L +    +M+ 
Sbjct: 80  GYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDS 139

Query: 452 AKDMFLQMQSL------GVQP------------NLITWTTLISGLTQNSCGNEAILFFQE 493
            +D+F+    +      G+ P            N ++W T+ISG        EA+  F+ 
Sbjct: 140 CRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRL 199

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M       +    T  LSA T    + NG+ IH   +++ L     +  +LV MYAKCG+
Sbjct: 200 MRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGS 259

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +  A + F+ S  K    ++AMI+GYA  G + +AL LF ++   GI P   TF  ++NA
Sbjct: 260 LDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINA 319

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEH----FGCVVNLLSRCGNLDEALRVILTMPCD 669
           CS  G   EG ++      D+ +K   E        +V++ ++C ++ +A +    +  +
Sbjct: 320 CSDLGAAWEGKQVH-----DYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQ-E 373

Query: 670 PDAHIIGSLLSTCVKSNETELA 691
           PD  +  S++   V++ E E A
Sbjct: 374 PDIVLWTSMIGGYVQNGENEDA 395



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 165/334 (49%), Gaps = 21/334 (6%)

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
           RS +  +  +   ++  S  +   NS++  + +  ++ EAK +F ++Q+     ++++W 
Sbjct: 20  RSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQN----KDVVSWN 75

Query: 473 TLISGLTQN--SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
            +I+G +Q+  S  +  +  FQ M      P+  T     +A + +     GR  H   I
Sbjct: 76  CIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAI 135

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           + D C    + +SL++MY K G   +A++VFD  P +    +  MISGYA   LA EAL 
Sbjct: 136 KMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALG 195

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV-----GMFSDHQVKPSMEHFGC 645
           LF+ ++++    +   FT++L+A +   LVN G ++       G+ S   V  ++     
Sbjct: 196 LFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNAL----- 250

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE--LAEYISEHLLQLEP 703
            V + ++CG+LD+AL+   T   D ++    ++++   +S +++  L  + S HL  + P
Sbjct: 251 -VTMYAKCGSLDDALQTFET-SSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRP 308

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
            +   +V + NA +  G   E  QV D + + G 
Sbjct: 309 -SEFTFVGVINACSDLGAAWEGKQVHDYLLKLGF 341



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 14/174 (8%)

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           PS  +   AL   T   SL+ G+A+H  +I+        I  SLV++YAKC  + +AK V
Sbjct: 4   PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKFV 62

Query: 561 FDISPSKELPVYNAMISGYAMHGL--AVEALALFKNLQQKGIDPDSITFTNILNACS--- 615
           F+   +K++  +N +I+GY+ HG   +   + LF+ ++ +   P++ TF  +  A S   
Sbjct: 63  FERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLV 122

Query: 616 --HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
               G +   + + +    D  V  S+      +N+  + G   EA +V  TMP
Sbjct: 123 DAAGGRLAHAVAIKMDSCRDVFVGSSL------MNMYCKAGLTPEARKVFDTMP 170


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 248/841 (29%), Positives = 405/841 (48%), Gaps = 114/841 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGC--VYKRDMYTGQQIHARILKN 108
           IS  ++ +   EA +L  +M    F      +G +++ C    +  +  G QIH  + K 
Sbjct: 146 ISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKT 205

Query: 109 GDFFARNEYVETKLVVFYAKCDAL-DVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
              +  +      L+  Y     + D A R F  +  +N+ S  ++I + C+ G +  A 
Sbjct: 206 Q--YVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAF 263

Query: 168 IGFVEMQE----DGVSPDNFVLPNVLKACGALGWVGFG--RAVHGYVLKVGFDGCVFVAS 221
             F  MQ+    DG+ P+ +   +++ A  +L   G      +   V K GF   ++V S
Sbjct: 264 DIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGS 323

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           +L+  + K G +  A+ +F  M  RNVV+ N +I+G V+    EEA+ +F EM  + VE 
Sbjct: 324 ALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMK-DSVEL 382

Query: 282 TRVSVTSILSASANLDALDEGK----QAHAVAVINGM-ELDNVLGSSIINFYSKVGLLED 336
              S   IL+A      L+ GK    + HA  + +G+      +G+ +IN Y+K G + D
Sbjct: 383 NPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAIND 442

Query: 337 AEVVFSRMVERDIVTWNLLIAS-------------------------------------- 358
           A VVF  M  +D VTWN +I                                        
Sbjct: 443 ACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCAS 502

Query: 359 --YVQSGQS------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
             ++  G+             DV V+++++ +Y +C  +   ++ F+ ++  D V WN+L
Sbjct: 503 LGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSL 562

Query: 405 LAAYADLGRSG-EASRLFYQMQLEGISPNIISW--------------------------- 436
           + A AD   S  EA   F  M   G  PN +++                           
Sbjct: 563 IGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRN 622

Query: 437 --------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
                   N+++  + + G M   +++F +M     + + ++W ++ISG   N    +A+
Sbjct: 623 VAADTAIENALLACYGKCGDMGYCENIFSRMSD---RQDEVSWNSMISGYIHNELLPKAM 679

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV--TSLVD 546
                M++ G +    T    LSAC  VA+L  G  +HG  +R   CL + IV  ++LVD
Sbjct: 680 DMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVR--ACLESDIVIGSALVD 737

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MYAKCG I  A R F++ P++ L  +N+MISGYA HG   ++L LF  ++ +G  PD +T
Sbjct: 738 MYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVT 797

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           F  +L+ACSHAGLVNEG   F  M   + + P MEHF C+V+LL R G L++    +  M
Sbjct: 798 FVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQM 857

Query: 667 PCDPDAHIIGSLLSTCVKSN--ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
           P  P+  I  ++L  C ++N   T L    +E LL++EP N  NY+ LSN YA+ G+W++
Sbjct: 858 PVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDD 917

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSK 784
           V++ R  M++  ++K  GCSW+ + + +HVFVA D+SHP+ + IY  L  L   +RL   
Sbjct: 918 VAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGY 977

Query: 785 V 785
           +
Sbjct: 978 I 978



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 140/534 (26%), Positives = 257/534 (48%), Gaps = 46/534 (8%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +H  + K GF   +F+ ++LI++Y + GDL   RKVFD M  RN+V+W+ +I GY +N +
Sbjct: 95  LHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRM 154

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD--ALDEGKQAHAV----AVINGMELD 317
             EA  +F +M  +G  P   +  S++ A        L  G Q H +      +N +   
Sbjct: 155 PNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTAS 214

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
           NVL   I  + + +G+++ A   F  +  R++V+ N +I+ Y Q G      A S  D++
Sbjct: 215 NVL---ISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGD-----AVSAFDIF 266

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA--SRLFYQMQLEGISPNIIS 435
           +  +     K+V    +  +   + +L++A   L  SG     +L  +++  G   ++  
Sbjct: 267 STMQ-----KEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYV 321

Query: 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
            ++++ GF + G +  AK++F +M       N+++   LI GL +   G EA+  F EM 
Sbjct: 322 GSALVSGFAKAGSIGYAKNIFQKMS----YRNVVSLNGLIIGLVRQKRGEEAVELFMEMK 377

Query: 496 ET-GIKPSTTTITCALSACTDVASLRNGR----AIHGYLIRHDLC-LPTPIVTSLVDMYA 549
           ++  + P++  I   L+A  +   L NG+     +H +LIR  L      I   L++MYA
Sbjct: 378 DSVELNPNSYMII--LTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYA 435

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           KCG I+ A  VF +  +K+   +N+MI+G   +   +EA+  F+ +++  + P + T  +
Sbjct: 436 KCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMIS 495

Query: 610 ILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
            L++C+  G ++ G +L      +G+  D  V  ++      + L   CG + E  +   
Sbjct: 496 ALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNAL------LALYGECGYVKECQKAFS 549

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
            M  D D H+  + L   +  +E  + E +   L+ +      N V      AA
Sbjct: 550 LM-LDYD-HVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAA 601



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 138/564 (24%), Positives = 254/564 (45%), Gaps = 76/564 (13%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
            +++H ++ KNG  F  + ++   L+  YA+   L    ++F  + ++N+ SW+ +I   
Sbjct: 92  AEELHLQLFKNG--FVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG--FGRAVHGYVLKVGFDG 215
            R  +  +A   F +M  DG  P+++   +V++AC   G  G  FG  +HG + K  +  
Sbjct: 150 TRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVN 209

Query: 216 CVFVASSLIDMYGKC-GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
            V  ++ LI MYG   G ++ AR+ FD +  RN+V+ NSMI  Y Q G    A  +F  M
Sbjct: 210 DVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269

Query: 275 TLE----GVEPTRVSVTSILSASANL--DALDEGKQAHAVAVINGMELDNVLGSSIINFY 328
             E    G++P   +  S++SA+ +L    L   +Q       +G   D  +GS++++ +
Sbjct: 270 QKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGF 329

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA----------------SS 372
           +K G +  A+ +F +M  R++V+ N LI   V+  + +  V                   
Sbjct: 330 AKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMI 389

Query: 373 IVDMYAKCERIDNAKQ---------VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
           I+  + +   ++N K+         + + ++   + + N L+  YA  G   +A  +F  
Sbjct: 390 ILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRL 449

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           M     + + ++WNS+I G  +N Q  EA   F                           
Sbjct: 450 MD----NKDSVTWNSMITGLDQNKQFLEAVKTF--------------------------- 478

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
                   QEM  T + PS  T+  ALS+C  +  +  G  +H   ++  L L   +  +
Sbjct: 479 --------QEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNA 530

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA-MHGLAVEALALFKNLQQKGIDP 602
           L+ +Y +CG + + ++ F +    +   +N++I   A      +EA+  F  + + G DP
Sbjct: 531 LLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDP 590

Query: 603 DSITFTNILNACSHAGLVNEGLEL 626
           + +TF  IL A S   L   G ++
Sbjct: 591 NRVTFITILAAVSSLSLHELGKQI 614



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 52/99 (52%)

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
           ++   +H  L ++       +  +L+++YA+ G++   ++VFD  P + L  ++ +ISGY
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
             + +  EA  LF+ +   G  P+   F +++ AC   G
Sbjct: 150 TRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECG 188


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 215/694 (30%), Positives = 362/694 (52%), Gaps = 72/694 (10%)

Query: 112 FARNEYVETKLVVFYAKCD--ALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
           F R  Y  ++L+ F        +D   R+F  +   N F W  +I    +      A   
Sbjct: 6   FIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTL 65

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           +  M  + +  DN+  P +++AC         + VH +VLK+GFD  V+V ++LI+ +  
Sbjct: 66  YKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSV 125

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           C ++ +A +VF+     + V+WNS++ GY++ G  EEA  ++++M      P R  + S 
Sbjct: 126 CSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM------PERSIIAS- 178

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
                                           +S+I  +   GL+ +A  +F  M+E+D+
Sbjct: 179 --------------------------------NSMIVLFGMRGLVVEACKLFDEMLEKDM 206

Query: 350 VTWNLLIASYVQSGQS-----------------DVVVASSIVDMYAKCERIDNAKQVFNS 392
           VTW+ LIA + Q+                    D VVA S +   A    + N  ++ +S
Sbjct: 207 VTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANL-LVVNMGKLIHS 265

Query: 393 IILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
           + L+      + L N L+  Y+  G    A +LF +  L     ++ISWNS+I G+L+  
Sbjct: 266 LSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYL----LDLISWNSMISGYLKCN 321

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
            ++ AK +F  M     + ++++W+++ISG  QN   +E +  FQEM  +G KP  TT+ 
Sbjct: 322 LVDNAKAIFDSMP----EKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLV 377

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
             +SAC  +A+L  G+ +H Y+ R+ L +   + T+L+DMY KCG +  A  VF     K
Sbjct: 378 SVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEK 437

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
            +  +NA+I G AM+GL   +L +F N+++  + P+ ITF  +L AC H GLV+EG   F
Sbjct: 438 GISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHF 497

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             M  DH+++P+++H+GC+V+LL R G L EA  ++  MP  PD    G+LL  C K  +
Sbjct: 498 YSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGD 557

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
           +E+   +   L++L+PD+ G +V LSN YA+ G+W++V ++R +M +  + K PGCS I+
Sbjct: 558 SEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIE 617

Query: 748 IGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
               +H F+A D++HP  + I   L  + M ++L
Sbjct: 618 ANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKL 651



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 147/590 (24%), Positives = 256/590 (43%), Gaps = 98/590 (16%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  L+Q C  +R  +  +Q+H  +LK G  F  + YV   L+  ++ C  +  A R+F  
Sbjct: 81  YPLLIQACSIRRSEWEAKQVHNHVLKLG--FDSDVYVRNTLINCFSVCSNMTDACRVFNE 138

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
             V +  SW +I+     +G  E+A   + +M E  +   N                   
Sbjct: 139 SSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASN------------------- 179

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
                               S+I ++G  G + EA K+FD M+ +++V W+++I  + QN
Sbjct: 180 --------------------SMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQN 219

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
            + EEAIR F  M   GV    V   S LSA ANL  ++ GK  H++++  G E    L 
Sbjct: 220 EMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQ 279

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +++I  YSK G +  A  +F      D+++WN +I+ Y+                  KC 
Sbjct: 280 NALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYL------------------KCN 321

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +DNAK +F+S+  +DVV W+++++ YA      E   LF +MQ+ G  P+  +  SVI 
Sbjct: 322 LVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVIS 381

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLI-------------------------------T 470
              R   + + K +   ++  G+  N+I                               T
Sbjct: 382 ACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIST 441

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W  LI GL  N     ++  F  M +  + P+  T    L AC  +  +  G+  H Y +
Sbjct: 442 WNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQH-HFYSM 500

Query: 531 RHDLCLPTPI--VTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVE 587
            HD  +   +     +VD+  + G + +A+ + +  P + ++  + A++     HG +  
Sbjct: 501 IHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEM 560

Query: 588 ALALFKNLQQKGIDPDSITFTNIL-NACSHAGLVNEGLELFVGMFSDHQV 636
              + + L +  + PD   F  +L N  +  G  ++ LE+  GM + H+V
Sbjct: 561 GRRVGRKLIE--LQPDHDGFHVLLSNIYASKGKWDDVLEI-RGMMTKHRV 607



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 159/299 (53%), Gaps = 10/299 (3%)

Query: 74  NFQIGPEIYGELLQGCVYKRDMYT--GQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131
           + +IG E Y  L    +Y   MY+  G  + AR L + + +  +      ++  Y KC+ 
Sbjct: 267 SLKIGTESYINLQNALIY---MYSKCGDIMVARKLFD-EAYLLDLISWNSMISGYLKCNL 322

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           +D A  +F  +  K+V SW+++I    +  L ++ L  F EMQ  G  PD   L +V+ A
Sbjct: 323 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 382

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C  L  +  G+ VH Y+ + G    V + ++LIDMY KCG +E A +VF GMI + +  W
Sbjct: 383 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTW 442

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N++I+G   NGL E ++ +F  M    V P  ++   +L A  ++  +DEG Q H  ++I
Sbjct: 443 NALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEG-QHHFYSMI 501

Query: 312 NGMELD-NVLG-SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDV 367
           +  ++  NV     +++   + G L++AE + +RM +  D+ TW  L+ +  + G S++
Sbjct: 502 HDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEM 560



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 16/233 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++     E + L  EM+   F+        ++  C     +  G+ +HA I
Sbjct: 340 SWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYI 399

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            +NG     N  + T L+  Y KC  ++ A  +F  +  K + +W A+I      GL E 
Sbjct: 400 KRNG--LTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVES 457

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR-----AVHGYVLK--VGFDGCVF 218
           +L  F  M++  V+P+      VL AC  +G V  G+      +H + ++  V   GC  
Sbjct: 458 SLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGC-- 515

Query: 219 VASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRV 270
               ++D+ G+ G L+EA ++ + M +  +V  W +++    ++G +E   RV
Sbjct: 516 ----MVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRV 564


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 211/667 (31%), Positives = 332/667 (49%), Gaps = 86/667 (12%)

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H   +K G    ++ A+++I  Y KCG++  A K+F     R+ V+WN+MI G+V  G  
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           E A+     M   G      S  SIL   A +  ++ G+Q H++ V  G E +   GS++
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSAL 141

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------------- 364
           ++ Y+K   +EDA  VF  +  R+ VTWN LI+ Y Q G                     
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDD 201

Query: 365 --------------------------------SDVVVASSIVDMYAKCERIDNAKQVFNS 392
                                           SD  V ++I+  Y++C  I++A++VF+ 
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDG 261

Query: 393 II-LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
            I  RD+V WN++LAAY    +  EA +LF +MQ+ G  P+I ++ SVI          +
Sbjct: 262 AIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQ 321

Query: 452 AKD----------------------MFLQMQSLGVQPNL-----------ITWTTLISGL 478
            K                       M+L+  S  +   L           ++W ++++G 
Sbjct: 322 GKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGF 381

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
           +Q+    +A+ FF+ M    +       +  L +C+D+A+L+ G+ +H  +++       
Sbjct: 382 SQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNG 441

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            + +SL+ MY+KCG I  A++ FD +P      +N++I GYA HG    AL LF  ++ +
Sbjct: 442 FVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDR 501

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
            +  D ITF  +L ACSH GLV EG      M SD+ + P MEH+ C+++LL R G LDE
Sbjct: 502 RVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDE 561

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           A  +I  MP +PDA +  +LL  C    + ELA  ++ HLL+LEP+    YV LS+ +  
Sbjct: 562 AKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGH 621

Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMH 778
             RWNE + ++ +MKE+G++K PG SWI++  E+  F A DRSHP  EEIY  L  L   
Sbjct: 622 LRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLGELMEE 681

Query: 779 VRLVSKV 785
           +R +  V
Sbjct: 682 IRRLDYV 688



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 131/525 (24%), Positives = 233/525 (44%), Gaps = 61/525 (11%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           A++ L  MK   F +    +G +L+G      +  GQQ+H+ ++K G  +  N +  + L
Sbjct: 84  ALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMG--YEGNVFAGSAL 141

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  YAKC+ ++ A  +F  + ++N  +W A+I    +VG    A      M+ +GV  D+
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDD 201

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
                +L              VH  ++K G      V +++I  Y +CG +E+A +VFDG
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDG 261

Query: 243 MI-ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            I  R++V WNSM+  Y+ N   EEA ++F EM + G EP   + TS++SA+       +
Sbjct: 262 AIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQ 321

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFY--SKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
           GK  H + +  G+E    + +S+I  Y  S    +++A  +F  +  +D V+WN ++  +
Sbjct: 322 GKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGF 381

Query: 360 VQSGQSD-------------VVV------------------------------------- 369
            QSG S+             VV+                                     
Sbjct: 382 SQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNG 441

Query: 370 --ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
             ASS++ MY+KC  I++A++ F++      + WN+L+  YA  GR   A  LF+ M+  
Sbjct: 442 FVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDR 501

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNE 486
            +  + I++ +V+      G + E       M+S  G+ P +  +  +I  L +    +E
Sbjct: 502 RVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDE 561

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           A    + M     +P        L AC     +     +  +L+ 
Sbjct: 562 AKALIEAM---PFEPDAMVWKTLLGACRTCGDIELASQVASHLLE 603



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 112/471 (23%), Positives = 205/471 (43%), Gaps = 101/471 (21%)

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           + ++  AL      H +A+ +G        ++II+ Y+K G +  A  +F    +RD V+
Sbjct: 8   SQSSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVS 67

Query: 352 WNLLIASYVQSG------------------------------------------------ 363
           WN +IA +V  G                                                
Sbjct: 68  WNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMV 127

Query: 364 ----QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
               + +V   S+++DMYAKCER+++A +VF SI +R+ V WN L++ YA +G  G A  
Sbjct: 128 KMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFW 187

Query: 420 LFYQMQLEGI-----------------------------------SPNIISWNSVILGFL 444
           L   M+LEG+                                   + +    N++I  + 
Sbjct: 188 LLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYS 247

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
             G + +A+ +F          +L+TW ++++    N+   EA   F EM   G +P   
Sbjct: 248 ECGSIEDAERVF---DGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIY 304

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK--CGNIHQAKRVFD 562
           T T  +SA  + +    G+++HG +I+  L    PI  SL+ MY K    ++ +A  +F+
Sbjct: 305 TYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFE 364

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
              +K+   +N++++G++  GL+ +AL  F+N++ + +  D   F+ +L +CS    +  
Sbjct: 365 SLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQL 424

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLL----SRCGNLDEALRVILTMPCD 669
           G ++ V +     +K   E  G V + L    S+CG +++A +     P D
Sbjct: 425 GQQVHVLV-----LKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKD 470



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 171/354 (48%), Gaps = 20/354 (5%)

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG-DFFARNEY 117
           Q  EA  L  EM+   F+     Y  ++           G+ +H  ++K G +F      
Sbjct: 283 QEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVP--- 339

Query: 118 VETKLVVFYAK--CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
           +   L+  Y K    ++D A  +F  L  K+  SW +I+    + GLSE AL  F  M+ 
Sbjct: 340 ISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRS 399

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
             V  D++    VL++C  L  +  G+ VH  VLK GF+   FVASSLI MY KCG +E+
Sbjct: 400 QYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIED 459

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           ARK FD     + +AWNS+I GY Q+G  + A+ +F+ M    V+   ++  ++L+A ++
Sbjct: 460 ARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSH 519

Query: 296 LDALDEGKQAHAVAVINGMELDNVLG------SSIINFYSKVGLLEDAEVVFSRM-VERD 348
           +  ++EG      + +  ME D  +       + +I+   + G L++A+ +   M  E D
Sbjct: 520 IGLVEEG-----WSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPD 574

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            + W  L+ +    G  D+ +AS +     + E  ++   V  S +   +  WN
Sbjct: 575 AMVWKTLLGACRTCG--DIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWN 626



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 110/241 (45%), Gaps = 20/241 (8%)

Query: 27  QTHLTKLRESDNSYESL----YKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY 82
           ++H   + E+ N +ESL    + S+   ++  S+     +A+     M+ +   I    +
Sbjct: 350 KSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAF 409

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
             +L+ C     +  GQQ+H  +LK+G  F  N +V + L+  Y+KC  ++ A + F   
Sbjct: 410 SAVLRSCSDLATLQLGQQVHVLVLKSG--FEPNGFVASSLIFMYSKCGVIEDARKSFDAT 467

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
              +  +W ++I    + G  + AL  F  M++  V  D+     VL AC  +G V  G 
Sbjct: 468 PKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGW 527

Query: 203 AV-------HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSM 254
           +        +G   ++    C      +ID+ G+ G L+EA+ + + M    + + W ++
Sbjct: 528 SFLKSMESDYGIPPRMEHYAC------MIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTL 581

Query: 255 I 255
           +
Sbjct: 582 L 582


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 216/717 (30%), Positives = 363/717 (50%), Gaps = 84/717 (11%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           QQIHAR + +G  F +N  + +KL+  YA    L+ + ++FC +   N+  + AI+    
Sbjct: 44  QQIHARFILHG--FHQNPTLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAILRNLT 101

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           R G SE+ L+ + +M    + PD    P VL++C +   VGFGR +HGY++K+GFD    
Sbjct: 102 RYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDV 161

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           VA++L +MY +C + E A ++FD    +++   +S+     QN   E   RVF  M  E 
Sbjct: 162 VATALAEMYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQ 221

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           + P   +  ++L   A L+++   K  H +A+++ +                        
Sbjct: 222 LVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKL------------------------ 257

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
                                      D++V ++++ +Y+K   + +A+++F+ +  +D 
Sbjct: 258 -------------------------SGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDR 292

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF--------------- 443
           V+WN ++AAYA  G+  E   LF  M   GI  ++ +   VI                  
Sbjct: 293 VVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAH 352

Query: 444 -LRNGQ------MNEAKDMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEA 487
            LRNG        N   DM+ + + L             ++I+W+ +I G  +N     A
Sbjct: 353 ILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTA 412

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
           +  F +M   GI+     +   L A   + +L N + +HGY ++  L     + T+L+  
Sbjct: 413 LSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLIT 472

Query: 548 YAKCGNIHQAKRVFDISP--SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           YAKCG+I  A+R+F+      K+L ++N+MIS +A HG   +   L+  ++     PD +
Sbjct: 473 YAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQV 532

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           TF  +L AC ++GLV +G E F  M   +  +PS EH+ C+VNLL R G + EA  ++  
Sbjct: 533 TFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKN 592

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MP  PDA + G LLS C     ++LAE+ +E L+ +EP N GNY+ LSN YAA+G+W+ V
Sbjct: 593 MPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGV 652

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
           +++R  ++ KGL+K PGCSW++I   +  F   D++HP+  +IY  L  L + ++ V
Sbjct: 653 AKMRSFLRNKGLKKIPGCSWLEINGHVTEFRVADQTHPRAGDIYTILGNLELEIKEV 709



 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 226/481 (46%), Gaps = 28/481 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           + +L++  +    + +  +M  ++     E Y  +L+ C    ++  G+ IH  ++K G 
Sbjct: 97  LRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGF 156

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
           D F   + V T L   Y +C   + A +LF +  VK++   +++     +    E     
Sbjct: 157 DLF---DVVATALAEMYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRV 213

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  M  + + PD+F   N+L+    L  +   + VH   +     G + V ++++ +Y K
Sbjct: 214 FGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSK 273

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
              L +ARK+FD M  ++ V WN MI  Y + G   E + +F  M   G+     +   +
Sbjct: 274 LRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPV 333

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           +S+ A L  +D GKQ HA  + NG +    + +S+I+ Y +  +L+ A  +F+ M ++ +
Sbjct: 334 ISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSV 393

Query: 350 VTWNLLIASYVQSGQS-----------------DVVVASSIVDMYAKCERIDNAKQVFN- 391
           ++W+ +I  YV++GQS                 D V+  +I+  +     ++N K +   
Sbjct: 394 ISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGY 453

Query: 392 --SIILRDVVLWNT-LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
              + L  +   NT LL  YA  G    A RLF + +++    ++I WNS+I     +G 
Sbjct: 454 SMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKID--DKDLIMWNSMISAHANHGD 511

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTIT 507
            ++   ++ +M+    +P+ +T+  L++    +    +   FF+EM E+ G +PS     
Sbjct: 512 WSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYA 571

Query: 508 C 508
           C
Sbjct: 572 C 572



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 139/265 (52%), Gaps = 6/265 (2%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+Q HA IL+NG        V   L+  Y +C  LD A ++F  +  K+V SW+A+I   
Sbjct: 346 GKQTHAHILRNGS--DSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGY 403

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            + G S  AL  F +M+ DG+  D  ++ N+L A   +G +   + +HGY +K+G     
Sbjct: 404 VKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLP 463

Query: 218 FVASSLIDMYGKCGDLEEARKVF--DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            + ++L+  Y KCG +E A+++F  + +  ++++ WNSMI  +  +G   +  +++  M 
Sbjct: 464 SLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMK 523

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQ-AHAVAVINGMELDNVLGSSIINFYSKVGLL 334
               +P +V+   +L+A  N   +++GK+    +    G +      + ++N   + GL+
Sbjct: 524 CSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLI 583

Query: 335 EDA-EVVFSRMVERDIVTWNLLIAS 358
            +A E+V +  ++ D   W  L+++
Sbjct: 584 SEAGELVKNMPIKPDARVWGPLLSA 608



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 14/134 (10%)

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           T++   S C  +  L+    IH   I H       + + L+D YA  G ++ + +VF   
Sbjct: 29  TLSLLFSRCNSIQHLQQ---IHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQVFCSV 85

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS--------- 615
               L ++NA++     +G +   L +++ +  K + PD  T+  +L +CS         
Sbjct: 86  IDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGR 145

Query: 616 --HAGLVNEGLELF 627
             H  LV  G +LF
Sbjct: 146 TIHGYLVKLGFDLF 159


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 227/753 (30%), Positives = 379/753 (50%), Gaps = 69/753 (9%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
            LQ  +    +  G    AR L   D    N      ++  Y K   L  A  LF R+  
Sbjct: 40  FLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPA 99

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRA 203
           ++V SW  ++    +      +L  FV M   G  SP+ F     +K+CGALG       
Sbjct: 100 RDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQ 159

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF----------------------- 240
           + G V K G      VA++L+DM+ +CG ++ A ++F                       
Sbjct: 160 LLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYG 219

Query: 241 --------DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
                   D M  R+VV+WN M+    Q+G   EA+ +  +M  +GV     + TS L+A
Sbjct: 220 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTA 279

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A L +L  GKQ HA  + N   +D  + S+++  Y+K G  ++A+ VF+ + +R+ V W
Sbjct: 280 CARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAW 339

Query: 353 NLLIASYVQSGQ--------SDVVVASSIVDMYAK-------CERIDNA-KQVFNSIILR 396
            +LIA ++Q G         + +      +D +A        C R+D    +  +S+ L+
Sbjct: 340 TVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLK 399

Query: 397 D-----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
                 VV+ N+L++ YA       A  +F  M       +I+SW S+I    + G + +
Sbjct: 400 SGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMN----EKDIVSWTSMITAHSQVGNIAK 455

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTITCAL 510
           A++ F  M +     N+ITW  ++    Q+    + +  +  ML E  ++P   T     
Sbjct: 456 AREFFDGMST----KNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLF 511

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
             C D+ + + G  I G  ++  L L T +  +++ MY+KCG I +A++VFD    K++ 
Sbjct: 512 KGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIV 571

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
            +NAMI+GY+ HG+  +A+ +F ++ ++G  PD I++  +L+ CSH+GLV EG   F  M
Sbjct: 572 SWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMM 631

Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETEL 690
              H + P +EHF C+V+LL R G+L EA  +I  MP  P A + G+LLS C      EL
Sbjct: 632 KRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNEL 691

Query: 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGE 750
           AE  ++H+ +L+  + G+Y+ ++  YA +G+ ++ +Q+R +M++KG++KNPG SW+++  
Sbjct: 692 AELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNN 751

Query: 751 ELHVFVACDRSHP-------KTEEIYATLALLG 776
           ++HVF A D SHP       K +E+   +A LG
Sbjct: 752 KVHVFKADDVSHPQVIAIRKKLDELMEKIARLG 784



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 219/469 (46%), Gaps = 60/469 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +S+LS+  ++REA+D++ +M+ +  ++    Y   L  C     +  G+Q+HA++
Sbjct: 237 SWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQV 296

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++N      + YV + LV  YAKC     A  +F  L  +N  +W  +I    + G   +
Sbjct: 297 IRN--LPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTE 354

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           ++  F +M+ + ++ D F L  ++  C +   +  GR +H   LK G    V V++SLI 
Sbjct: 355 SVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLIS 414

Query: 226 MYGKC-------------------------------GDLEEARKVFDGMIARNVVAWNSM 254
           MY KC                               G++ +AR+ FDGM  +NV+ WN+M
Sbjct: 415 MYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAM 474

Query: 255 IVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           +  Y+Q+G  E+ +R++  M  E  V P  V+  ++    A+L A   G Q     V  G
Sbjct: 475 LGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVG 534

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373
           + LD  + +++I  YSK G + +A  VF  +  +DIV+WN +I  Y Q G          
Sbjct: 535 LILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMG-------- 586

Query: 374 VDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEG 428
                       A ++F+ I+ R    D + +  +L+  +  G   E    F  M+ +  
Sbjct: 587 ----------KQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHN 636

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
           ISP +  ++ ++    R G + EAKD+  +M    ++P    W  L+S 
Sbjct: 637 ISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMP---MKPTAEVWGALLSA 682



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 133/563 (23%), Positives = 237/563 (42%), Gaps = 91/563 (16%)

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
             + L++CGA G +   RA+HG ++ VG    VF+ ++L+  Y  CG L +AR++    I
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDI 66

Query: 245 AR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
           A  NV+  N M+ GYV+ G   +A+ +F  M    V      ++    +   L +L+   
Sbjct: 67  AHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFV 126

Query: 304 QAH--------AVAVINGMELDNVLGS-----SIINFYSKVGLLEDAEVVFSRMVERDIV 350
             H        A      M+    LG       ++    K G  +D++V  + +V+  + 
Sbjct: 127 SMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVA-AALVDMFVR 185

Query: 351 TWNLLIAS--YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
              + +AS  +V+  +  +   +S++  Y K   +D+A ++F+S+  RDVV WN +++A 
Sbjct: 186 CGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM--------- 459
           +  GR  EA  +   MQ +G+  +  ++ S +    R   +   K +  Q+         
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDP 305

Query: 460 -----------------QSLGV-----QPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
                            ++ GV       N + WT LI+G  Q+ C  E++  F +M   
Sbjct: 306 YVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAE 365

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC------ 551
            +      +   +S C     L  GR +H   ++        +  SL+ MYAKC      
Sbjct: 366 LMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSA 425

Query: 552 -------------------------GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
                                    GNI +A+  FD   +K +  +NAM+  Y  HG   
Sbjct: 426 ESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEE 485

Query: 587 EALALFK-NLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSM 640
           + L ++   L +K + PD +T+  +   C+  G    G ++      VG+  D  V  + 
Sbjct: 486 DGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANA- 544

Query: 641 EHFGCVVNLLSRCGNLDEALRVI 663
                V+ + S+CG + EA +V 
Sbjct: 545 -----VITMYSKCGRILEARKVF 562



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 195/419 (46%), Gaps = 64/419 (15%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           E+V+L  +M+     +       L+ GC  + D+  G+Q+H+  LK+G   A    V   
Sbjct: 354 ESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQA--VVVSNS 411

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG-----------LSEKALIGF 170
           L+  YAKCD L  A  +F  +  K++ SW ++I  + +VG           +S K +I +
Sbjct: 412 LISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITW 471

Query: 171 VEM---------QEDG------------VSPDNFVLPNVLKACGALGWVGFGRAVHGYVL 209
             M         +EDG            V PD      + K C  LG    G  + G  +
Sbjct: 472 NAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTV 531

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR 269
           KVG      VA+++I MY KCG + EARKVFD +  +++V+WN+MI GY Q+G+ ++AI 
Sbjct: 532 KVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIE 591

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEG-------KQAHAVAVINGMELDNVLGS 322
           +F ++   G +P  +S  ++LS  ++   + EG       K+ H ++   G+E      S
Sbjct: 592 IFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNIS--PGLE----HFS 645

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIV-TWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
            +++   + G L +A+ +   M  +     W  L+++    G +++   +          
Sbjct: 646 CMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELA---------- 695

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI-ISWNSV 439
               AK VF  +   D   +  +   YAD G+S +++++   M+ +GI  N   SW  V
Sbjct: 696 ----AKHVFE-LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV 749



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 113/273 (41%), Gaps = 46/273 (16%)

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF- 561
           T     AL +C    +L   RA+HG L+   L     +  +L+  Y  CG +  A+R+  
Sbjct: 4   TQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLL 63

Query: 562 -DIS------------------------------PSKELPVYNAMISGYAMHGLAVEALA 590
            DI+                              P++++  +N ++SGY      + +L 
Sbjct: 64  TDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLE 123

Query: 591 LFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
            F ++ + G   P++ TF   + +C   G  +  L+L +GM      +   +    +V++
Sbjct: 124 SFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQL-LGMVQKFGSQDDSDVAAALVDM 182

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
             RCG +D A R+ + +  +P      S+L   VK+       Y  +H L+L    P   
Sbjct: 183 FVRCGTVDLASRLFVRIK-EPTIFCRNSMLVGYVKT-------YGVDHALELFDSMPERD 234

Query: 710 VA----LSNAYAASGRWNEVSQVRDIMKEKGLR 738
           V     + +A + SGR  E   +   M+ KG+R
Sbjct: 235 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 267


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 188/557 (33%), Positives = 324/557 (58%), Gaps = 30/557 (5%)

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
            G + +AR++FD    R+VV+W +++  Y + G+  +A  +F            V+ T++
Sbjct: 48  AGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALF---DRPDARRNVVTWTAL 104

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERD 348
           LS  A    +DE     A A+   M   NV+  ++++  Y+  G + DA  +F  M  RD
Sbjct: 105 LSGYARAGRVDE-----AEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRD 159

Query: 349 IVTWNLLIASYVQSGQSD-------------VVVASSIVDMYAKCERIDNAKQVFNSIIL 395
             +WN+L+A+ V+SG  D             V+  +++V   A+   +D A+ +F+ +  
Sbjct: 160 AGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPE 219

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
           R+VV WN +++ YA   R  EA  LF +M     + +I SWN +I GF+++  +  A+D+
Sbjct: 220 RNVVSWNAMISGYARNHRIDEAHDLFMKMP----TRDIASWNIMITGFIQDRDLERAQDL 275

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +M     + N+ITWTT+++G  Q+     A+  F  ML  GI+P+  T   A+ AC++
Sbjct: 276 FDKMP----RRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSN 331

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +A L  G+ +H  + +      T I ++L+++YAKCG I  A++VFD+S  K++  +N M
Sbjct: 332 LAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGM 391

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I+ YA HG+ VEA+ L++ +Q+KG  P+ +T+  +L+ACSH+GLV+EGL +F  M  D  
Sbjct: 392 IAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRS 451

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           +    EH+ C+++L SR G L +A R+I  +  +P + +  +LL  C       + +  +
Sbjct: 452 IAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAA 511

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
            +LL+ EP+N G Y  L N YA++G+W E +++R  M ++GL+K PGCSWI++  ++HVF
Sbjct: 512 RNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVENKVHVF 571

Query: 756 VACDRSHPKTEEIYATL 772
           V+ D+SH +++ I + L
Sbjct: 572 VSRDKSHSESDLINSLL 588



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 212/488 (43%), Gaps = 58/488 (11%)

Query: 103 ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL 162
           AR L +     RN    T L+  YA+   +D A  LF R+  +NV SW  ++      G 
Sbjct: 85  ARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGR 144

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
              A   F  M        N +L  ++++    G +   R +   + +      V   ++
Sbjct: 145 VRDAWTLFDGMPVRDAGSWNILLAALVRS----GNMDKARKLFDRMPERN----VMAWTT 196

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           ++    + G ++EAR +FDGM  RNVV+WN+MI GY +N   +EA  +F +M    +   
Sbjct: 197 MVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASW 256

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVF 341
            + +T  +          +     A  + + M   NV+  ++++N Y +    E A  +F
Sbjct: 257 NIMITGFIQ---------DRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIF 307

Query: 342 SRMVERDI----VTW--------NLLIASYVQ---------SGQSDVVVASSIVDMYAKC 380
           + M+   I    VT+        NL   S  Q         S Q D  + S+++++YAKC
Sbjct: 308 NGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKC 367

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             I  A++VF+    +DV+ WN ++AAYA  G   EA  L+ +MQ +G  PN +++  ++
Sbjct: 368 GEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLL 427

Query: 441 LGFLRNGQMNEAKDMFLQM---QSLGVQPNLIT-WTTLISGLTQNSCGNEAILFFQEMLE 496
                +G ++E   +F  M   +S+ V+    T    L S   +       I F +    
Sbjct: 428 SACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLK---- 483

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP----IVTSLVDMYAKCG 552
             ++PS+T     L  C       +G    G L   +L    P      T L ++YA  G
Sbjct: 484 --VEPSSTVWNALLGGCNS-----HGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAG 536

Query: 553 NIHQAKRV 560
              +A ++
Sbjct: 537 KWKEAAKI 544



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 136/279 (48%), Gaps = 6/279 (2%)

Query: 95  MYTGQQIHARILKNGDFF----ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSW 150
           M +G   + RI +  D F     R+      ++  + +   L+ A  LF ++  +NV +W
Sbjct: 228 MISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITW 287

Query: 151 AAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK 210
             ++    +   SE AL  F  M  +G+ P+       + AC  L  +  G+ VH  + K
Sbjct: 288 TTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICK 347

Query: 211 VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270
             F    F+ S+L+++Y KCG++  ARKVFD    ++V++WN MI  Y  +G+  EAI +
Sbjct: 348 TSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHL 407

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-GMELDNVLGSSIINFYS 329
           + +M  +G +P  V+   +LSA ++   +DEG +     V +  + + +   + +I+  S
Sbjct: 408 YEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCS 467

Query: 330 KVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDV 367
           + G L DA+ +   + VE     WN L+      G   +
Sbjct: 468 RAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESI 506



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 186/438 (42%), Gaps = 64/438 (14%)

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           A   R+ +A+++F+    RDVV W  L+AAYA  G   +A  LF +        N+++W 
Sbjct: 46  AAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDAR---RNVVTWT 102

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           +++ G+ R G+++EA+ +F +M     + N+++W T++   T      +A   F  M   
Sbjct: 103 ALLSGYARAGRVDEAEALFQRMP----ERNVVSWNTMLEAYTSAGRVRDAWTLFDGM--- 155

Query: 498 GIKP--STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
              P     +    L+A     ++   R +   +   ++   T +V  +    A+ G++ 
Sbjct: 156 ---PVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGI----ARSGSVD 208

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI------------DPD 603
           +A+ +FD  P + +  +NAMISGYA +    EA  LF  +  + I            D D
Sbjct: 209 EARALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRD 268

Query: 604 ---------------SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
                           IT+T ++N    +      L++F GM  +  ++P+   F   V+
Sbjct: 269 LERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVE-GIRPNQVTFLGAVD 327

Query: 649 LLSRCGNLDEALRV---ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
             S    L E  +V   I       D  I  +L++   K  E  LA  + +  L  E D 
Sbjct: 328 ACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFD--LSKEKDV 385

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN--------PGCS---WIQIGEELHV 754
             ++  +  AYA  G   E   + + M+EKG + N          CS    +  G  +  
Sbjct: 386 I-SWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFE 444

Query: 755 FVACDRSHPKTEEIYATL 772
           ++  DRS    +E Y  L
Sbjct: 445 YMVKDRSIAVRDEHYTCL 462



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 12/198 (6%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           GQQ+H  I K    F  + ++E+ L+  YAKC  + +A ++F   + K+V SW  +I   
Sbjct: 338 GQQVHQMICKTS--FQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAY 395

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
              G+  +A+  + +MQE G  P++     +L AC   G V  G  +  Y++K   D  +
Sbjct: 396 AHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVK---DRSI 452

Query: 218 FVA----SSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
            V     + LID+  + G L +A+++   + +  +   WN+++ G   +G   E+I    
Sbjct: 453 AVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHG--NESIGDLA 510

Query: 273 EMTLEGVEPTRVSVTSIL 290
              L   EP      ++L
Sbjct: 511 ARNLLEAEPNNAGTYTLL 528


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  363 bits (931), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 213/640 (33%), Positives = 324/640 (50%), Gaps = 98/640 (15%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIAR--NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           L+D+Y  C +L+ AR VFD M  R  NVV WN +I  Y  NG  EEAI ++Y+M   G+ 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P R +   +L A + L    EG++ H       +E +  + +++++FY+K G L+DA+ V
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEV 176

Query: 341 FSRMVERDIVTWNLLIA-------SYVQSGQ----------------------------- 364
           F +M +RD+V WN +I+       SY +  +                             
Sbjct: 177 FDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSL 236

Query: 365 ----------------SDVVVASSIVDMYAKCERIDNAKQVFNSI-ILRDVVLWNTLLAA 407
                            DVVV + I+D+Y KC+ ID A+++F+ + I+++ V W+ ++ A
Sbjct: 237 RHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296

Query: 408 YADLGRSGEASRLFYQMQL--------------------------------------EGI 429
           Y       EA  LF Q+ +                                       G 
Sbjct: 297 YVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGF 356

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
             +++  N+++  + + G +N A   F +M       + +++T +ISG  QN    E + 
Sbjct: 357 VLDLMVGNTLLSMYAKCGIINGAMRFFNEMD----LRDAVSFTAIISGYVQNGNSEEGLR 412

Query: 490 FFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
            F EM  +GI P   T+   L AC  +A L  G   H Y I       T I  +L+DMYA
Sbjct: 413 MFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYA 472

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           KCG I  A++VFD    + +  +N MI  Y +HG+ +EAL LF N+Q +G+ PD +TF  
Sbjct: 473 KCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFIC 532

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669
           +++ACSH+GLV EG   F  M  D  + P MEH+ C+V+LLSR G   E    I  MP +
Sbjct: 533 LISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLE 592

Query: 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR 729
           PD  + G+LLS C      EL E +S+ + +L P++ GN+V LSN Y+A GRW++ +QVR
Sbjct: 593 PDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVR 652

Query: 730 DIMKEKGLRKNPGCSWIQIGEELHVFVACD-RSHPKTEEI 768
              KE+G  K+PGCSWI+I   +H F+    RSHP+  +I
Sbjct: 653 FTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQI 692


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  363 bits (931), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 194/578 (33%), Positives = 331/578 (57%), Gaps = 31/578 (5%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI      G + +ARK+FDG    +VV+W +++  Y + G+  +A  +F           
Sbjct: 48  LIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELF---DRPDARRN 104

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVF 341
            V+ T++LS  A    +DE     A A+   M   NV+  ++++  Y+  G + DA  +F
Sbjct: 105 VVTWTALLSGYARARLVDE-----AEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALF 159

Query: 342 SRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKCERIDNAKQ 388
            RM  RD  +WN+L+A+ V+SG             + DV+  +++VD  A+  ++D A+ 
Sbjct: 160 DRMPVRDAGSWNILLATLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGKVDEARV 219

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           +F+S+  R+VV WN +++ Y    R  EA  LF +M       +I S N ++ GF++N  
Sbjct: 220 LFDSMPERNVVSWNAMISGYTRNHRIDEALDLFMKMP----ERDIASCNIMVTGFIQNKD 275

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           +  A+++F +M     + N++TWTT+++G  +      A+  F  ML  G +P+  T   
Sbjct: 276 LKRARELFDEMP----ERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLG 331

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
           AL AC+D+A+L  G+ +H  + +        + ++L+++YAKCG I  A+++FD+S  K+
Sbjct: 332 ALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKD 391

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           L  +N +I+ YA HG+ +EA+ L++ +Q+ G  P+ +T+  +L+ACSH+GLV+EGL++F 
Sbjct: 392 LISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFE 451

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP-DAHIIGSLLSTCVKSNE 687
            M +D  +    EH+ C+++L SR G LD+A R+I  +   P    +  +LL  C     
Sbjct: 452 SMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGN 511

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
             +    + +LLQ EPDN G Y  LSN YA++G+W E +++R  M  +GL+K PGCSWI+
Sbjct: 512 ESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIE 571

Query: 748 IGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           +  ++HVFVA D+SH +++ IY  L  +   +R+V  V
Sbjct: 572 VANKVHVFVARDKSHSESDLIYGLLQNIHHMMRIVGTV 609



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 126/538 (23%), Positives = 218/538 (40%), Gaps = 113/538 (21%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN    T L+  YA+   +D A  LF R+  +NV SW  ++      G    A   F  M
Sbjct: 103 RNVVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRM 162

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
                   N +L  ++++    G V   R + G + +      V   ++++D   + G +
Sbjct: 163 PVRDAGSWNILLATLVRS----GSVDKARELFGRMPERD----VMAWTTMVDGVARSGKV 214

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           +EAR +FD M  RNVV+WN+MI GY +N   +EA+ +F +M    +    + VT  +   
Sbjct: 215 DEARVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIMVTGFIQ-- 272

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
            N D                                    L+ A  +F  M ER++VTW 
Sbjct: 273 -NKD------------------------------------LKRARELFDEMPERNVVTWT 295

Query: 354 LLIASYVQSGQSDVVVA---------------------SSIVDMYAKCERIDNAKQVFNS 392
            ++  Y++  QS++ +                       +  D+ A CE     + +  +
Sbjct: 296 TMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKT 355

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
               D  + + L+  YA  G  G A +LF   +      ++ISWN +I  +  +G   EA
Sbjct: 356 TFQFDAFVESALMNVYAKCGEIGLARKLFDLSR----EKDLISWNGIIAAYAHHGVGIEA 411

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
             ++ +MQ  G +PN +T+  L+S  + +   +E +  F+ M+                 
Sbjct: 412 ILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMV----------------- 454

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV---FDISPSKEL 569
                   N R+I          +     T L+D+ ++ G +  AKR+     I P+   
Sbjct: 455 --------NDRSI---------AVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASG- 496

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI-TFTNILNACSHAGLVNEGLEL 626
            V++A++ G   HG         +NL Q   +PD+  T+T + N  + AG   E  E+
Sbjct: 497 SVWSALLGGCNAHGNESIGNLAARNLLQA--EPDNAGTYTLLSNIYASAGKWKEAAEI 552



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 13/242 (5%)

Query: 56  KEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARN 115
           K KQ   A+ L + M     +     +   L  C     +  G+Q+H  I K    F  +
Sbjct: 303 KGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKT--TFQFD 360

Query: 116 EYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
            +VE+ L+  YAKC  + +A +LF   R K++ SW  II      G+  +A++ + +MQE
Sbjct: 361 AFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQE 420

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA----SSLIDMYGKCG 231
           +G  P++     +L AC   G V  G  +   ++    D  + V     + LID+  + G
Sbjct: 421 NGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVN---DRSIAVRDEHYTCLIDLCSRAG 477

Query: 232 DLEEARKVFDGMIARNVVA--WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
            L++A+++   +  +      W++++ G   +G   E+I       L   EP      ++
Sbjct: 478 RLDDAKRLIHYLKIKPASGSVWSALLGGCNAHG--NESIGNLAARNLLQAEPDNAGTYTL 535

Query: 290 LS 291
           LS
Sbjct: 536 LS 537


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 195/605 (32%), Positives = 326/605 (53%), Gaps = 54/605 (8%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M++ G   D F  P V++AC  +G    G+ +HG+VL++GF   + V + LI MY K G 
Sbjct: 33  MRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGR 92

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           + +AR +FD M  R+ ++WN+M+  Y  N     A+ +F  M  EG+EP  V+ TS++S+
Sbjct: 93  MRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISS 152

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A     +E  +   +  + G+E+     + +I+  + +G    A+++    V+     +
Sbjct: 153 YARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEY 212

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
           +               V S+++ +Y K   ++ A  +F  +  + +  WN L+ ++A+ G
Sbjct: 213 SF--------------VKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAG 258

Query: 413 RSGEASRLFYQMQLEG----ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
              EA  +F Q++  G    + PN++SW+++I GF   G+  EA ++F +MQ   +  N 
Sbjct: 259 LCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANA 318

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           +                                   TI+  LS C ++A+L  GR IHG+
Sbjct: 319 V-----------------------------------TISTVLSLCAELAALHLGREIHGH 343

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           ++R  +     +   LV+MYAKCG + +   +F+ +  K+L  +N+MI+GY MHGL + A
Sbjct: 344 VVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNA 403

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L  F  + + G  PD +TF  +L++CSH+GLV+EG  LF  M   ++++P MEH+ C+V+
Sbjct: 404 LETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVD 463

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL-EPDNPG 707
           LL R G L EA  ++  MP  P+A + G+LL++C   N TE+AE  + HL  L   +  G
Sbjct: 464 LLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAEETASHLFNLSHRETTG 523

Query: 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEE 767
            Y+ LSN YAASGRW + ++VR   K KGL+KNPG SWI++ + ++ F A +      E+
Sbjct: 524 TYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWIKVEKNVYTFSAGNNMQRGFEQ 583

Query: 768 IYATL 772
           I+  L
Sbjct: 584 IFEIL 588



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 204/479 (42%), Gaps = 109/479 (22%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +++ C Y      G+ IH  +L+ G  F  + +V  +L+  YAK   +  A  LF R+ V
Sbjct: 48  VIRACAYMGSFILGKTIHGHVLEMG--FQSHLHVGNELIGMYAKLGRMRDARHLFDRMSV 105

Query: 145 K-----------------------------------NVFSWAAIIGLNCRVGLSEKALIG 169
           +                                   N+ +W ++I    R G  E+A+  
Sbjct: 106 RSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEAMEL 165

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  M+  GV      L  V+  C  LG     + +H Y +K GF+   FV S+LI +YGK
Sbjct: 166 FGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGK 225

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP-------- 281
            GD+  A  +F  M  +++ +WN++I  + + GL +EA+ +F ++   G  P        
Sbjct: 226 HGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVS 285

Query: 282 -------------------------------TRVSVTSILSASANLDALDEGKQAHAVAV 310
                                            V+++++LS  A L AL  G++ H   V
Sbjct: 286 WSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIHG-HV 344

Query: 311 INGMELDNVL-GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV 369
           +  + ++N+L G+ ++N Y+K G L++  ++F +   +D+++WN +I  Y   G      
Sbjct: 345 VRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLG---- 400

Query: 370 ASSIVDMYAKCERIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQM- 424
                          NA + F+ +I      D V +  +L++ +  G   E  RLF QM 
Sbjct: 401 --------------MNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQML 446

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           +   I P +  +  ++    R G + EA ++   ++++ V PN   W  L+     NSC
Sbjct: 447 KKYRIEPQMEHYACMVDLLGRAGLLREASEI---VKNMPVAPNACVWGALL-----NSC 497



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 182/423 (43%), Gaps = 57/423 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ISS ++     EA++L   M+ +  ++  E    ++  C         + IH   +K G 
Sbjct: 150 ISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGG- 208

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F    +V++ L+  Y K   ++ A  LF  ++ K++ SW A+I  +   GL ++AL  F
Sbjct: 209 -FEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIF 267

Query: 171 VEMQEDGVSP-------------DNF--------------------VLPN------VLKA 191
            +++  G  P             D F                    +L N      VL  
Sbjct: 268 SQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSL 327

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C  L  +  GR +HG+V++      + V + L++MY KCG L+E   +F+    +++++W
Sbjct: 328 CAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISW 387

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           NSMI GY  +GL   A+  F +M   G +P  V+  ++LS+ ++   + EG++     + 
Sbjct: 388 NSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLK 447

Query: 312 N-GMELDNVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDVVV 369
              +E      + +++   + GLL +A E+V +  V  +   W  L+ S      +++  
Sbjct: 448 KYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAE 507

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
                         + A  +FN         +  L   YA  GR  +++R+    + +G+
Sbjct: 508 --------------ETASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGL 553

Query: 430 SPN 432
             N
Sbjct: 554 KKN 556



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 4/170 (2%)

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
           + M + G      T    + AC  + S   G+ IHG+++         +   L+ MYAK 
Sbjct: 31  RRMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKL 90

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G +  A+ +FD    +    +N M+S YA +     AL +F+ ++ +G++P+ +T+T+++
Sbjct: 91  GRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLI 150

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
           ++ + +G   E +ELF G+     V+ S E    V+++   C +L   +R
Sbjct: 151 SSYARSGWHEEAMELF-GLMRMKGVEVSGEALAVVISI---CADLGAFVR 196


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 220/712 (30%), Positives = 373/712 (52%), Gaps = 69/712 (9%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS-PDNFV 184
           YAK   L  A  LF R+  ++V SW  ++    +      +L  F+ M   G S P+ F 
Sbjct: 101 YAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFT 160

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCG--DL--------- 233
           L   +K+CGALGW      +   V K        VA++L+DM+ +CG  DL         
Sbjct: 161 LACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIK 220

Query: 234 --------------------EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
                               + A ++FD M  R+VV+WN M+    Q+G   EA+ +  +
Sbjct: 221 EPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVD 280

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M  +GV     + TS L+A A L +L  GKQ HA  + N   +D  + S+++  Y+K G 
Sbjct: 281 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC 340

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSG--QSDVVVASSI------VDMYAK------ 379
            ++A+ VF+ + +R+ V W +LI+ ++Q G     V + + +      +D +A       
Sbjct: 341 FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISG 400

Query: 380 -CERIDNA-KQVFNSIILRD-----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
            C R+D    +  +S+ L+      VV+ N+L++ YA       A  +F  M       +
Sbjct: 401 CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN----EKD 456

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
           I+SW S+I  + + G + +A++ F  M     + N+ITW  ++    Q+    + +  ++
Sbjct: 457 IVSWTSMITAYSQVGNVAKAREFFDGMS----EKNVITWNAMLGAYIQHGAEEDGLRMYK 512

Query: 493 EML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
            ML E  ++P   T       C D+ + + G  I G  ++  L + T +  +++ MY+KC
Sbjct: 513 VMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKC 572

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G I +A++VFD    K++  +NAMI+GY+ HG+  +A+ +F ++ ++G  PD I++  +L
Sbjct: 573 GRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVL 632

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
           + CSH+GLV EG   F  M   H + P +EHF C+V+LL R G+L EA  +I  MP  P 
Sbjct: 633 SGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPT 692

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
           A + G+LLS C      ELAE  ++H+ +L+  + G+Y+ ++  YA +G+ ++ +Q+R +
Sbjct: 693 AEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKL 752

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHP-------KTEEIYATLALLG 776
           M++KG++KNPG SW+++  ++HVF A D SHP       K +E+   +A LG
Sbjct: 753 MRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLG 804



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 218/469 (46%), Gaps = 60/469 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +S+LS+  ++REA+D++ +M+ +  ++    Y   L  C     +  G+Q+HA++
Sbjct: 257 SWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQV 316

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++N      + YV + LV  YAK      A  +F  L  +N  +W  +I    + G   +
Sbjct: 317 IRNLPHI--DPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTE 374

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           ++  F +M+ + ++ D F L  ++  C +   +  GR +H   LK G    V V++SLI 
Sbjct: 375 SVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLIS 434

Query: 226 MYGKC-------------------------------GDLEEARKVFDGMIARNVVAWNSM 254
           MY KC                               G++ +AR+ FDGM  +NV+ WN+M
Sbjct: 435 MYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAM 494

Query: 255 IVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           +  Y+Q+G  E+ +R++  M + E V P  V+  ++    A+L A   G Q     V  G
Sbjct: 495 LGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVG 554

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373
           + +D  + +++I  YSK G + +A  VF  +  +DIV+WN +I  Y Q G          
Sbjct: 555 LIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMG-------- 606

Query: 374 VDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEG 428
                       A ++F+ I+ R    D + +  +L+  +  G   E    F  M+    
Sbjct: 607 ----------KQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHN 656

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
           ISP +  ++ ++    R G + EAKD+   +  + ++P    W  L+S 
Sbjct: 657 ISPGLEHFSCMVDLLGRAGHLTEAKDL---IDDMPMKPTAEVWGALLSA 702



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 196/419 (46%), Gaps = 64/419 (15%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           E+V+L  +M+     +       L+ GC  + D+  G+Q+H+  LK+G   A    V   
Sbjct: 374 ESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQA--VVVSNS 431

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG-----------LSEKALIGF 170
           L+  YAKCD L  A  +F  +  K++ SW ++I    +VG           +SEK +I +
Sbjct: 432 LISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITW 491

Query: 171 VEM---------QEDG------------VSPDNFVLPNVLKACGALGWVGFGRAVHGYVL 209
             M         +EDG            V PD      + K C  LG    G  + G  +
Sbjct: 492 NAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTV 551

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR 269
           KVG      VA+++I MY KCG + EARKVFD +  +++V+WN+MI GY Q+G+ ++AI 
Sbjct: 552 KVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIE 611

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEG-------KQAHAVAVINGMELDNVLGS 322
           +F ++   G +P  +S  ++LS  ++   + EG       K+AH ++   G+E      S
Sbjct: 612 IFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNIS--PGLE----HFS 665

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIV-TWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
            +++   + G L +A+ +   M  +     W  L+++    G +++   +          
Sbjct: 666 CMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELA---------- 715

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI-ISWNSV 439
               AK VF  +   D   +  +   YAD G+S +++++   M+ +GI  N   SW  V
Sbjct: 716 ----AKHVFE-LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV 769



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 123/540 (22%), Positives = 223/540 (41%), Gaps = 97/540 (17%)

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK------ 238
             + L++CGA G +   RA+HG ++ VG    VF+ ++L+  Y  CG L +AR+      
Sbjct: 27  FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 86

Query: 239 --------------------------VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
                                     +F  M AR+V +WN+++ GY Q+     ++  F 
Sbjct: 87  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 146

Query: 273 EMTLEGVE-PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
            M   G   P   ++   + +   L       Q  A+      + D+ + +++++ + + 
Sbjct: 147 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 206

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
           G ++ A  +F R+ E  +   N ++A YV                  K   +D+A ++F+
Sbjct: 207 GAVDLASRLFVRIKEPTMFCRNSMLAGYV------------------KTYGVDHALELFD 248

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG--------- 442
           S+  RDVV WN +++A +  GR  EA  +   MQ +G+  +  ++ S +           
Sbjct: 249 SMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRW 308

Query: 443 --------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
                                     + ++G   EAK +F  +       N + WT LIS
Sbjct: 309 GKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLH----DRNNVAWTVLIS 364

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           G  Q  C  E++  F +M    +      +   +S C     L  GR +H   ++     
Sbjct: 365 GFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQ 424

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              +  SL+ MYAKC N+  A+ +F     K++  + +MI+ Y+  G   +A   F  + 
Sbjct: 425 AVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMS 484

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           +K +    IT+  +L A    G   +GL ++  M S+  V+P    +   V L   C +L
Sbjct: 485 EKNV----ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY---VTLFKGCADL 537



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 112/273 (41%), Gaps = 46/273 (16%)

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF- 561
           T     AL +C    +L   RA+HG L+   L     +  +L+  Y  CG +  A+R+  
Sbjct: 24  TQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLL 83

Query: 562 -DIS------------------------------PSKELPVYNAMISGYAMHGLAVEALA 590
            DI+                              P++++  +N ++SGY      + +L 
Sbjct: 84  MDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLE 143

Query: 591 LFKNLQQKGID-PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
            F ++ + G   P++ T    + +C   G  +  L+L + M      +   E    +V++
Sbjct: 144 TFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQL-LAMVQKFDSQDDSEVAAALVDM 202

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
             RCG +D A R+ + +  +P      S+L+  VK+       Y  +H L+L    P   
Sbjct: 203 FVRCGAVDLASRLFVRIK-EPTMFCRNSMLAGYVKT-------YGVDHALELFDSMPERD 254

Query: 710 VA----LSNAYAASGRWNEVSQVRDIMKEKGLR 738
           V     + +A + SGR  E   +   M+ KG+R
Sbjct: 255 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 287


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  362 bits (930), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 217/712 (30%), Positives = 370/712 (51%), Gaps = 69/712 (9%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS-PDNFV 184
           YAK   L  A  LF R+  ++V SW  ++    +      +L  F+ M   G S P+ F 
Sbjct: 81  YAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFT 140

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCG------------- 231
           L   +K+CGALGW      +   V K        VA++L+DM+ +CG             
Sbjct: 141 LACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIK 200

Query: 232 ------------------DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
                              ++ A ++FD M  R+VV+WN M+    Q+G   EA+ +  +
Sbjct: 201 EPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVD 260

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M  +GV     + TS L+A A L +L  GKQ HA  + N   +D  + S+++  Y+K G 
Sbjct: 261 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC 320

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQ--------SDVVVASSIVDMYAK------ 379
            ++A+ VF+ + +R+ V W +LI+ ++Q G         + +      +D +A       
Sbjct: 321 FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISG 380

Query: 380 -CERIDNA-KQVFNSIILRD-----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
            C R+D    +  +S+ L+      VV+ N+L++ YA       A  +F  M       +
Sbjct: 381 CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN----EKD 436

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
           I+SW S+I  + + G + +A++ F  M     + N+ITW  ++    Q+    + +  ++
Sbjct: 437 IVSWTSMITAYSQVGNVAKAREFFDGMS----EKNVITWNAMLGAYIQHGAEEDGLRMYK 492

Query: 493 EML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
            ML E  ++P   T       C D+ + + G  I G  ++  L + T +  +++ MY+KC
Sbjct: 493 VMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKC 552

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G I +A++VFD    K++  +NAMI+GY+ HG+  +A+ +F ++ ++G  PD I++  +L
Sbjct: 553 GRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVL 612

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
           + CSH+GLV EG   F  M   H + P +EHF C+V+LL R G+L EA  +I  MP  P 
Sbjct: 613 SGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPT 672

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
           A + G+LLS C      ELAE  ++H+ +L+  + G+Y+ ++  YA +G+ ++ +Q+R +
Sbjct: 673 AEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKL 732

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHP-------KTEEIYATLALLG 776
           M++KG++KNPG SW+++  ++HVF A D SHP       K +E+   +A LG
Sbjct: 733 MRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLG 784



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 218/469 (46%), Gaps = 60/469 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +S+LS+  ++REA+D++ +M+ +  ++    Y   L  C     +  G+Q+HA++
Sbjct: 237 SWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQV 296

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++N      + YV + LV  YAK      A  +F  L  +N  +W  +I    + G   +
Sbjct: 297 IRNLPHI--DPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTE 354

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           ++  F +M+ + ++ D F L  ++  C +   +  GR +H   LK G    V V++SLI 
Sbjct: 355 SVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLIS 414

Query: 226 MYGKC-------------------------------GDLEEARKVFDGMIARNVVAWNSM 254
           MY KC                               G++ +AR+ FDGM  +NV+ WN+M
Sbjct: 415 MYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAM 474

Query: 255 IVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           +  Y+Q+G  E+ +R++  M + E V P  V+  ++    A+L A   G Q     V  G
Sbjct: 475 LGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVG 534

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373
           + +D  + +++I  YSK G + +A  VF  +  +DIV+WN +I  Y Q G          
Sbjct: 535 LIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMG-------- 586

Query: 374 VDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEG 428
                       A ++F+ I+ R    D + +  +L+  +  G   E    F  M+    
Sbjct: 587 ----------KQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHN 636

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
           ISP +  ++ ++    R G + EAKD+   +  + ++P    W  L+S 
Sbjct: 637 ISPGLEHFSCMVDLLGRAGHLTEAKDL---IDDMPMKPTAEVWGALLSA 682



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 196/419 (46%), Gaps = 64/419 (15%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           E+V+L  +M+     +       L+ GC  + D+  G+Q+H+  LK+G   A    V   
Sbjct: 354 ESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQA--VVVSNS 411

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG-----------LSEKALIGF 170
           L+  YAKCD L  A  +F  +  K++ SW ++I    +VG           +SEK +I +
Sbjct: 412 LISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITW 471

Query: 171 VEM---------QEDG------------VSPDNFVLPNVLKACGALGWVGFGRAVHGYVL 209
             M         +EDG            V PD      + K C  LG    G  + G  +
Sbjct: 472 NAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTV 531

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR 269
           KVG      VA+++I MY KCG + EARKVFD +  +++V+WN+MI GY Q+G+ ++AI 
Sbjct: 532 KVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIE 591

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEG-------KQAHAVAVINGMELDNVLGS 322
           +F ++   G +P  +S  ++LS  ++   + EG       K+AH ++   G+E      S
Sbjct: 592 IFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNIS--PGLE----HFS 645

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIV-TWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
            +++   + G L +A+ +   M  +     W  L+++    G +++   +          
Sbjct: 646 CMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELA---------- 695

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI-ISWNSV 439
               AK VF  +   D   +  +   YAD G+S +++++   M+ +GI  N   SW  V
Sbjct: 696 ----AKHVFE-LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV 749



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 123/540 (22%), Positives = 223/540 (41%), Gaps = 97/540 (17%)

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK------ 238
             + L++CGA G +   RA+HG ++ VG    VF+ ++L+  Y  CG L +AR+      
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 66

Query: 239 --------------------------VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
                                     +F  M AR+V +WN+++ GY Q+     ++  F 
Sbjct: 67  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 126

Query: 273 EMTLEGVE-PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
            M   G   P   ++   + +   L       Q  A+      + D+ + +++++ + + 
Sbjct: 127 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 186

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
           G ++ A  +F R+ E  +   N ++A YV                  K   +D+A ++F+
Sbjct: 187 GAVDLASRLFVRIKEPTMFCRNSMLAGYV------------------KTYGVDHALELFD 228

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG--------- 442
           S+  RDVV WN +++A +  GR  EA  +   MQ +G+  +  ++ S +           
Sbjct: 229 SMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRW 288

Query: 443 --------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
                                     + ++G   EAK +F  +       N + WT LIS
Sbjct: 289 GKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLH----DRNNVAWTVLIS 344

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           G  Q  C  E++  F +M    +      +   +S C     L  GR +H   ++     
Sbjct: 345 GFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQ 404

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              +  SL+ MYAKC N+  A+ +F     K++  + +MI+ Y+  G   +A   F  + 
Sbjct: 405 AVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMS 464

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           +K +    IT+  +L A    G   +GL ++  M S+  V+P    +   V L   C +L
Sbjct: 465 EKNV----ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY---VTLFKGCADL 517



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 112/273 (41%), Gaps = 46/273 (16%)

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF- 561
           T     AL +C    +L   RA+HG L+   L     +  +L+  Y  CG +  A+R+  
Sbjct: 4   TQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLL 63

Query: 562 -DIS------------------------------PSKELPVYNAMISGYAMHGLAVEALA 590
            DI+                              P++++  +N ++SGY      + +L 
Sbjct: 64  MDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLE 123

Query: 591 LFKNLQQKGID-PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
            F ++ + G   P++ T    + +C   G  +  L+L + M      +   E    +V++
Sbjct: 124 TFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQL-LAMVQKFDSQDDSEVAAALVDM 182

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
             RCG +D A R+ + +  +P      S+L+  VK+       Y  +H L+L    P   
Sbjct: 183 FVRCGAVDLASRLFVRIK-EPTMFCRNSMLAGYVKT-------YGVDHALELFDSMPERD 234

Query: 710 VA----LSNAYAASGRWNEVSQVRDIMKEKGLR 738
           V     + +A + SGR  E   +   M+ KG+R
Sbjct: 235 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 267


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 193/553 (34%), Positives = 320/553 (57%), Gaps = 40/553 (7%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           +++I  Y KCG + EARK+FD   A+ NVV W +M+ GY++    +EA R+FYEM L  V
Sbjct: 36  TTMITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNV 95

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAE 338
               VS  +++   A       G    A+ +   M   NV+  ++II    + G +EDA+
Sbjct: 96  ----VSWNTMVDGYAR-----NGLTQQALDLFRRMPERNVVSWNTIITALVQCGRIEDAQ 146

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
            +F +M +RD+V+W  ++A   ++G                  R+++A+ +F+ + +R+V
Sbjct: 147 RLFDQMKDRDVVSWTTMVAGLAKNG------------------RVEDARALFDQMPVRNV 188

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
           V WN ++  YA   R  EA +LF +M       ++ SWN++I GF++NG++N A+ +F +
Sbjct: 189 VSWNAMITGYAQNRRLDEALQLFQRMP----ERDMPSWNTMITGFIQNGELNRAEKLFGE 244

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVA 517
           MQ    + N+ITWT +++G  Q+    EA+  F +ML T  +KP+T T    L AC+D+A
Sbjct: 245 MQ----EKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLA 300

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD--ISPSKELPVYNAM 575
            L  G+ IH  + +      T +V++L++MY+KCG +H A+++FD  +   ++L  +N M
Sbjct: 301 GLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGM 360

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I+ YA HG   EA+ LF  +Q+ G+  + +TF  +L ACSH GLV EG + F  +  +  
Sbjct: 361 IAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRS 420

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           ++   +H+ C+V+L  R G L EA  +I  +  +    + G+LL+ C      ++ + ++
Sbjct: 421 IQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVA 480

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           E +L++EP N G Y  LSN YA+ G+W E + VR  MK+ GL+K PGCSWI++G  + VF
Sbjct: 481 EKILKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNTVQVF 540

Query: 756 VACDRSHPKTEEI 768
           V  D+ H + E +
Sbjct: 541 VVGDKPHSQYEPL 553



 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 114/431 (26%), Positives = 197/431 (45%), Gaps = 51/431 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS L +E +I  A  +  EM  R+  IG  ++  ++ G      +  G    AR L +  
Sbjct: 8   ISRLCREGEIDYARKVFEEMPERD--IG--LWTTMITGY-----LKCGMIREARKLFDRW 58

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
              +N    T +V  Y K + +  A RLF  + ++NV SW  ++    R GL+++AL  F
Sbjct: 59  DAKKNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLF 118

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M E  V   N ++  +++ CG +            +     D  V   ++++    K 
Sbjct: 119 RRMPERNVVSWNTIITALVQ-CGRI-------EDAQRLFDQMKDRDVVSWTTMVAGLAKN 170

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E+AR +FD M  RNVV+WN+MI GY QN   +EA+++F  M    +      +T  +
Sbjct: 171 GRVEDARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFI 230

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDI 349
                      G+   A  +   M+  NV+  ++++  Y + GL E+A  VF +M+  + 
Sbjct: 231 Q---------NGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNE 281

Query: 350 VTWNLLIASYVQSGQSDVV----------------------VASSIVDMYAKCERIDNAK 387
           +  N      V    SD+                       V S++++MY+KC  +  A+
Sbjct: 282 LKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTAR 341

Query: 388 QVFNSIIL--RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           ++F+  +L  RD++ WN ++AAYA  G   EA  LF +MQ  G+  N +++  ++     
Sbjct: 342 KMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSH 401

Query: 446 NGQMNEAKDMF 456
            G + E    F
Sbjct: 402 TGLVEEGFKYF 412



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 14/214 (6%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF--CRL 142
           +L  C     +  GQQIH  I K    F  +  V + L+  Y+KC  L  A ++F    L
Sbjct: 292 VLGACSDLAGLTEGQQIHQMISKT--VFQDSTCVVSALINMYSKCGELHTARKMFDDGLL 349

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
             +++ SW  +I      G  ++A+  F EMQE GV  ++     +L AC   G V  G 
Sbjct: 350 SQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGF 409

Query: 203 AVHGYVLKVGFDGCVFVA----SSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVG 257
                +LK   +  + +     + L+D+ G+ G L+EA  + +G+     +  W +++ G
Sbjct: 410 KYFDEILK---NRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAG 466

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
              +G N +  ++  E  L+ +EP      S+LS
Sbjct: 467 CNVHG-NADIGKLVAEKILK-IEPQNAGTYSLLS 498


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  362 bits (929), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 207/620 (33%), Positives = 338/620 (54%), Gaps = 55/620 (8%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           +VL+ C  L     G+ VH  +    VG D  + +   L+  Y  CGDL+E R+VFD M 
Sbjct: 104 SVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGL--KLVSFYATCGDLKEGRRVFDTME 161

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            +NV  WN M+  Y + G  +E+I +F  M  +G+E  R       SA    D L     
Sbjct: 162 KKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPE-----SAFELFDKL----- 211

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM----VERDIVTWNLLIASYV 360
                     + D +  +S+I+ Y   GL E    ++ +M    ++ D+ T   ++    
Sbjct: 212 ---------CDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCA 262

Query: 361 QSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
            SG                 +  +  +++++DMY+KC  +D A +VF  +  R+VV W +
Sbjct: 263 NSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 322

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           ++A Y   GRS  A +L  QM+ EG+  ++++  S++    R+G ++  KD+   +++  
Sbjct: 323 MIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANN 382

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI----------KPSTTTITCALSAC 513
           ++ NL     L+    +      A   F  M+   I          KP + T+ C L AC
Sbjct: 383 MESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPAC 442

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
             +++L  G+ IHGY++R+       +  +LVD+Y KCG +  A+ +FD+ PSK+L  + 
Sbjct: 443 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWT 502

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            MI+GY MHG   EA+A F  ++  GI+PD ++F +IL ACSH+GL+ +G   F  M +D
Sbjct: 503 VMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 562

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
             ++P +EH+ C+V+LLSR GNL +A   I T+P  PDA I G+LL  C   ++ ELAE 
Sbjct: 563 FNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEK 622

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
           ++E + +LEP+N G YV L+N YA + +W EV ++R+ + ++GLRKNPGCSWI+I  +++
Sbjct: 623 VAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVN 682

Query: 754 VFVACDR-SHPKTEEIYATL 772
           +FV+ +  SHP ++ I + L
Sbjct: 683 LFVSGNNSSHPHSKNIESLL 702



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 145/527 (27%), Positives = 245/527 (46%), Gaps = 88/527 (16%)

Query: 72  CRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131
           C+  ++  + Y  +LQ C   +    G+++H+ I  N      +E +  KLV FYA C  
Sbjct: 92  CKKSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNS--VGVDEALGLKLVSFYATCGD 149

Query: 132 LDVASRLFCRLRVKNVF------------------------------------------- 148
           L    R+F  +  KNV+                                           
Sbjct: 150 LKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFD 209

Query: 149 --------SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
                   SW ++I      GL+E+ L  + +M   G+  D   + +VL  C   G +  
Sbjct: 210 KLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSL 269

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+AVH   +K  F+  +  +++L+DMY KCGDL+ A +VF+ M  RNVV+W SMI GY +
Sbjct: 270 GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTR 329

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +G ++ AI++  +M  EGV+   V++TSIL A A   +LD GK  H     N ME +  +
Sbjct: 330 DGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFV 389

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA-------------------SYVQ 361
            +++++ Y+K G +E A  VFS MV +DI++WN +I                    S ++
Sbjct: 390 CNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALE 449

Query: 362 SGQ------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
            G+            SD  VA+++VD+Y KC  +  A+ +F+ I  +D+V W  ++A Y 
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 509

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNL 468
             G   EA   F +M+  GI P+ +S+ S++     +G + +    F  M++   ++P L
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
             +  ++  L++    ++A  F + +    I P  T     L  C +
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFIETL---PIAPDATIWGALLCGCRN 613



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 215/462 (46%), Gaps = 70/462 (15%)

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
           I   V  +N+ I+ + Q G  E A+ +        +E    + +S+L   A L +  +GK
Sbjct: 62  IDHQVTDYNAKILHFCQLGDLENAMELICMCKKSELETK--TYSSVLQLCAGLKSFTDGK 119

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
           + H++   N + +D  LG  +++FY+  G L++   VF  M ++++  WN +++ Y + G
Sbjct: 120 KVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIG 179

Query: 364 --QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
             +  + +   +V+   + +R ++A ++F+ +  RDV+ WN++++ Y   G +     ++
Sbjct: 180 DFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIY 239

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAK----------------------DMFLQ- 458
            QM   GI  ++ +  SV++G   +G ++  K                      DM+ + 
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC 299

Query: 459 ---------MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
                     + +G + N+++WT++I+G T++   + AI   Q+M + G+K     IT  
Sbjct: 300 GDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSI 358

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L AC    SL NG+ +H Y+  +++     +  +L+DMYAKCG++  A  VF     K++
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDI 418

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE---- 625
             +N MI                       + PDS T   +L AC+    +  G E    
Sbjct: 419 ISWNTMIG---------------------ELKPDSRTMACVLPACASLSALERGKEIHGY 457

Query: 626 -LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
            L  G  SD  V  ++      V+L  +CG L  A R++  M
Sbjct: 458 ILRNGYSSDRHVANAL------VDLYVKCGVLGLA-RLLFDM 492


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  362 bits (929), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 219/732 (29%), Positives = 368/732 (50%), Gaps = 91/732 (12%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A  LF +   ++  S+ +++    R G +++A   F+ +   G+  D  +  +VLK    
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           L    FGR +H   +K GF   V V +SL+D Y K  + ++ RKVFD M  RNVV W ++
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           I GY +N +N+E + +F  M  EG +P   +  + L   A       G Q H V V NG+
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 225

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA----------------- 357
           +    + +S+IN Y K G +  A ++F +   + +VTWN +I+                 
Sbjct: 226 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 285

Query: 358 ---SYVQSGQS--------------------------------DVVVASSIVDMYAKCER 382
              +YV+  +S                                D  + ++++  Y+KC  
Sbjct: 286 MRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTA 345

Query: 383 IDNAKQVFNSI-ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           + +A ++F  I  + +VV W  +++ +       EA  LF +M+ +G+ PN  ++ SVIL
Sbjct: 346 MLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTY-SVIL 404

Query: 442 --------------------------------GFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
                                            +++ G++ EA  +F  +       +++
Sbjct: 405 TALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGID----DKDIV 460

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV-ASLRNGRAIHGY 528
            W+ +++G  Q      AI  F E+ + GIKP+  T +  L+ C    AS+  G+  HG+
Sbjct: 461 AWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGF 520

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
            I+  L     + ++L+ MYAK GNI  A+ VF     K+L  +N+MISGYA HG A++A
Sbjct: 521 AIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKA 580

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L +FK ++++ +  D +TF  +  AC+HAGLV EG + F  M  D ++ P+ EH  C+V+
Sbjct: 581 LDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVD 640

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           L SR G L++A++VI  MP    + I  ++L+ C    +TEL    +E ++ ++P++   
Sbjct: 641 LYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAA 700

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YV LSN YA SG W E ++VR +M E+ ++K PG SWI++  + + F+A DRSHP  ++I
Sbjct: 701 YVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQI 760

Query: 769 YATLALLGMHVR 780
           Y  L  L   ++
Sbjct: 761 YMKLEDLSTRLK 772



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/517 (24%), Positives = 230/517 (44%), Gaps = 92/517 (17%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L  A  +FD    R+  ++ S++ G+ ++G  +EA R+F  +   G+E      +S+L  
Sbjct: 43  LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKV 102

Query: 293 SANLDALDE--GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA L   DE  G+Q H   +  G   D  +G+S+++ Y K    +D   VF  M ER++V
Sbjct: 103 SATL--CDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVV 160

Query: 351 TWNLLIASYVQSGQSDVV------------------------------------------ 368
           TW  LI+ Y ++  +D V                                          
Sbjct: 161 TWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVV 220

Query: 369 ----------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                     V++S++++Y KC  +  A+ +F+   ++ VV WN++++ YA  G   EA 
Sbjct: 221 VKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEAL 280

Query: 419 RLFYQMQLEGISPNIISWNSVI---------------------LGFLRNGQMNEA----- 452
            +FY M+L  +  +  S+ SVI                      GFL +  +  A     
Sbjct: 281 GMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAY 340

Query: 453 ------KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
                  D     + +G   N+++WT +ISG  QN    EA+  F EM   G++P+  T 
Sbjct: 341 SKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTY 400

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
           +  L+A   ++       +H  +++ +    + + T+L+D Y K G + +A +VF     
Sbjct: 401 SVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDD 456

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           K++  ++AM++GYA  G    A+ +F  L + GI P+  TF++ILN C+         + 
Sbjct: 457 KDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQ 516

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
           F G     ++  S+     ++ + ++ GN++ A  V 
Sbjct: 517 FHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVF 553


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  362 bits (929), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 221/678 (32%), Positives = 347/678 (51%), Gaps = 74/678 (10%)

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
           R++    +F+ +  +    + ++A+   +D A  +F  L+ K V SW AI+         
Sbjct: 4   RLIPYRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRP 63

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
            +A   F +M E                   + W G    V GYV               
Sbjct: 64  AEAQKLFDKMPERNT----------------ISWNGL---VSGYV--------------- 89

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
                K G + EARKVFD M  RNVV+W SM+ GYVQ GL +EA  +F+ M  + V    
Sbjct: 90  -----KNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV---- 140

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           VS T +L        +DE ++   +  +     D V  +++I      G L +A  +F  
Sbjct: 141 VSWTVMLGGLIEDGRVDEARRLFDMIPVK----DVVASTNMIGGLCSEGRLSEAREIFDE 196

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           M +R++V W  +I+ Y  + + DV                  A+++F  +  ++ V W  
Sbjct: 197 MPQRNVVAWTSMISGYAMNNKVDV------------------ARKLFEVMPDKNEVTWTA 238

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           +L  Y   GR  EA+ LF  M ++ ++    + N +I+GF  NG++ +A+ +F QM+   
Sbjct: 239 MLKGYTRSGRINEAAELFKAMPVKPVA----ACNGMIMGFGLNGEVGKARWVFDQMK--- 291

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
            + +  TW+ LI    +     EA+  F  M   G++P+  +I   LS C  +ASL +GR
Sbjct: 292 -EKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGR 350

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
            +H  L+R    L   + + L+ MY KCG++   KRVFD   SK++ ++N++I+GYA HG
Sbjct: 351 QVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHG 410

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
              +AL +F  +   G  PD ITF  +L+AC + G V EGLE+F  M S +QV    EH+
Sbjct: 411 FGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHY 470

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
            C+V+LL R G L+EA+ +I  MP + DA + G+LLS C      +LAE  ++ LLQLEP
Sbjct: 471 ACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEP 530

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV-ACDRSH 762
            + G Y+ LSN YA+  RW +V+++R  M+ + + K+PGCSWI++  ++H+F      SH
Sbjct: 531 SSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASH 590

Query: 763 PKTEEIYATLALLGMHVR 780
           P+ E I   L  LG  +R
Sbjct: 591 PEHEMIMKKLEKLGASLR 608



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 119/490 (24%), Positives = 212/490 (43%), Gaps = 79/490 (16%)

Query: 44  YKSYFH--------QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDM 95
           Y+SYF         QIS  ++  QI  A ++  +++ +        +  ++ G  + +  
Sbjct: 8   YRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTS----WNAIVAGYFHNKRP 63

Query: 96  YTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
              Q++  ++ +      RN      LV  Y K   +  A ++F ++  +NV SW +++ 
Sbjct: 64  AEAQKLFDKMPE------RNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVR 117

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
              + GL ++A + F  M E  V     +L  +++          GR      L   FD 
Sbjct: 118 GYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIED---------GRVDEARRL---FDM 165

Query: 216 C----VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
                V  ++++I      G L EAR++FD M  RNVVAW SMI GY  N   + A ++F
Sbjct: 166 IPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLF 225

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEGKQ------AHAVAVINGMELDNVLGSSII 325
             M     +   V+ T++L        ++E  +         VA  NGM    ++G    
Sbjct: 226 EVMP----DKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGM----IMG---- 273

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------QSDVVVAS-- 371
             +   G +  A  VF +M E+D  TW+ LI  Y + G            Q + V  +  
Sbjct: 274 --FGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFP 331

Query: 372 SIVDMYAKC---ERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQM 424
           SI+ + + C     +D+ +QV + ++      D+ + + L+  Y   G      R+F + 
Sbjct: 332 SIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRF 391

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
                S +I+ WNS+I G+ ++G   +A ++F +M S G  P+ IT+  ++S        
Sbjct: 392 S----SKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKV 447

Query: 485 NEAILFFQEM 494
            E +  F+ M
Sbjct: 448 KEGLEIFESM 457



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 4/160 (2%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+Q+H++++++   F  + YV + L+  Y KC  L    R+F R   K++  W +II   
Sbjct: 349 GRQVHSQLVRS--HFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGY 406

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-HGYVLKVGFDGC 216
            + G  EKAL  F EM   G +PD      VL ACG  G V  G  +      K   D  
Sbjct: 407 AQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQK 466

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
               + ++D+ G+ G L EA  + + M +  + + W +++
Sbjct: 467 TEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALL 506


>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 784

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 217/729 (29%), Positives = 370/729 (50%), Gaps = 88/729 (12%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           Q H+ I+  G+  + N +  TKL+ FYA       ++ LF  +  K++F W +II  +  
Sbjct: 58  QFHSLIITTGN--SNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFS 115

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVF 218
            G  ++A   +++M+     P+ F +P V+  C  L     G  +HG   K+G F G   
Sbjct: 116 NGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSA 175

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           + SS I MY KCG +E A  +F  +  ++VV W ++IVGYVQN  +   ++  +EM   G
Sbjct: 176 IGSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIG 235

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
             P   ++ S   A  +LDAL EGK  H +A+ NG     V+ S+I++ YS+ G  E+A 
Sbjct: 236 GTPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAY 295

Query: 339 VVFSRMVERDIVTWNLLIASYVQSG------------QSDVVVASSIV------------ 374
             F ++ ++D+++W  +IA + + G            Q+  ++   IV            
Sbjct: 296 RCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSD 355

Query: 375 ----------------------------DMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                                        MY K   +  A ++F+S   +    W+T++ 
Sbjct: 356 RIFEGKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSF-HKSSEDWSTMIL 414

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK------------- 453
            Y+++G+  +      +M L G  P++ S  SVI    + G +N  +             
Sbjct: 415 GYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIE 474

Query: 454 ---------DMF---------LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
                    DM+          ++    +Q ++I+W TLIS   Q+    EAI+ F +M+
Sbjct: 475 NVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMV 534

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
           +  + P+  T    LSAC  +ASL  G  IH Y+  +       I T+L+DMYAKCG + 
Sbjct: 535 KEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELE 594

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
            ++++F+ +  +++ ++N MIS Y MHG    A+ +F+ +++  I P++ TF ++L+AC+
Sbjct: 595 TSRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACN 654

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           H G V EG  LF  M   + ++PS++H+  +++LL R G+L+ A  ++L+MP  PD  + 
Sbjct: 655 HTGHVLEGRHLFDRM-QKYGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDGTVW 713

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
           GSLLS C   NE E+   ++ + ++ +P N G Y+ LS+ Y+  GRW+EV +VRD+MK++
Sbjct: 714 GSLLSACKIHNEFEVGVRLARYAIESDPKNDGYYIILSDLYSCLGRWDEVEKVRDMMKKR 773

Query: 736 GLRKNPGCS 744
           G+ K  G S
Sbjct: 774 GVEKRAGWS 782



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 211/427 (49%), Gaps = 20/427 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+  SK   + E + L  EM+         +   +L G      ++ G+  HARILK   
Sbjct: 313 IAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQC- 371

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
             A +      L+  Y K   L  A+++F     K+   W+ +I     +G  EK +   
Sbjct: 372 -CALSGITHNALLSMYCKFGHLGTANKIFHSFH-KSSEDWSTMILGYSNMGQKEKCISFL 429

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EM   G  PD   L +V+ +C  +G +  GR++H Y +K      V VA+SL+DMYGK 
Sbjct: 430 REMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKS 489

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +    ++F   + R+V++WN++I  Y Q+G+  EAI +F +M  E V P +V+   +L
Sbjct: 490 GHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVL 549

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA A+L +LDEG++ H     NG E +  + +++I+ Y+K G LE +  +F+   ERD++
Sbjct: 550 SACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELETSRKLFNSTEERDVI 609

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
            WN++I++Y   G   V  A  I  +  +     NA+               +LL+A   
Sbjct: 610 LWNVMISNYGMHGH--VESAMEIFQLMEESNIKPNAQTFL------------SLLSACNH 655

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
            G   E   LF +MQ  GI P++  + S+I    R+G +  A+ + L M    + P+   
Sbjct: 656 TGHVLEGRHLFDRMQKYGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMP---ITPDGTV 712

Query: 471 WTTLISG 477
           W +L+S 
Sbjct: 713 WGSLLSA 719


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score =  362 bits (928), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 231/788 (29%), Positives = 390/788 (49%), Gaps = 98/788 (12%)

Query: 56  KEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARN 115
           K K IR  V LL +   R  Q     Y   LQ CV  + +  G+++H  +      F  +
Sbjct: 31  KGKSIRGGVQLLGK---RGVQANLNFYARRLQECVQAKSLAEGKKVHDHM--RSAQFEPD 85

Query: 116 EYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
            Y+   L+  Y+KC +++ A+ +F  +  K+V SW A+I      G  ++A+  F +MQ 
Sbjct: 86  IYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQR 145

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
           +G+ P+     ++L AC     + FG  +H ++ K G++  V V+++LI+MY KCG LE 
Sbjct: 146 EGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLEL 205

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           ARKVF+ M  RNVV+W +MI GYVQ+G ++EA  +F ++   G +P +VS  SIL A  N
Sbjct: 206 ARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTN 265

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
            + L++G + HA     G+E + ++G+++I+ Y++ G L +A  VF  +   + V+WN +
Sbjct: 266 PNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAM 325

Query: 356 IASY---------------VQSG------------------------------------Q 364
           IA Y                Q G                                    +
Sbjct: 326 IAGYGEGFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWE 385

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
           +DV VA++++ MYAKC  ++ A++VFN +  ++ V WN  +A     G   EA ++F QM
Sbjct: 386 ADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQM 445

Query: 425 QLEGISPNIISW-----------------------------------NSVILGFLRNGQM 449
           + + + P+ +++                                   N++I  + R G++
Sbjct: 446 RRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKL 505

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
            +A+++F +++    + +L +W  +I+   Q+     A   F +    G K    T    
Sbjct: 506 ADAREVFYRIR----RRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINV 561

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L A  ++  L  GR IHG + +  L     I+T+L+ MY+KCG++  A  VF     K++
Sbjct: 562 LRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDV 621

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +NAM++ Y       +AL LF+ ++ +G++PDS T+T++LNAC+  G +  G + F  
Sbjct: 622 VCWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKK-FHT 680

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
              +  ++    H+ C+V  L R   L EA   I  +  + DA +  SLL  C   +   
Sbjct: 681 QLKEAAMETDTRHYACMVAALGRASLLKEAEEFIEEISSESDALMWESLLVACRIHHNVG 740

Query: 690 LAEYISEHLLQLEPD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           LAE   EHLL ++   +P     L N YAA+GRW +VS ++  M+E GL     C+ I++
Sbjct: 741 LAETAVEHLLDVKAQSSPAVCEQLMNIYAAAGRWEDVSVIKATMREAGLLAPKSCT-IEV 799

Query: 749 GEELHVFV 756
             E H F+
Sbjct: 800 NSEFHTFM 807


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  361 bits (927), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 227/734 (30%), Positives = 376/734 (51%), Gaps = 67/734 (9%)

Query: 92  KRDMYTGQQIH----ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV 147
           K+ +Y G+Q       R+  N     +N      +V  +AK   +  A +LF ++  +N+
Sbjct: 22  KKIIYLGKQGKIDEAKRVFSN--VIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQRNL 79

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGY 207
            SW  +I       + E+A   F  M E     DNF    ++      G +   R +   
Sbjct: 80  VSWNTMIAGYLHNNMVEEAHKLFDLMAE----RDNFSWALMITCYTRKGMLEKARELFEL 135

Query: 208 VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267
           V       C    +++I  Y K G  ++A KVF+ M  +++V++NSM+ GY QNG    A
Sbjct: 136 VPDKLDTAC---WNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLA 192

Query: 268 IRVFYEMTLEGV---------------------------EPTRVSVTSILSASANLDALD 300
           ++ F  M    V                           +P  VS  ++L   A      
Sbjct: 193 MKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFAR----- 247

Query: 301 EGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
            GK   A  + + M   NV+  +++I  Y +   +++A  +F     +D V+W  +I  Y
Sbjct: 248 HGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGY 307

Query: 360 VQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
           V+ G+              DV   ++++    +  RID A QVF+ +  RD + WN+++A
Sbjct: 308 VRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIA 367

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
            Y   GR  EA  LF QM ++    N +SWN++I G+ + G+M+ A ++F   +++GV+ 
Sbjct: 368 GYCQSGRMSEALNLFRQMPVK----NAVSWNTMISGYAQAGEMDRATEIF---EAMGVR- 419

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
           N+I+W +LI+G  QN    +A+     M + G KP  +T  C+LS+C ++A+L+ G+ +H
Sbjct: 420 NVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLH 479

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
             +++        +  +L+ MYAKCG +  A++VF      +L  +N++ISGYA++G A 
Sbjct: 480 ELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYAN 539

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
           EA   F+ +  +G  PD +TF  +L+ACSHAGL N+G++LF  M     ++P  EH+ C+
Sbjct: 540 EAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCL 599

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           V+LL R G L+EA  ++  M    +A + GSLL+ C      EL +  +  LL+LEP N 
Sbjct: 600 VDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKNMELGKIAALRLLELEPHNA 659

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTE 766
            NY+ LSN +A +GRW +V ++R +M+E+   K PGCSWI++  ++  FV+ D    +TE
Sbjct: 660 SNYITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCSWIEVQNQIQNFVSDDPGKLRTE 719

Query: 767 EIYATLALLGMHVR 780
            I   L  L  H+R
Sbjct: 720 SIKIILNTLSAHMR 733



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 16/202 (7%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L  C     +  G+Q+H  ILK+G  +  + +V   L+  YAKC  +  A ++F  +   
Sbjct: 463 LSSCANLAALQVGKQLHELILKSG--YINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGV 520

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           ++ SW ++I      G + +A   F +M  +G  PD      +L AC   G    G  + 
Sbjct: 521 DLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLF 580

Query: 206 GYVLKVGF--DGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG 262
             +++ GF  +      S L+D+ G+ G LEEA  +  GM +  N   W S++       
Sbjct: 581 KCMIE-GFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLA------ 633

Query: 263 LNEEAIRVFYEMTLEGVEPTRV 284
               A RV   M L  +   R+
Sbjct: 634 ----ACRVHKNMELGKIAALRL 651


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  361 bits (927), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 207/589 (35%), Positives = 331/589 (56%), Gaps = 39/589 (6%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN---EEAIRVFYEM 274
           F+AS LI  Y K   L EA KVFD ++ +N+ +WN+M++GY  + ++      +      
Sbjct: 70  FLASKLITFYSKSNHLYEAHKVFDKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPS 129

Query: 275 TLEGVEPTRVSVTSILSASANL--DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
               ++P   ++T +L A + L  D++   K+     + +G + D  + +++I +YS+  
Sbjct: 130 YSLTLKPDNFTITCVLKALSVLFPDSI-LAKEVQCFVLRHGFDSDIFVVNALITYYSRCD 188

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------QSDVVVASSIV 374
               A ++F RM +RDIV+WN +IA Y Q G                  + + V   S++
Sbjct: 189 EYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVL 248

Query: 375 DMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
              A+   +    +V   II R    DV   N+L+  YA  G    A  LF +M     +
Sbjct: 249 QACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMS----N 304

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL- 489
            + +++ S++ G++ +G +++A D+F +M++    P L TW  +ISGL QN+C NE IL 
Sbjct: 305 KDEVTYGSIVSGYMTHGFVDKAMDLFREMKN----PRLSTWNAVISGLVQNNC-NEGILE 359

Query: 490 FFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
             QEM E G +P+  T++  L   +  ++L+ G+AIH Y IR+       + TS++D YA
Sbjct: 360 LVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYA 419

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           K G +  A+ VFD S  + L V+ A+IS Y+ HG A  AL LF ++   G  PD +TFT 
Sbjct: 420 KLGFLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTA 479

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669
           +L AC+H+G+VNE  ++F  MF  +  +P +EH+ C+V +LSR G L EA   I  MP +
Sbjct: 480 VLAACAHSGMVNEAWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPIE 539

Query: 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR 729
           P+A + G+LL+    S + EL +++ +HL  +EP+N GNYV ++N Y+ +GRW E   +R
Sbjct: 540 PNAKVWGALLNGVSVSGDVELGKFVCDHLFNMEPENTGNYVIMANLYSQAGRWEEAENIR 599

Query: 730 DIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL-ALLGM 777
           + MK+ GL+K PG SWI+    L  F+A D S  ++EEIY  L  LLG+
Sbjct: 600 EKMKKIGLKKIPGTSWIETSGGLRSFIARDVSSERSEEIYGMLEGLLGL 648



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 202/419 (48%), Gaps = 52/419 (12%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D    +++   +L++G  F  + +V   L+ +Y++CD   +A  LF R+  +++ SW ++
Sbjct: 154 DSILAKEVQCFVLRHG--FDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSM 211

Query: 154 IGLNCRVGLSEKALIGFVEMQED-GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212
           I    + G  E     + +M +  G+ P+   + +VL+AC     + FG  VH ++++  
Sbjct: 212 IAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERK 271

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV----------------------- 249
            +  V   +SLI +Y KCG L+ AR++F+ M  ++ V                       
Sbjct: 272 VEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFR 331

Query: 250 --------AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
                    WN++I G VQN  NE  + +  EM   G  P  V+++SIL   +    L  
Sbjct: 332 EMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKG 391

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           GK  HA A+ NG   +  + +SII+ Y+K+G L  A+ VF +  +R ++ W  +I++Y  
Sbjct: 392 GKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAYSA 451

Query: 362 SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
            G      A++ + ++   + + N  Q        D V +  +LAA A  G   EA ++F
Sbjct: 452 HGD-----ANAALRLFG--DMLSNGTQ-------PDPVTFTAVLAACAHSGMVNEAWKIF 497

Query: 422 YQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
            +M L+ G  P +  +  ++    R G ++EA +   +M    ++PN   W  L++G++
Sbjct: 498 DEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMP---IEPNAKVWGALLNGVS 553



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 205/477 (42%), Gaps = 86/477 (18%)

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           L + KQ HA  V++ +  DN L S +I FYSK   L +A  VF ++++++I +WN ++  
Sbjct: 50  LRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKILDKNIFSWNAMLIG 109

Query: 359 YVQSGQ--SDVVVASSIVDMYAKCERIDN-------------------AKQVFNSIILR- 396
           Y         + + SS++  Y+   + DN                   AK+V    +LR 
Sbjct: 110 YSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDSILAKEV-QCFVLRH 168

Query: 397 ----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
               D+ + N L+  Y+     G A  LF +M       +I+SWNS+I G+ + G   + 
Sbjct: 169 GFDSDIFVVNALITYYSRCDEYGIARILFDRMH----DRDIVSWNSMIAGYSQGGFYEDC 224

Query: 453 KDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           K+++ +M  S G++PN +                                   T+   L 
Sbjct: 225 KELYRKMLDSTGLRPNGV-----------------------------------TVVSVLQ 249

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           AC     L  G  +H ++I   + +      SL+ +YAKCG++  A+ +F+   +K+   
Sbjct: 250 ACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVT 309

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV----NEGLELF 627
           Y +++SGY  HG   +A+ LF+ ++    +P   T+  ++     +GLV    NEG+   
Sbjct: 310 YGSIVSGYMTHGFVDKAMDLFREMK----NPRLSTWNAVI-----SGLVQNNCNEGILEL 360

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH---IIGSLLSTCVK 684
           V    +   +P+      ++   S   NL     +      +  AH   +  S++    K
Sbjct: 361 VQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAK 420

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
                 A+++ +   Q +  +   + A+ +AY+A G  N   ++   M   G + +P
Sbjct: 421 LGFLRGAQWVFD---QSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDP 474



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 165/386 (42%), Gaps = 66/386 (17%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNG---DFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +LQ C    D+  G ++H  I++     D  A N      L+  YAKC +LD A  LF  
Sbjct: 247 VLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHN-----SLIGLYAKCGSLDYARELFNE 301

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGF------------------------------- 170
           +  K+  ++ +I+      G  +KA+  F                               
Sbjct: 302 MSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELV 361

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EMQE G  P+   L ++L        +  G+A+H Y ++ G+   ++VA+S+ID Y K 
Sbjct: 362 QEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKL 421

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L  A+ VFD    R+++ W ++I  Y  +G    A+R+F +M   G +P  V+ T++L
Sbjct: 422 GFLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVL 481

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL-------EDAEVVFSR 343
           +A A+   ++E     A  + + M L       + ++   VG+L       E AE +   
Sbjct: 482 AACAHSGMVNE-----AWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKM 536

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
            +E +   W  L+     SG  DV +   + D     E     +   N +I+ ++     
Sbjct: 537 PIEPNAKVWGALLNGVSVSG--DVELGKFVCDHLFNME----PENTGNYVIMANL----- 585

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGI 429
               Y+  GR  EA  +  +M+  G+
Sbjct: 586 ----YSQAGRWEEAENIREKMKKIGL 607



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C+D   LR  + +H  ++   L     + + L+  Y+K  ++++A +VFD    K +  +
Sbjct: 44  CSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKILDKNIFSW 103

Query: 573 NAMISGYAMHGLAVEA---LALFKNLQQKGIDPDSITFTNILNACS 615
           NAM+ GY++H + V     L+         + PD+ T T +L A S
Sbjct: 104 NAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALS 149


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  361 bits (927), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 227/774 (29%), Positives = 372/774 (48%), Gaps = 92/774 (11%)

Query: 43   LYKSYFHQISSLSKEKQIREAV----DLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
            L+ ++F+Q     ++     A+    D LT +      +    Y  LLQGCV + D   G
Sbjct: 388  LHSAFFNQAPPRRRDLAANAALQWLEDELTSLAFPWPGVDSYAYARLLQGCVARGDARGG 447

Query: 99   QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
            + +H  ++++G     + +    L+  Y K      A R+F  L  +N+ S+  ++  + 
Sbjct: 448  RAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHA 507

Query: 159  RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
              G  E+A   F  ++ +G   + FVL  VLK   A+  +G    VH    K+G D   F
Sbjct: 508  LRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAF 567

Query: 219  VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
            V S+LID Y  CG + +AR+VFDG++ ++ VAW +M+  Y +N   E  +++F +M +  
Sbjct: 568  VGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAV 627

Query: 279  VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
             +    ++TS+L A+  L ++  GK  HA               S+   Y          
Sbjct: 628  SKLNPFALTSVLRAAVCLSSVVLGKGIHAC--------------SVKTLYD--------- 664

Query: 339  VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
                   ER                     V  +++DMYAKC  I++A+  F  +   DV
Sbjct: 665  ------TERH--------------------VYGALLDMYAKCGNIEDARLAFEMVTNDDV 698

Query: 399  VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LG------ 442
            +LW+ +++ YA   ++ +A  LF +M    +SPN  S +SV+          LG      
Sbjct: 699  ILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNH 758

Query: 443  -------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
                               + +   M  + ++F  ++ +    N ++W T+I G +++  
Sbjct: 759  AIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDV----NEVSWNTIIVGYSKSGF 814

Query: 484  GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
            G  A+  F+EM    +  +  T +  L AC   AS+ +   +H  + +      T +  S
Sbjct: 815  GEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNS 874

Query: 544  LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
            L+D YAKCG I  A+ +F+     +L  +NA+ISGYA+HG A  A  LF  + +  I  +
Sbjct: 875  LIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKAN 934

Query: 604  SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
             ITF  +L+ C   GLV++GL LF  M  DH ++PSMEH+ C+V LL R G L++AL  I
Sbjct: 935  DITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFI 994

Query: 664  LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
              +P  P A +  +LLS+C+     EL  + +E +L++EP +   YV LSN Y+A+G  +
Sbjct: 995  GDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLD 1054

Query: 724  EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGM 777
            +V+  R  M+  G+RK PG SW++I  E+H F      HP    I A L  L +
Sbjct: 1055 QVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNL 1108


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  361 bits (927), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 197/585 (33%), Positives = 315/585 (53%), Gaps = 26/585 (4%)

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           +A   I +Y   GDL+ AR +FD +   ++  W  +I    ++G + EAI+ + +   + 
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 279 -VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            VEP ++ + S+  A A+L  +   K+ H  A+  G   D +LG+++I+ Y K    E A
Sbjct: 73  CVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGA 132

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKC 380
            +VF  M  RD+++W  + + YV  G                 + + V  SSI+      
Sbjct: 133 RLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDL 192

Query: 381 ERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           + + + ++V   ++      +V + + L+  YA      +A  +F  M       + +SW
Sbjct: 193 KDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRR----DTVSW 248

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           N +I  +  N +  +   +F +M S GV  N  +W  +I G  QN    +A+     M  
Sbjct: 249 NVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQN 308

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
           +G KP+  TIT  L ACT++ SLR G+ IHGY+ RH         T+LV MYAKCG++  
Sbjct: 309 SGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLEL 368

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           ++RVF +   ++   +N MI   +MHG   EAL LF+ +   G+ P+S+TFT +L+ CSH
Sbjct: 369 SRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSH 428

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
           + LV+EGL +F  M  DH V+P  +H  C+V++LSR G L+EA   I  MP +P A   G
Sbjct: 429 SRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWG 488

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +LL  C      EL    +  L ++E DNPGNYV LSN   ++  W+E S+ R +M+++G
Sbjct: 489 ALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRG 548

Query: 737 LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
           + KNPGCSWIQ+   +H FV  D+S+ +++EIY  L  +G  +R+
Sbjct: 549 VTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRI 593



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 231/486 (47%), Gaps = 55/486 (11%)

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ-E 175
           ++  K +  Y+    L  A  LF ++   ++ +W  +I    + G S +A+  + + + +
Sbjct: 12  HLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHK 71

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
           + V PD  +L +V KAC +L  V   + VH   ++ GF   V + ++LIDMYGKC   E 
Sbjct: 72  NCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEG 131

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           AR VF+GM  R+V++W SM   YV  GL  EA+  F +M L G  P  V+V+SIL A  +
Sbjct: 132 ARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTD 191

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L  L  G++ H   V NGM  +  + S+++N Y+    +  A++VF  M  RD V+WN+L
Sbjct: 192 LKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVL 251

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL----WNTLLAAYADL 411
           I +Y                +  +CE+      VF  ++   V L    WN ++      
Sbjct: 252 ITAYF---------------LNKECEK---GLSVFGRMMSEGVGLNYASWNAVIGGCMQN 293

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEA---KDMFLQ----- 458
           GR+ +A  +  +MQ  G  PN I+  SV+     L  LR G+       +  F Q     
Sbjct: 294 GRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTT 353

Query: 459 ------------------MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
                             + S+  + + ++W T+I   + +  G EA+L F+EM+++G++
Sbjct: 354 TALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVR 413

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS-LVDMYAKCGNIHQAKR 559
           P++ T T  LS C+    +  G  I   + R     P     S +VD+ ++ G + +A  
Sbjct: 414 PNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYE 473

Query: 560 VFDISP 565
                P
Sbjct: 474 FIKKMP 479



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 125/511 (24%), Positives = 222/511 (43%), Gaps = 93/511 (18%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPE--IYGELLQGCVYKRDMYTGQQIHARILKN 108
           IS+L+K  +  EA+    + + +N  + P+  +   + + C   RD+   +++H   ++ 
Sbjct: 49  ISALTKHGRSLEAIQYYNDFRHKNC-VEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRF 107

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G  F  +  +   L+  Y KC   + A  +F  +  ++V SW ++       GL  +AL 
Sbjct: 108 G--FCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALG 165

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F +M  +G  P++  + ++L AC  L  +  GR VHG+V++ G  G VFV+S+L++MY 
Sbjct: 166 AFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYA 225

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGY------------------------------ 258
            C  + +A+ VFD M  R+ V+WN +I  Y                              
Sbjct: 226 SCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNA 285

Query: 259 -----VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
                +QNG  E+A+ V   M   G +P ++++TS+L A  NL++L  GKQ H     + 
Sbjct: 286 VIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHW 345

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373
              D    ++++  Y+K G LE +  VFS M +RD V+WN +I +    G  +       
Sbjct: 346 FFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGE------- 398

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
                                                     EA  LF +M   G+ PN 
Sbjct: 399 ------------------------------------------EALLLFREMVDSGVRPNS 416

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
           +++  V+ G   +  ++E   +F  M +   V+P+    + ++  L++     EA  F +
Sbjct: 417 VTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIK 476

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGR 523
           +M    I+P+       L  C    ++  GR
Sbjct: 477 KM---PIEPTAGAWGALLGGCRVYKNVELGR 504



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 12/220 (5%)

Query: 44  YKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHA 103
           Y S+   I    +  +  +A+++L+ M+   F+        +L  C     +  G+QIH 
Sbjct: 280 YASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHG 339

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
            I ++  +F ++    T LV  YAKC  L+++ R+F  +  ++  SW  +I      G  
Sbjct: 340 YIFRH--WFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNG 397

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGAL-----GWVGFGRAVHGYVLKVGFDGCVF 218
           E+AL+ F EM + GV P++     VL  C        G + F      + ++   D    
Sbjct: 398 EEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADH--- 454

Query: 219 VASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVG 257
             S ++D+  + G LEEA +    M I     AW +++ G
Sbjct: 455 -HSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGG 493



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           LP  +    + +Y+  G++ +A+ +FD  P  +LP +  +IS    HG ++EA+  + + 
Sbjct: 9   LPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDF 68

Query: 596 QQKG-IDPDSITFTNILNACS 615
           + K  ++PD +   ++  AC+
Sbjct: 69  RHKNCVEPDKLLLLSVAKACA 89


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  361 bits (926), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 194/612 (31%), Positives = 328/612 (53%), Gaps = 20/612 (3%)

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  +  +G   + FV   VLK   ++ W   GR VHG VLKVG+    F+ ++LID Y  
Sbjct: 34  FARLHGEGHELNPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSV 93

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
            G +  AR+VFD + ++++V+W  MI  Y +N    EA+  F +M + G +P   +   +
Sbjct: 94  SGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGV 153

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           L A   L   D GK  H   +    E D  +G  ++  Y++ G  +DA   F  M + D+
Sbjct: 154 LKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDV 213

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
           + W+ +I+ + QSGQS+       ++++ +  R         + ++ +   ++++L A A
Sbjct: 214 IPWSFMISRFAQSGQSE-----KALEIFCQMRR---------AFVIPNQFTFSSVLQASA 259

Query: 410 DLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
           D+  S + S+  +   L+ G+S ++   N+++  + + G + ++ ++F  +       N 
Sbjct: 260 DI-ESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALS----DRND 314

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           ++W T+I    Q   G  A+  F  ML   ++ +  T +  L AC  +A+L  G  +H  
Sbjct: 315 VSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCL 374

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
             +        +  +L+DMYAKCG+I  A+ +FD+   ++   +NA+I GY+MHGL VEA
Sbjct: 375 TAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEA 434

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           + +F  +++    PD +TF  +L+ACS+ G ++EG + F  M  D+ ++P MEH+ C+V 
Sbjct: 435 IKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVW 494

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           L+ R GNLD+A++ I  +P +P   I  +LL  CV  N+ EL    ++ +L+LEP +  +
Sbjct: 495 LMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEAS 554

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           +V LSN YA + RW  V+ VR  MK KG++K PG SWI+    +H F   D SH   + I
Sbjct: 555 HVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLI 614

Query: 769 YATLALLGMHVR 780
              L  L M  R
Sbjct: 615 NGMLEFLNMKTR 626



 Score =  209 bits (531), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 135/531 (25%), Positives = 252/531 (47%), Gaps = 58/531 (10%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I   ++  +  EA +L   +     ++ P ++  +L+  V       G+ +H  +
Sbjct: 13  SFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEWAELGRIVHGCV 72

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LK G  +  N ++ T L+  Y+    + +A  +F  +  K++ SW  +I          +
Sbjct: 73  LKVG--YGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSE 130

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  F +M+  G  P+NF    VLKAC  L     G+ VH  VLK  ++  ++V   L++
Sbjct: 131 ALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLE 190

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y +CGD ++A + F  M   +V+ W+ MI  + Q+G +E+A+ +F +M    V P + +
Sbjct: 191 LYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFT 250

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
            +S+L ASA++++LD  K  H  A+  G+  D  + ++++  Y+K G +E +  +F  + 
Sbjct: 251 FSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALS 310

Query: 346 ERDIVTWNLLIASYVQSGQ----------------------------------------- 364
           +R+ V+WN +I SYVQ G                                          
Sbjct: 311 DRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQ 370

Query: 365 -----------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                       DV V ++++DMYAKC  I +A+ +F+ + LRD V WN ++  Y+  G 
Sbjct: 371 VHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGL 430

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWT 472
             EA ++F  M+     P+ +++  V+      G+++E K  F  M Q  G++P +  +T
Sbjct: 431 GVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYT 490

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
            ++  + ++   ++A+ F +++     +PS       L AC     +  GR
Sbjct: 491 CMVWLMGRSGNLDQAVKFIEDI---PFEPSVMIWRALLGACVIHNDVELGR 538



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 173/405 (42%), Gaps = 86/405 (21%)

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQ---------------------------------- 364
           +VF  M ER+ V++  LI  Y QS +                                  
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 365 ------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                             S+  + ++++D Y+    +  A++VF+ I  +D+V W  ++A
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVI---LGFLRNG-----------QMNEA 452
           +YA+     EA   F QM++ G  PN  ++  V+   LG L+N            + N  
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLG-LQNFDAGKTVHCSVLKTNYE 179

Query: 453 KDMFLQM----------------QSLGVQP--NLITWTTLISGLTQNSCGNEAILFFQEM 494
           +D+++ +                ++ G  P  ++I W+ +IS   Q+    +A+  F +M
Sbjct: 180 RDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQM 239

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
               + P+  T +  L A  D+ SL   + IHG+ ++  L     +  +L+  YAKCG I
Sbjct: 240 RRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCI 299

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
            Q+  +F+    +    +N +I  Y   G    AL+LF N+ +  +    +T+++IL AC
Sbjct: 300 EQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRAC 359

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           +    +  GL++   + +       +     ++++ ++CG++ +A
Sbjct: 360 ATLAALELGLQVHC-LTAKTIYGQDVAVGNALIDMYAKCGSIKDA 403


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  361 bits (926), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 244/747 (32%), Positives = 392/747 (52%), Gaps = 40/747 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRN--FQIGPEIY--GELLQGCVYKRD--MYTGQQIHAR 104
           IS  S+      A DL + M+     F   P  Y  G L+       D  +   +Q+ AR
Sbjct: 248 ISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLAR 307

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           + K+G  F ++ YV + LV  +A+    D A  +F ++ V+NV S   ++    +    E
Sbjct: 308 VEKSG--FLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGE 365

Query: 165 KALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWV----GFGRAVHGYVLKVGF-DGCVF 218
            A   F EM++  G++ D++V+  +L A      +      GR VH +V++ G  D  V 
Sbjct: 366 AAAKVFHEMKDLVGINSDSYVV--LLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVA 423

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           + + L++MY K G + +A  VF+ M+ ++ V+WNS+I G  QN  +E+A   F+ M   G
Sbjct: 424 IGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTG 483

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
             P+  ++ S LS+ A+L  +  G+Q H   +  G++ D  + ++++  Y++ G   +  
Sbjct: 484 SMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECL 543

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
            VFS M E D V+WN +I +   S  S     S  V  + +  R            L  V
Sbjct: 544 KVFSLMPEYDQVSWNSVIGALSDSEAS----VSQAVKYFLQMMR--------GGWGLSRV 591

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFL 457
              N +L+A + L    E S   + + L+  +S +    N+++  + + G+MNE + +F 
Sbjct: 592 TFIN-ILSAVSSLSLH-EVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFA 649

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
           +M       + ++W ++ISG   N   ++A+     M++ G +  + T    LSAC  VA
Sbjct: 650 RMSE---TRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVA 706

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIV--TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +L  G  +H   IR   CL + +V  ++LVDMY+KCG I  A R F++ P + +  +N+M
Sbjct: 707 TLERGMEVHACGIR--ACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSM 764

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           ISGYA HG   +AL LF  +   G  PD +TF  +L+ACSH G V EG E F  M   ++
Sbjct: 765 ISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYR 824

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN--ETELAEY 693
           + P +EHF C+V+LL R G LDE    I +MP  P+  I  ++L  C ++N   TEL   
Sbjct: 825 LSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRR 884

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            +E LL+LEP N  NYV L+N YA+  +W +V++ R  MKE  ++K  GCSW+ + + +H
Sbjct: 885 AAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVH 944

Query: 754 VFVACDRSHPKTEEIYATLALLGMHVR 780
           VFVA D+ HP+ + IY  L  L   +R
Sbjct: 945 VFVAGDKLHPEKDLIYDKLRELNRKMR 971



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 143/544 (26%), Positives = 264/544 (48%), Gaps = 50/544 (9%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
            +++H + +K G  F  N ++   L+  Y +   L  A +LF  +  +N+ +WA +I   
Sbjct: 90  ARELHLQSIKYG--FVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 147

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG--FGRAVHGYVLKVGFDG 215
            + G  ++A   F +M   G  P+++   + L+AC   G  G   G  +HG + K  +  
Sbjct: 148 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGS 207

Query: 216 CVFVASSLIDMYGKCGD-LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
            V V + LI MYG C D   +AR VFDG+  RN ++WNS+I  Y + G    A  +F  M
Sbjct: 208 DVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSM 267

Query: 275 TLEGV----EPTRVSVTSILSASANLDALDEG----KQAHAVAVINGMELDNVLGSSIIN 326
             EG+    +P   +  S+++ + +  ++D G    +Q  A    +G   D  + S++++
Sbjct: 268 QKEGLGFSFKPNEYTFGSLITTACS--SVDFGLCVLEQMLARVEKSGFLQDLYVSSALVS 325

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNA 386
            +++ GL +DA+ +F +M  R++V+ N L+   V+  Q +                   A
Sbjct: 326 GFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEA------------------A 367

Query: 387 KQVFNSIILRDVVLWNT-----LLAAYADLGRSGEASRLFYQMQLE----GISPNIIS-W 436
            +VF+   ++D+V  N+     LL+A+++     E  R   ++       G++ N ++  
Sbjct: 368 AKVFHE--MKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIG 425

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           N ++  + ++G + +A  +F     L V+ + ++W +LISGL QN C  +A   F  M  
Sbjct: 426 NGLVNMYAKSGAIADACSVF----ELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRR 481

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
           TG  PS  T+   LS+C  +  +  G  IH   ++  L     +  +L+ +YA+ G   +
Sbjct: 482 TGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTE 541

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAV-EALALFKNLQQKGIDPDSITFTNILNACS 615
             +VF + P  +   +N++I   +    +V +A+  F  + + G     +TF NIL+A S
Sbjct: 542 CLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVS 601

Query: 616 HAGL 619
              L
Sbjct: 602 SLSL 605



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 232/487 (47%), Gaps = 46/487 (9%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
            R +H   +K GF G +F++++LI++Y + GDL  A+K+FD M  RN+V W  +I GY Q
Sbjct: 90  ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 149

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA--SANLDALDEGKQAHAVAVINGMELDN 318
           NG  +EA   F +M   G  P   +  S L A   +       G Q H +        D 
Sbjct: 150 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 209

Query: 319 VLGSSIINFY-SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
           V+ + +I+ Y S +    DA  VF  +  R+ ++WN +I+ Y + G      A S  D++
Sbjct: 210 VVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGD-----AVSAYDLF 264

Query: 378 AKCER------IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
           +  ++          +  F S+I        T   +  D G      ++  +++  G   
Sbjct: 265 SSMQKEGLGFSFKPNEYTFGSLI--------TTACSSVDFGLC-VLEQMLARVEKSGFLQ 315

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           ++   ++++ GF R G  ++AK++F QM   GV+ N+++   L+ GL +   G  A   F
Sbjct: 316 DLYVSSALVSGFARFGLTDDAKNIFEQM---GVR-NVVSMNGLMVGLVKQKQGEAAAKVF 371

Query: 492 QEMLE-TGIKPSTTTITCALSACTDVASL----RNGRAIHGYLIRHDLCL-PTPIVTSLV 545
            EM +  GI   +  +   LSA ++ + L    R GR +H ++IR  L      I   LV
Sbjct: 372 HEMKDLVGINSDSYVVL--LSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLV 429

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           +MYAK G I  A  VF++   K+   +N++ISG   +  + +A   F  +++ G  P + 
Sbjct: 430 NMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNF 489

Query: 606 TFTNILNACSHAGLVNEGLE-----LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
           T  + L++C+  G +  G +     L +G+ +D  V  ++      + L +  G   E L
Sbjct: 490 TLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNAL------LALYAETGCFTECL 543

Query: 661 RVILTMP 667
           +V   MP
Sbjct: 544 KVFSLMP 550



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 13/246 (5%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ S+   Y H        + + +A+DL+  M  +  ++    +  +L  C     +  G
Sbjct: 659 SWNSMISGYIHN-------ELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERG 711

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
            ++HA  ++       +  V + LV  Y+KC  +D ASR F  + ++NV+SW ++I    
Sbjct: 712 MEVHACGIRAC--LESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYA 769

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCV 217
           R G  EKAL  F  M  DG  PD+     VL AC  +G+V  G      + +V      V
Sbjct: 770 RHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRV 829

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQ-NGLNEEAIRVFYEMT 275
              S ++D+ G+ G L+E     + M  + NV+ W +++    + NG N E  R   EM 
Sbjct: 830 EHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEML 889

Query: 276 LEGVEP 281
           LE +EP
Sbjct: 890 LE-LEP 894


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 231/773 (29%), Positives = 376/773 (48%), Gaps = 89/773 (11%)

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA 152
           R +  G  IH+ I+K G  F  + ++   L+  Y KC  +  A +LF  +  ++V SW  
Sbjct: 29  RSVRDGICIHSPIIKMG--FQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTM 86

Query: 153 IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212
           ++    ++G  E+AL  F  M   G  P+ F L   L++C AL     G      V K G
Sbjct: 87  LMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSG 146

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
           FD    + S+LID Y KCG  +EA +VF+ M   ++V+W  M+  +V+ G   +A+++++
Sbjct: 147 FDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYH 206

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
            M   GV P   +   +L+AS+ L  L+ GK  HA  ++  +EL+ VL +++++ Y K  
Sbjct: 207 RMIQTGVAPNEFTFVKLLAASSFL-GLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQ 265

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQ--------------------------SG--- 363
            +EDA  V    +E D+  W  +I+ + Q                          SG   
Sbjct: 266 SIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILN 325

Query: 364 -----------------------QSDVVVASSIVDMYAKCER-IDNAKQVFNSIILRDVV 399
                                  ++DV V +S+VDMY KC   I++A + F  I   +V+
Sbjct: 326 ACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVI 385

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG----------------- 442
            W +L+A +++ G   E+ ++F  MQ  G+ PN  +  S ILG                 
Sbjct: 386 SWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTL-STILGACGTIKSLTQTRKLHGY 444

Query: 443 FLRNGQMNEAK---------------DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
            ++N   N+                 D    + S+    ++IT+T+L + + Q      A
Sbjct: 445 IIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMA 504

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
           +     M +  ++    ++   LSA   +  +  G+ +H Y ++  L     +   LVD+
Sbjct: 505 LNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDL 564

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           Y KCG IH A R F      +   +N +I G A +G    AL+ F++++  G++PD IT 
Sbjct: 565 YGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITC 624

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
             +L ACSH GLV+ GL+ F  M   H ++P ++H+ C+V+LL R G L+EA+ VI TMP
Sbjct: 625 LLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMP 684

Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
             PDA I  +LL  C       L E+++   L+L+P +P  YV L+N Y  SGR     +
Sbjct: 685 FKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEK 744

Query: 728 VRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            R +M+E+G+RKNPG SW++    +H+F A D SHP+  +I+  +  L    R
Sbjct: 745 TRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIESLIAQFR 797


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 239/774 (30%), Positives = 381/774 (49%), Gaps = 95/774 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y +LL      R +  G+++HARI K+     R  ++   LV  Y  C +L  A   F R
Sbjct: 1   YADLLDVVADSRSLDLGKEVHARICKSA--MDRGPFMGDLLVRMYVDCGSLIDAKACFDR 58

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA-LGWVGF 200
           + V++  +WA +I  + ++G SE+AL  F  MQ +GV+P N     VL AC A    +  
Sbjct: 59  MPVQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEE 118

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           GR +HG +     +   +V+++L+ MYGKC  +E+ARKVFDG+  + VV WN+MI  Y Q
Sbjct: 119 GRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQ 178

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
              +E+AI+VFY M LEGV+  R++   +L A + L  L+  K       +   E D++ 
Sbjct: 179 QDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLC--VEEREHDHLH 236

Query: 321 GSS----IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD---------- 366
            SS    ++NFY   G LE A   FSR    +++    +I  Y Q  + D          
Sbjct: 237 DSSFATALVNFYGSCGDLEQAFRAFSRH-RLELILATAMITQYTQRERWDEALELFKVML 295

Query: 367 ------------------------------------------VVVASSIVDMYAKCERID 384
                                                     V   +++++MY KC  ++
Sbjct: 296 LEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLE 355

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW-NSVIL-- 441
            A +VF S+  RDV+ WNT++AA+    +  EA  L + MQL+G+  + IS+ N++ L  
Sbjct: 356 EAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCA 415

Query: 442 --GFLRNGQM-----------------NEAKDMFLQMQSLGVQPNL---------ITWTT 473
               L  G+M                 N   DM+   +S      +         ++W  
Sbjct: 416 ASEALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKARDQVSWNA 475

Query: 474 LISGLT-QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           +I+    Q    +EA+L FQ+M   G  P   +   ALSAC   ASL  G+ +H  +   
Sbjct: 476 MITAYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRET 535

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
            L     +  ++++MYAK G++  A+++F   P  ++  +N MIS +A HG A + L  F
Sbjct: 536 GLESNMTVANAVLNMYAKSGSLVLARKMFGKMPLPDVISWNGMISAFAQHGHADQVLRFF 595

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH-QVKPSMEHFGCVVNLLS 651
           + +  +G  P+ +TF ++++ACSH GLV +G++LFV +  D   + P  EH+ C+V+L++
Sbjct: 596 RRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIA 655

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G LD A + I   P  PD  I  ++L       + E A   +EHL++L PD    YV 
Sbjct: 656 RAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYVV 715

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
           LSN Y   G+ +E +++R +M EK +RK P  S I +   +H F   D ++ +T
Sbjct: 716 LSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNART 769



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 216/462 (46%), Gaps = 54/462 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++ +++    +A+ +   M     +     +  +L  C   +D+   + +   + +   
Sbjct: 173 ITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREH 232

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +    T LV FY  C  L+ A R F R R++ + + A I     R    E AL  F
Sbjct: 233 DHLHDSSFATALVNFYGSCGDLEQAFRAFSRHRLELILATAMITQYTQRERWDE-ALELF 291

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M  +GV  D      VL AC     +  GR +HG++ ++ FD  V   ++LI+MYGKC
Sbjct: 292 KVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKC 351

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G LEEA +VF  M  R+V++WN++I  + Q+  + EA+ + + M L+GV+  ++S  + L
Sbjct: 352 GSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNAL 411

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
              A  +AL +G+  H+  V +G++ D +L ++I++ Y      +DA  VF  M  RD V
Sbjct: 412 PLCAASEALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKARDQV 471

Query: 351 TWNLLIASYVQSGQ------------------SDVV------------------------ 368
           +WN +I +Y    +                   DV+                        
Sbjct: 472 SWNAMITAYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDR 531

Query: 369 -----------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                      VA+++++MYAK   +  A+++F  + L DV+ WN +++A+A  G + + 
Sbjct: 532 IRETGLESNMTVANAVLNMYAKSGSLVLARKMFGKMPLPDVISWNGMISAFAQHGHADQV 591

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
            R F +M  EG  PN +++ SV+      G + +   +F+ +
Sbjct: 592 LRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSL 633


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 233/766 (30%), Positives = 383/766 (50%), Gaps = 88/766 (11%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
           I+  LL  C   + +   +Q+HA  + NG F  R+  +   L++ YAK         LF 
Sbjct: 56  IHINLLTLCSKVQSLLQTKQVHALGILNG-FLPRSVSLCASLILNYAKFQHPGSFCSLFN 114

Query: 141 RL--RVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW 197
           +     +  F W  +I   +     +      +  M   GV  D+   P VLK C     
Sbjct: 115 QTFQNCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFD 174

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           +  G  VHG V K+GFD  V+V ++L+ +YG CG L +AR++FD M  R+VV+WN++I  
Sbjct: 175 ICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGL 234

Query: 258 YVQNGLNEEAIRVFYEMTLEGV-EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
              NG   EA   ++ M L  V +P  VSV S+L  SA L+  +  ++ H  +V  G++ 
Sbjct: 235 LSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDS 294

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------- 363
                +++++ Y K G ++    VF+  VE++ V+WN +I      G             
Sbjct: 295 QVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMI 354

Query: 364 ---------------------------------------QSDVVVASSIVDMYAKCERID 384
                                                  ++D+ +A+S++DMYAK     
Sbjct: 355 DAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHST 414

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI---- 440
            A  +F+++  R++V WN ++A YA      EA R   QMQ  G  PN +++ +V+    
Sbjct: 415 EASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACA 474

Query: 441 -LGFLRNGQ-----------------MNEAKDMFLQMQSLGVQPNL--------ITWTTL 474
            LGFL  G+                  N   DM+ +   L    N+        +++  L
Sbjct: 475 RLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRKDEVSYNIL 534

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           I G ++     +++  F EM   G KP   +    +SAC ++A+L+ G+ +HG  +R+ L
Sbjct: 535 IIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHL 594

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
                +  SL+D Y KCG I  A R+F+    K++  +N MI GY M G    A+++F+ 
Sbjct: 595 YSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEA 654

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           ++   +  D +++  +L+ACSH GLV  G + F  M +  +++P+  H+ C+V+LL R G
Sbjct: 655 MRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLA-QRLEPTEMHYTCMVDLLGRAG 713

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            ++EA ++I  +P  PDA+I G+LL  C      EL    +EHL +L+P + G Y+ LSN
Sbjct: 714 FVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSN 773

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
            YA +GRW+E +++R++MK +G +KNPGCSW+QI +++H FVA +R
Sbjct: 774 IYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVAEER 819


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 197/584 (33%), Positives = 315/584 (53%), Gaps = 28/584 (4%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + VH  ++K      ++VA  LI  +  C  +  A  VF+ +   NV  +N++I  +VQN
Sbjct: 40  KEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQN 99

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
             + +A   F++M   G+     +   +L A      L   +  H      G   D  + 
Sbjct: 100 SQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVP 159

Query: 322 SSIINFYSKVGLL--EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           +S+I+ YSK GLL    A  +F  M E+D+V+WN +I   V++G                
Sbjct: 160 NSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGD--------------- 204

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              +  A+++F+ +  RD V WNT+L  Y   G   +A  LF +M       N++SW+++
Sbjct: 205 ---LGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMP----ERNVVSWSTM 257

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           + G+ + G M  A+ +F +M       NL+TWT +ISG  +     EA   + +M   G+
Sbjct: 258 VSGYCKTGDMEMARMLFDKMPF----KNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGL 313

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           KP   T+   L+AC +   L  G+ +H  + +  +     +  +LVDMYAKCG + +A  
Sbjct: 314 KPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALS 373

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           +F+    ++L  +N M+ G AMHG   +A+ LF  +QQ+G  PD +T   IL AC+HAG 
Sbjct: 374 IFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGF 433

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           V++GL  F  M  DH + P +EH+GC+++LL R G L+EA R++ +MP +P+  I G+LL
Sbjct: 434 VDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLL 493

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
             C   N   LAE + + L+ LE  +PGNY  LSN +AA+G WN V+ +R  MK  G++K
Sbjct: 494 GACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQK 553

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVS 783
             G S I++ +E+H F   D+SHP+T++IY  L  LG  ++ V+
Sbjct: 554 PSGASSIELDDEVHEFTVFDKSHPETDKIYQILVKLGQDLKQVA 597



 Score =  187 bits (474), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/490 (27%), Positives = 233/490 (47%), Gaps = 70/490 (14%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
            ++ E LQ      D    +++HA+I+K       + YV  KL+  ++ C  +++A  +F
Sbjct: 21  RLFEEKLQDLHKCTDFNHIKEVHAQIIKRN--LHNDLYVAPKLISAFSLCHQMNLAVNVF 78

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
            +++  NV  +  +I  + +   S KA   F +MQ++G+  DNF  P +LKAC   GW+ 
Sbjct: 79  NQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLP 138

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL--EEARKVFDGMIARNVVAWNSMIVG 257
             + +H +V K GF G +FV +SLID Y KCG L    A K+F  M  +++V+WNSMI G
Sbjct: 139 TVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGG 198

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
            V+ G    A ++F EM     E   VS  +IL        +  G+ + A  +   M   
Sbjct: 199 LVKAGDLGRARKLFDEMA----ERDAVSWNTILDGY-----VKAGEMSQAFNLFEKMPER 249

Query: 318 NVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------- 363
           NV+  S++++ Y K G +E A ++F +M  +++VTW ++I+ + + G             
Sbjct: 250 NVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQME 309

Query: 364 ---------------------------------------QSDVVVASSIVDMYAKCERID 384
                                                  +  V V++++VDMYAKC R+D
Sbjct: 310 AAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVD 369

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
            A  +FN + +RD+V WN +L   A  G   +A +LF +MQ EG  P+ ++  +++    
Sbjct: 370 KALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACT 429

Query: 445 RNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
             G +++    F  M+   G+ P++  +  +I  L +     EA    Q M    ++P+ 
Sbjct: 430 HAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSM---PMEPND 486

Query: 504 TTITCALSAC 513
                 L AC
Sbjct: 487 VIWGTLLGAC 496



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 179/367 (48%), Gaps = 26/367 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I  L K   +  A  L  EM  R+       +  +L G V   +M     +  ++
Sbjct: 191 SWNSMIGGLVKAGDLGRARKLFDEMAERD----AVSWNTILDGYVKAGEMSQAFNLFEKM 246

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            +      RN    + +V  Y K   +++A  LF ++  KN+ +W  II      GL+++
Sbjct: 247 PE------RNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKE 300

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A   + +M+  G+ PD+  L ++L AC   G +  G+ VH  + K+     V V+++L+D
Sbjct: 301 ATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVD 360

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY KCG +++A  +F+ M  R++V+WN M+ G   +G  E+AI++F +M  EG +P +V+
Sbjct: 361 MYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVT 420

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDA-E 338
           + +IL A  +   +D+G     ++  N ME D+ +   I      I+   + G LE+A  
Sbjct: 421 LIAILCACTHAGFVDQG-----LSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFR 475

Query: 339 VVFSRMVERDIVTW-NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
           +V S  +E + V W  LL A  V +    V +A  ++D     E+ D       S I   
Sbjct: 476 LVQSMPMEPNDVIWGTLLGACRVHNA---VPLAEKVLDRLITLEQSDPGNYSMLSNIFAA 532

Query: 398 VVLWNTL 404
              WN++
Sbjct: 533 AGDWNSV 539


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 222/772 (28%), Positives = 372/772 (48%), Gaps = 96/772 (12%)

Query: 43  LYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIH 102
           L+ S+  + +S   +    E + +  E+  +  +   +    +L+ C+   +++ G ++H
Sbjct: 97  LWNSFIEEFASFGGDSH--EILAVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVH 154

Query: 103 ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL 162
           A ++K G  F  + ++   L+  Y K   +D A+++F    ++  F W  I+  N R   
Sbjct: 155 ACLVKRG--FHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEK 212

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
            E AL  F  MQ       +  +  +L+ACG L  +  G+ +HGYV++ G      + +S
Sbjct: 213 WEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNS 272

Query: 223 LIDMYGKCGDLEEARKVFDGM-----------------------------------IARN 247
           ++ MY +   LE AR  FD                                     +  +
Sbjct: 273 IVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPD 332

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           ++ WNS++ G++  G  E  +  F  +   G +P   S+TS L A   L   + GK+ H 
Sbjct: 333 IITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHG 392

Query: 308 VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
             + + +E D  + +S+++ Y K   L+ AEVVF     ++I  WN LI+ Y   G    
Sbjct: 393 YIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKG---- 448

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
                           DNA+++ N +    I  D+V WN+L++ Y+  GRS EA  +  +
Sbjct: 449 --------------LFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINR 494

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           ++  G++PN++SW ++I G  +N    +A   F QMQ   V+PN                
Sbjct: 495 IKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPN---------------- 538

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
                              +TTI   L AC   + L+ G  IH + +RH       I T+
Sbjct: 539 -------------------STTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATA 579

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+DMY K G +  A  VF     K LP +N M+ GYA++G   E   LF  +++ G+ PD
Sbjct: 580 LIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPD 639

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
           +ITFT +L+ C ++GLV +G + F  M +D+ + P++EH+ C+V+LL + G LDEAL  I
Sbjct: 640 AITFTALLSGCKNSGLVMDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFI 699

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             +P   DA I G++L+ C    + ++AE  + +LL+LEP N  NY  + N Y+   RW 
Sbjct: 700 HAVPQKADASIWGAVLAACRLHKDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWG 759

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           +V ++++ M   G++     SWIQ+ + +HVF    +SHP+  EIY  L  L
Sbjct: 760 DVERLKESMTALGVKIPNVWSWIQVKQTIHVFSTEGKSHPEEGEIYFELYQL 811



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 165/670 (24%), Positives = 287/670 (42%), Gaps = 97/670 (14%)

Query: 76  QIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARN-EYVETKLVVFYAKCDALDV 134
           Q  P  +          R + + +++HA+I+K      RN   ++  ++  Y +    + 
Sbjct: 25  QFSPPKFSPFFHPFGEIRTLNSVRELHAQIIKMPK--KRNLVTMDGSMMRNYLQFGDFES 82

Query: 135 ASRLFCRLRVKNVFSWAAIIG-LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACG 193
           A+++F     +N   W + I       G S + L  F E+ + GV  D+  L  VLK C 
Sbjct: 83  ATKVFFVGFARNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVKFDSKALTVVLKICL 142

Query: 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
           AL  +  G  VH  ++K GF   V ++ +LI++Y K   ++ A +VFD    +    WN+
Sbjct: 143 ALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNT 202

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           +++  +++   E+A+ +F  M     + T  ++  +L A   L AL+EGKQ H   +  G
Sbjct: 203 IVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFG 262

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373
              +  + +SI++ YS+   LE A V F    + +  +WN +I+SY              
Sbjct: 263 RVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAV------------ 310

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
                                       N  L    DL +  E+S         G+ P+I
Sbjct: 311 ----------------------------NDCLNGAWDLLQEMESS---------GVKPDI 333

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
           I+WNS++ G L  G        F  +QS G +P              +SC          
Sbjct: 334 ITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKP--------------DSC---------- 369

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
                      +IT AL A   +     G+ IHGY++R  L     + TSLVD Y K   
Sbjct: 370 -----------SITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDC 418

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           + +A+ VF  + +K +  +N++ISGY   GL   A  L   ++++GI PD +T+ ++++ 
Sbjct: 419 LDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSG 478

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP---CDP 670
            S +G   E L + +       + P++  +  +++   +  N  +AL+    M      P
Sbjct: 479 YSMSGRSEEALAV-INRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKP 537

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEP---DNPGNYVALSNAYAASGRWNEVSQ 727
           ++  I +LL  C  S+  ++ E I  H   +     D+     AL + Y   G+     +
Sbjct: 538 NSTTICTLLRACAGSSLLKIGEEI--HCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHE 595

Query: 728 VRDIMKEKGL 737
           V   +KEK L
Sbjct: 596 VFRNIKEKTL 605


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 230/755 (30%), Positives = 378/755 (50%), Gaps = 107/755 (14%)

Query: 132 LDVASRLFCRLRVKNVFSW-AAIIGLNCRVGLSEKALIGFVEMQEDG--VSPDNFVLPNV 188
           L +A +LF  L   +   W   IIGL C     ++AL+ +  M+     V  D++   +V
Sbjct: 44  LHLARQLFDALPRPSTVLWNTIIIGLVCN-NFPDEALLFYSNMKSSSPQVKCDSYTYSSV 102

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL-------------EE 235
           LKAC     +  G+AVH + L+   +    V +SL++MY  C                + 
Sbjct: 103 LKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDL 162

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
            RKVFD M  R VVAWN++I  YV+     EA++ F  M   G++P+ VS  ++  A ++
Sbjct: 163 VRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSS 222

Query: 296 LDALDEGKQAHAVAVINGMELDNVLG--SSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           L         H + V  G E  N L   SS I  Y+++G LE A+ VF   +ER+   WN
Sbjct: 223 LGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWN 282

Query: 354 LLI--------------------------------------ASYVQSGQ----------- 364
            +I                                      AS++Q  +           
Sbjct: 283 TMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIK 342

Query: 365 ----SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
               + V V ++++ MY++C  ID + ++F+++  +DVV WNT+++A+   G + EA  L
Sbjct: 343 NVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALML 402

Query: 421 FYQMQLEGISPNIISWNSVILG----------------FLRNGQMNEAKDMFLQ------ 458
           FY+M+ + +  + ++  +++                   LRNG   E  D +L       
Sbjct: 403 FYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAKS 462

Query: 459 ----------MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
                      +S   + +  TW +++SG TQN   ++A L  ++ML+  + P+  T+  
Sbjct: 463 GLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLAS 522

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            L AC     +  G+ +HG+ IR+DL     + T+L+DMY+K G+I  A+ VF  +  K 
Sbjct: 523 ILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKS 582

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           +  Y+ MI GY  HG+   AL +F  +Q+ GI PD++T   +L+ACS+AGLV+EGL++F 
Sbjct: 583 IVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFE 642

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA-HIIGSLLSTCVKSNE 687
            M + + ++PS EHF CV ++L R G +D+A   ++ +    +   I GSLL+ C    +
Sbjct: 643 SMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQ 702

Query: 688 TELAEYISEHLLQLEPDN--PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
            EL + +++ LL++E  N   G +V LSN YA    W  V  VR  M+E+GL+K  G SW
Sbjct: 703 FELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSW 762

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           I+I   ++ F + DR HP++++IY+ L  L M ++
Sbjct: 763 IEIAGYMNHFASKDRKHPQSDQIYSMLEELLMEMK 797



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 217/440 (49%), Gaps = 30/440 (6%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D      +H  ++K G  +  + YV +  +  YA+   L+ A ++F     +N   W  +
Sbjct: 225 DFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTM 284

Query: 154 IGLNCRVGLS-EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212
           I    +   S E   + F  ++ +  + D   L + + A   L        +H +V+K  
Sbjct: 285 ISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNV 344

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
               V V ++LI MY +C  ++ + K+FD M  ++VV+WN+MI  +VQNGLN+EA+ +FY
Sbjct: 345 AVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFY 404

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
           EM  + +    V+VT++LSA+++L   D GKQ H   + NG++ +  + S +I+ Y+K G
Sbjct: 405 EMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEG-MDSYLIDMYAKSG 463

Query: 333 LLEDAEVVFSRMV--ERDIVTWNLLIASYVQSGQSD-----------------VVVASSI 373
           L+E A+ VF +    ERD  TWN +++ Y Q+G  D                 VV  +SI
Sbjct: 464 LIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASI 523

Query: 374 VDMYAKCERIDNAKQVFNSIILRD----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
           +        ID  KQ+    I  D    V +   L+  Y+  G    A  +F +      
Sbjct: 524 LPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKAN---- 579

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
             +I++++++ILG+ ++G    A  MF +MQ  G+QP+ +T   ++S  +     +E + 
Sbjct: 580 EKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQ 639

Query: 490 FFQEMLET-GIKPSTTTITC 508
            F+ M     I+PST    C
Sbjct: 640 IFESMRTVYNIQPSTEHFCC 659



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 203/386 (52%), Gaps = 28/386 (7%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
            +Q+HA ++KN         V   L+  Y++C+++D + ++F  +  K+V SW  +I   
Sbjct: 333 AEQLHAFVIKN--VAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAF 390

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG--FDG 215
            + GL+++AL+ F EM++  +  D+  +  +L A   L     G+  HGY+L+ G  F+G
Sbjct: 391 VQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEG 450

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIA--RNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
              + S LIDMY K G +E A+ VF+   +  R+   WNSM+ GY QNGL ++A  +  +
Sbjct: 451 ---MDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQ 507

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M  + V P  V++ SIL A      +D GKQ H  ++ N ++ +  + +++I+ YSK G 
Sbjct: 508 MLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGS 567

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           +  AE VFS+  E+ IVT++ +I  Y Q G  +     S + M+ + ++         S 
Sbjct: 568 IAHAENVFSKANEKSIVTYSTMILGYGQHGMGE-----SALFMFHRMQK---------SG 613

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWNSVILGFLRNGQMNEA 452
           I  D V    +L+A +  G   E  ++F  M+ +  I P+   +  V     R G++++A
Sbjct: 614 IQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKA 673

Query: 453 KDMFLQMQSLGVQPNLI-TWTTLISG 477
            +  +    LG + N++  W +L++ 
Sbjct: 674 YEFVI---GLGEKGNVMEIWGSLLAA 696



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 147/276 (53%), Gaps = 5/276 (1%)

Query: 31  TKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCV 90
           T  +  DN  E    S+   IS+  +     EA+ L  EMK ++  +       LL    
Sbjct: 367 TSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAAS 426

Query: 91  YKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVF 148
             R+   G+Q H  +L+NG  F   E +++ L+  YAK   ++ A  +F +     ++  
Sbjct: 427 DLRNPDIGKQTHGYLLRNGIQF---EGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQA 483

Query: 149 SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208
           +W +++    + GL ++A +   +M +  V P+   L ++L AC   G++ +G+ +HG+ 
Sbjct: 484 TWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFS 543

Query: 209 LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
           ++   D  VFVA++LIDMY K G +  A  VF     +++V +++MI+GY Q+G+ E A+
Sbjct: 544 IRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESAL 603

Query: 269 RVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            +F+ M   G++P  V++ ++LSA +    +DEG Q
Sbjct: 604 FMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQ 639



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 137/564 (24%), Positives = 244/564 (43%), Gaps = 79/564 (14%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG--VEPTRVSVTS 288
           G L  AR++FD +   + V WN++I+G V N   +EA+  +  M      V+    + +S
Sbjct: 42  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 101

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV-GLLEDAEV-------- 339
           +L A A+   L  GK  HA  +   M    ++ +S++N YS       D ++        
Sbjct: 102 VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCD 161

Query: 340 ----VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
               VF  M +R +V WN LIA YV++            + YA  E +     +    I 
Sbjct: 162 LVRKVFDTMRKRTVVAWNTLIAWYVRT------------ERYA--EAVKQFSMMMKIGIK 207

Query: 396 RDVVLWNTLLAAYADLGRSGEAS---RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
              V +  +  A++ LG    A+    +  ++  E ++ ++   +S I  +   G +  A
Sbjct: 208 PSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVN-DLYVVSSAIFMYAELGCLEFA 266

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI-LFFQEMLETGIKPSTTTITCALS 511
           K +F       ++ N   W T+IS   QN+   E I LFFQ +          T+  A+S
Sbjct: 267 KKVFDNC----LERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAIS 322

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           A + +        +H ++I++       ++ +L+ MY++C +I  + ++FD  P K++  
Sbjct: 323 AASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVS 382

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS-----------HAGLV 620
           +N MIS +  +GL  EAL LF  ++++ +  DS+T T +L+A S           H  L+
Sbjct: 383 WNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLL 442

Query: 621 NEGLELFVGMFS---------------DHQVKPSMEH------FGCVVNLLSRCGNLDEA 659
             G++ F GM S                +  + S  H      +  +++  ++ G +D+A
Sbjct: 443 RNGIQ-FEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQA 501

Query: 660 ---LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY---VALS 713
              LR +L     P+   + S+L  C  S   +  + +  H   +  D   N     AL 
Sbjct: 502 FLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQL--HGFSIRNDLDQNVFVATALI 559

Query: 714 NAYAASGRWNEVSQVRDIMKEKGL 737
           + Y+ SG       V     EK +
Sbjct: 560 DMYSKSGSIAHAENVFSKANEKSI 583


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 230/755 (30%), Positives = 378/755 (50%), Gaps = 107/755 (14%)

Query: 132 LDVASRLFCRLRVKNVFSW-AAIIGLNCRVGLSEKALIGFVEMQEDG--VSPDNFVLPNV 188
           L +A +LF  L   +   W   IIGL C     ++AL+ +  M+     V  D++   +V
Sbjct: 20  LHLARQLFDALPRPSTVLWNTIIIGLVCN-NFPDEALLFYSNMKSSSPQVKCDSYTYSSV 78

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL-------------EE 235
           LKAC     +  G+AVH + L+   +    V +SL++MY  C                + 
Sbjct: 79  LKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDL 138

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
            RKVFD M  R VVAWN++I  YV+     EA++ F  M   G++P+ VS  ++  A ++
Sbjct: 139 VRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSS 198

Query: 296 LDALDEGKQAHAVAVINGMELDNVLG--SSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           L         H + V  G E  N L   SS I  Y+++G LE A+ VF   +ER+   WN
Sbjct: 199 LGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWN 258

Query: 354 LLI--------------------------------------ASYVQSGQ----------- 364
            +I                                      AS++Q  +           
Sbjct: 259 TMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIK 318

Query: 365 ----SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
               + V V ++++ MY++C  ID + ++F+++  +DVV WNT+++A+   G + EA  L
Sbjct: 319 NVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALML 378

Query: 421 FYQMQLEGISPNIISWNSVILG----------------FLRNGQMNEAKDMFLQ------ 458
           FY+M+ + +  + ++  +++                   LRNG   E  D +L       
Sbjct: 379 FYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAKS 438

Query: 459 ----------MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
                      +S   + +  TW +++SG TQN   ++A L  ++ML+  + P+  T+  
Sbjct: 439 GLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLAS 498

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            L AC     +  G+ +HG+ IR+DL     + T+L+DMY+K G+I  A+ VF  +  K 
Sbjct: 499 ILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKS 558

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           +  Y+ MI GY  HG+   AL +F  +Q+ GI PD++T   +L+ACS+AGLV+EGL++F 
Sbjct: 559 IVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFE 618

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA-HIIGSLLSTCVKSNE 687
            M + + ++PS EHF CV ++L R G +D+A   ++ +    +   I GSLL+ C    +
Sbjct: 619 SMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQ 678

Query: 688 TELAEYISEHLLQLEPDN--PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
            EL + +++ LL++E  N   G +V LSN YA    W  V  VR  M+E+GL+K  G SW
Sbjct: 679 FELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSW 738

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           I+I   ++ F + DR HP++++IY+ L  L M ++
Sbjct: 739 IEIAGYMNHFASKDRKHPQSDQIYSMLEELLMEMK 773



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 217/440 (49%), Gaps = 30/440 (6%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D      +H  ++K G  +  + YV +  +  YA+   L+ A ++F     +N   W  +
Sbjct: 201 DFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTM 260

Query: 154 IGLNCRVGLS-EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212
           I    +   S E   + F  ++ +  + D   L + + A   L        +H +V+K  
Sbjct: 261 ISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNV 320

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
               V V ++LI MY +C  ++ + K+FD M  ++VV+WN+MI  +VQNGLN+EA+ +FY
Sbjct: 321 AVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFY 380

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
           EM  + +    V+VT++LSA+++L   D GKQ H   + NG++ +  + S +I+ Y+K G
Sbjct: 381 EMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEG-MDSYLIDMYAKSG 439

Query: 333 LLEDAEVVFSRMV--ERDIVTWNLLIASYVQSGQSD-----------------VVVASSI 373
           L+E A+ VF +    ERD  TWN +++ Y Q+G  D                 VV  +SI
Sbjct: 440 LIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASI 499

Query: 374 VDMYAKCERIDNAKQVFNSIILRD----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
           +        ID  KQ+    I  D    V +   L+  Y+  G    A  +F +      
Sbjct: 500 LPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKAN---- 555

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
             +I++++++ILG+ ++G    A  MF +MQ  G+QP+ +T   ++S  +     +E + 
Sbjct: 556 EKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQ 615

Query: 490 FFQEMLET-GIKPSTTTITC 508
            F+ M     I+PST    C
Sbjct: 616 IFESMRTVYNIQPSTEHFCC 635



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 203/386 (52%), Gaps = 28/386 (7%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
            +Q+HA ++KN         V   L+  Y++C+++D + ++F  +  K+V SW  +I   
Sbjct: 309 AEQLHAFVIKN--VAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAF 366

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG--FDG 215
            + GL+++AL+ F EM++  +  D+  +  +L A   L     G+  HGY+L+ G  F+G
Sbjct: 367 VQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEG 426

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIA--RNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
              + S LIDMY K G +E A+ VF+   +  R+   WNSM+ GY QNGL ++A  +  +
Sbjct: 427 ---MDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQ 483

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M  + V P  V++ SIL A      +D GKQ H  ++ N ++ +  + +++I+ YSK G 
Sbjct: 484 MLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGS 543

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           +  AE VFS+  E+ IVT++ +I  Y Q G  +     S + M+ + ++         S 
Sbjct: 544 IAHAENVFSKANEKSIVTYSTMILGYGQHGMGE-----SALFMFHRMQK---------SG 589

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWNSVILGFLRNGQMNEA 452
           I  D V    +L+A +  G   E  ++F  M+ +  I P+   +  V     R G++++A
Sbjct: 590 IQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKA 649

Query: 453 KDMFLQMQSLGVQPNLI-TWTTLISG 477
            +  +    LG + N++  W +L++ 
Sbjct: 650 YEFVI---GLGEKGNVMEIWGSLLAA 672



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 147/276 (53%), Gaps = 5/276 (1%)

Query: 31  TKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCV 90
           T  +  DN  E    S+   IS+  +     EA+ L  EMK ++  +       LL    
Sbjct: 343 TSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAAS 402

Query: 91  YKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVF 148
             R+   G+Q H  +L+NG  F   E +++ L+  YAK   ++ A  +F +     ++  
Sbjct: 403 DLRNPDIGKQTHGYLLRNGIQF---EGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQA 459

Query: 149 SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208
           +W +++    + GL ++A +   +M +  V P+   L ++L AC   G++ +G+ +HG+ 
Sbjct: 460 TWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFS 519

Query: 209 LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
           ++   D  VFVA++LIDMY K G +  A  VF     +++V +++MI+GY Q+G+ E A+
Sbjct: 520 IRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESAL 579

Query: 269 RVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            +F+ M   G++P  V++ ++LSA +    +DEG Q
Sbjct: 580 FMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQ 615



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 137/564 (24%), Positives = 244/564 (43%), Gaps = 79/564 (14%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG--VEPTRVSVTS 288
           G L  AR++FD +   + V WN++I+G V N   +EA+  +  M      V+    + +S
Sbjct: 18  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 77

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV-GLLEDAEV-------- 339
           +L A A+   L  GK  HA  +   M    ++ +S++N YS       D ++        
Sbjct: 78  VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCD 137

Query: 340 ----VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
               VF  M +R +V WN LIA YV++            + YA  E +     +    I 
Sbjct: 138 LVRKVFDTMRKRTVVAWNTLIAWYVRT------------ERYA--EAVKQFSMMMKIGIK 183

Query: 396 RDVVLWNTLLAAYADLGRSGEAS---RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
              V +  +  A++ LG    A+    +  ++  E ++ ++   +S I  +   G +  A
Sbjct: 184 PSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVN-DLYVVSSAIFMYAELGCLEFA 242

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI-LFFQEMLETGIKPSTTTITCALS 511
           K +F       ++ N   W T+IS   QN+   E I LFFQ +          T+  A+S
Sbjct: 243 KKVFDNC----LERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAIS 298

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           A + +        +H ++I++       ++ +L+ MY++C +I  + ++FD  P K++  
Sbjct: 299 AASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVS 358

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS-----------HAGLV 620
           +N MIS +  +GL  EAL LF  ++++ +  DS+T T +L+A S           H  L+
Sbjct: 359 WNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLL 418

Query: 621 NEGLELFVGMFS---------------DHQVKPSMEH------FGCVVNLLSRCGNLDEA 659
             G++ F GM S                +  + S  H      +  +++  ++ G +D+A
Sbjct: 419 RNGIQ-FEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQA 477

Query: 660 ---LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY---VALS 713
              LR +L     P+   + S+L  C  S   +  + +  H   +  D   N     AL 
Sbjct: 478 FLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQL--HGFSIRNDLDQNVFVATALI 535

Query: 714 NAYAASGRWNEVSQVRDIMKEKGL 737
           + Y+ SG       V     EK +
Sbjct: 536 DMYSKSGSIAHAENVFSKANEKSI 559


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 235/814 (28%), Positives = 384/814 (47%), Gaps = 97/814 (11%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYK-RD--MYTGQQIHARILKNGDFFARNEYVE 119
           A +LL  M+ R   +       L+  C  + RD  +  G  IHA   + G     N Y+ 
Sbjct: 25  AFELLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAG--LMGNVYIG 82

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           T L+  Y     +  A RLF  +  +NV SW A++      G  E+ L  + +M+ +GV 
Sbjct: 83  TALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMRREGVP 142

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
            +      V+  CG+L     G  V  +V+  G    V VA+SLI M+G  G +++A K+
Sbjct: 143 CNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKL 202

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD M   + ++ N+MI  Y   G+  +   VF +M   G+ P   ++ S++S  A+ D  
Sbjct: 203 FDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASADHF 262

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
             G   H++ + + ++    + ++++N YS  G L DAE +F  M  RD+++WN +I+SY
Sbjct: 263 SHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSY 322

Query: 360 VQ----------------------------------------------------SGQSDV 367
           VQ                                                    S Q ++
Sbjct: 323 VQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNL 382

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           +V +S++ MY KC  +++A++VF S+   DVV +N L+  YA L    +A ++F  ++  
Sbjct: 383 LVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSA 442

Query: 428 GISPNIISW------------------------------------NSVILGFLRNGQMNE 451
           GI PN I+                                     NS+I  + + G +  
Sbjct: 443 GIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLES 502

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           + ++F  +       N+++W  +I+   Q   G EA+  F +M   G K     +   LS
Sbjct: 503 STNIFNSI----TNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLS 558

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           +C  +ASL  G  +HG  ++  L   + +V + +DMY KCG +++  ++      +    
Sbjct: 559 SCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQQC 618

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           +N +ISGYA +G   EA   FK +   G  PD +TF  +L+ACSHAGLV++G++ +  M 
Sbjct: 619 WNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMA 678

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
           S   V P ++H  C+V+LL R G   EA R I  MP  P+  I  SLLS+       E+ 
Sbjct: 679 SSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPVLPNDLIWRSLLSSSRTHKNLEIG 738

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
              ++ LL+L+P +   YV LSN YA + RW +V ++R  MK   + K P CSW+++  E
Sbjct: 739 RKAAKKLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTININKRPACSWLKLKNE 798

Query: 752 LHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           +  F   DR H   E+IYA L  + + +R V  +
Sbjct: 799 VSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYI 832



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 162/668 (24%), Positives = 297/668 (44%), Gaps = 106/668 (15%)

Query: 149 SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG---WVGFGRAVH 205
           +W   +    R G    A      M+E GV    F L +++ AC   G    +  G A+H
Sbjct: 8   TWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIH 67

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
               + G  G V++ ++L+ +YG  G + +AR++F  M  RNVV+W +++V    NG  E
Sbjct: 68  ALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYLE 127

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           E +R + +M  EGV     +  +++S   +L+    G Q  +  +++G++    + +S+I
Sbjct: 128 ETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLI 187

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------------- 363
             +  +G ++DAE +F RM E D ++ N +I+ Y   G                      
Sbjct: 188 TMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDAT 247

Query: 364 ------------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
                                          S V V +++V+MY+   ++ +A+ +F ++
Sbjct: 248 TLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM 307

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI------------- 440
             RD++ WNT++++Y     S +A +   Q+      PN ++++S +             
Sbjct: 308 SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGK 367

Query: 441 --------LGFLRN-----------GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
                   L   RN           G+ N  +D     QS+    +++++  LI G    
Sbjct: 368 MVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH-DVVSYNVLIGGYAVL 426

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN-GRAIHGYLIRHDLCLPTPI 540
             G +A+  F  +   GIKP+  T+     + T    L N GR +H Y+IR        +
Sbjct: 427 EDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSDEYV 486

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
             SL+ MYAKCGN+  +  +F+   +K +  +NA+I+  A  G   EAL LF ++Q  G 
Sbjct: 487 ANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGN 546

Query: 601 DPDSITFTNILNACSHAGLVNEGLELF-----VGMFSD-HQVKPSMEHFGCVVNLLSRCG 654
             D +     L++C+    + EG++L       G+ SD + V  +M+ +G       +CG
Sbjct: 547 KLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYG-------KCG 599

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL--EPDNPGNYVAL 712
            ++E L+++      P      +L+S   K    + AE   + ++ +  +PD    +VAL
Sbjct: 600 KMNEMLQMVPDQAIRPQ-QCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYV-TFVAL 657

Query: 713 SNAYAASG 720
            +A + +G
Sbjct: 658 LSACSHAG 665


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/607 (32%), Positives = 343/607 (56%), Gaps = 33/607 (5%)

Query: 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
           A+ +V +G A       VG +        ++D+    G + +ARK+FDG   R+VV+W +
Sbjct: 19  AVAYVSYGSAA-ATSAAVGLERAQDPNRLIVDL-AAAGRVWDARKLFDGTPERDVVSWTA 76

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           ++  Y + G+  +A  +F            V+ T++LS  A    +DE     A  +   
Sbjct: 77  LVSAYARRGMLRDARSLFDR---SDARRNVVTWTALLSGYARAGLVDE-----AEVLFQR 128

Query: 314 MELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------- 363
           M   NV+  ++++  Y+  G   DA  +F RM  RD  +WN+L+A  V+SG         
Sbjct: 129 MPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRSGSVDKARELF 188

Query: 364 ----QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
               + DV+  +++VD  A+   +D A+ +F+S+  R+VV WN +++ Y    R  EA  
Sbjct: 189 GRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRNHRLDEALD 248

Query: 420 LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           LF +M       +I S N +I GF++N  +  A+ +F +M     + N++TWTT+++G  
Sbjct: 249 LFTKMP----HRDIASCNIMITGFIQNKDLKRARKLFDEMP----ERNVVTWTTMMNGYL 300

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           +      ++  F+ ML +GI+P+  T   AL AC+D+A+L  G+ +H  + +    + T 
Sbjct: 301 KGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTF 360

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           + ++L+++YAKCG +  A+++FD+S  K+L  +N +I+ YA HG+ +EA+ L++ +Q  G
Sbjct: 361 VGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNG 420

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
             P+ +T+  +L+ACSH+GLV+EGL++F  M +D  +    EH+ C+++L SR G LD+A
Sbjct: 421 YRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDA 480

Query: 660 LRVILTMPCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
            R+I  +   P    +  +LL  C       +    + +L+Q EPDN G Y  LSN YA+
Sbjct: 481 KRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQAEPDNAGTYTLLSNIYAS 540

Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMH 778
           +G+W E +++R  M  +GL+K PGCSWI++  ++HVFVA D+SH +++ IY  L  +   
Sbjct: 541 AGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQNIHYM 600

Query: 779 VRLVSKV 785
           +R+V  V
Sbjct: 601 MRIVGTV 607



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 128/549 (23%), Positives = 224/549 (40%), Gaps = 113/549 (20%)

Query: 103 ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL 162
           AR L +     RN    T L+  YA+   +D A  LF R+  +NV SW  ++      G 
Sbjct: 90  ARSLFDRSDARRNVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGR 149

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
           +  A   F  M        N +L  ++++    G V   R + G + +      V   ++
Sbjct: 150 AGDACALFDRMPVRDAGSWNILLAMLVRS----GSVDKARELFGRMPERD----VMAWTT 201

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           ++D   + G+++EAR +FD M  RNVV+WN+MI GY +N   +EA+ +F +M    +   
Sbjct: 202 MVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASC 261

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
            + +T  +    N D                                    L+ A  +F 
Sbjct: 262 NIMITGFIQ---NKD------------------------------------LKRARKLFD 282

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVA---------------------SSIVDMYAKCE 381
            M ER++VTW  ++  Y++  QS++ +                       +  D+   CE
Sbjct: 283 EMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCE 342

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
                + +  +    D  + + L+  YA  G  G A +LF  +  E    ++ISWN +I 
Sbjct: 343 GKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLF-DLSRE---KDLISWNGIIA 398

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
            +  +G   EA  ++ +MQ  G +PN +T+  L+S  + +   +E +  F+ M+      
Sbjct: 399 AYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMV------ 452

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV- 560
                              N R+I          +     T L+D+ ++ G +  AKR+ 
Sbjct: 453 -------------------NDRSI---------AVRDEHYTCLIDLCSRAGRLDDAKRLI 484

Query: 561 --FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI-TFTNILNACSHA 617
               I P+    V++A++ G   HG         +NL Q   +PD+  T+T + N  + A
Sbjct: 485 HYLKIKPASG-SVWSALLGGCNAHGNESIGNLAARNLIQA--EPDNAGTYTLLSNIYASA 541

Query: 618 GLVNEGLEL 626
           G   E  E+
Sbjct: 542 GKWKEAAEI 550



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 13/212 (6%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L  C     +  G+Q+H  I K    F  + +V + L+  YAKC  + +A +LF   R K
Sbjct: 331 LDACSDLATLCEGKQVHQMICKTA--FQVDTFVGSALMNVYAKCGEVGLARKLFDLSREK 388

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           ++ SW  II      G+  +A+  + +MQ +G  P++     +L AC   G V  G  + 
Sbjct: 389 DLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIF 448

Query: 206 GYVLKVGFDGCVFVA----SSLIDMYGKCGDLEEARKVFDGMIARNVVA--WNSMIVGYV 259
             ++    D  + V     + LID+  + G L++A+++   +  +      W++++ G  
Sbjct: 449 ESMVN---DRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCN 505

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
            +G   E+I       L   EP      ++LS
Sbjct: 506 AHG--NESIGNLAARNLIQAEPDNAGTYTLLS 535


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 175/491 (35%), Positives = 304/491 (61%), Gaps = 16/491 (3%)

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S+L   A+L ++ +G++ H++   N +E+D VLGS ++  Y   G L +   +F ++   
Sbjct: 106 SVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANE 165

Query: 348 DIVTWNLLIASYVQSG--QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
            +  WNLL+  Y + G  +  + +   + ++  +  R+++A+++F+ +  RDV+ WN+++
Sbjct: 166 KVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIR--RVESARKLFDELGDRDVISWNSMI 223

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG--------FLRNGQMNEAKDMFL 457
           + Y   G S +   LF QM L GI+ ++ +  SV L         + ++G +N A  +F 
Sbjct: 224 SGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVF- 282

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
             +++G + ++++WT++I+G  +    + ++  F EM +  + P++ T+ C L AC  +A
Sbjct: 283 --ETMG-ERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLA 339

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           +L  G+ IHG+++R+   L   +  +LVDMY KCG +  A+ +FD+ P K+L  +  MI+
Sbjct: 340 ALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIA 399

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
           GY MHG   EA+A F  ++  GI+PD ++F +IL ACSH+GL++EG   F  M ++  ++
Sbjct: 400 GYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIE 459

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
           P  EH+ C+V+LL+R GNL +A + I  MP +PDA I G+LL  C   ++ +LAE ++EH
Sbjct: 460 PKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEH 519

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVA 757
           + +LEP+N G YV L+N YA + +W EV ++R+ +  +GLRKNPGCSWI+I  ++H+FV 
Sbjct: 520 VFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVT 579

Query: 758 CDRSHPKTEEI 768
            D SHP   +I
Sbjct: 580 GDSSHPLANKI 590



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 215/455 (47%), Gaps = 46/455 (10%)

Query: 47  YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARIL 106
           Y  +I    +   +R A++L+ +    + ++    Y  +LQ C   + +  G++IH+ I+
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLEL--RTYCSVLQLCADLKSIQDGRRIHS-II 127

Query: 107 KNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA 166
           ++ D    +  + +KLV  Y  C  L    R+F ++  + VF W  ++    ++G   ++
Sbjct: 128 QSNDVEV-DGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRES 186

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV-----------------L 209
           L  F  M+E G+         +    G    + +   + GYV                 L
Sbjct: 187 LSLFKRMRELGIRRVESA-RKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLL 245

Query: 210 KVGFDGCVFVA------SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
            +  D    V+      + L+DMY K G+L  A +VF+ M  R+VV+W SMI GY + GL
Sbjct: 246 GINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGL 305

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
           ++ ++R+F+EM  E + P  +++  IL A A+L AL+ G++ H   + NG  LD  + ++
Sbjct: 306 SDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANA 365

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
           +++ Y K G L  A ++F  + E+D+V+W ++IA Y   G     +A+            
Sbjct: 366 LVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAA------------ 413

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILG 442
               ++ NS I  D V + ++L A +  G   E    F  M+    I P    +  ++  
Sbjct: 414 --FNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDL 471

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
             R G +++A   F++M  + ++P+   W  L+ G
Sbjct: 472 LARAGNLSKAYK-FIKM--MPIEPDATIWGALLCG 503



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 149/296 (50%), Gaps = 4/296 (1%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  Y+K   L+ A ++F  +  ++V SW ++I    R GLS+ ++  F EM+++ + P+
Sbjct: 265 LLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPN 324

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
           +  +  +L AC +L  +  G+ +HG++L+ GF     VA++L+DMY KCG L  AR +FD
Sbjct: 325 SITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFD 384

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            +  +++V+W  MI GY  +G   EAI  F EM   G+EP  VS  SIL A ++   LDE
Sbjct: 385 MIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDE 444

Query: 302 GKQAHAVAVIN-GMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASY 359
           G     +   N  +E  +   + I++  ++ G L  A      M +E D   W  L+   
Sbjct: 445 GWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGC 504

Query: 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                 DV +A  + +   + E  +    V  + I  +   W  +      +GR G
Sbjct: 505 --RIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRG 558



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 169/404 (41%), Gaps = 82/404 (20%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           +VL+ C  L  +  GR +H  +    V  DG   + S L+ MY  CGDL E R++FD + 
Sbjct: 106 SVLQLCADLKSIQDGRRIHSIIQSNDVEVDG--VLGSKLVFMYVTCGDLREGRRIFDKVA 163

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVF---YEMTLEGVEPTR-----------VSVTSIL 290
              V  WN ++ GY + G   E++ +F    E+ +  VE  R           +S  S++
Sbjct: 164 NEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMI 223

Query: 291 SASANLDALDEGKQAHAVAVINGMELD--------NVLGSSIINFYSKVGLLEDAEVVFS 342
           S   +    ++G       ++ G+  D          L + +++ YSK G L  A  VF 
Sbjct: 224 SGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFE 283

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVV---------------------------------- 368
            M ER +V+W  +IA Y + G SD+                                   
Sbjct: 284 TMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALER 343

Query: 369 ------------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
                             VA+++VDMY KC  +  A+ +F+ I  +D+V W  ++A Y  
Sbjct: 344 GQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGM 403

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLI 469
            G   EA   F +M+  GI P+ +S+ S++     +G ++E    F  M+ +  ++P   
Sbjct: 404 HGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSE 463

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +  ++  L +    ++A  F + M    I+P  T     L  C
Sbjct: 464 HYACIVDLLARAGNLSKAYKFIKMM---PIEPDATIWGALLCGC 504



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 107/197 (54%), Gaps = 23/197 (11%)

Query: 493 EMLETGIKPSTT--TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           E++    KP     T    L  C D+ S+++GR IH  +  +D+ +   + + LV MY  
Sbjct: 89  ELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVT 148

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI---------- 600
           CG++ + +R+FD   ++++ ++N +++GYA  G   E+L+LFK +++ GI          
Sbjct: 149 CGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLF 208

Query: 601 ----DPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHF--GCVVNL 649
               D D I++ ++++     GL  +GL+LF     +G+ +D     S+E     C++++
Sbjct: 209 DELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDM 268

Query: 650 LSRCGNLDEALRVILTM 666
            S+ GNL+ A++V  TM
Sbjct: 269 YSKSGNLNSAIQVFETM 285



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 10/217 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+  ++E     +V L  EM+  +          +L  C     +  GQ+IH  I
Sbjct: 292 SWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHI 351

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           L+NG  F+ + +V   LV  Y KC AL +A  LF  +  K++ SW  +I      G   +
Sbjct: 352 LRNG--FSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSE 409

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS--- 222
           A+  F EM+  G+ PD     ++L AC   G +  G    G+   +  + C+   S    
Sbjct: 410 AIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEG---WGFFNMMRNNCCIEPKSEHYA 466

Query: 223 -LIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVG 257
            ++D+  + G+L +A K    M I  +   W +++ G
Sbjct: 467 CIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 503


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 187/559 (33%), Positives = 316/559 (56%), Gaps = 53/559 (9%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           +F  ++L+  Y K G ++  +  FD M  R+ V++N+ I G+  N   +E++ +F  M  
Sbjct: 89  IFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQR 148

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           EG EPT  ++ SIL+ASA L  L  GKQ H   ++      N LG+  I           
Sbjct: 149 EGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVR-----NFLGNVFI----------- 192

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
                          WN                  ++ DMYAKC  I+ A+ +F+ +  +
Sbjct: 193 ---------------WN------------------ALTDMYAKCGEIEQARWLFDCLTKK 219

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           ++V WN +++ YA  G+  +   L +QM+L G  P+ ++ +++I  + + G+++EA+ +F
Sbjct: 220 NLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF 279

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            + +    + +++ WT ++ G  +N    +A+L F EML   I+P + T++  +S+C  +
Sbjct: 280 SEFK----EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKL 335

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           ASL +G+A+HG  I   L     + ++L+DMY+KCG I  A+ VF++ P++ +  +NAMI
Sbjct: 336 ASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMI 395

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
            G A +G   +AL LF+N+ Q+   PD++TF  IL+AC H   + +G E F  + + H +
Sbjct: 396 VGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGM 455

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
            P+++H+ C+VNLL R G +++A+ +I  M  DPD  I  +LLS C    +   AE  + 
Sbjct: 456 TPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAAR 515

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
           HL +L+P     Y+ LSN YA+ GRW +V+ VR++MK K ++K  G SWI+I  E+H F 
Sbjct: 516 HLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFT 575

Query: 757 ACDRSHPKTEEIYATLALL 775
           + DR+HP++E+IY  L +L
Sbjct: 576 SEDRTHPESEDIYEKLNML 594



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/572 (24%), Positives = 273/572 (47%), Gaps = 66/572 (11%)

Query: 54  LSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFA 113
           +  +  +R++VDLL    C       E Y +L+  CV   ++   +++ +  +++  F  
Sbjct: 1   MKAKSMLRQSVDLL----CSRSTATSEAYTQLVLECVRTNEINQAKRLQSH-MEHHLFQP 55

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG------------ 161
            + ++  +L+  YAK   L  A  LF ++  +++FSW A++    + G            
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRM 115

Query: 162 -------------------LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
                                +++L  F  MQ +G  P  + + ++L A   L  + +G+
Sbjct: 116 PFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGK 175

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            +HG ++   F G VF+ ++L DMY KCG++E+AR +FD +  +N+V+WN MI GY +NG
Sbjct: 176 QIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG 235

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             E+ I + ++M L G  P +V++++I++A      +DE ++  +       E D V  +
Sbjct: 236 QPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFS----EFKEKDIVCWT 291

Query: 323 SIINFYSKVGLLEDAEVVFSRM----VERDIVTWNLLIAS-----YVQSGQS-------- 365
           +++  Y+K G  EDA ++F+ M    +E D  T + +++S      +  GQ+        
Sbjct: 292 AMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILA 351

Query: 366 ----DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
               +++V+S+++DMY+KC  ID+A+ VFN +  R+VV WN ++   A  G   +A  LF
Sbjct: 352 GLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELF 411

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQ 480
             M  +   P+ +++  ++   L    + + ++ F  + +  G+ P L  +  +++ L +
Sbjct: 412 ENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGR 471

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
                +A+   + M      P     +  LS C+    + N      +L   D  +  P 
Sbjct: 472 TGRIEQAVALIKNMAH---DPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPY 528

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           +  L +MYA  G       V ++  SK +  +
Sbjct: 529 IM-LSNMYASMGRWKDVASVRNLMKSKNVKKF 559


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 211/649 (32%), Positives = 358/649 (55%), Gaps = 33/649 (5%)

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGY 207
           F + ++I      GL ++A++ F+ M   G+SPD +  P  L  C      G G  +HG 
Sbjct: 99  FMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGL 158

Query: 208 VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267
           ++K+ +   +FV +SL+  Y +CG+L+ ARKVFD M  RNVV+W SMI GY +    ++A
Sbjct: 159 IIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDA 218

Query: 268 IRVFYEMTL-EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIIN 326
           + +F+ M   E V P  V++  ++SA A L+ L+ G++ +     +G+E+++++ S++++
Sbjct: 219 VDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVD 278

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--QSDVVVASSIVDMYAKCERID 384
            Y K   ++ A+ +F      ++   N + ++YV+ G  +  + V + ++D   + +RI 
Sbjct: 279 MYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRIS 338

Query: 385 NAKQVFNSIILRDVVLW--------------------NTLLAAYADLGRSGEASRLFYQM 424
               + +   LR++ LW                    N L+  Y    R   A R+F +M
Sbjct: 339 MLSAISSCSQLRNI-LWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 397

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
                +  +++WNS++ G++ NG+++ A + F  M     + N+++W T+IS L Q +  
Sbjct: 398 S----NKTVVTWNSIVAGYIENGEVDAAWETFNTMP----EKNIVSWNTIISALVQENMY 449

Query: 485 NEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
            EAI  F  M  +  +     T+    SAC  + +L   + I+ Y+ ++ + L   + T+
Sbjct: 450 EEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTT 509

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           LVDM+++CG+   A  +F+   ++++  + A I   AM G    A+ LF  + ++G+ PD
Sbjct: 510 LVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPD 569

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            + F   L AC H GLV +G E+F  M   H V P   H+GC+V+LL R G L+EAL++I
Sbjct: 570 GVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLI 629

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             MP +P+  I  SLL+ C      E+A + +E +  L P+  G+YV LSN YA++GRWN
Sbjct: 630 KDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWN 689

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           ++++VR  MKEKGLRK PG S IQI  + H F + D SHP+  +I A L
Sbjct: 690 DMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAML 738



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 155/597 (25%), Positives = 274/597 (45%), Gaps = 94/597 (15%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGEL--LQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           +EA+ L   M   N  I P+ Y     L  C   RD   G QIH  I+K    +A++ +V
Sbjct: 115 KEAILLFIRMM--NSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMD--YAKDLFV 170

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDG 177
           +  LV FYA+C  LD A ++F  +  +NV SW ++I    R   ++ A+  F  M +++ 
Sbjct: 171 QNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDED 230

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           V P++  +  V+ AC  L  +  G  V+ ++   G +    + S+L+DMY KC  ++ A+
Sbjct: 231 VIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAK 290

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
           ++FD   A N+   N+M   YV+ GL +EA+ V   M   G+ P R+S+ S +S+ + L 
Sbjct: 291 RLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLR 350

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
            +  GK  H   + NG E  + + +++I+ Y K    + A  +F RM  + +VTWN ++A
Sbjct: 351 NILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVA 410

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
            Y+++G+                  +D A + FN++  +++V WNT+++A        EA
Sbjct: 411 GYIENGE------------------VDAAWETFNTMPEKNIVSWNTIISALVQENMYEEA 452

Query: 418 SRLFYQMQ-LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
             +F+ MQ  E ++ + ++  S+       G ++ AK ++  ++   +Q ++   TTL+ 
Sbjct: 453 IEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVD 512

Query: 477 GLTQNSCGN---------------------------------EAILFFQEMLETGIKPST 503
             ++  CG+                                  AI  F EM+E G+KP  
Sbjct: 513 MFSR--CGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDG 570

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
                AL+AC     ++ G+ I                             +  +++  +
Sbjct: 571 VVFIGALTACCHGGLVQQGKEI----------------------------FNSMEKLHGV 602

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           SP  E   Y  M+      GL  EAL L K++     +P+ + + ++L AC   G V
Sbjct: 603 SP--EDVHYGCMVDLLGRAGLLEEALQLIKDMP---TEPNDVIWNSLLAACRVQGNV 654



 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 222/471 (47%), Gaps = 63/471 (13%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGEL--LQGCVYKRDMYTGQQIHA 103
           S+   I   ++ +  ++AVDL   M  R+  + P     +  +  C    D+ TG++++ 
Sbjct: 201 SWTSMICGYARREFAKDAVDLFFRM-VRDEDVIPNSVTMVCVISACAKLEDLETGEKVYD 259

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
            I  +G     N+ + + LV  Y KC+A+D+A RLF      N+    A+     R GL+
Sbjct: 260 FIRDSG--IEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLT 317

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
           ++AL     M + G+ PD   + + + +C  L  + +G++ HGYVL+ GF+    + ++L
Sbjct: 318 KEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNAL 377

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG--------------------- 262
           IDMY KC   + A ++FD M  + VV WNS++ GY++NG                     
Sbjct: 378 IDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWN 437

Query: 263 ----------LNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
                     + EEAI VF+ M + E V    V++ SI SA  +L ALD  K  +     
Sbjct: 438 TIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEK 497

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVAS 371
           N ++LD  LG+++++ +S+ G  E A  +F+ +  RD+  W   I +   +G        
Sbjct: 498 NRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGN------- 550

Query: 372 SIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQ-L 426
                      ++ A ++FN +I +    D V++   L A    G   +   +F  M+ L
Sbjct: 551 -----------VERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKL 599

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            G+SP  + +  ++    R G + EA  +   M +   +PN + W +L++ 
Sbjct: 600 HGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPT---EPNDVIWNSLLAA 647


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 239/774 (30%), Positives = 380/774 (49%), Gaps = 95/774 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y +LL      R +  G+++HARI K+     R  ++   LV  Y  C +L  A   F R
Sbjct: 1   YADLLDVVADSRSLDLGKEVHARICKSA--MDRGPFMGDLLVRMYVDCGSLIDAKACFDR 58

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA-LGWVGF 200
           + V++  +WA +I  + ++G SE+AL  F  MQ +GV+P N     VL AC A    +  
Sbjct: 59  MPVQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEE 118

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           GR +HG +     +   +V+++L+ MYGKC  +E+ARKVFDG+  + VV WN+MI  Y Q
Sbjct: 119 GRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQ 178

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
              +E+AI+VFY M LEGV+  R++   +L A + L  L+  K       +   E D++ 
Sbjct: 179 QDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLC--VEEREHDHLH 236

Query: 321 GSS----IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD---------- 366
            SS    ++NFY   G LE A   FSR    +++    +I  Y Q  + D          
Sbjct: 237 DSSFATALVNFYGSCGDLEQAFRAFSRH-RLELILATAMITQYTQRERWDEALELFKVML 295

Query: 367 ------------------------------------------VVVASSIVDMYAKCERID 384
                                                     V   +++++MY KC  ++
Sbjct: 296 LEGVKLDRIACMAVLNACSGPRGLEEGRIIHGFMREIRFDRHVNAGNALINMYGKCGSLE 355

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW-NSVIL-- 441
            A +VF S+  RDV+ WNT++AA+    +  EA  L + MQL+G+  + IS+ N++ L  
Sbjct: 356 EAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCA 415

Query: 442 --GFLRNGQM-----------------NEAKDMFLQMQSLGVQPNL---------ITWTT 473
               L  G+M                 N   DM+   +S      +         ++W  
Sbjct: 416 TSEALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQVSWNA 475

Query: 474 LISGLT-QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           +I+    Q    +EA+L FQ+M   G  P   +   ALSAC   ASL  G+ +H  +   
Sbjct: 476 MITAYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRET 535

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
            L     +  ++++MYAK G +  A+++F   P  ++  +N MIS +A HG A + L  F
Sbjct: 536 GLESNMTVANAVLNMYAKSGTLVLARKMFGKMPLPDVISWNGMISAFAQHGHADQVLRFF 595

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH-QVKPSMEHFGCVVNLLS 651
           + +  +G  P+ +TF ++++ACSH GLV +G++LFV +  D   + P  EH+ C+V+L++
Sbjct: 596 RRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIA 655

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G LD A + I   P  PD  I  ++L       + E A   +EHL++L PD    YV 
Sbjct: 656 RAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYVV 715

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
           LSN Y   G+ +E +++R +M EK +RK P  S I +   +H F   D ++ +T
Sbjct: 716 LSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNART 769



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 216/462 (46%), Gaps = 54/462 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++ +++    +A+ +   M     +     +  +L  C   +D+   + +   + +   
Sbjct: 173 ITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREH 232

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +    T LV FY  C  L+ A R F R R++ + + A I     R    E AL  F
Sbjct: 233 DHLHDSSFATALVNFYGSCGDLEQAFRAFSRHRLELILATAMITQYTQRERWDE-ALELF 291

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M  +GV  D      VL AC     +  GR +HG++ ++ FD  V   ++LI+MYGKC
Sbjct: 292 KVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGFMREIRFDRHVNAGNALINMYGKC 351

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G LEEA +VF  M  R+V++WN++I  + Q+  + EA+ + + M L+GV+  ++S  + L
Sbjct: 352 GSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNAL 411

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
              A  +AL +G+  H+  V +G++ D +L ++I++ Y      +DA  VF  M  RD V
Sbjct: 412 PLCATSEALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQV 471

Query: 351 TWNLLIASYVQSGQ------------------SDVV------------------------ 368
           +WN +I +Y    +                   DV+                        
Sbjct: 472 SWNAMITAYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDR 531

Query: 369 -----------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                      VA+++++MYAK   +  A+++F  + L DV+ WN +++A+A  G + + 
Sbjct: 532 IRETGLESNMTVANAVLNMYAKSGTLVLARKMFGKMPLPDVISWNGMISAFAQHGHADQV 591

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
            R F +M  EG  PN +++ SV+      G + +   +F+ +
Sbjct: 592 LRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSL 633


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 221/740 (29%), Positives = 371/740 (50%), Gaps = 91/740 (12%)

Query: 127 AKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
           A    L  A  LF +   ++  S+ +++    R G +++A   F+ +Q  G+  D  +  
Sbjct: 42  ASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFS 101

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           +VLK    L    FGR +H   +K GF   V V +SL+D Y K  + ++ R VFD M  R
Sbjct: 102 SVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKER 161

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           NVV W ++I GY +N LNEE + +F  M  EG +P   +  + L   A       G Q H
Sbjct: 162 NVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVH 221

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA--------- 357
            V V NG++    + +S+IN Y K G +  A ++F +   + +VTWN +I+         
Sbjct: 222 TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDL 281

Query: 358 -----------SYVQSGQS--------------------------------DVVVASSIV 374
                      ++V+  +S                                D  + ++++
Sbjct: 282 EALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALM 341

Query: 375 DMYAKCERIDNAKQVFNSI-ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
             Y+KC  + +A ++F     L +VV W  +++ +       EA  LF +M+ +G+ PN 
Sbjct: 342 VAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNE 401

Query: 434 ISWNSVIL--------------------------------GFLRNGQMNEAKDMFLQMQS 461
            ++ SVIL                                 +++ G+++EA  +F  + +
Sbjct: 402 FTY-SVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDN 460

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT-DVASLR 520
                +++ W+ +++G  Q      AI  F E+ + G+KP+  T +  L+ C    AS+ 
Sbjct: 461 ----KDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMG 516

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            G+  HG+ I+  L     + ++L+ MYAK G+I  A+ VF     K+L  +N+MISGYA
Sbjct: 517 QGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYA 576

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            HG A++AL +FK ++++ +  DS+TF  +  AC+HAGLV EG + F  M  D ++ P+ 
Sbjct: 577 QHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTK 636

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EH  C+V+L SR G L++A++VI  MP    + I  ++L+ C    +TEL    +E ++ 
Sbjct: 637 EHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIA 696

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           + P++   YV LSN YA SG W E ++VR +M E+ ++K PG SWI++  + + F+A DR
Sbjct: 697 MIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDR 756

Query: 761 SHPKTEEIYATLALLGMHVR 780
           SHP  ++IY  L  L   ++
Sbjct: 757 SHPLKDQIYMKLEDLSTRLK 776


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 201/605 (33%), Positives = 318/605 (52%), Gaps = 54/605 (8%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLID---MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
           R +H  ++K G     +  S LI+   +      L  A  VF+ +   N++ WN+M  G+
Sbjct: 7   RMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 66

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             +     A++++  M   G+ P   +   +L + A   A  EG+Q H   +  G +LD 
Sbjct: 67  ALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDL 126

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
            + +S+I+ Y + G LEDA  VF     RD+V++  LI  Y   G               
Sbjct: 127 YVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGY-------------- 172

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
               I+NA+++F+ I ++DVV WN +++ YA+ G   EA  LF  M    + P+  +  +
Sbjct: 173 ----IENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 228

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNL------------------------------ 468
           V+    ++G +   + +   +   G   NL                              
Sbjct: 229 VVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKD 288

Query: 469 -ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
            I+W TLI G T  +   EA+L FQEML +G  P+  T+   L AC  + ++  GR IH 
Sbjct: 289 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 348

Query: 528 YLIRH--DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           Y+ +    +   + + TSL+DMYAKCG+I  A +VF+    K L  +NAMI G+AMHG A
Sbjct: 349 YIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRA 408

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
             +  +F  +++ GI+PD ITF  +L+ACSH+G+++ G  +F  M  D+++ P +EH+GC
Sbjct: 409 DASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGC 468

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           +++LL   G   EA  +I TM  +PD  I  SLL  C      EL E  +++L+++EP+N
Sbjct: 469 MIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPEN 528

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
           PG+YV LSN YA +GRWNEV+  R ++ +KG++K PGCS I+I   +H F+  D+ HP+ 
Sbjct: 529 PGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 588

Query: 766 EEIYA 770
            EIY 
Sbjct: 589 REIYG 593



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 144/544 (26%), Positives = 247/544 (45%), Gaps = 97/544 (17%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVF---YAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
           + IHA+++K G       Y  +KL+ F       D L  A  +F  ++  N+  W  +  
Sbjct: 7   RMIHAQMIKTG--LHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFR 64

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
            +        AL  +V M   G+ P+++  P +LK+C        G+ +HG+VLK+G D 
Sbjct: 65  GHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDL 124

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFD--------------------GMI----------- 244
            ++V +SLI MY + G LE+A KVFD                    G I           
Sbjct: 125 DLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIP 184

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            ++VV+WN+MI GY + G  +EA+ +F +M    V P   ++ +++SA A   +++ G+Q
Sbjct: 185 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 244

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY----- 359
            H+    +G   +  + +++I+ YSK G LE A  +F  +  +D+++WN LI  Y     
Sbjct: 245 VHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNL 304

Query: 360 -----------VQSGQS--DVVVAS----------------------------------- 371
                      ++SG++  DV + S                                   
Sbjct: 305 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLR 364

Query: 372 -SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
            S++DMYAKC  I+ A QVFNSI+ + +  WN ++  +A  GR+  +  +F +M+  GI 
Sbjct: 365 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIE 424

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
           P+ I++  ++     +G ++  + +F  M Q   + P L  +  +I  L  +    EA  
Sbjct: 425 PDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA-- 482

Query: 490 FFQEMLETGIKPSTTTITCA-LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
             +EM+ T        I C+ L AC    ++  G +    LI+ +   P   V  L ++Y
Sbjct: 483 --EEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVL-LSNIY 539

Query: 549 AKCG 552
           A  G
Sbjct: 540 ATAG 543



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/427 (28%), Positives = 207/427 (48%), Gaps = 57/427 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNG------------DFFARNEYVE------------- 119
           LL+ C   +    GQQIH  +LK G              + +N  +E             
Sbjct: 97  LLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRD 156

Query: 120 ----TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
               T L+  YA    ++ A ++F  + VK+V SW A+I      G  ++AL  F +M +
Sbjct: 157 VVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 216

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
             V PD   +  V+ AC   G +  GR VH ++   GF   + + ++LID+Y KCG+LE 
Sbjct: 217 TNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELET 276

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A  +F+G+  ++V++WN++I GY    L +EA+ +F EM   G  P  V++ SIL A A+
Sbjct: 277 ACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 336

Query: 296 LDALDEGKQAHAV--AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           L A+D G+  H      + G+   + L +S+I+ Y+K G +E A  VF+ ++ + + +WN
Sbjct: 337 LGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 396

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA----AYA 409
            +I  +   G++D     +  D++++  +        N I   D+     L A       
Sbjct: 397 AMIFGFAMHGRAD-----ASFDIFSRMRK--------NGIEPDDITFVGLLSACSHSGML 443

Query: 410 DLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
           DLGR      +F  M Q   ++P +  +  +I     +G   EA++M   M+   ++P+ 
Sbjct: 444 DLGR-----HIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTME---MEPDG 495

Query: 469 ITWTTLI 475
           + W +L+
Sbjct: 496 VIWCSLL 502



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 180/379 (47%), Gaps = 18/379 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++    +EA++L  +M   N +        ++  C     +  G+Q+H+ I
Sbjct: 190 SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWI 249

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             +G  F  N  +   L+  Y+KC  L+ A  LF  L  K+V SW  +IG    + L ++
Sbjct: 250 DDHG--FGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKE 307

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSL 223
           AL+ F EM   G +P++  + ++L AC  LG +  GR +H Y+ K   G      + +SL
Sbjct: 308 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSL 367

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           IDMY KCGD+E A +VF+ ++ +++ +WN+MI G+  +G  + +  +F  M   G+EP  
Sbjct: 368 IDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDD 427

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDA 337
           ++   +LSA ++   LD G+      +   M  D  +   +      I+     GL ++A
Sbjct: 428 ITFVGLLSACSHSGMLDLGRH-----IFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA 482

Query: 338 EVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           E + + M +E D V W  L+ +    G  +V +  S      K E  +    V  S I  
Sbjct: 483 EEMINTMEMEPDGVIWCSLLKACKMHG--NVELGESFAQNLIKIEPENPGSYVLLSNIYA 540

Query: 397 DVVLWNTLLAAYADLGRSG 415
               WN +    A L   G
Sbjct: 541 TAGRWNEVANTRALLNDKG 559


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/575 (33%), Positives = 320/575 (55%), Gaps = 67/575 (11%)

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           DG V   + +I    K G + EAR++FD M   +V+ W ++I GY++ G+ EEA R+F  
Sbjct: 64  DGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLF-- 121

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
                                  D +D  K               V  ++++  Y +   
Sbjct: 122 -----------------------DRVDAKKNV-------------VTWTAMVGGYIRSNK 145

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD-------------VVVASSIVDMYAKC 380
           + DAE +F+ M  +++V+WN +I  Y Q+G+ D             VV  ++++ M A+C
Sbjct: 146 ISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQC 205

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
            RI+ A+++F+ +  RDV+ W  ++A   D     EA  LF +M       ++ SWN++I
Sbjct: 206 GRIEEARRLFDRMPERDVISWTAMIAGLLD-----EALDLFERMP----ERDLPSWNTMI 256

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GI 499
            G ++NG +  A+ +F +M     + N+I+WTT+I+G  Q     EA+  F  ML T G 
Sbjct: 257 TGLIQNGDLRRARKLFNEMP----KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGA 312

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           KP+  T    L AC+++A L  G+ +H  + +      T +V++L++MY+KCG +  A++
Sbjct: 313 KPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARK 372

Query: 560 VFD--ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           +FD  ++  ++L  +N +I+ YA HG   EA+  FK +++ G  PD +T+  +L+ACSHA
Sbjct: 373 MFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHA 432

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           GLV EGL+ F  +  D  +    +H+ C+V+L  R G L EA   I  +   P A + G+
Sbjct: 433 GLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGA 492

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           LL+ C      ++ +  ++ LL++EP+N G Y+ LSN YA++G+W E ++VR  MK+KGL
Sbjct: 493 LLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGL 552

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           +K PGCSWI++G  +HVFV  D+SH +++ IY+ L
Sbjct: 553 KKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLL 587



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 98/174 (56%), Gaps = 3/174 (1%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLK 190
           L  A +LF  +  KNV SW  +I    + G SE+AL  F  M   +G  P+     +VL 
Sbjct: 265 LRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLG 324

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF-DGMIA-RNV 248
           AC  L  +G G+ VH  + K  +    FV S+LI+MY KCG+L  ARK+F DGM + R++
Sbjct: 325 ACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDL 384

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           V+WN +I  Y  +G  +EAI  F EM   G +P  V+   +LSA ++   ++EG
Sbjct: 385 VSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEG 438


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 220/691 (31%), Positives = 353/691 (51%), Gaps = 58/691 (8%)

Query: 127 AKCDALDVASR--LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
           A C A D+A+   L  R+  +N  SW  +I    R G   +AL  +  M ++G++P NF 
Sbjct: 85  AACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFT 144

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           L +VL ACGA+  +  GR  HG  +KVG DG  FV + L+ MY KCG + +A ++FDGM 
Sbjct: 145 LASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMP 204

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE--- 301
           + N V++ +M+ G  Q G  ++A+R+F  M+  G+    V+V+S+L A A   A D    
Sbjct: 205 SPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVA 264

Query: 302 -----GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
                 +  HA+ V  G   D  +G+S+++ Y+K   +++A  VF  +    IV+WN+LI
Sbjct: 265 RAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILI 324

Query: 357 ASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
             Y Q G                 + + V  S+++    K   + +A+ +F+ I    V 
Sbjct: 325 TGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVT 384

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------IISWNSVILGFLRNGQMNEAK 453
            WNTLL+ Y       E   LF +MQ + + P+      I+S  S +  F    Q++ A 
Sbjct: 385 TWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSAS 444

Query: 454 -------DMF------------------LQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
                  DMF                  L + ++  + +++ W ++ISGL  +S   EA 
Sbjct: 445 VRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAF 504

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
            F ++M E G+ P+ ++    ++ C  ++S+  GR +H  +++        +  SL+DMY
Sbjct: 505 DFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMY 564

Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
           AK GN+  A+  F+    K L  +N MI GYA +G   +A+ LF+ +      PDS+TF 
Sbjct: 565 AKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFI 624

Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
            +L  CSH+GLV+E +  F  M S++ + P +EH+ C+++ L+R     E   VI  MP 
Sbjct: 625 AVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPY 684

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
             D  +   LL+ CV  +  EL E+ ++HL +L+P NP  YV LSN YA  GR  + S V
Sbjct: 685 KDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAV 744

Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           R +M  +G+ K  G SW+   +    F+  D
Sbjct: 745 RALMSSRGVVKGRGYSWVNHKDGSRAFMVAD 775



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/504 (24%), Positives = 238/504 (47%), Gaps = 67/504 (13%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V+  ++ I    + GDL  AR +   M  RN V+WN++I    ++G   EA+ ++  M  
Sbjct: 76  VYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQ 135

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           EG+ PT  ++ S+LSA   + ALD+G++ H +AV  G++    + + ++  Y+K G + D
Sbjct: 136 EGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVAD 195

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAK 379
           A  +F  M   + V++  ++    Q G                 + D V  SS++   A+
Sbjct: 196 AVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQ 255

Query: 380 C-------ERIDNAKQVFNSIILR------------------------------------ 396
                    R     Q  +++++R                                    
Sbjct: 256 ACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSV 315

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
            +V WN L+  Y  LG    A  +   MQ  G  PN +++++++   ++   +  A+ MF
Sbjct: 316 SIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMF 375

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            ++     +P++ TW TL+SG  Q     E I  F+ M    ++P  TT+   LS+C+ +
Sbjct: 376 DKIP----KPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRL 431

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
            +   G+ +H   +R  L     + + L+D+Y+KCG +  A  +F++   +++  +N+MI
Sbjct: 432 GNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMI 491

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           SG A+H L+ EA    K +++ G+ P   ++ +++N C+    + +G ++   +  D   
Sbjct: 492 SGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYD 551

Query: 637 KPSMEHFGC-VVNLLSRCGNLDEA 659
           +    + GC ++++ ++ GN+D+A
Sbjct: 552 QNV--YVGCSLIDMYAKSGNMDDA 573



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 146/589 (24%), Positives = 263/589 (44%), Gaps = 81/589 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+++++     EA+++   M              +L  C     +  G++ H   +K G 
Sbjct: 114 IAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVG- 172

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +++VE  L+  Y KC ++  A RLF  +   N  S+ A++G   + G  + AL  F
Sbjct: 173 -LDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLF 231

Query: 171 VEMQEDGVSPDNFVLPNVLKACG--------ALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
             M   G+  D   + +VL AC             +   +++H  V++ GF     V +S
Sbjct: 232 ARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNS 291

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L+D+Y K   ++EA KVF+ + + ++V+WN +I GY Q G  E A+ V   M   G EP 
Sbjct: 292 LVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPN 351

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVF 341
            V+ +++L++   + A D      A A+ + +   +V   +++++ Y +  L ++   +F
Sbjct: 352 EVTYSNMLASC--IKARD---VPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLF 406

Query: 342 SRM----VERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKC 380
            RM    V+ D  T  ++++S  + G                  +D+ VAS ++D+Y+KC
Sbjct: 407 RRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKC 466

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
            ++  A  +FN +  RDVV WN++++  A    S EA     QM+  G+ P   S+ S+I
Sbjct: 467 GQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMI 526

Query: 441 -----------------------------LG------FLRNGQMNEAKDMFLQMQSLGVQ 465
                                        +G      + ++G M++A+  F  M    + 
Sbjct: 527 NLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCM----IV 582

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            NL+ W  +I G  QN  G +A+  F+ ML T  KP + T    L+ C+    +    A+
Sbjct: 583 KNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVD--EAV 640

Query: 526 HGYLIRHDLCLPTPIV---TSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
             +         TP+V   T L+D  A+     + + V    P K+ P+
Sbjct: 641 TFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPI 689



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 217/487 (44%), Gaps = 63/487 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           YG+L  GC Y+R M    ++   + ++G  F  NE   + ++    K   +  A  +F +
Sbjct: 327 YGQL--GC-YERAM----EVLEFMQESG--FEPNEVTYSNMLASCIKARDVPSARAMFDK 377

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +   +V +W  ++    +  L ++ +  F  MQ   V PD   L  +L +C  LG    G
Sbjct: 378 IPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELG 437

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + VH   +++     +FVAS LID+Y KCG +  A  +F+ M  R+VV WNSMI G   +
Sbjct: 438 KQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIH 497

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
            L+EEA     +M   G+ PT  S  S+++  A L ++ +G+Q HA  + +G + +  +G
Sbjct: 498 SLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVG 557

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
            S+I+ Y+K G ++DA + F+ M+ +++V WN +I  Y Q+G  +               
Sbjct: 558 CSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGE--------------- 602

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
                                             +A  LF  M      P+ +++ +V+ 
Sbjct: 603 ----------------------------------KAVELFEYMLTTKQKPDSVTFIAVLT 628

Query: 442 GFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
           G   +G ++EA   F  M+S  G+ P +  +T LI  L + +   E      +M     K
Sbjct: 629 GCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKM---PYK 685

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
                    L+AC    +   G     +L R D   P+P V  L ++YA  G    A  V
Sbjct: 686 DDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVL-LSNIYATLGRHGDASAV 744

Query: 561 FDISPSK 567
             +  S+
Sbjct: 745 RALMSSR 751



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/448 (23%), Positives = 192/448 (42%), Gaps = 79/448 (17%)

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           K AHA  +  G+  D  L + ++  YS  GL   A   F  +   ++ ++N  I++  ++
Sbjct: 30  KAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRA 89

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G           D+ A       A+ +   +  R+ V WNT++AA A  G  GEA  ++ 
Sbjct: 90  G-----------DLAA-------ARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQ 131

Query: 423 QMQLEGISPNIISWNSV----------------------------------ILG-FLRNG 447
            M  EG++P   +  SV                                  +LG + + G
Sbjct: 132 GMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCG 191

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
            + +A  +F  M S    PN +++T ++ GL Q    ++A+  F  M  TGI+     ++
Sbjct: 192 SVADAVRLFDGMPS----PNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVS 247

Query: 508 CALSACTDVA--------SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
             L AC            +++  ++IH  ++R        +  SLVD+YAK   + +A +
Sbjct: 248 SVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIK 307

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VF+   S  +  +N +I+GY   G    A+ + + +Q+ G +P+ +T++N+L +C  A  
Sbjct: 308 VFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARD 367

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD------EALRVILTMPCDPDAH 673
           V     +F     D   KPS+  +     LLS  G  +      +  R +      PD  
Sbjct: 368 VPSARAMF-----DKIPKPSVTTWN---TLLSGYGQEELHQETIDLFRRMQHQNVQPDRT 419

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQL 701
            +  +LS+C +    EL + +    ++L
Sbjct: 420 TLAVILSSCSRLGNFELGKQVHSASVRL 447



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 42/186 (22%)

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           S  N +A H  ++   L   T ++  LV++Y+  G    A R F   P   +  YNA IS
Sbjct: 25  SRSNAKAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAIS 84

Query: 578 -------------------------------GYAMHGLAVEALALFKNLQQKGIDPDSIT 606
                                            A  G   EAL +++ + Q+G+ P + T
Sbjct: 85  AACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFT 144

Query: 607 FTNILNACSHAGLVNE-----GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
             ++L+AC     +++     GL + VG+     V+  +      + + ++CG++ +A+R
Sbjct: 145 LASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGL------LGMYTKCGSVADAVR 198

Query: 662 VILTMP 667
           +   MP
Sbjct: 199 LFDGMP 204


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  359 bits (921), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 197/608 (32%), Positives = 324/608 (53%), Gaps = 91/608 (14%)

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           + G  +EA+ +   M L+G          +L   A L +L++G++ HA  + +G++ +  
Sbjct: 73  KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV------------------- 360
           L +++++ Y+K G L DA  VF  + +R+IV+W  +I ++V                   
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG 192

Query: 361 ---------------------QSGQS------------DVVVASSIVDMYAKCERIDNAK 387
                                Q GQ             +  V +S+V MYAKC  I  A+
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQ 252

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG----- 442
            +F+ +  ++VV W  L+A YA  G+   A  L  +MQ   ++PN I++ S++ G     
Sbjct: 253 VIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPL 312

Query: 443 ------------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
                                         + + G + EA+ +F  +       +++TWT
Sbjct: 313 ALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLP----HRDVVTWT 368

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
            +++G  Q    +EAI  F+ M + GIKP   T T AL++C+  A L+ G++IH  L+  
Sbjct: 369 AMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHA 428

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
              L   + ++LV MYAKCG++  A+ VF+    + +  + AMI+G A HG   EAL  F
Sbjct: 429 GYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYF 488

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           + ++++GI PD +TFT++L+AC+H GLV EG + F  M+ D+ +KP +EH+ C V+LL R
Sbjct: 489 EQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGR 548

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G+L+EA  VILTMP  P   + G+LLS C   ++ E  E  +E++L+L+PD+ G YVAL
Sbjct: 549 AGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVAL 608

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           SN YAA+GR+ +  +VR +M+++ + K PG SWI++  ++HVF   D+SHP+ +EIYA L
Sbjct: 609 SNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAEL 668

Query: 773 ALLGMHVR 780
             L   ++
Sbjct: 669 GKLTEQIK 676



 Score =  225 bits (574), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 154/572 (26%), Positives = 265/572 (46%), Gaps = 59/572 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S L K+ +++EA+ +L  M  +  ++  +++  LLQ C   R +  G+++HA ILK+G 
Sbjct: 68  VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSG- 126

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               N Y+E  L+  YAKC +L  A R+F  +R +N+ SW A+I        + +A   +
Sbjct: 127 -IQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCY 185

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M+  G  PD     ++L A      +  G+ VH  + K G +    V +SL+ MY KC
Sbjct: 186 ETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKC 245

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           GD+ +A+ +FD +  +NVV W  +I GY Q G  + A+ +  +M    V P +++ TSIL
Sbjct: 246 GDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSIL 305

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
                  AL+ GK+ H   + +G   +  + +++I  Y K G L++A  +F  +  RD+V
Sbjct: 306 QGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVV 365

Query: 351 TWNLLIASYVQSGQSD-------------------------------------------- 366
           TW  ++  Y Q G  D                                            
Sbjct: 366 TWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQL 425

Query: 367 --------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                   V + S++V MYAKC  +D+A+ VFN +  R+VV W  ++   A  GR  EA 
Sbjct: 426 VHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREAL 485

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLISG 477
             F QM+ +GI P+ +++ SV+      G + E +  F  M    G++P +  ++  +  
Sbjct: 486 EYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDL 545

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
           L +     EA      +L    +P  +     LSAC   + +  G      +++ D    
Sbjct: 546 LGRAGHLEEA---ENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDD 602

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
              V +L ++YA  G    A++V  +   +++
Sbjct: 603 GAYV-ALSNIYAAAGRYEDAEKVRQVMEKRDV 633


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  359 bits (921), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 202/653 (30%), Positives = 334/653 (51%), Gaps = 85/653 (13%)

Query: 208 VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267
           ++K GF       + LI ++ K   + EA +VF+ +  +  V +++M+ GY +N    +A
Sbjct: 67  IIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDA 126

Query: 268 IRVFYEMTLEGVEPTRVSVTSILSASA-NLDALDEGKQAHAVAVINGMELDNVLGSSIIN 326
           +R +  M  + V P     T +L  S  NLD L  G++ H + + NG + +    ++++N
Sbjct: 127 VRFYERMRCDEVMPVVYDFTYLLQLSGENLD-LRRGREIHGMVITNGFQSNLFAMTAVVN 185

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVV 369
            Y+K   +EDA  +F RM +RD+V+WN ++A Y Q+G                 + D + 
Sbjct: 186 LYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSIT 245

Query: 370 ASSI-----------------------------------VDMYAKCERIDNAKQVFNSII 394
             S+                                   +D Y KC  + +A+ VF  + 
Sbjct: 246 LVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMS 305

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQ- 448
            R+VV WNT++  YA  G S EA   F +M  EG+ P  +S    +     LG L  G+ 
Sbjct: 306 SRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRY 365

Query: 449 ----------------MNEAKDMFLQMQSLGV---------QPNLITWTTLISGLTQNSC 483
                           MN    M+ + + + +            ++TW  +I G  QN C
Sbjct: 366 VHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGC 425

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
            NEA+  F EM    IKP + T+   ++A  D++  R  + IHG  IR  +     + T+
Sbjct: 426 VNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTA 485

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+D +AKCG I  A+++FD+   + +  +NAMI GY  +G   EAL LF  +Q   + P+
Sbjct: 486 LIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPN 545

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            ITF +++ ACSH+GLV EG+  F  M  ++ ++P+M+H+G +V+LL R G LD+A + I
Sbjct: 546 EITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFI 605

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             MP  P   ++G++L  C      EL E  ++ L  L+PD+ G +V L+N YA++  W+
Sbjct: 606 QDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWD 665

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLG 776
           +V++VR  M++KG++K PGCS +++  E+H F +   +HP+++ IYA L  LG
Sbjct: 666 KVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLG 718



 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/522 (30%), Positives = 258/522 (49%), Gaps = 62/522 (11%)

Query: 47  YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHAR 104
           Y   +   +K   +R+AV     M+C   ++ P +Y    LLQ      D+  G++IH  
Sbjct: 110 YHTMLKGYAKNSTLRDAVRFYERMRCD--EVMPVVYDFTYLLQLSGENLDLRRGREIHGM 167

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           ++ NG  F  N +  T +V  YAKC  ++ A ++F R+  +++ SW  ++    + G + 
Sbjct: 168 VITNG--FQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFAR 225

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
           +A+   ++MQE G  PD+  L +VL A   L  +  GR++HGY  + GF+  V VA++++
Sbjct: 226 RAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAML 285

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
           D Y KCG +  AR VF GM +RNVV+WN+MI GY QNG +EEA   F +M  EGVEPT V
Sbjct: 286 DTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNV 345

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           S+   L A ANL  L+ G+  H +     +  D  + +S+I+ YSK   ++ A  VF  +
Sbjct: 346 SMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNL 405

Query: 345 VERDIVTWNLLIASYVQSG----------------------------------------- 363
             + +VTWN +I  Y Q+G                                         
Sbjct: 406 KHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAK 465

Query: 364 -----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                        +V V ++++D +AKC  I  A+++F+ +  R V+ WN ++  Y   G
Sbjct: 466 WIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNG 525

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITW 471
              EA  LF +MQ   + PN I++ SVI     +G + E    F  M ++ G++P +  +
Sbjct: 526 HGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHY 585

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
             ++  L +    ++A  F Q+M    +KP  T +   L AC
Sbjct: 586 GAMVDLLGRAGRLDDAWKFIQDM---PVKPGITVLGAMLGAC 624



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 149/587 (25%), Positives = 258/587 (43%), Gaps = 98/587 (16%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+ C   ++++   QI   I+KNG  F      +TKL+  + K +++  A+R+F  +  
Sbjct: 50  LLELCTSLKELH---QILPLIIKNG--FYNEHLFQTKLISLFCKFNSITEAARVFEPVEH 104

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           K    +  ++    +      A+  +  M+ D V P  +    +L+  G    +  GR +
Sbjct: 105 KLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREI 164

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HG V+  GF   +F  ++++++Y KC  +E+A K+F+ M  R++V+WN+++ GY QNG  
Sbjct: 165 HGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFA 224

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
             A++V  +M   G +P  +++ S+L A A+L AL  G+  H  A   G E    + +++
Sbjct: 225 RRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAM 284

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS------------------- 365
           ++ Y K G +  A +VF  M  R++V+WN +I  Y Q+G+S                   
Sbjct: 285 LDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTN 344

Query: 366 ---------------------------------DVVVASSIVDMYAKCERIDNAKQVFNS 392
                                            DV V +S++ MY+KC+R+D A  VF +
Sbjct: 345 VSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGN 404

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF--------- 443
           +  + VV WN ++  YA  G   EA  LF +MQ   I P+  +  SVI            
Sbjct: 405 LKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQA 464

Query: 444 --------------------------LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
                                      + G +  A+ +F  MQ    + ++ITW  +I G
Sbjct: 465 KWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQ----ERHVITWNAMIDG 520

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
              N  G EA+  F EM    +KP+  T    ++AC+    +  G      +  +    P
Sbjct: 521 YGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEP 580

Query: 538 T-PIVTSLVDMYAKCGNIHQAKRVFDISPSKE-LPVYNAMISGYAMH 582
           T     ++VD+  + G +  A +     P K  + V  AM+    +H
Sbjct: 581 TMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIH 627


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  359 bits (921), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 214/694 (30%), Positives = 365/694 (52%), Gaps = 21/694 (3%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
           EL++    +R +   + IH  ++K          +  +LV+ Y+KC     A ++F  + 
Sbjct: 66  ELIRESADERCLKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIP 125

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            K+VFSW  ++      G     +  FVE+    + PD + L   ++AC  +  +  G  
Sbjct: 126 QKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEM 185

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           VH  V+  GF    FV +SL+ MY K G + ++ KVF+ +  RN V+WN+MI G+V NGL
Sbjct: 186 VHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGL 245

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
             EA   F  M  E + P      S+  A   L  +++G+  + +A   GM+ +  +G++
Sbjct: 246 YAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTA 305

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVT--WNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +I+ ++K G + ++  VF        V   WN +I+ +  SG  +     +++     C+
Sbjct: 306 LIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGE----EAMLLFLRMCQ 361

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
             +N K        RDV  + + L + AD+ RS E  +  + M  +  S  +   N+++ 
Sbjct: 362 --NNIK--------RDVYTYCSTLNSIADM-RSLEYVKQLHGMIWKSGSIGVSLCNALMD 410

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
            + + G+++  + +F   +    + N I+WTTL++  +Q+S   +A+  F +M E G +P
Sbjct: 411 AYAKCGELDAMRKLFDTWE----ESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQP 466

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
           +  T +  L++C  + SL  G+ +H    +        + + L+DMYAKCG++  A +VF
Sbjct: 467 NQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVF 526

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           +     ++  + AMISGYA HG+A +AL LF+ ++    +P+S TF  +L ACSH GLV+
Sbjct: 527 ESLKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVD 586

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           EGL  F  M   + + P +EH+ CVV++L R G L EA + I+ MP +PD  +  +LL  
Sbjct: 587 EGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGA 646

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C      +LA+  ++ +L   PD+    V LSN Y  +G       VR++MK + +RK  
Sbjct: 647 CRVHGNIQLAKIAAQKVLSYNPDDFAALVLLSNTYREAGNIEGGLNVRNMMKSQAMRKET 706

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           G SWI IG ++H F + D+ HP+ ++IY TL +L
Sbjct: 707 GMSWICIGGKIHKFCSGDQYHPQKDDIYKTLNVL 740



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 110/221 (49%), Gaps = 4/221 (1%)

Query: 37  DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMY 96
           D   ES   S+   +++ S+  +  +A+ + ++M+   FQ     +  +L  C     + 
Sbjct: 426 DTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLE 485

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
            GQQ+H+   K G  FAR++ VE+ L+  YAKC ++  A ++F  L+  +V SW A+I  
Sbjct: 486 YGQQVHSLTCKTG--FARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISG 543

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDG 215
             + G+++ AL  F +M+    +P++     +L AC   G V  G R  H    + G   
Sbjct: 544 YAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVP 603

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
            +   + ++D+ G+ G L EA K    M I  +   W++++
Sbjct: 604 EIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLL 644


>gi|297810965|ref|XP_002873366.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319203|gb|EFH49625.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 832

 Score =  359 bits (921), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 227/732 (31%), Positives = 386/732 (52%), Gaps = 62/732 (8%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD-ALDVASRLFC 140
           +  LL  CV   D Y G+ +H+ I+K G    ++  V   LV  YAK    +  A   F 
Sbjct: 125 FAILLPVCVRLGDSYNGKSMHSYIIKTG--LEKDTLVGNALVSMYAKFGYIIPDAFTAFD 182

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW-VG 199
            +  K+V SW AII       +   A   F  M ++   P+   + NVL  C ++G  + 
Sbjct: 183 DIADKDVVSWNAIIAGFSENKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMGKNIA 242

Query: 200 F--GRAVHGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
           +  GR +H YV++  +    VFV +SL+  Y + G +EEA  +F  M ++++V+WN +I 
Sbjct: 243 YRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIA 302

Query: 257 GYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
           GY  N    +A+++F+ +  +G V    V++ SIL   A L  L  GK+ H+  + +   
Sbjct: 303 GYASNHEWLKALQLFHNLVQKGDVSLDPVTILSILPVCAQLTDLTCGKEIHSYILRHSYL 362

Query: 316 L-DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS--------- 365
           L D  +G+++I+FY++ G    A   FS M  +DI++WN ++ ++  S +          
Sbjct: 363 LEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDIISWNAILDAFADSPKQFQFLNLLHH 422

Query: 366 --------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV-------LWNTLLAAYAD 410
                   D V   S++      + I   K+V    +   ++       L N LL AYA 
Sbjct: 423 LFNEAITLDSVTILSLLKFCTNVQGIGKVKEVHGYSVKAGLLHNEEEPKLGNALLDAYAK 482

Query: 411 LGRSGEASRLFYQMQLEGISP--NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
            G    A ++F     +G+S    ++++NS++ G++ +G  ++A+ +F +M +     +L
Sbjct: 483 CGNVEYAHKIF-----QGLSERRTLVTYNSLLSGYVNSGSHDDAQMLFSEMST----TDL 533

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
            TW+ ++    ++   NEAI  F+E+   G++P+T TI   L  C  +ASL   R  HGY
Sbjct: 534 TTWSLMVRIYAESCFPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGY 593

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +IR  L     +  +L+D+YAKCG++  A  VF     ++L ++ AM++GYA+HG   EA
Sbjct: 594 IIRGRLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEA 652

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L +F ++    I PD                 ++GL+++  + + H +KP+ME + C V+
Sbjct: 653 LMIFSHMIDSNIKPD-----------------HDGLQIYDSIRAVHGMKPTMEQYACAVD 695

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL+R G LD+A   I  MP +P+A+I G+LL  C   N  +L   ++ HLLQ E D  GN
Sbjct: 696 LLARGGRLDDAYSFITQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDETGN 755

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           +V +SN YAA  +W  V ++R++MK+K ++K  GCSW+++  +  VFV+ D SHP+ + I
Sbjct: 756 HVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGKRDVFVSGDCSHPRRDSI 815

Query: 769 YATLALLGMHVR 780
           +  +  L + ++
Sbjct: 816 FDLVNALYLQMK 827



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 168/704 (23%), Positives = 313/704 (44%), Gaps = 121/704 (17%)

Query: 75  FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV 134
           F     ++ ++++ C    ++ +G+ +H  + K G        V   ++  YAKC  +D 
Sbjct: 17  FGTDHRVFLDVVKACASVSELTSGRALHGCVFKLGHIACTE--VSKSVLNMYAKCRRMDD 74

Query: 135 ASRLFCRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQ-EDGVSPDNFVLPNVLKAC 192
             ++F ++   +   W  ++ GL+   G   + +  F  M   D   P +     +L  C
Sbjct: 75  CQKMFRQMDSVDPVVWNIVLTGLSVSCG--RETMRFFKAMHFADEPKPSSVTFAILLPVC 132

Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD-LEEARKVFDGMIARNVVAW 251
             LG    G+++H Y++K G +    V ++L+ MY K G  + +A   FD +  ++VV+W
Sbjct: 133 VRLGDSYNGKSMHSYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVSW 192

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD---ALDEGKQAHAV 308
           N++I G+ +N +  +A R F  M  E  EP   ++ ++L   A++    A   G+Q H+ 
Sbjct: 193 NAIIAGFSENKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMGKNIAYRSGRQIHSY 252

Query: 309 AVING-MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY-------- 359
            V    ++    + +S+++FY +VG +E+A  +F+RM  +D+V+WN++IA Y        
Sbjct: 253 VVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNHEWLK 312

Query: 360 --------VQSGQS--DVVVASSIVDMYAKCERIDNAKQVF-----NSIILRDVVLWNTL 404
                   VQ G    D V   SI+ + A+   +   K++      +S +L D  + N L
Sbjct: 313 ALQLFHNLVQKGDVSLDPVTILSILPVCAQLTDLTCGKEIHSYILRHSYLLEDTSVGNAL 372

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           ++ YA  G +  A   F  M ++    +IISWN+++  F          D   Q Q L +
Sbjct: 373 ISFYARFGDTSAAYWAFSLMSMK----DIISWNAILDAF---------ADSPKQFQFLNL 419

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
             +L                NEAI              + TI   L  CT+V  +   + 
Sbjct: 420 LHHLF---------------NEAITL-----------DSVTILSLLKFCTNVQGIGKVKE 453

Query: 525 IHGYLIRHDLCL---PTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYA 580
           +HGY ++  L        +  +L+D YAKCGN+  A ++F  +S  + L  YN+++SGY 
Sbjct: 454 VHGYSVKAGLLHNEEEPKLGNALLDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLLSGYV 513

Query: 581 MHG-------------------------------LAVEALALFKNLQQKGIDPDSITFTN 609
             G                                  EA+ +F+ +Q +G+ P+++T  N
Sbjct: 514 NSGSHDDAQMLFSEMSTTDLTTWSLMVRIYAESCFPNEAIGVFREIQARGMRPNTVTIMN 573

Query: 610 ILNACSHAG---LVNEGLELFV-GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           +L  C+      LV +     + G   D ++K      G ++++ ++CG+L  A  V  +
Sbjct: 574 LLPVCAQLASLHLVRQCHGYIIRGRLGDIRLK------GTLLDVYAKCGSLKHAYSVFQS 627

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL--QLEPDNPG 707
                D  +  ++++        + A  I  H++   ++PD+ G
Sbjct: 628 -DARRDLVMFTAMVAGYAVHGRGKEALMIFSHMIDSNIKPDHDG 670



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 144/578 (24%), Positives = 274/578 (47%), Gaps = 40/578 (6%)

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G   D+ V  +V+KAC ++  +  GRA+HG V K+G   C  V+ S+++MY KC  +++ 
Sbjct: 16  GFGTDHRVFLDVVKACASVSELTSGRALHGCVFKLGHIACTEVSKSVLNMYAKCRRMDDC 75

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL-EGVEPTRVSVTSILSASAN 295
           +K+F  M + + V WN ++ G +      E +R F  M   +  +P+ V+   +L     
Sbjct: 76  QKMFRQMDSVDPVVWNIVLTG-LSVSCGRETMRFFKAMHFADEPKPSSVTFAILLPVCVR 134

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG-LLEDAEVVFSRMVERDIVTWNL 354
           L     GK  H+  +  G+E D ++G+++++ Y+K G ++ DA   F  + ++D+V+WN 
Sbjct: 135 LGDSYNGKSMHSYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVSWNA 194

Query: 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG-- 412
           +IA + ++        S  + +    E   N   + N            +L   A +G  
Sbjct: 195 IIAGFSENKMMADAFRSFCLMLKEPTE--PNYATIAN------------VLPVCASMGKN 240

Query: 413 ---RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
              RSG      Y +Q   +  ++   NS++  +LR G++ EA  +F +M S     +L+
Sbjct: 241 IAYRSGRQIH-SYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGS----KDLV 295

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGY 528
           +W  +I+G   N    +A+  F  +++ G +     TI   L  C  +  L  G+ IH Y
Sbjct: 296 SWNVVIAGYASNHEWLKALQLFHNLVQKGDVSLDPVTILSILPVCAQLTDLTCGKEIHSY 355

Query: 529 LIRHDLCLP-TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
           ++RH   L  T +  +L+  YA+ G+   A   F +   K++  +NA++  +A      +
Sbjct: 356 ILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDIISWNAILDAFADSPKQFQ 415

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHA---GLVNE--GLELFVGMFSDHQVKPSMEH 642
            L L  +L  + I  DS+T  ++L  C++    G V E  G  +  G+  + + +P + +
Sbjct: 416 FLNLLHHLFNEAITLDSVTILSLLKFCTNVQGIGKVKEVHGYSVKAGLLHNEE-EPKLGN 474

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
              +++  ++CGN++ A ++   +          SLLS  V S   + A+ +     ++ 
Sbjct: 475 --ALLDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLLSGYVNSGSHDDAQML---FSEMS 529

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
             +   +  +   YA S   NE   V   ++ +G+R N
Sbjct: 530 TTDLTTWSLMVRIYAESCFPNEAIGVFREIQARGMRPN 567


>gi|413918395|gb|AFW58327.1| hypothetical protein ZEAMMB73_709604 [Zea mays]
          Length = 906

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 223/730 (30%), Positives = 368/730 (50%), Gaps = 51/730 (6%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV---ASRLFCR 141
           ++  C   R + TG+ +H  ++K G     +      LV  YAKC    V   A R F  
Sbjct: 181 IVPACAKWRHLQTGRSVHCYVVKTG--LESDTLCGNALVSMYAKCGGSRVMVDAHRAFSS 238

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +R K+V SW ++I       L  +AL  F +M   G  P+   + ++L  C    +  FG
Sbjct: 239 IRCKDVVSWNSVIAGYIENQLFGEALALFSQMISQGYLPNYSTVASILPVCS---FTEFG 295

Query: 202 R----AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           R     VH +V++ G +  V V+++L+  Y K  ++++   +F  M  R++V+WN++I G
Sbjct: 296 RHHGKEVHSFVVRHGMEIDVSVSNALMTHYSKVLEMKDVESIFTSMDVRDIVSWNTIIAG 355

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           YV NG +  A+ +F  +   G+ P  VS  S+L+A A +  +  G + H       +  +
Sbjct: 356 YVMNGYHHRALGLFQGLLSTGIAPDSVSFISLLTACAQVGDVKTGMEVHGYIFQRPVLQE 415

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
             L ++++ FYS     +DA   F+ ++ +D ++WN ++++   S Q    +    V M 
Sbjct: 416 TSLMNALVTFYSHCDRFDDAFRAFTDILNKDSISWNAILSACATSEQH---IEKFFVLMS 472

Query: 378 AKCERIDNAK----QVFNSI---------ILRDVVLW-------------NTLLAAYADL 411
             C  ++  +     V N I         ++R+   W             N +L AY   
Sbjct: 473 EMCRGVNQCQWDSVTVLNVIHMSTFCGIKMVREAHGWSLRVGYTGETSVANAILDAYVKC 532

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
           G S +AS LF          NI++ N +I  +L++  + +A+ +F  M     + +L +W
Sbjct: 533 GYSHDASILFRNHA----GRNIVTDNIMISCYLKSNCIEDAEVIFNHM----AEKDLTSW 584

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
             +I    QN    +A   F  +   G+KP   +I   L AC  + S++  R  H Y++R
Sbjct: 585 NLMIQLYAQNDMDGQAFSLFNHLQSEGLKPDIVSIANILEACIHLCSVQLVRQCHAYMLR 644

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
             L     +  +LVD Y+KCGNI  A  +F ISP K+L  + AMI  YAMHG+A EA+ L
Sbjct: 645 ASL-EDIHLEGALVDAYSKCGNITNAYNIFQISPKKDLVTFTAMIGCYAMHGMAEEAVEL 703

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  + +  I PD +  T +L+ACSHAGLV+ G+++F  +   H+V P+ EH+ C+V+LL+
Sbjct: 704 FSKMLKLDIRPDHVVLTTLLSACSHAGLVDAGIKIFKSIREIHRVVPTAEHYACMVDLLA 763

Query: 652 RCGNLDEALRVILTMPCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
           R G++ +A    L MP    +A+   SLL  C    + E+ +  +  L  +E  + GNYV
Sbjct: 764 RSGHIQDAYMFALDMPPHAVNANAWSSLLGACKVHGKVEIGQLAAGRLFSMEGGDIGNYV 823

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            +SN YAA  +W+ V  VR +MK   ++K  GCSWI++ +  H+F+A D +H     IY 
Sbjct: 824 IMSNIYAADEKWDGVENVRKLMKSIDMKKPAGCSWIEVEKTRHLFIASDINHQDRSCIYD 883

Query: 771 TLALLGMHVR 780
            L  L   ++
Sbjct: 884 MLGSLYQQIK 893



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 139/567 (24%), Positives = 255/567 (44%), Gaps = 86/567 (15%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVG--FGRAVHGYVLKVG-FDGCVFVASSLIDMYGK 229
           M  +G  P    L   +++  AL   G    R +HG  +K G       VA +++D YG+
Sbjct: 59  MLGEGHRPGALELAAAIRSSSALPGSGSALARCLHGLAVKAGRVASSATVAKAVMDAYGR 118

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE---PTRVSV 286
            G L +A  +FD M   + V WN +I    + GL E+A  +F  M   GV    PT V+V
Sbjct: 119 FGSLADALLLFDEMARPDAVCWNILITACSRRGLFEDAFILFRSMLSCGVGQGMPTAVTV 178

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG---LLEDAEVVFSR 343
             I+ A A    L  G+  H   V  G+E D + G+++++ Y+K G   ++ DA   FS 
Sbjct: 179 AVIVPACAKWRHLQTGRSVHCYVVKTGLESDTLCGNALVSMYAKCGGSRVMVDAHRAFSS 238

Query: 344 MVERDIVTWNLLIASYVQS---GQSDVVVA-----------SSIVDMYAKCERID----N 385
           +  +D+V+WN +IA Y+++   G++  + +           S++  +   C   +    +
Sbjct: 239 IRCKDVVSWNSVIAGYIENQLFGEALALFSQMISQGYLPNYSTVASILPVCSFTEFGRHH 298

Query: 386 AKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
            K+V +S ++R     DV + N L+  Y+ +    +   +F  M +     +I+SWN++I
Sbjct: 299 GKEV-HSFVVRHGMEIDVSVSNALMTHYSKVLEMKDVESIFTSMDVR----DIVSWNTII 353

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
            G++ NG  + A  +F  + S G+ P+ +++ +L                          
Sbjct: 354 AGYVMNGYHHRALGLFQGLLSTGIAPDSVSFISL-------------------------- 387

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
                    L+AC  V  ++ G  +HGY+ +  +   T ++ +LV  Y+ C     A R 
Sbjct: 388 ---------LTACAQVGDVKTGMEVHGYIFQRPVLQETSLMNALVTFYSHCDRFDDAFRA 438

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP---DSITFTNILNACSHA 617
           F    +K+   +NA++S  A     +E   +  +   +G++    DS+T  N+++  +  
Sbjct: 439 FTDILNKDSISWNAILSACATSEQHIEKFFVLMSEMCRGVNQCQWDSVTVLNVIHMSTFC 498

Query: 618 G--LVNE--GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           G  +V E  G  L VG   +  V  +      +++   +CG   +A  ++       +  
Sbjct: 499 GIKMVREAHGWSLRVGYTGETSVANA------ILDAYVKCGYSHDA-SILFRNHAGRNIV 551

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQ 700
               ++S  +KSN  E AE I  H+ +
Sbjct: 552 TDNIMISCYLKSNCIEDAEVIFNHMAE 578



 Score = 43.5 bits (101), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 117/285 (41%), Gaps = 59/285 (20%)

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNG--RAIHGYLIRHDLCLPTPIVT-SLVDMYAK 550
           ML  G +P    +  A+ + + +    +   R +HG  ++      +  V  +++D Y +
Sbjct: 59  MLGEGHRPGALELAAAIRSSSALPGSGSALARCLHGLAVKAGRVASSATVAKAVMDAYGR 118

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID---PDSITF 607
            G++  A  +FD     +   +N +I+  +  GL  +A  LF+++   G+    P ++T 
Sbjct: 119 FGSLADALLLFDEMARPDAVCWNILITACSRRGLFEDAFILFRSMLSCGVGQGMPTAVTV 178

Query: 608 TNILNACS-----------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
             I+ AC+           H  +V  GLE      SD     ++      V++ ++CG  
Sbjct: 179 AVIVPACAKWRHLQTGRSVHCYVVKTGLE------SDTLCGNAL------VSMYAKCG-- 224

Query: 657 DEALRVILTMPCDPDAH-IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
               RV++      DAH    S+    V S  + +A YI   L        G  +AL + 
Sbjct: 225 --GSRVMV------DAHRAFSSIRCKDVVSWNSVIAGYIENQLF-------GEALALFSQ 269

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI----GEELHVFV 756
             + G     S V  I+        P CS+ +     G+E+H FV
Sbjct: 270 MISQGYLPNYSTVASIL--------PVCSFTEFGRHHGKEVHSFV 306


>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 754

 Score =  358 bits (920), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 216/728 (29%), Positives = 369/728 (50%), Gaps = 88/728 (12%)

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
            H+ I+  G+  + N +  TKL+ FYA       ++ LF  +  K++F W +II  +   
Sbjct: 29  FHSLIITTGN--SNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSN 86

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVFV 219
           G  ++A   +++M+     P+ F +P V+  C  L     G  +HG   K+G F G   +
Sbjct: 87  GDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAI 146

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            SS I MY KCG +E A  +F  +  ++VV W ++IVGYVQN  +   ++  +EM   G 
Sbjct: 147 GSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGG 206

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P   ++ S   A  +LDAL EGK  H +A+ NG     V+ S+I++ YS+ G  E+A  
Sbjct: 207 TPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYR 266

Query: 340 VFSRMVERDIVTWNLLIASYVQSG------------QSDVVVASSIV------------- 374
            F ++ ++D+++W  +IA + + G            Q+  ++   IV             
Sbjct: 267 CFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDR 326

Query: 375 ---------------------------DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                                       MY K   +  A ++F+S   +    W+T++  
Sbjct: 327 IFEGKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSF-HKSSEDWSTMILG 385

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK-------------- 453
           Y+++G+  +      +M L G  P++ S  SVI    + G +N  +              
Sbjct: 386 YSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIEN 445

Query: 454 --------DMF---------LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
                   DM+          ++    +Q ++I+W TLIS   Q+    EAI+ F +M++
Sbjct: 446 VSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVK 505

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
             + P+  T    LSAC  +ASL  G  IH Y+  +       I T+L+DMYAKCG +  
Sbjct: 506 EKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELET 565

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           ++++F+ +  +++ ++N MIS Y MHG    A+ +F+ +++  I P++ TF ++L+AC+H
Sbjct: 566 SRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNH 625

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            G V EG  LF  M   + ++PS++H+  +++LL R G+L+ A  ++L+MP  PD  + G
Sbjct: 626 TGHVLEGRHLFDRM-QKYGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDGTVWG 684

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           SLLS C   NE E+   ++ + ++ +P N G Y+ LS+ Y+  GRW+EV +VRD+MK++G
Sbjct: 685 SLLSACKIHNEFEVGVRLARYAIESDPKNDGYYIILSDLYSCLGRWDEVEKVRDMMKKRG 744

Query: 737 LRKNPGCS 744
           + K  G S
Sbjct: 745 VEKRAGWS 752



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 211/427 (49%), Gaps = 20/427 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+  SK   + E + L  EM+         +   +L G      ++ G+  HARILK   
Sbjct: 283 IAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQC- 341

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
             A +      L+  Y K   L  A+++F     K+   W+ +I     +G  EK +   
Sbjct: 342 -CALSGITHNALLSMYCKFGHLGTANKIFHSFH-KSSEDWSTMILGYSNMGQKEKCISFL 399

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EM   G  PD   L +V+ +C  +G +  GR++H Y +K      V VA+SL+DMYGK 
Sbjct: 400 REMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKS 459

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +    ++F   + R+V++WN++I  Y Q+G+  EAI +F +M  E V P +V+   +L
Sbjct: 460 GHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVL 519

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA A+L +LDEG++ H     NG E +  + +++I+ Y+K G LE +  +F+   ERD++
Sbjct: 520 SACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELETSRKLFNSTEERDVI 579

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
            WN++I++Y   G   V  A  I  +  +     NA+               +LL+A   
Sbjct: 580 LWNVMISNYGMHGH--VESAMEIFQLMEESNIKPNAQTFL------------SLLSACNH 625

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
            G   E   LF +MQ  GI P++  + S+I    R+G +  A+ + L M    + P+   
Sbjct: 626 TGHVLEGRHLFDRMQKYGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMP---ITPDGTV 682

Query: 471 WTTLISG 477
           W +L+S 
Sbjct: 683 WGSLLSA 689


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  358 bits (920), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 222/740 (30%), Positives = 362/740 (48%), Gaps = 93/740 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARI----LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
           LL+ C+  + +  G+ IH ++    L+N  F  +N      L+  Y  C   D A  +F 
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKN------LINLYLSCHLYDHAKCVFD 62

Query: 141 RLRVKNVFS-WAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALGWV 198
            +      S W  ++    +  +  +AL  F ++     + PD++  P+VLKACG L   
Sbjct: 63  NMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKY 122

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
             G+ +H  ++K G    + V SSL+ MY KC   E+A  +F+ M  ++V  WN++I  Y
Sbjct: 123 VLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCY 182

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            Q+G  +EA+  F  M   G EP  V++T+ +S+ A L  L+ G + H   + +G  LD+
Sbjct: 183 YQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDS 242

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
                                                             ++S++VDMY 
Sbjct: 243 F-------------------------------------------------ISSALVDMYG 253

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
           KC  ++ A +VF  +  + VV WN++++ Y   G S    +LF +M  EG+ P + + +S
Sbjct: 254 KCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSS 313

Query: 439 VILGFLRNGQMNEAK----------------------DMFLQMQSLGVQPNL-------- 468
           +I+   R+ ++ E K                      D++ +   + +  N+        
Sbjct: 314 LIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSK 373

Query: 469 -ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
            ++W  +ISG        EA+  F EM ++ ++P   T T  L+AC+ +A+L  G  IH 
Sbjct: 374 VVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHN 433

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
            +I   L     ++ +L+DMYAKCG + +A  VF   P ++L  + +MI+ Y  HG A  
Sbjct: 434 LIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYV 493

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVV 647
           AL LF  + Q  + PD +TF  IL+AC HAGLV+EG   F  M + + + P +EH+ C++
Sbjct: 494 ALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLI 553

Query: 648 NLLSRCGNLDEALRVILTMP-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           +LL R G L EA  ++   P    D  ++ +L S C      +L   I+  L+  +PD+ 
Sbjct: 554 DLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDS 613

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTE 766
             Y+ LSN YA++ +W+EV  VR  MKE GL+KNPGCSWI+I +++  F   D SH   E
Sbjct: 614 STYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSHLHLE 673

Query: 767 EIYATLALLGMHVRLVSKVF 786
            ++  L+ L  H+   SK F
Sbjct: 674 LVFKCLSYLSDHMEDESKPF 693



 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/505 (28%), Positives = 239/505 (47%), Gaps = 57/505 (11%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  +L+ C        G+ IH  ++K G     +  V + LV  YAKC+A + A  LF  
Sbjct: 109 YPSVLKACGGLYKYVLGKMIHTCLVKTG--LMMDIVVGSSLVGMYAKCNAFEKAIWLFNE 166

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  K+V  W  +I    + G  ++AL  F  M+  G  P++  +   + +C  L  +  G
Sbjct: 167 MPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRG 226

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             +H  ++  GF    F++S+L+DMYGKCG LE A +VF+ M  + VVAWNSMI GY   
Sbjct: 227 MEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLK 286

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G +   I++F  M  EGV+PT  +++S++   +    L EGK  H   + N ++ D  + 
Sbjct: 287 GDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFIN 346

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----------------- 364
           SS+++ Y K G +E AE +F  + +  +V+WN++I+ YV  G+                 
Sbjct: 347 SSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVE 406

Query: 365 -----------------------------------SDVVVASSIVDMYAKCERIDNAKQV 389
                                              ++ VV  +++DMYAKC  +D A  V
Sbjct: 407 PDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSV 466

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F  +  RD+V W +++ AY   G++  A  LF +M    + P+ +++ +++      G +
Sbjct: 467 FKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLV 526

Query: 450 NEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           +E    F QM ++ G+ P +  ++ LI  L +    +EA    Q+  E  I+     ++ 
Sbjct: 527 DEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPE--IRDDVELLST 584

Query: 509 ALSACTDVASLRNGRAIHGYLIRHD 533
             SAC    ++  G  I   LI  D
Sbjct: 585 LFSACRLHRNIDLGAEIARTLIDKD 609



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 207/409 (50%), Gaps = 17/409 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS   +    +EA++    M+   F+         +  C    D+  G +IH  ++ +G 
Sbjct: 179 ISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSG- 237

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + ++ + LV  Y KC  L++A  +F ++  K V +W ++I      G S   +  F
Sbjct: 238 -FLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLF 296

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M  +GV P    L +++  C     +  G+ VHGY ++      VF+ SSL+D+Y KC
Sbjct: 297 KRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKC 356

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E A  +F  +    VV+WN MI GYV  G   EA+ +F EM    VEP  ++ TS+L
Sbjct: 357 GKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVL 416

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           +A + L AL++G++ H + +   ++ + V+  ++++ Y+K G +++A  VF  + +RD+V
Sbjct: 417 TACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLV 476

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           +W  +I +Y   GQ+ V      ++++A         ++  S +  D V +  +L+A   
Sbjct: 477 SWTSMITAYGSHGQAYVA-----LELFA---------EMLQSNMKPDRVTFLAILSACGH 522

Query: 411 LGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
            G   E    F QM  + GI P +  ++ +I    R G+++EA ++  Q
Sbjct: 523 AGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ 571


>gi|302802241|ref|XP_002982876.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
 gi|300149466|gb|EFJ16121.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
          Length = 923

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 227/792 (28%), Positives = 384/792 (48%), Gaps = 109/792 (13%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  L+  C    D+  G++IH  IL+NG      +++  +L+  Y KC + + A  +F  
Sbjct: 43  FAALIHKCARLHDLAQGRRIHGLILRNG--IEVGDFLGARLLAMYCKCGSPEEARAVFQG 100

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           ++ K+V +W ++IG+N R G  ++A   F EMQ  GV P++     VL ACG    V   
Sbjct: 101 IQDKSVVAWTSLIGVNARSGHPKEAFHLFREMQLQGVMPNDVTYVAVLGACGHPWEVDTI 160

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           RA       +  D  V VA+++++ YGKCGDL+ A  VFDG++ R+   WN+MI   V +
Sbjct: 161 RARVEACGSLELD--VIVATAVMNAYGKCGDLDSAWGVFDGILVRDAAVWNAMISLLVAH 218

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
              +EA+ +F +M L GV P + +  + L+A  +     E  + HA A     + D V+ 
Sbjct: 219 EQGDEALELFRQMRLGGVTPNKGTCVAALNACCHSRDFSEALRIHAFARELAGDADTVVQ 278

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI------------------------- 356
           ++++N Y K G ++DAE +F R+ ERD+V+WN ++                         
Sbjct: 279 TALVNMYGKFGKVDDAEEIFERIQERDVVSWNAMLTANACNGFHDKAFKCFREMLLVGEL 338

Query: 357 ---------------ASYVQSG---------------QSDVVVASSIVDMYAKCERIDNA 386
                          A++++ G                 DVV+ ++I++MY++C+   + 
Sbjct: 339 PSRITYVAILNACFLAAHLKHGDFVKTLAVEGGCGIESVDVVMGTAIMNMYSRCK---SP 395

Query: 387 KQVFNSIIL----RD---VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS---- 435
           K  F+S +L    RD   +++WNT+L+ Y +  +  EA  +F  M L G++ + +S    
Sbjct: 396 KSAFSSSLLLEQDRDQPSIMMWNTVLSLYVENEQFEEAFTIFRLMLLGGVTIDTVSLMTV 455

Query: 436 --------------W-----------------NSVILGFLRNGQMNEAKDMFLQMQSLGV 464
                         W                 N+++  + R G + +A+++F  M +   
Sbjct: 456 FNACGSSASLEKGKWIHSLLTESELTRKTPVQNALVTMYARLGSLEDAREIFDAMTT--- 512

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
             N+I+WT ++   +Q     EA+  F+ +L  G+ P+  T T  L+AC ++AS+   + 
Sbjct: 513 -RNVISWTAMVGVHSQLGLNREALRIFRSILLEGVAPNEVTFTAVLNACGNLASIPAAKL 571

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           +   L          +   L+    KCG++ +    F +   K    +N  I+  A HG 
Sbjct: 572 VQACLSETGFFGNVEVANGLLCTLGKCGSLEEVANFFQVMAVKNQVSWNTAIAANAQHGN 631

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG 644
            V  + LF+ +Q +GID  S+T   +L++CSHAGLV +G   F+ M  D+      EH+ 
Sbjct: 632 GVRGVELFQTMQLEGIDTGSVTLIGVLSSCSHAGLVAQGYSYFLNMHVDYGFPAEAEHYS 691

Query: 645 CVVNLLSRCGNLDEALRVILTMP-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
           CV++LLSR G L+ A   +  +P  D       +LL  C    + E     ++ +L L P
Sbjct: 692 CVIDLLSRAGWLEHAEEFVKRLPFGDQSVFPWITLLCGCKLHGDLERGGRATQRILGLNP 751

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHP 763
            + G Y+ + N YA +G+W E + VR  M E G +K PG SWI++   +H F   D SHP
Sbjct: 752 GSTGPYLVMHNLYAGAGKWPEAAAVRKSMVELGPKKEPGLSWIEVKGRIHEFRVGDTSHP 811

Query: 764 KTEEIYATLALL 775
           ++ EI+  L  L
Sbjct: 812 RSSEIHRELERL 823



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 159/574 (27%), Positives = 270/574 (47%), Gaps = 94/574 (16%)

Query: 175 EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLE 234
           +DG S D      ++  C  L  +  GR +HG +L+ G +   F+ + L+ MY KCG  E
Sbjct: 34  DDG-SADASTFAALIHKCARLHDLAQGRRIHGLILRNGIEVGDFLGARLLAMYCKCGSPE 92

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
           EAR VF G+  ++VVAW S+I    ++G  +EA  +F EM L+GV P  V+  ++L A  
Sbjct: 93  EARAVFQGIQDKSVVAWTSLIGVNARSGHPKEAFHLFREMQLQGVMPNDVTYVAVLGACG 152

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
           +   +D  +    V     +ELD ++ ++++N Y K G L+ A  VF  ++ RD   WN 
Sbjct: 153 HPWEVDTIRA--RVEACGSLELDVIVATAVMNAYGKCGDLDSAWGVFDGILVRDAAVWNA 210

Query: 355 LIASYVQ----------------------------------------------------S 362
           +I+  V                                                     +
Sbjct: 211 MISLLVAHEQGDEALELFRQMRLGGVTPNKGTCVAALNACCHSRDFSEALRIHAFARELA 270

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G +D VV +++V+MY K  ++D+A+++F  I  RDVV WN +L A A  G   +A + F 
Sbjct: 271 GDADTVVQTALVNMYGKFGKVDDAEEIFERIQERDVVSWNAMLTANACNGFHDKAFKCFR 330

Query: 423 QMQLEGISPNIISWNSV-----ILGFLRNGQ------------------------MN--- 450
           +M L G  P+ I++ ++     +   L++G                         MN   
Sbjct: 331 EMLLVGELPSRITYVAILNACFLAAHLKHGDFVKTLAVEGGCGIESVDVVMGTAIMNMYS 390

Query: 451 ---EAKDMF---LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
                K  F   L ++    QP+++ W T++S   +N    EA   F+ ML  G+   T 
Sbjct: 391 RCKSPKSAFSSSLLLEQDRDQPSIMMWNTVLSLYVENEQFEEAFTIFRLMLLGGVTIDTV 450

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           ++    +AC   ASL  G+ IH  L   +L   TP+  +LV MYA+ G++  A+ +FD  
Sbjct: 451 SLMTVFNACGSSASLEKGKWIHSLLTESELTRKTPVQNALVTMYARLGSLEDAREIFDAM 510

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
            ++ +  + AM+  ++  GL  EAL +F+++  +G+ P+ +TFT +LNAC +   +    
Sbjct: 511 TTRNVISWTAMVGVHSQLGLNREALRIFRSILLEGVAPNEVTFTAVLNACGNLASI-PAA 569

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           +L     S+     ++E    ++  L +CG+L+E
Sbjct: 570 KLVQACLSETGFFGNVEVANGLLCTLGKCGSLEE 603


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 208/658 (31%), Positives = 344/658 (52%), Gaps = 93/658 (14%)

Query: 211 VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270
           +GF+   FV SSLI +Y + G +E+AR++FD M  ++ V WN M+ G+V+ G    A++V
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDE-GKQAHAVAVINGMELDNVLGSSIINFYS 329
           F +M     +P  ++  S+LS  A+ +AL E G Q H + +  G   D ++ ++++  YS
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICAS-EALSEFGNQLHGLVISCGFHFDPLVANALVAMYS 119

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASY----------------VQSGQS-------- 365
           K G L DA  +F+ M + ++VTWN +IA +                + +G S        
Sbjct: 120 KFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFAS 179

Query: 366 ----------------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
                                       DV + S+++D+Y KC  +  A ++F      D
Sbjct: 180 FLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVD 239

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LG----- 442
           +V+   +++ Y   G + +A  +F  +  E +SPN ++  SV+          LG     
Sbjct: 240 IVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHA 299

Query: 443 --------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
                               + + G+++ A  +F +M     + + + W  +I+  +QN 
Sbjct: 300 NILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMP----EKDAVCWNAIITNCSQNG 355

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
              EAI  F++M   G+     +I+ ALSAC ++ +L +G+AIH ++I+          +
Sbjct: 356 KPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAES 415

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
           +L+DMY KCGN+  A+ VFD+   K    +N++I+ Y  HG    +LALF  + + GI P
Sbjct: 416 ALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQP 475

Query: 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
           D +TF  IL+AC HAG V++G++ F  M  ++ +   MEH+ C+V+L  R G L+EA   
Sbjct: 476 DHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFET 535

Query: 663 ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722
           I  MP  PD  + G+LL  C      ELAE  S  LL L+P+N G YV LSN +A +G+W
Sbjct: 536 IKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQW 595

Query: 723 NEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
             V ++R +MK++G++K PG SWI++ +  H+FVA D SHP++ +IY+ L  L + +R
Sbjct: 596 GSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVAADGSHPESAQIYSVLNNLLLELR 653



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 155/290 (53%), Gaps = 4/290 (1%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  C     +  G+++HA ILK+G       +V + ++  YAKC  LD+A ++F R+  
Sbjct: 281 VLPACAGLATLNLGKELHANILKHG--LDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPE 338

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           K+   W AII    + G  ++A+  F +M  +G+S D   +   L AC  L  +  G+A+
Sbjct: 339 KDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAI 398

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H +++K  FD  VF  S+LIDMYGKCG+L  AR VFD M  +N V+WNS+I  Y  +G  
Sbjct: 399 HSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHL 458

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSS 323
           E ++ +F++M  +G++P  V+  +ILSA  +   +D+G Q    +    G+       + 
Sbjct: 459 EVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYAC 518

Query: 324 IINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASS 372
           I++ + + G L +A E + +     D   W  L+ +    G  ++   +S
Sbjct: 519 IVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVAS 568


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  358 bits (919), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 216/698 (30%), Positives = 358/698 (51%), Gaps = 31/698 (4%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  LL+ C +      G  +H RIL +G   + + Y+ + L+ FYAK    DVA ++F  
Sbjct: 64  FPSLLKACSFLNLFSLGLTLHQRILVSG--LSLDAYIASSLINFYAKFGFADVARKVFDY 121

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  +NV  W  IIG   R G   +A   F EM+  G+ P +  + ++L     L  V   
Sbjct: 122 MPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHV--- 178

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +HG  +  GF   + +++S++++YGKCG++E +RK+FD M  R++V+WNS+I  Y Q 
Sbjct: 179 QCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQI 238

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G   E + +   M L+G E    +  S+LS +A+   L  G+  H   +  G  LD  + 
Sbjct: 239 GNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVE 298

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +S+I  Y K G ++ A     RM ER              S   DVV+ ++++    +  
Sbjct: 299 TSLIVVYLKGGKIDIA----FRMFER--------------SSDKDVVLWTAMISGLVQNG 340

Query: 382 RIDNAKQVFNSIILRDV----VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
             D A  VF  ++   V        +++ A A LG     + +   +  + +  ++ + N
Sbjct: 341 SADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQN 400

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           S++  + + G ++++  +F  M     + +L++W  +++G  QN    EA+  F EM   
Sbjct: 401 SLVTMYAKCGHLDQSSIVFDMMN----RRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSD 456

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
              P + TI   L  C     L  G+ IH ++IR+ L     + TSLVDMY KCG++  A
Sbjct: 457 NQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTA 516

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           +R F+  PS +L  ++A+I GY  HG    AL  +    + G+ P+ + F ++L++CSH 
Sbjct: 517 QRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHN 576

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           GLV +GL ++  M  D  + P +EH  CVV+LLSR G ++EA  V      DP   ++G 
Sbjct: 577 GLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKKKFPDPVLDVLGI 636

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           +L  C  +   EL + I+  +L L P + GN+V L++ YA+  +W EV +    M+  GL
Sbjct: 637 ILDACRANGNNELGDTIANDILMLRPMDAGNFVQLAHCYASINKWEEVGEAWTYMRSLGL 696

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           +K PG S+I I   +  F     SHP+ +EI  TL +L
Sbjct: 697 KKIPGWSFIDIHGTITTFFTDHNSHPQFQEIVCTLKIL 734



 Score =  219 bits (558), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 238/496 (47%), Gaps = 81/496 (16%)

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N+ I  +   G + + +  +  M    V     +  S+L A + L+    G   H   ++
Sbjct: 30  NATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILV 89

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ------- 364
           +G+ LD  + SS+INFY+K G  + A  VF  M ER++V W  +I  Y ++G+       
Sbjct: 90  SGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSL 149

Query: 365 ------------------------------------------SDVVVASSIVDMYAKCER 382
                                                     SD+ +++S++++Y KC  
Sbjct: 150 FDEMRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKCGN 209

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-- 440
           I+ ++++F+ +  RD+V WN+L++AYA +G   E   L   M+L+G      ++ SV+  
Sbjct: 210 IEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSV 269

Query: 441 --------LGFLRNGQMNEAK---------------------DMFLQMQSLGVQPNLITW 471
                   LG   +GQ+  A                      D+  +M       +++ W
Sbjct: 270 AASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLW 329

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           T +ISGL QN   ++A+  F++ML+ G+KPST T+   ++AC  + S   G +I GY++R
Sbjct: 330 TAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILR 389

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
            +L L      SLV MYAKCG++ Q+  VFD+   ++L  +NAM++GYA +G   EAL L
Sbjct: 390 QELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFL 449

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  ++     PDSIT  ++L  C+  G ++ G  +   +  +  ++P +     +V++  
Sbjct: 450 FNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRN-GLRPCILVDTSLVDMYC 508

Query: 652 RCGNLDEALRVILTMP 667
           +CG+LD A R    MP
Sbjct: 509 KCGDLDTAQRCFNQMP 524


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  358 bits (919), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 211/628 (33%), Positives = 334/628 (53%), Gaps = 67/628 (10%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM--YGKCGDLEEARKVFD--- 241
           N+L+ C  +      + +H  ++K G +  VFV S LI        GDL  A  +F+   
Sbjct: 33  NLLEKCKNINTF---KQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQ 89

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
                NV  WNS+I GY  +     ++ +F  M   GV+P   +   +  +     A  E
Sbjct: 90  QHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHE 149

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           GKQ HA A+   +  +  + +S+I+ Y+ VG ++ A +VF +   RD V++  LI  YV 
Sbjct: 150 GKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVS 209

Query: 362 SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
            G                C  +D+A+++F+ I ++DVV WN +++ Y   GR  EA   F
Sbjct: 210 QG----------------C--LDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCF 251

Query: 422 YQMQLEGISPN----------------------IISW-------------NSVILGFLRN 446
           Y+MQ   + PN                      I SW             N++I  + + 
Sbjct: 252 YEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKC 311

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G+ + A+++F  ++    + ++I+W T+I G +  S   EA+  F+ ML + +KP+  T 
Sbjct: 312 GETDIARELFDGIE----EKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTF 367

Query: 507 TCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
              L AC  + +L  G+ +H Y+ ++        + TSL+DMYAKCG I  A+RVF    
Sbjct: 368 LGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMH 427

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPDSITFTNILNACSHAGLVNEGL 624
           S+ L  +NAM+SG+AMHG A  ALALF  +  KG+  PD ITF  +L+AC+ AGLV+ G 
Sbjct: 428 SRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGH 487

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
           + F  M  D+ + P ++H+GC+++LL+R    +EA  ++  M  +PD  I GSLLS C  
Sbjct: 488 QYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKA 547

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
               E  EY++E L QLEP+N G +V LSN YA +GRW++V+++R  + +KG++K PGC+
Sbjct: 548 HGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCT 607

Query: 745 WIQIGEELHVFVACDRSHPKTEEIYATL 772
            I+I  ++H F+  D+ HP+   IY  L
Sbjct: 608 SIEIDGDVHEFLVGDKFHPECNNIYKML 635



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/426 (30%), Positives = 204/426 (47%), Gaps = 51/426 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC--------------- 129
           L + C   +  + G+Q+HA  LK    F  N +V T ++  YA                 
Sbjct: 137 LFKSCTKAKATHEGKQLHAHALKLALHF--NPHVHTSVIHMYASVGEMDFARLVFDKSSL 194

Query: 130 -DA---------------LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
            DA               LD A RLF  + VK+V SW A+I    + G  E+A++ F EM
Sbjct: 195 RDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEM 254

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           QE  V P+   +  VL ACG       G+ +  +V   GF   + + ++LIDMY KCG+ 
Sbjct: 255 QEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGET 314

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           + AR++FDG+  ++V++WN+MI GY    L EEA+ +F  M    V+P  V+   IL A 
Sbjct: 315 DIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHAC 374

Query: 294 ANLDALDEGKQAHAVAVINGMELDNV-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
           A L ALD GK  HA    N     N  L +S+I+ Y+K G +E AE VF  M  R++ +W
Sbjct: 375 ACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASW 434

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
           N +++ +   G ++  +A               ++ V   +   D + +  +L+A    G
Sbjct: 435 NAMLSGFAMHGHAERALALF-------------SEMVNKGLFRPDDITFVGVLSACTQAG 481

Query: 413 RSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
                 + F  M Q  GISP +  +  +I    R  +  EA+   + M+++ ++P+   W
Sbjct: 482 LVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAE---ILMKNMEMEPDGAIW 538

Query: 472 TTLISG 477
            +L+S 
Sbjct: 539 GSLLSA 544



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 130/489 (26%), Positives = 219/489 (44%), Gaps = 69/489 (14%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC- 140
           Y  LL+ C   +++ T +QIH+ I+K G       +V++KL+ F A   + D++  L   
Sbjct: 31  YLNLLEKC---KNINTFKQIHSLIIKTG--LNNTVFVQSKLIHFCAVSPSGDLSYALSLF 85

Query: 141 ----RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
               +    NVF W ++I           +L  F  M   GV P++   P + K+C    
Sbjct: 86  EENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAK 145

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA-------------------- 236
               G+ +H + LK+       V +S+I MY   G+++ A                    
Sbjct: 146 ATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALIT 205

Query: 237 -----------RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
                      R++FD +  ++VV+WN+MI GYVQ+G  EEAI  FYEM    V P + +
Sbjct: 206 GYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKST 265

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           +  +LSA  +  + + GK   +    NG   +  L +++I+ Y K G  + A  +F  + 
Sbjct: 266 MVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIE 325

Query: 346 ERDIVTWNLLIASYV-----------------QSGQSDVVVASSIVDMYAKCERIDNAKQ 388
           E+D+++WN +I  Y                   + + + V    I+   A    +D  K 
Sbjct: 326 EKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKW 385

Query: 389 VFNSII--LR---DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           V   I   LR   +  LW +L+  YA  G    A R+F  M     S N+ SWN+++ GF
Sbjct: 386 VHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMH----SRNLASWNAMLSGF 441

Query: 444 LRNGQMNEAKDMFLQMQSLGV-QPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKP 501
             +G    A  +F +M + G+ +P+ IT+  ++S  TQ    +    +F+ M++  GI P
Sbjct: 442 AMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISP 501

Query: 502 STTTITCAL 510
                 C +
Sbjct: 502 KLQHYGCMI 510


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  358 bits (918), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 199/650 (30%), Positives = 342/650 (52%), Gaps = 93/650 (14%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VF+ + ++  YGKCG +  AR  FD +  +N  +W SM+  Y QNG    A+ ++  M L
Sbjct: 58  VFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDL 117

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHA-VAVINGMELDNVLGSSIINFYSKVGLLE 335
           +   P  V  T++L A A++ AL+EGK  H+ ++   G++LD +L +S++  Y+K G LE
Sbjct: 118 Q---PNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLE 174

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSG-------------------------------- 363
           DA+ +F RM  R + +WN +IA+Y QSG                                
Sbjct: 175 DAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLG 234

Query: 364 -----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                            + D+ + ++++ MYA+C+ +D+A ++F  +  RDVV W+ ++A
Sbjct: 235 LLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIA 294

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL-----GFLRNGQ------------- 448
           A+A+     EA   + +MQLEG+ PN  ++ SV+L     G LR G+             
Sbjct: 295 AFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKI 354

Query: 449 -----------------MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
                            ++EA+ +F Q+++     +   WT LI G ++       +  +
Sbjct: 355 TLVNGTALVDLYTSYGSLDEARSLFDQIEN----RDEGLWTVLIGGYSKQGHRTGVLELY 410

Query: 492 QEMLETGIKPSTTTI-TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           +EM  T   P+T  I +C +SAC  + +  + R  H  +    +     + TSLV+MY++
Sbjct: 411 REMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSR 470

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
            GN+  A++VFD   S++   +  +I+GYA HG    AL L+K ++ +G +P  +TF  +
Sbjct: 471 WGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVV 530

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L ACSHAGL  +G +LF+ + SD+ + P++ H+ C+++LLSR G L +A  +I  MP +P
Sbjct: 531 LYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEP 590

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
           +     SLL       + + A + +  + +L+P +P +YV LSN +A +G    ++ VR+
Sbjct: 591 NDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRN 650

Query: 731 IMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            M  +G++K  G SWI++ +++H F   D SHP+ +EI+A L  L   ++
Sbjct: 651 TMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIK 700


>gi|242089043|ref|XP_002440354.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
 gi|241945639|gb|EES18784.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
          Length = 866

 Score =  358 bits (918), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 210/624 (33%), Positives = 333/624 (53%), Gaps = 29/624 (4%)

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC-VFVASSLI 224
           A+  F EM+  GV+PD +     L ACG  G    G+AVH +  K G       V   L 
Sbjct: 167 AIAAFGEMRARGVAPDGYACARALHACGRAGAPREGQAVHAHAAKAGHVAAHPLVPGFLA 226

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG---VEP 281
            MY +  D+  AR+V +   A   VAWN ++    + GL ++A+ +   M   G   +EP
Sbjct: 227 GMYAESADVGAARRVLETEDA-PPVAWNVVVACCARLGLVDDALDLAERMARSGRLELEP 285

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVI-----NGMELDNVLGSSIINFYSKVGLLED 336
           +  +  ++LS  A       G+   A  V+      G++ D+   SS++   + +GLL  
Sbjct: 286 SLATWNAVLSGCAR-----NGRDREAFGVVRIMLDQGLQPDSSSMSSLLKSVASLGLLAH 340

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
                  M        N L        + DV   ++ VDMYAKC  ++ A++VF+++ LR
Sbjct: 341 G------MEAHGFFLRNQL--------EPDVYTGTAFVDMYAKCGHLEYAQKVFDTLELR 386

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           ++  WN+L+A YA+ G+   A  L  +M+   + P++ +WN +I G+  NG+ ++A  + 
Sbjct: 387 NITTWNSLVAGYANAGQFDHALDLVEEMKRNRLDPDVTTWNGLINGYSVNGKSSQAVLLL 446

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            Q++++G+ PN+++WT+LISG   N    ++  FF EM +  ++PS  T++  L AC  +
Sbjct: 447 RQIKAIGLTPNVVSWTSLISGSCNNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGL 506

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           A L+ G+ +H + +R        + T+L+DMY+K GN+  A+R+F+      L   NAM+
Sbjct: 507 ALLKKGKELHCFALRRAYDRDMVVGTALIDMYSKSGNLASAQRIFERIQENNLVSSNAML 566

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +G A HG   EA+ALF ++   G+ PDSITFT +L AC    LV EG E F  M S + V
Sbjct: 567 TGLAAHGQGHEAIALFHDMCNSGLKPDSITFTALLTACRSMDLVTEGWEYFDTMESRYGV 626

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
            P++E++ C+V+LL+RCG LDEA+  I   P    + + G+LL+ C       LAE  + 
Sbjct: 627 TPTVENYACMVDLLARCGYLDEAMDFINKSPFKSVSSLWGALLTGCTLHGNLALAEAAAR 686

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
            L +LEP N  NY+ + + Y     ++E   ++  MK + L   PG SWIQI + +HVF 
Sbjct: 687 KLFKLEPYNSANYLQMVSLYEHEQMFDEAESLKYAMKARALDTRPGWSWIQIEQSIHVFE 746

Query: 757 ACDRSHPKTEEIYATLALLGMHVR 780
              + HP T EIY  L  L   +R
Sbjct: 747 VEGKPHPDTAEIYEELIRLVFQIR 770



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 126/539 (23%), Positives = 217/539 (40%), Gaps = 128/539 (23%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILK 107
           +++ L++ ++  +A+    EM+ R   + P+ Y     L  C        GQ +HA   K
Sbjct: 154 RVAMLAEAEEWGDAIAAFGEMRARG--VAPDGYACARALHACGRAGAPREGQAVHAHAAK 211

Query: 108 NGDF--------FARNEYVETKLV------------------VFYAKC-------DALDV 134
            G          F    Y E+  V                  V  A C       DALD+
Sbjct: 212 AGHVAAHPLVPGFLAGMYAESADVGAARRVLETEDAPPVAWNVVVACCARLGLVDDALDL 271

Query: 135 ASRLFCRLRVK---NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           A R+    R++   ++ +W A++    R G   +A      M + G+ PD+  + ++LK+
Sbjct: 272 AERMARSGRLELEPSLATWNAVLSGCARNGRDREAFGVVRIMLDQGLQPDSSSMSSLLKS 331

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
             +LG +  G   HG+ L+   +  V+  ++ +DMY KCG LE A+KVFD +  RN+  W
Sbjct: 332 VASLGLLAHGMEAHGFFLRNQLEPDVYTGTAFVDMYAKCGHLEYAQKVFDTLELRNITTW 391

Query: 252 NSMIVGYVQ-----------------------------------NGLNEEAIRVFYEMTL 276
           NS++ GY                                     NG + +A+ +  ++  
Sbjct: 392 NSLVAGYANAGQFDHALDLVEEMKRNRLDPDVTTWNGLINGYSVNGKSSQAVLLLRQIKA 451

Query: 277 EGVEPTRVSVTSILSASAN-----------------------------------LDALDE 301
            G+ P  VS TS++S S N                                   L  L +
Sbjct: 452 IGLTPNVVSWTSLISGSCNNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGLALLKK 511

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           GK+ H  A+    + D V+G+++I+ YSK G L  A+ +F R+ E ++V+ N ++     
Sbjct: 512 GKELHCFALRRAYDRDMVVGTALIDMYSKSGNLASAQRIFERIQENNLVSSNAMLTGLAA 571

Query: 362 SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
            GQ    +A      +  C          NS +  D + +  LL A   +    E    F
Sbjct: 572 HGQGHEAIAL----FHDMC----------NSGLKPDSITFTALLTACRSMDLVTEGWEYF 617

Query: 422 YQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
             M+   G++P + ++  ++    R G ++EA D F+         +L  W  L++G T
Sbjct: 618 DTMESRYGVTPTVENYACMVDLLARCGYLDEAMD-FINKSPFKSVSSL--WGALLTGCT 673



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 138/320 (43%), Gaps = 44/320 (13%)

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           + W   ++ L +     +AI  F EM   G+ P       AL AC    + R G+A+H +
Sbjct: 149 VLWNKRVAMLAEAEEWGDAIAAFGEMRARGVAPDGYACARALHACGRAGAPREGQAVHAH 208

Query: 529 LIRHDLCLPTPIVTS-LVDMYAKCGNIHQAKRVF---DISP------------------- 565
             +       P+V   L  MYA+  ++  A+RV    D  P                   
Sbjct: 209 AAKAGHVAAHPLVPGFLAGMYAESADVGAARRVLETEDAPPVAWNVVVACCARLGLVDDA 268

Query: 566 ---------------SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
                             L  +NA++SG A +G   EA  + + +  +G+ PDS + +++
Sbjct: 269 LDLAERMARSGRLELEPSLATWNAVLSGCARNGRDREAFGVVRIMLDQGLQPDSSSMSSL 328

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L + +  GL+  G+E   G F  +Q++P +      V++ ++CG+L+ A +V  T+    
Sbjct: 329 LKSVASLGLLAHGMEAH-GFFLRNQLEPDVYTGTAFVDMYAKCGHLEYAQKVFDTLELR- 386

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLL--QLEPDNPGNYVALSNAYAASGRWNEVSQV 728
           +     SL++    + + + A  + E +   +L+PD    +  L N Y+ +G+ ++   +
Sbjct: 387 NITTWNSLVAGYANAGQFDHALDLVEEMKRNRLDPDVT-TWNGLINGYSVNGKSSQAVLL 445

Query: 729 RDIMKEKGLRKNPGCSWIQI 748
              +K  GL  N   SW  +
Sbjct: 446 LRQIKAIGLTPNV-VSWTSL 464


>gi|242073178|ref|XP_002446525.1| hypothetical protein SORBIDRAFT_06g017520 [Sorghum bicolor]
 gi|241937708|gb|EES10853.1| hypothetical protein SORBIDRAFT_06g017520 [Sorghum bicolor]
          Length = 910

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 223/726 (30%), Positives = 376/726 (51%), Gaps = 45/726 (6%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD---ALDVASRLFCR 141
           ++  C     + TG+ +H  ++K G     +      LV  YAKC    A+D A R F  
Sbjct: 187 IVPACAKWGHLRTGRSVHGYVVKTG--LESDTLCGNALVSMYAKCGGSRAMDDAHRAFSS 244

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF- 200
           +R K+V SW ++I       L ++AL  F +M   G  P+   + ++L  C    +  + 
Sbjct: 245 IRCKDVVSWNSVIAGYIENRLFQEALALFGQMTSQGSLPNYSTVASILPVCSFTEFGRYH 304

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ VH +V++ G +  V V+++L+  Y K  +++    +F  M  R++V+WN++I GYV 
Sbjct: 305 GKEVHSFVVRHGLEMDVSVSNALMTHYSKVLEVKAVESIFMSMDVRDIVSWNTIIAGYVM 364

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL-DNV 319
           NG +  A+ +F+E+   G+ P  VS  S+L+A A +  +  G   H   +   + L +  
Sbjct: 365 NGYHYRALGLFHELLSTGIAPDSVSFISLLTACAQVGDVKAGMGVHGYILQRPVLLQETS 424

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           L ++++ FYS     +DA   F+ ++ +D ++WN ++++   S Q    +    V M   
Sbjct: 425 LMNALVTFYSHCDRFDDAFRAFTDILNKDSISWNAILSACAHSEQH---IEKFFVLMSEM 481

Query: 380 CERID--NAKQVFNSI---------ILRDVVLW-------------NTLLAAYADLGRSG 415
           C  ++  ++  V N I         ++R+   W             N +L AY   G S 
Sbjct: 482 CRGVNQWDSVTVLNVIHVSTFCGIKMVREAHGWSLRVGYTGETSVANAILDAYVKCGYSH 541

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           +A+ LF          N ++ N +I  +L+N  + +A+ +F  M     + +L +W  +I
Sbjct: 542 DANILFRNHG----GRNTVTDNIMISCYLKNNCIEDAEVIFNHM----AEKDLTSWNLMI 593

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
               QN   ++A   F  +   G+KP   +IT  L AC  + S++  R  H Y++R  L 
Sbjct: 594 QLYAQNHMDDQAFSLFNHLQSEGLKPDLVSITNILEACIHLCSVQLVRQCHAYMLRASL- 652

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
               +  +LVD Y+KCGNI  A  +F++S SK+L  + AMI  YAMHG+A +A+ LF  +
Sbjct: 653 EDIHLEGALVDAYSKCGNITNAYNIFEVS-SKDLVTFTAMIGCYAMHGMAEKAVELFSKM 711

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
            +  I PD +  T +L+ACSHAGLV+ G+++F  +   H+V P+ EH+ C+V+LL+R G+
Sbjct: 712 IKLDIRPDHVVLTTLLSACSHAGLVDAGIKIFKSIGEIHRVVPTAEHYACMVDLLARSGH 771

Query: 656 LDEALRVILTMPCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
           L +A    L MP    +A+   SLL  C    E ++ +  ++ L  +E  + GNYV +SN
Sbjct: 772 LQDAYMFALDMPPHAVNANAWSSLLGACKVHGEIKIGQLAADQLFSMEEGDIGNYVIMSN 831

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            YAA  +W+ V  VR +MK K ++K  GCSWI++ +  H+F A D +H     IY  L  
Sbjct: 832 IYAADEKWDGVEHVRKLMKSKDMKKPAGCSWIEVDKTRHLFKASDTNHQDRSCIYDMLGS 891

Query: 775 LGMHVR 780
           L   ++
Sbjct: 892 LYQQIK 897



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 140/568 (24%), Positives = 254/568 (44%), Gaps = 87/568 (15%)

Query: 173 MQEDGVSPDNFVLPNVLKACGAL--GWVGFGRAVHGYVLKVG-FDGCVFVASSLIDMYGK 229
           M  +G+ P    L   +++  AL  G     R +HG  +K G       VA +++D YG+
Sbjct: 63  MLAEGLRPGALELAAAIRSASALPGGGGALARCLHGLAVKSGRVASSATVAKAVMDAYGR 122

Query: 230 -CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV----EPTRV 284
             G L +A  VFD M   + V WN +I    + GL E+A  +F  M   GV     PT V
Sbjct: 123 RLGSLADALLVFDEMARPDAVCWNILITACSRRGLFEDAFVLFRSMLSCGVVEQSMPTAV 182

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG---LLEDAEVVF 341
           +V  I+ A A    L  G+  H   V  G+E D + G+++++ Y+K G    ++DA   F
Sbjct: 183 TVAVIVPACAKWGHLRTGRSVHGYVVKTGLESDTLCGNALVSMYAKCGGSRAMDDAHRAF 242

Query: 342 SRMVERDIVTWNLLIASYVQ--------------SGQSDVVVASSIVDMYAKCERID--- 384
           S +  +D+V+WN +IA Y++              + Q  +   S++  +   C   +   
Sbjct: 243 SSIRCKDVVSWNSVIAGYIENRLFQEALALFGQMTSQGSLPNYSTVASILPVCSFTEFGR 302

Query: 385 -NAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
            + K+V +S ++R     DV + N L+  Y+ +        +F  M +     +I+SWN+
Sbjct: 303 YHGKEV-HSFVVRHGLEMDVSVSNALMTHYSKVLEVKAVESIFMSMDVR----DIVSWNT 357

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I G++ NG    A  +F ++ S G+ P+ +++ +L                        
Sbjct: 358 IIAGYVMNGYHYRALGLFHELLSTGIAPDSVSFISL------------------------ 393

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL-PTPIVTSLVDMYAKCGNIHQA 557
                      L+AC  V  ++ G  +HGY+++  + L  T ++ +LV  Y+ C     A
Sbjct: 394 -----------LTACAQVGDVKAGMGVHGYILQRPVLLQETSLMNALVTFYSHCDRFDDA 442

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSH 616
            R F    +K+   +NA++S  A     +E   +  +   +G++  DS+T  N+++  + 
Sbjct: 443 FRAFTDILNKDSISWNAILSACAHSEQHIEKFFVLMSEMCRGVNQWDSVTVLNVIHVSTF 502

Query: 617 AG--LVNE--GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
            G  +V E  G  L VG   +  V  +      +++   +CG   +A  ++       + 
Sbjct: 503 CGIKMVREAHGWSLRVGYTGETSVANA------ILDAYVKCGYSHDA-NILFRNHGGRNT 555

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQ 700
                ++S  +K+N  E AE I  H+ +
Sbjct: 556 VTDNIMISCYLKNNCIEDAEVIFNHMAE 583


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 201/607 (33%), Positives = 320/607 (52%), Gaps = 54/607 (8%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDM---YGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
           R +H  ++K G     +  S L+++         L  A  VF+ +   N++ WN+M  G+
Sbjct: 50  RLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 109

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             +     A++++  M   G+ P   +   +L + A   A  EG+Q H   +  G +LD 
Sbjct: 110 ALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDL 169

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
            + +S+I+ Y + G LEDA  VF R   RD+V++  LI  Y   G               
Sbjct: 170 FVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGY-------------- 215

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
               I++A+++F+ I ++DVV WN +++ YA+ G   EA  LF +M    I P+  +  +
Sbjct: 216 ----IESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVT 271

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNL------------------------------ 468
           V+    ++G +   + +   +   G   NL                              
Sbjct: 272 VVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKD 331

Query: 469 -ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
            I+W TLI G T  +   EA+L FQEML +G +P+  T+   L AC  + ++  GR IH 
Sbjct: 332 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHV 391

Query: 528 YLIRH--DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           Y+ +        + + TSL+DMYAKCG+I  A +VF+    K L  +NAMI G+AMHG A
Sbjct: 392 YIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRA 451

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
             A  +F  +++ GI+PD ITF  +L+ACS +G+++ G  +F  M  D+++ P +EH+GC
Sbjct: 452 DAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGC 511

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           +++LL   G   EA  +I  M  +PD  I  SLL  C      EL E  +++L+++EP+N
Sbjct: 512 MIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPEN 571

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
           PG YV LSN YA +GRWNEV+++R ++ +KG++K PGCS I+I   +H F+  D+ HP+ 
Sbjct: 572 PGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 631

Query: 766 EEIYATL 772
            EIY  L
Sbjct: 632 REIYGML 638



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 172/685 (25%), Positives = 298/685 (43%), Gaps = 118/685 (17%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV---VFYAKCDALDVASRLFCR 141
           LL  C   + + + + IHA+++K G       Y  +KL+   V     D L  A  +F  
Sbjct: 39  LLHNC---KTLQSLRLIHAQMIKTG--LHNTNYALSKLLELCVISPHFDGLPYAISVFET 93

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           ++  N+  W  +   +        AL  +V M   G+ P+++  P +LK+C        G
Sbjct: 94  IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEG 153

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-------------------- 241
           + +HG+VLK+G+D  +FV +SLI +Y + G LE+ARKVFD                    
Sbjct: 154 QQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASR 213

Query: 242 GMI-----------ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G I            ++VV+WN+MI GY + G  +EA+ +F EM    + P   ++ +++
Sbjct: 214 GYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVV 273

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA A   +++ G+Q H+    +G   +  + +S+++ YSK G LE A  +F  ++ +D++
Sbjct: 274 SACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVI 333

Query: 351 TWNLLIASY----------------VQSGQ--SDVVVAS--------------------- 371
           +WN LI  Y                ++SG+  +DV + S                     
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYI 393

Query: 372 ---------------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
                          S++DMYAKC  I+ A QVFNSI+ + +  WN ++  +A  GR+  
Sbjct: 394 DKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLI 475
           A  +F +M+  GI P+ I++  ++    R+G ++  + +F  M Q   + P L  +  +I
Sbjct: 454 AFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMI 513

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA-LSACTDVASLRNGRAIHGYLIRHDL 534
             L  +    EA    +EM+          I C+ L AC    ++  G +    LI+ + 
Sbjct: 514 DLLGHSGLFKEA----EEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEP 569

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRV---FDISPSKELP---------VYNAMISGYAMH 582
             P   V  L ++YA  G  ++  ++    +    K++P         V +  I G   H
Sbjct: 570 ENPGCYVL-LSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 628

Query: 583 GLAVEALALFKN----LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
               E   + +     L++ G  PD+      +      G +    E     F     KP
Sbjct: 629 PRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 688

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVI 663
             +    +V  L  C N  EA ++I
Sbjct: 689 GTKL--TIVKNLRVCRNCHEATKLI 711



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 179/380 (47%), Gaps = 20/380 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++    +EA++L  EM   N +        ++  C     +  G+Q+H+ I
Sbjct: 233 SWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWI 292

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             +G  F  N  +   L+  Y+KC  L+ A  LF  L  K+V SW  +IG    + L ++
Sbjct: 293 DDHG--FGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKE 350

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV---LKVGFDGCVFVASS 222
           AL+ F EM   G  P++  + ++L AC  LG +  GR +H Y+   LK   +    + +S
Sbjct: 351 ALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASS-LRTS 409

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LIDMY KCGD+E A +VF+ ++ +++ +WN+MI G+  +G  + A  +F  M   G+EP 
Sbjct: 410 LIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPD 469

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLED 336
            ++   +LSA +    LD G+      +   M  D  +   +      I+     GL ++
Sbjct: 470 DITFVGLLSACSRSGMLDLGRH-----IFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKE 524

Query: 337 AEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
           AE + + M +E D V W  L+ +    G  +V +  S      K E  +    V  S I 
Sbjct: 525 AEEMINNMEMEPDGVIWCSLLKACKIRG--NVELGESFAQNLIKIEPENPGCYVLLSNIY 582

Query: 396 RDVVLWNTLLAAYADLGRSG 415
                WN +    A L   G
Sbjct: 583 ATAGRWNEVAKIRALLNDKG 602


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 200/609 (32%), Positives = 326/609 (53%), Gaps = 62/609 (10%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLID---MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
           R +H  ++K G     +  S L++   +      L  A  VFD +    ++ WN+M  G+
Sbjct: 19  RIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFRGH 78

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             +     A++++  M   G+ P   +   +L + A   A  EG+Q H   +  G +LD 
Sbjct: 79  ALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDL 138

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
            + +S+I+ Y + G LEDA+ V  +   RD+V++  LI  Y   G               
Sbjct: 139 YIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGX-------------- 184

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------ 432
               I++A ++F+ I ++DVV WN  ++ YA+ G   EA  LF +M    + P+      
Sbjct: 185 ----IESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVT 240

Query: 433 ----------------IISW-------------NSVILGFLRNGQMNEAKDMFLQMQSLG 463
                           + SW             N++I  + + G++  A  +F  + +  
Sbjct: 241 VLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSN-- 298

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
              ++I+W TLI G T  +   EA+L FQ+ML +G KP+  T+   LSAC  + ++  GR
Sbjct: 299 --KDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGR 356

Query: 524 AIHGYLIRH--DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
            IH Y+ +    +   + + TSL+DMYAKCG+I  A++VFD   ++ L  +NAMI G+AM
Sbjct: 357 WIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAM 416

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HG A  A  +F  +++ GI+PD ITF  +L+ACSH+G+++ G  +F  M  D+++ P +E
Sbjct: 417 HGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLE 476

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+GC+++L    G   EA ++I TM  +PD  I  SLL  C      EL E  +++L+++
Sbjct: 477 HYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKI 536

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           EP+NPG+YV LSN YA + RWNEV++ R ++ +KG++K PGCS I+I   +H F+  D+ 
Sbjct: 537 EPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKF 596

Query: 762 HPKTEEIYA 770
           HP+  EIY 
Sbjct: 597 HPRNREIYG 605



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 205/427 (48%), Gaps = 57/427 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNG------------DFFARNEYVE------------- 119
           LL+ C        GQQ+H ++LK G              + +N  +E             
Sbjct: 109 LLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRD 168

Query: 120 ----TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
               T L+  YA    ++ A ++F  + VK+V SW A I      G  ++AL  F +M +
Sbjct: 169 VVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMK 228

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
             V PD   +  VL AC   G +  GR VH ++   GF   + + ++LID+Y KCG+LE 
Sbjct: 229 TNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELET 288

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A  +F G+  ++V++WN++I GY    L +EA+ +F +M   G +P  V++ SILSA A+
Sbjct: 289 ACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAH 348

Query: 296 LDALDEGKQAHAV--AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           L A+D G+  H      + G+   + L +S+I+ Y+K G +E A+ VF  M+ R + +WN
Sbjct: 349 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWN 408

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA----AYA 409
            +I  +   G+     A++  D++++  +        N I   D+     L A       
Sbjct: 409 AMIFGFAMHGR-----ANAAFDIFSRMRK--------NGIEPDDITFVGLLSACSHSGML 455

Query: 410 DLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
           DLGR      +F  M  +  + P +  +  +I     +G   EA+ M   M+   ++P+ 
Sbjct: 456 DLGR-----HIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTME---MEPDG 507

Query: 469 ITWTTLI 475
           + W +L+
Sbjct: 508 VIWCSLL 514



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 132/521 (25%), Positives = 234/521 (44%), Gaps = 96/521 (18%)

Query: 101 IHARILKNGDFFARNEYVETKLV---VFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           IHA+++K G       Y  +KL+   V     D L  A  +F  ++   +  W  +   +
Sbjct: 21  IHAQMIKTG--LHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFRGH 78

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
                   AL  +V M   G+ P+++  P +LK+C        G+ +HG VLK GFD  +
Sbjct: 79  ALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDL 138

Query: 218 FVASSLIDMYGKCGDLEEARKV-------------------------------FDGMIAR 246
           ++ +SLI MY + G LE+A+KV                               FD +  +
Sbjct: 139 YIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVK 198

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           +VV+WN+ I GY + G  +EA+ +F +M    V P   ++ ++LSA A   +++ G+Q H
Sbjct: 199 DVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVH 258

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY------- 359
           +    +G   +  + +++I+ YSK G LE A  +F  +  +D+++WN LI  Y       
Sbjct: 259 SWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYK 318

Query: 360 ---------VQSGQ--SDVVVAS------------------------------------S 372
                    ++SG+  +DV + S                                    S
Sbjct: 319 EALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS 378

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           ++DMYAKC  I+ A+QVF+S++ R +  WN ++  +A  GR+  A  +F +M+  GI P+
Sbjct: 379 LIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPD 438

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
            I++  ++     +G ++  + +F  M +   + P L  +  +I     +    EA    
Sbjct: 439 DITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEA---- 494

Query: 492 QEMLETGIKPSTTTITCA-LSACTDVASLRNGRAIHGYLIR 531
           ++M+ T        I C+ L AC    ++  G +    LI+
Sbjct: 495 EKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIK 535



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 179/379 (47%), Gaps = 18/379 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++    +EA++L  +M   N +        +L  C     +  G+Q+H+ I
Sbjct: 202 SWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWI 261

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             +G  F  N  +   L+  Y+KC  L+ A  LF  L  K+V SW  +IG    + L ++
Sbjct: 262 NDHG--FGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKE 319

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSL 223
           AL+ F +M   G  P++  + ++L AC  LG +  GR +H Y+ K   G      + +SL
Sbjct: 320 ALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSL 379

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           IDMY KCGD+E A++VFD M+ R++ +WN+MI G+  +G    A  +F  M   G+EP  
Sbjct: 380 IDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDD 439

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDA 337
           ++   +LSA ++   LD G+      +   M  D  L   +      I+     GL ++A
Sbjct: 440 ITFVGLLSACSHSGMLDLGRH-----IFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEA 494

Query: 338 EVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           E + + M +E D V W  L+ +    G  +V +  S      K E  +    V  S I  
Sbjct: 495 EKMINTMEMEPDGVIWCSLLKACKMHG--NVELGESYAQNLIKIEPENPGSYVLLSNIYA 552

Query: 397 DVVLWNTLLAAYADLGRSG 415
               WN +    A L   G
Sbjct: 553 TAERWNEVAKTRALLNDKG 571


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 187/558 (33%), Positives = 315/558 (56%), Gaps = 53/558 (9%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           F  ++L+  Y K G ++  +  FD M  R+ V++N+ I G+  N   +E++ +F  M  E
Sbjct: 90  FSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQRE 149

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G EPT  ++ SIL+ASA L  L  GKQ H   ++      N LG+  I            
Sbjct: 150 GFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVR-----NFLGNVFI------------ 192

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
                         WN                  ++ DMYAKC  I+ A+ +F+ +  ++
Sbjct: 193 --------------WN------------------ALTDMYAKCGEIEQARWLFDCLTKKN 220

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFL 457
           +V WN +++ YA  G+  +   L +QM+L G  P+ ++ +++I  + + G+++EA+ +F 
Sbjct: 221 LVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFS 280

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
           + +    + +++ WT ++ G  +N    +A+L F EML   I+P + T++  +S+C  +A
Sbjct: 281 EFK----EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLA 336

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           SL +G+A+HG  I   L     + ++L+DMY+KCG I  A+ VF++ P++ +  +NAMI 
Sbjct: 337 SLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIV 396

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
           G A +G   +AL LF+N+ Q+   PD++TF  IL+AC H   + +G E F  + + H + 
Sbjct: 397 GCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMT 456

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
           P+++H+ C+VNLL R G +++A+ +I  M  DPD  I  +LLS C    +   AE  + H
Sbjct: 457 PTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARH 516

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVA 757
           L +L+P     Y+ LSN YA+ GRW +V+ VR++MK K ++K  G SWI+I  E+H F +
Sbjct: 517 LFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTS 576

Query: 758 CDRSHPKTEEIYATLALL 775
            DR+HP++E+IY  L +L
Sbjct: 577 EDRTHPESEDIYEKLNML 594



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 140/572 (24%), Positives = 272/572 (47%), Gaps = 66/572 (11%)

Query: 54  LSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFA 113
           +  +  +R++VDLL    C       E Y +L+  CV   ++   +++ +  +++  F  
Sbjct: 1   MKAKSMLRQSVDLL----CSRSTATSEAYTQLVLECVRTNEINQAKRLQSH-MEHHLFQP 55

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG------------ 161
            + ++  +L+  YAK   L  A  LF ++  ++ FSW A++    + G            
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRM 115

Query: 162 -------------------LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
                                +++L  F  MQ +G  P  + + ++L A   L  + +G+
Sbjct: 116 PFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGK 175

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            +HG ++   F G VF+ ++L DMY KCG++E+AR +FD +  +N+V+WN MI GY +NG
Sbjct: 176 QIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG 235

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             E+ I + ++M L G  P +V++++I++A      +DE ++  +       E D V  +
Sbjct: 236 QPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFS----EFKEKDIVCWT 291

Query: 323 SIINFYSKVGLLEDAEVVFSRM----VERDIVTWNLLIAS-----YVQSGQS-------- 365
           +++  Y+K G  EDA ++F+ M    +E D  T + +++S      +  GQ+        
Sbjct: 292 AMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILA 351

Query: 366 ----DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
               +++V+S+++DMY+KC  ID+A+ VFN +  R+VV WN ++   A  G   +A  LF
Sbjct: 352 GLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELF 411

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQ 480
             M  +   P+ +++  ++   L    + + ++ F  + +  G+ P L  +  +++ L +
Sbjct: 412 ENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGR 471

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
                +A+   + M      P     +  LS C+    + N      +L   D  +  P 
Sbjct: 472 TGRIEQAVALIKNMAH---DPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPY 528

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           +  L +MYA  G       V ++  SK +  +
Sbjct: 529 IM-LSNMYASMGRWKDVASVRNLMKSKNVKKF 559


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 213/666 (31%), Positives = 337/666 (50%), Gaps = 94/666 (14%)

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
           WV   ++ H  ++        FVA+ L+  Y     LE AR VFD       +  N+M+ 
Sbjct: 47  WV---KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLC 103

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           GY+Q+G   E + +F  M    +E    S T  L A A+    + G +  + AV  GME 
Sbjct: 104 GYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEK 163

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------- 363
           +  +GSS+I+F  K G + +A+ VF  M  +D+V WN +I  YVQ+G             
Sbjct: 164 NRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMH 223

Query: 364 ---------------------------------------QSDVVVASSIVDMYAKCERID 384
                                                   +D++V +S VDMY+K   I+
Sbjct: 224 GSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIE 283

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM--------------QLEGIS 430
           +A+ VF  +  R++V WN +++     G  GE+  LF+++               L+G S
Sbjct: 284 SARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCS 343

Query: 431 --------------------PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
                                N+I   +++  + + G + +A  +F +M+      N+IT
Sbjct: 344 QTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMK----DRNVIT 399

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           WT ++ GL QN    +A+  F +M E GI  ++ T    + +C  + SL+ GR+IHG+L 
Sbjct: 400 WTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLF 459

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI-SPSKELPVYNAMISGYAMHGLAVEAL 589
           R         +T+LVDMYAKCG I+ A+R+F   S SK++ ++N+MI+GY MHG   +A+
Sbjct: 460 RLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAV 519

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
            ++  + ++G+ P+  TF ++L+ACSH+ LV +G+ LF  M  DH ++P  +H+ C+V+L
Sbjct: 520 GIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDL 579

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
           LSR G  +EA  +I  MP  P   ++ +LLS C       L    S+ LL L+  NPG Y
Sbjct: 580 LSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIY 639

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           + LSN YA + RW++V  +R +M+ +GL+K PG S ++ G  +H F A D SHP  EEIY
Sbjct: 640 IMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIY 699

Query: 770 ATLALL 775
             L  L
Sbjct: 700 HFLESL 705



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 159/267 (59%), Gaps = 15/267 (5%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LLQGC     + TG+ +H   +++   F  N  + T +V  Y+KC +L  A+ +F R++ 
Sbjct: 338 LLQGCSQTASLATGKILHGCAIRS---FESNLILSTAIVDLYSKCGSLKQATFVFNRMKD 394

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +NV +W A++    + G +E AL  F +MQE+G++ ++    +++ +C  LG +  GR++
Sbjct: 395 RNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSI 454

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-GMIARNVVAWNSMIVGYVQNGL 263
           HG++ ++GF   +   ++L+DMY KCG +  A ++F  G I+++VV WNSMI GY  +G 
Sbjct: 455 HGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGH 514

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-- 321
             +A+ ++++M  EG++P + +  S+LSA ++   +++G     +++ N ME D+ +   
Sbjct: 515 GYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQG-----ISLFNSMERDHNIRPI 569

Query: 322 ----SSIINFYSKVGLLEDAEVVFSRM 344
               + +++  S+ G  E+A+ +  +M
Sbjct: 570 EKHYACLVDLLSRAGRFEEAQALIEKM 596



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 54  LSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFA 113
           L++     +A+ L  +M+          +  L+  C +   +  G+ IH  + + G  FA
Sbjct: 407 LAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLG--FA 464

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRV-KNVFSWAAIIGLNCRVGLSEKALIGFVE 172
            +    T LV  YAKC  +++A R+F    + K+V  W ++I      G   +A+  + +
Sbjct: 465 FDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHK 524

Query: 173 MQEDGVSPDNFVLPNVLKAC 192
           M E+G+ P+     ++L AC
Sbjct: 525 MIEEGLKPNQTTFLSLLSAC 544


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  357 bits (916), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 199/605 (32%), Positives = 319/605 (52%), Gaps = 54/605 (8%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLID---MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
           R +H  ++K G     +  S L++   +      L  A  VF+ +   N++ WN+M  G+
Sbjct: 19  RIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGH 78

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             +     AI+++  M   G+ P   +   +L + A L    EG+Q H   +  G ELD 
Sbjct: 79  ALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDL 138

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
            + +S+I+ Y K G  +DA  VF     RD+V++  LI  Y   G               
Sbjct: 139 YVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGY-------------- 184

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
               I++A+++F+ I ++DVV WN +++ YAD G + EA  LF +M    + P+  +  +
Sbjct: 185 ----IESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVT 240

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNL------------------------------ 468
           V+    ++G +   + +   +   G+  NL                              
Sbjct: 241 VVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKD 300

Query: 469 -ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
            I+W T+I G T  +   EA+L FQEML +G  P+  T+   L AC  + ++  GR IH 
Sbjct: 301 VISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHV 360

Query: 528 YLIRH--DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           Y+ +    +   + + TSL+DMYAKCG+I  A +VF+    + L   NAMI G+AMHG A
Sbjct: 361 YIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRA 420

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
             A  +F  +++ GI+PD ITF  +L+ACSH+G+++ G  +F  M  ++++ P +EH+GC
Sbjct: 421 NAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGC 480

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           +++LL   G   EA  +I TM  +PD  I  SLL  C      EL E  ++ L+++EP+N
Sbjct: 481 MIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPEN 540

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
           PG+YV LSN YA +GRWNEV+ +R ++ +KG++K PGCS I+I   +H F+  D+ HP+ 
Sbjct: 541 PGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 600

Query: 766 EEIYA 770
            EIY 
Sbjct: 601 REIYG 605



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 123/413 (29%), Positives = 209/413 (50%), Gaps = 35/413 (8%)

Query: 78  GPEIYGELLQGCVYKRDMYTGQQIHARILKNGDF----------FARNEYVETKLVVFYA 127
           G +I+G +L+   Y+ D+Y    + +  +KNG +            R+    T L+  YA
Sbjct: 122 GQQIHGHVLK-LGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYA 180

Query: 128 KCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPN 187
               ++ A ++F  + VK+V SW AII      G +++AL  F EM +  V PD   +  
Sbjct: 181 SRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVT 240

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           V+ AC   G +  GR VH ++   G    + + ++LID+Y KCG++E A  +F G+  ++
Sbjct: 241 VVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKD 300

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           V++WN+MI GY    L +EA+ +F EM   G  P  V++ SIL A A L A+D G+  H 
Sbjct: 301 VISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHV 360

Query: 308 V--AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
                I G+   + L +S+I+ Y+K G +E A  VF+ M  R +   N +I  +   G+ 
Sbjct: 361 YIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGR- 419

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM- 424
               A++  D++++  +        N I   D+     LL+A +  G      R+F  M 
Sbjct: 420 ----ANAAFDIFSRMRK--------NGIEPDDITFVG-LLSACSHSGMLDLGRRIFRSMT 466

Query: 425 QLEGISPNIISWNSVI--LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           Q   I+P +  +  +I  LG L  G   EA++M   + ++ ++P+ + W +L+
Sbjct: 467 QNYKITPKLEHYGCMIDLLGHL--GLFKEAEEM---INTMTMEPDGVIWCSLL 514



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 142/566 (25%), Positives = 256/566 (45%), Gaps = 100/566 (17%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVF---YAKCDALDVASRLFCR 141
           LL  C   + + + + IHA+++K G       Y  ++L+ F       D L  A  +F  
Sbjct: 8   LLHNC---KTLQSLRIIHAQMIKTG--LHNTNYALSRLLEFCILSPNFDGLPYAISVFET 62

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           ++  N+  W  +   +        A+  +V M   G+ P+++  P +LK+C  L     G
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEG 122

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG------------------- 242
           + +HG+VLK+G++  ++V +SLI MY K G  ++A KVFDG                   
Sbjct: 123 QQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASR 182

Query: 243 ------------MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
                       +  ++VV+WN++I GY   G N+EA+ +F EM    V+P   ++ +++
Sbjct: 183 GYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVV 242

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA A   ++  G+Q H+    +G+  +  + +++I+ YSK G +E A  +F  +  +D++
Sbjct: 243 SACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVI 302

Query: 351 TWNLLIASY----------------VQSGQ--SDVVVAS--------------------- 371
           +WN +I  Y                ++SG+  +DV + S                     
Sbjct: 303 SWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYI 362

Query: 372 ---------------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
                          S++DMYAKC  I+ A QVFNS+  R +   N ++  +A  GR+  
Sbjct: 363 DKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANA 422

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLI 475
           A  +F +M+  GI P+ I++  ++     +G ++  + +F  M Q+  + P L  +  +I
Sbjct: 423 AFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMI 482

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA-LSACTDVASLRNGRAIHGYLIRHDL 534
             L       EA    +EM+ T        I C+ L AC    ++  G +    LI+ + 
Sbjct: 483 DLLGHLGLFKEA----EEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEP 538

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRV 560
             P   V  L ++YA  G  ++   +
Sbjct: 539 ENPGSYVL-LSNIYATAGRWNEVANI 563



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 176/371 (47%), Gaps = 12/371 (3%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  +     +EA+DL  EM   N +        ++  C     +  G+Q+H+ I  +G 
Sbjct: 207 ISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHG- 265

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               N  +   L+  Y+KC  ++ A  LF  L  K+V SW  +IG    + L ++AL+ F
Sbjct: 266 -LGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLF 324

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSLIDMYG 228
            EM   G +P++  + ++L AC  LG + FGR +H Y+ K   G      + +SLIDMY 
Sbjct: 325 QEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYA 384

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCGD+E A +VF+ M  R + A N+MI G+  +G    A  +F  M   G+EP  ++   
Sbjct: 385 KCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVG 444

Query: 289 ILSASANLDALDEGKQAHAVAVIN---GMELDNVLGSSIINFYSKVGLLEDAEVVFSRM- 344
           +LSA ++   LD G++       N     +L++     +I+    +GL ++AE + + M 
Sbjct: 445 LLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHY--GCMIDLLGHLGLFKEAEEMINTMT 502

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
           +E D V W  L+ +    G  +V +  S      K E  +    V  S I      WN +
Sbjct: 503 MEPDGVIWCSLLKACKMHG--NVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEV 560

Query: 405 LAAYADLGRSG 415
               A L   G
Sbjct: 561 ANIRALLNDKG 571


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/609 (33%), Positives = 325/609 (53%), Gaps = 62/609 (10%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLID---MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
           R +H  ++K G     +  S LI+   +      L  A  VF+ +   N++ WN+M  G+
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             +     A+ ++  M   G+ P   +   +L + A   A  EG+Q H   +  G +LD 
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 123

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
            + +S+I+ Y + G LEDA  VF +   RD+V++  LI  Y   G               
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGY-------------- 169

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------ 432
               I +A+++F+ I ++DVV WN +++ YA+ G + EA  LF +M    + P+      
Sbjct: 170 ----IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVS 225

Query: 433 ----------------IISW-------------NSVILGFLRNGQMNEAKDMFLQMQSLG 463
                           + SW             N++I  +++ G++  A  +F  +    
Sbjct: 226 VVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLS--- 282

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
              ++I+W TLI G T  +   EA+L FQEML +G  P+  T+   L AC  + ++  GR
Sbjct: 283 -YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGR 341

Query: 524 AIHGYLIRH--DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
            IH Y+ +    +   +   TSL+DMYAKCG+I  A++VFD   ++ L  +NAMI G+AM
Sbjct: 342 WIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAM 401

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HG A  A  +F  +++  I+PD ITF  +L+ACSH+G+++ G  +F  M  D+++ P +E
Sbjct: 402 HGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLE 461

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+GC+++LL   G   EA  +I TM  +PD  I  SLL  C      EL E  +++L+++
Sbjct: 462 HYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKI 521

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           EP NPG+YV LSN YA +GRWNEV+++R ++ +KG++K PGCS I+I   +H F+  D+ 
Sbjct: 522 EPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKF 581

Query: 762 HPKTEEIYA 770
           HP+  EIY 
Sbjct: 582 HPRNREIYG 590



 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 147/552 (26%), Positives = 253/552 (45%), Gaps = 97/552 (17%)

Query: 99  QQIHARILKNGDFFARNEYVETKLV---VFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
           + IHA+++K G       Y  +KL+   V     D L  A  +F  ++  N+  W  +  
Sbjct: 4   RMIHAQMIKTG--LHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
            +        AL  +V M   G+ P+ +  P +LK+C        G+ +HG+VLK+G+D 
Sbjct: 62  GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFD--------------------GMIA---------- 245
            ++V +SLI MY + G LE+ARKVFD                    G IA          
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIP 181

Query: 246 -RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            ++VV+WN+MI GY + G N+EA+ +F EM    V P   ++ S++SA A   +++ G+Q
Sbjct: 182 IKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ 241

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY----- 359
            H+    +G   +  + +++I+ Y K G +E A  +F  +  +D+++WN LI  Y     
Sbjct: 242 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNL 301

Query: 360 -----------VQSGQS--DVVVAS----------------------------------- 371
                      ++SG+S  DV + S                                   
Sbjct: 302 YKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHR 361

Query: 372 -SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
            S++DMYAKC  I+ A+QVF+SI+ R +  WN ++  +A  GR+  A  +F +M+   I 
Sbjct: 362 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 421

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
           P+ I++  ++     +G ++  + +F  M +   + P L  +  +I  L  +    EA  
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEA-- 479

Query: 490 FFQEMLETGIKPSTTTITCA-LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
             +EM+ T        I C+ L AC    ++  G +    LI+ +   P   V  L ++Y
Sbjct: 480 --EEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVL-LSNIY 536

Query: 549 AKCGNIHQAKRV 560
           A  G  ++  ++
Sbjct: 537 ATAGRWNEVAKI 548



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 216/420 (51%), Gaps = 31/420 (7%)

Query: 71  KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDF------FARNEYVE----T 120
           K + F+ G +I+G +L+   Y  D+Y    + +  ++NG        F ++ + +    T
Sbjct: 100 KSKAFREGQQIHGHVLK-LGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYT 158

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            L+  YA    +  A ++F  + +K+V SW A+I      G +++AL  F EM +  V P
Sbjct: 159 ALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRP 218

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D   + +V+ AC     +  GR VH ++   GF   + + ++LID+Y KCG++E A  +F
Sbjct: 219 DESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF 278

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           +G+  ++V++WN++I GY    L +EA+ +F EM   G  P  V++ SIL A A+L A++
Sbjct: 279 EGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIE 338

Query: 301 EGKQAHAV--AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
            G+  H      + G+   +   +S+I+ Y+K G +E A+ VF  ++ R + +WN +I  
Sbjct: 339 IGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFG 398

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
           +   G+     A++  D++++  + +         I  D + +  LL+A +  G      
Sbjct: 399 FAMHGR-----ANAAFDIFSRMRKNE---------IEPDDITFVGLLSACSHSGMLDLGR 444

Query: 419 RLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            +F  M+ +  I+P +  +  +I     +G   EA++M   M+   ++P+ + W +L+  
Sbjct: 445 HIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTME---MEPDGVIWCSLLKA 501



 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 178/379 (46%), Gaps = 18/379 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++    +EA++L  EM   N +        ++  C     +  G+Q+H+ I
Sbjct: 187 SWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWI 246

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             +G  F  N  +   L+  Y KC  ++ A  LF  L  K+V SW  +IG    + L ++
Sbjct: 247 DDHG--FGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKE 304

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSL 223
           AL+ F EM   G SP++  + ++L AC  LG +  GR +H Y+ K   G        +SL
Sbjct: 305 ALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSL 364

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           IDMY KCGD+E A++VFD ++ R++ +WN+MI G+  +G    A  +F  M    +EP  
Sbjct: 365 IDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDD 424

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDA 337
           ++   +LSA ++   LD G+      +   M+ D  +   +      I+     GL ++A
Sbjct: 425 ITFVGLLSACSHSGMLDLGRH-----IFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEA 479

Query: 338 EVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           E + + M +E D V W  L+ +    G  +V +  S      K E  +    V  S I  
Sbjct: 480 EEMINTMEMEPDGVIWCSLLKACKMHG--NVELGESYAQNLIKIEPKNPGSYVLLSNIYA 537

Query: 397 DVVLWNTLLAAYADLGRSG 415
               WN +    A L   G
Sbjct: 538 TAGRWNEVAKIRALLNDKG 556


>gi|147791119|emb|CAN74703.1| hypothetical protein VITISV_029224 [Vitis vinifera]
          Length = 677

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 208/613 (33%), Positives = 345/613 (56%), Gaps = 33/613 (5%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G   +AL  + ++    V    F  P +LKA   L     G+ +H  ++K GF   ++ A
Sbjct: 72  GFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAA 131

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L DMY K   L  A KVF+ M  RN+ + N  I G+ +NG   EA+  F ++ L    
Sbjct: 132 TALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFR 191

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P  V++ S+L A A+++ LD   Q H +A+  G+E D  + ++++  YS  G L  A+ V
Sbjct: 192 PNSVTIASVLPACASVE-LD--GQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKV 248

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVV---------------ASSIVDMYAKCER--- 382
           F +++++++V++N  I+  +Q+G   +V                + ++V + + C +   
Sbjct: 249 FDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLY 308

Query: 383 IDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
           I   +Q+   +    I  D ++   L+  Y+  G    A  +F  ++L G S N+++WNS
Sbjct: 309 IRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIF--IELSG-SRNLVTWNS 365

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I G + NGQ + A ++F Q++  G++P+  TW T+ISG +Q     EA  FF +M   G
Sbjct: 366 MIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAG 425

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           +  S  +IT  L AC+ +++L++G+ IHG+ IR ++     I T+L+DMY KCG+ + A+
Sbjct: 426 VIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLAR 485

Query: 559 RV---FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           RV   F I P  +   +NAMISGY  +G    A  +F  +Q++ + P+S T  +IL+ CS
Sbjct: 486 RVFCQFQIKPD-DPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCS 544

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           H G ++ G +LF  M  D+ + P+ EHFGC+V+LL R G L EA  +I  MP +    + 
Sbjct: 545 HTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMP-EASVSVF 603

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
            SLL  C   +++ L E +++ L +LEP +P  +V LSN YA  GRW +V +VR++M ++
Sbjct: 604 ASLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERVREMMNDR 663

Query: 736 GLRKNPGCSWIQI 748
           GL+K PGCS I +
Sbjct: 664 GLKKPPGCSSIGV 676



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 167/384 (43%), Gaps = 56/384 (14%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR- 143
           +L  C     +  G+QIH  ++K    F  +  V T LV  Y+KC     A  +F  L  
Sbjct: 299 ILSACSKLLYIRFGRQIHGLVVKIEINF--DTMVGTALVDMYSKCGCWHWAYGIFIELSG 356

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV------------------- 184
            +N+ +W ++I      G S+ A+  F +++ +G+ PD+                     
Sbjct: 357 SRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFK 416

Query: 185 ----------------LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
                           + ++L+AC AL  +  G+ +HG+ ++   D   F++++LIDMY 
Sbjct: 417 FFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYM 476

Query: 229 KCGDLEEARKVFDGMIAR--NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           KCG    AR+VF     +  +   WN+MI GY +NG  + A  +F +M  E V+P   ++
Sbjct: 477 KCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATL 536

Query: 287 TSILSASANLDALDEGKQAHAVAVIN-GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
            SILS  ++   +D G Q   +   + G+   +     +++   + G L++A+ +   M 
Sbjct: 537 VSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMP 596

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           E  +  +  L+ +      SD  +   +    ++ E  D    V    IL ++       
Sbjct: 597 EASVSVFASLLGACRH--HSDSALGEEMAKKLSELEPQDPTPFV----ILSNI------- 643

Query: 406 AAYADLGRSGEASRLFYQMQLEGI 429
             YA  GR G+  R+   M   G+
Sbjct: 644 --YAVQGRWGDVERVREMMNDRGL 665



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 115/254 (45%), Gaps = 22/254 (8%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  S++ Q+ EA     +M+        +    LL+ C     + +G++IH   ++   
Sbjct: 402 ISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTN- 460

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK--NVFSWAAIIGLNCRVGLSEKALI 168
               +E++ T L+  Y KC    +A R+FC+ ++K  +   W A+I    R G  + A  
Sbjct: 461 -IDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFE 519

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGAL-----GWVGFGRAVHGYVLKVGFD--GCVFVAS 221
            F +MQE+ V P++  L ++L  C        GW  F      Y L    +  GC     
Sbjct: 520 IFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGC----- 574

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG---YVQNGLNEEAIRVFYEMTLEG 278
            ++D+ G+ G L+EA+++   M   +V  + S++     +  + L EE  +   E  LE 
Sbjct: 575 -MVDLLGRSGRLKEAQELIHEMPEASVSVFASLLGACRHHSDSALGEEMAKKLSE--LEP 631

Query: 279 VEPTRVSVTSILSA 292
            +PT   + S + A
Sbjct: 632 QDPTPFVILSNIYA 645



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 8/191 (4%)

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           I+ L  N    EA+  + ++  + +     T    L A   + S   G+ +H  LI+   
Sbjct: 65  IAKLVSNGFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGF 124

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
            L     T+L DMY K   +  A +VF+  P + LP  N  ISG++ +G   EAL  FK 
Sbjct: 125 HLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQ 184

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNE--GLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           +      P+S+T  ++L AC+   L  +   L + +G+ SD  V  +      VV + S 
Sbjct: 185 VGLGNFRPNSVTIASVLPACASVELDGQVHCLAIKLGVESDIYVATA------VVTMYSN 238

Query: 653 CGNLDEALRVI 663
           CG L  A +V 
Sbjct: 239 CGELVLAKKVF 249


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  356 bits (914), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 223/694 (32%), Positives = 374/694 (53%), Gaps = 57/694 (8%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASR----LFCRLRVKNVFSWAAII 154
           +Q+HA+I+ N      N +V     +    C  L         LF      NVF + +++
Sbjct: 18  RQLHAQIIHN-SLHHHNYWV----ALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSML 72

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD 214
                +    K ++ F  MQ  GV PD FV P ++K+ G  G +GF    H +VLK+G  
Sbjct: 73  RFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGG-IGF----HAHVLKLGHG 127

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGM--IARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
              FV +++IDMY + G +  ARKVFD +    R V  WN+M+ GY +     +A  +F 
Sbjct: 128 SDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFD 187

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKV 331
            M     E   ++ T++++  A +  L+  ++       + M   +V+  +++++ Y++ 
Sbjct: 188 VMP----ERNVITWTAMVTGYAKVKDLEAARR-----YFDCMPERSVVSWNAMLSGYAQN 238

Query: 332 GLLEDAEVVFSRMV----ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAK 387
           GL E+   +F  MV    E D  TW  +I++   S + D  +A+S+V       R  + K
Sbjct: 239 GLAEEVLRLFDEMVNAGIEPDETTWVTVISAC--SSRGDPCLAASLV-------RTLHQK 289

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
           Q+  +  +R       LL  YA  G  G A R+F ++   G   N ++WN++I  + R G
Sbjct: 290 QIQLNCFVR-----TALLDMYAKCGSIGAARRIFDEL---GAYRNSVTWNAMISAYTRVG 341

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTI 506
            ++ A+++F  M       N++TW ++I+G  QN     AI  F+EM+    + P   T+
Sbjct: 342 NLDSARELFNTMPG----RNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTM 397

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
              +SAC  + +L  G  +  +L  + + L      +++ MY++CG++  AKRVF    +
Sbjct: 398 VSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMAT 457

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           +++  YN +ISG+A HG  VEA+ L   +++ GI+PD +TF  +L ACSHAGL+ EG ++
Sbjct: 458 RDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKV 517

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  +       P+++H+ C+V+LL R G L++A R +  MP +P A + GSLL+      
Sbjct: 518 FESI-----KDPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHK 572

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
           + EL E  +  L +LEPDN GN++ LSN YA++GRW +V ++R+ MK+ G++K  G SW+
Sbjct: 573 QVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWV 632

Query: 747 QIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           + G +LH F+  DRSH ++++IY  L  L   +R
Sbjct: 633 EYGGKLHKFIVADRSHERSDDIYQLLIELRKKMR 666


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 202/609 (33%), Positives = 325/609 (53%), Gaps = 62/609 (10%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLID---MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
           R +H  ++K G     +  S LI+   +      L  A  VF+ +   N++ WN+M  G+
Sbjct: 19  RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 78

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             +     A+ ++  M   G+ P   +   +L + A   A  EG+Q H   +  G +LD 
Sbjct: 79  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 138

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
            + +S+I+ Y + G LEDA  VF +   RD+V++  LI  Y   G               
Sbjct: 139 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGY-------------- 184

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------ 432
               I +A+++F+ I ++DVV WN +++ YA+ G + EA  LF +M    + P+      
Sbjct: 185 ----IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVS 240

Query: 433 ----------------IISW-------------NSVILGFLRNGQMNEAKDMFLQMQSLG 463
                           + SW             N++I  +++ G++  A  +F  +    
Sbjct: 241 VVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLS--- 297

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
              ++I+W TLI G T  +   EA+L FQEML +G  P+  T+   L AC  + ++  GR
Sbjct: 298 -YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGR 356

Query: 524 AIHGYLIRH--DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
            IH Y+ +    +   +   TSL+DMYAKCG+I  A++VFD   ++ L  +NAMI G+AM
Sbjct: 357 WIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAM 416

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HG A  A  +F  +++  I+PD ITF  +L+ACSH+G+++ G  +F  M  D+++ P +E
Sbjct: 417 HGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLE 476

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+GC+++LL   G   EA  +I TM  +PD  I  SLL  C      EL E  +++L+++
Sbjct: 477 HYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKI 536

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           EP NPG+YV LSN YA +GRWNEV+++R ++ +KG++K PGCS I+I   +H F+  D+ 
Sbjct: 537 EPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKF 596

Query: 762 HPKTEEIYA 770
           HP+  EIY 
Sbjct: 597 HPRNREIYG 605



 Score =  182 bits (462), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 151/566 (26%), Positives = 260/566 (45%), Gaps = 100/566 (17%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV---VFYAKCDALDVASRLFCR 141
           LL  C   + + + + IHA+++K G       Y  +KL+   V     D L  A  +F  
Sbjct: 8   LLHNC---KTLQSLRMIHAQMIKTG--LHNTNYALSKLIEFCVLSPHFDGLPYAISVFET 62

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           ++  N+  W  +   +        AL  +V M   G+ P+ +  P +LK+C        G
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREG 122

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-------------------- 241
           + +HG+VLK+G+D  ++V +SLI MY + G LE+ARKVFD                    
Sbjct: 123 QQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASK 182

Query: 242 GMIA-----------RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G IA           ++VV+WN+MI GY + G N+EA+ +F EM    V P   ++ S++
Sbjct: 183 GYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVV 242

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA A   +++ G+Q H+    +G   +  + +++I+ Y K G +E A  +F  +  +D++
Sbjct: 243 SACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVI 302

Query: 351 TWNLLIASY----------------VQSGQS--DVVVAS--------------------- 371
           +WN LI  Y                ++SG+S  DV + S                     
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYI 362

Query: 372 ---------------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
                          S++DMYAKC  I+ A+QVF+SI+ R +  WN ++  +A  GR+  
Sbjct: 363 NKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANA 422

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLI 475
           A  +F +M+   I P+ I++  ++     +G ++  + +F  M +   + P L  +  +I
Sbjct: 423 AFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMI 482

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA-LSACTDVASLRNGRAIHGYLIRHDL 534
             L  +    EA    +EM+ T        I C+ L AC   A++  G +    LI+ + 
Sbjct: 483 DLLGHSGLFKEA----EEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEP 538

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRV 560
             P   V  L ++YA  G  ++  ++
Sbjct: 539 KNPGSYVL-LSNIYATAGRWNEVAKI 563



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 216/420 (51%), Gaps = 31/420 (7%)

Query: 71  KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDF------FARNEYVE----T 120
           K + F+ G +I+G +L+   Y  D+Y    + +  ++NG        F ++ + +    T
Sbjct: 115 KSKAFREGQQIHGHVLK-LGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYT 173

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            L+  YA    +  A ++F  + +K+V SW A+I      G +++AL  F EM +  V P
Sbjct: 174 ALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRP 233

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D   + +V+ AC     +  GR VH ++   GF   + + ++LID+Y KCG++E A  +F
Sbjct: 234 DESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF 293

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           +G+  ++V++WN++I GY    L +EA+ +F EM   G  P  V++ SIL A A+L A++
Sbjct: 294 EGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIE 353

Query: 301 EGKQAHAV--AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
            G+  H      + G+   +   +S+I+ Y+K G +E A+ VF  ++ R + +WN +I  
Sbjct: 354 IGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFG 413

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
           +   G+     A++  D++++  + +         I  D + +  LL+A +  G      
Sbjct: 414 FAMHGR-----ANAAFDIFSRMRKNE---------IEPDDITFVGLLSACSHSGMLDLGR 459

Query: 419 RLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            +F  M+ +  I+P +  +  +I     +G   EA++M   M+   ++P+ + W +L+  
Sbjct: 460 HIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTME---MEPDGVIWCSLLKA 516



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 181/384 (47%), Gaps = 31/384 (8%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++    +EA++L  EM   N +        ++  C     +  G+Q+H+ I
Sbjct: 202 SWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWI 261

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             +G  F  N  +   L+  Y KC  ++ A  LF  L  K+V SW  +IG    + L ++
Sbjct: 262 DDHG--FGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKE 319

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSL 223
           AL+ F EM   G SP++  + ++L AC  LG +  GR +H Y+ K   G        +SL
Sbjct: 320 ALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSL 379

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           IDMY KCGD+E A++VFD ++ R++ +WN+MI G+  +G    A  +F  M    +EP  
Sbjct: 380 IDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDD 439

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDA 337
           ++   +LSA ++   LD G+      +   M+ D  +   +      I+     GL ++A
Sbjct: 440 ITFVGLLSACSHSGMLDLGRH-----IFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEA 494

Query: 338 EVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           E + + M +E D V W  L+ +                 MYA  E  ++  Q    I  +
Sbjct: 495 EEMINTMEMEPDGVIWCSLLKA---------------CKMYANVELGESYAQNLIKIEPK 539

Query: 397 DVVLWNTLLAAYADLGRSGEASRL 420
           +   +  L   YA  GR  E +++
Sbjct: 540 NPGSYVLLSNIYATAGRWNEVAKI 563


>gi|225424928|ref|XP_002270695.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750
           [Vitis vinifera]
 gi|296086418|emb|CBI32007.3| unnamed protein product [Vitis vinifera]
          Length = 617

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 208/613 (33%), Positives = 345/613 (56%), Gaps = 33/613 (5%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G   +AL  + ++    V    F  P +LKA   L     G+ +H  ++K GF   ++ A
Sbjct: 12  GFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAA 71

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L DMY K   L  A KVF+ M  RN+ + N  I G+ +NG   EA+  F ++ L    
Sbjct: 72  TALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFR 131

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P  V++ S+L A A+++ LD   Q H +A+  G+E D  + ++++  YS  G L  A+ V
Sbjct: 132 PNSVTIASVLPACASVE-LD--GQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKV 188

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVV---------------ASSIVDMYAKCER--- 382
           F +++++++V++N  I+  +Q+G   +V                + ++V + + C +   
Sbjct: 189 FDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLY 248

Query: 383 IDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
           I   +Q+   +    I  D ++   L+  Y+  G    A  +F  ++L G S N+++WNS
Sbjct: 249 IRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIF--IELSG-SRNLVTWNS 305

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I G + NGQ + A ++F Q++  G++P+  TW T+ISG +Q     EA  FF +M   G
Sbjct: 306 MIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAG 365

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           +  S  +IT  L AC+ +++L++G+ IHG+ IR ++     I T+L+DMY KCG+ + A+
Sbjct: 366 VIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLAR 425

Query: 559 RV---FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           RV   F I P  +   +NAMISGY  +G    A  +F  +Q++ + P+S T  +IL+ CS
Sbjct: 426 RVFCQFQIKPD-DPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCS 484

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           H G ++ G +LF  M  D+ + P+ EHFGC+V+LL R G L EA  +I  MP +    + 
Sbjct: 485 HTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMP-EASVSVF 543

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
            SLL  C   +++ L E +++ L +LEP +P  +V LSN YA  GRW +V +VR++M ++
Sbjct: 544 ASLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERVREMMNDR 603

Query: 736 GLRKNPGCSWIQI 748
           GL+K PGCS I +
Sbjct: 604 GLKKPPGCSSIGV 616



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 167/384 (43%), Gaps = 56/384 (14%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR- 143
           +L  C     +  G+QIH  ++K    F  +  V T LV  Y+KC     A  +F  L  
Sbjct: 239 ILSACSKLLYIRFGRQIHGLVVKIEINF--DTMVGTALVDMYSKCGCWHWAYGIFIELSG 296

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV------------------- 184
            +N+ +W ++I      G S+ A+  F +++ +G+ PD+                     
Sbjct: 297 SRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFK 356

Query: 185 ----------------LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
                           + ++L+AC AL  +  G+ +HG+ ++   D   F++++LIDMY 
Sbjct: 357 FFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYM 416

Query: 229 KCGDLEEARKVFDGMIAR--NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           KCG    AR+VF     +  +   WN+MI GY +NG  + A  +F +M  E V+P   ++
Sbjct: 417 KCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATL 476

Query: 287 TSILSASANLDALDEGKQAHAVAVIN-GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
            SILS  ++   +D G Q   +   + G+   +     +++   + G L++A+ +   M 
Sbjct: 477 VSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMP 536

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           E  +  +  L+ +      SD  +   +    ++ E  D    V    IL ++       
Sbjct: 537 EASVSVFASLLGACRH--HSDSALGEEMAKKLSELEPQDPTPFV----ILSNI------- 583

Query: 406 AAYADLGRSGEASRLFYQMQLEGI 429
             YA  GR G+  R+   M   G+
Sbjct: 584 --YAVQGRWGDVERVREMMNDRGL 605



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 115/254 (45%), Gaps = 22/254 (8%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  S++ Q+ EA     +M+        +    LL+ C     + +G++IH   ++   
Sbjct: 342 ISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTN- 400

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK--NVFSWAAIIGLNCRVGLSEKALI 168
               +E++ T L+  Y KC    +A R+FC+ ++K  +   W A+I    R G  + A  
Sbjct: 401 -IDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFE 459

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGAL-----GWVGFGRAVHGYVLKVGFD--GCVFVAS 221
            F +MQE+ V P++  L ++L  C        GW  F      Y L    +  GC     
Sbjct: 460 IFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGC----- 514

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG---YVQNGLNEEAIRVFYEMTLEG 278
            ++D+ G+ G L+EA+++   M   +V  + S++     +  + L EE  +   E  LE 
Sbjct: 515 -MVDLLGRSGRLKEAQELIHEMPEASVSVFASLLGACRHHSDSALGEEMAKKLSE--LEP 571

Query: 279 VEPTRVSVTSILSA 292
            +PT   + S + A
Sbjct: 572 QDPTPFVILSNIYA 585



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 8/191 (4%)

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           I+ L  N    EA+  + ++  + +     T    L A   + S   G+ +H  LI+   
Sbjct: 5   IAKLVSNGFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGF 64

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
            L     T+L DMY K   +  A +VF+  P + LP  N  ISG++ +G   EAL  FK 
Sbjct: 65  HLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQ 124

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNE--GLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           +      P+S+T  ++L AC+   L  +   L + +G+ SD  V  +      VV + S 
Sbjct: 125 VGLGNFRPNSVTIASVLPACASVELDGQVHCLAIKLGVESDIYVATA------VVTMYSN 178

Query: 653 CGNLDEALRVI 663
           CG L  A +V 
Sbjct: 179 CGELVLAKKVF 189


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 209/698 (29%), Positives = 351/698 (50%), Gaps = 102/698 (14%)

Query: 178 VSPDNFVLPNV--------LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           +S  N++  NV        L+ C +L  +   R +   V K G     F  + L+ ++ +
Sbjct: 25  LSERNYIPANVYEHPAALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCR 81

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
            G ++EA +VF+ + ++  V +++M+ G+ +    ++A++ F  M  + VEP   + T +
Sbjct: 82  YGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYL 141

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           L    +   L  GK+ H + V +G  LD    + + N Y+K   + +A  VF RM ERD+
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDL 201

Query: 350 VTWNLLIASYVQSG---------------------------------------------- 363
           V+WN ++A Y Q+G                                              
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGY 261

Query: 364 ------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                  S V +++++VDMYAKC  ++ A+Q+F+ ++ R+VV WN+++ AY       EA
Sbjct: 262 AMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEA 321

Query: 418 SRLFYQMQLEGISP-----------------------------------NIISWNSVILG 442
             +F +M  EG+ P                                   N+   NS+I  
Sbjct: 322 MLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISM 381

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
           + +  +++ A  MF ++QS      L++W  +I G  QN    +A+ +F +M    +KP 
Sbjct: 382 YCKCKEVDTAASMFGKLQS----RTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPD 437

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
           T T    ++A  +++   + + IHG ++R  L     + T+LVDMYAKCG I  A+ +FD
Sbjct: 438 TFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFD 497

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
           +   + +  +NAMI GY  HG    AL LF+ +Q+  I P+ +TF ++++ACSH+GLV  
Sbjct: 498 MMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEA 557

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           GL+ F  M  ++ ++ SM+H+G +V+LL R G L+EA   I+ MP  P  ++ G++L  C
Sbjct: 558 GLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC 617

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
                   AE  +E L +L PD+ G +V L+N Y A+  W +V QVR  M  +GLRK PG
Sbjct: 618 QIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPG 677

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           CS ++I  E+H F +   +HP +++IYA L  L  H++
Sbjct: 678 CSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIK 715


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 221/787 (28%), Positives = 379/787 (48%), Gaps = 102/787 (12%)

Query: 86   LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
            L  C   RD   G  +H+ + +    F  +      L+  Y KC   + A  +F  +  +
Sbjct: 240  LGACTSLRD---GTWLHSLLHEASLGF--DPLASNALINMYGKCGDWEGAYSVFKAMASR 294

Query: 146  ---NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG- 201
               ++ SW A+I  +   G    A+  F  ++ +G+ P++  L  +L A  A G V FG 
Sbjct: 295  QELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASG-VDFGA 353

Query: 202  -RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYV 259
             R  HG + + G+   V + +++I MY KCG    A  VF  +  + +V++WN+M+    
Sbjct: 354  ARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASE 413

Query: 260  QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME-LDN 318
                  + +  F+ M L G++P +VS  +IL+A +N +ALD G++ H++ +    + +++
Sbjct: 414  DRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVES 473

Query: 319  VLGSSIINFYSKVGLLEDAEVVFSRMV--ERDIVTWNLLIASYVQ--------------- 361
             + + +++ Y K G + +AE+VF  M    R +VTWN+++ +Y Q               
Sbjct: 474  SVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEML 533

Query: 362  ---------------------------------SGQSDVVVASSIVDMYAKCERIDNAKQ 388
                                             SG     + ++++ M+ +C  ++ A+ 
Sbjct: 534  QGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARS 593

Query: 389  VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN---------------- 432
            VFN +   DVV W  +++A A+     E   LF +MQLEG+ P+                
Sbjct: 594  VFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTT 653

Query: 433  -------------------IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
                               I   N+++  +   G   EA   F  M++     +L++W  
Sbjct: 654  LGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKA----RDLVSWNI 709

Query: 474  LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
            + +   Q     EA+L F++M   G+KP   T +  L+     A + +G+  H       
Sbjct: 710  MSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESG 769

Query: 534  LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
            L     + T LV +YAKCG + +A  +F  +    + + NA+I   A HG + EA+ +F 
Sbjct: 770  LDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFW 829

Query: 594  NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
             +QQ+G+ PD  T  +I++AC HAG+V EG   F+ M     + P++EH+ C V+LL R 
Sbjct: 830  KMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRA 889

Query: 654  GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
            G L+ A ++I  MP + +  +  SLL TC    + EL E  ++ +L+L+P N   +V LS
Sbjct: 890  GQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLS 949

Query: 714  NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
            N Y A+G+W +    R  M ++ ++  PG SW +IG+++H FVA DRSHPKT+EIY  L 
Sbjct: 950  NIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLD 1009

Query: 774  LLGMHVR 780
             L + +R
Sbjct: 1010 KLELLMR 1016



 Score =  235 bits (600), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 192/728 (26%), Positives = 314/728 (43%), Gaps = 140/728 (19%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S   Q+ SLS   ++  A DL             + Y  LLQ CV   D+  G+  H  I
Sbjct: 5   SIIRQLCSLSGAVRVDRAADL-------------QEYTALLQSCVDSNDLAKGKHAHELI 51

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
              G    ++ ++   L+  Y +C +L+ A  +F ++  +NV SW A+I  N + G   +
Sbjct: 52  ANAG--LEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFAR 109

Query: 166 ALIGFVEM-QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD----GCVFVA 220
           A   F  M  E   +P+++ L  +L AC     +  GR++H  + ++G +        V 
Sbjct: 110 AFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVG 169

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ-NGLNEEAIRVFYEMTLEGV 279
           +++I+MY KCG LE+A  VF  +  ++VV+W +M   Y Q      +A+R+F EM L+ +
Sbjct: 170 NAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPL 229

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P  ++  + L A  +   L +G   H++     +  D +  +++IN Y K G  E A  
Sbjct: 230 APNVITFITALGACTS---LRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYS 286

Query: 340 VFSRMVER---DIVTWNLLIASYVQSGQ-------------------------------- 364
           VF  M  R   D+V+WN +I++ V++G+                                
Sbjct: 287 VFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAA 346

Query: 365 ---------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILR-DVVLWN 402
                                 DVV+ ++I+ MYAKC     A  VF  I  + DV+ WN
Sbjct: 347 SGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWN 406

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISW--------NSVILGFLRN-------- 446
           T+L A  D    G+    F+ M L GI PN +S+        NS  L F R         
Sbjct: 407 TMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTR 466

Query: 447 --------------------GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                               G ++EA+ +F +M       +L+TW  ++    QN    E
Sbjct: 467 RRDYVESSVATMLVSMYGKCGSISEAELVFKEMPL--PSRSLVTWNVMLGAYAQNDRSKE 524

Query: 487 AILFFQEMLETGIKPSTTTITCALSAC---TDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
           A     EML+ G+ P   + T  LS+C    +   LR      GY      CL     T+
Sbjct: 525 AFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGY---RSACLE----TA 577

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+ M+ +C  + QA+ VF+     ++  + AM+S  A +    E   LF+ +Q +G+ PD
Sbjct: 578 LISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPD 637

Query: 604 SITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
             T    L+ C  +  +  G  +      +G+ +D  V+ ++      +N+ S CG+  E
Sbjct: 638 KFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENAL------LNMYSNCGDWRE 691

Query: 659 ALRVILTM 666
           AL    TM
Sbjct: 692 ALSFFETM 699



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 224/478 (46%), Gaps = 32/478 (6%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+  H  +   G +  +F+ + LI+MY +CG LEEA  +F  M  RNVV+W ++I    Q
Sbjct: 44  GKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQ 103

Query: 261 NGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME---- 315
            G    A  +F  M LE    P   ++ ++L+A AN   L  G+  HA+    G+E    
Sbjct: 104 CGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERAST 163

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVD 375
              ++G+++IN Y+K G LEDA  VF  + E+D+V+W  +  +Y Q  +           
Sbjct: 164 TATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERR----------- 212

Query: 376 MYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
            Y       +A ++F  ++L+    +V+ + T L A   L        L ++  L G  P
Sbjct: 213 FYP------DALRIFREMLLQPLAPNVITFITALGACTSLRDGTWLHSLLHEASL-GFDP 265

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
             ++ N++I  + + G    A  +F  M S   + +L++W  +IS   +     +A+  F
Sbjct: 266 --LASNALINMYGKCGDWEGAYSVFKAMASRQ-ELDLVSWNAMISASVEAGRHGDAMAIF 322

Query: 492 QEMLETGIKPSTTTITCALSA-CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           + +   G++P++ T+   L+A           R  HG +          I  +++ MYAK
Sbjct: 323 RRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAK 382

Query: 551 CGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           CG    A  VF  I    ++  +N M+          + +  F ++   GIDP+ ++F  
Sbjct: 383 CGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIA 442

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
           ILNACS++  ++ G ++   + +  +          +V++  +CG++ EA  V   MP
Sbjct: 443 ILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMP 500


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 228/736 (30%), Positives = 379/736 (51%), Gaps = 75/736 (10%)

Query: 71  KCRNFQIGPEIYGELLQGCVYK-RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129
           K   F + P +   +L+  + K +++    QI ++++ +G  F ++ +  ++L+ F  + 
Sbjct: 14  KIPTFTLKPTLTLPILETHLQKCQNIKQFNQILSQMILSG--FFKDSFAASRLLKFSTEL 71

Query: 130 DALDV--ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPN 187
             +++  + ++F  +   N F    ++    +     KA+  +  M E  V+ DN+  P 
Sbjct: 72  PFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPI 131

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           + ++C        G+ +  +VLKVGFD  V++ ++LI+MY  CG+L +ARKVFDG    +
Sbjct: 132 LFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLD 191

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           +V+WNSM+ GYV  G  EEA  V+  M      P R                        
Sbjct: 192 MVSWNSMLAGYVLVGNVEEAKDVYDRM------PER------------------------ 221

Query: 308 VAVINGMELDNVLGS-SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS- 365
                     NV+ S S+I  + K G +E+A  +F+ M ++D+V+W+ LI+ Y Q+    
Sbjct: 222 ----------NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYE 271

Query: 366 ----------------DVVVASSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLL 405
                           D VV  S++   ++   +   K V   +    I   V L N L+
Sbjct: 272 EALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALI 331

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
             Y+       A +LF     E    + ISWNS+I G+++ G++ +A+ +F  M      
Sbjct: 332 HMYSSCEEVVTAQKLFS----ESCCLDQISWNSMISGYVKCGEIEKARALFDSMPD---- 383

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            + ++W+ +ISG  Q     E ++ FQEM   G KP  T +   +SACT +A+L  G+ I
Sbjct: 384 KDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWI 443

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           H Y+ ++ L +   + T+L++MY K G +  A  VF     K +  +NA+I G AM+GL 
Sbjct: 444 HAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLV 503

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            ++L  F  +++ G+ P+ ITF  +L AC H GLV+EG   F  M  +H++ P+++H+GC
Sbjct: 504 DKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGC 563

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           +V+LL R G L EA  +I +MP  PD    G+LL  C K  + E  E I   L++L PD+
Sbjct: 564 MVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDH 623

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
            G  V LSN YA+ G W +V +VR +M++ G+ K PGCS I+    +H F+A D++HP+ 
Sbjct: 624 DGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQN 683

Query: 766 EEIYATLALLGMHVRL 781
           E I   L  +   ++L
Sbjct: 684 EHIEHMLDEMAKKLKL 699



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 166/352 (47%), Gaps = 41/352 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           IS   + +   EA+ L  EM      +   +   +L  C     + TG+ +H  ++K G 
Sbjct: 261 ISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGI 320

Query: 110 -----------DFFARNEYVETKLVVF-----------------YAKCDALDVASRLFCR 141
                        ++  E V T   +F                 Y KC  ++ A  LF  
Sbjct: 321 ETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDS 380

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  K+  SW+A+I    +     + L+ F EMQ +G  PD  +L +V+ AC  L  +  G
Sbjct: 381 MPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG 440

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H Y+ K G    + + ++LI+MY K G +E+A +VF G+  + V  WN++I+G   N
Sbjct: 441 KWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMN 500

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           GL +++++ F EM   GV P  ++  ++L A  ++  +DEG +       N M  ++ +G
Sbjct: 501 GLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRH-----FNSMIQEHKIG 555

Query: 322 SSI------INFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSD 366
            +I      ++   + G+L++AE +   M +  D+ TW  L+ +  + G ++
Sbjct: 556 PNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNE 607



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 4/227 (1%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  +++ +  E + L  EM+    +    I   ++  C +   +  G+ IHA I
Sbjct: 388 SWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYI 447

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            KNG     N  + T L+  Y K   ++ A  +F  L  K V +W A+I      GL +K
Sbjct: 448 RKNG--LKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDK 505

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDGCVFVASSLI 224
           +L  F EM+E GV+P+      VL AC  +G V  G R  +  + +      +     ++
Sbjct: 506 SLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMV 565

Query: 225 DMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRV 270
           D+ G+ G L+EA ++ + M +A +V  W +++    + G NE   R+
Sbjct: 566 DLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERI 612


>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 227/795 (28%), Positives = 372/795 (46%), Gaps = 158/795 (19%)

Query: 70  MKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129
           M+ R  +   + Y  L +GC     +   +++HARI K+G  F   + + ++L+  Y   
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSG--FDGEDVLGSRLIDIYLAH 58

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
             +D A +LF  +   NV  W  +I       L+ + L  F  M  + V+PD     +VL
Sbjct: 59  GEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVL 118

Query: 190 KAC-GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           +AC G          +H  ++  GF     V + LID+Y K G ++ A+ VF+ +  ++ 
Sbjct: 119 RACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDS 178

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
           V+W +MI G  QNG  +EAI +F +M    V PT    +S+LSA   ++    G+Q H  
Sbjct: 179 VSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGF 238

Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG----- 363
            V  G+  +  + ++++  YS+ G L  AE +FS+M  RD +++N LI+   Q G     
Sbjct: 239 IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298

Query: 364 -----------------------------------------------QSDVVVASSIVDM 376
                                                           SD+++  S++D+
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           Y KC  I+ A + F +    +VVLWN +L AY  LG   E+  +F QMQ+EG+ PN  ++
Sbjct: 359 YVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTY 418

Query: 437 NSVI----------LG-------------------------FLRNGQMNEAKDMFLQMQS 461
            S++          LG                         + ++G+++ A+ +  +++ 
Sbjct: 419 PSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR- 477

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
              + ++++WT +I+G TQ+    EA+  FQEM   GI+      + A+SAC  + +L  
Sbjct: 478 ---EEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQ 534

Query: 522 GRAIH------GYLIRHDLCLPTPIVTS-LVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
           G+ IH      GY    DL +   + ++ L+ +Y+KCG+I  AKR F   P K +  +NA
Sbjct: 535 GQQIHAQSYISGY--SEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNA 592

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           MI+GY+ HG   EA++LF+ ++Q G+ P+ +T                    FVG     
Sbjct: 593 MITGYSQHGYGSEAVSLFEEMKQLGLMPNHVT--------------------FVG----- 627

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
                                          MP +PDA I  +LLS C      E+ E+ 
Sbjct: 628 ------------------------------EMPIEPDAMIWRTLLSACTVHKNIEIGEFA 657

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           + HLL+LEP++   YV LSN YA SG+W+   + R +MK++G++K PG SWI++   +H 
Sbjct: 658 ARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHA 717

Query: 755 FVACDRSHPKTEEIY 769
           F   DR HP  E+IY
Sbjct: 718 FFVGDRLHPLAEQIY 732



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 150/536 (27%), Positives = 254/536 (47%), Gaps = 61/536 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS LS+  +  EA+ L  +M        P ++  +L  C        G+Q+H  I
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFI 239

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K G   +   +V   LV  Y++   L  A ++F ++  ++  S+ ++I    + G S++
Sbjct: 240 VKWG--LSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDR 297

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  F +MQ D + PD   + ++L AC ++G    G+ +H YV+K+G    + +  SL+D
Sbjct: 298 ALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLD 357

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y KC D+E A + F      NVV WN M+V Y Q G   E+  +F +M +EG+ P + +
Sbjct: 358 LYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYT 417

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
             SIL    +L ALD G+Q H   + +G + +  + S +I+ Y+K G L+ A  +  R+ 
Sbjct: 418 YPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR 477

Query: 346 ERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQ 388
           E D+V+W  +IA Y Q                   +SD +  SS +   A  + ++  +Q
Sbjct: 478 EEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQ 537

Query: 389 VF---------NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
           +            + + + +  N L+  Y+  G   +A R F++M       N++SWN++
Sbjct: 538 IHAQSYISGYSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMP----EKNVVSWNAM 593

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           I G+ ++G  +EA  +F +M+ LG+ PN +T+                        E  I
Sbjct: 594 ITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVG----------------------EMPI 631

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL-PTPIVTS--LVDMYAKCG 552
           +P        LSACT   ++  G     +  RH L L P    T   L +MYA  G
Sbjct: 632 EPDAMIWRTLLSACTVHKNIEIGE----FAARHLLELEPEDSATYVLLSNMYAVSG 683


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 213/717 (29%), Positives = 363/717 (50%), Gaps = 64/717 (8%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           + EL++  +  RD   GQ +H+ ++K G     + +    ++  Y K + LD+A ++F R
Sbjct: 70  WPELIKISIGSRDFLLGQAVHSYLVKAGS--QDDTFKGNNVLNLYVKFNRLDLAQKVFDR 127

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +R +N  +W ++I         + A     +M + G + +      +L+AC +      G
Sbjct: 128 MRTRNTITWTSLIKGYLEDNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILG 187

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             +H +V+K GFD  VFV +SLI MY K G  + A KVFD M  +++   N MI+ Y + 
Sbjct: 188 EQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRA 247

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G   +AI VF  +  +G EPT  + T+I+S       ++EGKQ   +A   G   +  +G
Sbjct: 248 GNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVG 307

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------------- 365
           ++II  Y   G+ ++AE +FS M E+++++W  LI+ Y +SG                  
Sbjct: 308 NAIITMYGNSGMPKEAERMFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGI 367

Query: 366 --DVVVASSIVDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEAS 418
             D  + ++I+D  + C  ++   Q+ +  +++     DV +   L+  YA   +   A 
Sbjct: 368 NFDSTLLTAILDCCSDCNNLELGLQI-HGFVMKLGCACDVNVATALVDLYAKCEKLQSAR 426

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
            +F  +  +GI+    S+N+++ GFL +    E                           
Sbjct: 427 IVFDHLSNKGIA----SFNAILAGFLESSGDEE--------------------------- 455

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
                  + ++ F ++   G+KP   T +  LS   + ASL  GR+ H Y ++       
Sbjct: 456 -------DPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGRSFHAYTVKTGFDTNI 508

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            +  S++ MYAKCG+I  A ++F+I   ++   +NA+IS YA+HG A ++L LF+ +++K
Sbjct: 509 SVANSVISMYAKCGSIEDAHQMFNIMNCRDSISWNALISAYALHGQAQKSLFLFEEMKRK 568

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           G DPD  T   IL AC+++GL  +G+ LF  M   + +KP +EH+ C+ +LL R G L E
Sbjct: 569 GFDPDEFTILAILQACTYSGLWKDGICLFNLMEPKYGIKPLLEHYACMADLLGRAGYLSE 628

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           A+ +I   P      +  +L++ C         +  S+HLL L P   G+Y+ +SN YA+
Sbjct: 629 AMDIIKRSPFPKSTLLWRTLVNVCKLHGNLNFGKLASKHLLDLSPVEAGSYILVSNMYAS 688

Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
               +E ++VR +M +   RK  G SWI+I  ++H FVA D+ HP++ EIY  L LL
Sbjct: 689 EKMSDEAAKVRKVMNDLKFRKEAGSSWIEIDNKVHHFVASDKDHPESREIYTRLELL 745


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 189/570 (33%), Positives = 305/570 (53%), Gaps = 27/570 (4%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +   ++  GF    ++   L+ +      +  AR++FD +   N+  WNSM  GY Q+  
Sbjct: 57  IQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSES 116

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
             E + +F++M    + P   +   +L +   ++AL EG+Q H   +  G   +  +G++
Sbjct: 117 YREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTT 176

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
           +I+ YS  G + DA  +F  M ER++V W  +I  Y+ S  +D+V A  + D+  +    
Sbjct: 177 LIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILS--ADLVSARRLFDLAPE---- 230

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
                       RDVVLWN +++ Y + G   EA +LF++M     + +++ WN+V+ G+
Sbjct: 231 ------------RDVVLWNIMVSGYIEGGDMVEARKLFHEMP----NRDVMFWNTVLKGY 274

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPS 502
             NG +   + +F +M     + N+ +W  LI G   N    E +  F+ ML E+ + P+
Sbjct: 275 ATNGNVEALEGLFEEMP----ERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPN 330

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
             T+   LSAC  + +L  G+ +H Y     L     +  +L+DMYAKCG I  A  VF 
Sbjct: 331 DATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFR 390

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
              +K+L  +N +I G AMH    +AL LF  ++  G  PD ITF  IL AC+H GLV +
Sbjct: 391 GMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVED 450

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G   F  M  D+ + P +EH+GC+V++L+R G L++A+  +  MP + D  I   LL  C
Sbjct: 451 GFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGAC 510

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
                 ELAE   + L++LEP NP NYV LSN Y  +GRW +V++++  M++ G +K PG
Sbjct: 511 RIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPG 570

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           CS I++ + +  F + D  HP+ EEIY  L
Sbjct: 571 CSLIEVNDAVVEFYSLDERHPQIEEIYGVL 600



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 212/473 (44%), Gaps = 75/473 (15%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           E +  LLQ C   + ++   QI A+I+ NG  F  NEY+  KLV   A    +  A +LF
Sbjct: 39  ERFISLLQSCKTSKQVH---QIQAQIIANG--FQYNEYITPKLVTICATLKRMTYARQLF 93

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
            ++   N+  W ++     +     + +  F +M+   + P+ F  P VLK+CG +  + 
Sbjct: 94  DQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALI 153

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            G  VH +++K GF G  FV ++LIDMY   G + +A K+F  M  RNVVAW SMI GY+
Sbjct: 154 EGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYI 213

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM-ELDN 318
            +     A R+F       + P R  V   +  S  ++    G    A  + + M   D 
Sbjct: 214 LSADLVSARRLF------DLAPERDVVLWNIMVSGYIEG---GDMVEARKLFHEMPNRDV 264

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
           +  ++++  Y+  G +E  E +F  M ER+I +WN LI  Y  +G               
Sbjct: 265 MFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSE 324

Query: 364 --------------------------------------QSDVVVASSIVDMYAKCERIDN 385
                                                 + +V V ++++DMYAKC  I+N
Sbjct: 325 SDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIEN 384

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A  VF  +  +D++ WNTL+   A   R  +A  LF+QM+  G  P+ I++  ++     
Sbjct: 385 AISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACT- 443

Query: 446 NGQMNEAKDMFLQMQSLG----VQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
              M   +D F   QS+     + P +  +  ++  L +     +A+ F ++M
Sbjct: 444 --HMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKM 494



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 186/420 (44%), Gaps = 50/420 (11%)

Query: 73  RNFQIGPE----IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK 128
           R F + PE    ++  ++ G +   DM   +++    + N D    N  ++      YA 
Sbjct: 223 RLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHE-MPNRDVMFWNTVLKG-----YAT 276

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPN 187
              ++    LF  +  +N+FSW A+IG     GL  + L  F  M  E  V P++  L  
Sbjct: 277 NGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVT 336

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           VL AC  LG +  G+ VH Y    G  G V+V ++L+DMY KCG +E A  VF GM  ++
Sbjct: 337 VLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKD 396

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           +++WN++I G   +    +A+ +F++M   G +P  ++   IL A  ++  +++G     
Sbjct: 397 LISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG----- 451

Query: 308 VAVINGMELDNVLGSSI------INFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYV 360
            A    M  D ++   I      ++  ++ G LE A     +M VE D V W  L+ +  
Sbjct: 452 FAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGA-- 509

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
                          +Y   E  + A Q    +  ++   +  L   Y D GR  + +RL
Sbjct: 510 -------------CRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARL 556

Query: 421 FYQMQLEGISP----NIISWNSVILGFL----RNGQMNEA----KDMFLQMQSLGVQPNL 468
              M+  G       ++I  N  ++ F     R+ Q+ E     + +   ++S G  P+L
Sbjct: 557 KVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPDL 616



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 159/321 (49%), Gaps = 20/321 (6%)

Query: 40  YESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQ 99
           + S+++ Y       ++ +  RE V L  +MK  + +     +  +L+ C     +  G+
Sbjct: 104 WNSMFRGY-------AQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGE 156

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           Q+H  ++K G  F  N +V T L+  Y+    +  A ++FC +  +NV +W ++I     
Sbjct: 157 QVHCFLIKCG--FRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMIN---- 210

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVF 218
            G    A +       D     + VL N++ +    G++  G  V    L     +  V 
Sbjct: 211 -GYILSADLVSARRLFDLAPERDVVLWNIMVS----GYIEGGDMVEARKLFHEMPNRDVM 265

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
             ++++  Y   G++E    +F+ M  RN+ +WN++I GY  NGL  E +  F  M  E 
Sbjct: 266 FWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSES 325

Query: 279 -VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            V P   ++ ++LSA A L ALD GK  H  A  +G++ +  +G+++++ Y+K G++E+A
Sbjct: 326 DVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENA 385

Query: 338 EVVFSRMVERDIVTWNLLIAS 358
             VF  M  +D+++WN LI  
Sbjct: 386 ISVFRGMDTKDLISWNTLIGG 406


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 216/685 (31%), Positives = 370/685 (54%), Gaps = 28/685 (4%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           QI A+++ +G  +  +    TKL   +    A+    +LF ++   ++F +  +I     
Sbjct: 32  QIQAQLILHGIHYDLSSI--TKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSD 89

Query: 160 VGLSEKALIGFVEMQED-GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
            GL + ++  +  +++   + PDNF     + A   L     G  +H + +  G    +F
Sbjct: 90  NGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLF 149

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V S+++D+Y K    E ARKVFD M  R+ V WN+MI G+ +N   E++IRVF +M   G
Sbjct: 150 VGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVG 209

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           +     ++ ++L+A A L     G     +A   G+  D  + + +I+ YSK G      
Sbjct: 210 LSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGR 269

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
           ++F ++ + D++++N +I+ Y  + +++  V +   ++ A  +R++++  V         
Sbjct: 270 ILFDQIDQPDLISYNAMISGYTFNHETESAV-TLFRELLASGQRVNSSTLV--------- 319

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLE-GI--SPNIISWNSVILGFLRNGQMNEAKDM 455
                L+  Y       + SRL   + L+ GI   P++ +  + +  + R  ++  A+ +
Sbjct: 320 ----GLIPVYLPFNHL-QLSRLIQNLSLKIGIILQPSVSTALTTV--YCRLNEVQFARQL 372

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +      + +L +W  +ISG TQN   + AI  FQEM+   + P+  T+T  LSAC  
Sbjct: 373 FDE----SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQ 427

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           + +L  G+ +HG +    L     + T+LVDMYAKCG+I +A+++FD+   K +  +NAM
Sbjct: 428 LGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAM 487

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I+GY +HG   EAL LF  + Q GI P  +TF +IL ACSH+GLV+EG E+F  M +++ 
Sbjct: 488 ITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYG 547

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
            +P  EH+ C+V++L R G L  AL  I  MP +P   + G+LL  C+    TE+A   S
Sbjct: 548 FQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVAS 607

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           + L QL+P+N G YV LSN Y+    + + + VR ++K++ L K PGC+ I+I ++ +VF
Sbjct: 608 KRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVF 667

Query: 756 VACDRSHPKTEEIYATLALLGMHVR 780
            + DRSHP+   I+  L  L   +R
Sbjct: 668 TSGDRSHPQATAIFEMLEKLTGKMR 692



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/487 (23%), Positives = 216/487 (44%), Gaps = 62/487 (12%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D   G  +HA  + +G   A N +V + +V  Y K    ++A ++F  +  ++   W  +
Sbjct: 128 DERVGVLLHAHSIVDG--VASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTM 185

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I    R    E ++  FV+M + G+S D+  L  VL A   L     G  +     K G 
Sbjct: 186 ISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGL 245

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
              V+V + LI +Y KCG   + R +FD +   +++++N+MI GY  N   E A+ +F E
Sbjct: 246 HSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRE 305

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           +   G      ++  ++      + L   +    +++  G+ L   + +++   Y ++  
Sbjct: 306 LLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNE 365

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------------------ 363
           ++ A  +F    E+ + +WN +I+ Y Q+G                              
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSAC 425

Query: 364 ---------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                +S+V V++++VDMYAKC  I  A+Q+F+ ++ ++VV WN
Sbjct: 426 AQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWN 485

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QS 461
            ++  Y   G   EA +LFY+M   GI P  +++ S++     +G ++E  ++F  M  +
Sbjct: 486 AMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANN 545

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC-----TDV 516
            G QP    +  ++  L +      A+ F + M    ++P        L AC     T++
Sbjct: 546 YGFQPMSEHYACMVDILGRAGQLTNALEFIERM---PLEPGPAVWGALLGACMIHKNTEM 602

Query: 517 ASLRNGR 523
           A++ + R
Sbjct: 603 ANVASKR 609


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  355 bits (911), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 201/613 (32%), Positives = 321/613 (52%), Gaps = 133/613 (21%)

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII---------------------- 325
           S+L   A+L ++ +G++ H++   N +E+D VLGS ++                      
Sbjct: 106 SVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANE 165

Query: 326 ---------NFYSKVGLLEDAEVVFSRMVE------------------RDIVTWNLLIAS 358
                    N Y+K+G   ++  +F RM E                  RD+++WN +I+ 
Sbjct: 166 KVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISG 225

Query: 359 YVQSGQSD-----------------------VVVASS----------------------- 372
           YV +G S+                       VV   S                       
Sbjct: 226 YVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKE 285

Query: 373 ------IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                 ++DMY+K   +++A QVF ++  R VV W +++A YA  G S  + RLF++M+ 
Sbjct: 286 LTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK 345

Query: 427 EGISPNIISWNSVI-----LGFLRNGQ-----------------MNEAKDMFLQMQSLGV 464
           EGISP+I +  +++      G L NG+                  N   DM+ +  S+G 
Sbjct: 346 EGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGD 405

Query: 465 Q---------PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
                      ++++W T+I G ++NS  NEA+  F EM +   KP++ T+ C L AC  
Sbjct: 406 AHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACAS 464

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +A+L  G+ IHG+++R+   L   +  +LVDMY KCG +  A+ +FD+ P K+L  +  M
Sbjct: 465 LAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVM 524

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I+GY MHG   EA+A F  ++  GI+PD ++F +IL ACSH+GL++EG   F  M ++  
Sbjct: 525 IAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCC 584

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           ++P  EH+ C+V+LL+R GNL +A + I  MP +PDA I G+LL  C   ++ +LAE ++
Sbjct: 585 IEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVA 644

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           EH+ +LEP+N G YV L+N YA + +W EV ++R+ +  +GLRKNPGCSWI+I  ++H+F
Sbjct: 645 EHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIF 704

Query: 756 VACDRSHPKTEEI 768
           V  D SHP   +I
Sbjct: 705 VTGDSSHPLANKI 717



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/434 (29%), Positives = 213/434 (49%), Gaps = 55/434 (12%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           ++ A +LF  L  ++V SW ++I      GLSEK L  F +M   G++ D   + +V+  
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAG 260

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C   G +  GRA+HGY +K  F   + + + L+DMY K G+L  A +VF+ M  R+VV+W
Sbjct: 261 CSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 320

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
            SMI GY + GL++ ++R+F+EM  EG+ P   ++T+IL A A    L+ GK  H     
Sbjct: 321 TSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKE 380

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY------------ 359
           N M+ D  + +++++ Y+K G + DA  VFS M  +DIV+WN +I  Y            
Sbjct: 381 NKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNL 440

Query: 360 ---------------------------VQSGQS------------DVVVASSIVDMYAKC 380
                                      ++ GQ             D  VA+++VDMY KC
Sbjct: 441 FVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKC 500

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             +  A+ +F+ I  +D+V W  ++A Y   G   EA   F +M+  GI P+ +S+ S++
Sbjct: 501 GALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISIL 560

Query: 441 LGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
                +G ++E    F  M+ +  ++P    +  ++  L +    ++A  F + M    I
Sbjct: 561 YACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMM---PI 617

Query: 500 KPSTTTITCALSAC 513
           +P  T     L  C
Sbjct: 618 EPDATIWGALLCGC 631



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 211/417 (50%), Gaps = 21/417 (5%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           + +DL  +M              ++ GC     +  G+ +H   +K    F +   +   
Sbjct: 234 KGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKAS--FGKELTLNNC 291

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  Y+K   L+ A ++F  +  ++V SW ++I    R GLS+ ++  F EM+++G+SPD
Sbjct: 292 LLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPD 351

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
            F +  +L AC   G +  G+ VH Y+ +      +FV+++L+DMY KCG + +A  VF 
Sbjct: 352 IFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFS 411

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M  +++V+WN+MI GY +N L  EA+ +F EM     +P  +++  IL A A+L AL+ 
Sbjct: 412 EMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALER 470

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           G++ H   + NG  LD  + +++++ Y K G L  A ++F  + E+D+V+W ++IA Y  
Sbjct: 471 GQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGM 530

Query: 362 SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
            G     +A+                ++ NS I  D V + ++L A +  G   E    F
Sbjct: 531 HGYGSEAIAA--------------FNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFF 576

Query: 422 YQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
             M+    I P    +  ++    R G +++A   F++M  + ++P+   W  L+ G
Sbjct: 577 NMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYK-FIKM--MPIEPDATIWGALLCG 630



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 110/227 (48%), Gaps = 56/227 (24%)

Query: 493 EMLETGIKPSTT--TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           E++    KP     T    L  C D+ S+++GR IH  +  +D+ +   + + LV MY  
Sbjct: 89  ELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVT 148

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI---------- 600
           CG++ + +R+FD   ++++ ++N +++GYA  G   E+L+LFK +++ GI          
Sbjct: 149 CGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLF 208

Query: 601 ----DPDSITFTNILNACSHAGLVNEGLELF-----VGMFSD------------------ 633
               D D I++ ++++     GL  +GL+LF     +G+ +D                  
Sbjct: 209 DELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLL 268

Query: 634 -------HQVKPSMEHFG-------CVVNLLSRCGNLDEALRVILTM 666
                  + +K S   FG       C++++ S+ GNL+ A++V  TM
Sbjct: 269 LGRALHGYAIKAS---FGKELTLNNCLLDMYSKSGNLNSAIQVFETM 312


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  355 bits (911), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 216/685 (31%), Positives = 370/685 (54%), Gaps = 28/685 (4%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           QI A+++ +G  +  +    TKL   +    A+    +LF ++   ++F +  +I     
Sbjct: 32  QIQAQLILHGIHYDLSSI--TKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSD 89

Query: 160 VGLSEKALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
            GL + ++  +  +++   + PDNF     + A   L     G  +H + +  G    +F
Sbjct: 90  NGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLF 149

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V S+++D+Y K    E ARKVFD M  R+ V WN+MI G+ +N   E++IRVF +M   G
Sbjct: 150 VGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVG 209

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           +     ++ ++L+A A L     G     +A   G+  D  + + +I+ YSK G      
Sbjct: 210 LSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGR 269

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
           ++F ++ + D++++N +I+ Y  + +++  V +   ++ A  +R++++  V         
Sbjct: 270 ILFDQIDQPDLISYNAMISGYTFNHETESAV-TLFRELLASGQRVNSSTLV--------- 319

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLE-GI--SPNIISWNSVILGFLRNGQMNEAKDM 455
                L+  Y       + SRL   + L+ GI   P++ +  + +  + R  ++  A+ +
Sbjct: 320 ----GLIPVYLPFNHL-QLSRLIQNLSLKIGIILQPSVSTALTTV--YCRLNEVQFARQL 372

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +      + +L +W  +ISG TQN   + AI  FQEM+   + P+  T+T  LSAC  
Sbjct: 373 FDE----SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQ 427

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           + +L  G+ +HG +    L     + T+LVDMYAKCG+I +A+++FD+   K +  +NAM
Sbjct: 428 LGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAM 487

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I+GY +HG   EAL LF  + Q GI P  +TF +IL ACSH+GLV+EG E+F  M +++ 
Sbjct: 488 ITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYG 547

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
            +P  EH+ C+V++L R G L  AL  I  MP +P   + G+LL  C+    TE+A   S
Sbjct: 548 FQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVAS 607

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           + L QL+P+N G YV LSN Y+    + + + VR ++K++ L K PGC+ I+I ++ +VF
Sbjct: 608 KRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVF 667

Query: 756 VACDRSHPKTEEIYATLALLGMHVR 780
            + DRSHP+   I+  L  L   +R
Sbjct: 668 TSGDRSHPQATAIFEMLEKLTGKMR 692



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/487 (23%), Positives = 216/487 (44%), Gaps = 62/487 (12%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D   G  +HA  + +G   A N +V + +V  Y K    ++A ++F  +  ++   W  +
Sbjct: 128 DERVGVLLHAHSIVDG--VASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTM 185

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I    R    E ++  FV+M + G+S D+  L  VL A   L     G  +     K G 
Sbjct: 186 ISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGL 245

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
              V+V + LI +Y KCG   + R +FD +   +++++N+MI GY  N   E A+ +F E
Sbjct: 246 HSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRE 305

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           +   G      ++  ++      + L   +    +++  G+ L   + +++   Y ++  
Sbjct: 306 LLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNE 365

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------------------ 363
           ++ A  +F    E+ + +WN +I+ Y Q+G                              
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSAC 425

Query: 364 ---------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                +S+V V++++VDMYAKC  I  A+Q+F+ ++ ++VV WN
Sbjct: 426 AQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWN 485

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QS 461
            ++  Y   G   EA +LFY+M   GI P  +++ S++     +G ++E  ++F  M  +
Sbjct: 486 AMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANN 545

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC-----TDV 516
            G QP    +  ++  L +      A+ F + M    ++P        L AC     T++
Sbjct: 546 YGFQPMSEHYACMVDILGRAGQLTNALEFIERM---PLEPGPAVWGALLGACMIHKNTEM 602

Query: 517 ASLRNGR 523
           A++ + R
Sbjct: 603 ANVASKR 609


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  355 bits (911), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 201/610 (32%), Positives = 334/610 (54%), Gaps = 62/610 (10%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           F  ++++  Y K G LE+A +VFD +  R+ V+W ++IVGY Q G  E+AI++F +M  +
Sbjct: 42  FSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKD 101

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            V PT+ ++T++L++ A   +   GK+ H+  V  G+     + +S++N Y+K G L+ A
Sbjct: 102 KVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMA 161

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVAS----------SIVDMYAKCER--IDN 385
           +VVF RM  R+  +WN +I+ ++  G+ D+ +A           S   M A C +   DN
Sbjct: 162 KVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDN 221

Query: 386 AKQVFNSIILRDVVL-----------------------------------------WNTL 404
               F S IL+D  L                                          N L
Sbjct: 222 EALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNAL 281

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISP-NIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           ++ YA  G    A R+  Q    GIS  ++I++ +++ G+++ G +  A+ +F  ++   
Sbjct: 282 ISMYAKSGGVEIARRIIEQ---SGISDLDVIAFTALLNGYVKLGDITPARQIFNSLK--- 335

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
             P+++ WT +I G  QN   N+AI  F+ M+  G +P++ T+   LSA + V SL +G+
Sbjct: 336 -DPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGK 394

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI-SPSKELPVYNAMISGYAMH 582
            IH   IR    L   +  +L  MYAK G+I+ A++VF++   +++   + +MI   A H
Sbjct: 395 QIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH 454

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           GL  EA+ LF+ +   GI PD IT+  +L+AC+H GLV +G   F  M + H++ P++ H
Sbjct: 455 GLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSH 514

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           + C+V+L  R G L EA + +  MP +PD    GSLLS+C      +LA+  +E LL +E
Sbjct: 515 YACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIE 574

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           P+N G Y AL+N Y++ G+W++ +++R +MK +G++K  G SW+QI  + HVF   D  H
Sbjct: 575 PNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLH 634

Query: 763 PKTEEIYATL 772
           P+ +EIY  +
Sbjct: 635 PQKDEIYKMM 644



 Score =  222 bits (565), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 175/610 (28%), Positives = 275/610 (45%), Gaps = 133/610 (21%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           YAK   L+ A ++F  + V++  SW  II    ++G  E A+  FV+M +D V P  F L
Sbjct: 51  YAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTL 110

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
            NVL +C A G  G G+ VH +V+K+G   CV VA+SL++MY K GDL+ A+ VFD M  
Sbjct: 111 TNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKL 170

Query: 246 RN-------------------------------VVAWNSMIVGYVQNGLNEEAIRVFYEM 274
           RN                               +V+WNSMI G  Q+G + EA++ F  +
Sbjct: 171 RNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSI 230

Query: 275 TLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
             +  ++P R S+ S LSA ANL+ L  GKQ H   V    +    +G+++I+ Y+K G 
Sbjct: 231 LKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGG 290

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQS--DVVVASSIVDMYAKCERIDNAKQVFN 391
           +E A     R++E              QSG S  DV+  +++++ Y K   I  A+Q+FN
Sbjct: 291 VEIAR----RIIE--------------QSGISDLDVIAFTALLNGYVKLGDITPARQIFN 332

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW--------------- 436
           S+   DVV W  ++  Y   G + +A  +F  M  EG  PN  +                
Sbjct: 333 SLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNH 392

Query: 437 --------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
                               N++   + + G +N A+ +F  ++      + ++WT++I 
Sbjct: 393 GKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQ---NRDTVSWTSMIM 449

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
            L Q+  G EAI  F++ML  GIKP   T    LSACT    +  GR             
Sbjct: 450 ALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGR------------- 496

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
                 S  D+          K V  I P+  L  Y  M+  +   GL  EA    +N+ 
Sbjct: 497 ------SYFDLM---------KNVHKIDPT--LSHYACMVDLFGRAGLLQEAYKFVENMP 539

Query: 597 QKGIDPDSITFTNILNAC---SHAGLVNEGLELFVGMFSDHQVKPSME-HFGCVVNLLSR 652
              ++PD I + ++L++C    +  L     E  +       ++P+    +  + N+ S 
Sbjct: 540 ---MEPDVIAWGSLLSSCKVYKNVDLAKVAAERLL------LIEPNNSGAYSALANVYSS 590

Query: 653 CGNLDEALRV 662
           CG  D+A ++
Sbjct: 591 CGKWDDAAKI 600



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 214/459 (46%), Gaps = 86/459 (18%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  C        G+++H+ ++K G        V   L+  YAK   L +A  +F R+++
Sbjct: 113 VLASCAATGSRGIGKKVHSFVVKLG--LHACVPVANSLLNMYAKTGDLKMAKVVFDRMKL 170

Query: 145 KNVFSWAAIIGLNCRVG-----------LSEKALIGFVEM-------------------- 173
           +N  SW A+I L+   G           LSE+ ++ +  M                    
Sbjct: 171 RNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSI 230

Query: 174 -QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC-- 230
            ++  + PD F L + L AC  L  + FG+ +HGY+++  FD    V ++LI MY K   
Sbjct: 231 LKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGG 290

Query: 231 -------------------------------GDLEEARKVFDGMIARNVVAWNSMIVGYV 259
                                          GD+  AR++F+ +   +VVAW +MIVGYV
Sbjct: 291 VEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYV 350

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           QNGLN +AI VF  M  EG  P   ++ ++LSAS+++ +L+ GKQ HA A+ +G  L   
Sbjct: 351 QNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPS 410

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVE-RDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
           +G+++   Y+K G +  A  VF+ + + RD V+W  +I +  Q G  +            
Sbjct: 411 VGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGE------------ 458

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWN 437
             E I+  +Q+    I  D + +  +L+A    G   +    F  M+ +  I P +  + 
Sbjct: 459 --EAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYA 516

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
            ++  F R G + EA   +  ++++ ++P++I W +L+S
Sbjct: 517 CMVDLFGRAGLLQEA---YKFVENMPMEPDVIAWGSLLS 552



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 117/520 (22%), Positives = 224/520 (43%), Gaps = 120/520 (23%)

Query: 313 GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASS 372
           G+     L ++++N Y+K G   DA  +F+ M  +   +WN +++ Y + G         
Sbjct: 5   GLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQG--------- 55

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP- 431
                    +++ A QVF+ I +RD V W T++  Y  +GR  +A ++F  M  + + P 
Sbjct: 56  ---------KLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPT 106

Query: 432 -----NIIS-----------------------------WNSVILGFLRNGQMNEAKDMFL 457
                N+++                              NS++  + + G +  AK +F 
Sbjct: 107 QFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFD 166

Query: 458 QMQ---------------------------SLGVQPNLITWTTLISGLTQNSCGNEAILF 490
           +M+                            L  + ++++W ++I+G  Q+   NEA+ F
Sbjct: 167 RMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQF 226

Query: 491 FQEML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
           F  +L +T +KP   ++  ALSAC ++  L  G+ IHGY++R        +  +L+ MYA
Sbjct: 227 FSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYA 286

Query: 550 KCGNIHQAKRVF------------------------DISPSKEL---------PVYNAMI 576
           K G +  A+R+                         DI+P++++           + AMI
Sbjct: 287 KSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMI 346

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV-GMFSDHQ 635
            GY  +GL  +A+ +FK +  +G  P+S T   +L+A S    +N G ++    + S   
Sbjct: 347 VGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEA 406

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           + PS+ +   +  + ++ G+++ A +V   +  + D     S++    +    E A  + 
Sbjct: 407 LSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELF 464

Query: 696 EHLLQL--EPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           E +L L  +PD+   YV + +A    G   +     D+MK
Sbjct: 465 EQMLTLGIKPDHI-TYVGVLSACTHGGLVEQGRSYFDLMK 503



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 168/344 (48%), Gaps = 24/344 (6%)

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFL 457
           V L N L+  YA  G   +A  LF +M ++       SWN+++ G+ + G++ +A  +F 
Sbjct: 10  VYLMNNLMNLYAKTGFHLDAHDLFNEMPVK----TTFSWNTILSGYAKQGKLEKAHQVF- 64

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
               L    + ++WTT+I G  Q     +AI  F +M++  + P+  T+T  L++C    
Sbjct: 65  ---DLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATG 121

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           S   G+ +H ++++  L    P+  SL++MYAK G++  AK VFD    +    +NAMIS
Sbjct: 122 SRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMIS 181

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
            +   G    ALA F+ L ++    D +++ +++  C+  G  NE L+ F  +  D  +K
Sbjct: 182 LHMNCGRVDLALAQFELLSER----DIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLK 237

Query: 638 PSMEHFGCVVNLLSRCGNLDEAL-------RVILTMPCDPDAHIIGSLLSTCVKSNETEL 690
           P  + F  + + LS C NL++          ++ TM  D    +  +L+S   KS   E+
Sbjct: 238 P--DRFS-LASALSACANLEKLSFGKQIHGYIVRTM-FDASGAVGNALISMYAKSGGVEI 293

Query: 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
           A  I E     + D    + AL N Y   G      Q+ + +K+
Sbjct: 294 ARRIIEQSGISDLDVIA-FTALLNGYVKLGDITPARQIFNSLKD 336



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 154/312 (49%), Gaps = 21/312 (6%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G +I  RI++       +    T L+  Y K   +  A ++F  L+  +V +W A+I   
Sbjct: 290 GVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGY 349

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            + GL+  A+  F  M  +G  P++F L  +L A  ++  +  G+ +H   ++ G     
Sbjct: 350 VQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSP 409

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            V ++L  MY K G +  ARKVF+ +   R+ V+W SMI+   Q+GL EEAI +F +M  
Sbjct: 410 SVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLT 469

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG--SSIINFYSKVGLL 334
            G++P  ++   +LSA  +   +++G+    + + N  ++D  L   + +++ + + GLL
Sbjct: 470 LGIKPDHITYVGVLSACTHGGLVEQGRSYFDL-MKNVHKIDPTLSHYACMVDLFGRAGLL 528

Query: 335 EDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVV----------------VASSIVDMY 377
           ++A      M +E D++ W  L++S       D+                   S++ ++Y
Sbjct: 529 QEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVY 588

Query: 378 AKCERIDNAKQV 389
           + C + D+A ++
Sbjct: 589 SSCGKWDDAAKI 600



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 98/202 (48%), Gaps = 23/202 (11%)

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +++  L     ++ +L+++YAK G    A  +F+  P K    +N ++SGYA  G   +A
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
             +F  +  +    DS+++T I+   +  G   + +++FV M  D +V P+      + N
Sbjct: 61  HQVFDLIPVR----DSVSWTTIIVGYNQMGRFEDAIKIFVDMVKD-KVLPTQ---FTLTN 112

Query: 649 LLSRC--------GNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           +L+ C        G    +  V L +  C P A+   SLL+   K+ + ++A+ + +   
Sbjct: 113 VLASCAATGSRGIGKKVHSFVVKLGLHACVPVAN---SLLNMYAKTGDLKMAKVVFD--- 166

Query: 700 QLEPDNPGNYVALSNAYAASGR 721
           +++  N  ++ A+ + +   GR
Sbjct: 167 RMKLRNTSSWNAMISLHMNCGR 188


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 200/589 (33%), Positives = 331/589 (56%), Gaps = 40/589 (6%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           F+ S LI  Y K G + +A  VF  +  +N+ +WN++ + Y  + ++ + +++F  +   
Sbjct: 39  FLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNS 98

Query: 278 G---VEPTRVSVTSILSASANLDALDEG--KQAHAVAVINGMELDNVLGSSIINFYSKVG 332
               V+P R +VT  L A A+L + + G  K+ H+  +  G+E D  + +++I FYS+  
Sbjct: 99  NSTDVKPDRFTVTCSLKALASLFS-NSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCD 157

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------QSDVVVASSIV 374
            L  A ++F RM ERD V+WN ++A Y Q G                  + + + A S++
Sbjct: 158 ELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVL 217

Query: 375 DMYAKCER----IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
              A+       I+  + V  S I  DV LWN ++  YA  G    A  LF +M      
Sbjct: 218 QACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMP----E 273

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
            + I++ S+I G++ +G +N+A D+F + +    +P L TW  +ISGL QN+    A+  
Sbjct: 274 KDGITYCSMISGYMVHGFVNQAMDLFREQE----RPRLPTWNAVISGLVQNNRQEGAVDI 329

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           F+ M   G +P+T T+   L   +  ++L+ G+ IHGY IR+       + T+++D YAK
Sbjct: 330 FRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAK 389

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           CG +H A+ VFD    + L  + ++IS YA+HG A  AL+LF  +   GI PD +TFT++
Sbjct: 390 CGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSV 449

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L AC+H+G ++E  ++F  +  ++ ++P +EH+ C+V +LSR G L +A+  I  MP +P
Sbjct: 450 LAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEP 509

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
            A + G+LL+    + + EL +Y+ + L ++EP+N GNYV ++N Y+ SGRW +   +RD
Sbjct: 510 TAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRD 569

Query: 731 IMKEKGLRKNPGCSWIQIGEELHVFVACDR-SHPKTEEIYATL-ALLGM 777
           +MKE  L+K PG SWI+    +  F  C R S  +T E+Y  L  LLG+
Sbjct: 570 LMKEVRLKKIPGNSWIETSGGMQRF--CXRHSSVRTPEVYGMLEGLLGL 616



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 163/621 (26%), Positives = 276/621 (44%), Gaps = 105/621 (16%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           YG L+Q C        G+Q+HAR++ +      + ++ +KL+ FY+K  ++  A  +F +
Sbjct: 6   YGRLIQHCTDHLFFRVGKQLHARLVLSS--VVPDNFLGSKLISFYSKSGSIRDAYNVFGK 63

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGF---VEMQEDGVSPDNFVLPNVLKACGAL-GW 197
           +  KN+FSW A+        +    L  F   V      V PD F +   LKA  +L   
Sbjct: 64  IPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSN 123

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
            G  + VH ++L+ G +  +FV ++LI  Y +C +L  AR +FD M  R+ V+WN+M+ G
Sbjct: 124 SGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAG 183

Query: 258 YVQNGLNEEAIRVFYEMTLEGVE--PTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
           Y Q G  EE   +F  M L  VE  P  ++  S+L A A  + L  G + H     + ++
Sbjct: 184 YSQGGSYEECKELFRVM-LSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIK 242

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVD 375
           +D  L +++I  Y+K G+L+ A  +F  M E+D +T+  +I+ Y+  G       +  +D
Sbjct: 243 MDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHG-----FVNQAMD 297

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
           ++ + ER               +  WN +++      R   A  +F  MQ  G  PN ++
Sbjct: 298 LFREQER-------------PRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVT 344

Query: 436 WNSVILGF----------------LRN-------------------GQMNEAKDMFLQMQ 460
             S++  F                +RN                   G ++ A+ +F Q++
Sbjct: 345 LASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIK 404

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
                 +LI WT++IS    +   N A+  F EML  GI+P   T T  L+AC     L 
Sbjct: 405 G----RSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELD 460

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYA-KCGNIHQAKRVFDISPSKELPVYNAMISGY 579
               I   L      LP   +  LV+ YA   G + +A ++ D                 
Sbjct: 461 EAWKIFNVL------LPEYGIQPLVEHYACMVGVLSRAGKLSD----------------- 497

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP- 638
                AVE ++      +  ++P +  +  +LN  S AG V  G  +F  +F   +++P 
Sbjct: 498 -----AVEFIS------KMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLF---EIEPE 543

Query: 639 SMEHFGCVVNLLSRCGNLDEA 659
           +  ++  + NL S+ G   +A
Sbjct: 544 NTGNYVIMANLYSQSGRWKDA 564


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  355 bits (910), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 202/576 (35%), Positives = 309/576 (53%), Gaps = 60/576 (10%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDM--YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           + +H  ++K G     F  S LI+       G+L  A  +F+ +   N   WN+MI G  
Sbjct: 49  KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNS 108

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
            +     AI  +  M L GVEP   +   +L + A + A  EGKQ H   +  G+E D  
Sbjct: 109 LSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPF 168

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           + +S+IN Y++ G L  AE+VFS+   RD V++  LI  Y   G                
Sbjct: 169 VHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG---------------- 212

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------- 432
           C  +D+A+++F  I +RD V WN ++A YA  GR  EA   F +M+   ++PN       
Sbjct: 213 C--LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270

Query: 433 ---------------IISW-------------NSVILGFLRNGQMNEAKDMFLQMQSLGV 464
                          + SW             N++I  + + G +++A+D+F  +     
Sbjct: 271 LSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI----C 326

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
           + ++I+W  +I G +  +   EA+  F++M ++ ++P+  T    L AC  + +L  G+ 
Sbjct: 327 EKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKW 386

Query: 525 IHGYLIRHDLCLP-TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
           IH Y+ +  L L  T + TSL+DMYAKCGNI  AK+VF     K L  +NAMISG AMHG
Sbjct: 387 IHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHG 446

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
            A  AL LF+ ++ +G +PD ITF  +L+ACSHAGLV  G + F  M  D+ + P ++H+
Sbjct: 447 HANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHY 506

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
           GC+++LL R G  DEA  ++  M   PD  I GSLL  C      EL E+ ++HL +LEP
Sbjct: 507 GCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEP 566

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           +NPG YV LSN YA +GRW++V+++R  + +KG++K
Sbjct: 567 ENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 144/549 (26%), Positives = 237/549 (43%), Gaps = 93/549 (16%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYA--KCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           +QIH++I+K G      ++  +KL+ F A      L  A  LF  +   N F W  +I  
Sbjct: 49  KQIHSQIIKTG--LHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRG 106

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
           N        A+  +V M   GV P+++  P +LK+C  +G    G+ +HG+VLK+G +  
Sbjct: 107 NSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESD 166

Query: 217 VFVASSLIDMYGKCGD-------------------------------LEEARKVFDGMIA 245
            FV +SLI+MY + G+                               L++AR++F+ +  
Sbjct: 167 PFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPV 226

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           R+ V+WN+MI GY Q+G  EEA+  F EM    V P   ++ ++LSA A   +L+ G   
Sbjct: 227 RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWV 286

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ- 364
            +    +G+  +  L +++I+ YSK G L+ A  +F  + E+DI++WN++I  Y      
Sbjct: 287 RSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSY 346

Query: 365 -----------------SDVVVAS-----------------------------------S 372
                            +DV   S                                   S
Sbjct: 347 KEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTS 406

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           ++DMYAKC  I+ AKQVF  +  + +  WN +++  A  G +  A  LF QM+ EG  P+
Sbjct: 407 LIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPD 466

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
            I++  V+      G +   +  F  M +   + P L  +  +I  L +    +EA    
Sbjct: 467 DITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALM 526

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
           + M    +KP        L AC    ++  G     +L   +   P   V  L ++YA  
Sbjct: 527 KNM---EMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVL-LSNIYATA 582

Query: 552 GNIHQAKRV 560
           G      R+
Sbjct: 583 GRWDDVARI 591



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 209/444 (47%), Gaps = 48/444 (10%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG------------D 110
           A+D    M     +     +  LL+ C        G+QIH  +LK G            +
Sbjct: 116 AIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLIN 175

Query: 111 FFARNE---YVE--------------TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
            +A+N    Y E              T L+  Y     LD A RLF  + V++  SW A+
Sbjct: 176 MYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAM 235

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I    + G  E+AL  F EM+   V+P+   +  VL AC   G +  G  V  ++   G 
Sbjct: 236 IAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGL 295

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
              + + ++LIDMY KCGDL++AR +F+G+  +++++WN MI GY      +EA+ +F +
Sbjct: 296 GSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRK 355

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV-LGSSIINFYSKVG 332
           M    VEP  V+  SIL A A L ALD GK  HA      + L N  L +S+I+ Y+K G
Sbjct: 356 MQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCG 415

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
            +E A+ VF+ M  + + +WN +I+     G +++               ++  +Q+ + 
Sbjct: 416 NIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMA--------------LELFRQMRDE 461

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNE 451
               D + +  +L+A +  G      + F  M +   ISP +  +  +I    R G  +E
Sbjct: 462 GFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDE 521

Query: 452 AKDMFLQMQSLGVQPNLITWTTLI 475
           A+ +   M+++ ++P+   W +L+
Sbjct: 522 AEAL---MKNMEMKPDGAIWGSLL 542



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 20/239 (8%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I   S     +EA+ L  +M+  N +     +  +L  C Y   +  G+ IHA I K   
Sbjct: 337 IGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKK-- 394

Query: 111 FFA-RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
           F    N  + T L+  YAKC  ++ A ++F  ++ K++ SW A+I      G +  AL  
Sbjct: 395 FLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALEL 454

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA-----VHGYVL--KVGFDGCVFVASS 222
           F +M+++G  PD+     VL AC   G V  GR      V  Y +  K+   GC      
Sbjct: 455 FRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGC------ 508

Query: 223 LIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG---LNEEAIRVFYEMTLE 277
           +ID+ G+ G  +EA  +   M +  +   W S++     +G   L E A +  +E+  E
Sbjct: 509 MIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPE 567


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  355 bits (910), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 197/577 (34%), Positives = 309/577 (53%), Gaps = 59/577 (10%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L  A  VF+ +   N++ WN+M  G+  +     A++++  M   G+ P   +   +L +
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A L A  EG Q H   +  G ELD  + +S+I+ Y +   LEDA  VF R   RD+V++
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
             L+  Y   G                   I++A+ +F+ I ++DVV WN +++ Y + G
Sbjct: 133 TALVTGYASRGY------------------IESARNMFDEIPVKDVVSWNAMISGYVETG 174

Query: 413 RSGEASRLFYQMQLEGISPN----------------------IISW-------------N 437
              EA  LF +M    + P+                      + SW             N
Sbjct: 175 NYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVN 234

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           ++I  + + G+M  A  +FL +       ++I+W  LI G T  +   EA+L FQEML +
Sbjct: 235 ALIDFYSKCGEMETACGLFLGLS----YKDVISWNILIGGYTHLNLYKEALLLFQEMLRS 290

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH--DLCLPTPIVTSLVDMYAKCGNIH 555
           G  P+  T+   L AC  + ++  GR IH Y+ +    +   + + TSL+DMY+KCG+I 
Sbjct: 291 GESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIE 350

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
            A +VF+    K LP +NAMI G+AMHG A  A  +F  +++  I PD ITF  +L+ACS
Sbjct: 351 AAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACS 410

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           HAG+++ G  +F  M  ++++ P +EH+GC+++LL   G   EA  +I TM  +PD  I 
Sbjct: 411 HAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIW 470

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
            SLL  C      EL E  +++L ++EP+NPG+YV LSN YA +GRWNEV+++R ++ +K
Sbjct: 471 CSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDK 530

Query: 736 GLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           G++K PGCS I+I   +H F+  D+ HP+  EIY  L
Sbjct: 531 GMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 567



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 161/637 (25%), Positives = 275/637 (43%), Gaps = 110/637 (17%)

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
           + L  A  +F  ++  N+  W  +   +        AL  +V M   G+ P+++  P +L
Sbjct: 11  EGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLL 70

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-------- 241
           K+C  L     G  +HG+VLK+G++  ++V +SLI MY +   LE+A KVFD        
Sbjct: 71  KSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVV 130

Query: 242 ------------GMI--ARN---------VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
                       G I  ARN         VV+WN+MI GYV+ G  +EA+ +F EM    
Sbjct: 131 SYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTN 190

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V P   ++ +++SASA   +++ G+Q H+    +G   +  + +++I+FYSK G +E A 
Sbjct: 191 VRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETAC 250

Query: 339 VVFSRMVERDIVTWNLLIASY----------------VQSGQS--DVVVAS--------- 371
            +F  +  +D+++WN+LI  Y                ++SG+S  DV + S         
Sbjct: 251 GLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLG 310

Query: 372 ---------------------------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                                      S++DMY+KC  I+ A QVFNS++ + +  WN +
Sbjct: 311 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAM 370

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLG 463
           +  +A  GR+  A  +F +M+   I P+ I++  ++      G ++  + +F  M  +  
Sbjct: 371 IFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYK 430

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA-LSACTDVASLRNG 522
           + P L  +  +I  L  +    EA    +EM+ T        I C+ L AC    ++  G
Sbjct: 431 ITPKLEHYGCMIDLLGHSGLFKEA----EEMISTMTMEPDGVIWCSLLKACKMHGNVELG 486

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV---FDISPSKELP--------- 570
                 L + +   P   V  L ++YA  G  ++  R+    +    K++P         
Sbjct: 487 EKFAQNLFKIEPNNPGSYVL-LSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDS 545

Query: 571 VYNAMISGYAMHGLAVEALALFKN----LQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           V +  I G   H    E   + +     LQ+ G  PD+      +      G +    E 
Sbjct: 546 VVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEK 605

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
               F     KP  +    +V  L  C N  EA ++I
Sbjct: 606 LAIAFGLISTKPETKL--TIVKNLRVCRNCHEATKLI 640



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 202/425 (47%), Gaps = 49/425 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNG------------DFFARNEYVE------------- 119
           LL+ C   +    G QIH  +LK G              + +NE +E             
Sbjct: 69  LLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRD 128

Query: 120 ----TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
               T LV  YA    ++ A  +F  + VK+V SW A+I      G  ++AL  F EM +
Sbjct: 129 VVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMK 188

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
             V PD   +  V+ A    G +  GR VH ++   GF   + + ++LID Y KCG++E 
Sbjct: 189 TNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMET 248

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A  +F G+  ++V++WN +I GY    L +EA+ +F EM   G  P  V++ SIL A A+
Sbjct: 249 ACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAH 308

Query: 296 LDALDEGKQAHAV--AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           L A+D G+  H      + G+   + L +S+I+ YSK G +E A  VF+ M+ + +  WN
Sbjct: 309 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWN 368

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
            +I  +   G+     A++  D++++  + +         I  D + +  LL+A +  G 
Sbjct: 369 AMIFGFAMHGR-----ANAAFDIFSRMRKNE---------IKPDDITFVGLLSACSHAGM 414

Query: 414 SGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
                 +F  M     I+P +  +  +I     +G   EA++M   + ++ ++P+ + W 
Sbjct: 415 LDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEM---ISTMTMEPDGVIWC 471

Query: 473 TLISG 477
           +L+  
Sbjct: 472 SLLKA 476



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 163/330 (49%), Gaps = 14/330 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS   +    +EA++L  EM   N +        ++        +  G+Q+H+ I
Sbjct: 162 SWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWI 221

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             +G  F  N  +   L+ FY+KC  ++ A  LF  L  K+V SW  +IG    + L ++
Sbjct: 222 ADHG--FGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKE 279

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSL 223
           AL+ F EM   G SP++  + ++L AC  LG +  GR +H Y+ K   G      + +SL
Sbjct: 280 ALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSL 339

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           IDMY KCGD+E A +VF+ M+ +++ AWN+MI G+  +G    A  +F  M    ++P  
Sbjct: 340 IDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDD 399

Query: 284 VSVTSILSASANLDALDEGKQ-----AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           ++   +LSA ++   LD G+       H   +   +E    +    I+     GL ++AE
Sbjct: 400 ITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCM----IDLLGHSGLFKEAE 455

Query: 339 VVFSRM-VERDIVTWNLLIASYVQSGQSDV 367
            + S M +E D V W  L+ +    G  ++
Sbjct: 456 EMISTMTMEPDGVIWCSLLKACKMHGNVEL 485


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  355 bits (910), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 224/787 (28%), Positives = 382/787 (48%), Gaps = 102/787 (12%)

Query: 86   LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
            L  C   RD   G  +H+ + + G  F  +      L+  Y KC   + A  +F  +  +
Sbjct: 240  LGACTSLRD---GTWLHSLLHEAGLGF--DPLAGNALINMYGKCGDWEGAYGVFKAMASR 294

Query: 146  ---NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG- 201
               ++ SW A+I  +   G    A+  F  ++ +G+ P++  L  +L A  A G V FG 
Sbjct: 295  QELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASG-VDFGA 353

Query: 202  -RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYV 259
             R  HG + + G+   V V +++I MY KCG    A  VF  +  + +V++WN+M+    
Sbjct: 354  ARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASE 413

Query: 260  QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME-LDN 318
                  + +  F+ M L G++P +VS  +IL+A +N +ALD G++ H++ +    + +++
Sbjct: 414  DRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVES 473

Query: 319  VLGSSIINFYSKVGLLEDAEVVFSRMV--ERDIVTWNLLIASYVQ--------------- 361
             + + +++ Y K G + +AE+VF  M    R +VTWN+++ +Y Q               
Sbjct: 474  SVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEML 533

Query: 362  ---------------------------------SGQSDVVVASSIVDMYAKCERIDNAKQ 388
                                             SG     + ++++ M+ +C  ++ A+ 
Sbjct: 534  QGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARS 593

Query: 389  VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW--------NSVI 440
            VF+ +   DVV W  +++A A+     E   LF +MQLEG+ P+  +         +S  
Sbjct: 594  VFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTT 653

Query: 441  LGF----------------------LRN-----GQMNEAKDMFLQMQSLGVQPNLITWTT 473
            LG                       L N     G   EA   F  M++     +L++W  
Sbjct: 654  LGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKA----RDLVSWNI 709

Query: 474  LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
            + +   Q     EA+L F+ M   G+KP   T +  L+     A + +G+  HG      
Sbjct: 710  MSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESG 769

Query: 534  LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
            L     + T LV +YAKCG + +A  +F  +    + + NA+I   A HG + EA+ +F 
Sbjct: 770  LDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFW 829

Query: 594  NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
             +QQ+G+ PD  T  +I++AC HAG+V EG   F+ M     + P++EH+ C V+LL R 
Sbjct: 830  KMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRA 889

Query: 654  GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
            G L+ A ++I  MP + +  +  SLL TC    + EL E  ++ +L+L+P N   +V LS
Sbjct: 890  GQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLS 949

Query: 714  NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
            N Y A+G+W +    R  + ++ ++  PG SW++IG+++H FVA DRSHP+T+EIY  L 
Sbjct: 950  NIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLD 1009

Query: 774  LLGMHVR 780
             L + +R
Sbjct: 1010 KLELLMR 1016



 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 194/724 (26%), Positives = 314/724 (43%), Gaps = 140/724 (19%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           Q+ SLS   ++  A DL             + Y  LLQ CV   D+  G++ H  I   G
Sbjct: 9   QLCSLSGAVRVDRAADL-------------QEYTALLQSCVDSNDLAKGKRAHELIANAG 55

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
               ++ ++   L+  Y +C +L+ A  +F ++  +NV SW A+I  N + G   +A   
Sbjct: 56  --LEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFAL 113

Query: 170 FVEM-QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD----GCVFVASSLI 224
           F  M  E   +P+++ L  +L AC     +  GR++H  + ++G +        V +++I
Sbjct: 114 FRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMI 173

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ-NGLNEEAIRVFYEMTLEGVEPTR 283
           +MY KCG  E+A  VF  +  ++VV+W +M   Y Q      +A+R+F EM L+ + P  
Sbjct: 174 NMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNV 233

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           ++  + L A  +   L +G   H++    G+  D + G+++IN Y K G  E A  VF  
Sbjct: 234 ITFITALGACTS---LRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKA 290

Query: 344 MVER---DIVTWNLLIASYVQSGQ------------------------------------ 364
           M  R   D+V+WN +I++ V++G+                                    
Sbjct: 291 MASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVD 350

Query: 365 -----------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILR-DVVLWNTLLA 406
                             DVVV ++I+ MYAKC     A  VF  I  + DV+ WNT+L 
Sbjct: 351 FGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLG 410

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISW--------NSVILGFLRN------------ 446
           A  D    G+    F+ M L GI PN +S+        NS  L F R             
Sbjct: 411 ASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDY 470

Query: 447 ----------------GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
                           G + EA+ +F +M       +L+TW  ++    QN    EA   
Sbjct: 471 VESSVATMLVSMYGKCGSIAEAELVFKEMPL--PSRSLVTWNVMLGAYAQNDRSKEAFGA 528

Query: 491 FQEMLETGIKPSTTTITCALSAC---TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
             EML+ G+ P   + T  LS+C    +   LR      GY      CL     T+L+ M
Sbjct: 529 LMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGY---RSACLE----TALISM 581

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           + +C  + QA+ VFD     ++  + AM+S  A +    E   LF+ +Q +G+ PD  T 
Sbjct: 582 HGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTL 641

Query: 608 TNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
              L+ C  +  +  G  +      +G+ +D  V+ ++      +N+ S CG+  EAL  
Sbjct: 642 ATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENAL------LNMYSNCGDWREALSF 695

Query: 663 ILTM 666
             TM
Sbjct: 696 FETM 699



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 226/478 (47%), Gaps = 32/478 (6%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+  H  +   G +  +F+ + LI+MY +CG LEEA  +F  M  RNVV+W ++I    Q
Sbjct: 44  GKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQ 103

Query: 261 NGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN- 318
           +G    A  +F  M LE    P   ++ ++L+A AN   L  G+  HA+    G+E ++ 
Sbjct: 104 SGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLEREST 163

Query: 319 ---VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVD 375
              ++G+++IN Y+K G  EDA  VF  + E+D+V+W  +  +Y Q  +           
Sbjct: 164 TATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERR----------- 212

Query: 376 MYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
            Y       +A ++F  ++L+    +V+ + T L A   L        L ++  L G  P
Sbjct: 213 FYP------DALRIFREMLLQPLAPNVITFITALGACTSLRDGTWLHSLLHEAGL-GFDP 265

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
             ++ N++I  + + G    A  +F  M S   + +L++W  +IS   +     +A+  F
Sbjct: 266 --LAGNALINMYGKCGDWEGAYGVFKAMASRQ-ELDLVSWNAMISASVEAGRHGDAMAIF 322

Query: 492 QEMLETGIKPSTTTITCALSA-CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           + +   G++P++ T+   L+A           R  HG +          +  +++ MYAK
Sbjct: 323 RRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAK 382

Query: 551 CGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           CG    A  VF  I    ++  +N M+          + +  F ++   GIDP+ ++F  
Sbjct: 383 CGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIA 442

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
           ILNACS++  ++ G ++   + +  +          +V++  +CG++ EA  V   MP
Sbjct: 443 ILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMP 500


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  355 bits (910), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 204/607 (33%), Positives = 321/607 (52%), Gaps = 54/607 (8%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLID---MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
           R +H  ++K+G     +  S LI+   +      L  A  VF  +   N++ WN+M  G+
Sbjct: 50  RIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGH 109

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             +     A++++  M   G+ P   +   +L + A   A  EG+Q H   +  G +LD 
Sbjct: 110 ALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDL 169

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
            + +S+I+ Y + G LEDA  VF +   RD+V++  LI  Y   G               
Sbjct: 170 YVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY-------------- 215

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
               I+NA+++F+ I ++DVV WN +++ YA+ G   EA  LF  M    + P+  +  +
Sbjct: 216 ----IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNL------------------------------ 468
           V+    ++G +   + + L +   G   NL                              
Sbjct: 272 VVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKD 331

Query: 469 -ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
            I+W TLI G T  +   EA+L FQEML +G  P+  T+   L AC  + ++  GR IH 
Sbjct: 332 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 391

Query: 528 YLIRH--DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           Y+ +    +   + + TSL+DMYAKCG+I  A +VF+    K L  +NAMI G+AMHG A
Sbjct: 392 YIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRA 451

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
             +  LF  +++ GI PD ITF  +L+ACSH+G+++ G  +F  M  D+++ P +EH+GC
Sbjct: 452 DASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGC 511

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           +++LL   G   EA  +I  M  +PD  I  SLL  C      EL E  +E+L+++EP+N
Sbjct: 512 MIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPEN 571

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
           PG+YV LSN YA++GRWNEV++ R ++ +KG++K PGCS I+I   +H F+  D+ HP+ 
Sbjct: 572 PGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 631

Query: 766 EEIYATL 772
            EIY  L
Sbjct: 632 REIYGML 638



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 222/480 (46%), Gaps = 94/480 (19%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVF---YAKCDALDVASRLFCR 141
           LL  C   + + + + IHA+++K G       Y  +KL+ F       + L  A  +F  
Sbjct: 39  LLHNC---KTLQSLRIIHAQMIKIG--LHNTNYALSKLIEFCILSPHFEGLPYAISVFKT 93

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           ++  N+  W  +   +        AL  +V M   G+ P+++  P VLK+C        G
Sbjct: 94  IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEG 153

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-------------------- 241
           + +HG+VLK+G D  ++V +SLI MY + G LE+A KVFD                    
Sbjct: 154 QQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASR 213

Query: 242 GMI-----------ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G I            ++VV+WN+MI GY + G  +EA+ +F +M    V P   ++ +++
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA A   +++ G+Q H     +G   +  + +++I+ YSK G LE A  +F R+  +D++
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333

Query: 351 TWNLLIASY----------------VQSGQS--DVVVAS--------------------- 371
           +WN LI  Y                ++SG++  DV + S                     
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393

Query: 372 ---------------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
                          S++DMYAKC  I+ A QVFNSI+ + +  WN ++  +A  GR+  
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLI 475
           +  LF +M+  GI P+ I++  ++     +G ++  + +F  M Q   + P L  +  +I
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513



 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 177/326 (54%), Gaps = 20/326 (6%)

Query: 71  KCRNFQIGPEIYGELLQ-GCVYKRDMYTGQQIHARILKNGDF------FARNEYVE---- 119
           K + F+ G +I+G +L+ GC    D+Y    + +  ++NG        F ++ + +    
Sbjct: 146 KSKAFKEGQQIHGHVLKLGC--DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           T L+  YA    ++ A +LF  + VK+V SW A+I      G  ++AL  F +M +  V 
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           PD   +  V+ AC   G +  GR VH ++   GF   + + ++LID+Y KCG+LE A  +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F+ +  ++V++WN++I GY    L +EA+ +F EM   G  P  V++ SIL A A+L A+
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383

Query: 300 DEGKQAHAV--AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
           D G+  H      + G+   + L +S+I+ Y+K G +E A  VF+ ++ + + +WN +I 
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERI 383
            +   G++D     +  D++++  +I
Sbjct: 444 GFAMHGRAD-----ASFDLFSRMRKI 464



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 4/261 (1%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++    +EA++L  +M   N +        ++  C     +  G+Q+H  I
Sbjct: 233 SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWI 292

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             +G  F  N  +   L+  Y+KC  L+ A  LF RL  K+V SW  +IG    + L ++
Sbjct: 293 DDHG--FGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKE 350

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSL 223
           AL+ F EM   G +P++  + ++L AC  LG +  GR +H Y+ K   G      + +SL
Sbjct: 351 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSL 410

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           IDMY KCGD+E A +VF+ ++ +++ +WN+MI G+  +G  + +  +F  M   G++P  
Sbjct: 411 IDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDD 470

Query: 284 VSVTSILSASANLDALDEGKQ 304
           ++   +LSA ++   LD G+ 
Sbjct: 471 ITFVGLLSACSHSGMLDLGRH 491


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 198/582 (34%), Positives = 322/582 (55%), Gaps = 51/582 (8%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L+  Y  CGDL+E R+VFD M  +NV  WN M+  Y + G  +E+I +F  M  +G+E  
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
           R       SAS   D L               + D +  +S+I+ Y   GL E    ++ 
Sbjct: 62  RSE-----SASELFDKL--------------CDRDVISWNSMISGYVSNGLTERGLGIYK 102

Query: 343 RM----VERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCE 381
           +M    ++ D+ T   ++    +SG                 +  +  +++++DMY+KC 
Sbjct: 103 QMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCG 162

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +D A +VF  +  R+VV W +++A Y   G S  A  L  QM+ EG+  ++++  S++ 
Sbjct: 163 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILH 222

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI-- 499
              R+G ++  KD+   +++  +  NL     L+    +      A   F  M+   I  
Sbjct: 223 ACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIIS 282

Query: 500 --------KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
                   KP + T+ C L AC  +++L  G+ IHGY++R+       +  +LVD+Y KC
Sbjct: 283 WNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 342

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G +  A+ +FD+ PSK+L  +  MI+GY MHG   EA+A F  ++  GI+PD ++F +IL
Sbjct: 343 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 402

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
            ACSH+GL+ +G   F  M +D  ++P +EH+ C+V+LLSR GNL +A + I T+P  PD
Sbjct: 403 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPD 462

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
           A I G+LL  C   ++ ELAE ++E + +LEP+N G YV L+N YA + +W EV ++R+ 
Sbjct: 463 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREK 522

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDR-SHPKTEEIYATL 772
           + +KGLRKNPGCSWI+I   +++FV+ +  SHP +++I + L
Sbjct: 523 IGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLL 564



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 213/411 (51%), Gaps = 35/411 (8%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           AS LF +L  ++V SW ++I      GL+E+ L  + +M   G+  D   + +VL  C  
Sbjct: 66  ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAK 125

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
            G +  G+AVH   +K  F+  +  +++L+DMY KCGDL+ A +VF+ M  RNVV+W SM
Sbjct: 126 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 185

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           I GY ++G ++ AI +  +M  EGV+   V++TSIL A A   +LD GK  H     N M
Sbjct: 186 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 245

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA----------------- 357
             +  + +++++ Y+K G +E A  VFS MV +DI++WN ++                  
Sbjct: 246 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACA 305

Query: 358 --SYVQSGQ------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
             S ++ G+            SD  VA+++VD+Y KC  +  A+ +F+ I  +D+V W  
Sbjct: 306 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 365

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-L 462
           ++A Y   G   EA   F +M+  GI P+ +S+ S++     +G + +    F  M++  
Sbjct: 366 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDF 425

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            ++P L  +  ++  L++    ++A  F + +    I P  T     L  C
Sbjct: 426 NIEPKLEHYACMVDLLSRTGNLSKAYKFIETL---PIAPDATIWGALLCGC 473



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 195/394 (49%), Gaps = 41/394 (10%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L GC     +  G+ +H+  +K+   F R       L+  Y+KC  LD A R+F ++  
Sbjct: 119 VLVGCAKSGTLSLGKAVHSLAIKSS--FERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 176

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +NV SW ++I    R G S+ A+I   +M+++GV  D   + ++L AC   G +  G+ V
Sbjct: 177 RNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 236

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H Y+        +FV ++L+DMY KCG +E A  VF  M+ +++++WN+M+         
Sbjct: 237 HDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV--------- 287

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
                         ++P   ++  IL A A+L AL+ GK+ H   + NG   D  + +++
Sbjct: 288 ------------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANAL 335

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
           ++ Y K G+L  A ++F  +  +D+V+W ++IA Y   G  +  +A+             
Sbjct: 336 VDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIAT------------- 382

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGF 443
              ++ ++ I  D V + ++L A +  G   +  R FY M+ +  I P +  +  ++   
Sbjct: 383 -FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLL 441

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            R G +++A   +  +++L + P+   W  L+ G
Sbjct: 442 SRTGNLSKA---YKFIETLPIAPDATIWGALLCG 472


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 207/631 (32%), Positives = 343/631 (54%), Gaps = 32/631 (5%)

Query: 161 GLSEKALIGFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
           GL ++A+  ++ M    G+ PDNF  P +L AC  +     G  VHG V+K+G    +FV
Sbjct: 100 GLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFV 159

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           A+SLI  Y  CG ++  RKVFD M+ RNVV+W S+I GY    + +EA+ +F+EM   GV
Sbjct: 160 ANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGV 219

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           EP  V++   +SA A L  L+ GK+   +    G++ + ++ +++++ Y K G +     
Sbjct: 220 EPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVRE 279

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ----------- 388
           +F    ++++V +N ++++YVQ G +  V+   + +M  K +R D               
Sbjct: 280 IFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVV-LDEMLQKGQRPDKVTMLSTIAACAQLG 338

Query: 389 -----------VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
                      VF + + R   + N ++  Y   G+   A ++F  M     +  +++WN
Sbjct: 339 DLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMS----NKTVVTWN 394

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           S+I G +R+G++  A  +F +M     + NL++W T+I  + Q S   EAI   +EM   
Sbjct: 395 SLIAGLVRDGELELALRIFGEMP----ESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQ 450

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           GIK    T+    SAC  + +L   + I+ Y+ ++D+ +   + T+LVDM+++CG+   A
Sbjct: 451 GIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNA 510

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
            RVF+    +++  + A I   A+ G A  A+ LF  + ++ +  D   F  +L A SH 
Sbjct: 511 MRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHG 570

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           G V++G +LF  M   H V P + H+GC+V+LL R G L+EA  ++ +MP  P+  I GS
Sbjct: 571 GYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGS 630

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
            L+ C K    E A Y  E + QL P+  G +V LSN YA++G+WN+V++VR  MKEKG 
Sbjct: 631 FLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGF 690

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           +K  G S I++   +  F + D SH +  +I
Sbjct: 691 QKVAGSSSIEVHGLIREFTSGDESHTENAQI 721



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 146/542 (26%), Positives = 263/542 (48%), Gaps = 46/542 (8%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL  C        G Q+H  ++K G    ++ +V   L+ FYA C  +D+  ++F  +  
Sbjct: 128 LLSACSKIMAFSEGVQVHGVVVKMG--LVKDLFVANSLIHFYAACGKVDLGRKVFDEMLE 185

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +NV SW ++I     V ++++A+  F EM E GV P+   +   + AC  L  +  G+ V
Sbjct: 186 RNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKV 245

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
              + ++G      V ++L+DMY KCGD+   R++FD    +N+V +N+++  YVQ+GL 
Sbjct: 246 CNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLA 305

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME-LDNVLGSS 323
            E + V  EM  +G  P +V++ S ++A A L  L  GK +HA    NG+E LDN+  ++
Sbjct: 306 GEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNI-SNA 364

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
           II+ Y K G  E A  VF  M  + +VTWN LIA  V+ G+ ++                
Sbjct: 365 IIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELEL---------------- 408

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV--IL 441
             A ++F  +   ++V WNT++ A        EA  L  +MQ +GI  + ++   +    
Sbjct: 409 --ALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASAC 466

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN--EAILFFQEMLETGI 499
           G+L  G ++ AK ++  ++   +  ++   T L+   ++  CG+   A+  F+ M     
Sbjct: 467 GYL--GALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSR--CGDPLNAMRVFENME---- 518

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           K   +  T A+       + +    +   +++ D+     +  +L+  ++  G + Q ++
Sbjct: 519 KRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQ 578

Query: 560 VF-------DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           +F        +SP  ++  Y  M+      GL  EA  L K++    I P+ + + + L 
Sbjct: 579 LFWAMEKIHGVSP--QIVHYGCMVDLLGRAGLLEEAFDLMKSMP---IKPNDVIWGSFLA 633

Query: 613 AC 614
           AC
Sbjct: 634 AC 635



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 142/301 (47%), Gaps = 9/301 (2%)

Query: 423 QMQLEGISPNIISWNSVILGFLRNG---QMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           Q+    +   + + N +I   ++ G    +N A + F + +  G + +L T  TLI G  
Sbjct: 40  QLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDE--GTKCSLYTCNTLIRGYA 97

Query: 480 QNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
            +    EAI  +  M +  GI P   T    LSAC+ + +   G  +HG +++  L    
Sbjct: 98  ASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDL 157

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            +  SL+  YA CG +   ++VFD    + +  + ++I+GY++  +A EA+ LF  + + 
Sbjct: 158 FVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEV 217

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           G++P+ +T    ++AC+    +  G ++   + ++  VK +      ++++  +CG++  
Sbjct: 218 GVEPNPVTMVCAISACAKLKDLELGKKV-CNLMTELGVKSNTLVVNALLDMYMKCGDM-Y 275

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           A+R I     D +  +  +++S  V+         + + +LQ +   P     LS   A 
Sbjct: 276 AVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQ-KGQRPDKVTMLSTIAAC 334

Query: 719 S 719
           +
Sbjct: 335 A 335



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 18/224 (8%)

Query: 41  ESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQ 100
           ES   S+   I ++ +     EA+DLL EM+ +  +        +   C Y   +   + 
Sbjct: 418 ESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKW 477

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKC-DALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           I+  I KN      +  + T LV  +++C D L+ A R+F  +  ++V +W A I +   
Sbjct: 478 IYTYIEKNDIHI--DMQLGTALVDMFSRCGDPLN-AMRVFENMEKRDVSAWTAAIRVKAV 534

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR-------AVHGYVLKVG 212
            G ++ A+  F EM +  V  D+FV   +L A    G+V  GR        +HG   ++ 
Sbjct: 535 EGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIV 594

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
             GC      ++D+ G+ G LEEA  +   M I  N V W S +
Sbjct: 595 HYGC------MVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFL 632


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  354 bits (909), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 199/651 (30%), Positives = 343/651 (52%), Gaps = 94/651 (14%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VF+ + ++  YGKCG +  AR  FD +  +N  +W SM+  Y QNG    A+ ++  M L
Sbjct: 58  VFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDL 117

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHA-VAVINGMELDNVLGSSIINFYSKVGLLE 335
           +   P  V  T++L A A+++AL+EGK  H+ ++   G++LD +L +S++  Y+K G LE
Sbjct: 118 Q---PNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLE 174

Query: 336 DAEVVFSRMV-ERDIVTWNLLIASYVQSG------------------------------- 363
           DA+ +F RM   R + +WN +IA+Y QSG                               
Sbjct: 175 DAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNL 234

Query: 364 ------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                             + D+ + ++++ MYA+C+ +D+A ++F  +  RDVV W+ ++
Sbjct: 235 GLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMI 294

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL-----GFLRNGQ------------ 448
           AA+A+     EA   + +MQLEG+ PN  ++ SV+L     G LR G+            
Sbjct: 295 AAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYK 354

Query: 449 ------------------MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
                             ++EA+ +F Q+++     +   WT LI G ++       +  
Sbjct: 355 ITLVNGTALVDLYTSYGSLDEARSLFDQIEN----RDEGLWTVLIGGYSKQGHRTGVLEL 410

Query: 491 FQEMLETGIKPSTTTI-TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
           ++EM  T   P+T  I +C +SAC  + +  + R  H  +    +     + TSLV+MY+
Sbjct: 411 YREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYS 470

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           + GN+  A++VFD   S++   +  +I+GYA HG    AL L+K ++ +G +P  +TF  
Sbjct: 471 RWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMV 530

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669
           +L ACSHAGL  +G +LF+ + SD+ + P++ H+ C+++LLSR G L +A  +I  MP +
Sbjct: 531 VLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVE 590

Query: 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR 729
           P+     SLL       + + A + +  + +L+P +P +YV LSN +A +G    ++ VR
Sbjct: 591 PNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVR 650

Query: 730 DIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           + M  +G++K  G SWI++ +++H F   D SHP+ +EI+A L  L   ++
Sbjct: 651 NTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIK 701


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  354 bits (909), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 212/649 (32%), Positives = 348/649 (53%), Gaps = 57/649 (8%)

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDG 215
           C++G  E A+      Q+  +    +   +VL+ C  L  +  G+ VH  +    VG D 
Sbjct: 77  CQLGDLENAMELVCMCQKSELETKTY--GSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDE 134

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            + +   L+  Y  CGDL+E R+VFD M  +NV  WN M+  Y + G  +E+I +F  M 
Sbjct: 135 ALGL--KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMV 192

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            +G+E  R       SAS   D L               + D +  +S+I+ Y   GL E
Sbjct: 193 EKGIEGKRPE-----SASELFDKL--------------CDRDVISWNSMISGYVSNGLTE 233

Query: 336 DAEVVFSRM----VERDIVTWNLLIASYVQSG-----------------QSDVVVASSIV 374
               ++ +M    ++ D+ T   ++     SG                 +  +  +++++
Sbjct: 234 RGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLL 293

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
           DMY+KC  +D A +VF  +  R+VV W +++A Y   G S  A  L  QM+ EG+  +++
Sbjct: 294 DMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVV 353

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           +  S++    R+G ++  KD+   +++  +  NL     L+    +      A   F  M
Sbjct: 354 AITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTM 413

Query: 495 LETGI----------KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
           +   I          KP + T+ C L AC  +++L  G+ IHGY++R+       +  +L
Sbjct: 414 VVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANAL 473

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           VD+Y KCG +  A+ +FD+ PSK+L  +  MI+GY MHG   EA+A F  ++  GI+PD 
Sbjct: 474 VDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDE 533

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
           ++F +IL ACSH+GL+ +G   F  M +D  ++P +EH+ C+V+LLSR GNL +A + I 
Sbjct: 534 VSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIE 593

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
           T+P  PDA I G+LL  C   ++ ELAE ++E + +LEP+N G YV L+N YA + +  E
Sbjct: 594 TLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREE 653

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR-SHPKTEEIYATL 772
           V ++R+ + +KGLRKNPGCSWI+I   +++FV+ +  SHP +++I + L
Sbjct: 654 VKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLL 702



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/525 (27%), Positives = 244/525 (46%), Gaps = 88/525 (16%)

Query: 72  CRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131
           C+  ++  + YG +LQ C   + +  G+++H+ I  N      +E +  KLV FYA C  
Sbjct: 92  CQKSELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNS--VGVDEALGLKLVSFYATCGD 149

Query: 132 LDVASRLFCRLRVKNVF------------------------------------------- 148
           L    R+F  +  KNV+                                           
Sbjct: 150 LKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFD 209

Query: 149 --------SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
                   SW ++I      GL+E+ L  + +M   G+  D   + +VL  C   G +  
Sbjct: 210 KLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSL 269

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+AVH   +K  F+  +  +++L+DMY KCGDL+ A +VF+ M  RNVV+W SMI GY +
Sbjct: 270 GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTR 329

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +G ++ AI +  +M  EGV+   V++TSIL A A   +LD GK  H     N M  +  +
Sbjct: 330 DGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFV 389

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA-------------------SYVQ 361
            +++++ Y+K G +E A  VFS MV +DI++WN ++                    S ++
Sbjct: 390 CNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALE 449

Query: 362 SGQ------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
            G+            SD  VA+++VD+Y KC  +  A+ +F+ I  +D+V W  ++A Y 
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 509

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNL 468
             G   EA   F +M+  GI P+ +S+ S++     +G + +    F  M++   ++P L
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
             +  ++  L++    ++A  F + +    I P  T     L  C
Sbjct: 570 EHYACMVDLLSRTGNLSKAYKFIETL---PIAPDATIWGALLCGC 611


>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
          Length = 1073

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 224/800 (28%), Positives = 392/800 (49%), Gaps = 96/800 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  +   + +EA DL  +M+    +     +  +L  C     +  G+QIH+RI
Sbjct: 168 SWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRI 227

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K G  +  +  V T L+  Y KC +L++A ++F  +R +NV SW A+I    + G S +
Sbjct: 228 AKAG--YESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSRE 285

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           AL  F ++   G+ P+     ++L AC     +G G  +H Y+ + G +  V V ++LI 
Sbjct: 286 ALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALIS 345

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY +CG L  AR+VFD + + N   WN+MI GY + GL EEA R+F  M  +G +P + +
Sbjct: 346 MYSRCGSLANARQVFDNLRSLNRTTWNAMIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFT 404

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
             S+L+  A+   LD GK+ H+     G + D  + +++I+ Y+K G  E+A  VF++M 
Sbjct: 405 YASLLAICADRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMP 464

Query: 346 ERDIVTWNLLIA-------------SYVQSGQSDVV------------------------ 368
           ER++++WN  I+             ++ Q  + DV                         
Sbjct: 465 ERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRY 524

Query: 369 ---------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                          VA++++ MY +C  + +A++VF  I  RD+  WN ++AA    G 
Sbjct: 525 IHGKINQWGMLSNNHVANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGA 584

Query: 414 SGEASRLFYQMQLEG-----------------------------------ISPNIISWNS 438
           +G A  LF + + EG                                      +I    +
Sbjct: 585 NGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTT 644

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I  + + G + +A+++F  +Q    + +++ W  +++    +  G +A+  FQ+M   G
Sbjct: 645 LIKMYSKCGSLRDAENVFSTVQ----EKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEG 700

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           + P ++T + AL+AC  + ++ +G+ IH  L    +   T +  SL++MY++CG +  AK
Sbjct: 701 VNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAK 760

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           +VF+   S+++  +NA+I+GY  +G    AL  ++ + +  I P+  TFT+IL++ +  G
Sbjct: 761 QVFEKMLSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQLG 820

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
              +  +    +  +  ++PS +H+  +V  L R G L EA   I  +  +  A +  SL
Sbjct: 821 EEEQAFDFLESIKKEWNMEPSEQHYAYMVAALGRAGLLKEAEEFIEEISAESAALMWESL 880

Query: 679 LSTCVKSNETELAEYISEHLLQLEPD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           L  C      ELAE   EHLL  +   +P     L + YAA+GRW +VS ++  M+E GL
Sbjct: 881 LVACRIHLNVELAETAVEHLLDAKAQASPAVCEQLMSIYAAAGRWEDVSVLKTTMQEAGL 940

Query: 738 RKNPGCSWIQIGEELHVFVA 757
                C+ I++  E H F+A
Sbjct: 941 VALKSCT-IEVNSEFHNFIA 959



 Score =  318 bits (815), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 222/796 (27%), Positives = 386/796 (48%), Gaps = 119/796 (14%)

Query: 32  KLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVY 91
           ++RES+N+++   K     +    + K I+ AV LL +   R  Q     Y   LQ CV 
Sbjct: 60  RIRESNNTWDEGPKI----VRDTREGKSIKGAVQLLGK---RGVQANLNFYARRLQQCVL 112

Query: 92  KRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWA 151
            + +  G+++H  +      F  + Y+   L+  Y+KC +++ A+ +F  +  K+V SW 
Sbjct: 113 AKSLAEGKKVHDHM--RSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWN 170

Query: 152 AIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV 211
           A+I      G  ++A   F +MQ +G+ P+     ++L AC +   + FG  +H  + K 
Sbjct: 171 AMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKA 230

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
           G++  V V+++LI+MY KCG LE ARKVF+ M  RNVV+W +MI GYVQ+G + EA+ +F
Sbjct: 231 GYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALF 290

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
            ++   G++P +VS  SIL A  N + L EG + HA     G+E + ++G+++I+ YS+ 
Sbjct: 291 RKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRC 350

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASY---------------VQSG------------- 363
           G L +A  VF  +   +  TWN +IA Y                Q G             
Sbjct: 351 GSLANARQVFDNLRSLNRTTWNAMIAGYGEGLMEEAFRLFRAMEQKGFQPDKFTYASLLA 410

Query: 364 -----------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
                                  Q+D+ VA++++ MYAKC   + A++VFN +  R+V+ 
Sbjct: 411 ICADRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVIS 470

Query: 401 WNTLLA--AYADLGRSGEASRLFYQMQLEGISPNIISW---------------------- 436
           WN  ++     DLG+  EA + F QM+ + ++P+ I++                      
Sbjct: 471 WNAFISCCCRHDLGK--EAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGK 528

Query: 437 -------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
                        N++I  + R G + +A+++F +++    + +L +W  +I+   Q+  
Sbjct: 529 INQWGMLSNNHVANALISMYGRCGNLADAREVFYRIR----RRDLGSWNAMIAANVQHGA 584

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
              A   F++    G K    T    L A  ++  L  GR IHG + +        ++T+
Sbjct: 585 NGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTT 644

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+ MY+KCG++  A+ VF     K++  +NAM++ YA      +AL LF+ +Q +G++PD
Sbjct: 645 LIKMYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPD 704

Query: 604 SITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           S T++  LNAC+    V  G ++       GM +D +V  S+      + + SRCG L  
Sbjct: 705 SSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSL------IEMYSRCGCLCS 758

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELA-EYISEHLLQLEPDNPGNYVALSNAYA 717
           A +V   M    D +   +L++   ++ +  +A EY    L      N   + ++ ++YA
Sbjct: 759 AKQVFEKM-LSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYA 817

Query: 718 ASGRWNEVSQVRDIMK 733
             G   E  Q  D ++
Sbjct: 818 QLG---EEEQAFDFLE 830



 Score =  228 bits (582), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 148/495 (29%), Positives = 258/495 (52%), Gaps = 28/495 (5%)

Query: 30  LTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGC 89
           L   R+  ++  SL ++ ++ + +   E  + EA  L   M+ + FQ     Y  LL  C
Sbjct: 353 LANARQVFDNLRSLNRTTWNAMIAGYGEGLMEEAFRLFRAMEQKGFQPDKFTYASLLAIC 412

Query: 90  VYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFS 149
             + D+  G+++H++I   G  +  +  V T L+  YAKC + + A ++F ++  +NV S
Sbjct: 413 ADRADLDRGKELHSQIASTG--WQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVIS 470

Query: 150 WAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL 209
           W A I   CR  L ++A   F +M+ D V+PD+     +L +C +   +  GR +HG + 
Sbjct: 471 WNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKIN 530

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR 269
           + G      VA++LI MYG+CG+L +AR+VF  +  R++ +WN+MI   VQ+G N  A  
Sbjct: 531 QWGMLSNNHVANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFD 590

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329
           +F +   EG +  + +  ++L A ANL+ LD G+  H +    G   D  + +++I  YS
Sbjct: 591 LFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYS 650

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS--GQS---------------DVVVASS 372
           K G L DAE VFS + E+D+V WN ++A+Y  S  GQ                D    S+
Sbjct: 651 KCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYST 710

Query: 373 IVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
            ++  A+   +++ K++   +    +  D  + N+L+  Y+  G    A ++F +M    
Sbjct: 711 ALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAKQVFEKM---- 766

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
           +S +I SWN++I G+ +NGQ N A + +  M    + PN  T+T+++S   Q     +A 
Sbjct: 767 LSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQLGEEEQAF 826

Query: 489 LFFQEM-LETGIKPS 502
            F + +  E  ++PS
Sbjct: 827 DFLESIKKEWNMEPS 841


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 218/681 (32%), Positives = 354/681 (51%), Gaps = 55/681 (8%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           +V  Y     +  A  LF ++  +N+ +W  +I    R+    K    F  M  +G SPD
Sbjct: 163 MVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPD 222

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK-CGDLEEARKVF 240
                +VL A   L  +G    +   VLK GF+  V + +S++++Y +    L+ A K F
Sbjct: 223 QSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFF 282

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           DGM+ RN   W++MI      G  + AI V+      G +P    V SI S +A L  L 
Sbjct: 283 DGMVERNEYTWSTMIAALSHGGRIDAAIAVY------GRDP----VKSIPSQTALLTGLA 332

Query: 301 EGKQAHAVAVINGMELDNVLGS--SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
              +     ++     D ++ S  ++I  Y + G++++A+ +F RM  R+ ++W  +IA 
Sbjct: 333 RCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAG 392

Query: 359 YVQSGQSDVVV--------------ASSIVDMYAKCERI---DNAKQV----------FN 391
           Y Q+G+S+  +               SS+   +  C  I   +  +QV          FN
Sbjct: 393 YAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFN 452

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
           S +       N L++ Y          ++F +M+++    + +SWNS I   ++N  + +
Sbjct: 453 SYVC------NALISMYGKCRNMEYVRQVFNRMRVK----DTVSWNSFIAALVQNNMLED 502

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A+ +F  M S     ++++WTT+IS   Q   G+EA+ FF+ ML    KP++  +T  LS
Sbjct: 503 ARHIFDNMLS----RDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLS 558

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
            C  + S + G+ IH   I+H +     +  +L+ MY KCG    + +VFD    +++  
Sbjct: 559 VCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEERDIFT 617

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           +N  I+G A HGL  EA+ ++++++  G+ P+ +TF  +LNACSHAGLV+EG + F  M 
Sbjct: 618 WNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMS 677

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
            D+ + P +EH+ C+V+LL R G++  A + I  MP +PD  I  +LL  C      E+ 
Sbjct: 678 RDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIG 737

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
              +E L   EP N GNYV LSN Y++ G W EV+++R IMK++G+ K PGCSW+QI  +
Sbjct: 738 RRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNK 797

Query: 752 LHVFVACDRSHPKTEEIYATL 772
           +H FV  D+ H K EEI  TL
Sbjct: 798 VHSFVTGDKQHEKIEEIDYTL 818



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 148/578 (25%), Positives = 258/578 (44%), Gaps = 100/578 (17%)

Query: 127 AKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
           A+   L  A  +F  +  +++ +W ++I   C  G+ E A I F     D +S  N    
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILF-----DAISGGN---- 94

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
                                         V  A+ L+  Y + G + +AR+VFDGM  R
Sbjct: 95  ------------------------------VRTATILLSGYARLGRVLDARRVFDGMPER 124

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           N VAWN+M+  YVQNG    A R+F  M    V      VT    +   +DA +  KQ  
Sbjct: 125 NTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMP 184

Query: 307 AVAVINGMEL--------DNVLGSSIINFYSKVGLLED----AEVVFSRMVERDIVTWNL 354
              ++    +         +  G  I       G   D    A V+ +    +D+    +
Sbjct: 185 QRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEV 244

Query: 355 LIASYVQSG-QSDVVVASSIVDMYAK-CERIDNAKQVFNSIILRDVVLWNTLLAA----- 407
           L    +++G +SDVV+ +SI+++Y +    +D A + F+ ++ R+   W+T++AA     
Sbjct: 245 LRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGG 304

Query: 408 --------------------------YADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
                                      A  GR  EA  LF Q+      P ++SWN++I 
Sbjct: 305 RIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIP----DPIVVSWNAMIT 360

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
           G+++NG ++EAK++F +M       N I+W  +I+G  QN    EA+   Q +   G+ P
Sbjct: 361 GYMQNGMVDEAKELFDRMPF----RNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLP 416

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
           S +++T +  AC+ + +L  GR +H   ++      + +  +L+ MY KC N+   ++VF
Sbjct: 417 SLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVF 476

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           +    K+   +N+ I+    + +  +A  +F N+  +    D +++T I++A + A   +
Sbjct: 477 NRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSR----DVVSWTTIISAYAQAERGD 532

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           E +E F  M  +H+ KP+      +  LLS CG L  A
Sbjct: 533 EAVEFFKTMLHEHE-KPNSP---ILTILLSVCGGLGSA 566



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 150/628 (23%), Positives = 264/628 (42%), Gaps = 135/628 (21%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           S+ I    + G L EAR+VFD M  R+++AWNSMI  Y  +G+ E+A R+ +        
Sbjct: 37  SARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDA-RILF-------- 87

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
                           DA+  G    A  +++G              Y+++G + DA  V
Sbjct: 88  ----------------DAISGGNVRTATILLSG--------------YARLGRVLDARRV 117

Query: 341 FSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAK 387
           F  M ER+ V WN +++ YVQ+G               DV   +S+V  Y    ++ +A 
Sbjct: 118 FDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAW 177

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI------- 440
            +F  +  R++V W  +++ Y  + + G+   +F  M  EG SP+  ++ SV+       
Sbjct: 178 NLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQ 237

Query: 441 -LG--------FLRNGQMNE----------------AKDMFLQMQSLGVQPNLITWTTLI 475
            LG         L+ G  ++                A D+ ++     V+ N  TW+T+I
Sbjct: 238 DLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMI 297

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           + L+     + AI  +       I PS T +   L+ C        GR     ++     
Sbjct: 298 AALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARC--------GRITEARILFEQ-- 346

Query: 536 LPTPIVTS---LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
           +P PIV S   ++  Y + G + +AK +FD  P +    +  MI+GYA +G + EAL L 
Sbjct: 347 IPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLL 406

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC------- 645
           + L + G+ P   + T+   ACSH G +  G           QV       GC       
Sbjct: 407 QALHRNGMLPSLSSLTSSFLACSHIGALETG----------RQVHSLAVKAGCQFNSYVC 456

Query: 646 --VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
             ++++  +C N+ E +R +       D     S ++  V++N  E A +I +++L    
Sbjct: 457 NALISMYGKCRNM-EYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLS--- 512

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP-----------GCSWIQIGEEL 752
            +  ++  + +AYA + R +E  +    M  +  + N            G    ++G+++
Sbjct: 513 RDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQI 572

Query: 753 HVFVACDRSHPKTEEIYATLALLGMHVR 780
           H        H    E+    AL+ M+ +
Sbjct: 573 HTVAI---KHGMDSELIVANALMSMYFK 597



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 205/491 (41%), Gaps = 86/491 (17%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL------------------------- 132
           G +I A I   G    ++   +T L+   A+C  +                         
Sbjct: 303 GGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGY 362

Query: 133 ------DVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
                 D A  LF R+  +N  SWA +I    + G SE+AL     +  +G+ P    L 
Sbjct: 363 MQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLT 422

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD-------------- 232
           +   AC  +G +  GR VH   +K G     +V ++LI MYGKC +              
Sbjct: 423 SSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVK 482

Query: 233 -----------------LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
                            LE+AR +FD M++R+VV+W ++I  Y Q    +EA+  F  M 
Sbjct: 483 DTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTML 542

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            E  +P    +T +LS    L +   G+Q H VA+ +GM+ + ++ +++++ Y K G   
Sbjct: 543 HEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CA 601

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
           D+  VF  M ERDI TWN  I    Q G     +    + MY   E +          +L
Sbjct: 602 DSHKVFDSMEERDIFTWNTFITGCAQHG-----LGREAIKMYEHMESVG---------VL 647

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKD 454
            + V +  LL A +  G   E  + F  M  + G++P +  +  ++    R G +  A+ 
Sbjct: 648 PNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEK 707

Query: 455 MFLQMQSLGVQPNLITWTTLISG--LTQNS-CGNEAI--LFFQEMLETGIKPSTTTITCA 509
               M    ++P+ + W+ L+    + +N+  G  A   LF  E    G     + I  +
Sbjct: 708 FIYDMP---IEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSS 764

Query: 510 LSACTDVASLR 520
           L    +VA LR
Sbjct: 765 LGMWVEVAELR 775



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 157/351 (44%), Gaps = 46/351 (13%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+  ++  +  EA+DLL  +                  C +   + TG+Q+H+  
Sbjct: 385 SWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLA 444

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN------------------- 146
           +K G  F  N YV   L+  Y KC  ++   ++F R+RVK+                   
Sbjct: 445 VKAGCQF--NSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLED 502

Query: 147 ------------VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
                       V SW  II    +    ++A+  F  M  +   P++ +L  +L  CG 
Sbjct: 503 ARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGG 562

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           LG    G+ +H   +K G D  + VA++L+ MY KCG   ++ KVFD M  R++  WN+ 
Sbjct: 563 LGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEERDIFTWNTF 621

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           I G  Q+GL  EAI+++  M   GV P  V+   +L+A ++   +DEG Q         M
Sbjct: 622 ITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQ-----FFKSM 676

Query: 315 ELDNVLG------SSIINFYSKVGLLEDAE-VVFSRMVERDIVTWNLLIAS 358
             D  L       + +++   + G ++ AE  ++   +E D V W+ L+ +
Sbjct: 677 SRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGA 727



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 159/360 (44%), Gaps = 57/360 (15%)

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----------- 364
           LD    S+ I   +++G L +A  VF  M  RDI+ WN +I++Y  SG            
Sbjct: 31  LDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAI 90

Query: 365 --SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
              +V  A+ ++  YA+  R+ +A++VF+ +  R+ V WN +++ Y   G    A RLF 
Sbjct: 91  SGGNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFD 150

Query: 423 QMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
            M     S ++ SWNS++ G+  + QM +A ++F QM     Q NL+TWT +ISG  +  
Sbjct: 151 AMP----SRDVTSWNSMVTGYCHSRQMVDAWNLFKQMP----QRNLVTWTVMISGYVRIE 202

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
              +    F+ M   G  P  +     LSA T +  L     +   +++        I T
Sbjct: 203 QHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGT 262

Query: 543 SLVDMYAK--------------------------------CGNIHQAKRVFDISPSKELP 570
           S++++Y +                                 G I  A  V+   P K +P
Sbjct: 263 SILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIP 322

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
              A+++G A  G   EA  LF+ +     DP  +++  ++      G+V+E  ELF  M
Sbjct: 323 SQTALLTGLARCGRITEARILFEQIP----DPIVVSWNAMITGYMQNGMVDEAKELFDRM 378



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 37  DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMY 96
           DN       S+   IS+ ++ ++  EAV+    M   + +    I   LL  C       
Sbjct: 508 DNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAK 567

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
            GQQIH   +K+G        V   L+  Y KC   D + ++F  +  +++F+W   I  
Sbjct: 568 LGQQIHTVAIKHG--MDSELIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTFITG 624

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK-VGFDG 215
             + GL  +A+  +  M+  GV P+      +L AC   G V  G      + +  G   
Sbjct: 625 CAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTP 684

Query: 216 CVFVASSLIDMYGKCGDLEEARK-VFDGMIARNVVAWNSMI 255
            +   + ++D+ G+ GD++ A K ++D  I  + V W++++
Sbjct: 685 LLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALL 725


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 206/593 (34%), Positives = 316/593 (53%), Gaps = 31/593 (5%)

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           L  C +L  V   + +H  VLK       FV   LI  +  C  +  A  VF+ +   +V
Sbjct: 24  LHRCSSLNQV---KQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDV 80

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
           + +N++I  +V+N     A  VF+EM   GV     +   +L A +    +   +  HA 
Sbjct: 81  LLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQ 140

Query: 309 AVINGMELDNVLGSSIINFYSKVGL--LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
               G  LD  + +S+I+ Y K GL  +  A  VF  M ERD V+WN +I   V+ G+  
Sbjct: 141 VEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGE-- 198

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                           +  A+++F+ +  RD V WNT+L  Y   G    A  LF +M  
Sbjct: 199 ----------------LGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMP- 241

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
              + N++SW++++LG+ + G M+ A+ +F +M       NL+ WT +ISG  +     +
Sbjct: 242 ---ARNVVSWSTMVLGYSKAGDMDMARILFDKMPV----KNLVPWTIMISGYAEKGLAKD 294

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           AI  + +M E G+K    T+   LSAC     L  G+ +H  + R      TP+  +L+D
Sbjct: 295 AINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALID 354

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MYAKCG++  A  +F     K++  +NA+I G AMHG   +AL LF  ++ +G  PD +T
Sbjct: 355 MYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVT 414

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           F  +L AC+HAG V+EGL  F  M  D+ V P +EH+GC+V+LL R G L EA R++ +M
Sbjct: 415 FVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSM 474

Query: 667 PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726
           P +P+A I G+LL  C   + T LAE + + L++ E  + GN   LSN YAA+G W+  +
Sbjct: 475 PLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFA 534

Query: 727 QVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
            +R  MK   ++K  G S I++ +E+H F   DRSHPK++ IY T+  LG H+
Sbjct: 535 NIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTIDGLGQHI 587



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 150/552 (27%), Positives = 254/552 (46%), Gaps = 47/552 (8%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +QIHA++LK      R  +V  KL+  ++ C  + +A  +F +++  +V  +  +I  + 
Sbjct: 34  KQIHAQVLKAN--LHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHV 91

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           R      A   F EMQ+ GV  DNF  P +LKAC    WV     +H  V K+GF   +F
Sbjct: 92  RNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIF 151

Query: 219 VASSLIDMYGKCG--DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V +SLID Y KCG   +  ARKVF+ M  R+ V+WNSMI G V+ G   EA R+F EM  
Sbjct: 152 VPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMP- 210

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLE 335
              E   VS  +IL        +  G+   A  +   M   NV+  S+++  YSK G ++
Sbjct: 211 ---ERDTVSWNTILDG-----YVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMD 262

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE----RIDNAKQVFN 391
            A ++F +M  +++V W ++I+ Y + G     +A   +++Y + E    + D+   +  
Sbjct: 263 MARILFDKMPVKNLVPWTIMISGYAEKG-----LAKDAINLYNQMEEAGLKFDDGTVI-- 315

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
                      ++L+A A  G  G   R+   ++      +    N++I  + + G +  
Sbjct: 316 -----------SILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLEN 364

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A  +F  M    V+ ++++W  +I GL  +  G +A+  F  M   G  P   T    L 
Sbjct: 365 ALSIFHGM----VRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLC 420

Query: 512 ACTDVASLRNGRAIHGY-LIRHDLCLPTPI--VTSLVDMYAKCGNIHQAKRVFDISP-SK 567
           ACT    +  G  +H +  +  D  +P  +     +VD+  + G + +A R+    P   
Sbjct: 421 ACTHAGFVDEG--LHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEP 478

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
              ++  ++    MH     A  +F  L +  +  DS   + + N  + AG  +    + 
Sbjct: 479 NAIIWGTLLGACRMHSATGLAEEVFDRLVKSELS-DSGNLSMLSNIYAAAGDWDNFANIR 537

Query: 628 VGMFSDHQVKPS 639
           + M S    KPS
Sbjct: 538 LRMKSTSIQKPS 549



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 171/343 (49%), Gaps = 14/343 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I  L K  ++ EA  L  EM  R+       +  +L G V   +M    ++  ++
Sbjct: 185 SWNSMIGGLVKVGELGEARRLFDEMPERD----TVSWNTILDGYVKAGEMNAAFELFEKM 240

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
                  ARN    + +V+ Y+K   +D+A  LF ++ VKN+  W  +I      GL++ 
Sbjct: 241 P------ARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKD 294

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  + +M+E G+  D+  + ++L AC   G +G G+ VH  + +  F     V+++LID
Sbjct: 295 AINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALID 354

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY KCG LE A  +F GM+ ++VV+WN++I G   +G  E+A+++F  M  EG  P +V+
Sbjct: 355 MYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVT 414

Query: 286 VTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDA-EVVFSR 343
              +L A  +   +DEG    HA+    G+  +      +++   + G L++A  +V S 
Sbjct: 415 FVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSM 474

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNA 386
            +E + + W  L+ +      S   +A  + D   K E  D+ 
Sbjct: 475 PLEPNAIIWGTLLGACRM--HSATGLAEEVFDRLVKSELSDSG 515


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/565 (33%), Positives = 321/565 (56%), Gaps = 36/565 (6%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           F+ S LI  Y K G + +A  VF  +  +N+ +WN++++ Y  + ++ + +++F  +   
Sbjct: 39  FLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNS 98

Query: 278 G---VEPTRVSVTSILSASANLDALDEG--KQAHAVAVINGMELDNVLGSSIINFYSKVG 332
               V+P R +VT  L A A+L + + G  K+ H+  +  G+E D  + +++I FYS+  
Sbjct: 99  NSTDVKPDRFTVTCALKALASLFS-NSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCD 157

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------QSDVVVASSIV 374
            L  A ++F RM ERDIV+WN ++A Y Q G                  + + + A S++
Sbjct: 158 ELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVL 217

Query: 375 DMYAKCER----IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
              A+       I+  + V  S I  DV LWN ++  YA  G    A  LF +M    + 
Sbjct: 218 QACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEM----LE 273

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
            + I++ S+I G++ +G +N+A D+F + +    +P L TW  +ISGL QN+    A+  
Sbjct: 274 KDAITYCSMISGYMVHGFVNQAMDLFREQE----RPRLPTWNAVISGLVQNNRQEGAVDI 329

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           F+ M   G +P+T T+   L   +  ++L+ G+ IHGY IR+       + T+++D YAK
Sbjct: 330 FRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAK 389

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           CG +H A+ VFD    + L  + ++IS YA+HG A  AL+LF  +   GI PD +TFT++
Sbjct: 390 CGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSV 449

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L AC+H+G ++E  ++F  +  ++ ++P +EH+ C+V +LSR G L +A+  I  MP +P
Sbjct: 450 LAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEP 509

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
            A + G+LL+    + + EL +Y+ + L ++EP+N GNYV ++N Y+ SGRW +   +RD
Sbjct: 510 TAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRD 569

Query: 731 IMKEKGLRKNPGCSWIQIGEELHVF 755
           +MKE  L+K PG SWI+    +  F
Sbjct: 570 LMKEVRLKKIPGNSWIETSGGMQRF 594



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 162/621 (26%), Positives = 280/621 (45%), Gaps = 105/621 (16%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           YG L+Q C        G+Q+HAR++ +      + ++ +KL+ FY+K  ++  A  +F +
Sbjct: 6   YGRLIQHCTDHLFFRVGKQLHARLVLSS--VVPDNFLGSKLISFYSKSGSIRDAYNVFGK 63

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGF---VEMQEDGVSPDNFVLPNVLKACGAL-GW 197
           +  KN+FSW A++       +    L  F   V      V PD F +   LKA  +L   
Sbjct: 64  IPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSN 123

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
            G  + VH ++L+ G +  +FV ++LI  Y +C +L  AR +FD M  R++V+WN+M+ G
Sbjct: 124 SGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAG 183

Query: 258 YVQNGLNEEAIRVFYEM--TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
           Y Q G  E+   +F  M  +LE V+P  ++  S+L A A  + L  G + H     + ++
Sbjct: 184 YSQGGSYEKCKELFRVMLSSLE-VKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIK 242

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVD 375
           +D  L +++I  Y+K G L+ A  +F  M+E+D +T+  +I+ Y+  G       +  +D
Sbjct: 243 MDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHG-----FVNQAMD 297

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
           ++ + ER               +  WN +++      R   A  +F  MQ  G  PN ++
Sbjct: 298 LFREQER-------------PRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVT 344

Query: 436 WNSVILGF----------------LRN-------------------GQMNEAKDMFLQMQ 460
             S++  F                +RN                   G ++ A+ +F Q++
Sbjct: 345 LASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIK 404

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
                 +LI WT++IS    +   N A+  F EML  GI+P   T T  L+AC     L 
Sbjct: 405 G----RSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELD 460

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYA-KCGNIHQAKRVFDISPSKELPVYNAMISGY 579
               I   L      LP   +  LV+ YA   G + +A ++ D                 
Sbjct: 461 EAWKIFNVL------LPEYGIQPLVEHYACMVGVLSRAGKLSD----------------- 497

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP- 638
                AVE ++      +  ++P +  +  +LN  S AG V  G  +F  +F   +++P 
Sbjct: 498 -----AVEFIS------KMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLF---EIEPE 543

Query: 639 SMEHFGCVVNLLSRCGNLDEA 659
           +  ++  + NL S+ G   +A
Sbjct: 544 NTGNYVIMANLYSQSGRWKDA 564


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 190/549 (34%), Positives = 298/549 (54%), Gaps = 27/549 (4%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           +E A KVFD +   N   WN+M  GY QN  +++ I +F +M    V P   +   IL +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
              ++AL EG++ H   + +G   +  + +++I+ Y+  G +  A  VF  M+ER+++ W
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
             +I  Y+                   C  +  A+++F+    RD+VLWNT+++ Y +  
Sbjct: 121 TAMINGYIT------------------CCDLVTARRLFDLAPERDIVLWNTMISGYIEAK 162

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
               A  LF +M     + +++SWN+V+ G+  NG +   + +F +M     + N+ +W 
Sbjct: 163 DVIRARELFDKMP----NKDVMSWNTVLNGYASNGDVMACERLFEEMP----ERNVFSWN 214

Query: 473 TLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
            LI G T+N C +E +  F+ ML  G + P+  T+   LSAC  + +L  G+ +H Y   
Sbjct: 215 ALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAES 274

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
           H       +  +L+DMYAKCG +  A  VF    +K+L  +N +I G A+HG   +AL L
Sbjct: 275 HGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNL 334

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F +++  G +PD ITF  IL AC+H GLV +G   F  M  D+ + P +EH+GC+V+LL 
Sbjct: 335 FSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLG 394

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G L  A+  I  MP + DA I  +LL  C      ELAE   E L++ EP NP NYV 
Sbjct: 395 RAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVM 454

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
           LSN Y   GRW +V++++  M++ G +K PGCS I++ + L  F + D  HP+ E+IY T
Sbjct: 455 LSNIYGDFGRWKDVARLKVAMRDTGFKKLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGT 514

Query: 772 LALLGMHVR 780
           L  L   +R
Sbjct: 515 LRTLTKLLR 523



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 189/437 (43%), Gaps = 67/437 (15%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           ++ A ++F ++   N   W A+     +    +  ++ F +M+   V P+ F  P +LK+
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C  +  +  G  VH +V+K GF    FVA++LIDMY   G +  A +VF  MI RNV+AW
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
            +MI GY+       A R+F       + P R  V      S  ++A D      A  + 
Sbjct: 121 TAMINGYITCCDLVTARRLF------DLAPERDIVLWNTMISGYIEAKD---VIRARELF 171

Query: 312 NGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------- 363
           + M   +V+  ++++N Y+  G +   E +F  M ER++ +WN LI  Y ++G       
Sbjct: 172 DKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLS 231

Query: 364 ----------------------------------------------QSDVVVASSIVDMY 377
                                                         + +V V ++++DMY
Sbjct: 232 AFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMY 291

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           AKC  ++ A  VF S+  +D++ WNT++   A  G   +A  LF  M++ G +P+ I++ 
Sbjct: 292 AKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFI 351

Query: 438 SVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
            ++      G + +    F  M     + P +  +  ++  L +      A+ F ++M  
Sbjct: 352 GILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKM-- 409

Query: 497 TGIKPSTTTITCALSAC 513
             I+         L AC
Sbjct: 410 -PIEADAVIWAALLGAC 425



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 175/377 (46%), Gaps = 38/377 (10%)

Query: 65  DLLTEMKCRNFQIGPE----IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           DL+T    R F + PE    ++  ++ G +  +D+   +++  + + N D  + N  +  
Sbjct: 132 DLVTAR--RLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDK-MPNKDVMSWNTVLNG 188

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VS 179
                YA    +    RLF  +  +NVFSW A+IG   R G   + L  F  M  DG V 
Sbjct: 189 -----YASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVV 243

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           P++  L NVL AC  LG +  G+ VH Y    G+ G V+V ++L+DMY KCG +E A  V
Sbjct: 244 PNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDV 303

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F  M  +++++WN++I G   +G   +A+ +F  M + G  P  ++   IL A  ++  +
Sbjct: 304 FKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLV 363

Query: 300 DEG-----KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWN 353
           ++G           +++  +E        I++   + GLL  A     +M +E D V W 
Sbjct: 364 EDGFSYFKSMTDDYSIVPRIE----HYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWA 419

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
            L+ +       +V +A   ++   + E     K   N ++L ++         Y D GR
Sbjct: 420 ALLGA--CRVYKNVELAELALEKLIEFE----PKNPANYVMLSNI---------YGDFGR 464

Query: 414 SGEASRLFYQMQLEGIS 430
             + +RL   M+  G  
Sbjct: 465 WKDVARLKVAMRDTGFK 481



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 163/332 (49%), Gaps = 30/332 (9%)

Query: 40  YESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQ 99
           + ++++ Y       S+ +  ++ + L  +MK  +       +  +L+ CV    +  G+
Sbjct: 19  WNAMFRGY-------SQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINALKEGE 71

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG--LN 157
           ++H  ++K+G  F  N +V T L+  YA   A+  A R+F  +  +NV +W A+I   + 
Sbjct: 72  EVHCFVIKSG--FRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYIT 129

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC- 216
           C   ++ + L        D     + VL N + +    G++     +    L   FD   
Sbjct: 130 CCDLVTARRLF-------DLAPERDIVLWNTMIS----GYIEAKDVIRAREL---FDKMP 175

Query: 217 ---VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
              V   +++++ Y   GD+    ++F+ M  RNV +WN++I GY +NG   E +  F  
Sbjct: 176 NKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKR 235

Query: 274 MTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
           M ++G V P   ++ ++LSA A L ALD GK  H  A  +G + +  + +++++ Y+K G
Sbjct: 236 MLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCG 295

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
           ++E A  VF  M  +D+++WN +I      G 
Sbjct: 296 VVETALDVFKSMDNKDLISWNTIIGGLAVHGH 327


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  353 bits (907), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 216/682 (31%), Positives = 355/682 (52%), Gaps = 83/682 (12%)

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           +V+ W  +I           AL  F  M+    +PD++  P V KACG +     G ++H
Sbjct: 90  SVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIH 149

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV---VAWNSMIVGYVQNG 262
           G V+++GF+  VFV +++I MYGKC  +  ARKVFD +  R +   V WNS++  Y    
Sbjct: 150 GCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCF 209

Query: 263 LNEEAIRVFYEMTL-EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           +   A+ +F EMT+  G+ P  V V +IL     L     G+Q H   V +G+  D  +G
Sbjct: 210 VPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVG 269

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +++++ Y+K G +EDA  VF RM  +                  DVV  +++V  Y++  
Sbjct: 270 NALVDMYAKCGKMEDANKVFERMRFK------------------DVVTWNAMVTGYSQNG 311

Query: 382 RIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           R ++A  +F  +    I  DVV W+++++ YA  G   EA  +F QM      PN+++  
Sbjct: 312 RFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLM 371

Query: 438 SVI-------------------LGFLRNGQMNEAKD----------MFLQMQSLGV---- 464
           S++                   + F+  G+ N+  D          M+ + +SL V    
Sbjct: 372 SLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAM 431

Query: 465 -------QPNLITWTTLISGLTQNSCGNEAILFFQEM--LETGIKPSTTTITCALSACTD 515
                    +++TWT +I G  Q+   N A+  F EM  ++  I P+  TI+C L AC  
Sbjct: 432 FDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACAR 491

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTS--LVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
           +A+L+ G+ IH Y++R        +  +  L+DMY+K G++  A+ VFD    +    + 
Sbjct: 492 LAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWT 551

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           ++++GY MHG + +A  +F  ++++ +  D ITF  +L ACSH+G+             D
Sbjct: 552 SLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM-------------D 598

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
             V P +EH+ C+V+LL R G L EA+R+I  MP +P   +  +LLS C   +  ELAE+
Sbjct: 599 FGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEF 658

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            ++ LL+L+ DN G Y  LSN YA + RW +V+++  +MK  G++K PG SW++  + + 
Sbjct: 659 AAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGME 718

Query: 754 VFVACDRSHPKTEEIYATLALL 775
            F   DR+H ++++IY TLA L
Sbjct: 719 TFYVGDRTHLQSQKIYETLADL 740



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 15/208 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKN 108
           I   ++      A+ L +EM   +  I P  +    +L  C     +  G+QIHA +L+ 
Sbjct: 449 IGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRR 508

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
               +   +V   L+  Y+K   +D A  +F  +  +N  SW +++      G SE A  
Sbjct: 509 SRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFR 568

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F EM+++ +  D      VL AC   G            +  G D  V   + ++D+ G
Sbjct: 569 VFDEMRKEALVLDGITFLVVLYACSHSG------------MDFGVDPGVEHYACMVDLLG 616

Query: 229 KCGDLEEARKVFDGM-IARNVVAWNSMI 255
           + G L EA ++ + M I    V W +++
Sbjct: 617 RAGRLGEAMRLINDMPIEPTPVVWIALL 644


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  353 bits (907), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 221/757 (29%), Positives = 371/757 (49%), Gaps = 83/757 (10%)

Query: 69  EMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK 128
           +M+   F      YG +L  C        G+ +++  LKNG  F  N YV   ++  +AK
Sbjct: 137 KMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNG--FFSNGYVRAGMIDLFAK 194

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188
             + + A R+F  +  +NV  W AII    +   +  AL  F +M      P++F   ++
Sbjct: 195 LCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSI 254

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           L AC AL  + FGR V G+V+K G    VFV +++ID+Y KC D+++A K F  M  RNV
Sbjct: 255 LTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNV 314

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
           V+W ++I G+VQ   +  A   F EM   G +    ++TS+L+A      + E  Q H+ 
Sbjct: 315 VSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSW 374

Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQS-- 365
               G  LD+ + S++IN YSK+G+++ +E VF  M   +++  W ++I+++ QSG +  
Sbjct: 375 IFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGR 434

Query: 366 -----------------------------------------------DVVVASSIVDMYA 378
                                                          D+ V SS+  MY+
Sbjct: 435 AVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYS 494

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
           KC  ++ +  VF  +  +D V W +++  +++   + +A +LF +M LE I P+ ++  +
Sbjct: 495 KCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTA 554

Query: 439 VILGFLRNGQMNEAKDM------------------FLQMQS-------------LGVQPN 467
            +        + + K++                   + M S             +  Q +
Sbjct: 555 ALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKD 614

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
             + ++L+SG  QN    +A+L F E+    +   + T++  + A   + SL  G  +H 
Sbjct: 615 QFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHA 674

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
            + +  L     + +SLV MY+KCG+I +  +VF+     +L  + AMI  YA HG   E
Sbjct: 675 CVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAE 734

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVV 647
           AL ++  ++++G  PDS+TF  +L+ACSH G+V EG      M  ++ ++P   H+ C+V
Sbjct: 735 ALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMV 794

Query: 648 NLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707
           +LL R G L EA R I  MP +PDA + G LL+ C    + EL    ++ +++LEP   G
Sbjct: 795 DLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAG 854

Query: 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
            YV LSN  A  G W +V ++R +M+  G++K PG S
Sbjct: 855 AYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPGWS 891



 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 191/731 (26%), Positives = 341/731 (46%), Gaps = 138/731 (18%)

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
           +HA  LK       N ++   L+ +Y K +++  A RLF +    NV SW  +I   C  
Sbjct: 67  LHAHFLKTA-ILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILIS-GCNQ 124

Query: 161 GLS-EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
             S E +   F +M+  G  P+ F   +VL AC ALG   +G  V+   LK GF    +V
Sbjct: 125 NFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYV 184

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
            + +ID++ K    E+A +VF  ++  NVV WN++I G V+N  N  A+ +F +M     
Sbjct: 185 RAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFF 244

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P   + +SIL+A A L+ L+ G+      +  G   D  +G++II+ Y+K   ++ A  
Sbjct: 245 MPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVK 304

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQS---------------------------------- 365
            F RM  R++V+W  +I+ +VQ   S                                  
Sbjct: 305 EFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVM 364

Query: 366 ------------------DVVVASSIVDMYAKCERIDNAKQVFNSI-ILRDVVLWNTLLA 406
                             D  V+S++++MY+K   +D +++VF  +   +++ +W  +++
Sbjct: 365 IKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMIS 424

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-------LGFL--------------- 444
           A+A  G +G A  LF +M  EG+ P+    +SV+       LG L               
Sbjct: 425 AFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDIS 484

Query: 445 ----------RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
                     + G + E+  +F QM       + ++W ++I+G +++    +A+  F+EM
Sbjct: 485 VGSSLFTMYSKCGSLEESYTVFEQMP----DKDNVSWASMITGFSEHDHAEQAVQLFREM 540

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
           L   I+P   T+T AL+AC+ + SL  G+ +HGY +R  +     +  +LV+MY+KCG I
Sbjct: 541 LLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAI 600

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A+RVFD+ P K+    ++++SGYA +G   +AL LF  ++   +  DS T ++++ A 
Sbjct: 601 VLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAV 660

Query: 615 SHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669
           +    ++ G +L      +G+ ++  V  S+      V + S+CG++DE  +V       
Sbjct: 661 AILNSLDIGTQLHACVTKMGLNAEVSVGSSL------VTMYSKCGSIDECHKV------- 707

Query: 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR 729
                                         Q+E  +  ++ A+  +YA  G+  E  +V 
Sbjct: 708 ----------------------------FEQIEKPDLISWTAMIVSYAQHGKGAEALKVY 739

Query: 730 DIMKEKGLRKN 740
           D+M+++G + +
Sbjct: 740 DLMRKEGTKPD 750


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 213/671 (31%), Positives = 347/671 (51%), Gaps = 84/671 (12%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M   GV  D+   P VLK C     +  G  VHG V K+GFD  V+V ++L+ +YG CG 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV-EPTRVSVTSILS 291
           L +AR++FD M  R+VV+WN++I     NG   EA   ++ M L  V +P  VSV S+L 
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLP 120

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
            SA L+  +  ++ H  +V  G++      +++++ Y K G ++    VF+  VE++ V+
Sbjct: 121 ISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVS 180

Query: 352 WNLLIASYVQSG------------------------------------------------ 363
           WN +I      G                                                
Sbjct: 181 WNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSM 240

Query: 364 ----QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
               ++D+ +A+S++DMYAK      A  +F+++  R++V WN ++A YA      EA R
Sbjct: 241 RMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIR 300

Query: 420 LFYQMQLEGISPNIISWNSVI-----LGFLRNGQ-----------------MNEAKDMFL 457
              QMQ  G  PN +++ +V+     LGFL  G+                  N   DM+ 
Sbjct: 301 FVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYA 360

Query: 458 QMQSLGVQPNL--------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           +   L    N+        +++  LI G ++     +++  F EM   G KP   +    
Sbjct: 361 KCGCLHSARNVFNTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGV 420

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           +SAC ++A+L+ G+ +HG  +R+ L     +  SL+D Y KCG I  A R+F+    K++
Sbjct: 421 ISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDV 480

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +N MI GY M G    A+++F+ ++   +  D +++  +L+ACSH GLV  G + F  
Sbjct: 481 ASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSE 540

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M +  +++P+  H+ C+V+LL R G ++EA ++I  +P  PDA+I G+LL  C      E
Sbjct: 541 MLA-QRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVE 599

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           L    +EHL +L+P + G Y+ LSN YA +GRW+E +++R++MK +G +KNPGCSW+QI 
Sbjct: 600 LGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIY 659

Query: 750 EELHVFVACDR 760
           +++H FVA +R
Sbjct: 660 DQVHAFVAEER 670



 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/501 (27%), Positives = 234/501 (46%), Gaps = 63/501 (12%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDGVSP 180
           LV  Y KC ++    ++F     KN  SW +II GL C+ G    AL  F  M + G  P
Sbjct: 153 LVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACK-GRCWDALNAFRMMIDAGAQP 211

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           ++  + ++L     L     G+ +HG+ +++G +  +F+A+SLIDMY K G   EA  +F
Sbjct: 212 NSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIF 271

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
             +  RN+V+WN+MI  Y  N L  EAIR   +M   G  P  V+ T++L A A L  L 
Sbjct: 272 HNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLG 331

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            GK+ HA+ V  G+  D  + +S+I+ Y+K G L  A  VF+    +D V++N+LI  Y 
Sbjct: 332 PGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYS 390

Query: 361 QSG-----------------QSDVV----------------------------------- 368
           ++                  + DVV                                   
Sbjct: 391 ETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLF 450

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           V++S++D Y KC RID A ++FN I+ +DV  WNT++  Y  +G    A  +F  M+ + 
Sbjct: 451 VSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDT 510

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
           +  +++S+ +V+      G +      F +M +  ++P  + +T ++  L +     EA 
Sbjct: 511 VQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVEEAA 570

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGR--AIHGYLIRHDLCLPTPIVTSLVD 546
              Q++    I P        L AC    ++  GR  A H + ++   C        L +
Sbjct: 571 KLIQQL---PIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHC---GYYILLSN 624

Query: 547 MYAKCGNIHQAKRVFDISPSK 567
           +YA+ G   +A ++ ++  S+
Sbjct: 625 IYAETGRWDEANKIRELMKSR 645


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 231/774 (29%), Positives = 375/774 (48%), Gaps = 96/774 (12%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
           +Y  L + C   R +     +H+ +L  G     +    TKL+  Y++   L  +  +F 
Sbjct: 3   LYMPLFRSCTSLRPL---TLLHSHLLVTG--LHHDPQASTKLIESYSQIGCLQSSKLVFE 57

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
             +  + F WA +I  +       +A+  + +M    +   +F+  +VL+AC   G +  
Sbjct: 58  TFQNPDSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDV 117

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G  VHG ++K G D    V +SL+ MYG  G L  A+KVFD M  R++V+W+S+I  YV 
Sbjct: 118 GEEVHGRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVD 177

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           NG + E + +F  +  + VE   V++ SI  A   L  L   K  H   +   +E    L
Sbjct: 178 NGESSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPL 237

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS------------------ 362
             +++  YS+      AE +FS M  R I +W  +I+ Y +S                  
Sbjct: 238 NDALVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKV 297

Query: 363 ----------------------GQS------------DVVVASSIVDMYAKCERIDNAKQ 388
                                 G+S            D  +  ++++ YA+  ++   ++
Sbjct: 298 APNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEK 357

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI--------------I 434
           V ++I  R+++ WN L++ YA  G   EA  +F QMQ +G  P+               +
Sbjct: 358 VLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGL 417

Query: 435 SW--------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
            W                    NS+I  + + G ++ A  +F ++QS     +++ W ++
Sbjct: 418 LWLGHQIHGYAIKRHILDEFVQNSLIDMYSKCGHVDLAYLIFDRIQS----KSVVAWNSM 473

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           I G +Q     EAI  F +M    +  +  T   A+ AC+ +  L  G+ +H  LI + +
Sbjct: 474 ICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGV 533

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
                I T+L+DMYAKCG++  A RVFD    + +  ++AMI G  MHG    A++LF  
Sbjct: 534 KKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDIDAAISLFAE 593

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           + Q+ + P+ ITF NIL+ACSH+G V EG   F  M  + +V+P++EHF C+V+LLSR G
Sbjct: 594 MIQREMKPNDITFMNILSACSHSGYVEEGKFYFNSM-KNFEVEPNLEHFACMVDLLSRAG 652

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
           +LDEA R+I +MP   +A I G+LL+ C      ++   I   LL +  D+ G Y  LSN
Sbjct: 653 DLDEAYRIINSMPFPAEASIWGALLNGCRIHQRMDMIRNIERDLLDMRTDDTGYYTLLSN 712

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
            YA  G W+   +VR  MK  GL+K PG S I++ ++++ F A D SH + +EI
Sbjct: 713 IYAEEGNWDVSRKVRSAMKGIGLKKVPGYSTIELDKKVYRFGAGDVSHWQVKEI 766


>gi|302766259|ref|XP_002966550.1| hypothetical protein SELMODRAFT_399 [Selaginella moellendorffii]
 gi|300165970|gb|EFJ32577.1| hypothetical protein SELMODRAFT_399 [Selaginella moellendorffii]
          Length = 732

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 209/745 (28%), Positives = 368/745 (49%), Gaps = 103/745 (13%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           +A++L   M+    +     +   L+ C  +  +  G+++HA I ++G     + Y    
Sbjct: 1   QALELYKRMQLEGVRPDSVTFVTCLRACTVEGALDDGRKVHAYIRESG--LETDIYAANA 58

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG-LSEKALIGFVEMQEDGVSP 180
           L+  Y KC + + A +LF R+   NV SW ++IG   + G L  ++++ F +M+ +G+ P
Sbjct: 59  LINMYGKCRSPEDAFQLFSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRP 118

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           +   +  VL+AC     +  GR VHGYVL+ G      + ++L+DMY K GD++EA  V 
Sbjct: 119 NLITMVAVLRACN----LTDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGDVDEADLVL 174

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
             M  R+V++WN MI GY Q+G  +E +R  + M  +G+ PT+V+  ++L+A ++ + L 
Sbjct: 175 REMPKRDVISWNIMISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSGEDLG 234

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           EGK  H   V  G++ D V+ S ++  Y K G LED +     + ER+ + WN +I +Y 
Sbjct: 235 EGKSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWNTIIGAYA 294

Query: 361 ---------------------------------------------------QSGQSDVVV 369
                                                              Q G   ++V
Sbjct: 295 RYSDHFQALRSFQQMQLQGVKADAVTFVLMLGTCSSPAHLAQGILLHDWISQLGFESIIV 354

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
            +S+  MYAKC  +D A+++F  +  R+ V WN+L++A    G   +A + F +M+LEG 
Sbjct: 355 HNSLTAMYAKCGSLDAARKMFEGMPSRNSVSWNSLISAAIQHGCYADAHKFFQRMKLEGS 414

Query: 430 SPNIISW-----------------------------------NSVILGFLRNGQMNEAKD 454
            P+ ++                                    N++I  + + G    A++
Sbjct: 415 RPDEVTCISMLDACTKQANAKEGSSIHQMVVESGFDKRTGVANALIFMYAKLGDHEAARN 474

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F  M     + N ++W T+++   +     +A+  F +M    +     T   AL AC+
Sbjct: 475 VFDAM----AERNTVSWNTILAAYVEKGLNRDAVEMFWKM---DVARDKVTYVAALDACS 527

Query: 515 DVAS-LRNGRAIHGYLIRHDLC--LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
            +A  L +G+ IHGY++ H     L T   T+LV+MY KCG++ +A+++FD    +++  
Sbjct: 528 GLAGGLAHGKLIHGYMLDHGFSNRLDTVAATALVNMYGKCGSLQEARKIFDEMLHRDVVT 587

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           + ++I  YA H    +AL L K ++Q G+  D + F +IL+ C H+GL+ EG + FV M 
Sbjct: 588 WTSLIVAYAQHSEIEQALKLVKIMEQDGVKVDDVVFLSILSGCDHSGLLEEGCKYFVSMI 647

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
            D+ + P +EH+ C++++L R G+LD A +++  +P   D+ +  +LL+ C      E  
Sbjct: 648 DDYGISPRLEHYNCIIDVLGRAGHLDLAEKLVDRLPSRSDSKVWMTLLAACRMHGNPERG 707

Query: 692 EYISEHLLQLEPDNPGNYVALSNAY 716
           +  +  +  L+P  P  YV LSN Y
Sbjct: 708 KRAARRITLLDPSIPAAYVVLSNIY 732


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 209/666 (31%), Positives = 338/666 (50%), Gaps = 84/666 (12%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           ++L+AC     +   + +H + LK   +    V   L  +Y  C  +  AR++FD +   
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           +V+ WN +I  Y  NG  + AI +++ M   GV P + +   +L A + L A+++G + H
Sbjct: 73  SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
           + A + G+E D  + +++++FY+K G+L +A+ +FS M  RD+V WN +IA     G  D
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD 192

Query: 367 ----------------------------------------------------VVVASSIV 374
                                                               VVV + ++
Sbjct: 193 DAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLL 252

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL-EGISPNI 433
           DMYAKC+ +  A+++F+ + +R+ V W+ ++  Y       EA  LF QM L + + P  
Sbjct: 253 DMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTP 312

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL------------------------- 468
           ++  SV+    +   ++  + +   +  LG   ++                         
Sbjct: 313 VTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDX 372

Query: 469 ------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
                 ++++ ++SG  QN     A+  F+ M  +GI P  TT+   L AC+ +A+L++G
Sbjct: 373 MNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
              HGYLI       T I  +L+DMY+KCG I  A+ VF+     ++  +NAMI GY +H
Sbjct: 433 FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIH 492

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           GL +EAL LF +L   G+ PD ITF  +L++CSH+GLV EG   F  M  D  + P MEH
Sbjct: 493 GLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEH 552

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
             C+V++L R G +DEA   I  MP +PD  I  +LLS C      EL E +S+ +  L 
Sbjct: 553 CICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG 612

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           P++ GN+V LSN Y+A+GRW++ + +R   K+ GL+K PGCSWI+I   +H FV  D+SH
Sbjct: 613 PESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 672

Query: 763 PKTEEI 768
            +  +I
Sbjct: 673 LQLSQI 678



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 161/306 (52%), Gaps = 13/306 (4%)

Query: 60  IREAVDLLTEMKCRN-FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           ++EA++L  +M  ++     P   G +L+ C    D+  G+++H  I+K G     +  +
Sbjct: 292 MKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVL--DILL 349

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
              L+  YAKC  +D A R F  +  K+  S++AI+    + G +  AL  F  MQ  G+
Sbjct: 350 GNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGI 409

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
            PD   +  VL AC  L  +  G   HGY++  GF     + ++LIDMY KCG +  AR+
Sbjct: 410 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFARE 469

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VF+ M   ++V+WN+MI+GY  +GL  EA+ +F+++   G++P  ++   +LS+ ++   
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGL 529

Query: 299 LDEGK-----QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTW 352
           + EG+      +   +++  ME        +++   + GL+++A      M  E D+  W
Sbjct: 530 VMEGRLWFDAMSRDFSIVPRME----HCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIW 585

Query: 353 NLLIAS 358
           + L+++
Sbjct: 586 SALLSA 591


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 193/577 (33%), Positives = 316/577 (54%), Gaps = 29/577 (5%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           +F  + ++  Y +   L +AR +FD M  ++VV+WN+M+ GYV++G  +EA  VF  M  
Sbjct: 95  LFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP- 153

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
                  +S   +L+A      L+E ++       +  + + +  + ++  Y K  +L D
Sbjct: 154 ---HKNSISWNGLLAAYVRSGRLEEARRLFE----SKSDWELISCNCLMGGYVKRNMLGD 206

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERI 383
           A  +F ++  RD+++WN +I+ Y Q G               DV   +++V  Y +   +
Sbjct: 207 ARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGML 266

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           D A++VF+ +  +  + +N ++A YA   R      LF +M      PNI SWN +I G+
Sbjct: 267 DEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPF----PNIGSWNIMISGY 322

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            +NG + +A+++F  M     Q + ++W  +I+G  QN    EA+    EM   G   + 
Sbjct: 323 CQNGDLAQARNLFDMMP----QRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNR 378

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
           +T  CALSAC D+A+L  G+ +HG ++R        +  +LV MY KCG I +A  VF  
Sbjct: 379 STFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQG 438

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
              K++  +N M++GYA HG   +AL +F+++   G+ PD IT   +L+ACSH GL + G
Sbjct: 439 VQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRG 498

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
            E F  M  D+ + P+ +H+ C+++LL R G L+EA  +I  MP +PDA   G+LL    
Sbjct: 499 TEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASR 558

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
                EL E  +E + ++EP N G YV LSN YAASGRW +VS++R  M++ G++K PG 
Sbjct: 559 IHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGY 618

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           SW+++  ++H F   D  HP+   IYA L  L + ++
Sbjct: 619 SWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMK 655



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 197/413 (47%), Gaps = 47/413 (11%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++  YA+   L  A RLF    V++VF+W A++    + G+ ++A   F EM +      
Sbjct: 225 MISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSY 284

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF--VASSLIDMYGKC--GDLEEAR 237
           N ++          G+  + R   G  L   F+   F  + S  I + G C  GDL +AR
Sbjct: 285 NVMIA---------GYAQYKRMDMGREL---FEEMPFPNIGSWNIMISGYCQNGDLAQAR 332

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
            +FD M  R+ V+W ++I GY QNGL EEA+ +  EM  +G    R +    LSA A++ 
Sbjct: 333 NLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIA 392

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
           AL+ GKQ H   V  G E   ++G++++  Y K G +++A  VF  +  +DIV+WN ++A
Sbjct: 393 ALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLA 452

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGR 413
            Y + G                      A  VF S+I      D +    +L+A +  G 
Sbjct: 453 GYARHGFG------------------RQALTVFESMITAGVKPDEITMVGVLSACSHTGL 494

Query: 414 SGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
           +   +  F+ M  + GI+PN   +  +I    R G + EA+++   ++++  +P+  TW 
Sbjct: 495 TDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNL---IRNMPFEPDAATWG 551

Query: 473 TLI--SGLTQN-SCGNEA--ILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
            L+  S +  N   G +A  ++F  E   +G+    + +  A     DV+ +R
Sbjct: 552 ALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMR 604



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 106/246 (43%), Gaps = 12/246 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+  ++     EA+++L EMK     +    +   L  C     +  G+Q+H ++++ G 
Sbjct: 350 IAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTG- 408

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            + +   V   LV  Y KC  +D A  +F  ++ K++ SW  ++    R G   +AL  F
Sbjct: 409 -YEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVF 467

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDGCVFVASSLIDMYGK 229
             M   GV PD   +  VL AC   G    G    H      G        + +ID+ G+
Sbjct: 468 ESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGR 527

Query: 230 CGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG---LNEEAIRVFYEMTLEGVEPTRVS 285
            G LEEA+ +   M    +   W +++     +G   L E+A  + ++M     EP    
Sbjct: 528 AGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKM-----EPHNSG 582

Query: 286 VTSILS 291
           +  +LS
Sbjct: 583 MYVLLS 588



 Score = 46.6 bits (109), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 105/239 (43%), Gaps = 22/239 (9%)

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI-VTSLVDMYAKCGNIHQAKR 559
           P T   T A+S       +RNG       +   + L   +   +++  Y +      A+ 
Sbjct: 31  PHTVKCTKAIST-----HMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARD 85

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           +FD  P K+L  +N M++GYA +    +A  LF ++ +K    D +++  +L+    +G 
Sbjct: 86  LFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEK----DVVSWNAMLSGYVRSGH 141

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           V+E  ++F  M   + +      +  ++    R G L+EA R+  +   D +      L+
Sbjct: 142 VDEARDVFDRMPHKNSIS-----WNGLLAAYVRSGRLEEARRLFES-KSDWELISCNCLM 195

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
              VK N    A  + +   Q+   +  ++  + + YA  G   ++SQ R + +E  +R
Sbjct: 196 GGYVKRNMLGDARQLFD---QIPVRDLISWNTMISGYAQDG---DLSQARRLFEESPVR 248


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 195/573 (34%), Positives = 324/573 (56%), Gaps = 33/573 (5%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           +I  Y +  +L +AR++F+ M  R+V +WN+++ GY QNG  ++A RVF  M     E  
Sbjct: 127 MIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMP----EKN 182

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS--SIINFYSKVGLLEDAEVV 340
            VS  ++LSA      L+E        V+ G   +  L S   ++  + K   + +A   
Sbjct: 183 DVSWNALLSAYVQNSKLEE------ACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQF 236

Query: 341 FSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAK 387
           F  M  RD+V+WN +I  Y Q+G+              DV   +++V  Y +   ++ A+
Sbjct: 237 FDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEAR 296

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
           ++F+ +  R+ V WN +LA Y    R   A  LF  M       N+ +WN++I G+ + G
Sbjct: 297 ELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCR----NVSTWNTMITGYAQCG 352

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
           +++EAK++F +M     + + ++W  +I+G +Q+    EA+  F  M   G + + ++ +
Sbjct: 353 KISEAKNLFDKMP----KRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFS 408

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
            ALS C DV +L  G+ +HG L++        +  +L+ MY KCG+I +A  +F     K
Sbjct: 409 SALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK 468

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           ++  +N MI+GY+ HG   EAL  F++++++G+ PD  T   +L+ACSH GLV++G + F
Sbjct: 469 DIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 528

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             M  D+ V+P+ +H+ C+V+LL R G L+EA  ++  MP +PDA I G+LL        
Sbjct: 529 HTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGN 588

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
           TELAE  ++ +  +EP+N G YV LSN YA+SGRW +V ++R  M++KG++K PG SWI+
Sbjct: 589 TELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 648

Query: 748 IGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           I  + H F   D  HP+ +EI+A L  L + ++
Sbjct: 649 IQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMK 681



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 163/318 (51%), Gaps = 17/318 (5%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN      ++  YA+C  +  A  LF ++  ++  SWAA+I    + G S +AL  FV M
Sbjct: 336 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLM 395

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           + +G   +     + L  C  +  +  G+ +HG ++K G++   FV ++L+ MY KCG +
Sbjct: 396 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 455

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           EEA  +F  M  +++V+WN+MI GY ++G  EEA+R F  M  EG++P   ++ ++LSA 
Sbjct: 456 EEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSAC 515

Query: 294 ANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVT 351
           ++   +D+G+Q  H +    G+  ++   + +++   + GLLE+A  +   M  E D   
Sbjct: 516 SHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAI 575

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
           W  L+ +    G ++  +A +  D     E  ++   V  S +             YA  
Sbjct: 576 WGTLLGASRVHGNTE--LAETAADKIFAMEPENSGMYVLLSNL-------------YASS 620

Query: 412 GRSGEASRLFYQMQLEGI 429
           GR G+  +L  +M+ +G+
Sbjct: 621 GRWGDVGKLRVRMRDKGV 638



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 126/507 (24%), Positives = 219/507 (43%), Gaps = 89/507 (17%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SY   IS   +  +   A  L  EM  R+       +  +++G V  R++   +++  R+
Sbjct: 92  SYNAMISGYLRNGEFELARMLFDEMPERDLVS----WNVMIKGYVRNRNLGKARELFERM 147

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            +      R+      ++  YA+   +D A R+F R+  KN  SW A++    +    E+
Sbjct: 148 PE------RDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEE 201

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC----VFVAS 221
           A + F        S +N+ L  V   C   G+V   + V        FD      V   +
Sbjct: 202 ACVLFG-------SRENWAL--VSWNCLLGGFVKKKKIVEARQF---FDSMKVRDVVSWN 249

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           ++I  Y + G+++EAR++FD     +V  W +M+ GY+QN + EEA  +F  M     E 
Sbjct: 250 TIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMP----ER 305

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV-LGSSIINFYSKVGLLEDAEVV 340
             VS  ++L+     + ++  K+   V     M   NV   +++I  Y++ G + +A+ +
Sbjct: 306 NEVSWNAMLAGYVQGERVEMAKELFDV-----MPCRNVSTWNTMITGYAQCGKISEAKNL 360

Query: 341 FSRMVERDIVTWNLLIASYVQSGQS------------------------------DVV-- 368
           F +M +RD V+W  +IA Y QSG S                              DVV  
Sbjct: 361 FDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVAL 420

Query: 369 --------------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                               V ++++ MY KC  I+ A  +F  +  +D+V WNT++A Y
Sbjct: 421 ELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGY 480

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPN 467
           +  G   EA R F  M+ EG+ P+  +  +V+      G +++ +  F  M Q  GV+PN
Sbjct: 481 SRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPN 540

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEM 494
              +  ++  L +     EA    + M
Sbjct: 541 SQHYACMVDLLGRAGLLEEAHNLMKNM 567



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 154/339 (45%), Gaps = 43/339 (12%)

Query: 348 DIVTWNLLIASYVQSGQS-------------DVVVASSIVDMYAKCERIDNAKQVFNSII 394
           DI  WN+ I+SY+++G+                V  ++++  Y +    + A+ +F+ + 
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMP 117

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
            RD+V WN ++  Y      G+A  LF +M       ++ SWN+++ G+ +NG +++A+ 
Sbjct: 118 ERDLVSWNVMIKGYVRNRNLGKARELFERMP----ERDVCSWNTILSGYAQNGCVDDARR 173

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F +M     + N ++W  L+S   QNS   EA + F       +     +  C L    
Sbjct: 174 VFDRMP----EKNDVSWNALLSAYVQNSKLEEACVLFGSRENWAL----VSWNCLLGGFV 225

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
               +   R     +   D+     I+T     YA+ G I +A+++FD SP  ++  + A
Sbjct: 226 KKKKIVEARQFFDSMKVRDVVSWNTIITG----YAQNGEIDEARQLFDESPVHDVFTWTA 281

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           M+SGY  + +  EA  LF  + ++    + +++  +L        V    ELF       
Sbjct: 282 MVSGYIQNRMVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKELF------- 330

Query: 635 QVKP--SMEHFGCVVNLLSRCGNLDEALRVILTMPC-DP 670
            V P  ++  +  ++   ++CG + EA  +   MP  DP
Sbjct: 331 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 369


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 213/671 (31%), Positives = 343/671 (51%), Gaps = 56/671 (8%)

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +N  SW  +I    R G   +AL  +  M ++G++P NF L +VL ACGA+  +  GR  
Sbjct: 4   RNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRC 63

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HG  +KVG DG  FV + L+ MY KCG + +A ++FDGM + N V++ +M+ G  Q G  
Sbjct: 64  HGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAV 123

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE--------GKQAHAVAVINGMEL 316
           ++A+R+F  M+  G+    V+V+S+L A A   A D          +  HA+ V  G   
Sbjct: 124 DDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGS 183

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------- 363
           D  +G+S+++ Y+K   +++A  VF  +    IV+WN+LI  Y Q G             
Sbjct: 184 DQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQ 243

Query: 364 ----QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
               + + V  S+++    K   + +A+ +F+ I    V  WNTLL+ Y       E   
Sbjct: 244 ESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETID 303

Query: 420 LFYQMQLEGISPN------IISWNSVILGFLRNGQMNEAK-------DMF---------- 456
           LF +MQ + + P+      I+S  S +  F    Q++ A        DMF          
Sbjct: 304 LFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYS 363

Query: 457 --------LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
                   L + ++  + +++ W ++ISGL  +S   EA  F ++M E G+ P+ ++   
Sbjct: 364 KCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYAS 423

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            ++ C  ++S+  GR +H  +++        +  SL+DMYAK GN+  A+  F+    K 
Sbjct: 424 MINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKN 483

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           L  +N MI GYA +G   +A+ LF+ +      PDS+TF  +L  CSH+GLV+E +  F 
Sbjct: 484 LVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFN 543

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
            M S++ + P +EH+ C+++ L+R     E   VI  MP   D  +   LL+ CV  +  
Sbjct: 544 SMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHHNA 603

Query: 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           EL E+ ++HL +L+P NP  YV LSN YA  GR  + S VR +M  +G+ K  G SW+  
Sbjct: 604 ELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNH 663

Query: 749 GEELHVFVACD 759
            +    F+  D
Sbjct: 664 KDGSRAFMVAD 674



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 146/589 (24%), Positives = 263/589 (44%), Gaps = 81/589 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+++++     EA+++   M              +L  C     +  G++ H   +K G 
Sbjct: 13  IAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVG- 71

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +++VE  L+  Y KC ++  A RLF  +   N  S+ A++G   + G  + AL  F
Sbjct: 72  -LDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLF 130

Query: 171 VEMQEDGVSPDNFVLPNVLKACG--------ALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
             M   G+  D   + +VL AC             +   +++H  V++ GF     V +S
Sbjct: 131 ARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNS 190

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L+D+Y K   ++EA KVF+ + + ++V+WN +I GY Q G  E A+ V   M   G EP 
Sbjct: 191 LVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPN 250

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVF 341
            V+ +++L++   + A D      A A+ + +   +V   +++++ Y +  L ++   +F
Sbjct: 251 EVTYSNMLASC--IKARD---VPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLF 305

Query: 342 SRM----VERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKC 380
            RM    V+ D  T  ++++S  + G                  +D+ VAS ++D+Y+KC
Sbjct: 306 RRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKC 365

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
            ++  A  +FN +  RDVV WN++++  A    S EA     QM+  G+ P   S+ S+I
Sbjct: 366 GQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMI 425

Query: 441 -----------------------------LG------FLRNGQMNEAKDMFLQMQSLGVQ 465
                                        +G      + ++G M++A+  F  M    + 
Sbjct: 426 NLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCM----IV 481

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            NL+ W  +I G  QN  G +A+  F+ ML T  KP + T    L+ C+    +    A+
Sbjct: 482 KNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVD--EAV 539

Query: 526 HGYLIRHDLCLPTPIV---TSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
             +         TP+V   T L+D  A+     + + V    P K+ P+
Sbjct: 540 TFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPI 588



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 217/487 (44%), Gaps = 63/487 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           YG+L  GC Y+R M    ++   + ++G  F  NE   + ++    K   +  A  +F +
Sbjct: 226 YGQL--GC-YERAM----EVLEFMQESG--FEPNEVTYSNMLASCIKARDVPSARAMFDK 276

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +   +V +W  ++    +  L ++ +  F  MQ   V PD   L  +L +C  LG    G
Sbjct: 277 IPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELG 336

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + VH   +++     +FVAS LID+Y KCG +  A  +F+ M  R+VV WNSMI G   +
Sbjct: 337 KQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIH 396

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
            L+EEA     +M   G+ PT  S  S+++  A L ++ +G+Q HA  + +G + +  +G
Sbjct: 397 SLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVG 456

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
            S+I+ Y+K G ++DA + F+ M+ +++V WN +I  Y Q+G  +               
Sbjct: 457 CSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGE--------------- 501

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
                                             +A  LF  M      P+ +++ +V+ 
Sbjct: 502 ----------------------------------KAVELFEYMLTTKQKPDSVTFIAVLT 527

Query: 442 GFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
           G   +G ++EA   F  M+S  G+ P +  +T LI  L + +   E      +M     K
Sbjct: 528 GCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKM---PYK 584

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
                    L+AC    +   G     +L R D   P+P V  L ++YA  G    A  V
Sbjct: 585 DDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVL-LSNIYATLGRHGDASAV 643

Query: 561 FDISPSK 567
             +  S+
Sbjct: 644 RALMSSR 650



 Score = 46.6 bits (109), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 11/108 (10%)

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE-- 622
           P +    +N +I+  A  G   EAL +++ + Q+G+ P + T  ++L+AC     +++  
Sbjct: 2   PDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGR 61

Query: 623 ---GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
              GL + VG+     V+  +      + + ++CG++ +A+R+   MP
Sbjct: 62  RCHGLAVKVGLDGHQFVENGL------LGMYTKCGSVADAVRLFDGMP 103


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 212/660 (32%), Positives = 331/660 (50%), Gaps = 98/660 (14%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           GRAVHG +++ G   C+  A+ L++ Y KCG L +A  +F+ +I ++VV+WNS+I GY Q
Sbjct: 33  GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQ 92

Query: 261 NG---LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           NG    +   +++F EM  + + P   ++  I  A ++L +   G+QAHA+ V      D
Sbjct: 93  NGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGD 152

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW--------------------NLLIA 357
             + +S++  Y K GL+ED   VF+ M ER+  TW                    NL + 
Sbjct: 153 IYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLR 212

Query: 358 SYVQSGQSD----------------------------------VVVASSIVDMYAKCERI 383
              +   SD                                  V +++++V MY+KCE +
Sbjct: 213 EKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESL 272

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI--- 440
           + A ++F+S   R+ + W+ ++  Y+  G S EA +LF +M   GI P+  +   V+   
Sbjct: 273 NEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNAC 332

Query: 441 ------------------LGFLRN--------------GQMNEAKDMFLQMQSLGVQPNL 468
                             LGF R+              G + +A+  F  +Q    + ++
Sbjct: 333 SDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQ----ERDV 388

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
             WT+LISG  QNS   EA++ ++ M   GI P+  T+   L AC+ +A+L  G+ +HG+
Sbjct: 389 ALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGH 448

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
            I+H   L  PI ++L  MY+KCG++     VF  +P+K++  +NAMISG + +G   EA
Sbjct: 449 TIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEA 508

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH-QVKPSMEHFGCVV 647
           L LF+ +  +G++PD +TF NI++ACSH G V  G   +  M SD   + P ++H+ C+V
Sbjct: 509 LELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGW-FYFNMMSDQIGLDPKVDHYACMV 567

Query: 648 NLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707
           +LLSR G L EA   I +   D    +   LLS C    + EL  Y  E L+ L      
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESS 627

Query: 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEE 767
            YV LS  Y A GR  +V +V   M+  G+ K  GCSWI++  + HVFV  D  HP  EE
Sbjct: 628 TYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIEE 687



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 3/192 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS   +     EA+ L   MK             +L+ C     +  G+Q+H   +K+G 
Sbjct: 395 ISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHG- 453

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F     + + L   Y+KC +L+  + +F R   K+V SW A+I      G  ++AL  F
Sbjct: 454 -FGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELF 512

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL-KVGFDGCVFVASSLIDMYGK 229
            EM  +G+ PD+    N++ AC   G+V  G      +  ++G D  V   + ++D+  +
Sbjct: 513 EEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSR 572

Query: 230 CGDLEEARKVFD 241
            G L+EA++  +
Sbjct: 573 AGQLKEAKEFIE 584



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 14/181 (7%)

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
            +T + P T+T+   L+  +   +L  GRA+HG +IR            LV+ YAKCG +
Sbjct: 6   FQTELNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKL 65

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHG---LAVEALALFKNLQQKGIDPDSITFTNIL 611
            +A  +F+    K++  +N++I+GY+ +G    +   + LF+ ++ + I P++ T   I 
Sbjct: 66  AKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIF 125

Query: 612 NA-----CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
            A      S  G     L + +  F D  V  S+      V +  + G +++ L+V   M
Sbjct: 126 KAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSL------VGMYCKAGLVEDGLKVFAYM 179

Query: 667 P 667
           P
Sbjct: 180 P 180


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 303/572 (52%), Gaps = 31/572 (5%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +   ++  GF    ++   L+ +      +  AR++FD +   N+  WNSM  GY Q+  
Sbjct: 120 IQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSES 179

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
             E + +F++M    + P   +   +L +   ++AL EG+Q H   +  G   +  +G++
Sbjct: 180 YREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTT 239

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
           +I+ YS  G + DA  +F  M ER++V W  +I  Y+ S  +D+V A  + D+  +    
Sbjct: 240 LIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILS--ADLVSARRLFDLAPE---- 293

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN--IISWNSVIL 441
                       RDVVLWN +++ Y + G   EA +LF +M      PN  ++ WN+V+ 
Sbjct: 294 ------------RDVVLWNIMVSGYIEGGDMVEARKLFXEM------PNRDVMFWNTVLK 335

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIK 500
           G+  NG +   + +F +M     + N+ +W  LI G   N    E +  F+ ML E+ + 
Sbjct: 336 GYATNGNVEALEGLFEEMP----ERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVP 391

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P+  T+   LSAC  + +L  G+ +H Y     L     +  +L+DMYAKCG I  A  V
Sbjct: 392 PNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISV 451

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F    +K+L  +N +I G AMH    +AL LF  ++  G  PD ITF  IL AC+H GLV
Sbjct: 452 FRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLV 511

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            +G   F  M  D+ + P +EH+GC+V++L+R G L++A   +  MP + D  I   LL 
Sbjct: 512 EDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLG 571

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C      ELAE   + L++LEP NP NYV LSN Y  +GRW +V++++  M++ G +K 
Sbjct: 572 ACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKL 631

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           PGCS I++ + +  F + D  HP+ EEIY  L
Sbjct: 632 PGCSLIEVNDAVVEFYSLDERHPQIEEIYGVL 663



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 201/454 (44%), Gaps = 72/454 (15%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
            QI A+I+ NG  F  NEY+  KLV   A    +  A +LF ++   N+  W ++     
Sbjct: 118 HQIQAQIIANG--FQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYA 175

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +     + +  F +M+   + P+ F  P VLK+CG +  +  G  VH +++K GF G  F
Sbjct: 176 QSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPF 235

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V ++LIDMY   G + +A K+F  M  RNVVAW SMI GY+ +     A R+F       
Sbjct: 236 VGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLF------D 289

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDA 337
           + P R  V   +  S  ++    G    A  +   M   D +  ++++  Y+  G +E  
Sbjct: 290 LAPERDVVLWNIMVSGYIEG---GDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEAL 346

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSG---------------------------------- 363
           E +F  M ER+I +WN LI  Y  +G                                  
Sbjct: 347 EGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACAR 406

Query: 364 -------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                              + +V V ++++DMYAKC  I+NA  VF  +  +D++ WNTL
Sbjct: 407 LGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTL 466

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG- 463
           +   A   R  +A  LF+QM+  G  P+ I++  ++        M   +D F   QS+  
Sbjct: 467 IGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACT---HMGLVEDGFAYFQSMAD 523

Query: 464 ---VQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
              + P +  +  ++  L +     +A  F ++M
Sbjct: 524 DYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKM 557



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 186/420 (44%), Gaps = 50/420 (11%)

Query: 73  RNFQIGPE----IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK 128
           R F + PE    ++  ++ G +   DM   +++    + N D    N  ++      YA 
Sbjct: 286 RLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXE-MPNRDVMFWNTVLKG-----YAT 339

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPN 187
              ++    LF  +  +N+FSW A+IG     GL  + L  F  M  E  V P++  L  
Sbjct: 340 NGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVT 399

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           VL AC  LG +  G+ VH Y    G  G V+V ++L+DMY KCG +E A  VF GM  ++
Sbjct: 400 VLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKD 459

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           +++WN++I G   +    +A+ +F++M   G +P  ++   IL A  ++  +++G     
Sbjct: 460 LISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG----- 514

Query: 308 VAVINGMELDNVLGSSI------INFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYV 360
            A    M  D ++   I      ++  ++ G LE A     +M VE D V W  L+ +  
Sbjct: 515 FAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGA-- 572

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
                          +Y   E  + A Q    +  ++   +  L   Y D GR  + +RL
Sbjct: 573 -------------CRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARL 619

Query: 421 FYQMQLEGISP----NIISWNSVILGFL----RNGQMNEA----KDMFLQMQSLGVQPNL 468
              M+  G       ++I  N  ++ F     R+ Q+ E     + +   ++S G  P+L
Sbjct: 620 KVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPDL 679



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 159/320 (49%), Gaps = 20/320 (6%)

Query: 40  YESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQ 99
           + S+++ Y       ++ +  RE V L  +MK  + +     +  +L+ C     +  G+
Sbjct: 167 WNSMFRGY-------AQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGE 219

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           Q+H  ++K G  F  N +V T L+  Y+    +  A ++FC +  +NV +W ++I     
Sbjct: 220 QVHCFLIKCG--FRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMIN---- 273

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVF 218
            G    A +       D     + VL N++ +    G++  G  V    L     +  V 
Sbjct: 274 -GYILSADLVSARRLFDLAPERDVVLWNIMVS----GYIEGGDMVEARKLFXEMPNRDVM 328

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
             ++++  Y   G++E    +F+ M  RN+ +WN++I GY  NGL  E +  F  M  E 
Sbjct: 329 FWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSES 388

Query: 279 -VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            V P   ++ ++LSA A L ALD GK  H  A  +G++ +  +G+++++ Y+K G++E+A
Sbjct: 389 DVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENA 448

Query: 338 EVVFSRMVERDIVTWNLLIA 357
             VF  M  +D+++WN LI 
Sbjct: 449 ISVFRGMDTKDLISWNTLIG 468


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 210/666 (31%), Positives = 339/666 (50%), Gaps = 84/666 (12%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           ++L+AC     +   + +H + LK   +    V   L  +Y  C  +  AR++FD +   
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           +V+ WN +I  Y  NG  + AI +++ M   GV P + +   +L A + L A+++G + H
Sbjct: 73  SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
           + A + G+E D  + +++++FY+K G+L +A+ +FS M  RD+V WN +IA     G  D
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD 192

Query: 367 ----------------------------------------------------VVVASSIV 374
                                                               VVV + ++
Sbjct: 193 DAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLL 252

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL-EGISPNI 433
           DMYAKC+ +  A+++F+ + +R+ V W+ ++  Y       EA  LF QM L + + P  
Sbjct: 253 DMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTP 312

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLG------------------------------ 463
           ++  SV+    +   ++  + +   +  LG                              
Sbjct: 313 VTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDE 372

Query: 464 VQP-NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
           + P + ++++ ++SG  QN     A+  F+ M  +GI P  TT+   L AC+ +A+L++G
Sbjct: 373 MNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
              HGYLI       T I  +L+DMY+KCG I  A+ VF+     ++  +NAMI GY +H
Sbjct: 433 FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIH 492

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           GL +EAL LF +L   G+ PD ITF  +L++CSH+GLV EG   F  M  D  + P MEH
Sbjct: 493 GLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEH 552

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
             C+V++L R G +DEA   I  MP +PD  I  +LLS C      EL E +S+ +  L 
Sbjct: 553 CICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG 612

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           P++ GN+V LSN Y+A+GRW++ + +R   K+ GL+K PGCSWI+I   +H FV  D+SH
Sbjct: 613 PESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 672

Query: 763 PKTEEI 768
            +  +I
Sbjct: 673 LQLSQI 678



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 161/306 (52%), Gaps = 13/306 (4%)

Query: 60  IREAVDLLTEMKCRN-FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           ++EA++L  +M  ++     P   G +L+ C    D+  G+++H  I+K G     +  +
Sbjct: 292 MKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVL--DILL 349

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
              L+  YAKC  +D A R F  +  K+  S++AI+    + G +  AL  F  MQ  G+
Sbjct: 350 GNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGI 409

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
            PD   +  VL AC  L  +  G   HGY++  GF     + ++LIDMY KCG +  AR+
Sbjct: 410 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFARE 469

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VF+ M   ++V+WN+MI+GY  +GL  EA+ +F+++   G++P  ++   +LS+ ++   
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGL 529

Query: 299 LDEGK-----QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTW 352
           + EG+      +   +++  ME        +++   + GL+++A      M  E D+  W
Sbjct: 530 VMEGRLWFDAMSRDFSIVPRME----HCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIW 585

Query: 353 NLLIAS 358
           + L+++
Sbjct: 586 SALLSA 591


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 218/683 (31%), Positives = 361/683 (52%), Gaps = 59/683 (8%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++  Y     ++ A  LF R+  +N  SW  +I     +    +A   F  M  +G++P+
Sbjct: 163 MLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPE 222

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK-CGDLEEARKVF 240
              L +VL A   LG  G   ++H  V K GF+  V V +++++ Y K    L+ A K F
Sbjct: 223 QPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFF 282

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           +GM ARN   W+++I    Q G  ++A  V+    L+ V P+R   TS+L+  A    +D
Sbjct: 283 EGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PSR---TSMLTGLARYGRID 338

Query: 301 EGK----QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
           + K    Q H   V++         +++I  Y +  ++++AE +F+RM  R+ ++W  +I
Sbjct: 339 DAKILFDQIHEPNVVSW--------NAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMI 390

Query: 357 ASYVQSGQSDVVVAS--------------SIVDMYAKC---ERIDNAKQV---------- 389
           A Y ++G+S+  + S              S+   +  C   E ++  KQV          
Sbjct: 391 AGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQ 450

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           FNS +       N L+  Y      G   ++F +M ++    + +S+NS +   ++N   
Sbjct: 451 FNSYVC------NALITLYGKYRSIGSVRQIFDRMTVK----DTVSYNSFMSALVQNNLF 500

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           +EA+D+F  M S    P++++WTT+IS   Q   GNEA+  F+ ML     P+   +T  
Sbjct: 501 DEARDVFNNMPS----PDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTIL 556

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L    ++ + + G+ IH   I+  +     +  +LV MY KC +    K VFD    +++
Sbjct: 557 LGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSADSLK-VFDSMEERDI 615

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +N +I+GYA HGL  EA+ +++ +   G+ P+ +TF  +L+ACSH+GLV+EG + F  
Sbjct: 616 FTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKS 675

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M SD+ + P +EH+ C+V+LL R G++  A   I  MP +PD+ I  +LL  C      E
Sbjct: 676 MSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVE 735

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           +    +E L  +EP N GNYV LSN Y++ G W+EV++VR +MKE+G+ K+PGCSW+QI 
Sbjct: 736 IGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIK 795

Query: 750 EELHVFVACDRSHPKTEEIYATL 772
            ++H FV  D  H + + IYATL
Sbjct: 796 NKMHSFVTGDEEHEQIQNIYATL 818



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 141/541 (26%), Positives = 256/541 (47%), Gaps = 78/541 (14%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           L  A  +F  +  +++ +W ++I   C  G+ +           D +S  N     +L +
Sbjct: 49  LHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAG-----RSLADAISGGNLRTGTILLS 103

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGC----VFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
                  G+ RA      +  FDG         ++++  Y + GD+  ARK+FD M +R+
Sbjct: 104 -------GYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRD 156

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMT-------------------------------L 276
           V +WN+M+ GY  + L EEA  +F  M                                 
Sbjct: 157 VSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLC 216

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK-VGLLE 335
           EG+ P + ++ S+LSA  +L      +  H +    G E D V+G++I+N Y+K V +L+
Sbjct: 217 EGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLD 276

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
            A   F  M  R+  TW+ +IA+  Q+G                  RID+A  V+    L
Sbjct: 277 SAVKFFEGMAARNEYTWSTIIAALSQAG------------------RIDDAFAVYQRDPL 318

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
           + V    ++L   A  GR  +A  LF Q+      PN++SWN++I G+++N  ++EA+D+
Sbjct: 319 KSVPSRTSMLTGLARYGRIDDAKILFDQIH----EPNVVSWNAMITGYMQNEMVDEAEDL 374

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +M       N I+W  +I+G  +N    +A++  Q +   G+ PS +++T +  AC++
Sbjct: 375 FNRMPFR----NTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSN 430

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           + +L  G+ +H   ++      + +  +L+ +Y K  +I   +++FD    K+   YN+ 
Sbjct: 431 IEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSF 490

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           +S    + L  EA  +F N+      PD +++T I++AC+ A   NE +E+F  M  + +
Sbjct: 491 MSALVQNNLFDEARDVFNNMPS----PDVVSWTTIISACAQADQGNEAVEIFRSMLHERE 546

Query: 636 V 636
           +
Sbjct: 547 L 547



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 179/417 (42%), Gaps = 82/417 (19%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           S+ I   G+ G L EAR+VFD M  R+++AWNSMI  Y  NG+ +               
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPD--------------- 81

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
                     +  +  DA+  G       +++G              Y++ G + DA  V
Sbjct: 82  ----------AGRSLADAISGGNLRTGTILLSG--------------YARAGRVRDARRV 117

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  M  R+ V WN ++  YVQ+G                   I  A+++F+++  RDV  
Sbjct: 118 FDGMGVRNTVAWNAMVTCYVQNGD------------------ITLARKLFDAMPSRDVSS 159

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           WNT+L  Y       EA  LF +M       N +SW  +I G++   Q   A DMF  M 
Sbjct: 160 WNTMLTGYCHSQLMEEARNLFERMP----ERNGVSWTVMISGYVLIEQHGRAWDMFRTML 215

Query: 461 SLGV---QPNLITWTTLISGLTQNSCGNEAILFFQEML--ETGIKPSTTTITCALSACT- 514
             G+   QPNL++  + +  L     G   IL    +L  +TG +      T  L+  T 
Sbjct: 216 CEGMTPEQPNLVSVLSAVRHL-----GKPGILESIHVLVHKTGFERDVVVGTAILNGYTK 270

Query: 515 DVASLRNG-RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
           DV  L +  +   G   R++    T I+ +L    ++ G I  A  V+   P K +P   
Sbjct: 271 DVNMLDSAVKFFEGMAARNEYTWST-IIAAL----SQAGRIDDAFAVYQRDPLKSVPSRT 325

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
           +M++G A +G   +A  LF  + +    P+ +++  ++       +V+E  +LF  M
Sbjct: 326 SMLTGLARYGRIDDAKILFDQIHE----PNVVSWNAMITGYMQNEMVDEAEDLFNRM 378


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 208/619 (33%), Positives = 324/619 (52%), Gaps = 62/619 (10%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VF  +SL+ M+ K G L +AR VF  M  R+ V+W  M+VG  + G   EAI+   +MT 
Sbjct: 98  VFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTA 157

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           +G  PT+ ++T++LS+ A   A   G++ H+  V  G+     + +S++N Y K G  E 
Sbjct: 158 DGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSET 217

Query: 337 AEVVFSRMV-------------------------------ERDIVTWNLLIASYVQSG-- 363
           A  VF RM                                +R IV+WN +IA Y Q+G  
Sbjct: 218 ATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLD 277

Query: 364 ----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT---- 403
                             D    +S++   A    +   KQV ++ ILR  + +N+    
Sbjct: 278 AKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQV-HAYILRTEMAYNSQVTN 336

Query: 404 -LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
            L++ YA  G    A R+  Q     +  N+IS+ +++ G+++ G M  A++MF  M + 
Sbjct: 337 ALISTYAKSGSVENARRIMDQSMETDL--NVISFTALLEGYVKIGDMESAREMFGVMNNR 394

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
            V    + WT +I G  QN   +EAI  F+ M+  G +P++ T+   LS C  +A L  G
Sbjct: 395 DV----VAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG 450

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAM 581
           + IH   IR  L   + +  +++ MYA+ G+   A+R+FD +   KE   + +MI   A 
Sbjct: 451 KQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQ 510

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HG   EA+ LF+ + + G++PD IT+  +L+ACSHAG VNEG   +  + ++HQ+ P M 
Sbjct: 511 HGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMS 570

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+ C+V+LL+R G   EA   I  MP +PDA   GSLLS C      ELAE  +E LL +
Sbjct: 571 HYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSI 630

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           +P+N G Y A++N Y+A GRW++ +++    KEK +RK  G SW  I  ++HVF A D  
Sbjct: 631 DPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVV 690

Query: 762 HPKTEEIYATLALLGMHVR 780
           HP+ + +YA  A +   ++
Sbjct: 691 HPQRDAVYAMAARMWEEIK 709



 Score =  228 bits (582), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 182/687 (26%), Positives = 296/687 (43%), Gaps = 164/687 (23%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNG------------DFFA---------------- 113
           Y  LLQ C    +   G+ IHAR +K G             ++                 
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 114 -------RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA-IIGLNCRVGLSEK 165
                  RN +    L+  +AK   L  A  +F  +  ++  SW   ++GLN R G   +
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLN-RAGRFGE 147

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+   ++M  DG +P  F L NVL +C        GR VH +V+K+G   CV VA+S+++
Sbjct: 148 AIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLN 207

Query: 226 MYGKCGDLEEARKVFDGMIARNV-------------------------------VAWNSM 254
           MYGKCGD E A  VF+ M  R+V                               V+WN+M
Sbjct: 208 MYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAM 267

Query: 255 IVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           I GY QNGL+ +A+++F  M  E  + P   ++TS+LSA ANL  +  GKQ HA  +   
Sbjct: 268 IAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE 327

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373
           M  ++ + +++I+ Y+K G +E+A  +  + +E D+                +V+  +++
Sbjct: 328 MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL----------------NVISFTAL 371

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           ++ Y K   +++A+++F  +  RDVV W  ++  Y   GR+ EA  LF  M   G  PN 
Sbjct: 372 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNS 431

Query: 434 ISW-----------------------------------NSVILGFLRNGQMNEAKDMFLQ 458
            +                                    N++I  + R+G    A+ MF Q
Sbjct: 432 YTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQ 491

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
              +  +   ITWT++I  L Q+  G EA+  F+EML  G++P   T    LSAC+    
Sbjct: 492 ---VCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGF 548

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           +  G+                        Y +  N HQ      I+P  E+  Y  M+  
Sbjct: 549 VNEGK----------------------RYYDQIKNEHQ------IAP--EMSHYACMVDL 578

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC---SHAGLVNEGLELFVGMFSDHQ 635
            A  GL  EA    + +    ++PD+I + ++L+AC    +A L     E  + +  ++ 
Sbjct: 579 LARAGLFSEAQEFIRRMP---VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNS 635

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRV 662
                  +  + N+ S CG   +A R+
Sbjct: 636 GA-----YSAIANVYSACGRWSDAARI 657



 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 143/552 (25%), Positives = 245/552 (44%), Gaps = 95/552 (17%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +  L++  +  EA+  L +M    F         +L  C   +    G+++H+ +
Sbjct: 131 SWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFV 190

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV----- 160
           +K G        V   ++  Y KC   + A+ +F R+ V++V SW A++ LN  +     
Sbjct: 191 VKLG--LGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDL 248

Query: 161 --------------------------GLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACG 193
                                     GL  KAL  F  M  E  ++PD F + +VL AC 
Sbjct: 249 AESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACA 308

Query: 194 ALGWVGFGRAVHGYVLKVGF---------------------------------DGCVFVA 220
            LG V  G+ VH Y+L+                                    D  V   
Sbjct: 309 NLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISF 368

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L++ Y K GD+E AR++F  M  R+VVAW +MIVGY QNG N+EAI +F  M   G E
Sbjct: 369 TALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE 428

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P   ++ ++LS  A+L  LD GKQ H  A+ + +E  + + ++II  Y++ G    A  +
Sbjct: 429 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRM 488

Query: 341 FSRMVER-DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
           F ++  R + +TW  +I +  Q GQ +              E +   +++  + +  D +
Sbjct: 489 FDQVCWRKETITWTSMIVALAQHGQGE--------------EAVGLFEEMLRAGVEPDRI 534

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
            +  +L+A +  G   E  R + Q++ E  I+P +  +  ++    R G  +EA++   +
Sbjct: 535 TYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRR 594

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL----SAC- 513
           M    V+P+ I W +L+S    +     A L  +++L   I P+ +    A+    SAC 
Sbjct: 595 MP---VEPDAIAWGSLLSACRVHKNAELAELAAEKLLS--IDPNNSGAYSAIANVYSACG 649

Query: 514 --TDVASLRNGR 523
             +D A +   R
Sbjct: 650 RWSDAARIWKAR 661



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 171/353 (48%), Gaps = 26/353 (7%)

Query: 394 ILRDVVLWNTLLAAYADL-GRSG---EASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           +L    L N LL+ Y +  G +G   +A RLF ++ L     N+ +WNS++  F ++G++
Sbjct: 57  LLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLA--RRNVFTWNSLLSMFAKSGRL 114

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
            +A+ +F +M     + + ++WT ++ GL +     EAI    +M   G  P+  T+T  
Sbjct: 115 ADARGVFAEMP----ERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNV 170

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           LS+C    +   GR +H ++++  L    P+  S+++MY KCG+   A  VF+  P + +
Sbjct: 171 LSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSV 230

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +NAM+S     G    A +LF+++  + I    +++  ++   +  GL  + L+LF  
Sbjct: 231 SSWNAMVSLNTHLGRMDLAESLFESMPDRSI----VSWNAMIAGYNQNGLDAKALKLFSR 286

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNL------DEALRVILTMPCDPDAHIIGSLLSTCV 683
           M  +  + P  + F  + ++LS C NL       +    IL      ++ +  +L+ST  
Sbjct: 287 MLHESSMAP--DEF-TITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 684 KSNETELAEYISEHLLQLEPD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
           KS   E A  I +    +E D N  ++ AL   Y   G      ++  +M  +
Sbjct: 344 KSGSVENARRIMDQ--SMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR 394



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 195/424 (45%), Gaps = 63/424 (14%)

Query: 28  THLTKLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG 83
           THL ++  +++ +ES+      S+   I+  ++     +A+ L + M      + P+ + 
Sbjct: 241 THLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM-LHESSMAPDEFT 299

Query: 84  --ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASR---- 137
              +L  C    ++  G+Q+HA IL+     A N  V   L+  YAK  +++ A R    
Sbjct: 300 ITSVLSACANLGNVRIGKQVHAYILRTE--MAYNSQVTNALISTYAKSGSVENARRIMDQ 357

Query: 138 -----------------------------LFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
                                        +F  +  ++V +W A+I    + G +++A+ 
Sbjct: 358 SMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAID 417

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F  M   G  P+++ L  VL  C +L  + +G+ +H   ++   +    V++++I MY 
Sbjct: 418 LFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYA 477

Query: 229 KCGDLEEARKVFDGMIARN-VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
           + G    AR++FD +  R   + W SMIV   Q+G  EEA+ +F EM   GVEP R++  
Sbjct: 478 RSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYV 537

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLG--SSIINFYSKVGLLEDAEVVFSRM- 344
            +LSA ++   ++EGK+ +   + N  ++   +   + +++  ++ GL  +A+    RM 
Sbjct: 538 GVLSACSHAGFVNEGKRYYD-QIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP 596

Query: 345 VERDIVTW-NLLIASYVQSGQSDVVVA---------------SSIVDMYAKCERIDNAKQ 388
           VE D + W +LL A  V        +A               S+I ++Y+ C R  +A +
Sbjct: 597 VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAAR 656

Query: 389 VFNS 392
           ++ +
Sbjct: 657 IWKA 660


>gi|413946759|gb|AFW79408.1| hypothetical protein ZEAMMB73_086527 [Zea mays]
          Length = 865

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 215/636 (33%), Positives = 335/636 (52%), Gaps = 44/636 (6%)

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC-VFVASSLI 224
           A+  F EM+  GV+PD +     L ACG  G    G+AVH +  K G       V   L 
Sbjct: 157 AIAAFAEMRARGVAPDGYACARALHACGRAGAPREGQAVHAHAAKAGHVAAHPLVPGFLA 216

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG---VEP 281
            MY +  D+  AR+V +   A   VAWN ++    + GL ++A+ +   M   G     P
Sbjct: 217 GMYAESADVGAARRVLETEDA-PPVAWNVVVACCARLGLVDDALDLAERMARSGPVEASP 275

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVIN-----GMELDNVLGSSIINFYSKVGLLE- 335
           +  +  ++LS  A       G+   A  V+      G+  D+   SS++   + +GLL  
Sbjct: 276 SLATWNAVLSGCAR-----HGRDREAFGVVRSMLERGIPPDSSSMSSLLKSVASLGLLAH 330

Query: 336 --DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
             +A   F R                    + DV   ++ VDMYAKC R++ A++VF+++
Sbjct: 331 GMEAHCFFLR-----------------HRLEPDVYTGTAFVDMYAKCGRLEYAQKVFDTL 373

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
            LR++  WN+L+A Y++ G+   A  L  +M+   + P+I +WN +I G+  NG+ ++A 
Sbjct: 374 ELRNITTWNSLVAGYSNAGQFDHALDLVEEMKRNRLDPDITTWNGLISGYSMNGRSSQAV 433

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +  QM+++G+ PN+++WT+LISG   N    ++  FF EM +  ++PS  T++  L AC
Sbjct: 434 LLLRQMKAIGLTPNVVSWTSLISGSCHNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRAC 493

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIV-TSLVDMYAKCGNIHQAKRVFD-ISPSKELPV 571
             +A L  G+ +H + +R        +V T+L+DMY+K GN+  A R+F+ I   K L  
Sbjct: 494 AGLALLAKGKELHCFALRRRAYDRDMVVATALIDMYSKSGNLASATRIFERIQEEKNLVS 553

Query: 572 YNAMISGYAMHGLAVEALALFKNL------QQKGIDPDSITFTNILNACSHAGLVNEGLE 625
           +NAM++G A HG   EA+ALF ++         G+ PDSITFT +L AC    L+ EG +
Sbjct: 554 WNAMLTGLAAHGQGREAIALFDDMCSASAGAGAGLKPDSITFTALLTACRSMELITEGWD 613

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
            F  M S + V P++E++ C+V+LL+RCG LDEA   I   P    A + G+LL+ CV  
Sbjct: 614 YFDAMESRYGVTPTVENYACMVDLLARCGYLDEATDFINRSPFKSAASLWGALLTGCVVH 673

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
               LAE  +  L +LEP N  NY+ + + Y     ++E   ++  MK + L   PG SW
Sbjct: 674 GNLALAEAAARKLFKLEPYNSANYLQMVSLYEREQMFDEAESLKYAMKARALNTRPGWSW 733

Query: 746 IQIGEELHVF-VACDRSHPKTEEIYATLALLGMHVR 780
           IQI + +HVF V     HP T EIY  L  L + +R
Sbjct: 734 IQIEQSIHVFQVEGKPPHPDTAEIYQQLVRLVLQIR 769



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 141/590 (23%), Positives = 248/590 (42%), Gaps = 115/590 (19%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILK 107
           +++ L++ ++  +A+    EM+ R   + P+ Y     L  C        GQ +HA   K
Sbjct: 144 RVAMLAEAEEWGDAIAAFAEMRARG--VAPDGYACARALHACGRAGAPREGQAVHAHAAK 201

Query: 108 NGDF--------FARNEYVETKLV------------------VFYAKC-------DALDV 134
            G          F    Y E+  V                  V  A C       DALD+
Sbjct: 202 AGHVAAHPLVPGFLAGMYAESADVGAARRVLETEDAPPVAWNVVVACCARLGLVDDALDL 261

Query: 135 ASRLFCRLRVK---NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           A R+     V+   ++ +W A++    R G   +A      M E G+ PD+  + ++LK+
Sbjct: 262 AERMARSGPVEASPSLATWNAVLSGCARHGRDREAFGVVRSMLERGIPPDSSSMSSLLKS 321

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
             +LG +  G   H + L+   +  V+  ++ +DMY KCG LE A+KVFD +  RN+  W
Sbjct: 322 VASLGLLAHGMEAHCFFLRHRLEPDVYTGTAFVDMYAKCGRLEYAQKVFDTLELRNITTW 381

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           NS++ GY   G  + A+ +  EM    ++P   +   ++S  +       G+ + AV ++
Sbjct: 382 NSLVAGYSNAGQFDHALDLVEEMKRNRLDPDITTWNGLISGYSM-----NGRSSQAVLLL 436

Query: 312 N-----GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
                 G+  + V  +S+I+     G  ED+   F+ M ++D V             Q  
Sbjct: 437 RQMKAIGLTPNVVSWTSLISGSCHNGDYEDSFYFFNEM-QKDHV-------------QPS 482

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLF 421
           VV  S ++   A    +   K++    + R     D+V+   L+  Y+  G    A+R+F
Sbjct: 483 VVTMSVLLRACAGLALLAKGKELHCFALRRRAYDRDMVVATALIDMYSKSGNLASATRIF 542

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS------LGVQPNLITWTTLI 475
            ++Q E    N++SWN+++ G   +GQ  EA  +F  M S       G++P+ IT+T L+
Sbjct: 543 ERIQEE---KNLVSWNAMLTGLAAHGQGREAIALFDDMCSASAGAGAGLKPDSITFTALL 599

Query: 476 SGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           +         E   +F  M    G+ P+     C                          
Sbjct: 600 TACRSMELITEGWDYFDAMESRYGVTPTVENYAC-------------------------- 633

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP-VYNAMISGYAMHG 583
                    +VD+ A+CG + +A    + SP K    ++ A+++G  +HG
Sbjct: 634 ---------MVDLLARCGYLDEATDFINRSPFKSAASLWGALLTGCVVHG 674



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 108/485 (22%), Positives = 194/485 (40%), Gaps = 49/485 (10%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR------------NVVAW 251
           +H   ++ G      VA +L D+  + G    AR++     A             + + W
Sbjct: 82  LHSLAVRAGRARDPRVACALADLLARLGRWASARRLLQEATAAEEEGKEEGDEEVDTMLW 141

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N  +    +     +AI  F EM   GV P   +    L A     A  EG+  HA A  
Sbjct: 142 NKRVAMLAEAEEWGDAIAAFAEMRARGVAPDGYACARALHACGRAGAPREGQAVHAHAAK 201

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV----ERDIVTWNLLIASYVQSGQSDV 367
            G    +V    ++  +      E A+V  +R V    +   V WN+++A   + G  D 
Sbjct: 202 AG----HVAAHPLVPGFLAGMYAESADVGAARRVLETEDAPPVAWNVVVACCARLGLVD- 256

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
                  D     ER+  +  V  S  L     WN +L+  A  GR  EA  +   M   
Sbjct: 257 -------DALDLAERMARSGPVEASPSL---ATWNAVLSGCARHGRDREAFGVVRSMLER 306

Query: 428 GISPNIISWNSVI-----LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
           GI P+  S +S++     LG L +G   EA   FL+ +   ++P++ T T  +    +  
Sbjct: 307 GIPPDSSSMSSLLKSVASLGLLAHGM--EAHCFFLRHR---LEPDVYTGTAFVDMYAK-- 359

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
           CG   + + Q++ +T    + TT    ++  ++     +   +   + R+ L        
Sbjct: 360 CGR--LEYAQKVFDTLELRNITTWNSLVAGYSNAGQFDHALDLVEEMKRNRLDPDITTWN 417

Query: 543 SLVDMYAKCGNIHQA----KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            L+  Y+  G   QA    +++  I  +  +  + ++ISG   +G   ++   F  +Q+ 
Sbjct: 418 GLISGYSMNGRSSQAVLLLRQMKAIGLTPNVVSWTSLISGSCHNGDYEDSFYFFNEMQKD 477

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
            + P  +T + +L AC+   L+ +G EL             M     ++++ S+ GNL  
Sbjct: 478 HVQPSVVTMSVLLRACAGLALLAKGKELHCFALRRRAYDRDMVVATALIDMYSKSGNLAS 537

Query: 659 ALRVI 663
           A R+ 
Sbjct: 538 ATRIF 542



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 140/322 (43%), Gaps = 44/322 (13%)

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
           + + W   ++ L +     +AI  F EM   G+ P       AL AC    + R G+A+H
Sbjct: 137 DTMLWNKRVAMLAEAEEWGDAIAAFAEMRARGVAPDGYACARALHACGRAGAPREGQAVH 196

Query: 527 GYLIRHDLCLPTPIVTS-LVDMYAKCGNIHQAKRVFD----------------------- 562
            +  +       P+V   L  MYA+  ++  A+RV +                       
Sbjct: 197 AHAAKAGHVAAHPLVPGFLAGMYAESADVGAARRVLETEDAPPVAWNVVVACCARLGLVD 256

Query: 563 --------------ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
                         +  S  L  +NA++SG A HG   EA  + +++ ++GI PDS + +
Sbjct: 257 DALDLAERMARSGPVEASPSLATWNAVLSGCARHGRDREAFGVVRSMLERGIPPDSSSMS 316

Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
           ++L + +  GL+  G+E     F  H+++P +      V++ ++CG L+ A +V  T+  
Sbjct: 317 SLLKSVASLGLLAHGMEAHC-FFLRHRLEPDVYTGTAFVDMYAKCGRLEYAQKVFDTLEL 375

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLL--QLEPDNPGNYVALSNAYAASGRWNEVS 726
             +     SL++    + + + A  + E +   +L+PD    +  L + Y+ +GR ++  
Sbjct: 376 R-NITTWNSLVAGYSNAGQFDHALDLVEEMKRNRLDPDIT-TWNGLISGYSMNGRSSQAV 433

Query: 727 QVRDIMKEKGLRKNPGCSWIQI 748
            +   MK  GL  N   SW  +
Sbjct: 434 LLLRQMKAIGLTPNV-VSWTSL 454



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 21/225 (9%)

Query: 66  LLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVF 125
              EM+  + Q        LL+ C     +  G+++H   L+    + R+  V T L+  
Sbjct: 470 FFNEMQKDHVQPSVVTMSVLLRACAGLALLAKGKELHCFALRR-RAYDRDMVVATALIDM 528

Query: 126 YAKCDALDVASRLFCRLR-VKNVFSWAAIIGLNCRVGLSEKALIGFVEM------QEDGV 178
           Y+K   L  A+R+F R++  KN+ SW A++      G   +A+  F +M         G+
Sbjct: 529 YSKSGNLASATRIFERIQEEKNLVSWNAMLTGLAAHGQGREAIALFDDMCSASAGAGAGL 588

Query: 179 SPDNFVLPNVLKACGAL-----GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
            PD+     +L AC ++     GW  F      Y    G    V   + ++D+  +CG L
Sbjct: 589 KPDSITFTALLTACRSMELITEGWDYFDAMESRY----GVTPTVENYACMVDLLARCGYL 644

Query: 234 EEARKVFDGMIARNVVA-WNSMIVGYVQNG---LNEEAIRVFYEM 274
           +EA    +    ++  + W +++ G V +G   L E A R  +++
Sbjct: 645 DEATDFINRSPFKSAASLWGALLTGCVVHGNLALAEAAARKLFKL 689


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 210/707 (29%), Positives = 367/707 (51%), Gaps = 35/707 (4%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNG---DFFARNEYVETKLVVFYAKCDALDVASRL 138
           Y  +LQ  +  RD   G+ +H  ILK+G   D FA+N  + T     Y     L+ AS+L
Sbjct: 6   YANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNT-----YVHFGFLEDASKL 60

Query: 139 FCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
           F  + + N  S+  +     R    ++A    + +  +G   + FV   +LK   ++   
Sbjct: 61  FDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLA 120

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
               +VH YV K+G     FV ++LID Y  CG+++ AR+VFDG+  +++V+W  M+  Y
Sbjct: 121 DTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACY 180

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            +N  +E+++ +F +M + G  P   ++++ L +   L+A   GK  H  A+    + D 
Sbjct: 181 AENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDL 240

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
            +G +++  Y+K G + +A+  F  M + D++ W                  S ++  YA
Sbjct: 241 YVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPW------------------SLMISRYA 282

Query: 379 KCERIDNAKQVF-----NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           + ++   A ++F     +S+++ +   + ++L A A L      +++   +   G+  N+
Sbjct: 283 QSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNV 342

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
              N+++  + + G++  +  +F    +   + N + W T+I G  Q   G +A+  F  
Sbjct: 343 FVSNALMDVYAKCGEIENSVKLF----TGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSN 398

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           ML   I+P+  T +  L A   + +L  GR IH   I+      + +  SL+DMYAKCG 
Sbjct: 399 MLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGR 458

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           I  A+  FD    ++   +NA+I GY++HGL +EAL LF  +QQ    P+ +TF  +L+A
Sbjct: 459 IDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSA 518

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           CS+AGL+++G   F  M  D+ ++P +EH+ C+V LL R G  DEA+++I  +P  P   
Sbjct: 519 CSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVM 578

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           +  +LL  CV     +L +  ++ +L++EP +   +V LSN YA + RW+ V+ VR  MK
Sbjct: 579 VWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMK 638

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           +K ++K PG SW++    +H F   D SHP  + I+A L  L    R
Sbjct: 639 KKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTR 685


>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
 gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
          Length = 969

 Score =  352 bits (903), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 223/759 (29%), Positives = 380/759 (50%), Gaps = 93/759 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I + S++ +   ++ L  EM           +  +L GC     +  G+QIHA +
Sbjct: 180 SWTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALV 239

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +++      +  V    +  Y KC  LD A + F R++ ++V SW  +IG   + G    
Sbjct: 240 VESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSL 299

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           +L  F EM  +G +P++    ++L  C A   +  GR +H  V++   +  V VA+SL+ 
Sbjct: 300 SLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLG 359

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN-EEAIRVFYEMTLEGVEPTRV 284
           MY +C   E++R +FD M  R+ V+W+++I+   +   +  +A+ ++  M  EGV P  +
Sbjct: 360 MYSRCRSWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTL 419

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +++ +L A  +L  L  GK  HA  + +G+E D ++G S++N Y+K G + +A  VF R+
Sbjct: 420 ALSMVLEACGSLAELKGGKLVHAHVIESGLEGD-LVGISLVNMYAKCGTVGEARKVFDRI 478

Query: 345 VERDIVTWNLLIASY--------------------------------------------- 359
             R  + WN +I +Y                                             
Sbjct: 479 NNRSRILWNSMITAYQEKDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRT 538

Query: 360 -----VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                V SG  +DV VA+++ +MYAKC  +  A+ VF+S++ RDVV WN ++AAY   GR
Sbjct: 539 IHTRIVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQ-GR 597

Query: 414 SGE-ASRLFYQMQLEGISPN----------------------IISW-------------N 437
            GE A  L + MQLEG+ P+                      I SW              
Sbjct: 598 DGEGAISLCWAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQIHSWIAESRLENDIVMVT 657

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQ--PNLITWTTLISGLTQNSCGNEAILFFQEML 495
            +I  +   G +N A+++F  + S   Q   +L  WT++I+   Q+    +A+  +++M 
Sbjct: 658 GLITMYANCGSLNNAREIFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMH 717

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
              ++    T    L+AC  ++ LR G+AIH  ++R  L     +  S+V MY KCG+  
Sbjct: 718 SRQVEADRVTFISVLNACAHLSDLRQGQAIHARVMRRGLATDVAVANSIVFMYGKCGSFD 777

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           +A  VF+ +  K++ ++ A+I+ YA HG   +AL +F+ L+Q GI+  ++TF  +L+ACS
Sbjct: 778 EASIVFEKTKHKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNLTFVAMLSACS 837

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           H GL+ EG E F  M ++  ++P+MEH  C+V+LL+R G+L  A   +  MP   +  ++
Sbjct: 838 HVGLIEEGCEFFASM-AELGIEPNMEHHSCLVDLLARAGHLHTAEEFLSRMPVAANTIVL 896

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            +LL+ C    + E A  ++E L  L+P++   YV LSN
Sbjct: 897 TALLAACRVHGDVERARRVAEKLEALDPESEAPYVTLSN 935



 Score =  278 bits (712), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 213/794 (26%), Positives = 370/794 (46%), Gaps = 110/794 (13%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I + S++ +   ++ L  EM           +  +L GC     +  G+QIHA +
Sbjct: 78  SWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALV 137

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDAL-DVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           +++      +  V   L+  Y++C +  D   + F R++ ++V SW  +IG   + G   
Sbjct: 138 VESS--LESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMIGAYSQDGKFS 195

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC--VFVASS 222
            ++  F EM  +G +P++    ++L  C A   +  GR +H  V++   +    + V + 
Sbjct: 196 LSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHLDIGVLNL 255

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
            I+MY KCG L+ A + F  M  R+VV+W  MI  Y Q+G    ++++F EM LEG  P 
Sbjct: 256 TINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPN 315

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
            V+  SILS       L++G+Q HA+ V + +E   V+ +S++  YS+    ED+  +F 
Sbjct: 316 SVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRSLFD 375

Query: 343 RMVERDIVTWNLLI---------------------------------------------- 356
           RM  RD V+W+ +I                                              
Sbjct: 376 RMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEACGSLAELK 435

Query: 357 ------ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
                 A  ++SG    +V  S+V+MYAKC  +  A++VF+ I  R  +LWN+++ AY +
Sbjct: 436 GGKLVHAHVIESGLEGDLVGISLVNMYAKCGTVGEARKVFDRINNRSRILWNSMITAYQE 495

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK------------ 453
                EA  LF +MQ EG+SP+ I++ +V+        L NG+    +            
Sbjct: 496 -KDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRIVDSGFAADVRV 554

Query: 454 -----DMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
                +M+ +  SLG         V  ++++W  +I+   Q   G  AI     M   G+
Sbjct: 555 ATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGM 614

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           +P   T T  L+AC+D   L +GR IH ++    L     +VT L+ MYA CG+++ A+ 
Sbjct: 615 RPDKATFTSLLNACSDPNRLVDGRQIHSWIAESRLENDIVMVTGLITMYANCGSLNNARE 674

Query: 560 VFD--ISPSKE----LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +FD   S S++    L ++ +MI+ Y  HG   +AL L++ +  + ++ D +TF ++LNA
Sbjct: 675 IFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNA 734

Query: 614 CSHAGLVNEGLELFV-----GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
           C+H   + +G  +       G+ +D  V  S      +V +  +CG+ DEA  ++     
Sbjct: 735 CAHLSDLRQGQAIHARVMRRGLATDVAVANS------IVFMYGKCGSFDEA-SIVFEKTK 787

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQ--LEPDNPGNYVALSNAYAASGRWNEVS 726
             D  +  +L+++  +    E A +I   L Q  +E  N   +VA+ +A +  G   E  
Sbjct: 788 HKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNL-TFVAMLSACSHVGLIEEGC 846

Query: 727 QVRDIMKEKGLRKN 740
           +    M E G+  N
Sbjct: 847 EFFASMAELGIEPN 860



 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 194/726 (26%), Positives = 338/726 (46%), Gaps = 98/726 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL  C     +  G+ I  R+   G     +  V    +  Y KC  LD A + F R++ 
Sbjct: 16  LLTACTKLGALEEGKLIQDRL--AGTQLELDIGVRNLTINMYVKCGCLDGAVQTFARMKR 73

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++V SW  +IG   + G    +L  F EM  +G +P++    ++L  C A   +  GR +
Sbjct: 74  RDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQI 133

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR-KVFDGMIARNVVAWNSMIVGYVQNGL 263
           H  V++   +  V VA+SL+ MY +C   E++R + F  M  R+VV+W  MI  Y Q+G 
Sbjct: 134 HALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMIGAYSQDGK 193

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME--LDNVLG 321
              +I++F EM LEG  P  V+  SILS       L++G+Q HA+ V + +E  LD  + 
Sbjct: 194 FSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHLDIGVL 253

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------ 363
           +  IN Y K G L+ A   F+RM  RD+V+W ++I +Y Q G                  
Sbjct: 254 NLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTA 313

Query: 364 ----------------------------------QSDVVVASSIVDMYAKCERIDNAKQV 389
                                             +S VVVA+S++ MY++C   ++++ +
Sbjct: 314 PNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRSL 373

Query: 390 FNSIILRDVVLWNTLLAAYA-DLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGF 443
           F+ + +RD V W+T++ A + +     +A  L+  M  EG+ P  ++ + V+     L  
Sbjct: 374 FDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEACGSLAE 433

Query: 444 LRNGQMNEAK----------------DMFLQMQSLGVQPNL---------ITWTTLISGL 478
           L+ G++  A                 +M+ +  ++G    +         I W ++I+  
Sbjct: 434 LKGGKLVHAHVIESGLEGDLVGISLVNMYAKCGTVGEARKVFDRINNRSRILWNSMITAY 493

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
            Q    +EA+  F+EM   G+ P   T    L+AC + A L NGR IH  ++        
Sbjct: 494 -QEKDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRIVDSGFAADV 552

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            + T+L +MYAKCG++ +A+ VFD    +++  +N MI+ Y        A++L   +Q +
Sbjct: 553 RVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLE 612

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           G+ PD  TFT++LNACS    + +G ++     ++ +++  +     ++ + + CG+L+ 
Sbjct: 613 GMRPDKATFTSLLNACSDPNRLVDGRQIH-SWIAESRLENDIVMVTGLITMYANCGSLNN 671

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE-------HLLQLEPDNPGNYVA 711
           A  +   +  +   H     L T + +   +  EY          H  Q+E D    +++
Sbjct: 672 AREIFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVEADRV-TFIS 730

Query: 712 LSNAYA 717
           + NA A
Sbjct: 731 VLNACA 736



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 182/662 (27%), Positives = 312/662 (47%), Gaps = 104/662 (15%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M   G+ PD  ++  +L AC  LG +  G+ +   +     +  + V +  I+MY KCG 
Sbjct: 1   MDRRGIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGC 60

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L+ A + F  M  R+VV+W  MI  Y Q+G    ++++F EM LEG  P  V+  SILS 
Sbjct: 61  LDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSG 120

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV-VFSRMVERDIVT 351
                 L++G+Q HA+ V + +E   V+ +S++  YS+    ED+ +  F+RM  RD+V+
Sbjct: 121 CEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVS 180

Query: 352 WNLLIASYVQSGQ------------------------------------------SDVVV 369
           W ++I +Y Q G+                                            +VV
Sbjct: 181 WTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVV 240

Query: 370 ASSI------------VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
            SS+            ++MY KC  +D A Q F  +  RDVV W  ++ AY+  G+   +
Sbjct: 241 ESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLS 300

Query: 418 SRLFYQMQLEGISPNIISWNSVILG-----FLRNGQM-----------------NEAKDM 455
            +LF +M LEG +PN +++ S++ G      L  G+                  N    M
Sbjct: 301 LQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGM 360

Query: 456 FLQMQSLGVQPNL---------ITWTTLISGLT-QNSCGNEAILFFQEMLETGIKPSTTT 505
           + + +S     +L         ++W+T+I   + ++S   +A+  ++ ML  G+ P T  
Sbjct: 361 YSRCRSWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLA 420

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           ++  L AC  +A L+ G+ +H ++I   L     +  SLV+MYAKCG + +A++VFD   
Sbjct: 421 LSMVLEACGSLAELKGGKLVHAHVIESGL-EGDLVGISLVNMYAKCGTVGEARKVFDRIN 479

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
           ++   ++N+MI+ Y       EAL LF+ +Q +G+ PD ITF  +LNAC +A  +  G  
Sbjct: 480 NRSRILWNSMITAYQEKD-PHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRT 538

Query: 626 LFV-----GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
           +       G  +D +V  ++       N+ ++CG+L EA  V  +M    D     ++++
Sbjct: 539 IHTRIVDSGFAADVRVATAL------FNMYAKCGSLGEARGVFDSMVF-RDVVSWNNMIA 591

Query: 681 TCVKSNETELAEYISEHLLQLEPDNP--GNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
             V+  + E A  +    +QLE   P    + +L NA +   R  +  Q+   + E  L 
Sbjct: 592 AYVQGRDGEGAISLC-WAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQIHSWIAESRLE 650

Query: 739 KN 740
            +
Sbjct: 651 ND 652


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  352 bits (903), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 207/619 (33%), Positives = 324/619 (52%), Gaps = 62/619 (10%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VF  +SL+ M+ K G L +AR VF  M  R+ V+W  M+VG  + G   EAI+   +MT 
Sbjct: 98  VFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTA 157

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           +G  PT+ ++T++LS+ A   A   G++ H+  V  G+     + +S++N Y K G  E 
Sbjct: 158 DGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAET 217

Query: 337 AEVVFSRMV-------------------------------ERDIVTWNLLIASYVQSG-- 363
           A  VF RM                                 R IV+WN +IA Y Q+G  
Sbjct: 218 ASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLD 277

Query: 364 ----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT---- 403
                             D    +S++   A    +   KQV ++ ILR  + +N+    
Sbjct: 278 AKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQV-HAYILRTEMAYNSQVTN 336

Query: 404 -LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
            L++ YA  G    A R+  Q     +  N+IS+ +++ G+++ G M  A++MF  M + 
Sbjct: 337 ALISTYAKSGSVENARRIMDQSMETDL--NVISFTALLEGYVKIGDMESAREMFGVMNN- 393

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
               +++ WT +I G  QN   +EAI  F+ M+  G +P++ T+   LS C  +A L  G
Sbjct: 394 ---RDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG 450

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAM 581
           + IH   IR  L   + +  +++ MYA+ G+   A+R+FD +   KE   + +MI   A 
Sbjct: 451 KQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQ 510

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HG   EA+ LF+ + + G++PD IT+  +L+ACSHAG VNEG   +  + ++HQ+ P M 
Sbjct: 511 HGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMS 570

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+ C+V+LL+R G   EA   I  MP +PDA   GSLLS C      ELAE  +E LL +
Sbjct: 571 HYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSI 630

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           +P+N G Y A++N Y+A GRW++ +++    KEK +RK  G SW  I  ++HVF A D  
Sbjct: 631 DPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVV 690

Query: 762 HPKTEEIYATLALLGMHVR 780
           HP+ + +YA  A +   ++
Sbjct: 691 HPQRDAVYAMAARMWEEIK 709



 Score =  229 bits (584), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 181/687 (26%), Positives = 294/687 (42%), Gaps = 164/687 (23%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNG-------------------------------- 109
           Y  LLQ C    +   G+ IHAR +K G                                
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 110 ---DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA-IIGLNCRVGLSEK 165
                  RN +    L+  +AK   L  A  +F  +  ++  SW   ++GLN R G   +
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLN-RAGRFGE 147

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+   ++M  DG +P  F L NVL +C        GR VH +V+K+G   CV VA+S+++
Sbjct: 148 AIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLN 207

Query: 226 MYGKCGDLEEARKV-------------------------------FDGMIARNVVAWNSM 254
           MYGKCGD E A  V                               F+ M  R++V+WN+M
Sbjct: 208 MYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAM 267

Query: 255 IVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           I GY QNGL+ +A+++F  M  E  + P   ++TS+LSA ANL  +  GKQ HA  +   
Sbjct: 268 IAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE 327

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373
           M  ++ + +++I+ Y+K G +E+A  +  + +E D+                +V+  +++
Sbjct: 328 MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL----------------NVISFTAL 371

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           ++ Y K   +++A+++F  +  RDVV W  ++  Y   GR+ EA  LF  M   G  PN 
Sbjct: 372 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNS 431

Query: 434 ISW-----------------------------------NSVILGFLRNGQMNEAKDMFLQ 458
            +                                    N++I  + R+G    A+ MF Q
Sbjct: 432 YTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQ 491

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
              +  +   ITWT++I  L Q+  G EA+  F+EML  G++P   T    LSAC+    
Sbjct: 492 ---VCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGF 548

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           +  G+                        Y +  N HQ      I+P  E+  Y  M+  
Sbjct: 549 VNEGK----------------------RYYDQIKNEHQ------IAP--EMSHYACMVDL 578

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC---SHAGLVNEGLELFVGMFSDHQ 635
            A  GL  EA    + +    ++PD+I + ++L+AC    +A L     E  + +  ++ 
Sbjct: 579 LARAGLFSEAQEFIRRMP---VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNS 635

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRV 662
                  +  + N+ S CG   +A R+
Sbjct: 636 GA-----YSAIANVYSACGRWSDAARI 657



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 144/552 (26%), Positives = 245/552 (44%), Gaps = 95/552 (17%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +  L++  +  EA+  L +M    F         +L  C   +    G+++H+ +
Sbjct: 131 SWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFV 190

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV----- 160
           +K G        V   ++  Y KC   + AS +F R+ V++V SW A++ LN  +     
Sbjct: 191 VKLG--LGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDL 248

Query: 161 --------------------------GLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACG 193
                                     GL  KAL  F  M  E  ++PD F + +VL AC 
Sbjct: 249 AESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACA 308

Query: 194 ALGWVGFGRAVHGYVLKVGF---------------------------------DGCVFVA 220
            LG V  G+ VH Y+L+                                    D  V   
Sbjct: 309 NLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISF 368

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L++ Y K GD+E AR++F  M  R+VVAW +MIVGY QNG N+EAI +F  M   G E
Sbjct: 369 TALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE 428

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P   ++ ++LS  A+L  LD GKQ H  A+ + +E  + + ++II  Y++ G    A  +
Sbjct: 429 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRM 488

Query: 341 FSRMVER-DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
           F ++  R + +TW  +I +  Q GQ +              E +   +++  + +  D +
Sbjct: 489 FDQVCWRKETITWTSMIVALAQHGQGE--------------EAVGLFEEMLRAGVEPDRI 534

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
            +  +L+A +  G   E  R + Q++ E  I+P +  +  ++    R G  +EA++   +
Sbjct: 535 TYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRR 594

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL----SAC- 513
           M    V+P+ I W +L+S    +     A L  +++L   I P+ +    A+    SAC 
Sbjct: 595 MP---VEPDAIAWGSLLSACRVHKNAELAELAAEKLLS--IDPNNSGAYSAIANVYSACG 649

Query: 514 --TDVASLRNGR 523
             +D A +   R
Sbjct: 650 RWSDAARIWKAR 661



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 171/353 (48%), Gaps = 26/353 (7%)

Query: 394 ILRDVVLWNTLLAAYADL-GRSG---EASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           +L    L N LL+ Y +  G +G   +A RLF ++ L     N+ +WNS++  F ++G++
Sbjct: 57  LLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLA--RRNVFTWNSLLSMFAKSGRL 114

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
            +A+ +F +M     + + ++WT ++ GL +     EAI    +M   G  P+  T+T  
Sbjct: 115 ADARGVFAEMP----ERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNV 170

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           LS+C    +   GR +H ++++  L    P+  S+++MY KCG+   A  VF+  P + +
Sbjct: 171 LSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSV 230

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +NAM+S     G    A +LF+++  + I    +++  ++   +  GL  + L+LF  
Sbjct: 231 SSWNAMVSLNTHLGRMDLAESLFESMPGRSI----VSWNAMIAGYNQNGLDAKALKLFSR 286

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNL------DEALRVILTMPCDPDAHIIGSLLSTCV 683
           M  +  + P  + F  + ++LS C NL       +    IL      ++ +  +L+ST  
Sbjct: 287 MLHESSMAP--DEF-TITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 684 KSNETELAEYISEHLLQLEPD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
           KS   E A  I +    +E D N  ++ AL   Y   G      ++  +M  +
Sbjct: 344 KSGSVENARRIMDQ--SMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR 394



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 195/424 (45%), Gaps = 63/424 (14%)

Query: 28  THLTKLRESDNSYESL----YKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG 83
           THL ++  +++ +ES+      S+   I+  ++     +A+ L + M      + P+ + 
Sbjct: 241 THLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRM-LHESSMAPDEFT 299

Query: 84  --ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASR---- 137
              +L  C    ++  G+Q+HA IL+     A N  V   L+  YAK  +++ A R    
Sbjct: 300 ITSVLSACANLGNVRIGKQVHAYILRTE--MAYNSQVTNALISTYAKSGSVENARRIMDQ 357

Query: 138 -----------------------------LFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
                                        +F  +  ++V +W A+I    + G +++A+ 
Sbjct: 358 SMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAID 417

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F  M   G  P+++ L  VL  C +L  + +G+ +H   ++   +    V++++I MY 
Sbjct: 418 LFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYA 477

Query: 229 KCGDLEEARKVFDGMIARN-VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
           + G    AR++FD +  R   + W SMIV   Q+G  EEA+ +F EM   GVEP R++  
Sbjct: 478 RSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYV 537

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLG--SSIINFYSKVGLLEDAEVVFSRM- 344
            +LSA ++   ++EGK+ +   + N  ++   +   + +++  ++ GL  +A+    RM 
Sbjct: 538 GVLSACSHAGFVNEGKRYYD-QIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP 596

Query: 345 VERDIVTW-NLLIASYVQSGQSDVVVA---------------SSIVDMYAKCERIDNAKQ 388
           VE D + W +LL A  V        +A               S+I ++Y+ C R  +A +
Sbjct: 597 VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAAR 656

Query: 389 VFNS 392
           ++ +
Sbjct: 657 IWKA 660


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 204/691 (29%), Positives = 348/691 (50%), Gaps = 98/691 (14%)

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDG--CVFVASSLIDMYGKCGDLEEARKVFDG 242
           L ++L+ C    ++   + VHG++LK  F     + + + +   Y KC D++ A ++FD 
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  RN  +W  +I G  +NGL  +    F EM  +G+ P + + + IL     LD+++ G
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
              HA  VI G      + ++++N Y+K+  +ED+  VF+ M E ++V+WN +I  +  +
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250

Query: 363 G----------------------------------------------------QSDVVVA 370
                                                                 S+ +V 
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVG 310

Query: 371 SSIVDMYAKCERIDNAKQVFNS--IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL-- 426
           ++++DM +KC  +  A+ +FNS  I  R    WN +++ Y   G + +A  LF +M    
Sbjct: 311 TALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQND 370

Query: 427 ---------------------------------EGISPNIISW-NSVILGFLRNGQMNEA 452
                                             G+  N +S  N+V   + + G + + 
Sbjct: 371 IYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDV 430

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           + +F +M+      +LI+WT+L++  +Q S  ++AI  F  M   GI P+  T +  L +
Sbjct: 431 RKVFNRME----DRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVS 486

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C ++  L  G+ +HG + +  L +   I ++LVDMYAKCG +  AK+VF+   + +   +
Sbjct: 487 CANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSW 546

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
            A+I+G+A HG+  +AL LF+ + Q G++P+++TF  +L ACSH GLV EGL+ F  M  
Sbjct: 547 TAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKK 606

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
            + + P MEH+ C+V+LLSR G+L++A+  I  MP +P+  +  +LL  C      EL E
Sbjct: 607 TYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGE 666

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
             ++ +L  + +N   YV LSN Y  SG + +   +R +MKE+G++K PGCSWI +   L
Sbjct: 667 LAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTL 726

Query: 753 HVFVACDRSHPKTEEIYATLALLGMHVRLVS 783
           H F A D+ HP+ ++IYA L  L +  +L+S
Sbjct: 727 HKFYAGDQQHPEKDKIYAKLEELKL--KLIS 755



 Score =  215 bits (547), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 149/519 (28%), Positives = 246/519 (47%), Gaps = 61/519 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+ L++     +  +   EM+ +        Y  +LQ C+    +  G  +HA+I+  G 
Sbjct: 143 IAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRG- 201

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +V T L+  YAK   ++ + ++F  +   NV SW A+I       L   A   F
Sbjct: 202 -FTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLF 260

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           + M  +GV+PD      V KA G L  V   + V GY L++G D    V ++LIDM  KC
Sbjct: 261 LRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKC 320

Query: 231 GDLEEARKVFDG--MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           G L+EAR +F+   +  R    WN+MI GY+++G NE+A+ +F +M    +     +  S
Sbjct: 321 GSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCS 380

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNV-LGSSIINFYSKVGLLEDAEVVFSRMVER 347
           + +A A L  L  GK+ HA A+ +G+E++ V + +++ N Y+K G LED   VF+RM +R
Sbjct: 381 VFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDR 440

Query: 348 DIVTWNLLIASYVQS----------------------------------------GQS-- 365
           D+++W  L+ +Y Q                                         GQ   
Sbjct: 441 DLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVH 500

Query: 366 ----------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                     D  + S++VDMYAKC  + +AK+VFN I   D V W  ++A +A  G   
Sbjct: 501 GIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVD 560

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWTTL 474
           +A +LF +M   G+ PN +++  V+      G + E    F L  ++ G+ P +  +  +
Sbjct: 561 DALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACI 620

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           +  L++    N+A+ F   M    ++P+       L AC
Sbjct: 621 VDLLSRVGHLNDAMEFISRM---PVEPNEMVWQTLLGAC 656



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 16/218 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +++ S+  +  +A+++ + M+          +  +L  C     +  GQQ+H  I
Sbjct: 444 SWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGII 503

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K G     ++ +E+ LV  YAKC  L  A ++F R+   +  SW AII  + + G+ + 
Sbjct: 504 CKVG--LDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDD 561

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-------RAVHGYVLKVGFDGCVF 218
           AL  F  M + GV P+      VL AC   G V  G       +  +G V ++    C+ 
Sbjct: 562 ALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACI- 620

Query: 219 VASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
                +D+  + G L +A +    M +  N + W +++
Sbjct: 621 -----VDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLL 653


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  352 bits (902), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 198/584 (33%), Positives = 320/584 (54%), Gaps = 80/584 (13%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYG--KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           +H + LK       FV+S L+ +Y   K  DL  AR +FD +  R+++ WN++I  YV+N
Sbjct: 35  LHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVEN 94

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
             + + I +F+E+  E + P   ++  ++   A L  + EGKQ H +A+           
Sbjct: 95  QFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLAL----------- 142

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
                   K+G                                SDV V  S+V+MY+KC 
Sbjct: 143 --------KIGF------------------------------GSDVFVQGSLVNMYSKCG 164

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            ID A++VF+ +I +DVVLWN+L                        I  N++SWN++I 
Sbjct: 165 EIDCARKVFDGMIDKDVVLWNSL------------------------IDGNLVSWNAMIN 200

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
           G++++G  + A ++F QM       +L+TW  +I+G   N    +A+  F  ML+ G +P
Sbjct: 201 GYMKSGDFDSALELFYQMPIW----DLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRP 256

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
           S  T+   LSA + +A L  GR IH Y+ ++   L   + TSL++MYAKCG I  A  VF
Sbjct: 257 SHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVF 316

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
                K++  + A+I G  +HG+A  ALALF  + + G+ P++I F  +LNAC+HAGLV+
Sbjct: 317 RAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVD 376

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           +G + F  M ++++++P++EH+GC+V++L R G+L+EA   I  MP  P+  I  SLL  
Sbjct: 377 DGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGG 436

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
                + ++ EY ++ ++++ P+  G Y+ LSN YAASG W +VS VR++M ++G RK+P
Sbjct: 437 SRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDP 496

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           GCS ++    LH F+  D SHP+T+EIYA ++ +   ++ V  V
Sbjct: 497 GCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHV 540



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 209/438 (47%), Gaps = 68/438 (15%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYA--KCDALDVASRLFCRL 142
           L Q C   +++   +Q+HA  LK   F   + +V ++L+  Y+  K + L  A  +F R+
Sbjct: 22  LFQTCSAPQEV---EQLHAFSLKTAIF--NHPFVSSRLLALYSDPKINDLGYARSIFDRI 76

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
           + +++  W  II        S   ++ F E+  + + PDNF LP V+K C  LG V  G+
Sbjct: 77  QRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGK 135

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS--------- 253
            +HG  LK+GF   VFV  SL++MY KCG+++ ARKVFDGMI ++VV WNS         
Sbjct: 136 QIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSW 195

Query: 254 ---------------------------------MIVGYVQNGLNEEAIRVFYEMTLEGVE 280
                                            MI GY  NG   +A+++F+ M   G  
Sbjct: 196 NAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSR 255

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P+  ++ S+LSA + L  L +G+  H+    NG ELD +LG+S+I  Y+K G +E A  V
Sbjct: 256 PSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTV 315

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  + ++ +  W  +I      G ++  +A  +              ++  + +  + ++
Sbjct: 316 FRAIQKKKVGHWTAIIVGLGIHGMANHALALFL--------------EMCKTGLKPNAII 361

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           +  +L A    G   +  + F  M  E  I P +  +  ++    R G + EAK+    +
Sbjct: 362 FIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKN---TI 418

Query: 460 QSLGVQPNLITWTTLISG 477
           +++ + PN + W +L+ G
Sbjct: 419 ENMPISPNKVIWMSLLGG 436



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 6/168 (3%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII-GL 156
           G+ IH+ + KNG  F  +  + T L+  YAKC  ++ A  +F  ++ K V  W AII GL
Sbjct: 277 GRWIHSYMEKNG--FELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGL 334

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL-KVGFDG 215
               G++  AL  F+EM + G+ P+  +   VL AC   G V  GR     ++ +   + 
Sbjct: 335 GIH-GMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEP 393

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG 262
            +     L+D+  + G LEEA+   + M I+ N V W S++ G   +G
Sbjct: 394 TLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHG 441


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  352 bits (902), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 210/694 (30%), Positives = 345/694 (49%), Gaps = 84/694 (12%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G ++HA  L+ G     + +    LV FYA C     A R+F  +  ++V SW +++   
Sbjct: 138 GLELHASALRRGHL--ADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAF 195

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
              G+   A    V M   G   +   L +V+ ACG      FG ++H   +KVG +  V
Sbjct: 196 LVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMV 255

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            +A++L+DMYGK GD+E + +VFDGM+ +N V+WNS I  ++  G   + +R+F +M+  
Sbjct: 256 NLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEH 315

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            V P  ++++S+L A   L + D G++ H  ++   M+L                     
Sbjct: 316 NVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDL--------------------- 354

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
                                       D+ VA+S+VDMYAK   ++ A  +F  +  R+
Sbjct: 355 ----------------------------DIFVANSLVDMYAKFGSLEKASTIFEQMKDRN 386

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK---- 453
           VV WN ++A     G   EA RL   MQ  G  PN I+  +V+    R   +   K    
Sbjct: 387 VVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHA 446

Query: 454 ------------------DMFLQMQSLGVQPNL--------ITWTTLISGLTQNSCGNEA 487
                             DM+ +   L +  N+        +++ TLI G +Q+    E+
Sbjct: 447 WSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSEKDDVSYNTLILGYSQSPWCFES 506

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
           +L F++M   GI     +   ALSACT+++  ++G+ IH  L+R  L     +  SL+D+
Sbjct: 507 LLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDL 566

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           Y K G +  A ++F+    K++  +N MI GY MHG    A  LF+ ++  G+D D +++
Sbjct: 567 YTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSY 626

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
             +L ACSH GLV++G + F  M +   ++P   H+ C+V+LL R G L +   +I  MP
Sbjct: 627 IAVLAACSHGGLVDKGKKYFSQMVA-QNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMP 685

Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
              ++ + G+LL  C      ELA++ +EHL +L+P++ G Y  + N YA +GRWNE ++
Sbjct: 686 FPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANK 745

Query: 728 VRDIMKEKGLRKNPGCSWI--QIGEELHVFVACD 759
           +R +MK + ++KNP  SW+  Q G +L  F+  D
Sbjct: 746 IRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGD 779



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 167/361 (46%), Gaps = 20/361 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I++L +     EA  L+T+M+             +L  C     +  G+QIHA  
Sbjct: 389 SWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWS 448

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++ G  F  + ++   L+  Y+KC  L +A  +F R    +V     I+G +      E 
Sbjct: 449 IRRGLMF--DLFISNALIDMYSKCGQLSLARNIFERSEKDDVSYNTLILGYSQSPWCFES 506

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
            L+ F +M+  G+  D       L AC  L     G+ +H  +++    G  F+++SL+D
Sbjct: 507 LLL-FKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLD 565

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y K G L  A K+F+ +  ++V +WN+MI+GY  +G  + A  +F  M  +G++   VS
Sbjct: 566 LYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVS 625

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED-AEVVFSRM 344
             ++L+A ++   +D+GK+  +  V   +E   +  + +++   + G L   AE++    
Sbjct: 626 YIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMP 685

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASS----------------IVDMYAKCERIDNAKQ 388
              +   W  L+ +    G  ++   ++                +++MYA+  R + A +
Sbjct: 686 FPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANK 745

Query: 389 V 389
           +
Sbjct: 746 I 746


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  352 bits (902), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 204/691 (29%), Positives = 348/691 (50%), Gaps = 98/691 (14%)

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDG--CVFVASSLIDMYGKCGDLEEARKVFDG 242
           L ++L+ C    ++   + VHG++LK  F     + + + +   Y KC D++ A ++FD 
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  RN  +W  +I G  +NGL  +    F EM  +G+ P + + + IL     LD+++ G
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
              HA  VI G      + ++++N Y+K+  +ED+  VF+ M E ++V+WN +I  +  +
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250

Query: 363 G----------------------------------------------------QSDVVVA 370
                                                                 S+ +V 
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVG 310

Query: 371 SSIVDMYAKCERIDNAKQVFNS--IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL-- 426
           ++++DM +KC  +  A+ +FNS  I  R    WN +++ Y   G + +A  LF +M    
Sbjct: 311 TALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQND 370

Query: 427 ---------------------------------EGISPNIISW-NSVILGFLRNGQMNEA 452
                                             G+  N +S  N+V   + + G + + 
Sbjct: 371 IYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDV 430

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           + +F +M+      +LI+WT+L++  +Q S  ++AI  F  M   GI P+  T +  L +
Sbjct: 431 RKVFNRME----DRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVS 486

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C ++  L  G+ +HG + +  L +   I ++LVDMYAKCG +  AK+VF+   + +   +
Sbjct: 487 CANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSW 546

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
            A+I+G+A HG+  +AL LF+ + Q G++P+++TF  +L ACSH GLV EGL+ F  M  
Sbjct: 547 TAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKK 606

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
            + + P MEH+ C+V+LLSR G+L++A+  I  MP +P+  +  +LL  C      EL E
Sbjct: 607 TYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGE 666

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
             ++ +L  + +N   YV LSN Y  SG + +   +R +MKE+G++K PGCSWI +   L
Sbjct: 667 LAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTL 726

Query: 753 HVFVACDRSHPKTEEIYATLALLGMHVRLVS 783
           H F A D+ HP+ ++IYA L  L +  +L+S
Sbjct: 727 HKFYAGDQQHPEKDKIYAKLEELKL--KLIS 755



 Score =  215 bits (547), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 149/519 (28%), Positives = 246/519 (47%), Gaps = 61/519 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+ L++     +  +   EM+ +        Y  +LQ C+    +  G  +HA+I+  G 
Sbjct: 143 IAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRG- 201

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +V T L+  YAK   ++ + ++F  +   NV SW A+I       L   A   F
Sbjct: 202 -FTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLF 260

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           + M  +GV+PD      V KA G L  V   + V GY L++G D    V ++LIDM  KC
Sbjct: 261 LRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKC 320

Query: 231 GDLEEARKVFDG--MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           G L+EAR +F+   +  R    WN+MI GY+++G NE+A+ +F +M    +     +  S
Sbjct: 321 GSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCS 380

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNV-LGSSIINFYSKVGLLEDAEVVFSRMVER 347
           + +A A L  L  GK+ HA A+ +G+E++ V + +++ N Y+K G LED   VF+RM +R
Sbjct: 381 VFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDR 440

Query: 348 DIVTWNLLIASYVQS----------------------------------------GQS-- 365
           D+++W  L+ +Y Q                                         GQ   
Sbjct: 441 DLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVH 500

Query: 366 ----------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                     D  + S++VDMYAKC  + +AK+VFN I   D V W  ++A +A  G   
Sbjct: 501 GIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVD 560

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWTTL 474
           +A +LF +M   G+ PN +++  V+      G + E    F L  ++ G+ P +  +  +
Sbjct: 561 DALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACI 620

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           +  L++    N+A+ F   M    ++P+       L AC
Sbjct: 621 VDLLSRVGHLNDAMEFISRM---PVEPNEMVWQTLLGAC 656



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 16/218 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +++ S+  +  +A+++ + M+          +  +L  C     +  GQQ+H  I
Sbjct: 444 SWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGII 503

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K G     ++ +E+ LV  YAKC  L  A ++F R+   +  SW AII  + + G+ + 
Sbjct: 504 CKVG--LDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDD 561

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-------RAVHGYVLKVGFDGCVF 218
           AL  F  M + GV P+      VL AC   G V  G       +  +G V ++    C+ 
Sbjct: 562 ALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACI- 620

Query: 219 VASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
                +D+  + G L +A +    M +  N + W +++
Sbjct: 621 -----VDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLL 653


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  352 bits (902), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 208/612 (33%), Positives = 319/612 (52%), Gaps = 62/612 (10%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VF  +SL+ +Y K G L +AR VF  M  R+ V+W  M+VG  + G   EAI++F +M  
Sbjct: 96  VFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVT 155

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           +G+ PT+ ++T++LS+ A  +A   G++ H+  V  G+     + +S++N Y K G  E 
Sbjct: 156 DGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAET 215

Query: 337 AEVVFSRMVERD-------------------------------IVTWNLLIASYVQSG-- 363
           A  VF RM ER                                IV+WN +IA Y Q+G  
Sbjct: 216 ARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLN 275

Query: 364 ----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW-----N 402
                             D    +S++   A    +   KQV ++ ILR  + +     N
Sbjct: 276 AKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQV-HAYILRSRMPYIGQVTN 334

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
            L++ YA  G    A  +  Q  +  +  N+IS+ +++ G+++ G M  A++MF  M + 
Sbjct: 335 ALISMYAKSGSVENARGVMQQAVMADL--NVISFTALLEGYVKLGDMKHAREMFDVMSNR 392

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
            V    + WT +I G  QN   +EA+  F+ M+ +G +P++ T+   LS C  +A L  G
Sbjct: 393 DV----VAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYG 448

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAM 581
           + IH   IR      + +  S+V MYA+ G++  A+RVFD +   KE   + +MI   A 
Sbjct: 449 KQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQ 508

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HGL  +A+ LF+ + + G+ PD ITF  +L+AC+H G V+EG   F  +   H + P M 
Sbjct: 509 HGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMS 568

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+ C+V+LL+R G   EA   I  MP +PDA   GSLLS C      +LAE  +E LL +
Sbjct: 569 HYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSI 628

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           +P N G Y ALSN Y+A GRWN+ +++    K+K ++K  G SW  IG  +HVF A D  
Sbjct: 629 DPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVL 688

Query: 762 HPKTEEIYATLA 773
           HP+ + +Y T A
Sbjct: 689 HPQRDTVYRTAA 700



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 174/621 (28%), Positives = 279/621 (44%), Gaps = 131/621 (21%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA-IIGLNCRVGLSEKALIGFVE 172
           RN +    L+  YAK   L  A  +F  +  ++  SW   ++GLN RVG   +A+  F++
Sbjct: 94  RNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLN-RVGRFGEAIKMFLD 152

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M  DG+SP  F L NVL +C A    G GR VH +V+K+G   CV VA+S+++MYGKCGD
Sbjct: 153 MVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGD 212

Query: 233 LEEARKVFDGMIARNV-------------------------------VAWNSMIVGYVQN 261
            E AR VF+ M  R+V                               V+WN++I GY QN
Sbjct: 213 AETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQN 272

Query: 262 GLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           GLN +A+  F  M +   + P   ++TS+LSA ANL  +  GKQ HA  + + M     +
Sbjct: 273 GLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQV 332

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
            +++I+ Y+K G +E+A  V  + V  D+                +V+  +++++ Y K 
Sbjct: 333 TNALISMYAKSGSVENARGVMQQAVMADL----------------NVISFTALLEGYVKL 376

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS----- 435
             + +A+++F+ +  RDVV W  ++  Y   G + EA  LF  M   G  PN  +     
Sbjct: 377 GDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVL 436

Query: 436 ------------------------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
                                          NS++  + R+G +  A+ +F ++     +
Sbjct: 437 SVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVH---WR 493

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
              +TWT++I  L Q+  G +A+  F+EML  G+KP   T    LSACT V  +  G+  
Sbjct: 494 KETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRY 553

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
                                         Q +    I P  E+  Y  M+   A  GL 
Sbjct: 554 ----------------------------FQQLQDKHGIVP--EMSHYACMVDLLARAGLF 583

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNAC---SHAGLVNEGLELFVGMFSDHQVKPSME- 641
            EA      +QQ  ++PD+I + ++L+AC    +A L     E  +       + P    
Sbjct: 584 SEAQEF---IQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLL------SIDPGNSG 634

Query: 642 HFGCVVNLLSRCGNLDEALRV 662
            +  + N+ S CG  ++A ++
Sbjct: 635 AYSALSNVYSACGRWNDAAKI 655



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/465 (22%), Positives = 188/465 (40%), Gaps = 122/465 (26%)

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGL-----LEDAEVVFSRM--VERDIVTWNL 354
           G+  HA AV  G+     L ++++++Y+           +A  +F  +   +R++ TWN 
Sbjct: 42  GRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTWN- 100

Query: 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
                            S++ +YAK  R+ +A+ VF  +  RD V W  ++     +GR 
Sbjct: 101 -----------------SLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRF 143

Query: 415 GEASRLFYQMQLEGISP------NIIS-----------------------------WNSV 439
           GEA ++F  M  +G+SP      N++S                              NSV
Sbjct: 144 GEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSV 203

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQP---------------------------NLITWT 472
           +  + + G    A+ +F +M    V                              +++W 
Sbjct: 204 LNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWN 263

Query: 473 TLISGLTQNSCGNEAILFFQEMLE-TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
            +I+G  QN    +A+ FF  ML  + + P   TIT  LSAC ++  +  G+ +H Y++R
Sbjct: 264 AVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILR 323

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRV------------------------------- 560
             +     +  +L+ MYAK G++  A+ V                               
Sbjct: 324 SRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAR 383

Query: 561 --FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
             FD+  ++++  + AMI GY  +G   EA+ LF+ + + G +P+S T   +L+ C+   
Sbjct: 384 EMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLA 443

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            +  G ++        Q + S      +V + +R G+L  A RV 
Sbjct: 444 CLEYGKQIHCKAIRSLQEQSSSVS-NSIVTMYARSGSLPWARRVF 487


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  351 bits (901), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 213/653 (32%), Positives = 338/653 (51%), Gaps = 77/653 (11%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCG---DLEEARKVFDGMIARNVVAWNSMIVG 257
           G+++H  ++  G++   ++ + ++ +Y + G   DL  ARK+F+ M  RN+ AWN+MI+ 
Sbjct: 90  GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILA 149

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           Y +     EA  +F  M   GV P   +  S L     L + D GKQ H+  +  G + D
Sbjct: 150 YARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGD 209

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------- 363
             +G+++I+ Y+K    E    VF  M ER+ VTWN +I++  Q G              
Sbjct: 210 TFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQE 269

Query: 364 -----QSDVVVASSIVDMYAKCERIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRS 414
                Q D    ++++ + A     +  +Q+   +I     +++++   L+  Y++ GR 
Sbjct: 270 SEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRL 329

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
             A  +F +M       N  SWNS+I G+ +NG+  EA  +F QMQ  G++P+  + +++
Sbjct: 330 NYAKEIFNRMA----ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSM 385

Query: 475 ISG---LTQNSCGNEAILFF--QEMLETGIKPSTTTITCALSACTDVA------SLRNGR 523
           +S    L+ +  G E   F     M E GI         A     D A      +++  R
Sbjct: 386 LSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDR 445

Query: 524 -------AIHGYL-------------------IRHDLCLPTPIV------TSLVDMYAKC 551
                   + GY                    I +D+     IV      T+LVDMY+KC
Sbjct: 446 NTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKC 505

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G I +A+ VFD    K +  +NAMISGY+ HG + EAL L++ + +KG+ P+ +TF  IL
Sbjct: 506 GAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAIL 565

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
           +ACSH GLV EGL +F  M  D+ ++   EH+ C+V+LL R G L++A   +  MP +P+
Sbjct: 566 SACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPE 625

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
               G+LL  C    + ++    ++ L +L+P NPG YV +SN YAA+GRW EV  +R +
Sbjct: 626 VSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQM 685

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSK 784
           MK KG++K+PG SWI+I  E+ +F A  ++HPKTEEIY  L     H+ L SK
Sbjct: 686 MKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLR----HLTLQSK 734



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 204/447 (45%), Gaps = 76/447 (17%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHA 103
           S+   I    +  + +EA+ L  +M+     I P+ +    +L  CV   D   G+++H 
Sbjct: 346 SWNSMIEGYQQNGETQEALRLFKQMQLNG--IKPDCFSLSSMLSSCVSLSDSQKGRELHN 403

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVFSWAAIIGLNCRVG 161
            I++N         ++  LV  YAKC ++D A +++ +   + +N   W +I+      G
Sbjct: 404 FIVRNT--MEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKG 461

Query: 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVAS 221
           L +++   F+EM E  +  D   +  ++                           + + +
Sbjct: 462 LKKESFNHFLEMLESDIEYDVLTMVTIV-------------------------NLLVLET 496

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           +L+DMY KCG + +AR VFD M  +N+V+WN+MI GY ++G ++EA+ ++ EM  +G+ P
Sbjct: 497 ALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYP 556

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELD-NVLGSS-----IINFYSKVGLLE 335
             V+  +ILSA ++   ++EG     + +   M+ D N+   +     +++   + G LE
Sbjct: 557 NEVTFLAILSACSHTGLVEEG-----LRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLE 611

Query: 336 DAEVVFSRM-VERDIVTWNLLIASYVQSGQSDV--VVASSIVDMYAKCERIDNAKQVFNS 392
           DA+    +M +E ++ TW  L+ +       D+  + A  + ++        + +     
Sbjct: 612 DAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFEL--------DPQNPGPY 663

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI-ISW---NSVILGFLRNGQ 448
           +I+ ++         YA  GR  E   +   M+++G+  +  +SW   NS I  F    +
Sbjct: 664 VIMSNI---------YAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSK 714

Query: 449 M--------NEAKDMFLQMQSLGVQPN 467
                    N  + + LQ + LG  P+
Sbjct: 715 THPKTEEIYNNLRHLTLQSKGLGYIPD 741


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  351 bits (901), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 227/796 (28%), Positives = 387/796 (48%), Gaps = 87/796 (10%)

Query: 9   PPNPKFSHTK-PQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLL 67
           P  P+++H    + PLK   +H  +L                 +   S+    REA+ L 
Sbjct: 51  PSRPRYAHQLFDETPLK-DISHYNRL-----------------LFDFSRNNHDREALHLF 92

Query: 68  TEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYA 127
            ++      +        L+ C    D   G+Q+H + LK+G  F  +  V T LV  Y 
Sbjct: 93  KDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSG--FLEDVSVGTSLVDMYM 150

Query: 128 KCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPN 187
           K +  +    +F  + +KNV SW +++    R GL+++ +    +MQ +GV+P+ F    
Sbjct: 151 KTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFAT 210

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           VL A      +  G  VH  ++K GF+   FV ++LI MY K   + +A  VFD M+ R+
Sbjct: 211 VLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRD 270

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
            V WN MI GY   G   E  ++F+ M L GV+ +R    + L   +    L+  KQ H 
Sbjct: 271 SVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHC 330

Query: 308 VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSD 366
             V NG E    + ++++  YSK   +++A  +FS      ++VTW  +I  +VQ+  + 
Sbjct: 331 GVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNN- 389

Query: 367 VVVASSIVDMYAKCER------------IDNAK----------QVFNSIILRDVVLWNTL 404
                  VD++ +  R            +   K          Q+  +   +   +   L
Sbjct: 390 ----KKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATAL 445

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           L AY   G   E++R+FY +     + +I++W++++ G  +     +A ++F+Q+   GV
Sbjct: 446 LDAYVKTGNVVESARVFYSIP----AKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGV 501

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
           +PN  T++++I+                               C+ SA T    + +G+ 
Sbjct: 502 KPNEYTFSSVINA------------------------------CSSSAAT----VEHGKQ 527

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           IH   ++        + ++L+ MY+K GNI  A++VF     +++  +N+MI+GY  HG 
Sbjct: 528 IHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGD 587

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG 644
           A +AL +F+ +Q +G+  D +TF  +L AC+HAGLV EG + F  M  D+ +    EH+ 
Sbjct: 588 AKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYS 647

Query: 645 CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
           C+V+L SR G  D+A+ +I  MP      I  +LL+ C      EL +  +E L+ L+P+
Sbjct: 648 CMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPN 707

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPK 764
           +   YV LSN +A +G W E + VR +M E+ ++K  GCSWI+I   +  F+A D SHP 
Sbjct: 708 DAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPF 767

Query: 765 TEEIYATLALLGMHVR 780
           ++ +YA L  L + ++
Sbjct: 768 SDLVYAKLEELSIKLK 783


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  351 bits (901), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 229/816 (28%), Positives = 382/816 (46%), Gaps = 162/816 (19%)

Query: 74  NFQIGP---EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD 130
           ++Q  P   + +  + Q C  ++ +  G+Q HAR++     F    +V   L+  Y KC 
Sbjct: 34  SYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTE--FKPTVFVTNCLIQMYIKCS 91

Query: 131 ALDVASRLFCRLRVKNVFSWAAII-GLNCR--VGLSEKAL-------IGFVE-----MQE 175
            L  A ++F  +  ++  SW A++ G   R  +G+++K          G VE     M  
Sbjct: 92  DLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGR 151

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK------ 229
            G   D      VLK+C +L   G G  +HG  +K+GFD  V   S+L+DMY K      
Sbjct: 152 MGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQND 211

Query: 230 -----------------------------------------------CGDLEE-ARKVFD 241
                                                          C +L + + ++F+
Sbjct: 212 DLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFN 271

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            +   N+ ++N++IVGY ++    EA+ +F  +   G+    VS++    A A +    E
Sbjct: 272 SLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLE 331

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           G Q H      G+ + ++                                          
Sbjct: 332 GLQVH------GLSMKSLC----------------------------------------- 344

Query: 362 SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
             QS++ VA++I+DMY KC  +  A  VF  ++ RD V WN ++AA+   G   +   LF
Sbjct: 345 --QSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF 402

Query: 422 YQMQLEGISPNIISWNSVILG-----------------------------------FLRN 446
             M   G+ P+  ++ SV+                                     + + 
Sbjct: 403 VWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKC 462

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G M +A+ +  ++     +  +++W  +ISG +      EA   F +MLE G+ P   T 
Sbjct: 463 GMMEKAEKLHDRL----AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTY 518

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
              L  C ++ ++  G+ IH  +I+ +L     I ++LVDMY+KCGN+   + +F+ +P+
Sbjct: 519 ATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPN 578

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           ++   +NAM+ GYA HGL  EAL +F+ +Q + + P+  TF  +L AC H GLV +GL  
Sbjct: 579 RDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHY 638

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  M S++ + P +EH+ CVV+++ R G + +AL +I  MP + DA I  +LLS C    
Sbjct: 639 FHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHG 698

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
             E+AE  +  +LQLEP++   YV LSN YA +G WNEV+++R +M+  GL+K PGCSWI
Sbjct: 699 NVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWI 758

Query: 747 QIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
           +I  E+H F+  D++HP+++EIY  L +L   ++ V
Sbjct: 759 EIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWV 794


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  351 bits (901), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 198/661 (29%), Positives = 336/661 (50%), Gaps = 93/661 (14%)

Query: 208 VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267
           ++K G        + L+ ++ K G L EA +VF  +  +    +++M+ GY +N   ++A
Sbjct: 100 IIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDA 159

Query: 268 IRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327
           +  F  M  +GV P   + T +L    +   L +GK+ H   ++NG   +    + ++N 
Sbjct: 160 VSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNM 219

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------------ 363
           Y+K  L+E+A  +F RM ERD+V WN +I+ Y Q+G                        
Sbjct: 220 YAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITI 279

Query: 364 ----------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
                                       +S V V++++VDMY+KC  +  A+ +F+ +  
Sbjct: 280 VSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTG 339

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQM------------------------------- 424
           + VV WN+++  Y   G  G A  +F +M                               
Sbjct: 340 KTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFV 399

Query: 425 -----QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
                QLE +  ++   NS+I  + +  +++ A ++F  +Q       L++W  +I G  
Sbjct: 400 HKLLDQLE-LGSDVSVMNSLISMYSKCKRVDIAAEIFENLQ----HKTLVSWNAMILGYA 454

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           QN   NEAI +F +M    IKP + T+   + A  +++ L   + IHG +IR  L     
Sbjct: 455 QNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVF 514

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           + T+LVDMYAKCG +H A+++FD+   + +  +NAMI GY  HGL   AL LF+ ++++ 
Sbjct: 515 VATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEV 574

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           I P+ +TF  +L+ACSH+GLV EG + F  M  D+ ++P+M+H+G +V+LL R   L+EA
Sbjct: 575 IKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEA 634

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
              I  MP +P   + G++L  C      EL E  +  +  L+PD+ G +V L+N YA +
Sbjct: 635 WDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATA 694

Query: 720 GRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
             W++V++VR  M++KG++K PG S +++  E+H F +   SHP+ ++IYA L  LG  +
Sbjct: 695 SMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRI 754

Query: 780 R 780
           +
Sbjct: 755 K 755


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  351 bits (901), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 209/605 (34%), Positives = 316/605 (52%), Gaps = 56/605 (9%)

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           PD  +LP   K+C  L      RA+H      G     FVASSL+  Y + G    AR +
Sbjct: 18  PDPHLLPTAFKSCPTLP---LARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 240 FDGMI--ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANL 296
           FDGM    R VV W++++  +   G  E A R+  EM  +G VEP  ++   ++S     
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNR- 133

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
                G+   AV  +  M  + +L          +  + D  +V              L 
Sbjct: 134 ----SGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLV---------SVGQQLH 180

Query: 357 ASYVQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
              V++G ++D  V ++++DMY KC                               G++ 
Sbjct: 181 GYAVKAGCRADACVVTALIDMYGKC-------------------------------GQAA 209

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           E  R+F     E    ++ S N++I G  RN Q+ EA  +F +    GV+ N+++WT+++
Sbjct: 210 EVVRVFD----ESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIV 265

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           +   QN    EA+ FF+EM   G +P++ TI C L A  +VA+L +GR+ H + +R    
Sbjct: 266 ACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFL 325

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
               + ++LVDMYAKCG +  A+ +FD   S+ +  +NAMI GYAM+G AV A+ +F ++
Sbjct: 326 HDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSM 385

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
            +    PD +TFT +L AC+ AGL  EG   F  M +++ V P MEH+ C+V LL R G 
Sbjct: 386 LKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGK 445

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           LDEA  +I  MP +PDA+I GSLL +C      +LAE  +E L  LEP+N GNYV LSN 
Sbjct: 446 LDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNI 505

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           YA+   W+ V++VR++MK+ GL+K  GCSWI+I  ++H+ +A D SHP    I   +  L
Sbjct: 506 YASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQL 565

Query: 776 GMHVR 780
            + +R
Sbjct: 566 NIQMR 570



 Score =  169 bits (428), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 178/368 (48%), Gaps = 56/368 (15%)

Query: 146 NVFSWAAII-GLNCRVGLSEKALIGFVEMQEDGV-SPDNFVLPNVLKACGALGWVGFGRA 203
           NV +W  ++ GLN R G +  A++    M  +G+  PD   +   L A G +G V  G+ 
Sbjct: 120 NVITWNGLVSGLN-RSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQ 178

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-----------GMIAR------ 246
           +HGY +K G      V ++LIDMYGKCG   E  +VFD            +IA       
Sbjct: 179 LHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQ 238

Query: 247 ------------------NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
                             NVV+W S++   VQNG + EA+  F EM  +G EP  V++  
Sbjct: 239 VCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPC 298

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
           +L A AN+ AL  G+ AH  A+  G   D  + S++++ Y+K G ++DA ++F  MV R+
Sbjct: 299 VLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRN 358

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           +V+WN +I  Y   G++  V A  +     KC++              D+V +  LLAA 
Sbjct: 359 VVSWNAMIGGYAMYGEA--VNAVWMFHSMLKCKQKP------------DMVTFTCLLAAC 404

Query: 409 ADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
              G + E    F +M  E G+SP +  +  ++    R G+++EA D+   M     +P+
Sbjct: 405 TQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMP---FEPD 461

Query: 468 LITWTTLI 475
              W +L+
Sbjct: 462 AYIWGSLL 469



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 143/314 (45%), Gaps = 53/314 (16%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKC-------------DALDVAS-------- 136
           GQQ+H   +K G     +  V T L+  Y KC               +DVAS        
Sbjct: 176 GQQLHGYAVKAG--CRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGL 233

Query: 137 ----------RLFCRLRVK----NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
                     RLF     +    NV SW +I+    + G   +A+  F EMQ  G  P++
Sbjct: 234 SRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNS 293

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
             +P VL A   +  +  GR+ H + L+ GF   V+V+S+L+DMY KCG +++AR +FD 
Sbjct: 294 VTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDT 353

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M++RNVV+WN+MI GY   G    A+ +F+ M     +P  V+ T +L+A       +EG
Sbjct: 354 MVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEG 413

Query: 303 KQAHAVAVINGMELDNVLGSS--------IINFYSKVGLLEDAEVVFSRM-VERDIVTWN 353
           +           E+ N  G S        ++    + G L++A  + S M  E D   W 
Sbjct: 414 RHYFK-------EMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWG 466

Query: 354 LLIASYVQSGQSDV 367
            L+ S    G  D+
Sbjct: 467 SLLGSCRVHGNVDL 480



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 122/300 (40%), Gaps = 28/300 (9%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EAV+   EM+ +  +        +L        +  G+  H   L+ G  F  + YV + 
Sbjct: 276 EAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKG--FLHDVYVSSA 333

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           LV  YAKC  +  A  +F  +  +NV SW A+IG     G +  A+  F  M +    PD
Sbjct: 334 LVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPD 393

Query: 182 NFVLPNVLKACGALGWVGFGRAV-------HGYVLKVGFDGCVFVASSLIDMYGKCGDLE 234
                 +L AC   G    GR         +G   ++    C      ++ + G+ G L+
Sbjct: 394 MVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYAC------MVTLLGRAGKLD 447

Query: 235 EARKVFDGM-IARNVVAWNSMIVGYVQNG---LNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           EA  +   M    +   W S++     +G   L E A    + +  E      V +++I 
Sbjct: 448 EAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENA-GNYVLLSNIY 506

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL---EDAEVVFSRMVER 347
           ++    D ++  ++     ++  + L    G S I   +KV +L   +D+  + + ++E+
Sbjct: 507 ASKKMWDRVNRVRE-----MMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEK 561


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  351 bits (900), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 214/663 (32%), Positives = 338/663 (50%), Gaps = 66/663 (9%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV--FVASSLIDMYGKCGDLEEARK 238
           D+F     L+ C A G    GRAVHG+V++ G  G +  F A+ L++MYGK G L  AR+
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +FD M  RN+V++ +++  + Q G  E A  +F  +  EG E  +  +T++L  +  +DA
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA 177

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
                  H+ A   G + +  +GS +I+ YS   L+ DAE VF+ +V +D V W  +++ 
Sbjct: 178 AGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237

Query: 359 YVQS---------------------------------GQSDVVVASSIVDMYAKCERIDN 385
           Y ++                                   ++  V  +++DMYAKC  I +
Sbjct: 238 YSENDCPENAFRCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKD 297

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A+  F  I   DV+L + +++ YA   ++ +A  LF ++    + PN  S +SV+     
Sbjct: 298 ARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTN 357

Query: 446 NGQMNEAK-------------DMF------------------LQMQSLGVQPNLITWTTL 474
             Q++  K             D+F                  L++ S     N ++W T+
Sbjct: 358 MVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTI 417

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           + G +Q+  G EA+  F EM    +  +  T +  L AC   AS+R+   IH  + +   
Sbjct: 418 VVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTF 477

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
              T I  SL+D YAKCG I  A +VF     +++  +NA+ISGYA+HG A +AL LF  
Sbjct: 478 NNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDR 537

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           + +  ++ + ITF  +L+ C   GLVN GL LF  M  DH +KPSMEH+ C+V LL R G
Sbjct: 538 MNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAG 597

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L++AL+ I  +P  P A +  +LLS+C+      L  + +E +L++EP +   YV LSN
Sbjct: 598 RLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSN 657

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            YAA+G  ++V+ +R  M+  G+RK PG SW++I  E+H F      HP    I A L  
Sbjct: 658 MYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEW 717

Query: 775 LGM 777
           L +
Sbjct: 718 LNL 720



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 143/295 (48%), Gaps = 17/295 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILKN 108
           IS  ++  Q  +A +L   ++     + P  Y    +LQ C     +  G+QIH   +K 
Sbjct: 317 ISRYAQSNQNEQAFELF--LRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKI 374

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G     + +V   L+ FYAKC+ +D + ++F  LR  N  SW  I+    + GL E+AL 
Sbjct: 375 G--HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALS 432

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F EMQ   +        +VL+AC +   +     +H  + K  F+    + +SLID Y 
Sbjct: 433 VFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYA 492

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG + +A KVF  ++ R++++WN++I GY  +G   +A+ +F  M    VE   ++  +
Sbjct: 493 KCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVA 552

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDA 337
           +LS   +      G   H +++ + M +D+ +  S      I+    + G L DA
Sbjct: 553 LLSVCCS-----TGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDA 602



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 12/243 (4%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA+ +  EM+          Y  +L+ C     +    QIH  I K+   F  +  +   
Sbjct: 429 EALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKST--FNNDTVIGNS 486

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  YAKC  +  A ++F  L  +++ SW AII      G +  AL  F  M +  V  +
Sbjct: 487 LIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESN 546

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYV-LKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           +     +L  C + G V  G ++   + +  G    +   + ++ + G+ G L +A + F
Sbjct: 547 DITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQ-F 605

Query: 241 DGMI--ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP----TRVSVTSILSASA 294
            G I  A + + W +++   + +  N    R   E  LE +EP    T V ++++ +A+ 
Sbjct: 606 IGDIPSAPSAMVWRALLSSCIIHK-NVALGRFSAEKILE-IEPQDETTYVLLSNMYAAAG 663

Query: 295 NLD 297
           +LD
Sbjct: 664 SLD 666


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  351 bits (900), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 204/613 (33%), Positives = 327/613 (53%), Gaps = 66/613 (10%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLID---MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
           R +H  ++K G     +  S L++   +         A  VFD +   N++ WN+M  G+
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             +     A++++  M   G+ P   +   +L + A      EG+Q H   +  G +LD 
Sbjct: 65  ALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDI 124

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
            + +S+I+ Y++ G LEDA  VF     RD+V++  LIA YV  G               
Sbjct: 125 YVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGY-------------- 170

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL------------ 426
               I++A+++F+ I  +DVV WN +++ Y + G   EA  LF +M +            
Sbjct: 171 ----IESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMV 226

Query: 427 ------------------------EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
                                    G + N+   N++I  + + G++  A ++F  + + 
Sbjct: 227 TVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWN- 285

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
               ++I+W TLI G T  +   EA+L FQEML +G  P+  T+   L AC  + ++  G
Sbjct: 286 ---KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 342

Query: 523 RAIHGYL---IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-KELPVYNAMISG 578
           R IH Y+   ++  +   + + TSL+DMYAKCG+I  A++VFD S S + L  +NAMISG
Sbjct: 343 RWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISG 402

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           +AMHG A  A  +F  ++  GI+PD ITF  +L+ACSH+G+++ G  +F  M   +++ P
Sbjct: 403 FAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITP 462

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
            +EH+GC+++LL   G   EA  +I TMP +PD  I  SLL  C      EL E  ++ L
Sbjct: 463 KLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKL 522

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN-PGCSWIQIGEELHVFVA 757
           +++EP N G+YV LSN YAA+GRWNEV+++R ++ +KG++K  PGCS I+I   +H F+ 
Sbjct: 523 IKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFII 582

Query: 758 CDRSHPKTEEIYA 770
            D+ HP+  EIY 
Sbjct: 583 GDKLHPQNREIYG 595



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 146/555 (26%), Positives = 257/555 (46%), Gaps = 100/555 (18%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVF---YAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
           + IHA+++K G       Y  +KL+ F       D    A  +F  ++  N+  W  +  
Sbjct: 5   RXIHAQMIKTG--LHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
            +        AL  ++ M   G+ PD++  P +LK+C        G+ +HG+VLK+GFD 
Sbjct: 63  GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFD---------------GMIAR-------------- 246
            ++V +SLI MY + G LE+ARKVFD               G ++R              
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIP 182

Query: 247 --NVVAWNSMIVGYVQNGLNEEAIRVFYE-MTLEGVEPTRVSVTSILSASANLDALDEGK 303
             +VV+WN+MI GYV+ G  +EA+ +F E M +  V P   ++ +++SA A  D+++ G+
Sbjct: 183 GKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR 242

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY---- 359
             H+    +G   +  + +++I+ YSK G +E A  +F  +  +D+++WN LI  Y    
Sbjct: 243 HVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMN 302

Query: 360 ------------VQSGQS--DVVVAS---------------------------------- 371
                       ++SG++  DV + S                                  
Sbjct: 303 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSS 362

Query: 372 ---SIVDMYAKCERIDNAKQVFNSIIL-RDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
              S++DMYAKC  ID A+QVF+S +  R +  WN +++ +A  GR+  A  +F +M++ 
Sbjct: 363 LQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMN 422

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNE 486
           GI P+ I++  ++     +G ++  +++F  M +   + P L  +  +I  L  +    E
Sbjct: 423 GIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKE 482

Query: 487 AILFFQEMLETGIKPSTTTITCA-LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
           A    +EM+ T        I C+ L AC    +L  G +    LI+ +       V  L 
Sbjct: 483 A----EEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVL-LS 537

Query: 546 DMYAKCGNIHQAKRV 560
           ++YA  G  ++  ++
Sbjct: 538 NIYAAAGRWNEVAKI 552



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/433 (28%), Positives = 208/433 (48%), Gaps = 66/433 (15%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALD----------- 133
           LL+ C   +    GQQIH  +LK G  F  + YV T L+  YA+   L+           
Sbjct: 95  LLKSCAKSKIRKEGQQIHGHVLKLG--FDLDIYVHTSLISMYAQNGRLEDARKVFDISSH 152

Query: 134 --------------------VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
                                A +LF  +  K+V SW A+I      G  ++AL  F EM
Sbjct: 153 RDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEM 212

Query: 174 QE-DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
                V PD   +  V+ AC     +  GR VH ++   GF   + + ++LID+Y K G+
Sbjct: 213 MMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGE 272

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           +E A ++FDG+  ++V++WN++I GY    L +EA+ +F EM   G  P  V++ SIL A
Sbjct: 273 VETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 332

Query: 293 SANLDALDEGKQAHAV--AVINGMELDNV--LGSSIINFYSKVGLLEDAEVVF-SRMVER 347
            A+L A+D G+  H      + G+ + NV  L +S+I+ Y+K G ++ A+ VF S M  R
Sbjct: 333 CAHLGAIDIGRWIHVYINKKLKGV-VTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNR 391

Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA- 406
            + TWN +I+ +   G+     A++  D++++           N I   D+     L A 
Sbjct: 392 SLSTWNAMISGFAMHGR-----ANAAFDIFSRMR--------MNGIEPDDITFVGLLSAC 438

Query: 407 ---AYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
                 DLGR+     +F  M +   I+P +  +  +I     +G   EA++M   + ++
Sbjct: 439 SHSGMLDLGRN-----IFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEM---INTM 490

Query: 463 GVQPNLITWTTLI 475
            ++P+ + W +L+
Sbjct: 491 PMEPDGVIWCSLL 503


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  351 bits (900), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 209/700 (29%), Positives = 347/700 (49%), Gaps = 102/700 (14%)

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           + F W +++    R       L     M+  G  P  F  P V  A   LG +  G AVH
Sbjct: 71  DAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVH 130

Query: 206 GYVLKVGF---DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            Y ++ G    DG V VASSL+ MY +CG + +A ++FD M  R+VVAW ++I G V NG
Sbjct: 131 AYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNG 190

Query: 263 LNEEAIRVFYEMTLE----GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
              E +     M       G  P   ++ S L A   L  L  G   H   V  G+    
Sbjct: 191 QCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCP 250

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------ 366
            + SS+ + Y+K    EDA ++F  + E+D+V+W  LI +Y ++G ++            
Sbjct: 251 SVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEES 310

Query: 367 ----------------------------------------VVVASSIVDMYAKCERIDNA 386
                                                   V++ ++++ MYAKC+++D A
Sbjct: 311 GLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIA 370

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE------------------- 427
             VF  +  RD   W++++ AY   G   +   L+ +MQ                     
Sbjct: 371 ATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSC 430

Query: 428 --------GISPNIIS-----------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
                   G S +  S            N++I  + R G  + A+ +F  +++     ++
Sbjct: 431 SRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKT----KDV 486

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           +TW+ LIS  +      +A+L + +ML  G+KP++ T+   +S+C ++A+L +G  IH +
Sbjct: 487 VTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSH 546

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +    L     I T+LVDMY KCG +  A+++FD    +++  +N MISGY MHG A++A
Sbjct: 547 VKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQA 606

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L LF  +++  + P+S+TF  IL+AC HAGLV++G ELF  M  ++ ++P+++H+ C+V+
Sbjct: 607 LKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVD 665

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL + G+L EA  V+  MP +PD  I G+LL  C   +  E+   +++     +P+N G 
Sbjct: 666 LLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGY 725

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           Y+ +SN+Y ++ +WNE+ ++RD+MK  G+ K+ G S I I
Sbjct: 726 YILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI 765



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 225/433 (51%), Gaps = 22/433 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I +  +     +AV+L   M+    Q    +   LL G      +  G+  HA I
Sbjct: 283 SWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAI 342

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++    F  +  +   L+  YAKC  +D+A+ +F  L  ++  SW++++   C+ GL  K
Sbjct: 343 VRRN--FGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLK 400

Query: 166 ALIGFVEMQ---EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
            L  + EMQ   +D    D   L +++ +C  LG +  G++ H Y +K        VA++
Sbjct: 401 CLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANA 460

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI MYG+CG+ + ARK+F  +  ++VV W+++I  Y   G +++A+ ++ +M  EGV+P 
Sbjct: 461 LISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPN 520

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
             ++ S++S+ ANL AL+ G+  H+     G+E D  + +++++ Y K G L  A  +F 
Sbjct: 521 SATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFD 580

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            M+ERD+VTWN++I+ Y   G+     A   + +++  ER  N K   NS+     +L  
Sbjct: 581 SMLERDVVTWNVMISGYGMHGE-----AIQALKLFSMMER-GNVKP--NSLTFL-AILSA 631

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
              A   D GR      LF +M+   + PN+  +  ++    ++G + EA+D+   + ++
Sbjct: 632 CCHAGLVDKGR-----ELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDV---VSAM 683

Query: 463 GVQPNLITWTTLI 475
            ++P+   W TL+
Sbjct: 684 PIEPDGGIWGTLL 696



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 143/262 (54%), Gaps = 3/262 (1%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           GQ  H   +K+      N  V   L+  Y +C   DVA ++F  ++ K+V +W+A+I   
Sbjct: 439 GQSAHCYSIKH--LAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSY 496

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
             +G S+ AL+ + +M  +GV P++  L +V+ +C  L  +  G  +H +V  VG +  +
Sbjct: 497 SHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDL 556

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            + ++L+DMY KCG L  ARK+FD M+ R+VV WN MI GY  +G   +A+++F  M   
Sbjct: 557 SICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERG 616

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            V+P  ++  +ILSA  +   +D+G++         +E +    + +++   K G L++A
Sbjct: 617 NVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEA 676

Query: 338 EVVFSRM-VERDIVTWNLLIAS 358
           E V S M +E D   W  L+ +
Sbjct: 677 EDVVSAMPIEPDGGIWGTLLGA 698



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 18/214 (8%)

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
           P+   W +L+    + S     +   + M  +G +PS  T     SA  ++ +L  G A+
Sbjct: 70  PDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAV 129

Query: 526 HGYLIRHDLCL---PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           H Y +R  L        + +SLV MYA+CG++  A R+FD  P +++  + A+ISG   +
Sbjct: 130 HAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCN 189

Query: 583 GLAVEALA----LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM-FSDHQVK 637
           G   E L+    + ++    G  P+S T  + L AC   G      EL VG       VK
Sbjct: 190 GQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLG------ELSVGTCLHGFGVK 243

Query: 638 PSMEHFGCVVNLL----SRCGNLDEALRVILTMP 667
             + H   VV+ L    ++C + ++A  +   +P
Sbjct: 244 AGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP 277


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  351 bits (900), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 209/700 (29%), Positives = 347/700 (49%), Gaps = 102/700 (14%)

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           + F W +++    R       L     M+  G  P  F  P V  A   LG +  G AVH
Sbjct: 71  DAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVH 130

Query: 206 GYVLKVGF---DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            Y ++ G    DG V VASSL+ MY +CG + +A ++FD M  R+VVAW ++I G V NG
Sbjct: 131 AYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNG 190

Query: 263 LNEEAIRVFYEMTLE----GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
              E +     M       G  P   ++ S L A   L  L  G   H   V  G+    
Sbjct: 191 QCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCP 250

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------ 366
            + SS+ + Y+K    EDA ++F  + E+D+V+W  LI +Y ++G ++            
Sbjct: 251 SVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEES 310

Query: 367 ----------------------------------------VVVASSIVDMYAKCERIDNA 386
                                                   V++ ++++ MYAKC+++D A
Sbjct: 311 GLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIA 370

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE------------------- 427
             VF  +  RD   W++++ AY   G   +   L+ +MQ                     
Sbjct: 371 ATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSC 430

Query: 428 --------GISPNIIS-----------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
                   G S +  S            N++I  + R G  + A+ +F  +++     ++
Sbjct: 431 SRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKT----KDV 486

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           +TW+ LIS  +      +A+L + +ML  G+KP++ T+   +S+C ++A+L +G  IH +
Sbjct: 487 VTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSH 546

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +    L     I T+LVDMY KCG +  A+++FD    +++  +N MISGY MHG A++A
Sbjct: 547 VKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQA 606

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L LF  +++  + P+S+TF  IL+AC HAGLV++G ELF  M  ++ ++P+++H+ C+V+
Sbjct: 607 LKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVD 665

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL + G+L EA  V+  MP +PD  I G+LL  C   +  E+   +++     +P+N G 
Sbjct: 666 LLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGY 725

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           Y+ +SN+Y ++ +WNE+ ++RD+MK  G+ K+ G S I I
Sbjct: 726 YILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI 765



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 225/433 (51%), Gaps = 22/433 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I +  +     +AV+L   M+    Q    +   LL G      +  G+  HA I
Sbjct: 283 SWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAI 342

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++    F  +  +   L+  YAKC  +D+A+ +F  L  ++  SW++++   C+ GL  K
Sbjct: 343 VRRN--FGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLK 400

Query: 166 ALIGFVEMQ---EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
            L  + EMQ   +D    D   L +++ +C  LG +  G++ H Y +K        VA++
Sbjct: 401 CLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANA 460

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI MYG+CG+ + ARK+F  +  ++VV W+++I  Y   G +++A+ ++ +M  EGV+P 
Sbjct: 461 LISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPN 520

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
             ++ S++S+ ANL AL+ G+  H+     G+E D  + +++++ Y K G L  A  +F 
Sbjct: 521 SATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFD 580

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            M+ERD+VTWN++I+ Y   G+     A   + +++  ER  N K   NS+         
Sbjct: 581 SMLERDVVTWNVMISGYGMHGE-----AIQALKLFSMMER-GNVKP--NSLTFL------ 626

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
            +L+A    G   +   LF +M+   + PN+  +  ++    ++G + EA+D+   + ++
Sbjct: 627 AILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDV---VSAM 683

Query: 463 GVQPNLITWTTLI 475
            ++P+   W TL+
Sbjct: 684 PIEPDGGIWGTLL 696



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 113/402 (28%), Positives = 201/402 (50%), Gaps = 34/402 (8%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           GQ  H   +K+      N  V   L+  Y +C   DVA ++F  ++ K+V +W+A+I   
Sbjct: 439 GQSAHCYSIKH--LAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSY 496

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
             +G S+ AL+ + +M  +GV P++  L +V+ +C  L  +  G  +H +V  VG +  +
Sbjct: 497 SHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDL 556

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            + ++L+DMY KCG L  ARK+FD M+ R+VV WN MI GY  +G   +A+++F  M   
Sbjct: 557 SICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERG 616

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            V+P  ++  +ILSA  +   +D+G++         +E +    + +++   K G L++A
Sbjct: 617 NVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEA 676

Query: 338 EVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           E V S M +E D   W  L+             A  + D +    R+  AK+ F S    
Sbjct: 677 EDVVSAMPIEPDGGIWGTLLG------------ACKMHDNFEMGLRV--AKKAFASDPEN 722

Query: 397 D---VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV-ILGFLRNGQMNEA 452
           D   +++ N+    Y    +  E  +L   M+  G+  + I W+++ I GF++N      
Sbjct: 723 DGYYILMSNS----YGSAEKWNEIEKLRDMMKNHGVEKS-IGWSTIDICGFMKNQLTQWQ 777

Query: 453 KDMFLQMQSLGVQPNLIT-----WT-TLISGLTQNSCGNEAI 488
             +F Q +    +   I+     W+ ++++GLT+   GNE +
Sbjct: 778 HSLFEQSEFRSSEDMCISFVSGIWSESMVNGLTE--WGNEVV 817



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 18/214 (8%)

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
           P+   W +L+    + S     +   + M  +G +PS  T     SA  ++ +L  G A+
Sbjct: 70  PDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAV 129

Query: 526 HGYLIRHDLCL---PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           H Y +R  L        + +SLV MYA+CG++  A R+FD  P +++  + A+ISG   +
Sbjct: 130 HAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCN 189

Query: 583 GLAVEALA----LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM-FSDHQVK 637
           G   E L+    + ++    G  P+S T  + L AC   G      EL VG       VK
Sbjct: 190 GQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLG------ELSVGTCLHGFGVK 243

Query: 638 PSMEHFGCVVNLL----SRCGNLDEALRVILTMP 667
             + H   VV+ L    ++C + ++A  +   +P
Sbjct: 244 AGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP 277


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  351 bits (900), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 198/633 (31%), Positives = 337/633 (53%), Gaps = 60/633 (9%)

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
            +P+ F+  N++   G LG +   R V  ++ +      +F  ++L+  Y K G L++ +
Sbjct: 36  TNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPN----LFSWNTLLSAYSKLGYLQDMQ 91

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANL 296
           +VFD M   +VV+WNS++ GY  NGL  E++RV+  M  +G V   R++ +++L  S+N 
Sbjct: 92  RVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNR 151

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
             +D G+Q H      G +    +GS +++ Y+K G + DA  +F  + E++IV +N +I
Sbjct: 152 GFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMI 211

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
              +                  +C  I  A+Q+F+++  +D + W T++      G   E
Sbjct: 212 TGLL------------------RCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKE 253

Query: 417 ASRLFYQMQLEGISPNIISWNSVIL---GFLRNGQMNEAK-------------------- 453
           A   F +M +EG   +  ++ SV+    GFL    ++E K                    
Sbjct: 254 AVDKFKEMGIEGFCMDQFTFGSVLTACGGFL---ALDEGKQIHAYIIRTDYQDNIFVGSA 310

Query: 454 --DMFLQMQSLGV---------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
             DM+ + +++             N+I+WT ++ G  QN    EA+  F +M    I P 
Sbjct: 311 LLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPD 370

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
             T+   +S+C ++ASL  G   HG  +   L     +  +L+ +Y KCG++  A ++F 
Sbjct: 371 DFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFH 430

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               ++   + A++SGYA  G A E ++LF+ +   GI PD +TF  +L+ACS AGLV +
Sbjct: 431 EMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEK 490

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G   F  M  +H++ P  +H+ C+++LLSR G L+EA   I  MP  PDA    +LLS+C
Sbjct: 491 GYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSC 550

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
             +   E+ ++ +E L +LEP NP +Y+ LS+ YAA G+W++V+++R  M+E G++K PG
Sbjct: 551 RLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPG 610

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            SWI+   ++H+F A DRS P +++IYA L  L
Sbjct: 611 HSWIKYKNKVHIFSADDRSSPFSDQIYAKLESL 643



 Score =  189 bits (479), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 140/464 (30%), Positives = 221/464 (47%), Gaps = 60/464 (12%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF------------------ 139
           G+QIH +I K G  +    +V + LV  YAK   ++ A+R+F                  
Sbjct: 157 GRQIHGQIFKFG--YQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGL 214

Query: 140 --CRLRV-----------KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
             CR  V           K+  SW  II    + GL ++A+  F EM  +G   D F   
Sbjct: 215 LRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFG 274

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           +VL ACG    +  G+ +H Y+++  +   +FV S+L+DMY KC +++ A  VF  M  +
Sbjct: 275 SVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHK 334

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           NV++W +M+VGY QNG +EEA+R+F +M    + P   ++ S++S+ ANL +L+EG Q H
Sbjct: 335 NVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFH 394

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
             A+ +G+     + +++I  Y K G LE A  +F  M  RD V+W  L++ Y Q G+++
Sbjct: 395 GQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKAN 454

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                         E I   + +    I+ D V +  +L+A +  G   +    F  M  
Sbjct: 455 --------------ETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVK 500

Query: 427 EG-ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
           E  I+P    +  +I    R G++ EAK+   QM      P+ I W TL+S    N  GN
Sbjct: 501 EHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMP---FSPDAIGWATLLSSCRLN--GN 555

Query: 486 EAILFFQEMLETGIKPST-------TTITCALSACTDVASLRNG 522
             I  +       ++P         ++I  A     DVA LR G
Sbjct: 556 LEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKG 599



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/561 (22%), Positives = 230/561 (40%), Gaps = 127/561 (22%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILK---NGDFFARNEYVETKLVVFYAKCDALDVASRL 138
           Y   L+ C   R+    +++H RI++   N + F  N  + T     Y K   L  A  +
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINT-----YGKLGDLKNARNV 62

Query: 139 FCRLRVKNVFSWAAIIGLNCRVG--------------------------------LSEKA 166
           F  +   N+FSW  ++    ++G                                +SE  
Sbjct: 63  FDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESV 122

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
            +  + +++  V+ +      +L      G+V  GR +HG + K G+   +FV S L+DM
Sbjct: 123 RVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDM 182

Query: 227 YGKCGDLE-------------------------------EARKVFDGMIARNVVAWNSMI 255
           Y K G +                                EA ++FD M  ++ ++W ++I
Sbjct: 183 YAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTII 242

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            G  QNGL +EA+  F EM +EG    + +  S+L+A     ALDEGKQ HA  +    +
Sbjct: 243 TGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQ 302

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD--------- 366
            +  +GS++++ Y K   ++ AE VF +M  +++++W  ++  Y Q+G S+         
Sbjct: 303 DNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDM 362

Query: 367 -------------------------------------------VVVASSIVDMYAKCERI 383
                                                      V V+++++ +Y KC  +
Sbjct: 363 QRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSL 422

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           ++A Q+F+ + +RD V W  L++ YA  G++ E   LF  M   GI P+ +++  V+   
Sbjct: 423 EHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSAC 482

Query: 444 LRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
            R G + +    F  M +   + P    +T +I  L++     EA  F  +M      P 
Sbjct: 483 SRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQM---PFSPD 539

Query: 503 TTTITCALSACTDVASLRNGR 523
                  LS+C    +L  G+
Sbjct: 540 AIGWATLLSSCRLNGNLEIGK 560



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 170/339 (50%), Gaps = 16/339 (4%)

Query: 37  DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMY 96
           DN  E    S+   I+ L++    +EAVD   EM    F +    +G +L  C     + 
Sbjct: 228 DNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALD 287

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
            G+QIHA I++    +  N +V + L+  Y KC  +  A  +F ++R KNV SW A++  
Sbjct: 288 EGKQIHAYIIRTD--YQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVG 345

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
             + G SE+A+  F +MQ + + PD+F L +V+ +C  L  +  G   HG  L  G    
Sbjct: 346 YGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICF 405

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V V+++LI +YGKCG LE A ++F  M  R+ V+W +++ GY Q G   E I +F  M  
Sbjct: 406 VTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLA 465

Query: 277 EGVEPTRVSVTSILSASANLDALDEGK-------QAHAVAVINGMELDNVLGSSIINFYS 329
            G+ P  V+   +LSA +    +++G        + H +  I          + +I+  S
Sbjct: 466 HGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHY------TCMIDLLS 519

Query: 330 KVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDV 367
           + G LE+A+   ++M    D + W  L++S   +G  ++
Sbjct: 520 RAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEI 558



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           +  S+   T AL  C +  +    + +H  +IR      T +  +L++ Y K G++  A+
Sbjct: 1   MSSSSNYYTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNAR 60

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
            VFD  P   L  +N ++S Y+  G   +   +F ++     + D +++ ++L+  +  G
Sbjct: 61  NVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMP----NHDVVSWNSLLSGYAGNG 116

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
           L++E + ++  M  D  V  +   F  ++ L S  G +D
Sbjct: 117 LISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVD 155


>gi|222622633|gb|EEE56765.1| hypothetical protein OsJ_06312 [Oryza sativa Japonica Group]
          Length = 836

 Score =  351 bits (900), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 228/726 (31%), Positives = 370/726 (50%), Gaps = 44/726 (6%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD---ALDVASRLFCR 141
           +L  C   R +  G+ IH  ++K G  F  +      LV  YAKC    A+D A   F  
Sbjct: 69  VLPVCAKLRVLRAGRSIHGYVIKTGLEF--DTLSGNALVSMYAKCGGSIAMDDAHLAFST 126

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW-VGF 200
           +  K+V SW +II      GL E+AL  F +M  +   P+   L NVL  C  + +   +
Sbjct: 127 ICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHY 186

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ +HG+V++ G +  + V+++L+  Y K  ++     +F      ++V WN++I GYV 
Sbjct: 187 GKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVM 246

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL--DN 318
           N     A+++F  +   G+ P  VS+ S+L+A A +  L  G + H   +    EL  + 
Sbjct: 247 NRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGY-IFRHPELLQET 305

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS---------------- 362
            L +++++FYS+    + A   F  +  +D V+WN ++++   S                
Sbjct: 306 SLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWH 365

Query: 363 --GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSG 415
              Q D V   +I+ M   C       Q  +   LR     D  + N +L AYA  G   
Sbjct: 366 DVTQWDSVTILNIIRMSTFCGI--KMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLH 423

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           +A  LF  +       NI++ N++I  +L+N  + +A+  F  M     + +L TW  + 
Sbjct: 424 DAETLFRSLA----GRNIVTGNTMISCYLKNNCVEDAEMTFNHM----AEKDLTTWNLMS 475

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
               QN   ++A   F ++   G+ P T +IT  LSAC  ++S++  +  HGY++R  L 
Sbjct: 476 RLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASL- 534

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
               +  +L+D Y+KCGNI  A  +F +S  K+L ++ AMI  YAMHG+A +A+ LF  +
Sbjct: 535 EDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMAEKAVELFSKM 594

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
               I PD +  T +L+ACSHAGLV+ G+++F  +   + V+P+ EH  C+V+LL+R G 
Sbjct: 595 LTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTEEHCACMVDLLARSGR 654

Query: 656 LDEALRVILTMPCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
           L +A    L MP    +A+  GSLL  C    E ++ +  ++ L  +E ++ GNYV +SN
Sbjct: 655 LQDAYSFALDMPPHVVNANAWGSLLGACKVHGEVKIGQLAADRLFSMEAEDIGNYVIMSN 714

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            +AA  +W  V  VR +MK K ++K  GCSWI++ +  H+FVA D  H     IY  L  
Sbjct: 715 IFAADDKWESVEHVRKLMKSKDMKKPAGCSWIEVEKTRHLFVASDVQHQDRFSIYDVLGS 774

Query: 775 LGMHVR 780
           L   +R
Sbjct: 775 LYQQIR 780



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 161/622 (25%), Positives = 275/622 (44%), Gaps = 62/622 (9%)

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS---PD 181
            Y +  +L  A  +F  +   +      +I  + R GL       F  M   GV    P 
Sbjct: 3   MYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESMPT 62

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD---LEEARK 238
              +  VL  C  L  +  GR++HGYV+K G +      ++L+ MY KCG    +++A  
Sbjct: 63  AVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHL 122

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD- 297
            F  +  ++VV+WNS+I GY +NGL EEA+ +F +M  E   P   ++ ++L   + ++ 
Sbjct: 123 AFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEY 182

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
               GK+ H   V +G+E+D  + ++++  YSKV  +   E +F      DIVTWN +IA
Sbjct: 183 GRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIA 242

Query: 358 SYVQSGQSDVVV--------------ASSIVDMYAKCERIDNAK---QVFNSI-----IL 395
            YV +      +              + S++ +   C ++ N +   +V   I     +L
Sbjct: 243 GYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELL 302

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
           ++  L N L++ Y+   R   A R F  +Q    + + +SWN+++     +    E    
Sbjct: 303 QETSLMNALVSFYSQCDRFDAAFRSFITIQ----NKDSVSWNAILSACANSEHHIEQFFR 358

Query: 456 FL-QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE----MLETGIKPSTTTITCAL 510
            L +M     Q + +T   +I   T   CG   I   QE     L  G    ++     L
Sbjct: 359 LLGEMWHDVTQWDSVTILNIIRMST--FCG---IKMVQESHGYSLRVGYTGDSSVANAIL 413

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVT--SLVDMYAKCGNIHQAKRVFDISPSKE 568
            A      L +   +   L   +      IVT  +++  Y K   +  A+  F+    K+
Sbjct: 414 DAYAKCGYLHDAETLFRSLAGRN------IVTGNTMISCYLKNNCVEDAEMTFNHMAEKD 467

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           L  +N M   YA + L  +A  LF  LQ +G++PD+I+ TNIL+AC H   V       V
Sbjct: 468 LTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQ-----LV 522

Query: 629 GMFSDHQVKPSMEHF---GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
                + ++ S+E     G +++  S+CGN+  A   +  +    D  I  +++      
Sbjct: 523 KQCHGYMLRASLEDIHLEGALLDAYSKCGNIANAYN-LFQVSLHKDLVIFTAMIGAYAMH 581

Query: 686 NETELA-EYISEHL-LQLEPDN 705
              E A E  S+ L L ++PD+
Sbjct: 582 GMAEKAVELFSKMLTLDIKPDH 603



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 127/512 (24%), Positives = 230/512 (44%), Gaps = 82/512 (16%)

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE--- 280
           +DMYG+ G L +A  VFD M   + V  N +I    + GL  +   +F  M   GV+   
Sbjct: 1   MDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESM 60

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG---LLEDA 337
           PT V+V  +L   A L  L  G+  H   +  G+E D + G+++++ Y+K G    ++DA
Sbjct: 61  PTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDA 120

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA--------------SSIVDMYAKCERI 383
            + FS +  +D+V+WN +IA Y ++G  +  +A              S++ ++   C  +
Sbjct: 121 HLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLV 180

Query: 384 DNAKQVFNSI---ILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
           +  +     I   ++R     D+ + N L+A Y+ +        +F   ++     +I++
Sbjct: 181 EYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKM----GDIVT 236

Query: 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
           WN+VI G++ N   + A  +F                             + +LF     
Sbjct: 237 WNTVIAGYVMNRYPSRALKLF-----------------------------QGLLF----- 262

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPIVTSLVDMYAKCGNI 554
             G+ P + ++   L+AC  V +LR G  +HGY+ RH +L   T ++ +LV  Y++C   
Sbjct: 263 -AGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRF 321

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA-LALFKNLQQKGIDPDSITFTNILNA 613
             A R F    +K+   +NA++S  A     +E    L   +       DS+T  NI+  
Sbjct: 322 DAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWHDVTQWDSVTILNIIRM 381

Query: 614 CSHAG--LVNE--GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669
            +  G  +V E  G  L VG   D  V  +      +++  ++CG L +A  +  ++   
Sbjct: 382 STFCGIKMVQESHGYSLRVGYTGDSSVANA------ILDAYAKCGYLHDAETLFRSLA-- 433

Query: 670 PDAHIIGSLLSTC-VKSNETELAEYISEHLLQ 700
               + G+ + +C +K+N  E AE    H+ +
Sbjct: 434 GRNIVTGNTMISCYLKNNCVEDAEMTFNHMAE 465


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  351 bits (900), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 313/561 (55%), Gaps = 36/561 (6%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           + +I  Y K G + +ARKVFD M  RNVV+W SM+ GYVQ G+ EEA ++F+EM    V 
Sbjct: 87  NGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVV 146

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
              V +  +L  S     +D+ K+   +      E D V+ +++I  Y +VG L++A  +
Sbjct: 147 SWTVMIGGLLKESR----IDDAKKLFDMIP----EKDVVVVTNMIGGYCQVGRLDEAREL 198

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  M  R++ TW  +++ Y ++G                  R+D A+++F  +  R+ V 
Sbjct: 199 FDEMKVRNVFTWTTMVSGYAKNG------------------RVDVARKLFEVMPERNEVS 240

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           W  +L  Y   GR  EA  LF  M ++ I    ++ N +IL F   G+M+ A+ MF  M+
Sbjct: 241 WTAMLMGYTQSGRMKEAFELFEAMPVKWI----VACNEMILQFGLAGEMHRARMMFEGMK 296

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
               + +  TW  +I    +     EA+  F  M   G+  +  ++   LS C  +ASL 
Sbjct: 297 ----ERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLD 352

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
           +GR +H  L+R +      + + L+ MY KCG++ +AK +F+    K++ ++N+MI+GY+
Sbjct: 353 HGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYS 412

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            HGL  EAL +F ++   G+ PD +TF  +L+ACS++G V EG E+F  M   +QV+P +
Sbjct: 413 QHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGI 472

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EH+ C+V+LL R G +DEA+ ++  MP +PDA + G+LL  C    + +LAE   E L +
Sbjct: 473 EHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAK 532

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD- 759
           LEP N G YV LS+ YA  GRW +V  +R  +  + + K PGCSWI++ +++H+F   D 
Sbjct: 533 LEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVI-KFPGCSWIEVEKKVHMFTGGDS 591

Query: 760 RSHPKTEEIYATLALLGMHVR 780
           +SHP+   I   L  L   +R
Sbjct: 592 KSHPEQHMITQMLEKLSGFLR 612



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 143/263 (54%), Gaps = 4/263 (1%)

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
           ++++ +     +  A  +F  ++ ++  +W A+I +  R GL  +AL  F  MQ +GV+ 
Sbjct: 274 EMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVAL 333

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           +   + +VL  C +L  +  GR VH  +++  FD  ++VAS LI MY KCGDL  A+ +F
Sbjct: 334 NFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIF 393

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           +  + ++VV WNSMI GY Q+GL EEA+ VF++M   GV+P  V+   +LSA +    + 
Sbjct: 394 NRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVK 453

Query: 301 EGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
           EG +   A+     +E      + +++   + G +++A  +  +M +E D + W  L+ +
Sbjct: 454 EGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGA 513

Query: 359 YVQSGQSDVVVASSIVDMYAKCE 381
                + D  +A   V+  AK E
Sbjct: 514 CRNHMKLD--LAEVAVEKLAKLE 534



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 196/439 (44%), Gaps = 52/439 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +    +E  + EA  L  EM  RN      + G LL+               +RI
Sbjct: 116 SWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLK--------------ESRI 161

Query: 106 LKNGDFF----ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII---GLNC 158
                 F     ++  V T ++  Y +   LD A  LF  ++V+NVF+W  ++     N 
Sbjct: 162 DDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNG 221

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           RV ++ K      E  E            V      +G+   GR    + L         
Sbjct: 222 RVDVARKLFEVMPERNE------------VSWTAMLMGYTQSGRMKEAFELFEAMPVKWI 269

Query: 219 VA-SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           VA + +I  +G  G++  AR +F+GM  R+   WN+MI  + + GL+ EA+ +F  M  E
Sbjct: 270 VACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQRE 329

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           GV     S+ S+LS  A+L +LD G+Q HA  V +  + D  + S +I  Y K G L  A
Sbjct: 330 GVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRA 389

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
           + +F+R + +D+V WN +I  Y Q G  +              E ++    + +S +  D
Sbjct: 390 KGIFNRFLFKDVVMWNSMITGYSQHGLGE--------------EALNVFHDMCSSGVQPD 435

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMF 456
            V +  +L+A +  G+  E   +F  M+    + P I  +  ++    R G+++EA ++ 
Sbjct: 436 EVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMEL- 494

Query: 457 LQMQSLGVQPNLITWTTLI 475
             ++ + ++P+ I W  L+
Sbjct: 495 --VEKMPMEPDAIVWGALL 511



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 195/456 (42%), Gaps = 74/456 (16%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN      ++  Y K   +  A ++F  +  +NV SW +++    + G+ E+A   F EM
Sbjct: 81  RNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM 140

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
               V     ++  +LK       +   + +   + +      V V +++I  Y + G L
Sbjct: 141 PRRNVVSWTVMIGGLLKESR----IDDAKKLFDMIPEKD----VVVVTNMIGGYCQVGRL 192

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           +EAR++FD M  RNV  W +M+ GY +NG  + A ++F  M     E   VS T++L   
Sbjct: 193 DEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMP----ERNEVSWTAML--- 245

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
             +     G+   A  +   M +  ++  + +I  +   G +  A ++F  M ERD  TW
Sbjct: 246 --MGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTW 303

Query: 353 NLLIASYVQSG------------------------------------------------- 363
           N +I  + + G                                                 
Sbjct: 304 NAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVR 363

Query: 364 ---QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
                D+ VAS ++ MY KC  +  AK +FN  + +DVV+WN+++  Y+  G   EA  +
Sbjct: 364 SEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNV 423

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLT 479
           F+ M   G+ P+ +++  V+     +G++ E  ++F  M+ +  V+P +  +  ++  L 
Sbjct: 424 FHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLG 483

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           +    +EA+   ++M    ++P        L AC +
Sbjct: 484 RAGRVDEAMELVEKM---PMEPDAIVWGALLGACRN 516



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 21/197 (10%)

Query: 542 TSLVDMYAKCGNIHQAKRVFDIS--PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           TS +  Y + G+IH A++VFD +  P + +  +NAM+S Y       +AL LF  + Q+ 
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQR- 81

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
              ++++F  +++     G+V +  ++F     D   + ++  +  +V    + G ++EA
Sbjct: 82  ---NTVSFNGMISGYVKNGMVADARKVF-----DVMPERNVVSWTSMVRGYVQEGMVEEA 133

Query: 660 LRVILTMPCDPDAH---IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
            ++   MP         +IG LL      +  +L + I E  + +  +  G Y  +    
Sbjct: 134 EKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQV---- 189

Query: 717 AASGRWNEVSQVRDIMK 733
              GR +E  ++ D MK
Sbjct: 190 ---GRLDEARELFDEMK 203


>gi|357167647|ref|XP_003581265.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g08490-like [Brachypodium
           distachyon]
          Length = 929

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 216/720 (30%), Positives = 367/720 (50%), Gaps = 50/720 (6%)

Query: 89  CVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA---LDVASRLFCRLRVK 145
           C   R +  G  IH  ++K G     +      L+  YAKC     +D A R F  +  K
Sbjct: 200 CAKLRVLRAGMSIHGYVVKTG--LESDTLCGNALISLYAKCGGSGTMDDAHRAFSSIGCK 257

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF-GRAV 204
           +V SW +II  +   GL ++AL  F +M  D   P+   + N+L  C  +    + G+ V
Sbjct: 258 DVVSWNSIIAGHSENGLFKEALALFGQMTSDKCLPNYSTVANILPVCSFMEHGKYYGKEV 317

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HG+V +VG    + V ++L+  Y K  ++  A  +F  M  R+++ WN++I GY+ NG +
Sbjct: 318 HGFVFRVGLYVDISVCNALMTHYSKVYEMRAAESIFRSMNTRDIITWNTIISGYLMNGYH 377

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING-MELDNVLGSS 323
              + +F+ +   G+ P  VS+ S+L+A A +     G   H     +  +  +  L +S
Sbjct: 378 SRVLDLFHRLLSTGMTPDSVSLISLLTACAQVGDAKGGMGVHGYIFRHPVLHQETSLMNS 437

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS------------------ 365
           +++FYS+    +DA   F+ ++ +D ++WN ++++  + G+                   
Sbjct: 438 LVSFYSQCNRFDDALHAFADILSKDSISWNAILSACAKRGKHIEEFFKLFNEMCHEVTRW 497

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLF 421
           D V   ++V +   C      ++     +    + +  + N +L AYA  G   +A  LF
Sbjct: 498 DSVTILNVVRVSNLCGSTKMVREAHGYSLRVGYIGETSVANAILDAYAKCGYPQDADVLF 557

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
             + +     NI+++N++I  +L+N  + EA+ +F QM     + +  TW  +I    QN
Sbjct: 558 RNLAVR----NIVTYNTMISCYLKNSSVEEAEIIFNQMS----KKDQTTWNLMIQVYAQN 609

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541
              ++A   F+++      P T +IT  L AC  ++ ++  R  HGY++R  L     + 
Sbjct: 610 GMCDQAFSLFRQLQ----CPDTISITNILLACIHLSLVQLVRQCHGYMLRASL-EDIHLE 664

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
            SL+D Y+KCGNI  A  +F +SP+K+L  + AMI GYAMHG+A EA+ LF  +   GI 
Sbjct: 665 GSLLDAYSKCGNITDAYNLFQVSPTKDLVTFTAMIGGYAMHGMAEEAVELFSEMLTLGIG 724

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
           PD +  T +L+ACSHAGLV+ G+++F  +   ++++P+ EH+ C+V+LLSR G L +A  
Sbjct: 725 PDHVVLTALLSACSHAGLVDAGIKIFKSVREIYRIEPTAEHYTCMVDLLSRGGRLQDAYN 784

Query: 662 VILTMPCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
             L MP    +A+  GSL+  C    +  + +  ++ L  +E  + GNYV +SN YAA  
Sbjct: 785 FALDMPPHLVNANAWGSLIGACKVHGDVRIGQLAADQLFSMEFGDIGNYVTVSNIYAAGE 844

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            W+ V  VR +MK K ++K  GCS          F+A D  H     I+ T  +L   ++
Sbjct: 845 EWDGVEHVRKLMKSKDMKKPAGCS-------XGTFIASDVKHQDRSSIHDTSGILYQQIK 897



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 151/584 (25%), Positives = 262/584 (44%), Gaps = 85/584 (14%)

Query: 177 GVSPDNFVLPNVLKACGAL-GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
           G+ PD   L   +K+  AL      GR +HG+V++ G    V VA +++DMYG+CG L +
Sbjct: 80  GLRPDRLALAAAIKSASALRDGESLGRCLHGFVVRTGHAAGVAVAKAVMDMYGRCGTLAD 139

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE---PTRVSVTSILSA 292
           AR VFD M   + V WN +I G  + G  ++   +F  M   G +   PT V+V  ++  
Sbjct: 140 ARLVFDEMSCPDTVCWNILITGSSRAGYFDDVFDLFRSMVACGADESMPTAVTVAVVIPV 199

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV---GLLEDAEVVFSRMVERDI 349
            A L  L  G   H   V  G+E D + G+++I+ Y+K    G ++DA   FS +  +D+
Sbjct: 200 CAKLRVLRAGMSIHGYVVKTGLESDTLCGNALISLYAKCGGSGTMDDAHRAFSSIGCKDV 259

Query: 350 VTWNLLIASYVQSGQSDVVVA--------------SSIVDMYAKCERIDNAKQ------- 388
           V+WN +IA + ++G     +A              S++ ++   C  +++ K        
Sbjct: 260 VSWNSIIAGHSENGLFKEALALFGQMTSDKCLPNYSTVANILPVCSFMEHGKYYGKEVHG 319

Query: 389 -VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
            VF   +  D+ + N L+  Y+ +     A  +F  M     + +II+WN++I G+L NG
Sbjct: 320 FVFRVGLYVDISVCNALMTHYSKVYEMRAAESIFRSMN----TRDIITWNTIISGYLMNG 375

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
             +   D+F ++ S G+ P+ ++  +L                                 
Sbjct: 376 YHSRVLDLFHRLLSTGMTPDSVSLISL--------------------------------- 402

Query: 508 CALSACTDVASLRNGRAIHGYLIRHD-LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
             L+AC  V   + G  +HGY+ RH  L   T ++ SLV  Y++C     A   F    S
Sbjct: 403 --LTACAQVGDAKGGMGVHGYIFRHPVLHQETSLMNSLVSFYSQCNRFDDALHAFADILS 460

Query: 567 KELPVYNAMISGYAMHGLAVEA-LALFKNLQQKGIDPDSITFTNIL---NACSHAGLVNE 622
           K+   +NA++S  A  G  +E    LF  +  +    DS+T  N++   N C    +V E
Sbjct: 461 KDSISWNAILSACAKRGKHIEEFFKLFNEMCHEVTRWDSVTILNVVRVSNLCGSTKMVRE 520

Query: 623 --GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
             G  L VG   +  V  +      +++  ++CG   +A  V+       +     +++S
Sbjct: 521 AHGYSLRVGYIGETSVANA------ILDAYAKCGYPQDA-DVLFRNLAVRNIVTYNTMIS 573

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
             +K++  E AE I     Q+   +   +  +   YA +G  ++
Sbjct: 574 CYLKNSSVEEAEIIFN---QMSKKDQTTWNLMIQVYAQNGMCDQ 614



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 201/482 (41%), Gaps = 69/482 (14%)

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV-TSILSAS 293
           +A  +FD + A +    + ++     NG +  +I +   M   G+ P R+++  +I SAS
Sbjct: 37  DAHSLFDAVPATDHRHCSELLRARTANGDHSGSISLLRGMLGRGLRPDRLALAAAIKSAS 96

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A  D    G+  H   V  G      +  ++++ Y + G L DA +VF  M   D V WN
Sbjct: 97  ALRDGESLGRCLHGFVVRTGHAAGVAVAKAVMDMYGRCGTLADARLVFDEMSCPDTVCWN 156

Query: 354 LLIASYVQSGQSD--------------------VVVASSIVDMYAKCERIDNAKQVFNSI 393
           +LI    ++G  D                     V  + ++ + AK  R+  A    +  
Sbjct: 157 ILITGSSRAGYFDDVFDLFRSMVACGADESMPTAVTVAVVIPVCAKL-RVLRAGMSIHGY 215

Query: 394 ILR-----DVVLWNTLLAAYADLGRSG---EASRLFYQMQLEGISPNIISWNSVILGFLR 445
           +++     D +  N L++ YA  G SG   +A R F  +  +    +++SWNS+I G   
Sbjct: 216 VVKTGLESDTLCGNALISLYAKCGGSGTMDDAHRAFSSIGCK----DVVSWNSIIAGHSE 271

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
           NG   EA  +F QM S    PN  T                 IL     +E G       
Sbjct: 272 NGLFKEALALFGQMTSDKCLPNYSTVAN--------------ILPVCSFMEHG------- 310

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
                           G+ +HG++ R  L +   +  +L+  Y+K   +  A+ +F    
Sbjct: 311 -------------KYYGKEVHGFVFRVGLYVDISVCNALMTHYSKVYEMRAAESIFRSMN 357

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
           ++++  +N +ISGY M+G     L LF  L   G+ PDS++  ++L AC+  G    G+ 
Sbjct: 358 TRDIITWNTIISGYLMNGYHSRVLDLFHRLLSTGMTPDSVSLISLLTACAQVGDAKGGMG 417

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
           +   +F    +         +V+  S+C   D+AL     +    D+    ++LS C K 
Sbjct: 418 VHGYIFRHPVLHQETSLMNSLVSFYSQCNRFDDALHAFADI-LSKDSISWNAILSACAKR 476

Query: 686 NE 687
            +
Sbjct: 477 GK 478


>gi|218190515|gb|EEC72942.1| hypothetical protein OsI_06806 [Oryza sativa Indica Group]
          Length = 1030

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 228/726 (31%), Positives = 370/726 (50%), Gaps = 44/726 (6%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD---ALDVASRLFCR 141
           +L  C   R +  G+ IH  ++K G  F  +      LV  YAKC    A+D A   F  
Sbjct: 204 VLPVCAKLRVLRAGRSIHGYVIKTGLEF--DTLSGNALVSMYAKCGGSIAMDDAHLAFST 261

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW-VGF 200
           +  K+V SW +II      GL E+AL  F +M  +   P+   L NVL  C  + +   +
Sbjct: 262 ICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHY 321

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ +HG+V++ G +  + V+++L+  Y K  ++     +F      ++V WN++I GYV 
Sbjct: 322 GKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVM 381

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL--DN 318
           N     A+++F  +   G+ P  VS+ S+L+A A +  L  G + H   +    EL  + 
Sbjct: 382 NRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGY-IFRHPELLQET 440

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS---------------- 362
            L +++++FYS+    + A   F  +  +D V+WN ++++   S                
Sbjct: 441 SLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWH 500

Query: 363 --GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSG 415
              Q D V   +I+ M   C       Q  +   LR     D  + N +L AYA  G   
Sbjct: 501 DVTQWDSVTILNIIRMSTFCGI--KMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLH 558

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           +A  LF  +       NI++ N++I  +L+N  + +A+  F  M     + +L TW  + 
Sbjct: 559 DAETLFRSLA----GRNIVTGNTMISCYLKNNCVEDAEMTFNHM----AEKDLTTWNLMS 610

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
               QN   ++A   F ++   G+ P T +IT  LSAC  ++S++  +  HGY++R  L 
Sbjct: 611 RLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASL- 669

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
               +  +L+D Y+KCGNI  A  +F +S  K+L ++ AMI  YAMHG+A +A+ LF  +
Sbjct: 670 EDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMAEKAVELFSKM 729

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
               I PD +  T +L+ACSHAGLV+ G+++F  +   + V+P+ EH  C+V+LL+R G 
Sbjct: 730 LTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTEEHCACMVDLLARSGR 789

Query: 656 LDEALRVILTMPCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
           L +A    L MP    +A+  GSLL  C    E ++ +  ++ L  +E ++ GNYV +SN
Sbjct: 790 LQDAYSFALDMPPHVVNANAWGSLLGACKVHGEVKIGQLAADRLFSMEAEDIGNYVIMSN 849

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            +AA  +W  V  VR +MK K ++K  GCSWI++ +  H+FVA D  H     IY  L  
Sbjct: 850 IFAADDKWESVEHVRKLMKSKDMKKPAGCSWIEVEKTRHLFVASDVQHQDRFSIYDVLGS 909

Query: 775 LGMHVR 780
           L   +R
Sbjct: 910 LYQQIR 915



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 149/592 (25%), Positives = 264/592 (44%), Gaps = 94/592 (15%)

Query: 156 LNCRVGLSEKALIG--------FVEMQEDGVSPDNFVLPNVLKACGAL----GWVGFGRA 203
           + C   L E+A+ G           M   G+ P+   L   +K+  AL    G    GR 
Sbjct: 56  MRCSALLRERAVGGDHYGCTSLLRWMLARGLRPNRLALAAAVKSSSALPDCRGGAALGRC 115

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +HG  +KVG+     VA +++DMYG+ G L +A  VFD M   + V  N +I    + GL
Sbjct: 116 LHGLAVKVGYADGAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGL 175

Query: 264 NEEAIRVFYEMTLEGVE---PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
             +   +F  M   GV+   PT V+V  +L   A L  L  G+  H   +  G+E D + 
Sbjct: 176 YNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLS 235

Query: 321 GSSIINFYSKVG---LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA------- 370
           G+++++ Y+K G    ++DA + FS +  +D+V+WN +IA Y ++G  +  +A       
Sbjct: 236 GNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMIS 295

Query: 371 -------SSIVDMYAKCERIDNAKQVFNSI---ILR-----DVVLWNTLLAAYADLGRSG 415
                  S++ ++   C  ++  +     I   ++R     D+ + N L+A Y+ +    
Sbjct: 296 EECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMR 355

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
               +F   ++     +I++WN+VI G++ N   + A  +F                   
Sbjct: 356 AVESIFRSSKM----GDIVTWNTVIAGYVMNRYPSRALKLF------------------- 392

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DL 534
                     + +LF       G+ P + ++   L+AC  V +LR G  +HGY+ RH +L
Sbjct: 393 ----------QGLLF------AGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPEL 436

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA-LALFK 593
              T ++ +LV  Y++C     A R F    +K+   +NA++S  A     +E    L  
Sbjct: 437 LQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLG 496

Query: 594 NLQQKGIDPDSITFTNILNACSHAG--LVNE--GLELFVGMFSDHQVKPSMEHFGCVVNL 649
            +       DS+T  NI+   +  G  +V E  G  L VG   D  V  +      +++ 
Sbjct: 497 EMWHDVTQWDSVTILNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANA------ILDA 550

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC-VKSNETELAEYISEHLLQ 700
            ++CG L +A  +  ++       + G+ + +C +K+N  E AE    H+ +
Sbjct: 551 YAKCGYLHDAETLFRSLA--GRNIVTGNTMISCYLKNNCVEDAEMTFNHMAE 600



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 167/649 (25%), Positives = 287/649 (44%), Gaps = 64/649 (9%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+ +H   +K G  +A    V   ++  Y +  +L  A  +F  +   +      +I  +
Sbjct: 113 GRCLHGLAVKVG--YADGAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITAS 170

Query: 158 CRVGLSEKALIGFVEMQEDGVS---PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD 214
            R GL       F  M   GV    P    +  VL  C  L  +  GR++HGYV+K G +
Sbjct: 171 SRAGLYNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLE 230

Query: 215 GCVFVASSLIDMYGKCGD---LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
                 ++L+ MY KCG    +++A   F  +  ++VV+WNS+I GY +NGL EEA+ +F
Sbjct: 231 FDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALF 290

Query: 272 YEMTLEGVEPTRVSVTSILSASANLD-ALDEGKQAHAVAVINGMELDNVLGSSIINFYSK 330
            +M  E   P   ++ ++L   + ++     GK+ H   V +G+E+D  + ++++  YSK
Sbjct: 291 GQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSK 350

Query: 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV--------------ASSIVDM 376
           V  +   E +F      DIVTWN +IA YV +      +              + S++ +
Sbjct: 351 VCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISL 410

Query: 377 YAKCERIDNAK---QVFNSI-----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
              C ++ N +   +V   I     +L++  L N L++ Y+   R   A R F  +Q   
Sbjct: 411 LTACAQVGNLRVGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQ--- 467

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFL-QMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
            + + +SWN+++     +    E     L +M     Q + +T   +I   T   CG   
Sbjct: 468 -NKDSVSWNAILSACANSEHHIEQFFRLLGEMWHDVTQWDSVTILNIIRMST--FCG--- 521

Query: 488 ILFFQE----MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT- 542
           I   QE     L  G    ++     L A      L +   +   L   +      IVT 
Sbjct: 522 IKMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRN------IVTG 575

Query: 543 -SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
            +++  Y K   +  A+  F+    K+L  +N M   YA + L  +A  LF  LQ +G++
Sbjct: 576 NTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGLN 635

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF---GCVVNLLSRCGNLDE 658
           PD+I+ TNIL+AC H   V       V     + ++ S+E     G +++  S+CGN+  
Sbjct: 636 PDTISITNILSACIHLSSVQ-----LVKQCHGYMLRASLEDIHLEGALLDAYSKCGNIAN 690

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELA-EYISEHL-LQLEPDN 705
           A   +  +    D  I  +++         E A E  S+ L L ++PD+
Sbjct: 691 AYN-LFQVSLHKDLVIFTAMIGAYAMHGMAEKAVELFSKMLTLDIKPDH 738


>gi|302801269|ref|XP_002982391.1| hypothetical protein SELMODRAFT_116290 [Selaginella moellendorffii]
 gi|300149983|gb|EFJ16636.1| hypothetical protein SELMODRAFT_116290 [Selaginella moellendorffii]
          Length = 779

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 209/752 (27%), Positives = 369/752 (49%), Gaps = 103/752 (13%)

Query: 55  SKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFAR 114
           + E    +A++L   M+    +     +   L+ C  +  +  G+++HA I + G     
Sbjct: 35  NSENDAVQALELYKRMQLEGVRPDSVTFVTCLKACTVEGALGDGRKVHAHIRELG--LET 92

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG-LSEKALIGFVEM 173
           + Y    L+  Y KC + + A +LF R+   NV SW ++IG   + G L  ++++ F +M
Sbjct: 93  DIYAANALINMYGKCRSPEDAFQLFSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKM 152

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           + +G+ P+   +  VL+AC     +  GR VHGYVL+ G      + ++L+DMY K G +
Sbjct: 153 ELEGIRPNLITMVAVLRACN----LTDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGGV 208

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           +EA  V   M  R+V++WN MI GY Q+G  +E +R  + M  +G+ PT+V+  ++L+A 
Sbjct: 209 DEADVVLREMPKRDVISWNIMISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNAC 268

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           ++ + L EGK  H   V  G++ D V+ S ++  Y K G LED +     + ER+ + WN
Sbjct: 269 SSEEDLGEGKSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWN 328

Query: 354 LLIASYV---------------------------------------------------QS 362
            +I +Y                                                    Q 
Sbjct: 329 TIIGAYARYSDHFQALRSFQQMQLEGVKADAVTFVLMLGTCSSPAHLAQGILLHDWISQL 388

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G   ++V +S+  MYAKC  +D A+++F  +  R+ V WN+L++A    G   +A + F 
Sbjct: 389 GFESIIVHNSLTAMYAKCGSLDAARKMFEEMPSRNSVSWNSLMSAAIQHGCHADAHKFFQ 448

Query: 423 QMQLEGISPNIISW-----------------------------------NSVILGFLRNG 447
           +M+LEG  P+ ++                                    N++I  + + G
Sbjct: 449 RMKLEGSRPDEVTCISMLDACTKQANAKEGSSIHQMVVESGFDKRTGVANALIFMYAKLG 508

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
               A+++F  M     + N ++W T+++   +     +A+  F +M    +     T  
Sbjct: 509 DHEAARNVFDAM----AERNTVSWNTILAAYVEKGLNRDAVEMFWKM---DVARDKVTYV 561

Query: 508 CALSACTDVAS-LRNGRAIHGYLIRHDLC--LPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
            AL AC+ +A  L +G+ IHGY++ H     L T   T+LV+MY KCG++ +A+++FD  
Sbjct: 562 AALDACSGLAGGLAHGKLIHGYMLDHGFSNRLDTVAATALVNMYGKCGSLQEARKIFDGM 621

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
             +++  + ++I  YA H    +AL L K ++Q+G+  D + F +IL+ C H+GL+ EG 
Sbjct: 622 LHRDVVTWTSLIVAYAQHSEIEQALKLVKIMEQEGVKVDDVVFLSILSGCDHSGLLEEGC 681

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
           + FV M  D+ + P +EH+ C++++L R G+LD A +++  +P   D+ +  +LL+ C  
Sbjct: 682 KYFVSMIDDYGISPRLEHYNCIIDVLGRAGHLDLAEKLVDRLPSRSDSKVWMTLLAACRM 741

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
               E  +  +  +  L+P  P  YV LSN Y
Sbjct: 742 HGNPERGKRAARRITLLDPSIPAAYVVLSNIY 773



 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 187/636 (29%), Positives = 306/636 (48%), Gaps = 109/636 (17%)

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE----KALIGFVEMQEDGVSP 180
            Y KC  LD AS +F +L   +V +W+A++G       SE    +AL  +  MQ +GV P
Sbjct: 1   MYGKCGDLDAASEVFGKLDPLHVAAWSALLGAYAN---SENDAVQALELYKRMQLEGVRP 57

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D+      LKAC   G +G GR VH ++ ++G +  ++ A++LI+MYGKC   E+A ++F
Sbjct: 58  DSVTFVTCLKACTVEGALGDGRKVHAHIRELGLETDIYAANALINMYGKCRSPEDAFQLF 117

Query: 241 DGMIARNVVAWNSMIVGYVQNG-LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
             M + NVV+W S+I  + Q G L  E++ +F +M LEG+ P  +++ ++L A      L
Sbjct: 118 SRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVLRAC----NL 173

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
            +G+Q H   +  GM LD  LG+++++ Y K G +++A+VV   M +RD+++WN++I+ Y
Sbjct: 174 TDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGGVDEADVVLREMPKRDVISWNIMISGY 233

Query: 360 VQSG----------------------------------------------------QSDV 367
            QSG                                                      D 
Sbjct: 234 AQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSEEDLGEGKSIHRSVVDMGLDRDE 293

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           VV S ++ MY KC  +++ K+    +  R+ + WNT++ AYA      +A R F QMQLE
Sbjct: 294 VVKSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQLE 353

Query: 428 GI---------------SP-------------------NIISWNSVILGFLRNGQMNEAK 453
           G+               SP                   +II  NS+   + + G ++ A+
Sbjct: 354 GVKADAVTFVLMLGTCSSPAHLAQGILLHDWISQLGFESIIVHNSLTAMYAKCGSLDAAR 413

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            MF +M S     N ++W +L+S   Q+ C  +A  FFQ M   G +P   T    L AC
Sbjct: 414 KMFEEMPS----RNSVSWNSLMSAAIQHGCHADAHKFFQRMKLEGSRPDEVTCISMLDAC 469

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
           T  A+ + G +IH  ++       T +  +L+ MYAK G+   A+ VFD    +    +N
Sbjct: 470 TKQANAKEGSSIHQMVVESGFDKRTGVANALIFMYAKLGDHEAARNVFDAMAERNTVSWN 529

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH-AGLVNEGLELFVGMFS 632
            +++ Y   GL  +A+ +F  +    +  D +T+   L+ACS  AG +  G +L  G   
Sbjct: 530 TILAAYVEKGLNRDAVEMFWKMD---VARDKVTYVAALDACSGLAGGLAHG-KLIHGYML 585

Query: 633 DHQVKPSMEHFG--CVVNLLSRCGNLDEALRVILTM 666
           DH     ++      +VN+  +CG+L EA ++   M
Sbjct: 586 DHGFSNRLDTVAATALVNMYGKCGSLQEARKIFDGM 621



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 19/227 (8%)

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN--EAILFFQEMLETGIKPSTT 504
           G ++ A ++F ++  L V      W+ L+ G   NS  +  +A+  ++ M   G++P + 
Sbjct: 6   GDLDAASEVFGKLDPLHVA----AWSALL-GAYANSENDAVQALELYKRMQLEGVRPDSV 60

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI--VTSLVDMYAKCGNIHQAKRVFD 562
           T    L ACT   +L +GR +H ++   +L L T I    +L++MY KC +   A ++F 
Sbjct: 61  TFVTCLKACTVEGALGDGRKVHAHI--RELGLETDIYAANALINMYGKCRSPEDAFQLFS 118

Query: 563 ISPSKELPVYNAMISGYAMHG-LAVEALALFKNLQQKGIDPDSITFTNILNACSHA-GLV 620
              S  +  + ++I  +A +G L  E++ LF+ ++ +GI P+ IT   +L AC+   G  
Sbjct: 119 RMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVLRACNLTDGRQ 178

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
             G  L  GM  D  +  ++      V++  + G +DEA  V+  MP
Sbjct: 179 VHGYVLEAGMSLDTSLGNAL------VDMYCKTGGVDEADVVLREMP 219


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 241/748 (32%), Positives = 389/748 (52%), Gaps = 41/748 (5%)

Query: 51   ISSLSKEKQIREAVDLLTEMKCRN--FQIGPEIY--GELLQGCVYKRD--MYTGQQIHAR 104
            IS  S+      A DL + M+     F   P  Y  G L+       D  +   +Q+ AR
Sbjct: 721  ISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLAR 780

Query: 105  ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
            + K+G  F ++ YV + LV  +A+    D A  +F ++ V+NV S   ++    +    E
Sbjct: 781  VEKSG--FLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGE 838

Query: 165  KALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWV----GFGRAVHGYVLKVGF-DGCVF 218
             A   F EM++  G++ D++V+  +L A      +      GR VH +V++ G  D  V 
Sbjct: 839  AAAKVFHEMKDLVGINSDSYVV--LLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVA 896

Query: 219  VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
            + + L++MY K G + +A  VF+ M+ ++ V+WNS+I G  QN  +E+A   F  M   G
Sbjct: 897  IGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTG 956

Query: 279  VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
              P+  ++ S LS+ A+L  +  G+Q H   +  G++ D  + ++++  Y++ G   +  
Sbjct: 957  SMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECL 1016

Query: 339  VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
             VFS M E D V+WN +I +   S  S     S  V  + +  R            L  V
Sbjct: 1017 KVFSLMPEYDQVSWNSVIGALSDSEAS----VSQAVKYFLEMMR--------GGWGLSRV 1064

Query: 399  VLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFL 457
               N +L+A + L    E S   + + L+  +S +    N+++  + + G+MNE + +F 
Sbjct: 1065 TFIN-ILSAVSSLSLH-EVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFA 1122

Query: 458  QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
            +M       + ++W ++ISG   N   ++A+     M++ G +  + T    LSAC  VA
Sbjct: 1123 RMSE---TRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVA 1179

Query: 518  SLRNGRAIHGYLIRHDLCLPTPIV--TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
            +L  G  +H   IR   C+ + +V  ++LVDMY+KCG I  A R F++ P + +  +N+M
Sbjct: 1180 TLERGMEVHACGIR--ACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSM 1237

Query: 576  ISGYAMHGLAVEALALFKNLQQKGIDPDSIT-FTNILNACSHAGLVNEGLELFVGMFSDH 634
            ISGYA HG   +AL LF  +   G  PD +     +L+ACSH G V EG E F  M   +
Sbjct: 1238 ISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVY 1297

Query: 635  QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN--ETELAE 692
            ++ P +EHF C+V+LL R G LDE    I +MP  P+  I  ++L  C ++N   TEL  
Sbjct: 1298 RLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGR 1357

Query: 693  YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
              +E LL+LEP N  NYV L+N YA+  +W +V++ R  MKE  ++K  GCSW+ + + +
Sbjct: 1358 RAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGV 1417

Query: 753  HVFVACDRSHPKTEEIYATLALLGMHVR 780
            HVFVA D+ HP+ + IY  L  L   +R
Sbjct: 1418 HVFVAGDKLHPEKDXIYDKLRELNRKMR 1445



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 144/544 (26%), Positives = 265/544 (48%), Gaps = 50/544 (9%)

Query: 98   GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
             +++H + +K G  F  N ++   L+  Y +   L  A +LF  +  +N+ +WA +I   
Sbjct: 563  ARELHLQSIKYG--FVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 620

Query: 158  CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG--FGRAVHGYVLKVGFDG 215
             + G  ++A   F +M   G  P+++   + L+AC   G  G   G  +HG + K  +  
Sbjct: 621  TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGS 680

Query: 216  CVFVASSLIDMYGKCGD-LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
             V V + LI MYG C D   +AR VFD +  RN ++WNS+I  Y + G    A  +F  M
Sbjct: 681  DVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSM 740

Query: 275  TLEGV----EPTRVSVTSILSASANLDALDEG----KQAHAVAVINGMELDNVLGSSIIN 326
              EG+    +P   +  S+++A+ +  ++D G    +Q  A    +G   D  +GS++++
Sbjct: 741  QKEGLGFSFKPNEYTFGSLITAACS--SVDFGLCVLEQMLARVEKSGFLQDLYVGSALVS 798

Query: 327  FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNA 386
             +++ GL +DA+ +F +M  R++V+ N L+   V+  Q +                   A
Sbjct: 799  GFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEA------------------A 840

Query: 387  KQVFNSIILRDVVLWNT-----LLAAYADLGRSGEASRLFYQMQLE----GISPNIIS-W 436
             +VF+   ++D+V  N+     LL+A+++     E  R   ++       G++ N ++  
Sbjct: 841  AKVFHE--MKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIG 898

Query: 437  NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
            N ++  + ++G + +A  +F     L V+ + ++W +LISGL QN C  +A   F  M  
Sbjct: 899  NGLVNMYAKSGAIADACSVF----ELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRR 954

Query: 497  TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
            TG  PS  T+   LS+C  +  +  G  IH   ++  L     +  +L+ +YA+ G   +
Sbjct: 955  TGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTE 1014

Query: 557  AKRVFDISPSKELPVYNAMISGYAMHGLAV-EALALFKNLQQKGIDPDSITFTNILNACS 615
              +VF + P  +   +N++I   +    +V +A+  F  + + G     +TF NIL+A S
Sbjct: 1015 CLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVS 1074

Query: 616  HAGL 619
               L
Sbjct: 1075 SLSL 1078



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 211/498 (42%), Gaps = 129/498 (25%)

Query: 287  TSILSASANLDAL----------DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
            T++ S+S   ++L          +E ++ H  ++  G   +  L +++IN Y ++G L  
Sbjct: 538  TTLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGS 597

Query: 337  AEVVFSRMVERDIVTWNLLIASYVQSGQ--------SDVVVASSIVDMYA------KCER 382
            A+ +F  M  R++VTW  LI+ Y Q+G+         D+V A  I + YA       C+ 
Sbjct: 598  AQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQE 657

Query: 383  -----------------------------------------IDNAKQVFNSIILRDVVLW 401
                                                      ++A+ VF+ I +R+ + W
Sbjct: 658  SGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISW 717

Query: 402  NTLLAAYADLGRSGEASRLFYQMQLEGI----SPNIISWNSVIL---------------- 441
            N++++ Y+  G    A  LF  MQ EG+     PN  ++ S+I                 
Sbjct: 718  NSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQM 777

Query: 442  ---------------------GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
                                 GF R G  ++AK++F QM   GV+ N+++   L+ GL +
Sbjct: 778  LARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQM---GVR-NVVSMNGLMVGLVK 833

Query: 481  NSCGNEAILFFQEMLE-TGIKPSTTTITCALSACTDVASL----RNGRAIHGYLIRHDLC 535
               G  A   F EM +  GI   +  +   LSA ++ + L    R GR +H ++IR  L 
Sbjct: 834  QKQGEAAAKVFHEMKDLVGINSDSYVVL--LSAFSEFSVLEEGRRKGREVHAHVIRTGLN 891

Query: 536  L-PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
                 I   LV+MYAK G I  A  VF++   K+   +N++ISG   +  + +A   F  
Sbjct: 892  DNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLR 951

Query: 595  LQQKGIDPDSITFTNILNACSHAGLVNEGLE-----LFVGMFSDHQVKPSMEHFGCVVNL 649
            +++ G  P + T  + L++C+  G +  G +     L +G+ +D  V  ++      + L
Sbjct: 952  MRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNAL------LAL 1005

Query: 650  LSRCGNLDEALRVILTMP 667
             +  G   E L+V   MP
Sbjct: 1006 YAETGCFTECLKVFSLMP 1023



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 154/338 (45%), Gaps = 19/338 (5%)

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
           N+ +      + +L+  Y     S EA  L  Q    G   N+   N++I  ++R G + 
Sbjct: 537 NTTLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLG 596

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
            A+ +F +M +     NL+TW  LISG TQN   +EA   F++M+  G  P+      AL
Sbjct: 597 SAQKLFDEMSN----RNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSAL 652

Query: 511 SACTDV--ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC-GNIHQAKRVFDISPSK 567
            AC +   +  + G  IHG + +        +   L+ MY  C  + + A+ VFD    +
Sbjct: 653 RACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIR 712

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGI----DPDSITFTNILN-ACSHAGLVNE 622
               +N++IS Y+  G  V A  LF ++Q++G+     P+  TF +++  ACS    V+ 
Sbjct: 713 NSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSS---VDF 769

Query: 623 GLELFVGMFSDHQVKPSMEHF---GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           GL +   M +  +    ++       +V+  +R G  D+A  +   M       + G L+
Sbjct: 770 GLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNG-LM 828

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
              VK  + E A  +   +  L   N  +YV L +A++
Sbjct: 829 VGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFS 866



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 116/250 (46%), Gaps = 20/250 (8%)

Query: 39   SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
            S+ S+   Y H        + + +A+DL+  M  +  ++    +  +L  C     +  G
Sbjct: 1132 SWNSMISGYIHN-------ELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERG 1184

Query: 99   QQIHA---RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
             ++HA   R     D       V + LV  Y+KC  +D ASR F  + ++NV+SW ++I 
Sbjct: 1185 MEVHACGIRACMESDVV-----VGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMIS 1239

Query: 156  LNCRVGLSEKALIGFVEMQEDGVSPDNFV-LPNVLKACGALGWVGFGRAVHGYVLKV-GF 213
               R G  EKAL  F  M  DG  PD+   L  VL AC  +G+V  G      + +V   
Sbjct: 1240 GYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRL 1299

Query: 214  DGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQ-NGLNEEAIRVF 271
               V   S ++D+ G+ G L+E     + M  + NV+ W +++    + NG N E  R  
Sbjct: 1300 SPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRA 1359

Query: 272  YEMTLEGVEP 281
             EM LE +EP
Sbjct: 1360 AEMLLE-LEP 1368


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/553 (34%), Positives = 318/553 (57%), Gaps = 28/553 (5%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L  A+ +F  +       +NS+I     +    EA+ +++ M   G++P  ++   ++ A
Sbjct: 145 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 204

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
                    G   H   V +G E D+ + SS+I+ Y+    L  A+ +F+    RD+V+W
Sbjct: 205 CNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSW 264

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
           N                  +++D Y K   + +A+ VF+ ++ RDV+ WNT++  YA +G
Sbjct: 265 N------------------AMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVG 306

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
           +  EA RLF +M       N++SWNS++ GF++ G + +A  +F +M    V    ++W 
Sbjct: 307 KIDEAKRLFDEMP----ERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDV----VSWN 358

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           ++++   Q    NEA+  F +M   G+KP+  T+   LSAC  + +L  G  +H Y+  +
Sbjct: 359 SMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDN 418

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
            + + + + T+LVDMYAKCG I  A +VF+   SK++  +N +I+G A+HG   EA  LF
Sbjct: 419 RIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLF 478

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           K +++ G++P+ ITF  IL+ACSHAG+V+EG +L   M S + ++P +EH+GCV++LL+R
Sbjct: 479 KEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLAR 538

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G L+EA+ +I TMP +P+   +G+LL  C      EL E + + L+ L+P + G Y+ L
Sbjct: 539 AGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILL 598

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           SN YAA+ +W++  +VR++MK  G+ K PG S I++   +H FVA D SHP++ +IY  L
Sbjct: 599 SNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKL 658

Query: 773 ALLGMHVRLVSKV 785
               +H RL S +
Sbjct: 659 N--EIHTRLKSAI 669



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 132/538 (24%), Positives = 231/538 (42%), Gaps = 89/538 (16%)

Query: 38  NSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYT 97
           N   SLY S    I +LS  K   EA+ L   M     +     Y  +++ C      + 
Sbjct: 157 NPPPSLYNSL---IRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWF 213

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G  +H  ++K+G  F  + Y+ + L+  YA    L  A +LF     ++V SW A+I   
Sbjct: 214 GLLVHTHVVKSG--FECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMI--- 268

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL-------K 210
                     +  VEM    +  D  V  +V         + +   ++GY +       K
Sbjct: 269 -------DGYVKHVEMGHARMVFDRMVCRDV---------ISWNTMINGYAIVGKIDEAK 312

Query: 211 VGFDGC----VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE 266
             FD      +   +S++  + KCG++E+A  +F  M  R+VV+WNSM+  Y Q G   E
Sbjct: 313 RLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNE 372

Query: 267 AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIIN 326
           A+ +F +M   GV+PT  +V S+LSA A+L ALD+G   H     N +E+++++G+++++
Sbjct: 373 ALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVD 432

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNA 386
            Y+K G +  A  VF+ M  +D++ WN +IA     G                     N 
Sbjct: 433 MYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHG---------------------NV 471

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
           K                            EA +LF +M+  G+ PN I++ +++      
Sbjct: 472 K----------------------------EAQQLFKEMKEAGVEPNDITFVAILSACSHA 503

Query: 447 GQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
           G ++E + +   M  S G++P +  +  +I  L +     EA+     M    ++P+ + 
Sbjct: 504 GMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTM---PMEPNPSA 560

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
           +   L  C    +   G  +   LI    C     +  L ++YA       A++V ++
Sbjct: 561 LGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYIL-LSNIYAAAKKWDDARKVRNL 617


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 216/640 (33%), Positives = 330/640 (51%), Gaps = 69/640 (10%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
            RA HG VLK    G  F+ ++L+  Y + G L EAR+VFDG+  RN  ++N+++  Y +
Sbjct: 36  ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95

Query: 261 NGLNEEA---------------------------------IRVFYEMTLEGVEPTRVSVT 287
            G  +EA                                 +R    M  +       S  
Sbjct: 96  LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFA 155

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S LSA A    L  G+Q H +   +    D  +G+++++ Y+K     DA  VF  M ER
Sbjct: 156 SALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPER 215

Query: 348 DIVTWNLLIASYVQSGQ-----------------SDVVVASSIVDMYAKCERIDNAKQVF 390
           ++V+WN LI  Y Q+G                   D V  SS++   A        +QV 
Sbjct: 216 NVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVH 275

Query: 391 NSIILRD-----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
             ++ RD     +VL N L+  YA  GR+ EA  +F  M     S +++S  S++ G+ +
Sbjct: 276 AHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP----SRSVVSETSILAGYAK 331

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
           +  + +A+ +F QM    V+ N+I W  LI+   QN    EAI  F ++    I P+  T
Sbjct: 332 SANVEDAQVVFSQM----VEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYT 387

Query: 506 ITCALSACTDVASLRNGRAIHGYLI----RHDLCLPTPIV--TSLVDMYAKCGNIHQAKR 559
               L+AC ++A L+ G+  H +++    R D    + +    SLVDMY K G+I    +
Sbjct: 388 YGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAK 447

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VF+   +++   +NAMI GYA +G A +AL LF+ +     +PDS+T   +L+AC H+GL
Sbjct: 448 VFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGL 507

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           V+EG   F  M  DH + PS +H+ C+V+LL R G+L EA  +I  MP +PD+ +  SLL
Sbjct: 508 VDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLL 567

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
             C      EL E  +  L +L+P+N G YV LSN YA  G+W +V +VR  MK++G+ K
Sbjct: 568 GACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSK 627

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
            PGCSWI+IG +++VF+A D  HP   EI++TL ++ M +
Sbjct: 628 QPGCSWIEIGSKMNVFLARDNRHPCRNEIHSTLRIIQMEM 667



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 229/474 (48%), Gaps = 66/474 (13%)

Query: 46  SYFHQISSLSKEKQ--IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHA 103
           SY   +++L++  +    +A+  L  M   +F +    +   L  C  ++D+ TG+Q+H 
Sbjct: 116 SYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHG 175

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
            + ++    A + ++ T LV  YAKC+    A R+F  +  +NV SW ++I    + G  
Sbjct: 176 LVARSP--HADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPV 233

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVFVASS 222
            +AL+ FVEM   G  PD   L +V+ AC  L     GR VH +++K       + + ++
Sbjct: 234 GEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNA 293

Query: 223 LIDMYGKCGDLEEARKVFDGMIAR-------------------------------NVVAW 251
           L+DMY KCG   EAR +FD M +R                               NV+AW
Sbjct: 294 LVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAW 353

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N +I  Y QNG  EEAIR+F ++  + + PT  +  ++L+A  N+  L  G+QAH   + 
Sbjct: 354 NVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLK 413

Query: 312 NGM------ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
            G       E D  +G+S+++ Y K G ++D   VF RM  RD V+WN +I  Y Q+G++
Sbjct: 414 EGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRA 473

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG---EASRLFY 422
                    D     ER+  + +  +S+         T++   +  G SG   E  R F+
Sbjct: 474 K--------DALHLFERMLCSNENPDSV---------TMIGVLSACGHSGLVDEGRRHFH 516

Query: 423 QM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            M +  GI+P+   +  ++    R G + EA+++   M +   +P+ + W +L+
Sbjct: 517 FMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPT---EPDSVLWASLL 567



 Score =  196 bits (499), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 233/506 (46%), Gaps = 59/506 (11%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE--KALIGFV 171
           RN +    L+  YA+    D A  LF  +   +  S+ A++    R G      AL    
Sbjct: 81  RNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLA 140

Query: 172 EMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCG 231
            M  D    + +   + L AC A   +  G  VHG V +      V + ++L+DMY KC 
Sbjct: 141 AMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCE 200

Query: 232 DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
              +AR+VFD M  RNVV+WNS+I  Y QNG   EA+ +F EM   G  P  V+++S++S
Sbjct: 201 RPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMS 260

Query: 292 ASANLDALDEGKQAHAVAVI-NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           A A L A  EG+Q HA  V  + +  D VL +++++ Y+K G   +A  +F  M  R +V
Sbjct: 261 ACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVV 320

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           +   ++A Y +S                    +++A+ VF+ ++ ++V+ WN L+AAYA 
Sbjct: 321 SETSILAGYAKSAN------------------VEDAQVVFSQMVEKNVIAWNVLIAAYAQ 362

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQM---------------- 449
            G   EA RLF Q++ + I P   ++ +V+     +  L+ GQ                 
Sbjct: 363 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGP 422

Query: 450 -------NEAKDMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQE 493
                  N   DM+L+  S+             + ++W  +I G  QN    +A+  F+ 
Sbjct: 423 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFER 482

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-HDLCLPTPIVTSLVDMYAKCG 552
           ML +   P + T+   LSAC     +  GR    ++   H +       T +VD+  + G
Sbjct: 483 MLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAG 542

Query: 553 NIHQAKRVFDISPSKELPVYNAMISG 578
           ++ +A+ +    P++   V  A + G
Sbjct: 543 HLKEAEELIKDMPTEPDSVLWASLLG 568



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 166/346 (47%), Gaps = 38/346 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           I+   +   + EA+ L  EM    F         ++  C        G+Q+HA ++K   
Sbjct: 224 ITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDR 283

Query: 110 ------------DFFA-----------------RNEYVETKLVVFYAKCDALDVASRLFC 140
                       D +A                 R+   ET ++  YAK   ++ A  +F 
Sbjct: 284 LRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFS 343

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
           ++  KNV +W  +I    + G  E+A+  FV+++ D + P ++   NVL ACG +  +  
Sbjct: 344 QMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQL 403

Query: 201 GRAVHGYVLKVGF------DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           G+  H +VLK GF      +  VFV +SL+DMY K G +++  KVF+ M AR+ V+WN+M
Sbjct: 404 GQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAM 463

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVING 313
           IVGY QNG  ++A+ +F  M      P  V++  +LSA  +   +DEG++  H +   +G
Sbjct: 464 IVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHG 523

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
           +       + +++   + G L++AE +   M  E D V W  L+ +
Sbjct: 524 ITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGA 569



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 44/225 (19%)

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           SL   RA HG +++  +   T ++ +LV  YA+ G + +A+RVFD  P +    YNA++S
Sbjct: 32  SLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLS 91

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
            YA  G   EA ALF+ +     DPD  ++  ++ A +  G                   
Sbjct: 92  AYARLGRPDEARALFEAIP----DPDQCSYNAVVAALARHGR------------------ 129

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP---DAHIIGSLLSTCVKSNETELAEYI 694
                           G+  +ALR +  M  D    +A+   S LS C    +    E +
Sbjct: 130 ----------------GHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQV 173

Query: 695 SEHLLQLEP--DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
              L+   P  D+     AL + YA   R  +  +V D M E+ +
Sbjct: 174 -HGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNV 217


>gi|115445617|ref|NP_001046588.1| Os02g0290000 [Oryza sativa Japonica Group]
 gi|47847947|dbj|BAD21737.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536119|dbj|BAF08502.1| Os02g0290000 [Oryza sativa Japonica Group]
          Length = 930

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 228/726 (31%), Positives = 370/726 (50%), Gaps = 44/726 (6%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD---ALDVASRLFCR 141
           +L  C   R +  G+ IH  ++K G  F  +      LV  YAKC    A+D A   F  
Sbjct: 204 VLPVCAKLRVLRAGRSIHGYVIKTGLEF--DTLSGNALVSMYAKCGGSIAMDDAHLAFST 261

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW-VGF 200
           +  K+V SW +II      GL E+AL  F +M  +   P+   L NVL  C  + +   +
Sbjct: 262 ICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHY 321

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ +HG+V++ G +  + V+++L+  Y K  ++     +F      ++V WN++I GYV 
Sbjct: 322 GKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVM 381

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL--DN 318
           N     A+++F  +   G+ P  VS+ S+L+A A +  L  G + H   +    EL  + 
Sbjct: 382 NRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGY-IFRHPELLQET 440

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS---------------- 362
            L +++++FYS+    + A   F  +  +D V+WN ++++   S                
Sbjct: 441 SLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWH 500

Query: 363 --GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSG 415
              Q D V   +I+ M   C       Q  +   LR     D  + N +L AYA  G   
Sbjct: 501 DVTQWDSVTILNIIRMSTFCGI--KMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLH 558

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           +A  LF  +       NI++ N++I  +L+N  + +A+  F  M     + +L TW  + 
Sbjct: 559 DAETLFRSLA----GRNIVTGNTMISCYLKNNCVEDAEMTFNHM----AEKDLTTWNLMS 610

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
               QN   ++A   F ++   G+ P T +IT  LSAC  ++S++  +  HGY++R  L 
Sbjct: 611 RLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASL- 669

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
               +  +L+D Y+KCGNI  A  +F +S  K+L ++ AMI  YAMHG+A +A+ LF  +
Sbjct: 670 EDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMAEKAVELFSKM 729

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
               I PD +  T +L+ACSHAGLV+ G+++F  +   + V+P+ EH  C+V+LL+R G 
Sbjct: 730 LTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTEEHCACMVDLLARSGR 789

Query: 656 LDEALRVILTMPCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
           L +A    L MP    +A+  GSLL  C    E ++ +  ++ L  +E ++ GNYV +SN
Sbjct: 790 LQDAYSFALDMPPHVVNANAWGSLLGACKVHGEVKIGQLAADRLFSMEAEDIGNYVIMSN 849

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            +AA  +W  V  VR +MK K ++K  GCSWI++ +  H+FVA D  H     IY  L  
Sbjct: 850 IFAADDKWESVEHVRKLMKSKDMKKPAGCSWIEVEKTRHLFVASDVQHQDRFSIYDVLGS 909

Query: 775 LGMHVR 780
           L   +R
Sbjct: 910 LYQQIR 915



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 149/592 (25%), Positives = 264/592 (44%), Gaps = 94/592 (15%)

Query: 156 LNCRVGLSEKALIG--------FVEMQEDGVSPDNFVLPNVLKACGAL----GWVGFGRA 203
           + C   L E+A+ G           M   G+ P+   L   +K+  AL    G    GR 
Sbjct: 56  MRCSALLRERAVGGDHYGCTSLLRWMLARGLRPNRLALAAAVKSSSALPDCRGGAALGRC 115

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +HG  +KVG+     VA +++DMYG+ G L +A  VFD M   + V  N +I    + GL
Sbjct: 116 LHGLAVKVGYADGAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGL 175

Query: 264 NEEAIRVFYEMTLEGVE---PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
             +   +F  M   GV+   PT V+V  +L   A L  L  G+  H   +  G+E D + 
Sbjct: 176 YNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLS 235

Query: 321 GSSIINFYSKVG---LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA------- 370
           G+++++ Y+K G    ++DA + FS +  +D+V+WN +IA Y ++G  +  +A       
Sbjct: 236 GNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMIS 295

Query: 371 -------SSIVDMYAKCERIDNAKQVFNSI---ILR-----DVVLWNTLLAAYADLGRSG 415
                  S++ ++   C  ++  +     I   ++R     D+ + N L+A Y+ +    
Sbjct: 296 EECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMR 355

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
               +F   ++     +I++WN+VI G++ N   + A  +F                   
Sbjct: 356 AVESIFRSSKM----GDIVTWNTVIAGYVMNRYPSRALKLF------------------- 392

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DL 534
                     + +LF       G+ P + ++   L+AC  V +LR G  +HGY+ RH +L
Sbjct: 393 ----------QGLLF------AGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPEL 436

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA-LALFK 593
              T ++ +LV  Y++C     A R F    +K+   +NA++S  A     +E    L  
Sbjct: 437 LQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLG 496

Query: 594 NLQQKGIDPDSITFTNILNACSHAG--LVNE--GLELFVGMFSDHQVKPSMEHFGCVVNL 649
            +       DS+T  NI+   +  G  +V E  G  L VG   D  V  +      +++ 
Sbjct: 497 EMWHDVTQWDSVTILNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANA------ILDA 550

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC-VKSNETELAEYISEHLLQ 700
            ++CG L +A  +  ++       + G+ + +C +K+N  E AE    H+ +
Sbjct: 551 YAKCGYLHDAETLFRSLA--GRNIVTGNTMISCYLKNNCVEDAEMTFNHMAE 600



 Score =  175 bits (444), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 166/649 (25%), Positives = 286/649 (44%), Gaps = 64/649 (9%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+ +H   +K G  +A    V   ++  Y +  +L  A  +F  +   +      +I  +
Sbjct: 113 GRCLHGLAVKVG--YADGAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITAS 170

Query: 158 CRVGLSEKALIGFVEMQEDGVS---PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD 214
            R GL       F  M   GV    P    +  VL  C  L  +  GR++HGYV+K G +
Sbjct: 171 SRAGLYNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLE 230

Query: 215 GCVFVASSLIDMYGKCGD---LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
                 ++L+ MY KCG    +++A   F  +  ++VV+WNS+I GY +NGL EEA+ +F
Sbjct: 231 FDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALF 290

Query: 272 YEMTLEGVEPTRVSVTSILSASANLD-ALDEGKQAHAVAVINGMELDNVLGSSIINFYSK 330
            +M  E   P   ++ ++L   + ++     GK+ H   V +G+E+D  + ++++  YSK
Sbjct: 291 GQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSK 350

Query: 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV--------------ASSIVDM 376
           V  +   E +F      DIVTWN +IA YV +      +              + S++ +
Sbjct: 351 VCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISL 410

Query: 377 YAKCERIDNAK---QVFNSI-----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
              C ++ N +   +V   I     +L++  L N L++ Y+   R   A R F  +Q   
Sbjct: 411 LTACAQVGNLRVGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQ--- 467

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFL-QMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
            + + +SWN+++     +    E     L +M     Q + +T   +I       CG   
Sbjct: 468 -NKDSVSWNAILSACANSEHHIEQFFRLLGEMWHDVTQWDSVTILNIIR--MSTFCG--- 521

Query: 488 ILFFQE----MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT- 542
           I   QE     L  G    ++     L A      L +   +   L   +      IVT 
Sbjct: 522 IKMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRN------IVTG 575

Query: 543 -SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
            +++  Y K   +  A+  F+    K+L  +N M   YA + L  +A  LF  LQ +G++
Sbjct: 576 NTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGLN 635

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF---GCVVNLLSRCGNLDE 658
           PD+I+ TNIL+AC H   V       V     + ++ S+E     G +++  S+CGN+  
Sbjct: 636 PDTISITNILSACIHLSSVQ-----LVKQCHGYMLRASLEDIHLEGALLDAYSKCGNIAN 690

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELA-EYISEHL-LQLEPDN 705
           A   +  +    D  I  +++         E A E  S+ L L ++PD+
Sbjct: 691 AYN-LFQVSLHKDLVIFTAMIGAYAMHGMAEKAVELFSKMLTLDIKPDH 738


>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 206/707 (29%), Positives = 351/707 (49%), Gaps = 94/707 (13%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G   + L  ++ MQ+     D +  P++ KAC  L     G ++H  V+  G     ++ 
Sbjct: 28  GAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSVVVNGLSHDSYIG 87

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           SSLI  Y K G +   RKVFD M+ RNVV W ++I  Y + G  + A  +F +M   G++
Sbjct: 88  SSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQ 147

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           PT V++ S+L     +  L      H + +++G E D  L +S++N Y K G + DA  +
Sbjct: 148 PTSVTLLSLLPG---ISKLPLLLCLHCLIILHGFESDLALSNSMVNMYGKCGRIADARRL 204

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVV-------------------------------- 368
           F  +  RDIV+WN L+++Y + G ++ +                                
Sbjct: 205 FQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDL 264

Query: 369 --------------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                               V S++V +Y +C  +D A +VF S   +DVV+W  +++  
Sbjct: 265 RLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGL 324

Query: 409 ADLGRSGEASRLFYQM--------------------QL---------------EGISPNI 433
                + +A  +FYQM                    QL               +GI  +I
Sbjct: 325 VQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDI 384

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
            + NS++  + +  ++ ++  +F +M    V+ +L++W  +++G  +N   ++ I FF E
Sbjct: 385 PAQNSLVTMYAKCNKLQQSCSIFNKM----VEKDLVSWNAIVAGHAKNGYLSKGIFFFNE 440

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M ++ ++P + T+T  L AC    +L  G+ IH +++R  L       T+LVDMY KCGN
Sbjct: 441 MRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGN 500

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +  A++ FD    ++L  ++ +I GY  +G    AL  +      G++P+ + F ++L+A
Sbjct: 501 LENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSA 560

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           CSH GL+++GL ++  M  D ++ P++EH  CVV+LLSR G +DEA      M  +P   
Sbjct: 561 CSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDLLSRAGKVDEAYSFYKMMFKEPSIV 620

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           ++G LL  C  +   EL + I+  + +L+P +PGN+V L+N+YA+  RW+ V +    M+
Sbjct: 621 VLGMLLDACRVNGRVELGKVIARDMFELKPVDPGNFVQLANSYASMSRWDGVEKAWTQMR 680

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
             GL+K PG S I++      F A   SHPK E+I  T+  L  ++R
Sbjct: 681 SLGLKKYPGWSSIEVHGTTFTFFASHNSHPKIEKIILTVKALSKNIR 727


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/567 (33%), Positives = 322/567 (56%), Gaps = 31/567 (5%)

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
            G + +AR++FD    R+VV+W +M+  Y + G   EA  + +           V+ T++
Sbjct: 52  AGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHR---PDARRNVVTWTAL 108

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERD 348
           LS  A    +DE +     A+ + M   NV+  ++++  Y+  G +  A  +F  M  RD
Sbjct: 109 LSGYARARRVDEAR-----ALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRD 163

Query: 349 IVTWNLLIASYVQSGQSD-------------VVVASSIVDMYAKCERIDNAKQVFNSIIL 395
             +WN+L+A+ V+SG  D             V+  ++++   A+    D A+ +F+ +  
Sbjct: 164 AGSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPE 223

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
           R+VV WN +++ YA   R  EA  LF  M       ++ SWN +I GF++N  + +A+++
Sbjct: 224 RNVVSWNAMISGYARNLRIDEALDLFMNMP----ERDVASWNIMITGFIQNKDLKKAQEL 279

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +M     + N+++WTT+++G  Q +    A+  F  ML  GI+P+  T   A+ A ++
Sbjct: 280 FDEMP----KRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSN 335

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +A L  G+ +H  + +        I +SL+ +YAKCG I  A++VFD+S  K++  +N M
Sbjct: 336 LAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGM 395

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I+ YA HG  VEA+AL++ +Q+    P+ +T+  +L+ACSH+GLV+EGL +F  M  D  
Sbjct: 396 IAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKS 455

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS-LLSTCVKSNETELAEYI 694
           +    EH+ C+++L SR G LD+A R+I  +   P +  + S LL  C       + +  
Sbjct: 456 IAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLA 515

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           + +LL+ EPDN G Y  LSN YA++G+W E +++R  M ++GL+K PGCSWI++  ++HV
Sbjct: 516 ARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIELANKVHV 575

Query: 755 FVACDRSHPKTEEIYATLALLGMHVRL 781
           FVA D+SH ++E IY+ L  +   +R+
Sbjct: 576 FVARDKSHSESELIYSLLQDIHHMMRM 602



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 168/400 (42%), Gaps = 54/400 (13%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS L++     EA  L   M  RN               V    M +G   + RI
Sbjct: 197 SWTTMISGLARSGSADEARALFDGMPERN--------------VVSWNAMISGYARNLRI 242

Query: 106 LKNGDFF----ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG 161
            +  D F     R+      ++  + +   L  A  LF  +  +NV SW  ++    +  
Sbjct: 243 DEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGN 302

Query: 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVAS 221
            SE AL  F  M  DG+ P+       + A   L  +  G+ VH  + K  F    F+ S
Sbjct: 303 ESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIES 362

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           SL+ +Y KCG++  ARKVFD    ++V++WN MI  Y  +G   EAI ++ +M     +P
Sbjct: 363 SLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKP 422

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG------SSIINFYSKVGLLE 335
             V+   +LSA ++   +DEG     + +   M  D  +       S +I+  S+ G L+
Sbjct: 423 NDVTYVGLLSACSHSGLVDEG-----LRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLD 477

Query: 336 DAEVVFS--RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC---ERIDNAKQVF 390
           DA+ + +  ++       W+ L+      G        SI D+ A+       DNA    
Sbjct: 478 DAKRLINGLKLKPTSSTVWSALLGGCNAHGN------ESIGDLAARNLLEAEPDNAGTY- 530

Query: 391 NSIILRDVVLWNTLLA-AYADLGRSGEASRLFYQMQLEGI 429
                       TLL+  YA  G+  EA+++  +M   G+
Sbjct: 531 ------------TLLSNIYASAGKWKEAAKIRSEMNDRGL 558



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 186/436 (42%), Gaps = 60/436 (13%)

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           A   R+ +A+++F+    RDVV W  ++AAYA  G+  EAS L ++        N+++W 
Sbjct: 50  AAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHR---PDARRNVVTWT 106

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           +++ G+ R  +++EA+ +F +M     + N+++W T++           A   F  M   
Sbjct: 107 ALLSGYARARRVDEARALFDRMP----ERNVVSWNTMLEAYASAGRMGAACALFDGMPVR 162

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
                  +    L+A     ++   R +   +   ++   T +++ L    A+ G+  +A
Sbjct: 163 ----DAGSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGL----ARSGSADEA 214

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI----------------- 600
           + +FD  P + +  +NAMISGYA +    EAL LF N+ ++ +                 
Sbjct: 215 RALFDGMPERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLK 274

Query: 601 ----------DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
                       + +++T ++N C         L++F GM  D  ++P+   F   V+  
Sbjct: 275 KAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVD-GIRPNQVTFLGAVDAG 333

Query: 651 SRCGNLDEALRV---ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707
           S    L E  +V   I   P   D  I  SL+    K  E  LA  + +  L  E D   
Sbjct: 334 SNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFD--LSGEKDVI- 390

Query: 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN--------PGCS---WIQIGEELHVFV 756
           ++  +  AYA  G   E   + + M+E   + N          CS    +  G  +  ++
Sbjct: 391 SWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYM 450

Query: 757 ACDRSHPKTEEIYATL 772
           A D+S    +E Y+ L
Sbjct: 451 AKDKSIAVRDEHYSCL 466



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 183/439 (41%), Gaps = 91/439 (20%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN    T L+  YA+   +D A  LF R+  +NV SW  ++      G    A   F  M
Sbjct: 100 RNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGM 159

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
                   N +L  ++++    G +   R +   + +      V   +++I    + G  
Sbjct: 160 PVRDAGSWNILLAALVRS----GTMDEARRLFERMPERN----VMSWTTMISGLARSGSA 211

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT------ 287
           +EAR +FDGM  RNVV+WN+MI GY +N   +EA+ +F  M    V    + +T      
Sbjct: 212 DEARALFDGMPERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNK 271

Query: 288 ---------------SILSASANLDALDEGKQAH-AVAVINGM----------------- 314
                          +++S +  ++   +G ++  A+ V NGM                 
Sbjct: 272 DLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVD 331

Query: 315 -----------------------ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
                                  + DN + SS++  Y+K G +  A  VF    E+D+++
Sbjct: 332 AGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVIS 391

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
           WN +IA+Y   G          V+  A  E++   +   N       V +  LL+A +  
Sbjct: 392 WNGMIAAYAHHGAG--------VEAIALYEKMQENRYKPND------VTYVGLLSACSHS 437

Query: 412 GRSGEASRLF-YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
           G   E  R+F Y  + + I+     ++ +I    R G++++AK +   +  L ++P   T
Sbjct: 438 GLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRL---INGLKLKPTSST 494

Query: 471 -WTTLISGLTQNSCGNEAI 488
            W+ L+ G   N+ GNE+I
Sbjct: 495 VWSALLGGC--NAHGNESI 511


>gi|242035425|ref|XP_002465107.1| hypothetical protein SORBIDRAFT_01g032140 [Sorghum bicolor]
 gi|241918961|gb|EER92105.1| hypothetical protein SORBIDRAFT_01g032140 [Sorghum bicolor]
          Length = 805

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 215/759 (28%), Positives = 384/759 (50%), Gaps = 102/759 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           L Q C    D+ + +++HAR+L  G    R+  + +++++ YA    L      F     
Sbjct: 52  LFQNCT---DVRSLKKLHARVLTLG--LGRDVILGSEILICYASLGVLCKTRLCFHGFLN 106

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
            ++  W ++I    R G  E+A++ +  ++   +  D   +   LK+C  L  +  G+ +
Sbjct: 107 DDLAQWNSVIVDIFRAGYPEEAILLYRGLKLRQIGLDEKTVTFGLKSCTELRNLLLGKGM 166

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN--G 262
           H   LK+G +   FV SSL+ +Y K   + +++K F+ ++ +++V++ SMI GY +N   
Sbjct: 167 HADSLKLGLNRDKFVGSSLVGLYSKLARMGDSQKAFEEILDKDIVSYTSMITGYSENMDS 226

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL-DNVLG 321
            +  A  +  +M+   +E  RV++ S+L  + NL A+ EGK  H  +   G+ + D VLG
Sbjct: 227 TSWNAFEIASDMSQSNLEVNRVTLVSLLQVAGNLGAIREGKSVHCYSTRRGIGVSDEVLG 286

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------------- 365
           +S+++ Y + G  + A      +V+  + +WN ++A  V++GQS                
Sbjct: 287 TSLVHMYMQCGAYQLASASLKNLVQ-SVASWNAMLAGLVRTGQSGNAIHHFSVMLHEHKV 345

Query: 366 -------------------------------------DVVVASSIVDMYAKCERIDNAKQ 388
                                                DVV+A++++++Y KC RI ++K 
Sbjct: 346 VPDSVTYANLISACAELCNSGYAASVHAYLIRRSIPLDVVLATALIEVYMKCTRIMSSKH 405

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL------- 441
           +F+ ++++D+V +NT++  Y   G   EA  L  +M  E ++PN ++  S++        
Sbjct: 406 LFDQLVVKDLVSYNTMIYGYLQNGMVNEAIALLKEMVAECVAPNFVTILSLLAAIADHKD 465

Query: 442 --------------GFLRN--------------GQMNEAKDMFLQMQSLGVQPNLITWTT 473
                         GF  N              G++  A+ +F  ++    + NLI+WT 
Sbjct: 466 FVRGRWIHGFSIRHGFFSNVDIANQIIRMYSGCGKITSARTIFASLE----KKNLISWTV 521

Query: 474 LISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           ++ G      G E +  FQ +++  G KP + T+  A+ A +++  L+  + IH ++ R 
Sbjct: 522 MMMGCLFCGHGGETVELFQLLMQQHGNKPDSVTVMTAIQAVSELGHLKGVKQIHCFVYRA 581

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
            L   T  + SL+  YAKCG +  +  +F     ++L  +N+MIS Y MHG   + L +F
Sbjct: 582 LLEKDTKTINSLITAYAKCGRLDLSVGLFLSLEHRDLDSWNSMISAYGMHGFYTKVLEMF 641

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           K +++  I+PD +TF+++L+ACSHAGL+ EGL +F  M S + V P  EH+GC+V+LLSR
Sbjct: 642 KLMEEGNINPDGLTFSSVLSACSHAGLIKEGLHIFQSMTSIYSVLPQEEHYGCIVDLLSR 701

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G+L+E  ++I     +  + ++ +LLS C     T L + IS  LL+L   NPG Y  +
Sbjct: 702 AGHLEEGYKLIKLSTLNDKSSVLCALLSACRTYGNTMLGQVISNELLELGQQNPGTYALI 761

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           S  +A  G+WN+ + +R+  KE G RK PG S I+  E+
Sbjct: 762 SEVFAQKGQWNKSANIRNRAKENGSRKLPGSSLIESVEQ 800


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 315/561 (56%), Gaps = 35/561 (6%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           + LI  Y K   + EARK FD M  RNVV+W +M+ GYVQ GL  EA  +F++M  + V 
Sbjct: 82  NGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNV- 140

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
              VS T +L     +  +DE +    +  +     D V  +++I+ Y + G L +A  +
Sbjct: 141 ---VSWTVMLGGLIQVRRIDEARGLFDIMPVK----DVVARTNMISGYCQEGRLAEAREL 193

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  M  R++++W  +I+ YVQ+GQ DV                  A+++F  +  ++ V 
Sbjct: 194 FDEMPRRNVISWTTMISGYVQNGQVDV------------------ARKLFEVMPEKNEVS 235

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           W  +L  Y   GR  EAS LF  M ++ +    ++ N++ILGF +NG++ +A+ +F Q++
Sbjct: 236 WTAMLMGYTQGGRIEEASELFDAMPVKAV----VACNAMILGFGQNGEVAKARQVFDQIR 291

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
               + +  TW+ +I    +     EA+  F  M   G++ +  ++   LS C  +ASL 
Sbjct: 292 ----EKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLD 347

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
           +GR +H  L++        + + L+ MY KCG++ +A+++FD    K++ ++N++I+GYA
Sbjct: 348 HGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYA 407

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            HGL  EAL +F  +   G+  D +TF  +L+ACS+ G V EGLE+F  M S + V+P  
Sbjct: 408 QHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKT 467

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EH+ C+V+LL R G +++A+ +I  MP + DA I G+LL  C       LAE  ++ LLQ
Sbjct: 468 EHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQ 527

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV-ACD 759
           LEP N G Y+ LSN YA+ GRW +V+++R  M+ K + K+PGCSWI++ + +H+F     
Sbjct: 528 LEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVS 587

Query: 760 RSHPKTEEIYATLALLGMHVR 780
             HP+   I   L  L   +R
Sbjct: 588 TKHPELSSIMKMLEKLDGMLR 608



 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 157/300 (52%), Gaps = 17/300 (5%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A ++F ++R K+  +W+A+I +  R G   +AL  F  MQ +GV  +   L +VL  C +
Sbjct: 283 ARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCAS 342

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           L  +  GR VH  ++K  FD  VFVAS LI MY KCGDL +AR++FD    +++V WNS+
Sbjct: 343 LASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSI 402

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVING 313
           I GY Q+GL EEA++VF+EM   G+    V+   +LSA +    + EG +   ++     
Sbjct: 403 ITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYL 462

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASS 372
           +E      + +++   + GL+ DA  +  +M VE D + W  L+      G     +  +
Sbjct: 463 VEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALL------GACRTHMNMN 516

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           + ++ AK       K     I+L ++         YA  GR G+ + L   M+++ +S +
Sbjct: 517 LAEVAAKKLLQLEPKNAGPYILLSNI---------YASKGRWGDVAELRRNMRVKKVSKS 567



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 214/494 (43%), Gaps = 65/494 (13%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +    +E  + EA  L  +M  +N      + G L+Q  V + D   G      I
Sbjct: 111 SWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQ--VRRIDEARGL---FDI 165

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +   D  AR     T ++  Y +   L  A  LF  +  +NV SW  +I           
Sbjct: 166 MPVKDVVAR-----TNMISGYCQEGRLAEARELFDEMPRRNVISWTTMIS---------- 210

Query: 166 ALIGFVEMQEDGVSPDNF-VLPN---VLKACGALGWVGFGRAVHGYVLKVGFDG----CV 217
              G+V+  +  V+   F V+P    V      +G+   GR      L   FD      V
Sbjct: 211 ---GYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASEL---FDAMPVKAV 264

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
              +++I  +G+ G++ +AR+VFD +  ++   W++MI  Y + G   EA+ +F  M  E
Sbjct: 265 VACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQRE 324

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           GV+    S+ S+LS  A+L +LD G+Q HA  V +  + D  + S +I  Y K G L  A
Sbjct: 325 GVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKA 384

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI---- 393
             +F R   +DIV WN +I  Y Q G                   ++ A QVF+ +    
Sbjct: 385 RQIFDRFSPKDIVMWNSIITGYAQHGL------------------VEEALQVFHEMCSSG 426

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG-ISPNIISWNSVILGFLRNGQMNEA 452
           +  D V +  +L+A +  G+  E   +F  M+ +  + P    +  ++    R G +N+A
Sbjct: 427 MATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDA 486

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS-----TTTIT 507
            D+   +Q + V+ + I W  L+     +   N A +  +++L+   K +      + I 
Sbjct: 487 MDL---IQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIY 543

Query: 508 CALSACTDVASLRN 521
            +     DVA LR 
Sbjct: 544 ASKGRWGDVAELRR 557



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 156/346 (45%), Gaps = 37/346 (10%)

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
           + +N+ +A YA +G+   A R+F +M  +GI    +SWNS++ G+ +N +  EA+ +F +
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGI----VSWNSMVAGYFQNNRPREARYLFDK 72

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           M     + N ++W  LISG  +N   +EA   F  M E  +     + T  +        
Sbjct: 73  MP----ERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNV----VSWTAMVRGYVQEGL 124

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           +     +   +   ++   T ++  L+ +      I +A+ +FDI P K++     MISG
Sbjct: 125 VSEAETLFWQMPEKNVVSWTVMLGGLIQVR----RIDEARGLFDIMPVKDVVARTNMISG 180

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           Y   G   EA  LF  + ++ +    I++T +++     G V+   +LF  M   ++V  
Sbjct: 181 YCQEGRLAEARELFDEMPRRNV----ISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSW 236

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDP----DAHIIGSLLSTCVKSNETELAEYI 694
           +    G      ++ G ++EA  +   MP       +A I+G       ++ E   A  +
Sbjct: 237 TAMLMG-----YTQGGRIEEASELFDAMPVKAVVACNAMILG-----FGQNGEVAKARQV 286

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            +   Q+   + G + A+   Y   G   E   +  +M+ +G++ N
Sbjct: 287 FD---QIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSN 329


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 203/638 (31%), Positives = 342/638 (53%), Gaps = 70/638 (10%)

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A   +  M  + +  DN+  P +++AC         + VH +VLK+GFD  V+V ++LI+
Sbjct: 197 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 256

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
            +  C ++ +A +VF+     + V+WNS++ GY++ G  EEA  ++++M      P R  
Sbjct: 257 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM------PERSI 310

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           + S                                 +S+I  +   GL+ +A  +F  M+
Sbjct: 311 IAS---------------------------------NSMIVLFGMRGLVVEACKLFDEML 337

Query: 346 ERDIVTWNLLIASYVQSGQS-----------------DVVVASSIVDMYAKCERIDNAKQ 388
           E+D+VTW+ LIA + Q+                    D VVA S +   A    + N  +
Sbjct: 338 EKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANL-LVVNMGK 396

Query: 389 VFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           + +S+ L+      + L N L+  Y+  G    A +LF +  L     ++ISWNS+I G+
Sbjct: 397 LIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLL----DLISWNSMISGY 452

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
           L+   ++ AK +F  M     + ++++W+++ISG  QN   +E +  FQEM  +G KP  
Sbjct: 453 LKCNLVDNAKAIFDSMP----EKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDE 508

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
           TT+   +SAC  +A+L  G+ +H Y+ R+ L +   + T+L+DMY KCG +  A  VF  
Sbjct: 509 TTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYG 568

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
              K +  +NA+I G AM+GL   +L +F N+++  + P+ ITF  +L AC H GLV+EG
Sbjct: 569 MIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEG 628

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
              F  M  DH+++P+++H+GC+V+LL R G L EA  ++  MP  PD    G+LL  C 
Sbjct: 629 QHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACK 688

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
           K  ++E+   +   L++L+PD+ G +V LSN YA+ G+W++V ++R +M +  + K PGC
Sbjct: 689 KHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGC 748

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
           S I+    +H F+A D++HP  + I   L  + M ++L
Sbjct: 749 SMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKL 786



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 147/590 (24%), Positives = 256/590 (43%), Gaps = 98/590 (16%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  L+Q C  +R  +  +Q+H  +LK G  F  + YV   L+  ++ C  +  A R+F  
Sbjct: 216 YPLLIQACSIRRSEWEAKQVHNHVLKLG--FDSDVYVRNTLINCFSVCSNMTDACRVFNE 273

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
             V +  SW +I+     +G  E+A   + +M E  +   N                   
Sbjct: 274 SSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASN------------------- 314

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
                               S+I ++G  G + EA K+FD M+ +++V W+++I  + QN
Sbjct: 315 --------------------SMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQN 354

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
            + EEAIR F  M   GV    V   S LSA ANL  ++ GK  H++++  G E    L 
Sbjct: 355 EMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQ 414

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +++I  YSK G +  A  +F      D+++WN +I+ Y+                  KC 
Sbjct: 415 NALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYL------------------KCN 456

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +DNAK +F+S+  +DVV W+++++ YA      E   LF +MQ+ G  P+  +  SVI 
Sbjct: 457 LVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVIS 516

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLI-------------------------------T 470
              R   + + K +   ++  G+  N+I                               T
Sbjct: 517 ACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIST 576

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W  LI GL  N     ++  F  M +  + P+  T    L AC  +  +  G+  H Y +
Sbjct: 577 WNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQH-HFYSM 635

Query: 531 RHDLCLPTPI--VTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVE 587
            HD  +   +     +VD+  + G + +A+ + +  P + ++  + A++     HG +  
Sbjct: 636 IHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEM 695

Query: 588 ALALFKNLQQKGIDPDSITFTNIL-NACSHAGLVNEGLELFVGMFSDHQV 636
              + + L +  + PD   F  +L N  +  G  ++ LE+  GM + H+V
Sbjct: 696 GRRVGRKLIE--LQPDHDGFHVLLSNIYASKGKWDDVLEI-RGMMTKHRV 742



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 159/299 (53%), Gaps = 10/299 (3%)

Query: 74  NFQIGPEIYGELLQGCVYKRDMYT--GQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131
           + +IG E Y  L    +Y   MY+  G  + AR L + + +  +      ++  Y KC+ 
Sbjct: 402 SLKIGTESYINLQNALIY---MYSKCGDIMVARKLFD-EAYLLDLISWNSMISGYLKCNL 457

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           +D A  +F  +  K+V SW+++I    +  L ++ L  F EMQ  G  PD   L +V+ A
Sbjct: 458 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 517

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C  L  +  G+ VH Y+ + G    V + ++LIDMY KCG +E A +VF GMI + +  W
Sbjct: 518 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTW 577

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N++I+G   NGL E ++ +F  M    V P  ++   +L A  ++  +DEG Q H  ++I
Sbjct: 578 NALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEG-QHHFYSMI 636

Query: 312 NGMELD-NVLG-SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDV 367
           +  ++  NV     +++   + G L++AE + +RM +  D+ TW  L+ +  + G S++
Sbjct: 637 HDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEM 695



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 16/233 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++     E + L  EM+   F+        ++  C     +  G+ +HA I
Sbjct: 475 SWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYI 534

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            +NG     N  + T L+  Y KC  ++ A  +F  +  K + +W A+I      GL E 
Sbjct: 535 KRNG--LTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVES 592

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR-----AVHGYVLK--VGFDGCVF 218
           +L  F  M++  V+P+      VL AC  +G V  G+      +H + ++  V   GC  
Sbjct: 593 SLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGC-- 650

Query: 219 VASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRV 270
               ++D+ G+ G L+EA ++ + M +  +V  W +++    ++G +E   RV
Sbjct: 651 ----MVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRV 699



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 83/208 (39%), Gaps = 39/208 (18%)

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           Q +  + A   ++ ML   +     T    + AC+   S    + +H ++++        
Sbjct: 190 QTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVY 249

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDIS-------------------------------PSKE 568
           +  +L++ ++ C N+  A RVF+ S                               P + 
Sbjct: 250 VRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERS 309

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           +   N+MI  + M GL VEA  LF  + +K    D +T++ ++       +  E +  FV
Sbjct: 310 IIASNSMIVLFGMRGLVVEACKLFDEMLEK----DMVTWSALIACFQQNEMYEEAIRTFV 365

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           GM   H++   ++     V+ LS C NL
Sbjct: 366 GM---HKIGVMVDEV-VAVSALSACANL 389


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 209/700 (29%), Positives = 347/700 (49%), Gaps = 102/700 (14%)

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           + F W +++    R       L     M+  G  P  F  P V  A   LG +  G AVH
Sbjct: 71  DAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVH 130

Query: 206 GYVLKVGF---DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            Y ++ G    DG V VASSL+ MY +CG + +A ++FD M  R+VVAW ++I G V NG
Sbjct: 131 AYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNG 190

Query: 263 LNEEAIRVFYEMTLE----GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
              E +     M       G  P   ++ S L A   L  L  G   H   V  G+    
Sbjct: 191 QCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCP 250

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------ 366
            + SS+ + Y+K    EDA ++F  + E+D+V+W  LI +Y ++G ++            
Sbjct: 251 SVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEES 310

Query: 367 ----------------------------------------VVVASSIVDMYAKCERIDNA 386
                                                   V++ ++++ MYAKC+++D A
Sbjct: 311 GLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIA 370

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE------------------- 427
             VF  +  RD   W++++ AY   G   +   L+ +MQ                     
Sbjct: 371 ATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSC 430

Query: 428 --------GISPNIIS-----------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
                   G S +  S            N++I  + R G  + A+ +F  +++     ++
Sbjct: 431 SRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKT----KDV 486

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           +TW+ LIS  +      +A+L + +ML  G+KP++ T+   +S+C ++A+L +G  IH +
Sbjct: 487 VTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSH 546

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +    L     I T+LVDMY KCG +  A+++FD    +++  +N MISGY MHG A++A
Sbjct: 547 VKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQA 606

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L LF  +++  + P+S+TF  IL+AC HAGLV++G ELF  M  ++ ++P+++H+ C+V+
Sbjct: 607 LKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVD 665

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL + G+L EA  V+  MP +PD  I G+LL  C   +  E+   +++     +P+N G 
Sbjct: 666 LLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGY 725

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           Y+ +SN+Y ++ +WNE+ ++RD+MK  G+ K+ G S I I
Sbjct: 726 YILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI 765



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 225/433 (51%), Gaps = 22/433 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I +  +     +AV+L   M+    Q    +   LL G      +  G+  HA I
Sbjct: 283 SWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAI 342

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++    F  +  +   L+  YAKC  +D+A+ +F  L  ++  SW++++   C+ GL  K
Sbjct: 343 VRRN--FGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLK 400

Query: 166 ALIGFVEMQ---EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
            L  + EMQ   +D    D   L +++ +C  LG +  G++ H Y +K        VA++
Sbjct: 401 CLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANA 460

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI MYG+CG+ + ARK+F  +  ++VV W+++I  Y   G +++A+ ++ +M  EGV+P 
Sbjct: 461 LISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPN 520

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
             ++ S++S+ ANL AL+ G+  H+     G+E D  + +++++ Y K G L  A  +F 
Sbjct: 521 SATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFD 580

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            M+ERD+VTWN++I+ Y   G+     A   + +++  ER  N K   NS+         
Sbjct: 581 SMLERDVVTWNVMISGYGMHGE-----AIQALKLFSMMER-GNVKP--NSLTFL------ 626

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
            +L+A    G   +   LF +M+   + PN+  +  ++    ++G + EA+D+   + ++
Sbjct: 627 AILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDV---VSAM 683

Query: 463 GVQPNLITWTTLI 475
            ++P+   W TL+
Sbjct: 684 PIEPDGGIWGTLL 696



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/402 (28%), Positives = 201/402 (50%), Gaps = 34/402 (8%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           GQ  H   +K+      N  V   L+  Y +C   DVA ++F  ++ K+V +W+A+I   
Sbjct: 439 GQSAHCYSIKH--LAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSY 496

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
             +G S+ AL+ + +M  +GV P++  L +V+ +C  L  +  G  +H +V  VG +  +
Sbjct: 497 SHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDL 556

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            + ++L+DMY KCG L  ARK+FD M+ R+VV WN MI GY  +G   +A+++F  M   
Sbjct: 557 SICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERG 616

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            V+P  ++  +ILSA  +   +D+G++         +E +    + +++   K G L++A
Sbjct: 617 NVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEA 676

Query: 338 EVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           E V S M +E D   W  L+             A  + D +    R+  AK+ F S    
Sbjct: 677 EDVVSAMPIEPDGGIWGTLLG------------ACKMHDNFEMGLRV--AKKAFASDPEN 722

Query: 397 D---VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV-ILGFLRNGQMNEA 452
           D   +++ N+    Y    +  E  +L   M+  G+  + I W+++ I GF++N      
Sbjct: 723 DGYYILMSNS----YGSAEKWNEIEKLRDMMKNHGVEKS-IGWSTIDICGFMKNQLTQWQ 777

Query: 453 KDMFLQMQSLGVQPNLIT-----WT-TLISGLTQNSCGNEAI 488
             +F Q +    +   I+     W+ ++++GLT+   GNE +
Sbjct: 778 HSLFEQSEFRSSEDMCISFVSGIWSESMVNGLTE--WGNEVV 817



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 18/214 (8%)

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
           P+   W +L+    + S     +   + M  +G +PS  T     SA  ++ +L  G A+
Sbjct: 70  PDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAV 129

Query: 526 HGYLIRHDLCL---PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           H Y +R  L        + +SLV MYA+CG++  A R+FD  P +++  + A+ISG   +
Sbjct: 130 HAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCN 189

Query: 583 GLAVEALA----LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM-FSDHQVK 637
           G   E L+    + ++    G  P+S T  + L AC   G      EL VG       VK
Sbjct: 190 GQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLG------ELSVGTCLHGFGVK 243

Query: 638 PSMEHFGCVVNLL----SRCGNLDEALRVILTMP 667
             + H   VV+ L    ++C + ++A  +   +P
Sbjct: 244 AGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP 277


>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 206/707 (29%), Positives = 351/707 (49%), Gaps = 94/707 (13%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G   + L  ++ MQ+     D +  P++ KAC  L     G ++H  V+  G     ++ 
Sbjct: 28  GAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSVVVNGLSHDSYIG 87

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           SSLI  Y K G +   RKVFD M+ RNVV W ++I  Y + G  + A  +F +M   G++
Sbjct: 88  SSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQ 147

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           PT V++ S+L     +  L      H + +++G E D  L +S++N Y K G + DA  +
Sbjct: 148 PTSVTLLSLLPG---ISKLPLLLCLHCLIILHGFESDLALSNSMVNMYGKCGRIADARRL 204

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVV-------------------------------- 368
           F  +  RDIV+WN L+++Y + G ++ +                                
Sbjct: 205 FESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDL 264

Query: 369 --------------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                               V S++V +Y +C  +D A +VF S   +DVV+W  +++  
Sbjct: 265 RLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGL 324

Query: 409 ADLGRSGEASRLFYQM--------------------QL---------------EGISPNI 433
                + +A  +FYQM                    QL               +GI  +I
Sbjct: 325 VQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDI 384

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
            + NS++  + +  ++ ++  +F +M    V+ +L++W  +++G  +N   ++ I FF E
Sbjct: 385 PAQNSLVTMYAKCNKLQQSCSIFNKM----VEKDLVSWNAIVAGHAKNGYLSKGIFFFNE 440

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M ++ ++P + T+T  L AC    +L  G+ IH +++R  L       T+LVDMY KCGN
Sbjct: 441 MRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGN 500

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +  A++ FD    ++L  ++ +I GY  +G    AL  +      G++P+ + F ++L+A
Sbjct: 501 LENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSA 560

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           CSH GL+++GL ++  M  D ++ P++EH  CVV+LLSR G +DEA      M  +P   
Sbjct: 561 CSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDLLSRAGKVDEAYSFYKMMFKEPSIV 620

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           ++G LL  C  +   EL + I+  + +L+P +PGN+V L+N+YA+  RW+ V +    M+
Sbjct: 621 VLGMLLDACRVNGRVELGKVIARDMFELKPVDPGNFVQLANSYASMSRWDGVEKAWTQMR 680

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
             GL+K PG S I++      F A   SHPK E+I  T+  L  ++R
Sbjct: 681 SLGLKKYPGWSSIEVHGTTFTFFASHNSHPKIEKIILTVKALSKNIR 727


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 205/583 (35%), Positives = 313/583 (53%), Gaps = 58/583 (9%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           ++L+AC     +   + +H + LK   +    V   L  +Y  C  +  AR++FD +   
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           +V+ WN +I  Y  NG  + AI +++ M   GV P + +   +L A + L A+++G + H
Sbjct: 73  SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
           + A + G+E                                                 SD
Sbjct: 133 SHAKMFGLE-------------------------------------------------SD 143

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
           V V +++VD YAKC  +  A+++F+S+  RDVV WN ++A  +  G   +A +L  QMQ 
Sbjct: 144 VFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQE 203

Query: 427 EGISPNIISWNSVILGFLRNGQ-MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
           EGI PN    +S I+G L   Q +  A+ +F     +GV+ N ++W+ +I G   + C  
Sbjct: 204 EGICPN----SSTIVGVLPTCQCLLYARKIF---DVMGVR-NEVSWSAMIGGYVASDCMK 255

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
           EA+  F+ M  +GI P  TT+   L AC+ +A+L++G   HGYLI       T I  +L+
Sbjct: 256 EALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALI 315

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           DMY+KCG I  A+ VF+     ++  +NAMI GY +HGL +EAL LF +L   G+ PD I
Sbjct: 316 DMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDI 375

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           TF  +L++CSH+GLV EG   F  M  D  + P MEH  C+V++L R G +DEA   I  
Sbjct: 376 TFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRN 435

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MP +PD  I  +LLS C      EL E +S+ +  L P++ GN+V LSN Y+A+GRW++ 
Sbjct: 436 MPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDA 495

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           + +R   K+ GL+K PGCSWI+I   +H FV  D+SH +  +I
Sbjct: 496 AHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 538



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 214/455 (47%), Gaps = 36/455 (7%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  LL+ C+  + +   ++IH   LKN      +  V  KL   Y  C+ + +A RLF  
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTS--NADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +   +V  W  II      G  + A+  +  M   GV P+ +  P VLKAC  L  +  G
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             +H +    G +  VFV ++L+D Y KCG L EA+++F  M  R+VVAWN+MI G    
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN-VL 320
           GL ++A+++  +M  EG+ P   ++  +L     L         +A  + + M + N V 
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCL--------LYARKIFDVMGVRNEVS 240

Query: 321 GSSIINFYSKVGLLEDAEVVFSRM----VERDIVTWNLLIAS-----------------Y 359
            S++I  Y     +++A  +F  M    ++ D+ T   ++ +                  
Sbjct: 241 WSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI 300

Query: 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
           V+   +D ++ ++++DMY+KC +I  A++VFN +   D+V WN ++  Y   G   EA  
Sbjct: 301 VRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALG 360

Query: 420 LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGL 478
           LF+ +   G+ P+ I++  ++     +G + E +  F  M +   + P +     ++  L
Sbjct: 361 LFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDIL 420

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +    +EA  F + M     +P     +  LSAC
Sbjct: 421 GRAGLIDEAHHFIRNM---PFEPDVRIWSALLSAC 452


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 199/581 (34%), Positives = 305/581 (52%), Gaps = 63/581 (10%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L  A  VF+ +   N++ WN+M+ G+  +     A+ ++  M   G  P   S   +L +
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A   A +EG+Q HA  +  G  LD  + +S+I+ Y++ G LEDA  VF     RD+V+ 
Sbjct: 74  CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
             LI  Y   G                     +A++VF+ I  RDVV WN ++  Y + G
Sbjct: 134 TALITGYASRGD------------------FRSARKVFDEITERDVVSWNAMITGYVENG 175

Query: 413 RSGEASRLFYQMQLEGISPN----------------------IISW-------------- 436
           R  EA  LF +M    + P+                      + SW              
Sbjct: 176 RYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSL 235

Query: 437 ---NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
              N++I  + + G +  A  +F  +       ++++W TLI G T  +   EA+L FQE
Sbjct: 236 KIVNALIDLYSKCGDVETAFGLFEGLSC----KDVVSWNTLIGGYTHTNLYKEALLLFQE 291

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH--DLCLPTPIVTSLVDMYAKC 551
           ML +G  P+  T+   L AC  + ++  GR IH Y+ +    +   T + TSL+DMYAKC
Sbjct: 292 MLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKC 351

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G+I  A +VF+    + L  +NAMI G+AMHG A  A  LF  ++   ++PD ITF  +L
Sbjct: 352 GDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLL 411

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
           +ACSH+GL++ G ++F  M  D+ + P +EH+GC+++LL   G   EA  +I TMP +PD
Sbjct: 412 SACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPD 471

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
             I  SLL  C K    ELAE  ++ L+++EP+N G+YV LSN YA +GRW +V++VR +
Sbjct: 472 GVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGV 531

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           +  KG++K PGCS I++   +H F+  D+ HP+  EIY  L
Sbjct: 532 LNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHML 572



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 141/509 (27%), Positives = 241/509 (47%), Gaps = 73/509 (14%)

Query: 69  EMKCRNFQIG--PEIYGE--LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVV 124
           EM  R   +G  P  Y    LL+ C   +    G+QIHA++LK G    R  YV T L+ 
Sbjct: 50  EMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDR--YVHTSLIS 107

Query: 125 FYAK---------------------CDAL----------DVASRLFCRLRVKNVFSWAAI 153
            YA+                     C AL            A ++F  +  ++V SW A+
Sbjct: 108 MYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAM 167

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-- 211
           I      G  E+AL  F EM    V PD   L +V+ AC   G +  GR VH +V     
Sbjct: 168 ITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDD 227

Query: 212 --GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR 269
             GF   + + ++LID+Y KCGD+E A  +F+G+  ++VV+WN++I GY    L +EA+ 
Sbjct: 228 DHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALL 287

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV--AVINGMELDNVLGSSIINF 327
           +F EM   G  P  V++ S+L A A+L A+D G+  H      + G+  +  L +S+I+ 
Sbjct: 288 LFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDM 347

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAK 387
           Y+K G +E A  VF+ M+ R + +WN +I  +   G+     A++  D++++        
Sbjct: 348 YAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGR-----ANAAFDLFSR-------- 394

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRN 446
            +  + +  D + +  LL+A +  G      ++F  M Q   ++P +  +  +I     +
Sbjct: 395 -MRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHS 453

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST--- 503
           G   EA++M   + ++ ++P+ + W +L+    ++     A  F Q++++  I+P     
Sbjct: 454 GLFKEAEEM---IHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIK--IEPENSGS 508

Query: 504 ----TTITCALSACTDVASLR---NGRAI 525
               + I        DVA +R   NG+ +
Sbjct: 509 YVLLSNIYATAGRWEDVARVRGVLNGKGM 537



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 164/650 (25%), Positives = 273/650 (42%), Gaps = 114/650 (17%)

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
           +L V     D L  A  +F  ++  N+  W  ++  +        AL  +V M   G  P
Sbjct: 3   ELCVVSPHFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLP 62

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           +++  P +LK+C        GR +H  VLK+G     +V +SLI MY + G LE+ARKVF
Sbjct: 63  NSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVF 122

Query: 241 DG-------------------------------MIARNVVAWNSMIVGYVQNGLNEEAIR 269
           D                                +  R+VV+WN+MI GYV+NG  EEA+ 
Sbjct: 123 DASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALE 182

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA----VAVINGMELDNVLGSSII 325
           +F EM    V P   ++ S++SA A   +++ G+Q H+        +G      + +++I
Sbjct: 183 LFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALI 242

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY----------------VQSGQ--SDV 367
           + YSK G +E A  +F  +  +D+V+WN LI  Y                ++SG+  +DV
Sbjct: 243 DLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDV 302

Query: 368 VVAS------------------------------------SIVDMYAKCERIDNAKQVFN 391
            + S                                    S++DMYAKC  I+ A QVFN
Sbjct: 303 TLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFN 362

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
           S++ R +  WN ++  +A  GR+  A  LF +M+   + P+ I++  ++     +G ++ 
Sbjct: 363 SMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDL 422

Query: 452 AKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA- 509
            + +F  M Q   + P L  +  +I  L  +    EA    +EM+ T        I C+ 
Sbjct: 423 GRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEA----EEMIHTMPMEPDGVIWCSL 478

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG---NIHQAKRVFDISPS 566
           L AC    +L    +    LI+ +       V  L ++YA  G   ++ + + V +    
Sbjct: 479 LKACKKHGNLELAESFAQKLIKIEPENSGSYVL-LSNIYATAGRWEDVARVRGVLNGKGM 537

Query: 567 KELP---------VYNAMISGYAMHGLAVEALALFK----NLQQKGIDPDSITFTNILNA 613
           K++P         V +  I G  +H    E   + +     L++ G  PD+      +  
Sbjct: 538 KKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEE 597

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
               G +    E     F     KP  +    +V  L  C N  EA ++I
Sbjct: 598 EWKEGALRHHSEKLAIAFGLISTKPGTKL--TIVKNLRVCRNCHEATKLI 645



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 206/445 (46%), Gaps = 43/445 (9%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+   +  +  EA++L  EM   N +        ++  C     +  G+Q+H+ +
Sbjct: 163 SWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWV 222

Query: 106 LKNGDF--FARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
             + D   F+ +  +   L+  Y+KC  ++ A  LF  L  K+V SW  +IG      L 
Sbjct: 223 DDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLY 282

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVAS 221
           ++AL+ F EM   G  P++  L +VL AC  LG +  GR +H Y+ K   G      + +
Sbjct: 283 KEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRT 342

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           SLIDMY KCGD+E A +VF+ M+ R++ +WN+MI G+  +G    A  +F  M    VEP
Sbjct: 343 SLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEP 402

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLE 335
             ++   +LSA ++   LD G+Q     +   M  D  L   +      I+     GL +
Sbjct: 403 DDITFVGLLSACSHSGLLDLGRQ-----IFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFK 457

Query: 336 DAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
           +AE +   M +E D V W  L+ +  + G  ++ +A S      K E  ++   V  S I
Sbjct: 458 EAEEMIHTMPMEPDGVIWCSLLKACKKHG--NLELAESFAQKLIKIEPENSGSYVLLSNI 515

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP----NIISWNSVILGFLRNGQMN 450
                        YA  GR  + +R+   +  +G+      + I  +SV+  F+   +++
Sbjct: 516 -------------YATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLH 562

Query: 451 EAK--------DMFLQMQSLGVQPN 467
             +        +M +Q++  G  P+
Sbjct: 563 PRRREIYHMLEEMDVQLEEAGFAPD 587


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 235/743 (31%), Positives = 391/743 (52%), Gaps = 34/743 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQ-GC-VYKRDMYTGQQIHARILKN 108
           IS  S+    R A  + + M+    +     +G L+   C + + D+   +QI   I K+
Sbjct: 178 ISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKS 237

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G     + +V + LV  +AK  +L  A ++F ++  +N  +   ++    R    E+A  
Sbjct: 238 G--LLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATK 295

Query: 169 GFVEMQED-GVSPDNFV-LPNVLKACGALGWVGF--GRAVHGYVLKVGF-DGCVFVASSL 223
            F++M     VSP+++V L +          VG   GR VHG+V+  G  D  V + + L
Sbjct: 296 LFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGL 355

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           ++MY KCG + +AR+VF  M  ++ V+WNSMI G  QNG   EA+  +  M    + P  
Sbjct: 356 VNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGS 415

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            ++ S LS+ A+L     G+Q H  ++  G++L+  + ++++  Y++ G L +   +FS 
Sbjct: 416 FTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSS 475

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           M E D V+WN +I +  +S +S   +  ++V  +   +R   A Q  N I    V+    
Sbjct: 476 MPEHDQVSWNSIIGALARSERS---LPEAVV-CFLNAQR---AGQKLNRITFSSVLS-AV 527

Query: 404 LLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
              ++ +LG+        + + L+  I+    + N++I  + + G+M+  + +F +M   
Sbjct: 528 SSLSFGELGKQ------IHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAE- 580

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
             + + +TW ++ISG   N    +A+     ML+TG +  +      LSA   VA+L  G
Sbjct: 581 --RRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERG 638

Query: 523 RAIHGYLIRHDLCLPTPIV--TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
             +H   +R   CL + +V  ++LVDMY+KCG +  A R F+  P +    +N+MISGYA
Sbjct: 639 MEVHACSVR--ACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYA 696

Query: 581 MHGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
            HG   EAL LF+ ++  G   PD +TF  +L+ACSHAGL+ EG + F  M   + + P 
Sbjct: 697 RHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPR 756

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN--ETELAEYISEH 697
           +EHF C+ ++L R G LD+    I  MP  P+  I  ++L  C ++N  + EL +  +E 
Sbjct: 757 IEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEM 816

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVA 757
           L QLEP+N  NYV L N YAA GRW ++ + R  MK+  ++K  G SW+ + + +H+FVA
Sbjct: 817 LFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVA 876

Query: 758 CDRSHPKTEEIYATLALLGMHVR 780
            D+SHP  + IY  L  L   +R
Sbjct: 877 GDKSHPDADVIYKKLKELNRKMR 899



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 179/737 (24%), Positives = 325/737 (44%), Gaps = 118/737 (16%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
            +Q CV  R     +  H+R+ KN     ++ Y+   L+  Y +      A ++F  + +
Sbjct: 9   FVQSCVGHRG--AARFFHSRLYKNR--LDKDVYLCNNLINAYLETGDSVSARKVFDEMPL 64

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG--FGR 202
           +N  SWA I+    R G  ++AL+   +M ++G+  + +   +VL+AC  +G VG  FGR
Sbjct: 65  RNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGR 124

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKC-GDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
            +HG + K+ +     V++ LI MY KC G +  A   F  +  +N V+WNS+I  Y Q 
Sbjct: 125 QIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQA 184

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI--NGMELDNV 319
           G    A R+F  M  +G  PT  +  S+++ + +L   D       +  I  +G+  D  
Sbjct: 185 GDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLF 244

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ------------------ 361
           +GS +++ ++K G L  A  VF++M  R+ VT N L+   V+                  
Sbjct: 245 VGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMI 304

Query: 362 --SGQSDVVVASS-------------------------------------IVDMYAKCER 382
             S +S V++ SS                                     +V+MYAKC  
Sbjct: 305 DVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGS 364

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP----------- 431
           I +A++VF  +  +D V WN+++      G   EA   +  M+   I P           
Sbjct: 365 IADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSS 424

Query: 432 ------------------------NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
                                   N+   N+++  +   G +NE + +F  M     + +
Sbjct: 425 CASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP----EHD 480

Query: 468 LITWTTLISGLTQNSCG-NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
            ++W ++I  L ++     EA++ F      G K +  T +  LSA + ++    G+ IH
Sbjct: 481 QVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIH 540

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLA 585
           G  +++++        +L+  Y KCG +   +++F  ++  ++   +N+MISGY  + L 
Sbjct: 541 GLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELL 600

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH--- 642
            +AL L   + Q G   DS  +  +L+A +    +  G+E+         V+  +E    
Sbjct: 601 AKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHAC-----SVRACLESDVV 655

Query: 643 -FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
               +V++ S+CG LD ALR   TMP   +++   S++S   +  + E A  + E  ++L
Sbjct: 656 VGSALVDMYSKCGRLDYALRFFNTMPV-RNSYSWNSMISGYARHGQGEEALKLFE-TMKL 713

Query: 702 EPDNPGNYVALSNAYAA 718
           +   P ++V      +A
Sbjct: 714 DGQTPPDHVTFVGVLSA 730



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 133/504 (26%), Positives = 243/504 (48%), Gaps = 47/504 (9%)

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
           N V  + +++C  +G  G  R  H  + K   D  V++ ++LI+ Y + GD   ARKVFD
Sbjct: 3   NCVPLSFVQSC--VGHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFD 60

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD- 300
            M  RN V+W  ++ GY +NG ++EA+    +M  EG+   + +  S+L A   + ++  
Sbjct: 61  EMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGI 120

Query: 301 -EGKQAHAVAVINGMELDNVLGSSIINFYSK-VGLLEDAEVVFSRMVERDIVTWNLLIAS 358
             G+Q H +       +D V+ + +I+ Y K +G +  A   F  +  ++ V+WN +I+ 
Sbjct: 121 LFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISV 180

Query: 359 YVQSG--QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
           Y Q+G  +S   + SS+     + +     +  F S++     L             +  
Sbjct: 181 YSQAGDQRSAFRIFSSM-----QYDGSRPTEYTFGSLVTTACSL-------------TEP 222

Query: 417 ASRLFYQ----MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
             RL  Q    +Q  G+  ++   + ++  F ++G ++ A+ +F QM++     N +T  
Sbjct: 223 DVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMET----RNAVTLN 278

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA-----SLRNGRAIHG 527
            L+ GL +   G EA   F +M  + I  S  +    LS+  + +      L+ GR +HG
Sbjct: 279 GLMVGLVRQKWGEEATKLFMDM-NSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHG 337

Query: 528 YLIRHDLC-LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
           ++I   L      I   LV+MYAKCG+I  A+RVF     K+   +N+MI+G   +G  +
Sbjct: 338 HVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFI 397

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF---VGMFSDHQVKPSMEHF 643
           EA+  +K++++  I P S T  + L++C+       G ++    + +  D  V  S    
Sbjct: 398 EAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVS---- 453

Query: 644 GCVVNLLSRCGNLDEALRVILTMP 667
             ++ L +  G L+E  ++  +MP
Sbjct: 454 NALMTLYAETGYLNECRKIFSSMP 477



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 204/438 (46%), Gaps = 31/438 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+ L +     EAV+    M+  +   G       L  C   +    GQQIH   
Sbjct: 382 SWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGES 441

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS-E 164
           LK G     N  V   L+  YA+   L+   ++F  +   +  SW +IIG   R   S  
Sbjct: 442 LKLG--IDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLP 499

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
           +A++ F+  Q  G   +     +VL A  +L +   G+ +HG  LK          ++LI
Sbjct: 500 EAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALI 559

Query: 225 DMYGKCGDLEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
             YGKCG+++   K+F  M   R+ V WNSMI GY+ N L  +A+ + + M   G     
Sbjct: 560 ACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDS 619

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
               ++LSA A++  L+ G + HA +V   +E D V+GS++++ YSK G L+ A   F+ 
Sbjct: 620 FMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNT 679

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-----DV 398
           M  R+  +WN +I+ Y + GQ                   + A ++F ++ L      D 
Sbjct: 680 MPVRNSYSWNSMISGYARHGQG------------------EEALKLFETMKLDGQTPPDH 721

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFL 457
           V +  +L+A +  G   E  + F  M    G++P I  ++ +     R G++++ +D   
Sbjct: 722 VTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIE 781

Query: 458 QMQSLGVQPNLITWTTLI 475
           +M    ++PN++ W T++
Sbjct: 782 KMP---MKPNVLIWRTVL 796


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 208/665 (31%), Positives = 327/665 (49%), Gaps = 85/665 (12%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+A+H  +L+ G    V++ +SL+++Y KCG + +A+ VF+ +  ++VV+WN +I GY Q
Sbjct: 29  GKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQ 88

Query: 261 NGL--NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            G       + +F  M  E   P   + + + +A+++      G QAHA+A+      D 
Sbjct: 89  KGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDV 148

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV-----------------Q 361
            +GSS+IN Y K+G + DA  VF  + ER+ V+W  +I+ Y                  +
Sbjct: 149 FVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRRE 208

Query: 362 SGQSDVVVASSI-----------------------------------VDMYAKCERIDNA 386
            G  D  + +S+                                   V MY KC  +D+A
Sbjct: 209 EGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDA 268

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----L 441
            + F     +D + W+ ++  YA  G S EA  LFY M L G  P+  ++  VI     +
Sbjct: 269 LKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDI 328

Query: 442 GFLRNGQ-----------------MNEAKDMFLQMQSL-----GV----QPNLITWTTLI 475
           G L  G+                 M    DM+ +  SL     G     +P+++ WT++I
Sbjct: 329 GALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMI 388

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           SG  QN     A+  +  M    I P   T+   L AC+ +A+L  G+ IH   I++   
Sbjct: 389 SGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFS 448

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           L  PI ++L  MYAKCG++     VF   PS+++  +NAMISG + +G  ++AL LF+ L
Sbjct: 449 LEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEEL 508

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           +     PD +TF N+L+ACSH GLV  G   F  M  +  + P +EH+ C+V++LSR G 
Sbjct: 509 RHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGK 568

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           L E    I +   D    +   LL  C      EL  Y  E L++L       Y+ LS+ 
Sbjct: 569 LHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSI 628

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           Y A GR ++V +VR +MK +G+ K PGCSWI++  ++HVFV  D+ HP+  +I + L  L
Sbjct: 629 YTALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIVKICSELRRL 688

Query: 776 GMHVR 780
             H++
Sbjct: 689 RDHMK 693



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/485 (30%), Positives = 246/485 (50%), Gaps = 29/485 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  + E+   EA +L   M+         IY  +L        ++ G+QIH   LKNG 
Sbjct: 186 ISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGL 245

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +  V   LV  Y KC  LD A + F     K+  +W+A+I    + G S +AL  F
Sbjct: 246 LSIAS--VGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLF 303

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M  +G  P  F    V+ AC  +G +  G+ +HGY LK G++  ++  ++L+DMY KC
Sbjct: 304 YNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKC 363

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L +ARK FD +   ++V W SMI GY QNG NE A+ ++  M +E + P  +++ S+L
Sbjct: 364 GSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVL 423

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A ++L AL++GKQ HA  +  G  L+  +GS++   Y+K G LED  +VF RM  RDI+
Sbjct: 424 RACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIM 483

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           TWN +I+   Q+G+                + ++  +++ +     D V +  +L+A + 
Sbjct: 484 TWNAMISGLSQNGEG--------------LKALELFEELRHGTTKPDYVTFVNVLSACSH 529

Query: 411 LGRSGEASRLFYQMQLE--GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
           +G   E  +++++M L+  GI P +  +  ++    R G+++E K+    ++S  +   +
Sbjct: 530 MGLV-ERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEF---IESATIDHGM 585

Query: 469 ITWTTLISGLTQNSCGNEAILFFQE-MLETGIKPST-----TTITCALSACTDVASLRNG 522
             W  L+ G  +N    E   +  E ++E G + S+     ++I  AL    DV  +R  
Sbjct: 586 CLWRILL-GACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRL 644

Query: 523 RAIHG 527
             + G
Sbjct: 645 MKLRG 649



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 153/570 (26%), Positives = 253/570 (44%), Gaps = 98/570 (17%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
           +LL  C  ++D+  G+ IHA++L+ G F   + Y+   LV  YAKC ++  A  +F  + 
Sbjct: 15  DLLLRCTRQKDLQKGKAIHAQLLRTGSF--SSVYLTNSLVNLYAKCGSIVKAKLVFESIT 72

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIG-------FVEMQEDGVSPDNFVLPNVLKACGALG 196
            K+V SW  +I      G S+K  +G       F  M+ +   P+      V  A  +  
Sbjct: 73  NKDVVSWNCLIN-----GYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSP 127

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
               G   H   +K      VFV SSLI+MY K G + +ARKVFD +  RN V+W ++I 
Sbjct: 128 ETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIIS 187

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           GY    +  EA  +F  M  E     +   TS+LSA    D +  GKQ H +A+ NG+  
Sbjct: 188 GYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLS 247

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS----------- 365
              +G++++  Y K G L+DA   F    ++D +TW+ +I  Y Q+G S           
Sbjct: 248 IASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMH 307

Query: 366 -----------------------------------------DVVVASSIVDMYAKCERID 384
                                                     +   +++VDMYAKC  + 
Sbjct: 308 LNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLV 367

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI---- 440
           +A++ F+ +   D+VLW ++++ YA  G +  A  L+ +MQ+E I P+ ++  SV+    
Sbjct: 368 DARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACS 427

Query: 441 -LGFLRNGQMNEAK-----------------DMFLQMQSLG---------VQPNLITWTT 473
            L  L  G+   A+                  M+ +  SL             +++TW  
Sbjct: 428 SLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNA 487

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +ISGL+QN  G +A+  F+E+     KP   T    LSAC+ +  +  G+     ++   
Sbjct: 488 MISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEF 547

Query: 534 LCLP-TPIVTSLVDMYAKCGNIHQAKRVFD 562
             +P       +VD+ ++ G +H+ K   +
Sbjct: 548 GIVPRVEHYACMVDILSRAGKLHETKEFIE 577



 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 237/496 (47%), Gaps = 29/496 (5%)

Query: 64  VDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV 123
           ++L   M+  N       +  +        + + G Q HA  +K  +F+  + +V + L+
Sbjct: 98  MELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFY--DVFVGSSLI 155

Query: 124 VFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
             Y K   +  A ++F  +  +N  SWA II       ++ +A   F  M+ +  + D F
Sbjct: 156 NMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKF 215

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
           +  +VL A      V +G+ +H   LK G      V ++L+ MYGKCG L++A K F+  
Sbjct: 216 IYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELS 275

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
             ++ + W++MI GY Q G + EA+ +FY M L G +P+  +   +++A +++ AL+EGK
Sbjct: 276 GDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGK 335

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
           Q H  ++  G E      +++++ Y+K G L DA   F  + E DIV W  +I+ Y Q+G
Sbjct: 336 QIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNG 395

Query: 364 QSDVVVA-----------------SSIVDMYAKCERIDNAKQVFNSIILR----DVVLWN 402
           +++  +                  +S++   +    ++  KQ+    I      +V + +
Sbjct: 396 ENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGS 455

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
            L   YA  G   + + +F +M     S +I++WN++I G  +NG+  +A ++F +++  
Sbjct: 456 ALSTMYAKCGSLEDGNLVFRRMP----SRDIMTWNAMISGLSQNGEGLKALELFEELRHG 511

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRN 521
             +P+ +T+  ++S  +         ++F+ ML E GI P      C +   +    L  
Sbjct: 512 TTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHE 571

Query: 522 GRA-IHGYLIRHDLCL 536
            +  I    I H +CL
Sbjct: 572 TKEFIESATIDHGMCL 587



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 182/398 (45%), Gaps = 46/398 (11%)

Query: 346 ERDIVTWNLLIASYVQSGQ-SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
           ++D+     + A  +++G  S V + +S+V++YAKC  I  AK VF SI  +DVV WN L
Sbjct: 23  QKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCL 82

Query: 405 LAAYADLGRSGEA--SRLFYQMQLEGISPN------------------------------ 432
           +  Y+  G  G +    LF +M+ E   PN                              
Sbjct: 83  INGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKT 142

Query: 433 -----IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
                +   +S+I  + + G M +A+ +F  +     + N ++W T+ISG        EA
Sbjct: 143 SNFYDVFVGSSLINMYCKIGCMLDARKVFDTIP----ERNTVSWATIISGYAMERMAFEA 198

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
              F  M            T  LSA T    +  G+ IH   +++ L     +  +LV M
Sbjct: 199 WELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTM 258

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           Y KCG +  A + F++S  K+   ++AMI+GYA  G + EAL LF N+   G  P   TF
Sbjct: 259 YGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTF 318

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
             ++NACS  G + EG ++  G       +  +     +V++ ++CG+L +A +    + 
Sbjct: 319 VGVINACSDIGALEEGKQIH-GYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLK 377

Query: 668 CDPDAHIIGSLLSTCVKS--NETELAEYISEHLLQLEP 703
            +PD  +  S++S   ++  NET L  Y    + ++ P
Sbjct: 378 -EPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMP 414


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 209/714 (29%), Positives = 349/714 (48%), Gaps = 93/714 (13%)

Query: 149 SWAAII-GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGY 207
           +W A+I G   + G+  +    + +M+  G+ P      ++L A         GR VH  
Sbjct: 166 AWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAA 225

Query: 208 VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267
            ++ G D  VFV SSLI++Y KCG + +A  VFD    +NVV WN+M+ G V+N    EA
Sbjct: 226 AVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEA 285

Query: 268 IRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327
           I++F  M   G+E    +  S+L A A+LD+   G+Q   V + N M+    + ++ ++ 
Sbjct: 286 IQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDM 345

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----------------------- 364
           +SK G ++DA+ +F+ +  +D V+WN L+     + +                       
Sbjct: 346 HSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSF 405

Query: 365 -----------------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
                                        S+  V SS++D Y+K   +++ ++V   +  
Sbjct: 406 ATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDA 465

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG------------- 442
             +V  N L+A      R  EA  LF Q+  +G+ P+  +++S++ G             
Sbjct: 466 SSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSIIGKQV 525

Query: 443 ---FLRNGQMNE--------------------AKDMFLQMQSLGVQPNLITWTTLISGLT 479
               L++G +N+                    A  + ++M       NL+ WT ++SG  
Sbjct: 526 HCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEMPD---HKNLVEWTAIVSGYA 582

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           QN    +++L F  M    + P   T    L AC+++ +L +G+ IHG +I+        
Sbjct: 583 QNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKT 642

Query: 540 IVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
             ++++DMY+KCG+I  +   F ++   +++ ++N+MI G+A +G A EAL LF+ +Q  
Sbjct: 643 ATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKMQDS 702

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
            I  D +TF  +L AC+HAGL++EG   F  M   + + P ++H+ C ++LL R G+L E
Sbjct: 703 QIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRGGHLQE 762

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           A  VI  +P  PD  I  + L+ C    + E  E  ++ L++LEP N   YV LSN YAA
Sbjct: 763 AQEVINELPFRPDGVIWATYLAACRMHKDEERGEIAAKELVELEPQNSSTYVLLSNMYAA 822

Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           +G W E    R+ M+EKG  K PGCSWI +G +  +F+  D++H     IY  L
Sbjct: 823 AGNWVEAKMAREAMREKGATKFPGCSWITVGNKTSLFLVQDKNHLGALRIYEML 876



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 174/685 (25%), Positives = 295/685 (43%), Gaps = 133/685 (19%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L  C     + +G+Q H    K G       +    LV  YA+C  +  A R+F  + + 
Sbjct: 38  LSACSRLGALVSGKQAHCDAEKRG--LGSGAFCAAALVNMYARCGRVGDARRVFGGISLP 95

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           +   WA++I    R G  ++A+  F  M++ G SPD                        
Sbjct: 96  DTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVT--------------------- 134

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA-RNVVAWNSMIVGYV-QNGL 263
                     CV V  +L  +    G LE+AR +   M A  + VAWN++I GY  Q+G+
Sbjct: 135 ----------CVAVVCALTAL----GRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGI 180

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
             E   ++ +M   G+ PTR +  S+LSA+AN  A  EG+Q HA AV +G++ +  +GSS
Sbjct: 181 EHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSS 240

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSD 366
           +IN Y+K G + DA +VF    E+++V WN ++   V++                  ++D
Sbjct: 241 LINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEAD 300

Query: 367 VVVASSIVDMYA-----------KCERIDN------------------------AKQVFN 391
                S++   A           +C  I N                        AK +FN
Sbjct: 301 EFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFN 360

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG--------- 442
            I  +D V WN LL          EA  +   M L+G++P+ +S+ +VI           
Sbjct: 361 LITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATET 420

Query: 443 --------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
                                     + ++G +   + +  Q+ +  + P       LI+
Sbjct: 421 GKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPR----NVLIA 476

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD-LC 535
           GL QN+  +EAI  FQ++L  G+KPS+ T +  LS CT + S   G+ +H Y ++   L 
Sbjct: 477 GLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLN 536

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
             T +  SLV  Y K      A ++  ++   K L  + A++SGYA +G + ++L  F  
Sbjct: 537 DDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWR 596

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           ++   + PD +TF +IL ACS    +++G E+  G+               ++++ S+CG
Sbjct: 597 MRSYDVHPDEVTFASILKACSEMTALSDGKEIH-GLIIKSGFGSYKTATSAIIDMYSKCG 655

Query: 655 NLDEALRVILTMPCDPDAHIIGSLL 679
           ++  +      +    D  +  S++
Sbjct: 656 DIISSFEAFKELKSKQDITLWNSMI 680



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 232/493 (47%), Gaps = 58/493 (11%)

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           GV PD F L   L AC  LG +  G+  H    K G     F A++L++MY +CG + +A
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDA 85

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           R+VF G+   + V W SMI GY + G  +EA+ +F  M   G  P RV+  +++ A   L
Sbjct: 86  RRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL 145

Query: 297 DALDEGKQ-AHAV----------AVINGMELDNVLGSSIINFYSKVGL--LEDAEVVFSR 343
             L++ +   H +          AVI+G    + +   +   Y  +    L      F+ 
Sbjct: 146 GRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFAS 205

Query: 344 MVE-----RDIVTWNLLIASYVQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
           M+         +    + A+ V+ G  ++V V SS++++YAKC  I +A  VF+    ++
Sbjct: 206 MLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKN 265

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LG----- 442
           VV+WN +L          EA ++F  M+  G+  +  ++ SV+          LG     
Sbjct: 266 VVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQC 325

Query: 443 -----------FLRN---------GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
                      F+ N         G +++AK +F    +L    + ++W  L+ GLT N 
Sbjct: 326 VTIKNCMDASLFVANATLDMHSKFGAIDDAKTLF----NLITYKDTVSWNALLVGLTHNE 381

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
              EAI   + M   G+ P   +    ++AC+++ +   G+ IH   ++H +C    + +
Sbjct: 382 EDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGS 441

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
           SL+D Y+K G++   ++V     +  +   N +I+G   +    EA+ LF+ + + G+ P
Sbjct: 442 SLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKP 501

Query: 603 DSITFTNILNACS 615
            S TF++IL+ C+
Sbjct: 502 SSFTFSSILSGCT 514



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 164/340 (48%), Gaps = 53/340 (15%)

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           GV P +  + + LSA + L AL  GKQAH  A   G+                       
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGL----------------------- 62

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
                                      S    A+++V+MYA+C R+ +A++VF  I L D
Sbjct: 63  --------------------------GSGAFCAAALVNMYARCGRVGDARRVFGGISLPD 96

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFL 457
            V W ++++ Y   GR  EA  LF +M+  G SP+ ++  +V+      G++ +A+ +  
Sbjct: 97  TVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALGRLEDARTLLH 156

Query: 458 QMQSLGVQPNLITWTTLISGLTQNS-CGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
           +M +     + + W  +ISG  Q S   +E    +++M   G+ P+ +T    LSA  + 
Sbjct: 157 RMPA---PSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANA 213

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
            +   GR +H   +RH L     + +SL+++YAKCG I  A  VFD S  K + ++NAM+
Sbjct: 214 TAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAML 273

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           +G   +   VEA+ +F  +++ G++ D  T+ ++L AC+H
Sbjct: 274 NGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAH 313



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%)

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           G++P    +   LSAC+ + +L +G+  H    +  L        +LV+MYA+CG +  A
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDA 85

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           +RVF      +   + +MISGY   G   EA+ LF  +++ G  PD +T   ++ A +  
Sbjct: 86  RRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL 145

Query: 618 GLVNEGLELF 627
           G + +   L 
Sbjct: 146 GRLEDARTLL 155


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 224/749 (29%), Positives = 374/749 (49%), Gaps = 93/749 (12%)

Query: 63   AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRD-MYTGQQIHARILKNGDFFARNEYVETK 121
            A+DL   +     QI   ++  +L+ C   R+ +  G+++H RI+K+G     +  +ET 
Sbjct: 642  AIDLYHRLVSEKTQISKFVFPSVLRACAGSREHLSVGRKVHGRIIKSG--VDDDAVIETS 699

Query: 122  LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL---NCRVGLSEKALIGFVEMQEDGV 178
            L+  Y +   L  A ++F  + V+++ +W+ ++     NC V    KAL  F  M +DGV
Sbjct: 700  LLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENCEV---LKALRMFKCMVDDGV 756

Query: 179  SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
             PD   + +V++ C  LG +   R+VHG + +  FD    + +SL+ MY KCGDL  + K
Sbjct: 757  EPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEK 816

Query: 239  VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
            +F+ +  +N V+W +MI  Y +   +E+A+R F EM   G+EP  V++ SILS+      
Sbjct: 817  IFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGL 876

Query: 299  LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
            + EGK  H  A+    ELD        N+ S                             
Sbjct: 877  IREGKSVHGFAIRR--ELDP-------NYES----------------------------- 898

Query: 359  YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                      ++ ++V++YA+C R+ + + + + +  R++VLWN+ ++ YA  G   EA 
Sbjct: 899  ----------LSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEAL 948

Query: 419  RLFYQMQLEGISPNIISWNSVI-----LGFLRNGQM-------NEAKDMFLQMQSLGV-- 464
             LF QM    I P+  +  S+I      G +R G+         +  D F+Q   + +  
Sbjct: 949  CLFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDVSDEFVQNSVIDMYS 1008

Query: 465  ----------------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
                              +++TW +++ G +QN    EAI  F  M  + ++ +  T   
Sbjct: 1009 KSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLA 1068

Query: 509  ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT--SLVDMYAKCGNIHQAKRVFDISPS 566
             + AC+ + SL  GR +H  LI   +C    + T  +L+DMYAKCG+++ A+ VF    +
Sbjct: 1069 VIQACSSIGSLEKGRWVHHKLI---VCGIKDLFTDTALIDMYAKCGDLNTAETVFRAMSN 1125

Query: 567  KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            + +  +++MI+ Y MHG    A++ F  + + G  P+ + F N+L+AC H+G V EG + 
Sbjct: 1126 RSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEG-KY 1184

Query: 627  FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
            +  +     V P+ EHF C ++LLSR G+L EA R I  MP   DA + GSL++ C    
Sbjct: 1185 YFNLMKLFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQ 1244

Query: 687  ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
            + ++ + I   +  +  D+ G Y  LSN YA  G W E  ++R  MK   L+K PG S I
Sbjct: 1245 KMDIIKAIKNDISDIVTDDTGYYTLLSNIYAEEGEWEEFRRMRSAMKSLNLKKVPGYSAI 1304

Query: 747  QIGEELHVFVACDRSHPKTEEIYATLALL 775
            +I +++  F A + +  +TEEIY  L  L
Sbjct: 1305 EIDKKVFRFGAGEETCFQTEEIYMFLGNL 1333


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  349 bits (895), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 215/736 (29%), Positives = 360/736 (48%), Gaps = 85/736 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+ C+  + +  G+ IH +++  G     + ++   L+  Y  C   D A  +F  +  
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLG--LQNDIFLCKTLINQYLSCHLYDHAKCVFDNMEN 66

Query: 145 KNVFS-WAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALGWVGFGR 202
               S W  ++    +  +  +AL  F ++     + PD++  P+V KACG L     G+
Sbjct: 67  PCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGK 126

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            +H  ++K G    + V SSL+ MYGKC   E+A  +F+ M  ++V  WN++I  Y Q+G
Sbjct: 127 MIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSG 186

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             ++A+  F  M   G EP  V++T+ +S+ A L  L+ G + H   + +G  LD+    
Sbjct: 187 NFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSF--- 243

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
                                                         ++S++VDMY KC  
Sbjct: 244 ----------------------------------------------ISSALVDMYGKCGH 257

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG 442
           ++ A ++F  +  + VV WN++++ Y   G      +LF +M  EG+ P + + +S+I+ 
Sbjct: 258 LEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMV 317

Query: 443 FLRNGQMNEAK-------------DMFL------------------QMQSLGVQPNLITW 471
             R+ ++ E K             D+F+                  ++  L  +  +++W
Sbjct: 318 CSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSW 377

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
             +ISG        EA+  F EM ++ ++    T T  L+AC+ +A+L  G+ IH  +I 
Sbjct: 378 NVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIE 437

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
             L     ++ +L+DMYAKCG + +A  VF   P ++L  + +MI+ Y  HG A  AL L
Sbjct: 438 KKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALEL 497

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  + Q  + PD + F  IL+AC HAGLV+EG   F  M + + + P +EH+ C+++LL 
Sbjct: 498 FAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLG 557

Query: 652 RCGNLDEALRVILTMP-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
           R G L EA  ++   P    D  ++ +L S C      +L   I+  L+  +PD+   Y+
Sbjct: 558 RAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYI 617

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            LSN YA++ +W+EV  VR  MKE GL+KNPGCSWI+I +++  F   D SH   E ++ 
Sbjct: 618 LLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSHLHLELVFK 677

Query: 771 TLALLGMHVRLVSKVF 786
            L+ L  H+   SK F
Sbjct: 678 CLSYLSDHMEDESKSF 693



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 220/451 (48%), Gaps = 28/451 (6%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  + + C        G+ IH  ++K G     +  V + LV  Y KC+A + A  LF  
Sbjct: 109 YPSVFKACGGLHRYVLGKMIHTCLIKTG--LMMDIVVGSSLVGMYGKCNAFEKAIWLFNE 166

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  K+V  W  +I    + G  + AL  F  M+  G  P++  +   + +C  L  +  G
Sbjct: 167 MPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRG 226

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             +H  ++  GF    F++S+L+DMYGKCG LE A ++F+ M  + VVAWNSMI GY   
Sbjct: 227 MEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLK 286

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G     I++F  M  EGV+PT  +++S++   +    L EGK  H   + N ++ D  + 
Sbjct: 287 GDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVN 346

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------Q 364
           SS+++ Y K G +E AE +F  + +  +V+WN++I+ YV  G                 +
Sbjct: 347 SSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVE 406

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV----VLWNTLLAAYADLGRSGEASRL 420
           SD +  +S++   ++   ++  K++ N II + +    V+   LL  YA  G   EA  +
Sbjct: 407 SDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSV 466

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
           F  +       +++SW S+I  +  +G    A ++F +M    V+P+ + +  ++S    
Sbjct: 467 FKCLP----KRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGH 522

Query: 481 NSCGNEAILFFQEMLET-GIKPSTTTITCAL 510
               +E   +F +M+   GI P     +C +
Sbjct: 523 AGLVDEGCYYFNQMINVYGIIPRVEHYSCLI 553



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 3/191 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS    E ++ EA+ L +EM+    +     +  +L  C     +  G++IH  I++   
Sbjct: 381 ISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKK- 439

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               NE V   L+  YAKC A+D A  +F  L  +++ SW ++I      G +  AL  F
Sbjct: 440 -LDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELF 498

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFVASSLIDMYGK 229
            EM +  V PD      +L ACG  G V  G      ++ V G    V   S LID+ G+
Sbjct: 499 AEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGR 558

Query: 230 CGDLEEARKVF 240
            G L EA ++ 
Sbjct: 559 AGRLHEAYEIL 569


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  348 bits (894), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 207/689 (30%), Positives = 344/689 (49%), Gaps = 74/689 (10%)

Query: 145  KNVFSWAAIIG-LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            +N   W + +       G     L  F E+   GV  D+ V    LK C  +  +  G  
Sbjct: 636  RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 695

Query: 204  VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
            +HG ++K GFD  V++  +L++ YG+C  LE+A +VF  M     + WN  I+  +Q+  
Sbjct: 696  IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 755

Query: 264  NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
             ++ + +F +M    ++    ++  +L A   + AL+  KQ H      G++ D  L + 
Sbjct: 756  LQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNP 815

Query: 324  IINFYSKVGLLEDAEVVFSRMVER-----------------------------------D 348
            +I+ YSK G LE A  VF  M  R                                   D
Sbjct: 816  LISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPD 875

Query: 349  IVTWNLLIASYVQSGQSDVVV-----------------ASSIVDMYAKCERIDNAKQVFN 391
            IVTWN L++ +   G  + V+                  +S++   ++   ++  K+  +
Sbjct: 876  IVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKET-H 934

Query: 392  SIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
              +LR     DV +  +L+  Y        A  +F  M+    + NI +WNS++ G+   
Sbjct: 935  GYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMK----NRNIFAWNSLVSGYSFK 990

Query: 447  GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
            G   +A  +  QM+  G++P+L+TW  +ISG     C  +A +           P++ +I
Sbjct: 991  GMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFM-----------PNSASI 1039

Query: 507  TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
            TC L AC  ++ L+ G+ IH   IR+       + T+L+DMY+K  ++  A +VF    +
Sbjct: 1040 TCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQN 1099

Query: 567  KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            K L  +N MI G+A+ GL  EA+++F  +Q+ G+ PD+ITFT +L+AC ++GL+ EG + 
Sbjct: 1100 KTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKY 1159

Query: 627  FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
            F  M +D+++ P +EH+ C+V+LL R G LDEA  +I TMP  PDA I G+LL +C    
Sbjct: 1160 FDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHK 1219

Query: 687  ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
                AE  +++L +LEP+N  NY+ + N Y+   RW ++  +R++M   G+R     SWI
Sbjct: 1220 NLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWI 1279

Query: 747  QIGEELHVFVACDRSHPKTEEIYATLALL 775
            QI + +HVF + ++ HP   +IY  L  L
Sbjct: 1280 QINQRVHVFSSDEKPHPDAGKIYFELYQL 1308



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 157/593 (26%), Positives = 254/593 (42%), Gaps = 81/593 (13%)

Query: 64   VDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV 123
            +++  E+  +      E+Y   L+ C    D++ G +IH  ++K G  F  + Y+   L+
Sbjct: 659  LEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRG--FDLDVYLRCALM 716

Query: 124  VFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
             FY +C  L+ A+++F  +       W   I LN +    +K +  F +MQ   +  +  
Sbjct: 717  NFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETA 776

Query: 184  VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
             +  VL+ACG +G +   + +HGYV + G D  V + + LI MY K G LE AR+VFD M
Sbjct: 777  TIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 836

Query: 244  IARNVVAWNSMIVGYVQNGLNEEAIRVFYE------------------------------ 273
              RN  +WNSMI  Y   G   +A  +FYE                              
Sbjct: 837  ENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVL 896

Query: 274  -----MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328
                 M  EG +P   S+TS+L A + L  L+ GK+ H   + NG + D  +G+S+I+ Y
Sbjct: 897  NILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMY 956

Query: 329  SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388
             K   L  A+ VF  M  R+I  WN L++ Y   G            M+    R+ N  Q
Sbjct: 957  VKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKG------------MFEDALRLLN--Q 1002

Query: 389  VFNSIILRDVVLWNTLLAAYADLGRSGE----------------ASRLFYQMQLE----- 427
            +    I  D+V WN +++ YA  G + +                AS    Q   E     
Sbjct: 1003 MEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLS 1062

Query: 428  ---GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
               G   ++    ++I  + ++  +  A  +F ++Q+      L +W  +I G      G
Sbjct: 1063 IRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQN----KTLASWNCMIMGFAIFGLG 1118

Query: 485  NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT-PIVTS 543
             EAI  F EM + G+ P   T T  LSAC +   +  G      +I     +P       
Sbjct: 1119 KEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCC 1178

Query: 544  LVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMHGLAVEALALFKNL 595
            +VD+  + G + +A  +    P K +  ++ A++    +H     A    KNL
Sbjct: 1179 MVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNL 1231



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 208/421 (49%), Gaps = 26/421 (6%)

Query: 220  ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN-GLNEEAIRVFYEMTLEG 278
            A +LI  Y   GD   A  VF   + RN + WNS +  +  + G     + VF E+  +G
Sbjct: 610  AKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKG 669

Query: 279  VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
            V       +  L     +  +  G + H   +  G +LD  L  +++NFY +   LE A 
Sbjct: 670  VVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKAN 729

Query: 339  VVFSRMVERDIVTWNLLIASYVQSGQSDVVV--------------ASSIVDMYAKCER-- 382
             VF  M   + + WN  I   +QS +    V               ++IV +   C +  
Sbjct: 730  QVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMG 789

Query: 383  -IDNAKQ----VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
             ++ AKQ    VF   +  DV L N L++ Y+  G+   A R+F  M+    + N  SWN
Sbjct: 790  ALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSME----NRNTSSWN 845

Query: 438  SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
            S+I  +   G +N+A  +F +++S  ++P+++TW  L+SG   +    E +   Q M   
Sbjct: 846  SMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE 905

Query: 498  GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
            G KP+++++T  L A +++  L  G+  HGY++R+       + TSL+DMY K  ++  A
Sbjct: 906  GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSA 965

Query: 558  KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
            + VFD   ++ +  +N+++SGY+  G+  +AL L   ++++GI PD +T+  +++  +  
Sbjct: 966  QAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMW 1025

Query: 618  G 618
            G
Sbjct: 1026 G 1026



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/503 (25%), Positives = 229/503 (45%), Gaps = 85/503 (16%)

Query: 51   ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
            I +L  EK +++ V+L  +M+    +        +LQ C     +   +QIH  + + G 
Sbjct: 748  ILNLQSEK-LQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFG- 805

Query: 111  FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA------------------ 152
                +  +   L+  Y+K   L++A R+F  +  +N  SW +                  
Sbjct: 806  -LDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLF 864

Query: 153  -----------IIGLNCRV------GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
                       I+  NC +      G  E+ L     MQ +G  P++  + +VL+A   L
Sbjct: 865  YELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISEL 924

Query: 196  GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
            G++  G+  HGYVL+ GFD  V+V +SLIDMY K   L  A+ VFD M  RN+ AWNS++
Sbjct: 925  GFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLV 984

Query: 256  VGYVQNGLNEEAIRVFYEMTLEGVEPTRV------------------------SVTSILS 291
             GY   G+ E+A+R+  +M  EG++P  V                        S+T +L 
Sbjct: 985  SGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLR 1044

Query: 292  ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
            A A+L  L +GK+ H +++ NG   D  + +++I+ YSK   L++A  VF R+  + + +
Sbjct: 1045 ACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLAS 1104

Query: 352  WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
            WN +I  +   G     +    + ++ + +++          +  D + +  LL+A  + 
Sbjct: 1105 WNCMIMGFAIFG-----LGKEAISVFNEMQKVG---------VGPDAITFTALLSACKNS 1150

Query: 412  GRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
            G  GE  + F  M  +  I P +  +  ++    R G ++EA D+   + ++ ++P+   
Sbjct: 1151 GLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDL---IHTMPLKPDATI 1207

Query: 471  WTTLISGLTQNSCGNEAILFFQE 493
            W  L+      SC     L F E
Sbjct: 1208 WGALLG-----SCRIHKNLXFAE 1225



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 4/207 (1%)

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILF--FQEMLETGIKPSTTTITCALSACTDVASL 519
           +G+  N + W + +    ++S G+  I+   F+E+   G+   +   + AL  CT V  +
Sbjct: 632 VGLPRNYLKWNSFVEEF-KSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDI 690

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
             G  IHG LI+    L   +  +L++ Y +C  + +A +VF   P+ E  ++N  I   
Sbjct: 691 WLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILN 750

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
                  + + LF+ +Q   +  ++ T   +L AC   G +N   ++   +F    +   
Sbjct: 751 LQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFR-FGLDSD 809

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTM 666
           +     ++++ S+ G L+ A RV  +M
Sbjct: 810 VSLCNPLISMYSKNGKLELARRVFDSM 836


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  348 bits (894), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 202/586 (34%), Positives = 313/586 (53%), Gaps = 30/586 (5%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +H  VLK      +FVA  LI  +  C  L  A  VF+ +   NV  +NS+I  +  N  
Sbjct: 40  IHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNSS 99

Query: 264 NEE-AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
           +       F++M   G+ P   +   +L A +   +L   +  HA     G   D  + +
Sbjct: 100 HRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPN 159

Query: 323 SIINFYSKVG--LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           S+I+ YS+ G   L+ A  +F  M ERD+VTWN +I   V                  +C
Sbjct: 160 SLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLV------------------RC 201

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             +  A ++F+ +  RD+V WNT+L  YA  G    A  LF +M       NI+SW++++
Sbjct: 202 GELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWR----NIVSWSTMV 257

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
            G+ + G M+ A+ +F +        N++ WTT+I+G  +     EA   + +M E G++
Sbjct: 258 CGYSKGGDMDMARMLFDRCPV----KNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMR 313

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P    +   L+AC +   L  G+ IH  + R        ++ + +DMYAKCG +  A  V
Sbjct: 314 PDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDV 373

Query: 561 FD-ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           F  +   K++  +N+MI G+AMHG   +AL LF  + Q+G +PD+ TF  +L AC+HAGL
Sbjct: 374 FSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGL 433

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           VNEG + F  M   + + P +EH+GC+++LL R G+L EA  ++ +MP +P+A I+G+LL
Sbjct: 434 VNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLL 493

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           + C   N+ +LA  + E L +LEP +PGNY  LSN YA +G W  V+ VR  MK  G  K
Sbjct: 494 NACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEK 553

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
             G S I++ EE+H F   D+SHPK+++IY  +  L   +R V  V
Sbjct: 554 PSGASSIEVEEEVHEFTVFDQSHPKSDDIYQMIDRLVQDLRQVGYV 599



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 143/554 (25%), Positives = 245/554 (44%), Gaps = 135/554 (24%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           QIHA++LK      ++ +V  KL+  ++ C  L  A  +F  +   NV  + +II  +  
Sbjct: 39  QIHAQVLKAN--LHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAH 96

Query: 160 VGLSEKALI--GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
              S ++L    F +MQ++G+ PDNF  P +LKAC     +   R +H +V K+GF G +
Sbjct: 97  -NSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDI 155

Query: 218 FVASSLIDMYGKCGD--LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
           FV +SLID Y +CG+  L+ A  +F  M  R+VV WNSMI G V+ G  + A ++F EM 
Sbjct: 156 FVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEM- 214

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
                P R                                 D V  +++++ Y+K G ++
Sbjct: 215 -----PDR---------------------------------DMVSWNTMLDGYAKAGEMD 236

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
            A  +F RM  R+IV+W+ ++  Y + G  D+                  A+ +F+   +
Sbjct: 237 TAFELFERMPWRNIVSWSTMVCGYSKGGDMDM------------------ARMLFDRCPV 278

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN----------------------- 432
           ++VVLW T++A YA+ G + EA+ L+ +M+  G+ P+                       
Sbjct: 279 KNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRI 338

Query: 433 ---IISW---------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
              +  W         N+ I  + + G ++ A D+F  M +   + ++++W ++I G   
Sbjct: 339 HASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMA---KKDVVSWNSMIQGFAM 395

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
           +  G +A+  F  M++ G +P T T    L ACT    +  GR                 
Sbjct: 396 HGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKY--------------- 440

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
                         +  ++V+ I P  E   Y  M+      G   EA  L +++    +
Sbjct: 441 -------------FYSMEKVYGIVPQVEH--YGCMMDLLGRGGHLKEAFMLLRSMP---M 482

Query: 601 DPDSITFTNILNAC 614
           +P++I    +LNAC
Sbjct: 483 EPNAIILGTLLNAC 496


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  348 bits (894), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 206/693 (29%), Positives = 347/693 (50%), Gaps = 102/693 (14%)

Query: 178 VSPDNFVLPNV--------LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           +S  N++  NV        L+ C +L  +   R +   + K G        + L+ ++ +
Sbjct: 25  LSQRNYIPANVYEHPAALLLERCSSLKEL---RHILPLIFKNGLYQEHLFQTKLVSLFCR 81

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
            G ++EA +VF+ +  +  V + +M+ G+ +    ++A++ F  M  + VEP   + T +
Sbjct: 82  YGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYL 141

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           L    +   L  GK+ H + V +G  LD    + + N Y+K   + +A  VF RM ERD+
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDL 201

Query: 350 VTWNLLIASYVQSG---------------------------------------------- 363
           V+WN ++A Y Q+G                                              
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGY 261

Query: 364 ------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                  S V +A+++VDMYAKC  +  A+ +F+ ++ R+VV WN+++ AY       EA
Sbjct: 262 AMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEA 321

Query: 418 SRLFYQMQLEGISP-----------------------------------NIISWNSVILG 442
             +F +M  EG+ P                                   N+   NS+I  
Sbjct: 322 MVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISM 381

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
           + +  +++ A  MF ++QS      +++W  +I G  QN    EA+ +F +M    +KP 
Sbjct: 382 YCKCKEVDTAASMFGKLQS----RTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPD 437

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
           T T    ++A  +++   + + IHG ++R+ L     + T+LVDMYAKCG I  A+ +FD
Sbjct: 438 TFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFD 497

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
           +   + +  +NAMI GY  HG+   AL LF+ +Q+  I P+ +TF ++++ACSH+GLV  
Sbjct: 498 MMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEA 557

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           GL+ F  M  ++ ++PSM+H+G +V+LL R G L+EA   I+ MP  P  ++ G++L  C
Sbjct: 558 GLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC 617

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
                   AE ++E L +L P++ G +V L+N Y A+  W +V QVR  M  +GLRK PG
Sbjct: 618 QIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPG 677

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           CS ++I  E+H F +   +HP +++IYA L  L
Sbjct: 678 CSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKL 710


>gi|302774170|ref|XP_002970502.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
 gi|300162018|gb|EFJ28632.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
          Length = 825

 Score =  348 bits (893), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 201/721 (27%), Positives = 365/721 (50%), Gaps = 95/721 (13%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L  C   + +  G+ IH  I ++G     +  +E  LV  Y  C ++D A R+F  +  +
Sbjct: 108 LTSCETSQALPAGKLIHGLIAQSG--HQCDLILENALVSMYGSCGSVDDAKRVFDAMPAR 165

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           NV +W A+IG +    L E+A   F  M+ +G   +      +++AC    ++  G  +H
Sbjct: 166 NVITWTAMIGAHAETSL-EQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILH 224

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
              ++        + ++LI MYG+CG LE+AR +F  M+ R+++AWN++I  Y Q+G  E
Sbjct: 225 MRSVESSSAMETPLCNALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVE 284

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           EA+ ++  M  EG +P +V+  ++L+ S   +AL + K  H+  V +G+ ++  LG++++
Sbjct: 285 EAVLLYQLMLQEGCKPDKVTFVALLTMSNGPEALTDVKLVHSHIVESGVSINIALGTALV 344

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------------- 363
             YSK   LED   +F +M +R++++WN+++ +Y + G                      
Sbjct: 345 AMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNV 404

Query: 364 ------------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
                                         ++D+++ +S+++MY +C  ++ A+ VF+ I
Sbjct: 405 TCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGI 464

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW----------------- 436
           + R+V+ W  +L AY+   R   A  LF+ + L G+ P  I++                 
Sbjct: 465 LQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALGKGR 524

Query: 437 ------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
                             ++++  + R G + +AK  F   +   V+ N +TW+ +I+  
Sbjct: 525 LVHSCAVQSGNDTDVSLGSALVAMYGRCGSIRDAKACFDDTE---VRKNHVTWSAMIAAF 581

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
            Q+    E +   + M + G+  S  T    LSAC+++A LR G+ IH Y+         
Sbjct: 582 VQHGQDREGLQHLRFMQQQGLDMSPATFASTLSACSNLADLREGKRIHSYVRERRFDTEA 641

Query: 539 PIVT-SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             VT SLV MY KCG++  A+ VF+ S  +++  +NA+ISGYA HG   +A+ LF  +QQ
Sbjct: 642 ATVTNSLVTMYGKCGSLDCAREVFETSRRQDIICWNAIISGYAQHGQTRDAVELFHRMQQ 701

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
           +G+ PD +TF  IL+ CSH GL++EG+  +  M  +  ++P+ +++ CV++LL R G L 
Sbjct: 702 EGVTPDPVTFVCILSVCSHGGLLDEGVYAYASMV-ELGLEPTQDNYACVIDLLGRAGKLQ 760

Query: 658 EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
           EA   I ++   P    + SLLS+C    + +     +E +++++P +   +V LS+ Y+
Sbjct: 761 EAEEFIQSLGTRPAIETLTSLLSSCKSHGDVQRGRRAAEGIMEMDPRSSSAHVVLSSIYS 820

Query: 718 A 718
           A
Sbjct: 821 A 821



 Score =  291 bits (746), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 185/675 (27%), Positives = 323/675 (47%), Gaps = 101/675 (14%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILK---NGDFFARNEYVETKLVVFYAKCDALDVASRL 138
           Y  LLQ C   + +   +++H++I++   +   F  N  + T     Y KC +LD A   
Sbjct: 3   YVRLLQACPKLKALDIARRLHSQIVRASLDNRVFLGNHLIHT-----YGKCHSLDDAWET 57

Query: 139 FCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
           F R+  KNV++W AIIG+         A+I   +M  +GV PDN  L   L +C     +
Sbjct: 58  FERMSYKNVYTWTAIIGVCAHHHCHSLAIILLRQMLLEGVKPDNITLLAALTSCETSQAL 117

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
             G+ +HG + + G    + + ++L+ MYG CG +++A++VFD M ARNV+ W +MI  +
Sbjct: 118 PAGKLIHGLIAQSGHQCDLILENALVSMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAH 177

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            +  L E+A +VF  M LEG +   V+  +++ A +  + L+ G   H  +V +   ++ 
Sbjct: 178 AETSL-EQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMET 236

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------ 366
            L +++I  Y + G LEDA  +FS MVERDI+ WN LI  Y Q G  +            
Sbjct: 237 PLCNALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQE 296

Query: 367 ----------------------------------------VVVASSIVDMYAKCERIDNA 386
                                                   + + +++V MY+KCE +++ 
Sbjct: 297 GCKPDKVTFVALLTMSNGPEALTDVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDT 356

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP--------------- 431
           + +F  +  R+V+ WN ++ AYA  G   +A ++   MQL+G+ P               
Sbjct: 357 RWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGS 416

Query: 432 --------------------NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
                               ++I WNS++  + R G++ +A+ +F  +    +Q N+I+W
Sbjct: 417 ADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGI----LQRNVISW 472

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           T +++  ++ +  + A+L F  +  +G+KP+  T   AL AC    +L  GR +H   ++
Sbjct: 473 TAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALGKGRLVHSCAVQ 532

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISGYAMHGLAVEALA 590
                   + ++LV MY +CG+I  AK  FD +  ++  V ++AMI+ +  HG   E L 
Sbjct: 533 SGNDTDVSLGSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQ 592

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
             + +QQ+G+D    TF + L+ACS+   + EG  +   +        +      +V + 
Sbjct: 593 HLRFMQQQGLDMSPATFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMY 652

Query: 651 SRCGNLDEALRVILT 665
            +CG+LD A  V  T
Sbjct: 653 GKCGSLDCAREVFET 667



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 179/399 (44%), Gaps = 50/399 (12%)

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           V    +L A   L ALD  ++ H+  V   ++    LG+ +I+ Y K   L+DA   F R
Sbjct: 1   VEYVRLLQACPKLKALDIARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFER 60

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN- 402
           M  +++ TW  +I                 V  +  C  +  A  +   ++L  V   N 
Sbjct: 61  MSYKNVYTWTAIIG----------------VCAHHHCHSL--AIILLRQMLLEGVKPDNI 102

Query: 403 TLLAAYA--DLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           TLLAA    +  ++  A +L + +  + G   ++I  N+++  +   G +++AK +F  M
Sbjct: 103 TLLAALTSCETSQALPAGKLIHGLIAQSGHQCDLILENALVSMYGSCGSVDDAKRVFDAM 162

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
            +     N+ITWT +I    + S   +A   F+ M   G K +  T    + AC+    L
Sbjct: 163 PA----RNVITWTAMIGAHAETSL-EQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFL 217

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
             G  +H   +     + TP+  +L+ MY +CG +  A+ +F     +++  +NA+I+ Y
Sbjct: 218 EVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEY 277

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS-----------HAGLVNEGLELFV 628
             HG   EA+ L++ + Q+G  PD +TF  +L   +           H+ +V  G+ + +
Sbjct: 278 GQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLTMSNGPEALTDVKLVHSHIVESGVSINI 337

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
            + +             +V + S+C +L++   +   MP
Sbjct: 338 ALGT------------ALVAMYSKCESLEDTRWLFEKMP 364


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  348 bits (893), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 195/575 (33%), Positives = 324/575 (56%), Gaps = 37/575 (6%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           +I  Y +  +L +AR++F+ M  R+V +WN+M+ GY QNG  ++A  VF  M     E  
Sbjct: 132 MIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMP----EKN 187

Query: 283 RVSVTSILSASANLDALDEG----KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
            VS  ++LSA      ++E     K     A+++    + +LG     F  K  ++E A 
Sbjct: 188 DVSWNALLSAYVQNSKMEEACMLFKSRENWALVS---WNCLLGG----FVKKKKIVE-AR 239

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDN 385
             F  M  RD+V+WN +I  Y QSG+              DV   +++V  Y +   ++ 
Sbjct: 240 QFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEE 299

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A+++F+ +  R+ V WN +LA Y    R   A  LF  M       N+ +WN++I G+ +
Sbjct: 300 ARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCR----NVSTWNTMITGYAQ 355

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
            G+++EAK++F +M     + + ++W  +I+G +Q+    EA+  F +M   G + + ++
Sbjct: 356 CGKISEAKNLFDKMP----KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSS 411

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
            + ALS C DV +L  G+ +HG L++        +  +L+ MY KCG+I +A  +F    
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 471

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            K++  +N MI+GY+ HG    AL  F++++++G+ PD  T   +L+ACSH GLV++G +
Sbjct: 472 GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
            F  M  D+ V P+ +H+ C+V+LL R G L++A  ++  MP +PDA I G+LL      
Sbjct: 532 YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVH 591

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
             TELAE  ++ +  +EP+N G YV LSN YA+SGRW +V ++R  M++KG++K PG SW
Sbjct: 592 GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSW 651

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           I+I  + H F   D  HP+ +EI+A L  L + ++
Sbjct: 652 IEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMK 686



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 188/382 (49%), Gaps = 29/382 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEI-YGELLQGCVYKRDMYTGQQIHARILKNG 109
           +S   + + + EA +L  +M  RN     E+ +  +L G V    M   +++   +    
Sbjct: 288 VSGYIQNRMVEEARELFDKMPERN-----EVSWNAMLAGYVQGERMEMAKELFDVMP--- 339

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
               RN      ++  YA+C  +  A  LF ++  ++  SWAA+I    + G S +AL  
Sbjct: 340 ---CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRL 396

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           FV+M+ +G   +     + L  C  +  +  G+ +HG ++K G++   FV ++L+ MY K
Sbjct: 397 FVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCK 456

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG +EEA  +F  M  +++V+WN+MI GY ++G  E A+R F  M  EG++P   ++ ++
Sbjct: 457 CGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAV 516

Query: 290 LSASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VER 347
           LSA ++   +D+G+Q  + +    G+  ++   + +++   + GLLEDA  +   M  E 
Sbjct: 517 LSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEP 576

Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
           D   W  L+ +    G ++  +A +  D     E  ++   V  S +             
Sbjct: 577 DAAIWGTLLGASRVHGNTE--LAETAADKIFAMEPENSGMYVLLSNL------------- 621

Query: 408 YADLGRSGEASRLFYQMQLEGI 429
           YA  GR G+  +L  +M+ +G+
Sbjct: 622 YASSGRWGDVGKLRVRMRDKGV 643



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 117/498 (23%), Positives = 194/498 (38%), Gaps = 125/498 (25%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SY   IS   +  +   A  L  EM  R+       +  +++G V  R++   +++   I
Sbjct: 97  SYNGMISGYLRNGEFELARKLFDEMPERDLVS----WNVMIKGYVRNRNLGKARELF-EI 151

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +   D  + N      ++  YA+   +D A  +F R+  KN  SW A++    +    E+
Sbjct: 152 MPERDVCSWN-----TMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEE 206

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLK------------ACGALGWVGFGRAVHGYVLKVGF 213
           A + F   +   +   N +L   +K            +      V +   + GY      
Sbjct: 207 ACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKI 266

Query: 214 DGC-----------VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
           D             VF  ++++  Y +   +EEAR++FD M  RN V+WN+M+ GYVQ  
Sbjct: 267 DEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGE 326

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             E A  +F       V P R                        V+  N M        
Sbjct: 327 RMEMAKELF------DVMPCR-----------------------NVSTWNTM-------- 349

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS----------------- 365
             I  Y++ G + +A+ +F +M +RD V+W  +IA Y QSG S                 
Sbjct: 350 --ITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRL 407

Query: 366 -------------DVV----------------------VASSIVDMYAKCERIDNAKQVF 390
                        DVV                      V ++++ MY KC  I+ A  +F
Sbjct: 408 NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLF 467

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
             +  +D+V WNT++A Y+  G    A R F  M+ EG+ P+  +  +V+      G ++
Sbjct: 468 KEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVD 527

Query: 451 EAKDMFLQM-QSLGVQPN 467
           + +  F  M Q  GV PN
Sbjct: 528 KGRQYFYTMTQDYGVMPN 545



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 161/350 (46%), Gaps = 65/350 (18%)

Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
           DI  WN+ I+SY+++G                  R + A +VF  +     V +N +++ 
Sbjct: 63  DIKEWNVAISSYMRTG------------------RCNEALRVFKRMPRWSSVSYNGMISG 104

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
           Y   G    A +LF +M       +++SWN +I G++RN  + +A+++F  M     + +
Sbjct: 105 YLRNGEFELARKLFDEMP----ERDLVSWNVMIKGYVRNRNLGKARELFEIMP----ERD 156

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETG-----------IKPSTTTITCALSACTDV 516
           + +W T++SG  QN C ++A   F  M E             ++ S     C L    + 
Sbjct: 157 VCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSREN 216

Query: 517 ASLRNGRAIHGYLIRHDLCLPT----------PIVT--SLVDMYAKCGNIHQAKRVFDIS 564
            +L +   + G  ++    +             +V+  +++  YA+ G I +A+++FD S
Sbjct: 217 WALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDES 276

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN-EG 623
           P +++  + AM+SGY  + +  EA  LF  + ++    + +++  +L     AG V  E 
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAML-----AGYVQGER 327

Query: 624 LELFVGMFSDHQVKP--SMEHFGCVVNLLSRCGNLDEALRVILTMPC-DP 670
           +E+   +F    V P  ++  +  ++   ++CG + EA  +   MP  DP
Sbjct: 328 MEMAKELFD---VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 374


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  348 bits (893), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 204/678 (30%), Positives = 349/678 (51%), Gaps = 97/678 (14%)

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           V   + +H  ++  G    +F+++ LI+ Y   GD+  AR  FD +  ++V  WNSMI  
Sbjct: 56  VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISA 115

Query: 258 YVQNGLNEEAIRVFYE-MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           Y + G    A+  F E ++   ++    +   ++ A  NLD   +G++ H + +  G E 
Sbjct: 116 YARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLD---DGRKVHCLVLKLGFEC 172

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------- 363
           D  + +S I+FYS+ G +  A  +F  M+ RDI TWN +I+ +  +G             
Sbjct: 173 DVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMR 232

Query: 364 ---------------------------------------QSDVVVASSIVDMYAKCERID 384
                                                  + D+ V +++++MYAK   + 
Sbjct: 233 FKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELR 292

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS--------- 435
           +A+ +FN + +RD+V WN+LLAA+    +   A  ++ +M   G+ P++++         
Sbjct: 293 SAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAA 352

Query: 436 -------------------W--------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
                              W        N++I  + + G ++ A+ +F   + L V+ ++
Sbjct: 353 ELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVF---EGLPVK-DV 408

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
           I+W +LI+G +QN   NEAI  +  M   +G  P+  T    L+A + + +L+ G   HG
Sbjct: 409 ISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHG 468

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
            LI++ L     + T LVDMY KCG +  A  +F   P +    +NA+IS + +HG  ++
Sbjct: 469 QLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLK 528

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVV 647
           A+ LFK +Q +G+ PD ITF ++L+ACSH+GLV+EG   F  M   + ++PS++H+GC+V
Sbjct: 529 AVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMV 588

Query: 648 NLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707
           +L  R G+L++A   +  MP  PD  + G+LL  C      EL   +S+HLL++E +N G
Sbjct: 589 DLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVG 648

Query: 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEE 767
            YV LSN YA  G W  V +VR + +++GL+K PG S I++ +++ VF   +++HPK EE
Sbjct: 649 YYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEE 708

Query: 768 IYATLALLGMHVRLVSKV 785
           IY+ L  L   ++ +  V
Sbjct: 709 IYSELRNLTAKMKSIGYV 726



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 214/428 (50%), Gaps = 22/428 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS      ++ EA+++  EM+ ++  +       LL  CV   D+ +G  IH   +K G 
Sbjct: 212 ISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGL 271

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +V   L+  YAK   L  A  +F +++V+++ SW +++    +      AL  +
Sbjct: 272 EF--DLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVY 329

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL-KVGFDGCVFVASSLIDMYGK 229
            +M   GV PD   L ++      LG     R++HG+V  +  F   + + +++IDMY K
Sbjct: 330 NKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAK 389

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT-LEGVEPTRVSVTS 288
            G ++ ARKVF+G+  ++V++WNS+I GY QNGL  EAI V+  M    G  P + +  S
Sbjct: 390 LGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVS 449

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
           IL+A + L AL +G +AH   + N +  D  + + +++ Y K G L DA  +F  +  + 
Sbjct: 450 ILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQS 509

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
            V+WN +I+ +   G                 + +   K++ +  +  D + + +LL+A 
Sbjct: 510 SVSWNAIISCHGLHGYG--------------LKAVKLFKEMQSEGVKPDHITFVSLLSAC 555

Query: 409 ADLGRSGEASRLFYQMQ-LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
           +  G   E    F  MQ   GI P++  +  ++  F R G + +A   F  ++++ V+P+
Sbjct: 556 SHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKA---FNFVKNMPVRPD 612

Query: 468 LITWTTLI 475
           +  W  L+
Sbjct: 613 VSVWGALL 620


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  348 bits (892), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 193/637 (30%), Positives = 351/637 (55%), Gaps = 40/637 (6%)

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM--YGKCGDLEEA 236
           SP    L ++L+ C ++  +   + VH   +K G +    + + ++      + GD + A
Sbjct: 15  SPPTHPLISLLETCESMDQL---QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYA 71

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           R++FD +   N+  WN+MI GY +    +  + ++ EM   GV+P R +   +       
Sbjct: 72  RRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRD 131

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            AL+ G+Q H   + +G++ +  + ++++  Y   G L+ A  VF    + D++TWN++I
Sbjct: 132 IALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMII 191

Query: 357 ASYVQSGQSD--------------VVVASSIVDMYAKCERIDNAKQ-------VFNSIIL 395
           ++Y + G+ +              +    ++V + + C ++ + +        V N  + 
Sbjct: 192 SAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVE 251

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
            ++VL N ++  YAD G    A  +F  M     + +IISW +++ GF   G+++ A++ 
Sbjct: 252 SNLVLENAMIDMYADCGEMDSALGIFRSMN----NRDIISWTTIVSGFTNLGEIDVARNY 307

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +M     + + ++WT +I G  +++   EA+  F+ M  T +KP   T+   L+AC  
Sbjct: 308 FDKMP----EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAH 363

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           + +L  G  I  Y+ R+ +     +  +L+DMY KCG++ +A+ +F     ++   + AM
Sbjct: 364 LGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAM 423

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I G A++G   +AL +F N+ +  I PD IT+  +L+AC+H GLV++G + F+ M S H 
Sbjct: 424 IVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHG 483

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           ++P++ H+GC+V+LL+R G L EA  VI  MP   ++ + G+LL+ C    E+++AE + 
Sbjct: 484 IEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVV 543

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           + +L+LEPDN   YV L N YAA  RWN++ ++R +M +KG++K PGCS I++   +H F
Sbjct: 544 KQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEF 603

Query: 756 VACDRSHPKTEEIYATLALLGMHVRL------VSKVF 786
           VA DRSHP+T+ I A L  +   ++L      +S+VF
Sbjct: 604 VAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVF 640



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 161/577 (27%), Positives = 263/577 (45%), Gaps = 78/577 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV--ASRLFCRL 142
           LL+ C     M   QQ+H + +K G     N  ++ +++ F    +  D   A RLF  +
Sbjct: 24  LLETC---ESMDQLQQVHCQAIKKG--LNANPVLQNRVMTFCCTHEYGDFQYARRLFDEI 78

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
              N+F W  +I    R+   +  +  ++EM   GV PD +  P + K       + +GR
Sbjct: 79  PEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGR 138

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            +HG+VLK G    VFV ++L+ MY  CG L+ AR VFD     +V+ WN +I  Y + G
Sbjct: 139 QLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVG 198

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             EE+ R+F  M  + V PT V++  +LSA + L  L  GK+ H+      +E + VL +
Sbjct: 199 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLEN 258

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
           ++I+ Y+  G ++ A  +F  M  RDI++W  +++ +   G+ DV               
Sbjct: 259 AMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDV--------------- 303

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-- 440
              A+  F+ +  +D V W  ++  Y    R  EA  LF  MQ   + P+  +  SV+  
Sbjct: 304 ---ARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTA 360

Query: 441 ---LG---------------------FLRN---------GQMNEAKDMFLQMQSLGVQPN 467
              LG                     F+RN         G +++A+ +F +M     Q +
Sbjct: 361 CAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS----QRD 416

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
             TWT +I GL  N  G +A+  F  ML+  I P   T    LSACT    +  GR    
Sbjct: 417 KFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRK--- 473

Query: 528 YLIR----HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP-VYNAMISGYAMH 582
           Y +R    H +         LVD+ A+ G + +A  V +  P K    V+ A+++G  ++
Sbjct: 474 YFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVY 533

Query: 583 GLAVEALALFKNLQQKGIDPDS----ITFTNILNACS 615
             +  A  + K + +  ++PD+    +   NI  AC 
Sbjct: 534 RESDMAEMVVKQILE--LEPDNGAVYVLLCNIYAACK 568



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/502 (25%), Positives = 229/502 (45%), Gaps = 74/502 (14%)

Query: 76  QIGPEIYGELLQGCVYKRDMYT----------------GQQIHARILKNGDFFARNEYVE 119
           Q+G  +Y E+L+  V K D YT                G+Q+H  +LK+G     N +V 
Sbjct: 100 QLGVSLYLEMLRRGV-KPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHG--LQYNVFVH 156

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           T LV  Y  C  LD A  +F      +V +W  II    +VG  E++   F+ M++  V 
Sbjct: 157 TALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVL 216

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE---- 235
           P    L  VL AC  L  +  G+ VH YV     +  + + +++IDMY  CG+++     
Sbjct: 217 PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGI 276

Query: 236 ---------------------------ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
                                      AR  FD M  ++ V+W +MI GY+++   +EA+
Sbjct: 277 FRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEAL 336

Query: 269 RVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328
            +F  M    V+P   ++ S+L+A A+L AL+ G+        N ++ D  + +++I+ Y
Sbjct: 337 ELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMY 396

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388
            K G ++ AE +F  M +RD  TW  +I     +G  +       +DM++          
Sbjct: 397 FKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGE-----KALDMFS---------N 442

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNG 447
           +  + IL D + +  +L+A    G   +  + F +M  + GI PNI  +  ++    R G
Sbjct: 443 MLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAG 502

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
           ++ EA ++   ++++ ++ N I W  L++G       + A +  +++LE  ++P    + 
Sbjct: 503 RLKEAYEV---IENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILE--LEPDNGAVY 557

Query: 508 CAL----SACTDVASLRNGRAI 525
             L    +AC     LR  R +
Sbjct: 558 VLLCNIYAACKRWNDLRELRQM 579



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 117/267 (43%), Gaps = 33/267 (12%)

Query: 23  LKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY 82
           + +++ +  K+ E D      Y S+   I    +  + +EA++L   M+  N +      
Sbjct: 301 IDVARNYFDKMPEKD------YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTM 354

Query: 83  GELLQGCVYKRDMYTGQQIHARILKN---GDFFARNEYVETKLVVFYAKCDALDVASRLF 139
             +L  C +   +  G+ I   I +N    D F RN      L+  Y KC  +D A  +F
Sbjct: 355 VSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRN-----ALIDMYFKCGDVDKAESIF 409

Query: 140 CRLRVKNVFSWAA-IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
             +  ++ F+W A I+GL    G  EKAL  F  M +  + PD      VL AC   G V
Sbjct: 410 REMSQRDKFTWTAMIVGLAVN-GHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLV 468

Query: 199 GFGR-------AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVA 250
             GR       + HG    +   GC      L+D+  + G L+EA +V + M I  N + 
Sbjct: 469 DKGRKYFLRMTSQHGIEPNIAHYGC------LVDLLARAGRLKEAYEVIENMPIKANSIV 522

Query: 251 WNSMIVG---YVQNGLNEEAIRVFYEM 274
           W +++ G   Y ++ + E  ++   E+
Sbjct: 523 WGALLAGCRVYRESDMAEMVVKQILEL 549


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  348 bits (892), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 214/717 (29%), Positives = 357/717 (49%), Gaps = 66/717 (9%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVFSWAAIIGLNCRVGLSEKALIGFV 171
           RN +    ++        +  A +LF  +  RVK+  SW  +I    + G   ++   F 
Sbjct: 72  RNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFS 131

Query: 172 EMQED----GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
            M  D    G + D F   +V+KACG+LG       +H  V K+GF     + +S++ MY
Sbjct: 132 LMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMY 191

Query: 228 GKCGDLE-------------------------------EARKVFDGMIARNVVAWNSMIV 256
            KCGD++                               +A ++F+ M  R+ V+WN++I 
Sbjct: 192 VKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLIS 251

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
            + Q+G   + + +F EM  +G  P  ++  S+LSA A+   L  G   HA  +     L
Sbjct: 252 IFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSL 311

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------- 363
           D V G+ +I+ Y+K G L+ A+ VF  + E D ++WN LI   V  G             
Sbjct: 312 DLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMR 371

Query: 364 QSDVVVASSIV-DMYAKCERIDNAKQ-------VFNSIILRDVVLWNTLLAAYADLGRSG 415
           +S VV+   I+  +   C   D A            S +     + N ++  YA  G + 
Sbjct: 372 RSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTD 431

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           +A  +F  M L     N ISW ++I  F R+G + +A+  F  M     + N++TW +++
Sbjct: 432 KADLVFRLMPLR----NTISWTAMITAFSRSGDIGKARGYFDMMP----ERNIVTWNSML 483

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           S   QN    E +  +  M   G++P   T T ++ AC D+A ++ G  +  +  +  L 
Sbjct: 484 STYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLS 543

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           L   +  S+V MY++CG I +AK  FD    K+L  +NAM++ +A +GL ++ +  F+++
Sbjct: 544 LNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDM 603

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
            +    P+ I++ ++L+ CSH GLV EG   F  M     + P+ EHF C+V+LL R G 
Sbjct: 604 LKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGL 663

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           L++A  +I  MP  P+A +  +LL +C   ++  LAE  ++ L++L+ +    YV LSN 
Sbjct: 664 LEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNM 723

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           Y+ SG  + V+ +R +MK KG+R + GCSWI++   +HVF   + SHP+ +E+Y  L
Sbjct: 724 YSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKL 780



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 218/457 (47%), Gaps = 51/457 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  S+     + + +  EM  + F      YG +L  C    D+  G  +HARIL+   
Sbjct: 250 ISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEH 309

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
             + +      L+  YAKC  LD+A R+F  LR  +  SW ++I      GL E ALI F
Sbjct: 310 --SLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILF 367

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M+   V  D F+LP +L  C    +   G  +HGY +K G      V +++I MY KC
Sbjct: 368 NQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKC 427

Query: 231 GDLE-------------------------------EARKVFDGMIARNVVAWNSMIVGYV 259
           GD +                               +AR  FD M  RN+V WNSM+  YV
Sbjct: 428 GDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYV 487

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           QNG +EE ++++  M   GV+P  ++ T+ + A A+L  +  G Q    A   G+ L+  
Sbjct: 488 QNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVS 547

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           + +SI+  YS+ GL+++A+  F  + ++D+++WN ++A++ Q+G    V           
Sbjct: 548 VANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKV----------- 596

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNS 438
              ID  + +  +    + + + ++L+  + +G   E    F  M ++ GISP    ++ 
Sbjct: 597 ---IDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSC 653

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           ++    R G + +AKD+   ++ +  +PN   W+ L+
Sbjct: 654 MVDLLGRAGLLEQAKDL---IEGMPFKPNATVWSALL 687



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 157/651 (24%), Positives = 281/651 (43%), Gaps = 104/651 (15%)

Query: 4   FTFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSY----FHQISSLSKEKQ 59
           FT+ T      S ++     KL      ++++S  S+ ++   Y    FH  S  +    
Sbjct: 75  FTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDS-VSWTTMISGYSQNGFHSRSFETFSLM 133

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           IR+  D       +N+   P  +  +++ C    D     Q+HA + K G  F     ++
Sbjct: 134 IRDTND-----GGKNYD--PFSFTSVMKACGSLGDSRLAIQLHALVSKLG--FGMETCIQ 184

Query: 120 TKLVVFYAKCDALDVAS---------RLFC----------------------RLRVKNVF 148
             +V  Y KC  +D+A           LFC                      R+  ++  
Sbjct: 185 NSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEV 244

Query: 149 SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208
           SW  +I +  + G   + L  FVEM   G SP+     +VL AC +   + +G  +H  +
Sbjct: 245 SWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARI 304

Query: 209 LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
           L++     +   + LIDMY KCG L+ A++VF  +   + ++WNS+I G V  GL E+A+
Sbjct: 305 LRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDAL 364

Query: 269 RVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328
            +F +M    V      + +IL   +  D    G+  H   + +GM     +G++II  Y
Sbjct: 365 ILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMY 424

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388
           +K G  + A++VF  M  R+ ++W  +I ++ +SG                   I  A+ 
Sbjct: 425 AKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGD------------------IGKARG 466

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW------------ 436
            F+ +  R++V WN++L+ Y   G S E  +L+  M+  G+ P+ I++            
Sbjct: 467 YFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAI 526

Query: 437 -----------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
                                  NS++  + R G + EAK+ F  +       +LI+W  
Sbjct: 527 VKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSID----DKDLISWNA 582

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +++   QN  G + I  F++ML+T  KP+  +    LS C+ +  +  G+     + R  
Sbjct: 583 MLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVF 642

Query: 534 LCLPT-PIVTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMH 582
              PT    + +VD+  + G + QAK + +  P K    V++A++    +H
Sbjct: 643 GISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVH 693



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 130/562 (23%), Positives = 232/562 (41%), Gaps = 126/562 (22%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN-------- 252
            R +H  ++  G D  +F+ ++L+ MY  CG   +A +VF     RN+  WN        
Sbjct: 27  ARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVS 86

Query: 253 -------------------------SMIVGYVQNGLNEEAIRVFYEMTLE----GVEPTR 283
                                    +MI GY QNG +  +   F  M  +    G     
Sbjct: 87  SSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDP 146

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            S TS++ A  +L       Q HA+    G  ++  + +S++  Y K G ++ AE VF  
Sbjct: 147 FSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFD 206

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           +    +  WN +I  Y Q              MY   +    A Q+FN +  RD V WNT
Sbjct: 207 IERPSLFCWNSMIYGYSQ--------------MYGPYK----ALQIFNRMPERDEVSWNT 248

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG--------------------- 442
           L++ ++  G   +   +F +M  +G SPN +++ SV+                       
Sbjct: 249 LISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRME 308

Query: 443 --------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
                         + + G ++ AK +F  ++    + + I+W +LI+G+     G +A+
Sbjct: 309 HSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLR----EHDHISWNSLITGVVHFGLGEDAL 364

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
           + F +M  + +      +   L  C+       G  +HGY I+  +    P+  +++ MY
Sbjct: 365 ILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMY 424

Query: 549 AKC-------------------------------GNIHQAKRVFDISPSKELPVYNAMIS 577
           AKC                               G+I +A+  FD+ P + +  +N+M+S
Sbjct: 425 AKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLS 484

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
            Y  +G + E L L+ +++  G+ PD ITFT  + AC+   +V  G+++ V   +   + 
Sbjct: 485 TYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQV-VTHATKFGLS 543

Query: 638 PSMEHFGCVVNLLSRCGNLDEA 659
            ++     +V + SRCG + EA
Sbjct: 544 LNVSVANSIVTMYSRCGLIKEA 565


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  348 bits (892), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 229/779 (29%), Positives = 387/779 (49%), Gaps = 112/779 (14%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDA-LDVASRLFCRLRVKNVFSWAAIIGL 156
           G +IH  I K+   +A +  +   L+  Y+ C A +D A R+F  +++K   SW +II +
Sbjct: 161 GMEIHGLISKSP--YASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISV 218

Query: 157 NCRVGLSEKALIGFVEMQEDGVS----PDNFVLPNVLKACGALGWVGFG--RAVHGYVLK 210
            CR G +  A   F  MQ +       P+ +   +++    +L   G      +   + K
Sbjct: 219 YCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEK 278

Query: 211 VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270
             F   ++V S+L+  + + G ++ A+ +F+ M  RN V  N ++VG  +    EEA ++
Sbjct: 279 SSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKI 338

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGK----QAHAVAVINGM-ELDNVLGSSII 325
           F EM  + VE    S   +LSA      L EGK    + HA  + N + ++  ++G++++
Sbjct: 339 FKEMK-DLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALV 397

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS--------------------------- 358
           N Y+K   +++A  +F  M  +D V+WN +I+                            
Sbjct: 398 NLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKF 457

Query: 359 -------------YVQSGQS------------DVVVASSIVDMYAKCERIDNAKQVFNSI 393
                        ++  GQ             DV V+++++ +YA+ + ++  ++VF  +
Sbjct: 458 SVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLM 517

Query: 394 ILRDVVLWNTLLAAYADLGRSG-EASRLFYQMQLEGISPNIISW---------------- 436
              D V WN+ + A A    S  +A + F +M   G  PN +++                
Sbjct: 518 PEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELG 577

Query: 437 -------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
                              N+++  + +  QM + + +F +M     + + ++W  +ISG
Sbjct: 578 RQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSE---RRDEVSWNAMISG 634

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
              N   ++A+     M++ G +    T+   LSAC  VA+L  G  +H   IR   CL 
Sbjct: 635 YIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIR--ACLE 692

Query: 538 TPIV--TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
             +V  ++LVDMYAKCG I  A R F++ P + +  +N+MISGYA HG   +AL LF  +
Sbjct: 693 AEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQM 752

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           +Q G  PD +TF  +L+ACSH GLV+EG E F  M   +++ P +EHF C+V+LL R G+
Sbjct: 753 KQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGD 812

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNE--TELAEYISEHLLQLEPDNPGNYVALS 713
           + +    I TMP +P+A I  ++L  C ++N   TEL    ++ L++LEP N  NYV LS
Sbjct: 813 VKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLS 872

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           N +AA G+W +V + R  M+   ++K  GCSW+ + + +HVFVA D++HP+ E+IY  L
Sbjct: 873 NMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKL 931



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 162/681 (23%), Positives = 304/681 (44%), Gaps = 127/681 (18%)

Query: 98  GQQIHARILKNG---DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII 154
             Q+H +I K G   D F  N      LV  + +   L  A +LF  +  KN+ SW+ ++
Sbjct: 58  AHQLHLQIYKTGLTSDVFWCN-----TLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLV 112

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG--WVGFGRAVHGYVLKVG 212
               + G+ ++A + F  +   G+ P+++ + + L+AC  LG   +  G  +HG + K  
Sbjct: 113 SGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSP 172

Query: 213 FDGCVFVASSLIDMYGKC-GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
           +   + +++ L+ MY  C   +++AR+VF+ +  +   +WNS+I  Y + G    A ++F
Sbjct: 173 YASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLF 232

Query: 272 YEMTLEGVE----PTRVSVTSILSASANLDALDEG----KQAHAVAVINGMELDNVLGSS 323
             M  E  E    P   +  S+++ + +L  +D G    +Q  A    +    D  +GS+
Sbjct: 233 SSMQREATELNCRPNEYTFCSLVTVACSL--VDCGLTLLEQMLARIEKSSFVKDLYVGSA 290

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD----------------- 366
           +++ +++ GL++ A+++F +M +R+ VT N L+    +  Q +                 
Sbjct: 291 LVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINA 350

Query: 367 ----------------------------VVVASSIVD-----------MYAKCERIDNAK 387
                                        ++ +++VD           +YAKC  IDNA+
Sbjct: 351 SSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNAR 410

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LG 442
            +F  +  +D V WN++++      R  EA   F+ M+  G+ P+  S  S +     LG
Sbjct: 411 SIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLG 470

Query: 443 FLRNGQ------------------------------MNEAKDMFLQMQSLGVQPNLITWT 472
           ++  GQ                              M E + +F  M     + + ++W 
Sbjct: 471 WIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMP----EYDQVSWN 526

Query: 473 TLISGL-TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           + I  L T  +   +AI +F EM++ G KP+  T    LSA + ++ L  GR IH  +++
Sbjct: 527 SFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILK 586

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALA 590
           H +     I  +L+  Y KC  +   + +F  +S  ++   +NAMISGY  +G+  +A+ 
Sbjct: 587 HSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMG 646

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH----FGCV 646
           L   + QKG   D  T   +L+AC+    +  G+E+         ++  +E        +
Sbjct: 647 LVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHAC-----AIRACLEAEVVVGSAL 701

Query: 647 VNLLSRCGNLDEALRVILTMP 667
           V++ ++CG +D A R    MP
Sbjct: 702 VDMYAKCGKIDYASRFFELMP 722



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 185/429 (43%), Gaps = 106/429 (24%)

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           +++  Q H      G+  D    ++++N + + G L  A+ +F  M ++++V+W+ L++ 
Sbjct: 55  VEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSG 114

Query: 359 YVQSGQSD--------VVVASSIVDMYA------KCER---------------------- 382
           Y Q+G  D        ++ A  + + YA       C+                       
Sbjct: 115 YAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYA 174

Query: 383 -------------------IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
                              ID+A++VF  I ++    WN++++ Y   G +  A +LF  
Sbjct: 175 SDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSS 234

Query: 424 MQLEGIS----PNIISWNSVIL-------------------------------------G 442
           MQ E       PN  ++ S++                                      G
Sbjct: 235 MQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSG 294

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
           F R G ++ AK +F QM       N +T   L+ GL +   G EA   F+EM +  ++ +
Sbjct: 295 FARYGLIDSAKMIFEQMD----DRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL-VEIN 349

Query: 503 TTTITCALSACTDVASL----RNGRAIHGYLIRHDLC-LPTPIVTSLVDMYAKCGNIHQA 557
            ++    LSA T+ ++L    R G+ +H YLIR+ L  +   I  +LV++YAKC  I  A
Sbjct: 350 ASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNA 409

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           + +F + PSK+   +N++ISG   +    EA+A F  +++ G+ P   +  + L++C+  
Sbjct: 410 RSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASL 469

Query: 618 GLVNEGLEL 626
           G +  G ++
Sbjct: 470 GWIMLGQQI 478



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 173/364 (47%), Gaps = 20/364 (5%)

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
           Y D     +A +L  Q+   G++ ++   N+++  F+R G +  A+ +F +M     Q N
Sbjct: 49  YRDSCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMP----QKN 104

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS--LRNGRAI 525
           L++W+ L+SG  QN   +EA + F+ ++  G+ P+   I  AL AC ++    L+ G  I
Sbjct: 105 LVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEI 164

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKC-GNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           HG + +        +   L+ MY+ C  +I  A+RVF+    K    +N++IS Y   G 
Sbjct: 165 HGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGD 224

Query: 585 AVEALALFKNLQQKGID----PDSITFTNILN-ACSHAGLVNEGLELFVGMFSDHQVKPS 639
           A+ A  LF ++Q++  +    P+  TF +++  ACS   LV+ GL L   M +  +    
Sbjct: 225 AISAFKLFSSMQREATELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEKSSF 281

Query: 640 MEHF---GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
           ++       +V+  +R G +D A ++I     D +A  +  L+    + ++ E A  I +
Sbjct: 282 VKDLYVGSALVSGFARYGLIDSA-KMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFK 340

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL-HVF 755
            +  L   N  +Y  L +A+       E  +    +    +R      WI IG  L +++
Sbjct: 341 EMKDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLY 400

Query: 756 VACD 759
             C+
Sbjct: 401 AKCN 404


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  348 bits (892), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 324/562 (57%), Gaps = 38/562 (6%)

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           D  +   + L+  Y K G+++EARKVFD M  RNVV+W +++ GYV NG  + A  +F++
Sbjct: 76  DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWK 135

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM-ELDNVLGSSIINFYSKVG 332
           M     E  +VS T +L     +  L +G+   A  +   + + DN+  +S+I+   K G
Sbjct: 136 MP----EKNKVSWTVML-----IGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEG 186

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
            +++A  +F  M ER ++TW  ++  Y Q+                   R+D+A+++F+ 
Sbjct: 187 RVDEAREIFDEMSERSVITWTTMVTGYGQNN------------------RVDDARKIFDV 228

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
           +  +  V W ++L  Y   GR  +A  LF  M ++ +    I+ N++I G  + G++ +A
Sbjct: 229 MPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPV----IACNAMISGLGQKGEIAKA 284

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           + +F  M+    + N  +W T+I    +N    EA+  F  M + G++P+  T+   LS 
Sbjct: 285 RRVFDSMK----ERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSV 340

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C  +ASL +G+ +H  L+R    +   + + L+ MY KCG + ++K +FD  PSK++ ++
Sbjct: 341 CASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMW 400

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           N++ISGYA HGL  EAL +F  +   G   P+ +TF   L+ACS+AG+V EGL+++  M 
Sbjct: 401 NSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESME 460

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
           S   VKP   H+ C+V++L R G  +EA+ +I +M  +PDA + GSLL  C   ++ ++A
Sbjct: 461 SVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVA 520

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           E+ ++ L+++EP+N G Y+ LSN YA+ GRW +V+++R +MK + +RK+PGCSW ++  +
Sbjct: 521 EFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENK 580

Query: 752 LHVFVACD-RSHPKTEEIYATL 772
           +H F      SHP+ E I   L
Sbjct: 581 VHAFTRGGINSHPEQESILKIL 602



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 132/236 (55%), Gaps = 3/236 (1%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A R+F  ++ +N  SW  +I ++ R G   +AL  F+ MQ+ GV P    L ++L  C +
Sbjct: 284 ARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCAS 343

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           L  +  G+ VH  +++  FD  V+VAS L+ MY KCG+L +++ +FD   +++++ WNS+
Sbjct: 344 LASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSI 403

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEG-KQAHAVAVIN 312
           I GY  +GL EEA++VF EM L G  +P  V+  + LSA +    ++EG K   ++  + 
Sbjct: 404 ISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVF 463

Query: 313 GMELDNVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
           G++      + +++   + G   +A E++ S  VE D   W  L+ +     Q DV
Sbjct: 464 GVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDV 519



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 145/594 (24%), Positives = 239/594 (40%), Gaps = 131/594 (22%)

Query: 14  FSHTKPQKPLKLSQTHLTKL--------------RESDNSYESLYKSYFHQISSLSKEKQ 59
           +S T P     +  THL+++               +S +S+ S+   YF  +        
Sbjct: 11  YSTTIPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMP------ 64

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFA-RNEYV 118
            R+A  L  EM  RN       +  L+ G      M  G+   AR  K  D    RN   
Sbjct: 65  -RDARKLFDEMPDRNIIS----WNGLVSGY-----MKNGEIDEAR--KVFDLMPERNVVS 112

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII------------------------ 154
            T LV  Y     +DVA  LF ++  KN  SW  ++                        
Sbjct: 113 WTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDN 172

Query: 155 --------GLNCRVGLSEKALIGFVEMQE----------DGVSPDNFV-----LPNVLKA 191
                   GL C+ G  ++A   F EM E           G   +N V     + +V+  
Sbjct: 173 IARTSMIHGL-CKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPE 231

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGC-----------VFVASSLIDMYGKCGDLEEARKVF 240
              + W      + GYV     +             V   +++I   G+ G++ +AR+VF
Sbjct: 232 KTEVSWTSM---LMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVF 288

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D M  RN  +W ++I  + +NG   EA+ +F  M  +GV PT  ++ SILS  A+L +L 
Sbjct: 289 DSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLH 348

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            GKQ HA  V    ++D  + S ++  Y K G L  ++++F R   +DI+ WN +I+ Y 
Sbjct: 349 HGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYA 408

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSG 415
             G                    + A +VF  + L      + V +   L+A +  G   
Sbjct: 409 SHGLG------------------EEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVE 450

Query: 416 EASRLFYQMQ-LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
           E  +++  M+ + G+ P    +  ++    R G+ NEA +M   + S+ V+P+   W +L
Sbjct: 451 EGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEM---IDSMTVEPDAAVWGSL 507

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS-------ACTDVASLRN 521
           +     +S  + A    ++++E  I+P  +     LS          DVA LR 
Sbjct: 508 LGACRTHSQLDVAEFCAKKLIE--IEPENSGTYILLSNMYASQGRWADVAELRK 559



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/227 (18%), Positives = 95/227 (41%), Gaps = 36/227 (15%)

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           +P P     +   ++ G IH+A+++FD   SK +  +N+M++GY  + +  +A  LF  +
Sbjct: 15  IPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM 74

Query: 596 QQKGI---------------------------DPDSITFTNILNACSHAGLVNEGLELFV 628
             + I                           + + +++T ++    H G V+    LF 
Sbjct: 75  PDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFW 134

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
            M   ++V  ++   G + +     G +D+A ++   +P D D     S++    K    
Sbjct: 135 KMPEKNKVSWTVMLIGFLQD-----GRIDDACKLYEMIP-DKDNIARTSMIHGLCKEGRV 188

Query: 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
           + A  I +   ++   +   +  +   Y  + R ++  ++ D+M EK
Sbjct: 189 DEAREIFD---EMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK 232


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  348 bits (892), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 196/573 (34%), Positives = 329/573 (57%), Gaps = 44/573 (7%)

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFY 272
           D C++  +++I  Y KCG + EARK+FD   A ++V+ W +M+ GY++    EEA R+F 
Sbjct: 75  DSCLW--TTMISGYIKCGLINEARKLFDRPDAQKSVIVWTAMVSGYIKMNRIEEAERLFN 132

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKV 331
           EM +  V    VS  +++   A       G+   A+ +   M   NV+  ++++   +  
Sbjct: 133 EMPVRNV----VSWNTMIDGYAR-----NGRTQEALDLFGRMPERNVVSWNTVMTALAHC 183

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
           G ++DAE +F+ M ERD+V+W  ++A   ++G                  R+D A++VF+
Sbjct: 184 GRIDDAERLFNEMRERDVVSWTTMVAGLSKNG------------------RVDAAREVFD 225

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
            + +R+VV WN ++A YA  GR  EA +LF +M       ++ SWN+++ GF++NG +N 
Sbjct: 226 KMPIRNVVSWNAMIAGYAQNGRFDEALKLFERMP----ERDMPSWNTMVTGFIQNGDLNR 281

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCAL 510
           A+ +F  M     Q N+ITWT +++G  Q+    EA+  F +M    G+KP+T T    L
Sbjct: 282 AEQLFHAMP----QKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVL 337

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD--ISPSKE 568
            AC+D+A L  G+ IH  + +      T +V++L++MY+KCG+ H AK++FD  +S   +
Sbjct: 338 GACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMD 397

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           L  +N MI+ YA HG   EA+ LF  +Q+ G   + +T+  +L ACSHAGL +EG + F 
Sbjct: 398 LIAWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFD 457

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
            +  +  ++   +H+ C+++L  R G LDEAL +I  +  +    + G+LL+ C      
Sbjct: 458 ELLKNRYIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNA 517

Query: 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           ++ + +++ +L++EP+N   Y+  SN YA+ G   E + VR  MK+KGL+K PGCSWI +
Sbjct: 518 DIGKLVADKVLKMEPENADTYLLASNMYASVGMREEAANVRMKMKKKGLKKQPGCSWIDV 577

Query: 749 GEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
           G  + VFV  D+SH + E +     LL +H ++
Sbjct: 578 GNTVQVFVVNDKSHSQFEML--KYLLLDLHTKM 608



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 136/536 (25%), Positives = 220/536 (41%), Gaps = 94/536 (17%)

Query: 12  PKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMK 71
           PK   T    P    Q +L     S  +  S  K   + IS L +E ++ EA  +  EM 
Sbjct: 16  PKLKITHCYYPF---QNNLRIRSSSTATLTSEMKRCNYFISKLCREGKVNEARKVFDEMS 72

Query: 72  CRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131
            R+      ++  ++ G +       G    AR L +     ++  V T +V  Y K + 
Sbjct: 73  KRD----SCLWTTMISGYIK-----CGLINEARKLFDRPDAQKSVIVWTAMVSGYIKMNR 123

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           ++ A RLF  + V+NV SW  +I    R G +++AL  F  M E  V   N V+   L  
Sbjct: 124 IEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNTVM-TALAH 182

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           CG +            +     +  V   ++++    K G ++ AR+VFD M  RNVV+W
Sbjct: 183 CGRID-------DAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSW 235

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N+MI GY QNG  +EA+++F  M    +      VT  +           G    A  + 
Sbjct: 236 NAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQ---------NGDLNRAEQLF 286

Query: 312 NGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERD--------IVTWNLLIASYVQS 362
           + M   NV+  ++++  Y + GL E+A  +F++M   D         VT  +L A    +
Sbjct: 287 HAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVT--VLGACSDLA 344

Query: 363 G----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIIL--RDVVLWNTL 404
           G                Q    V S++++MY+KC     AK++F+  +    D++ WN +
Sbjct: 345 GLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGM 404

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           +AAYA  G   EA  LF +M                                   Q LG 
Sbjct: 405 IAAYAHHGYGNEAINLFNKM-----------------------------------QELGF 429

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASL 519
           Q N +T+  L++  +     +E   +F E+L+   I+      TC +  C     L
Sbjct: 430 QANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQVREDHYTCLIDLCGRAGRL 485



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 105/474 (22%), Positives = 196/474 (41%), Gaps = 45/474 (9%)

Query: 62  EAVDLLTEMKCRN-FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           EA+ L  +M+  +  +     +  +L  C     +  GQQIH  I K    F  + YV +
Sbjct: 312 EALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKT--VFQESTYVVS 369

Query: 121 KLVVFYAKCDALDVASRLFCRLRVK--NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
            L+  Y+KC    VA ++F        ++ +W  +I      G   +A+  F +MQE G 
Sbjct: 370 ALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQELGF 429

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA----SSLIDMYGKCGDLE 234
             ++     +L AC   G    G      +LK  +   + V     + LID+ G+ G L+
Sbjct: 430 QANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRY---IQVREDHYTCLIDLCGRAGRLD 486

Query: 235 EARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS-- 291
           EA  + +G+    ++  W +++ G   +G N +  ++  +  L+ +EP       + S  
Sbjct: 487 EALNIIEGLGKEVSLSLWGALLAGCSVHG-NADIGKLVADKVLK-MEPENADTYLLASNM 544

Query: 292 --------ASANLDALDEGKQAHAVAVINGMELDNVLGSSIIN------FYSKVGLLEDA 337
                    +AN+    + K        + +++ N +   ++N      F     LL D 
Sbjct: 545 YASVGMREEAANVRMKMKKKGLKKQPGCSWIDVGNTVQVFVVNDKSHSQFEMLKYLLLDL 604

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR- 396
                +   RD+   +LL+   +   ++ VV  +   D   K E          SI+ R 
Sbjct: 605 HTKMKK--NRDMSDDDLLVDVEIYLWKARVV--AKWPDYKQKIEGASTQHNPVLSIVFRK 660

Query: 397 --------DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
                   D+V ++ ++     LG    A +++ +M   G S + + + + I  F   G+
Sbjct: 661 SIYHSLIGDLVAYSLIVYVKVSLGDLDFALKMYNEMVRRGFSESSLVY-TFIRAFCEKGR 719

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
           ++EA  +  +M+  G++    T+  +I G   +   NE    F+EML  G  PS
Sbjct: 720 VDEAIGLMTEMEGKGLRAYDETYECVIVGCADSGRLNECWSVFEEMLSVGFVPS 773


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  348 bits (892), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 193/637 (30%), Positives = 351/637 (55%), Gaps = 40/637 (6%)

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM--YGKCGDLEEA 236
           SP    L ++L+ C ++  +   + VH   +K G +    + + ++      + GD + A
Sbjct: 36  SPPTHPLISLLETCESMDQL---QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYA 92

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           R++FD +   N+  WN+MI GY +    +  + ++ EM   GV+P R +   +       
Sbjct: 93  RRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRD 152

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            AL+ G+Q H   + +G++ +  + ++++  Y   G L+ A  VF    + D++TWN++I
Sbjct: 153 IALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMII 212

Query: 357 ASYVQSGQSD--------------VVVASSIVDMYAKCERIDNAKQ-------VFNSIIL 395
           ++Y + G+ +              +    ++V + + C ++ + +        V N  + 
Sbjct: 213 SAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVE 272

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
            ++VL N ++  YAD G    A  +F  M     + +IISW +++ GF   G+++ A++ 
Sbjct: 273 SNLVLENAMIDMYADCGEMDSALGIFRSMN----NRDIISWTTIVSGFTNLGEIDVARNY 328

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +M     + + ++WT +I G  +++   EA+  F+ M  T +KP   T+   L+AC  
Sbjct: 329 FDKMP----EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAH 384

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           + +L  G  I  Y+ R+ +     +  +L+DMY KCG++ +A+ +F     ++   + AM
Sbjct: 385 LGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAM 444

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I G A++G   +AL +F N+ +  I PD IT+  +L+AC+H GLV++G + F+ M S H 
Sbjct: 445 IVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHG 504

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           ++P++ H+GC+V+LL+R G L EA  VI  MP   ++ + G+LL+ C    E+++AE + 
Sbjct: 505 IEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVV 564

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           + +L+LEPDN   YV L N YAA  RWN++ ++R +M +KG++K PGCS I++   +H F
Sbjct: 565 KQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEF 624

Query: 756 VACDRSHPKTEEIYATLALLGMHVRL------VSKVF 786
           VA DRSHP+T+ I A L  +   ++L      +S+VF
Sbjct: 625 VAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVF 661



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 168/618 (27%), Positives = 278/618 (44%), Gaps = 81/618 (13%)

Query: 44  YKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHA 103
           +++  H    + K KQ+       + +K  +    P I   LL+ C     M   QQ+H 
Sbjct: 7   FRTLLHH-RHVKKPKQMTTIAATSSALKSFSPPTHPLI--SLLETC---ESMDQLQQVHC 60

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDV--ASRLFCRLRVKNVFSWAAIIGLNCRVG 161
           + +K G     N  ++ +++ F    +  D   A RLF  +   N+F W  +I    R+ 
Sbjct: 61  QAIKKG--LNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLD 118

Query: 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVAS 221
             +  +  ++EM   GV PD +  P + K       + +GR +HG+VLK G    VFV +
Sbjct: 119 FPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHT 178

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           +L+ MY  CG L+ AR VFD     +V+ WN +I  Y + G  EE+ R+F  M  + V P
Sbjct: 179 ALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLP 238

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
           T V++  +LSA + L  L  GK+ H+      +E + VL +++I+ Y+  G ++ A  +F
Sbjct: 239 TTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIF 298

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
             M  RDI++W  +++ +   G+ DV                  A+  F+ +  +D V W
Sbjct: 299 RSMNNRDIISWTTIVSGFTNLGEIDV------------------ARNYFDKMPEKDYVSW 340

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LG-------------- 442
             ++  Y    R  EA  LF  MQ   + P+  +  SV+     LG              
Sbjct: 341 TAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDR 400

Query: 443 -------FLRN---------GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                  F+RN         G +++A+ +F +M     Q +  TWT +I GL  N  G +
Sbjct: 401 NKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS----QRDKFTWTAMIVGLAVNGHGEK 456

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR----HDLCLPTPIVT 542
           A+  F  ML+  I P   T    LSACT    +  GR    Y +R    H +        
Sbjct: 457 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRK---YFLRMTSQHGIEPNIAHYG 513

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELP-VYNAMISGYAMHGLAVEALALFKNLQQKGID 601
            LVD+ A+ G + +A  V +  P K    V+ A+++G  ++  +  A  + K + +  ++
Sbjct: 514 CLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILE--LE 571

Query: 602 PDS----ITFTNILNACS 615
           PD+    +   NI  AC 
Sbjct: 572 PDNGAVYVLLCNIYAACK 589



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 169/352 (48%), Gaps = 47/352 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARI----------LKNG--DFFARNEYVETKLVVF------- 125
           +L  C   +D+ TG+++H+ +          L+N   D +A    +++ L +F       
Sbjct: 246 VLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRD 305

Query: 126 ----------YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
                     +     +DVA   F ++  K+  SW A+I    R    ++AL  F  MQ 
Sbjct: 306 IISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQA 365

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
             V PD F + +VL AC  LG +  G  +  Y+ +      +FV ++LIDMY KCGD+++
Sbjct: 366 TNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDK 425

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A  +F  M  R+   W +MIVG   NG  E+A+ +F  M    + P  ++   +LSA  +
Sbjct: 426 AESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTH 485

Query: 296 LDALDEGKQAH-AVAVINGMELDNVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWN 353
              +D+G++    +   +G+E +      +++  ++ G L++A EV+ +  ++ + + W 
Sbjct: 486 TGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWG 545

Query: 354 LLIAS---YVQSGQSDVVVASS-------------IVDMYAKCERIDNAKQV 389
            L+A    Y +S  +++VV                + ++YA C+R ++ +++
Sbjct: 546 ALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLREL 597



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 117/267 (43%), Gaps = 33/267 (12%)

Query: 23  LKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY 82
           + +++ +  K+ E D      Y S+   I    +  + +EA++L   M+  N +      
Sbjct: 322 IDVARNYFDKMPEKD------YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTM 375

Query: 83  GELLQGCVYKRDMYTGQQIHARILKN---GDFFARNEYVETKLVVFYAKCDALDVASRLF 139
             +L  C +   +  G+ I   I +N    D F RN      L+  Y KC  +D A  +F
Sbjct: 376 VSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNA-----LIDMYFKCGDVDKAESIF 430

Query: 140 CRLRVKNVFSWAA-IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
             +  ++ F+W A I+GL    G  EKAL  F  M +  + PD      VL AC   G V
Sbjct: 431 REMSQRDKFTWTAMIVGLAVN-GHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLV 489

Query: 199 GFGR-------AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVA 250
             GR       + HG    +   GC      L+D+  + G L+EA +V + M I  N + 
Sbjct: 490 DKGRKYFLRMTSQHGIEPNIAHYGC------LVDLLARAGRLKEAYEVIENMPIKANSIV 543

Query: 251 WNSMIVG---YVQNGLNEEAIRVFYEM 274
           W +++ G   Y ++ + E  ++   E+
Sbjct: 544 WGALLAGCRVYRESDMAEMVVKQILEL 570


>gi|449469206|ref|XP_004152312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Cucumis sativus]
          Length = 873

 Score =  348 bits (892), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 224/716 (31%), Positives = 377/716 (52%), Gaps = 46/716 (6%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKC-DALDVASRLFCRLRVKNVFSWAAIIGL 156
           G+ IH+ ++K+G    R+  V   L+  YAK       A   F  +  K+V +W  II  
Sbjct: 165 GKSIHSFVMKSG--LDRDTLVGNALISMYAKSGQPWYDAYAAFNSIIHKDVVTWNTIISA 222

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG---WVGFGRAVHGYV-LKVG 212
                L   AL  F  M E+ + P+   +  +L  C + G      FG+ +HGY+  +  
Sbjct: 223 LAEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCASFGNNVSCRFGKEIHGYIHRRTE 282

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
               + V ++L+++Y + G +EEA  +F  +  R++V+WN++I GY  N    EA+  F 
Sbjct: 283 LIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRDLVSWNTLISGYSLNDKWLEAVDHFC 342

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING-MELDNVLGSSIINFYSKV 331
           ++   G +P  V++ S+L A A    L  GK  H   + +  +  D+ +G+++++FY+K 
Sbjct: 343 KLLCLGSDPDSVTLISVLPACAYSQNLRIGKMIHGYILRHPVLSEDSTVGNALVSFYTKC 402

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD--------VVVASSIVDMYAKCERI 383
             ++ A   FS +  +D+++WN ++ ++ + G +         ++      D +     I
Sbjct: 403 NDVKSAFHSFSLISSKDLISWNSVLNAFAEFGNTTQFPRLLHLMLRERFKPDHFTILSII 462

Query: 384 DNAKQVFNSIILRDV----------------VLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           +    V     +++V                 + N LL AY+  G    A ++F   +  
Sbjct: 463 NFCITVLGGCKVKEVHCYSVRACLFEADYGPTILNALLDAYSKCGIIDYALKIF---ESS 519

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
               N+++ NS+I  ++     N+A  +F  M     + +L TW  +I    +N+C  +A
Sbjct: 520 SGKRNLVTCNSMISCYVNCKSPNDALTIFSGMS----ETDLTTWNLMIRVYAENNCPRDA 575

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR---HDLCLPTPIVTSL 544
           +  F+ +   G+KP   +I   L  C ++AS R  +  HGY  R    D+ L      +L
Sbjct: 576 LGLFRRLQIKGMKPDAVSIMSLLPVCNELASFRLLKECHGYSFRSRFEDVYLDG----AL 631

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           +D YAKCG +  A ++F+ S  K+L ++ +MISGYA+HG+  EAL +F N+ + G+ PD 
Sbjct: 632 LDAYAKCGAVDCAYKLFESSSQKDLVMFTSMISGYAIHGMGEEALKVFTNMLESGVKPDH 691

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
           +  T+IL+ACSH GLV++GL +F  M     +KP+MEH+ CVV+LL+R G + +A   ++
Sbjct: 692 VVVTSILSACSHTGLVDQGLNIFHSMEEVIHIKPTMEHYACVVDLLARGGRIKDAYSFVI 751

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
            MP  PDA+I G+LL  C   +E EL   ++E L + + D+ GNYV +SN YAA  +W+ 
Sbjct: 752 GMPIQPDANIWGTLLGACKTHHEVELGLVVAEQLFETKADDIGNYVVMSNLYAADAKWDG 811

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           V +VR +MKEK L+K PGCSWI++  E + F+A D  HP+   IY  L  L   ++
Sbjct: 812 VLEVRKLMKEKELKKPPGCSWIEVEGEKNFFLAGDSLHPQRNMIYNLLNTLHQQIK 867



 Score =  207 bits (526), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 151/510 (29%), Positives = 243/510 (47%), Gaps = 96/510 (18%)

Query: 149 SWAAIIGLNCRVGLSEKALIGFVEMQE--DGVSPDNFVLPNVLKACGALGWVGFGRAVHG 206
           SW++ I   C     ++ L  FV   +   G  PDN +   + K+C AL  +  G+A+ G
Sbjct: 8   SWSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAINIGKALQG 67

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE- 265
           Y +K G   C  V   L+++Y +CG  +E  K+F+ +  R+VV WN ++ GY ++ +++ 
Sbjct: 68  YAVKQGEIACQSVYKGLLNLYARCGAFDECWKLFEQLNHRDVVTWNIILSGYCRSQIHDT 127

Query: 266 EAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           +AIR+F +M  EG V+P+ +++ SIL   + +     GK               V+G SI
Sbjct: 128 KAIRLFVKMHAEGEVKPSAITIASILPVCSRV-----GK--------------GVVGKSI 168

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
            +F  K GL            +RD +  N LI+ Y +SGQ          D YA      
Sbjct: 169 HSFVMKSGL------------DRDTLVGNALISMYAKSGQP-------WYDAYA------ 203

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS--------- 435
                FNSII +DVV WNT+++A A+     +A +LF  M  E I PN I+         
Sbjct: 204 ----AFNSIIHKDVVTWNTIISALAEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCA 259

Query: 436 ------------------------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
                                          N+++  +LR GQM EA+ +F  ++    Q
Sbjct: 260 SFGNNVSCRFGKEIHGYIHRRTELIEDISVCNALMNLYLRVGQMEEAEILFSHLK----Q 315

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            +L++W TLISG + N    EA+  F ++L  G  P + T+   L AC    +LR G+ I
Sbjct: 316 RDLVSWNTLISGYSLNDKWLEAVDHFCKLLCLGSDPDSVTLISVLPACAYSQNLRIGKMI 375

Query: 526 HGYLIRHD-LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           HGY++RH  L   + +  +LV  Y KC ++  A   F +  SK+L  +N++++ +A  G 
Sbjct: 376 HGYILRHPVLSEDSTVGNALVSFYTKCNDVKSAFHSFSLISSKDLISWNSVLNAFAEFGN 435

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNAC 614
             +   L   + ++   PD  T  +I+N C
Sbjct: 436 TTQFPRLLHLMLRERFKPDHFTILSIINFC 465


>gi|326526571|dbj|BAJ97302.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 851

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 229/739 (30%), Positives = 369/739 (49%), Gaps = 113/739 (15%)

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVFSWAAII 154
            G+Q+HA   K G     + +V   LV  Y +C  ++ A ++F  +    +N+ SW A++
Sbjct: 86  AGRQVHALAAKLG--LPGDPFVGNSLVSMYGRCGRVEDAEKVFGGIPDAARNIVSWNALM 143

Query: 155 GLNCRVGLSEKALIGFVEMQED-----GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL 209
                  LS     G +E+  D     G   D   L  VL  C ALGW   GRAVHG   
Sbjct: 144 -----AALSGDPRRG-LELFRDCLVAVGGMVDEATLVTVLPMCAALGWSETGRAVHGLAA 197

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR 269
           K G+D    V ++L+DMY KCG+L +A + F    A +VV+WN M+  Y +N     A  
Sbjct: 198 KSGWDAPARVGNALVDMYAKCGELADAERAFPE--APSVVSWNVMLGAYTRNREAGAAFG 255

Query: 270 VFYEMTLE---GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIIN 326
           +  +M ++    V    ++V S+L A +    L   ++ HA  V  G++           
Sbjct: 256 LLRDMQIKEHGSVPADEITVLSVLPACSGPTELSRLRELHAFTVRRGLD----------- 304

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNA 386
                                                 SD V  +++V  Y +C R+ +A
Sbjct: 305 ------------------------------------AASDKV-PNALVAAYGRCGRLLHA 327

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVIL---- 441
            +VF  I  + V  WNTL++A+A    +  A  LF QM    G+ P+  S  S+++    
Sbjct: 328 DRVFTDIRRKTVSSWNTLISAHAQQN-TAAAIELFIQMTNACGLKPDGFSIGSLLMACAD 386

Query: 442 -----------GF-LRNGQMNE--------------------AKDMFLQMQSLGVQPNLI 469
                      GF LRNG   +                    A+ +F  M+  G     +
Sbjct: 387 PKHLLHVKATHGFILRNGLERDTVIRASLLSAYIRCSRTEYLARVLFDAMEEKGE----V 442

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSACTDVASLRNGRAIHGY 528
            W  +ISG +QN    E++  F+EM    G   S  + T AL AC++++S+R G+ +H +
Sbjct: 443 LWIAMISGYSQNGLPGESLQLFREMQSVEGHCSSVISATSALMACSELSSVRLGKEMHCF 502

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISGYAMHGLAVE 587
            ++ DLC    + +SL+DMY+KCG +  A+  FD   +++  V + AMI+GYA++GL  E
Sbjct: 503 ALKADLCDDPFLSSSLIDMYSKCGFVEDARTFFDRLKARDAKVSWTAMITGYAVNGLGRE 562

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH-QVKPSMEHFGCV 646
           A+ L+  ++++G++PD  T+  +L AC HAG++ EGL  F  M + H +++  +EH+ CV
Sbjct: 563 AVELYGKMRREGMEPDEFTYLGLLMACGHAGMLEEGLRFFDEMRNHHHKIEVKLEHYSCV 622

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           + +LSR G   +A+ ++  MP +PDA I+ S+LS C    E EL   ++E LL+LEPD  
Sbjct: 623 IGMLSRAGRFADAVALMAEMPQEPDAKILSSVLSACHIHGEAELGSDVAERLLELEPDKA 682

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTE 766
            +YV  SN YA S RW+++ +VR ++++ G+ K PGCSWI +  +++ FVA +  HP+ E
Sbjct: 683 EHYVLASNMYAGSRRWDDMRKVRKMLRDAGIAKEPGCSWIDVAGKVYSFVAGENPHPEME 742

Query: 767 EIYATLALLGMHVRLVSKV 785
           ++      L   +R +  V
Sbjct: 743 QVRGMWRSLEERIREIGYV 761



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/494 (28%), Positives = 243/494 (49%), Gaps = 32/494 (6%)

Query: 176 DGVSPDNFVLPNVLKACGAL--GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           +G++PD F LP   ++CG L  G    GR VH    K+G  G  FV +SL+ MYG+CG +
Sbjct: 60  EGIAPDRFTLPPAARSCGFLRVGAAAAGRQVHALAAKLGLPGDPFVGNSLVSMYGRCGRV 119

Query: 234 EEARKVFDGM--IARNVVAWNSMIVGYVQNGLNEEAIRVFYE-MTLEGVEPTRVSVTSIL 290
           E+A KVF G+   ARN+V+WN+++     +G     + +F + +   G      ++ ++L
Sbjct: 120 EDAEKVFGGIPDAARNIVSWNALMAAL--SGDPRRGLELFRDCLVAVGGMVDEATLVTVL 177

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
              A L   + G+  H +A  +G +    +G+++++ Y+K G L DAE  F       +V
Sbjct: 178 PMCAALGWSETGRAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAERAFPEAPS--VV 235

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA- 409
           +WN+++ +Y ++ ++       + DM  K            S+   ++ + + L A    
Sbjct: 236 SWNVMLGAYTRNREAGAAFG-LLRDMQIK---------EHGSVPADEITVLSVLPACSGP 285

Query: 410 -DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
            +L R  E      +  L+  S  +   N+++  + R G++  A  +F  ++    +  +
Sbjct: 286 TELSRLRELHAFTVRRGLDAASDKVP--NALVAAYGRCGRLLHADRVFTDIR----RKTV 339

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
            +W TLIS   Q +      LF Q     G+KP   +I   L AC D   L + +A HG+
Sbjct: 340 SSWNTLISAHAQQNTAAAIELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKATHGF 399

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV-FDISPSKELPVYNAMISGYAMHGLAVE 587
           ++R+ L   T I  SL+  Y +C       RV FD    K   ++ AMISGY+ +GL  E
Sbjct: 400 ILRNGLERDTVIRASLLSAYIRCSRTEYLARVLFDAMEEKGEVLWIAMISGYSQNGLPGE 459

Query: 588 ALALFKNLQQ-KGIDPDSITFTNILNACSHAGLVNEGLELFV-GMFSDHQVKPSMEHFGC 645
           +L LF+ +Q  +G     I+ T+ L ACS    V  G E+    + +D    P +     
Sbjct: 460 SLQLFREMQSVEGHCSSVISATSALMACSELSSVRLGKEMHCFALKADLCDDPFLS--SS 517

Query: 646 VVNLLSRCGNLDEA 659
           ++++ S+CG +++A
Sbjct: 518 LIDMYSKCGFVEDA 531



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 200/418 (47%), Gaps = 25/418 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGP--EIYG-ELLQGCVYKRDMYTGQQIHARILK 107
           + + ++ ++   A  LL +M+ +     P  EI    +L  C    ++   +++HA  ++
Sbjct: 241 LGAYTRNREAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACSGPTELSRLRELHAFTVR 300

Query: 108 NGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
            G   A ++ V   LV  Y +C  L  A R+F  +R K V SW  +I  + +   +  A+
Sbjct: 301 RG-LDAASDKVPNALVAAYGRCGRLLHADRVFTDIRRKTVSSWNTLISAHAQQN-TAAAI 358

Query: 168 IGFVEMQED-GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
             F++M    G+ PD F + ++L AC     +   +A HG++L+ G +    + +SL+  
Sbjct: 359 ELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKATHGFILRNGLERDTVIRASLLSA 418

Query: 227 YGKCGDLEE-ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTRV 284
           Y +C   E  AR +FD M  +  V W +MI GY QNGL  E++++F EM ++EG   + +
Sbjct: 419 YIRCSRTEYLARVLFDAMEEKGEVLWIAMISGYSQNGLPGESLQLFREMQSVEGHCSSVI 478

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           S TS L A + L ++  GK+ H  A+   +  D  L SS+I+ YSK G +EDA   F R+
Sbjct: 479 SATSALMACSELSSVRLGKEMHCFALKADLCDDPFLSSSLIDMYSKCGFVEDARTFFDRL 538

Query: 345 VERDI-VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
             RD  V+W  +I  Y  +G     +    V++Y K  R       F  +          
Sbjct: 539 KARDAKVSWTAMITGYAVNG-----LGREAVELYGKMRREGMEPDEFTYL---------G 584

Query: 404 LLAAYADLGRSGEASRLFYQMQ--LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           LL A    G   E  R F +M+     I   +  ++ VI    R G+  +A  +  +M
Sbjct: 585 LLMACGHAGMLEEGLRFFDEMRNHHHKIEVKLEHYSCVIGMLSRAGRFADAVALMAEM 642


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 200/575 (34%), Positives = 303/575 (52%), Gaps = 61/575 (10%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R +HG + +        V +  I        ++ A  +F     +N   +N++I G  +N
Sbjct: 59  RQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAEN 118

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
              E +I  F  M    + P R++   +L ++A L     G+  H   +  G+E D+   
Sbjct: 119 SRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSF-- 176

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
                                                          V  S+VDMY K E
Sbjct: 177 -----------------------------------------------VRVSLVDMYVKVE 189

Query: 382 RIDNAKQVFN----SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
            + +A +VF+    S+    V++WN L+  Y  +G   +A+ LF  M       +  SWN
Sbjct: 190 ELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMP----KKDTGSWN 245

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           S+I GF++ G M  AK++F++M     + N+++WTT+++G +QN    +A+  F  MLE 
Sbjct: 246 SLINGFMKMGDMGRAKELFVKMP----EKNVVSWTTMVNGFSQNGDPEKALETFFCMLEE 301

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           G +P+  TI  ALSAC  + +L  G  IH YL  +   L   I T+LVDMYAKCGNI  A
Sbjct: 302 GARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHA 361

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           ++VF  +  K L +++ MI G+A+HG   +AL  F+ ++  G  PDS+ F  +LNACSH+
Sbjct: 362 EKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHS 421

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           G VNEGL+ F  M   + ++PSM+H+  VV++L R G LDEAL+ I  MP  PD  + G+
Sbjct: 422 GQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGA 481

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           L   C      E+AE  S+ LLQLEP +PG+YV LSNAYA+ GRW++  +VR  M++ G 
Sbjct: 482 LFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGA 541

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
            K+PG S+I++  +LH FVA D +H +  EIY+ L
Sbjct: 542 HKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKL 576



 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 196/445 (44%), Gaps = 88/445 (19%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +QIH ++ +   F   +  V T+ +   +  +++D A  +F R  +KN + + A+I    
Sbjct: 59  RQIHGQLYRCNVF--SSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLA 116

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
                E ++  FV M +  +SPD    P VLK+  AL   G GRA+H  +LK G +   F
Sbjct: 117 ENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSF 176

Query: 219 VASSLIDMY---------------------------------GKC--GDLEEARKVFDGM 243
           V  SL+DMY                                 G C  GDL +A ++FD M
Sbjct: 177 VRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSM 236

Query: 244 IARNVVAWNSMIVGYV-------------------------------QNGLNEEAIRVFY 272
             ++  +WNS+I G++                               QNG  E+A+  F+
Sbjct: 237 PKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFF 296

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
            M  EG  P   ++ S LSA A + ALD G + H     NG +L+ V+G+++++ Y+K G
Sbjct: 297 CMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCG 356

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
            +E AE VF    E+ ++ W+++I  +   G     +       Y +  +    K     
Sbjct: 357 NIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKAL------QYFEWMKFTGTKP---- 406

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG--ISPNIISWNSVILGFLRNGQMN 450
               D V++  +L A +  G+  E  + F  M+  G  I P++  +  V+    R G+++
Sbjct: 407 ----DSVVFLAVLNACSHSGQVNEGLKFFDNMR-RGYLIEPSMKHYTLVVDMLGRAGRLD 461

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLI 475
           EA      ++++ + P+ + W  L 
Sbjct: 462 EALKF---IRAMPITPDFVVWGALF 483



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 144/314 (45%), Gaps = 27/314 (8%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  + K   +  A  LF ++  KNV SW  ++    + G  EKAL  F  M E+G  P+
Sbjct: 247 LINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPN 306

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
           ++ + + L AC  +G +  G  +H Y+   GF   + + ++L+DMY KCG++E A KVF 
Sbjct: 307 DYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFH 366

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
               + ++ W+ MI G+  +G   +A++ F  M   G +P  V   ++L+A ++   ++E
Sbjct: 367 ETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNE 426

Query: 302 GKQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDA-EVVFSRMVERDIVTWNL 354
           G     +   + M    ++  S      +++   + G L++A + + +  +  D V W  
Sbjct: 427 G-----LKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGA 481

Query: 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
           L  +       +V +A        + E       VF             L  AYA +GR 
Sbjct: 482 LFCAC--RTHKNVEMAELASKKLLQLEPKHPGSYVF-------------LSNAYASVGRW 526

Query: 415 GEASRLFYQMQLEG 428
            +A R+   M+  G
Sbjct: 527 DDAERVRVSMRDHG 540



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 151/341 (44%), Gaps = 23/341 (6%)

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
           + DL  +  ++    Q+  +    N+ S + V+  F+ +     + D  + +       N
Sbjct: 45  FIDLIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKN 104

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
              +  LI GL +NS    +I FF  ML+  I P   T    L +   +++   GRA+H 
Sbjct: 105 SYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHC 164

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK----ELPVYNAMISGYAMHG 583
            +++  L   + +  SLVDMY K   +  A +VFD SP       + ++N +I GY   G
Sbjct: 165 GILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMG 224

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
             V+A  LF ++ +K    D+ ++ +++N     G +    ELFV M   + V      +
Sbjct: 225 DLVKATELFDSMPKK----DTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVS-----W 275

Query: 644 GCVVNLLSRCGNLDEALRVILTM---PCDPDAHIIGSLLSTCVKSNETE----LAEYISE 696
             +VN  S+ G+ ++AL     M      P+ + I S LS C K    +    +  Y+S 
Sbjct: 276 TTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSG 335

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           +  +L   N     AL + YA  G      +V    KEKGL
Sbjct: 336 NGFKL---NLVIGTALVDMYAKCGNIEHAEKVFHETKEKGL 373


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 319/572 (55%), Gaps = 27/572 (4%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI +    GD   AR++FD +   +    +++I     +GL+ EAI+++  +   G++P 
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 283 R-VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
             V + +  + + + DAL   K+ H  A   G+  D  +G+++I+ Y K   +E A  VF
Sbjct: 78  MPVFLAAAKACAVSGDAL-RVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 136

Query: 342 SRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERID 384
             +V RD+V+W  L + YV+ G                 + + +  SSI+   A+ + + 
Sbjct: 137 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 196

Query: 385 NAKQVFNSIILRDVVL----WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
           + K++    +   +V+     + L++ YA      EA  +F  M       +++SWN V+
Sbjct: 197 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR----DVVSWNGVL 252

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             + +N +  +   +FL+M   GV+ +  TW  +I G  +N    EA+  F++M + G K
Sbjct: 253 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFK 312

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P+  TI+  L AC+   +LR G+ IH Y+ RH         T+L+ MYAKCG+++ ++ V
Sbjct: 313 PNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNV 372

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           FD+   K++  +N MI   AMHG   EAL LF  +    + P+S+TFT +L+ CSH+ LV
Sbjct: 373 FDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLV 432

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EG+++F  M  DH V+P   H+ CVV++ SR G L+EA + I  MP +P A   G+LL+
Sbjct: 433 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 492

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C      ELA+  ++ L ++EP+NPGNYV+L N    +  W+E SQVR +MKE+G+ K 
Sbjct: 493 ACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKT 552

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           PGCSW+Q+G ++H FV  D+S+ ++++IY  L
Sbjct: 553 PGCSWLQVGNKVHTFVVGDKSNIESDKIYNFL 584



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 214/441 (48%), Gaps = 54/441 (12%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           GLS +A+  +  +QE G+ PD  V     KAC   G     + VH    + G    VFV 
Sbjct: 57  GLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVG 116

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++LI  YGKC  +E AR+VFD ++ R+VV+W S+   YV+ G   + + VF EM   GV+
Sbjct: 117 NALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVK 176

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P  ++V+SIL A A L  L  GK+ H  AV +GM ++  + S++++ Y+K   + +A +V
Sbjct: 177 PNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMV 236

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  M  RD+V+WN ++ +Y ++ + +         ++ K  R D  +         D   
Sbjct: 237 FDLMPHRDVVSWNGVLTAYFKNKEYE-----KGFSLFLKMSR-DGVRA--------DEAT 282

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG------------------ 442
           WN ++    + GRS EA  +F +MQ  G  PN I+ +S++                    
Sbjct: 283 WNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVF 342

Query: 443 -----------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
                            + + G +N ++++F  M+    + +++ W T+I     +  G 
Sbjct: 343 RHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMR----RKDVVAWNTMIIANAMHGNGK 398

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP-IVTSL 544
           EA+  F +ML + ++P++ T T  LS C+    +  G  I   + R  L  P     + +
Sbjct: 399 EALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCV 458

Query: 545 VDMYAKCGNIHQAKRVFDISP 565
           VD+Y++ G +++A +     P
Sbjct: 459 VDIYSRAGRLNEAYKFIQGMP 479



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 198/447 (44%), Gaps = 62/447 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+L+      EA+ + + ++ R  +    ++    + C    D    +++H    + G 
Sbjct: 50  ISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCG- 108

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               + +V   L+  Y KC  ++ A R+F  L V++V SW ++     + G   K +  F
Sbjct: 109 -VMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVF 167

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EM   GV P+   + ++L AC  L  +  G+ +HG+ ++ G    +FV S+L+ +Y KC
Sbjct: 168 REMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKC 227

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGY-------------------------------- 258
             + EAR VFD M  R+VV+WN ++  Y                                
Sbjct: 228 LSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVI 287

Query: 259 ---VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
              ++NG +EEA+ +F +M   G +P  ++++SIL A +  + L  GK+ H     +   
Sbjct: 288 GGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKV 347

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------ 363
            D    ++++  Y+K G L  +  VF  M  +D+V WN +I +    G            
Sbjct: 348 GDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKM 407

Query: 364 -----QSDVVVASSIVDMYAKCERIDNAKQVFNS-----IILRDVVLWNTLLAAYADLGR 413
                Q + V  + ++   +    ++   Q+FNS     ++  D   ++ ++  Y+  GR
Sbjct: 408 LLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGR 467

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVI 440
             EA +    M +E   P   +W +++
Sbjct: 468 LNEAYKFIQGMPME---PTASAWGALL 491



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 47/83 (56%)

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           +P+ +   L+ +    G+ ++A+++FD  P  +    + +IS    HGL+ EA+ ++ +L
Sbjct: 10  IPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSL 69

Query: 596 QQKGIDPDSITFTNILNACSHAG 618
           Q++GI PD   F     AC+ +G
Sbjct: 70  QERGIKPDMPVFLAAAKACAVSG 92


>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial; Flags: Precursor
 gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
 gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
 gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 204/581 (35%), Positives = 335/581 (57%), Gaps = 45/581 (7%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI    K G + EARK+FDG+  R+VV W  +I GY++ G   EA  +F  +        
Sbjct: 52  LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVD------- 104

Query: 283 RVSVTSILSASANLDALDEGKQ-AHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVV 340
             S  ++++ +A +      KQ + A  +   M   NV+  +++I+ Y++ G ++ A  +
Sbjct: 105 --SRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALEL 162

Query: 341 FSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAK 387
           F  M ER+IV+WN ++ + VQ G+              DVV  +++VD  AK  ++D A+
Sbjct: 163 FDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEAR 222

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
           ++F+ +  R+++ WN ++  YA   R  EA +LF  M       +  SWN++I GF+RN 
Sbjct: 223 RLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMP----ERDFASWNTMITGFIRNR 278

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTI 506
           +MN+A  +F +M     + N+I+WTT+I+G  +N    EA+  F +ML  G +KP+  T 
Sbjct: 279 EMNKACGLFDRMP----EKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTY 334

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS-LVDMYAKCGNIHQAKRVFD--I 563
              LSAC+D+A L  G+ IH  LI   +     IVTS L++MY+K G +  A+++FD  +
Sbjct: 335 VSILSACSDLAGLVEGQQIH-QLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGL 393

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
              ++L  +N+MI+ YA HG   EA+ ++  +++ G  P ++T+ N+L ACSHAGLV +G
Sbjct: 394 VCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKG 453

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI----IGSLL 679
           +E F  +  D  +    EH+ C+V+L  R G L +    I    CD DA +     G++L
Sbjct: 454 MEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFI---NCD-DARLSRSFYGAIL 509

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           S C   NE  +A+ + + +L+   D+ G YV +SN YAA+G+  E +++R  MKEKGL+K
Sbjct: 510 SACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKK 569

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            PGCSW+++G++ H+FV  D+SHP+ E + + L+ L   +R
Sbjct: 570 QPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILSDLRNKMR 610



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 210/474 (44%), Gaps = 63/474 (13%)

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           +R +  +NL+ + Y  S +  V     ++    K  +I  A+++F+ +  RDVV W  ++
Sbjct: 25  DRSVQLFNLVRSIYSSSSRPRVPQPEWLIGELCKVGKIAEARKLFDGLPERDVVTWTHVI 84

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
             Y  LG   EA  LF ++       N+++W +++ G+LR+ Q++ A+ +F +M     +
Sbjct: 85  TGYIKLGDMREARELFDRVDSR---KNVVTWTAMVSGYLRSKQLSIAEMLFQEMP----E 137

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            N+++W T+I G  Q+   ++A+  F EM E  I     +    + A      +     +
Sbjct: 138 RNVVSWNTMIDGYAQSGRIDKALELFDEMPERNI----VSWNSMVKALVQRGRIDEAMNL 193

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
              + R D+       T++VD  AK G + +A+R+FD  P + +  +NAMI+GYA +   
Sbjct: 194 FERMPRRDVV----SWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRI 249

Query: 586 VEALALFKNLQQKGI---------------------------DPDSITFTNILNACSHAG 618
            EA  LF+ + ++                             + + I++T ++       
Sbjct: 250 DEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENK 309

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL-----DEALRVILTMPCDPDAH 673
              E L +F  M  D  VKP++   G  V++LS C +L      + +  +++        
Sbjct: 310 ENEEALNVFSKMLRDGSVKPNV---GTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNE 366

Query: 674 IIGS-LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
           I+ S LL+   KS E   A  + ++ L  + D   ++ ++   YA  G   E  ++ + M
Sbjct: 367 IVTSALLNMYSKSGELIAARKMFDNGLVCQRD-LISWNSMIAVYAHHGHGKEAIEMYNQM 425

Query: 733 KEKGLRKNP--------GCS---WIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           ++ G + +          CS    ++ G E    +  D S P  EE Y  L  L
Sbjct: 426 RKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDL 479



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 195/433 (45%), Gaps = 55/433 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I  L K  +I EA  L   +  R+       +  ++ G +   DM   +++  R+     
Sbjct: 53  IGELCKVGKIAEARKLFDGLPERDVVT----WTHVITGYIKLGDMREARELFDRVDSR-- 106

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
              +N    T +V  Y +   L +A  LF  +  +NV SW  +I    + G  +KAL  F
Sbjct: 107 ---KNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELF 163

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EM E  +   N    +++KA    G +    A++ +      D  V   ++++D   K 
Sbjct: 164 DEMPERNIVSWN----SMVKALVQRGRID--EAMNLFERMPRRD--VVSWTAMVDGLAKN 215

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G ++EAR++FD M  RN+++WN+MI GY QN   +EA ++F  M           +T  +
Sbjct: 216 GKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFI 275

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDI 349
                       +   A  + + M   NV+  +++I  Y +    E+A  VFS+M+    
Sbjct: 276 RNR---------EMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGS 326

Query: 350 VTWNL------------------------LIASYVQSGQSDVVVASSIVDMYAKCERIDN 385
           V  N+                        LI+  V   Q + +V S++++MY+K   +  
Sbjct: 327 VKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVH--QKNEIVTSALLNMYSKSGELIA 384

Query: 386 AKQVFNS--IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           A+++F++  +  RD++ WN+++A YA  G   EA  ++ QM+  G  P+ +++ +++   
Sbjct: 385 ARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFAC 444

Query: 444 LRNGQMNEAKDMF 456
              G + +  + F
Sbjct: 445 SHAGLVEKGMEFF 457



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 7/160 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEI--YGELLQGCVYKRDMYTGQQIHA 103
           S+   I+   + K+  EA+++ ++M  R+  + P +  Y  +L  C     +  GQQIH 
Sbjct: 297 SWTTMITGYVENKENEEALNVFSKM-LRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQ 355

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV--KNVFSWAAIIGLNCRVG 161
            I K+     +NE V + L+  Y+K   L  A ++F    V  +++ SW ++I +    G
Sbjct: 356 LISKS--VHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHG 413

Query: 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
             ++A+  + +M++ G  P      N+L AC   G V  G
Sbjct: 414 HGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKG 453


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 214/686 (31%), Positives = 355/686 (51%), Gaps = 90/686 (13%)

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G+  D+     +++     G +  G+  H +++K  F  C+F+ ++L+ MY KCG+ + A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           +K+FD M  RNVV+WNS+I GY Q G   E + +F E  +  +   + + ++ LS     
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
             L  G+  HA+  ++G+    +L +S+I+ Y K G ++ A +VF    E D V+WN LI
Sbjct: 134 LDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLI 193

Query: 357 A------------------------------------------SYVQSGQS--------- 365
           A                                          S ++ G+          
Sbjct: 194 AGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLG 253

Query: 366 ---DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR-----SGEA 417
              DVVV ++++D YAK   +++A ++F  +   +VV++N ++A +  +       + EA
Sbjct: 254 LDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEA 313

Query: 418 SRLFYQMQLEGISPNIISWNSVILG-----------------FLRNGQMNE-AKDMFLQM 459
             LF++MQ  G+ P+  +++S++                   F  N Q +E   +  +++
Sbjct: 314 MYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVEL 373

Query: 460 QSL------GVQ-----PNL--ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
            SL      G++     P L  ++WT+LI G  QN      +  F E+L +G KP   TI
Sbjct: 374 YSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTI 433

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
           +  LSAC ++A++++G  IH Y I+  +   T I  S + MYAKCG+I  A   F  + +
Sbjct: 434 SIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKN 493

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            ++  ++ MIS  A HG A EA+ LF+ ++  GI P+ ITF  +L ACSH GLV EGL  
Sbjct: 494 PDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRY 553

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  M  DH + P+++H  C+V+LL R G L EA   I+    + D  +  SLLS C    
Sbjct: 554 FEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHK 613

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
            T+  + ++E +++LEP+   +YV L N Y  +G     +++R++MK++G++K PG SWI
Sbjct: 614 ATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWI 673

Query: 747 QIGEELHVFVACDRSHPKTEEIYATL 772
           ++G  +H FVA DRSHP ++ IY  L
Sbjct: 674 EVGNVVHSFVAGDRSHPNSQVIYVQL 699



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 147/313 (46%), Gaps = 5/313 (1%)

Query: 48  FHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILK 107
           F Q+ +++ E    EA+ L  EM+ R  +     +  +L+ C        G+QIHA+I K
Sbjct: 299 FLQMETMADEFA-NEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK 357

Query: 108 NGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
                  +E++   LV  Y+   +++   + F      +V SW ++I  + + G  E  L
Sbjct: 358 YN--LQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGL 415

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
             F E+   G  PD F +  +L AC  L  V  G  +H Y +K G      + +S I MY
Sbjct: 416 TLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMY 475

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            KCGD++ A   F      ++V+W+ MI    Q+G  +EA+ +F  M   G+ P  ++  
Sbjct: 476 AKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFL 535

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSS-IINFYSKVGLLEDAE-VVFSRMV 345
            +L A ++   ++EG +   +   +     NV  S+ I++   + G L +AE  +     
Sbjct: 536 GVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGF 595

Query: 346 ERDIVTWNLLIAS 358
           E D V W  L+++
Sbjct: 596 EGDPVMWRSLLSA 608


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  347 bits (890), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/581 (33%), Positives = 323/581 (55%), Gaps = 52/581 (8%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           ++ AR+VFD +   +     S I  Y +  LN EA+R F  M    V     ++  I  +
Sbjct: 46  IQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKS 105

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A+L A+D GKQ H++ +  G        +++INFY+K+  L  AE++F  ++ +D + +
Sbjct: 106 CASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAY 165

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
           N LI++Y +SG+   V+A               A+++F+ +  R +V WN +++ YA  G
Sbjct: 166 NCLISAYSRSGE---VLA---------------ARELFDKMRDRSIVSWNAMISCYAQNG 207

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNG----QMNEAK---------- 453
              +   +F +MQ E   PN I+  +V+     LG L  G    ++N+ K          
Sbjct: 208 DYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVST 267

Query: 454 ---DMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
              +M+++  ++           + +++TW+ +I+G  QN   NEA+  F+ M    IKP
Sbjct: 268 AMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKP 327

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
           +  T+   LSAC  + S+  G  I  Y+    L     + ++L+ MY+KCGNI +A+++F
Sbjct: 328 NDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIF 387

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           D  P ++   +N+MI G A++G A +A+AL+  +++  + P++ITF  ++ AC+HAG V 
Sbjct: 388 DKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVE 447

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
            GLE F  M SDH + P++EHF C+V+L  R G L +A   I  M  +P+  I G+LLS 
Sbjct: 448 LGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSA 507

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
                  ELAE   + LL+LEPDN GNYV LSN YA++GRW E  +VR +MK+K ++K  
Sbjct: 508 SRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAA 567

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIYAT---LALLGMHV 779
             SW+++ + +H F+  D SHP+++E+Y+T   LALL   V
Sbjct: 568 AYSWVEVEDRVHKFLVGDTSHPRSDEVYSTIDGLALLSTWV 608



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 216/459 (47%), Gaps = 51/459 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++ S+     EA+     M   N +I       + + C     +  G+Q+H+ +++ G 
Sbjct: 68  ITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYG- 126

Query: 111 FFARNEYVETKLVVFYAKCDALD-------------------------------VASRLF 139
            F  + + +  L+ FYAK + L                                 A  LF
Sbjct: 127 -FHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELF 185

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
            ++R +++ SW A+I    + G   K  I F  MQ++   P+   L  VL  C  LG + 
Sbjct: 186 DKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLE 245

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            G  +            + V++++++MY KCG +++ R VFD M  R+VV W++MI GY 
Sbjct: 246 MGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYA 305

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           QNG + EA+ +F  M    ++P  V++ S+LSA A L +++ G++  +     G+  +  
Sbjct: 306 QNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVY 365

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           + S+++  YSK G +  A  +F ++ +RD VTWN +I     +G ++  +A     +Y +
Sbjct: 366 VASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIA-----LYNR 420

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNS 438
            + I+         +  + + +  L+ A    G        F  M+ +  ISPNI  +  
Sbjct: 421 MKEIE---------VKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFAC 471

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
           ++  F R+G++ +A +   +M+   V+PN++ W TL+S 
Sbjct: 472 IVDLFCRSGRLIDAYEFICRME---VEPNVVIWGTLLSA 507


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 319/572 (55%), Gaps = 27/572 (4%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI +    GD   AR++FD +   +    +++I     +GL+ EAI+++  +   G++P 
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 283 R-VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
             V + +  + + + DAL   K+ H  A   G+  D  +G+++I+ Y K   +E A  VF
Sbjct: 164 MPVFLAAAKACAVSGDAL-RVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 222

Query: 342 SRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERID 384
             +V RD+V+W  L + YV+ G                 + + +  SSI+   A+ + + 
Sbjct: 223 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 282

Query: 385 NAKQVFNSIILRDVVL----WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
           + K++    +   +V+     + L++ YA      EA  +F  M       +++SWN V+
Sbjct: 283 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR----DVVSWNGVL 338

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             + +N +  +   +FL+M   GV+ +  TW  +I G  +N    EA+  F++M + G K
Sbjct: 339 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFK 398

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P+  TI+  L AC+   +LR G+ IH Y+ RH         T+L+ MYAKCG+++ ++ V
Sbjct: 399 PNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNV 458

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           FD+   K++  +N MI   AMHG   EAL LF  +    + P+S+TFT +L+ CSH+ LV
Sbjct: 459 FDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLV 518

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EG+++F  M  DH V+P   H+ CVV++ SR G L+EA + I  MP +P A   G+LL+
Sbjct: 519 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 578

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C      ELA+  ++ L ++EP+NPGNYV+L N    +  W+E SQVR +MKE+G+ K 
Sbjct: 579 ACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKT 638

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           PGCSW+Q+G ++H FV  D+S+ ++++IY  L
Sbjct: 639 PGCSWLQVGNKVHTFVVGDKSNIESDKIYNFL 670



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 214/441 (48%), Gaps = 54/441 (12%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           GLS +A+  +  +QE G+ PD  V     KAC   G     + VH    + G    VFV 
Sbjct: 143 GLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVG 202

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++LI  YGKC  +E AR+VFD ++ R+VV+W S+   YV+ G   + + VF EM   GV+
Sbjct: 203 NALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVK 262

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P  ++V+SIL A A L  L  GK+ H  AV +GM ++  + S++++ Y+K   + +A +V
Sbjct: 263 PNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMV 322

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  M  RD+V+WN ++ +Y ++ + +         ++ K  R D  +         D   
Sbjct: 323 FDLMPHRDVVSWNGVLTAYFKNKEYE-----KGFSLFLKMSR-DGVRA--------DEAT 368

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG------------------ 442
           WN ++    + GRS EA  +F +MQ  G  PN I+ +S++                    
Sbjct: 369 WNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVF 428

Query: 443 -----------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
                            + + G +N ++++F  M+    + +++ W T+I     +  G 
Sbjct: 429 RHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMR----RKDVVAWNTMIIANAMHGNGK 484

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP-IVTSL 544
           EA+  F +ML + ++P++ T T  LS C+    +  G  I   + R  L  P     + +
Sbjct: 485 EALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCV 544

Query: 545 VDMYAKCGNIHQAKRVFDISP 565
           VD+Y++ G +++A +     P
Sbjct: 545 VDIYSRAGRLNEAYKFIQGMP 565



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 198/447 (44%), Gaps = 62/447 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+L+      EA+ + + ++ R  +    ++    + C    D    +++H    + G 
Sbjct: 136 ISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCG- 194

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               + +V   L+  Y KC  ++ A R+F  L V++V SW ++     + G   K +  F
Sbjct: 195 -VMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVF 253

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EM   GV P+   + ++L AC  L  +  G+ +HG+ ++ G    +FV S+L+ +Y KC
Sbjct: 254 REMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKC 313

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGY-------------------------------- 258
             + EAR VFD M  R+VV+WN ++  Y                                
Sbjct: 314 LSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVI 373

Query: 259 ---VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
              ++NG +EEA+ +F +M   G +P  ++++SIL A +  + L  GK+ H     +   
Sbjct: 374 GGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKV 433

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------ 363
            D    ++++  Y+K G L  +  VF  M  +D+V WN +I +    G            
Sbjct: 434 GDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKM 493

Query: 364 -----QSDVVVASSIVDMYAKCERIDNAKQVFNS-----IILRDVVLWNTLLAAYADLGR 413
                Q + V  + ++   +    ++   Q+FNS     ++  D   ++ ++  Y+  GR
Sbjct: 494 LLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGR 553

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVI 440
             EA +    M +E   P   +W +++
Sbjct: 554 LNEAYKFIQGMPME---PTASAWGALL 577



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 47/83 (56%)

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           +P+ +   L+ +    G+ ++A+++FD  P  +    + +IS    HGL+ EA+ ++ +L
Sbjct: 96  IPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSL 155

Query: 596 QQKGIDPDSITFTNILNACSHAG 618
           Q++GI PD   F     AC+ +G
Sbjct: 156 QERGIKPDMPVFLAAAKACAVSG 178


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/436 (39%), Positives = 265/436 (60%), Gaps = 32/436 (7%)

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           ++++DMYAKC  +D A  VF+ + +R VV W +L+AAYA  G S EA RLF++M  EG+S
Sbjct: 37  NTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVS 96

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL---------------------- 468
           P+I +  +V+     NG +   KD+   ++   +Q N+                      
Sbjct: 97  PDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSV 156

Query: 469 ---------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
                    I+W T+I G ++NS  NEA+  F +M+   +KP  TT+ C L AC  +ASL
Sbjct: 157 FLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV-LEMKPDGTTLACILPACASLASL 215

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
             G+ +HG+++R+       +  +LVDMY KCG    A+ +FD+ P+K+L  +  MI+GY
Sbjct: 216 DRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGY 275

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
            MHG    A+  F  ++Q GI+PD ++F +IL ACSH+GL++EG   F  M  +  VKP 
Sbjct: 276 GMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPK 335

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           +EH+ C+V+LL+R G L  A + I +MP +PDA I G+LLS C   ++ +LAE ++EH+ 
Sbjct: 336 LEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVF 395

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           +LEP+N G YV L+N YA + +W EV ++R  +  +GL+KNPGCSWI++  ++H+F+A +
Sbjct: 396 ELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGN 455

Query: 760 RSHPKTEEIYATLALL 775
            SHP+ ++I   L  L
Sbjct: 456 SSHPQAKKIEVLLKRL 471



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/398 (31%), Positives = 209/398 (52%), Gaps = 29/398 (7%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +LQ C    D+  G+ +H   +K    + +  +  T L+  YAKC  LD A  +F  + V
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHW-KTTFCNT-LLDMYAKCGVLDGAILVFDLMSV 61

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           + V +W ++I    R GLS++A+  F EM  +GVSPD F +  VL AC   G +  G+ V
Sbjct: 62  RTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDV 121

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H Y+ +      +FV ++L+DMY KCG +E+A  VF  M  +++++WN+MI GY +N L 
Sbjct: 122 HNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLP 181

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
            EA+ +F +M LE ++P   ++  IL A A+L +LD GK+ H   + NG   D  + +++
Sbjct: 182 NEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANAL 240

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
           ++ Y K G+   A ++F  +  +D++TW ++IA Y   G                    +
Sbjct: 241 VDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFG------------------N 282

Query: 385 NAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSV 439
           NA   FN +    I  D V + ++L A +  G   E  R F  MQ E  + P +  +  +
Sbjct: 283 NAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACI 342

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
           +    R+G++  A   +  ++S+ ++P+   W  L+SG
Sbjct: 343 VDLLARSGKLAMA---YKFIKSMPIEPDATIWGALLSG 377



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/379 (30%), Positives = 179/379 (47%), Gaps = 55/379 (14%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           ++L+AC   G V  GRAVHG  +K          ++L+DMY KCG L+ A  VFD M  R
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
            VV W S+I  Y + GL++EAIR+F+EM  EGV P   ++T++L A A   +L+ GK  H
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH 122

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-- 364
                N M+ +  + +++++ Y+K G +EDA  VF  M  +DI++WN +I  Y ++    
Sbjct: 123 NYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPN 182

Query: 365 -------------------------------------------------SDVVVASSIVD 375
                                                            SD  VA+++VD
Sbjct: 183 EALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVD 242

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
           MY KC     A+ +F+ I  +D++ W  ++A Y   G    A   F +M+  GI P+ +S
Sbjct: 243 MYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVS 302

Query: 436 WNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           + S++     +G ++E    F  MQ    V+P L  +  ++  L ++     A  F + M
Sbjct: 303 FISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSM 362

Query: 495 LETGIKPSTTTITCALSAC 513
               I+P  T     LS C
Sbjct: 363 ---PIEPDATIWGALLSGC 378


>gi|115436506|ref|NP_001043011.1| Os01g0357800 [Oryza sativa Japonica Group]
 gi|53791613|dbj|BAD52960.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|53792343|dbj|BAD53077.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532542|dbj|BAF04925.1| Os01g0357800 [Oryza sativa Japonica Group]
          Length = 804

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 214/758 (28%), Positives = 369/758 (48%), Gaps = 101/758 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           L QGC    D+   ++IHA +  +G     +  + +K++  YA   AL  +  +F ++  
Sbjct: 54  LFQGCA---DVRFLKKIHANVFTHG--LCWDVILGSKILSCYANLGALHESRLVFQKIVN 108

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
            ++  W + +    R G  E+ +I +  ++ + +  +   +  V+K+C  L  +  G+ V
Sbjct: 109 DDISLWNSAMVDYFRAGYPEEVIILYKRLKLNQIGFNGKTITFVMKSCTELKNLYLGKGV 168

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ--NG 262
           H   LK+   G  FV SSLI +Y K     ++R VF+ +I +++VA+ SMI GY +  + 
Sbjct: 169 HADSLKLALSGNKFVGSSLIGLYSKFSKTNDSRGVFEEIINKDIVAYTSMITGYSETVDS 228

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL-DNVLG 321
           +   A  +  +M    +E  RV++ S+L  + NL AL EGK  H  ++   + + D++L 
Sbjct: 229 IAWNAFEIATDMLQNNLEVNRVTLVSLLQIAGNLGALQEGKSLHCYSIRRAIGVSDDILE 288

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------------- 365
           +SI+NFY++ G  + A  V     +  + +WN L++   ++GQS                
Sbjct: 289 TSIVNFYTRCGAYQSAATVLQNS-KGTVASWNALLSGLNRAGQSFNAIQYLPVMLHEHKV 347

Query: 366 -------------------------------------DVVVASSIVDMYAKCERIDNAKQ 388
                                                DVV+ ++++++Y KC R+  +K 
Sbjct: 348 TPDSVTFANVLSACAELCYFCFAASIHAYFIRRFIPMDVVLTTALIEVYTKCTRVMRSKY 407

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS------------- 435
           +F+ +I++DVV +N ++  Y     + EA+ L   M  EG++P+  +             
Sbjct: 408 LFDQLIIKDVVSYNAMIYGYLQNDMANEATSLLNYMMAEGVAPDFATVLSLLAAFADQRD 467

Query: 436 -----W-----------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
                W                 N ++  +   G++  A+ +F  ++    + NL++WT 
Sbjct: 468 LVRGRWIHGFAIRHGFCSDVDVENQILYMYSACGKIAAARAIFDSLE----KKNLVSWTA 523

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           ++ G   N   +E +  FQ M + G KP + ++  A+ A +D+  L   + IH ++ R  
Sbjct: 524 MMKGCLSNGHADEVVQLFQVMQKYGEKPDSVSLVTAVQAVSDLGHLNGLKQIHCFVYRSL 583

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
           L        SL+  YAKCG +  +  +F     + L  +NAMIS YAMHG  +  L +FK
Sbjct: 584 LEKDKITANSLISAYAKCGKLDLSAGLFFSLKYRNLDTWNAMISAYAMHGFHINVLEMFK 643

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            ++++ I PD +TF+ +L ACSHAGLV +G  +F  M S + V P  EH+GC+V+LL R 
Sbjct: 644 QMEEENIQPDELTFSTVLTACSHAGLVKDGWRIFNSMTSVYSVLPQEEHYGCMVDLLGRA 703

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G+L++  + I        + I  +LLS C     T LA  IS+ LL+  P NPG Y  +S
Sbjct: 704 GHLEDGYKFIKLSTLKDKSTIFCALLSACRTHGNTRLAHAISKELLEHGPQNPGIYALIS 763

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
             YA  G+WNEV+  +      GL+K+PG S I+  E+
Sbjct: 764 EVYAQEGQWNEVANTKARADLSGLKKHPGSSLIESMEQ 801



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 19/159 (11%)

Query: 473 TLISGLTQNSCGNEAILFFQEMLE------TGIKPSTTTITCA----------LSACTDV 516
           T++S L +N  GN +  F +  L       +G  P+T +++               C DV
Sbjct: 2   TMLSILVRNFAGNTSSKFNKVALLKLSRWLSGSTPNTNSLSSKKHNFDKSALLFQGCADV 61

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
             L+    IH  +  H LC    + + ++  YA  G +H+++ VF    + ++ ++N+ +
Sbjct: 62  RFLKK---IHANVFTHGLCWDVILGSKILSCYANLGALHESRLVFQKIVNDDISLWNSAM 118

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
             Y   G   E + L+K L+   I  +  T T ++ +C+
Sbjct: 119 VDYFRAGYPEEVIILYKRLKLNQIGFNGKTITFVMKSCT 157


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 221/684 (32%), Positives = 337/684 (49%), Gaps = 95/684 (13%)

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED-GVSPDNFVLPN 187
           C+A D    +F ++  ++  SW  +I        S +ALI F  M  D G+  D FV+  
Sbjct: 101 CEARD----MFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVSV 156

Query: 188 VLKACGALGW-VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
            LKAC ALG  V FG  +HG+ +K G    VFV+S+L+DMY K G  E+   VF+ M  R
Sbjct: 157 ALKAC-ALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTR 215

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           NVV+W ++IVG V  G + + +  F EM    V     +    L ASA    L  GK  H
Sbjct: 216 NVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIH 275

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
           A  +                   K G  E A VV                          
Sbjct: 276 AQTI-------------------KQGFNETAYVV-------------------------- 290

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
               +++  MY+KC + D   ++F  +   DVV W  L+  Y  +G    A   F +M+ 
Sbjct: 291 ----NTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRK 346

Query: 427 EGISPN---------------IISW--------------------NSVILGFLRNGQMNE 451
             +SPN               I  W                    NS+I  + + G + E
Sbjct: 347 SDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQE 406

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A  +F  M     + ++I+W+T+IS   Q S   EA  +   M   G KP+   +   LS
Sbjct: 407 ASLVFDGM----TRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLS 462

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
            C  +A L  G+ +H Y +   L   T + ++L+ MY++ GN+ +A ++FD   + ++  
Sbjct: 463 VCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVS 522

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           + AMI+GYA HG + EA++LF+N+   G+ PD +TF  IL AC+HAGLV+ G   +  M 
Sbjct: 523 WTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGLVDLGFYYYKLMT 582

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
           +++Q+ PS EH+GC+++LL R G L EA  ++  MP   D  +  +LL  C    + + A
Sbjct: 583 NEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRA 642

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
            + +E +L+L P++ G ++ L+N Y+ASGR  E + VR +MK KG+ K PG SWI   ++
Sbjct: 643 IWAAEQMLRLHPNSAGAHITLANIYSASGRREEAAHVRKLMKSKGVIKEPGWSWINSNDQ 702

Query: 752 LHVFVACDRSHPKTEEIYATLALL 775
           L+ FVA  +SHP +++I   L LL
Sbjct: 703 LNTFVAGVQSHPLSKQITTILELL 726



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 213/419 (50%), Gaps = 26/419 (6%)

Query: 95  MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII 154
           ++ G+ IHA+ +K G  F    YV   L   Y+KC   D   RLF ++   +V SW  +I
Sbjct: 268 LHYGKAIHAQTIKQG--FNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLI 325

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD 214
               ++G  E+AL  F  M++  VSP+ +   +V+ AC  L    +G  +HG+ L++G  
Sbjct: 326 MTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLV 385

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
             + V++S+I +Y KCG L+EA  VFDGM  +++++W+++I  Y Q    +EA      M
Sbjct: 386 DALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWM 445

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
           + EG +P   ++ S+LS   ++  L+ GKQ HA A+  G++ + ++ S++I+ YS+ G L
Sbjct: 446 SREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNL 505

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
           ++A  +F  +   DIV+W  +I  Y + G S               E I   + + +  +
Sbjct: 506 QEASKIFDSIKNNDIVSWTAMINGYAEHGYSQ--------------EAISLFENISSVGL 551

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG----ISPNIISWNSVILGFLRNGQMN 450
           + D V +  +L A      +G     FY  +L      I+P+   +  +I    R G+++
Sbjct: 552 MPDYVTFIGILTA---CNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLS 608

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           EA+ M   ++++    + + W+TL+     +   + AI   ++ML      +   IT A
Sbjct: 609 EAEHM---VRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLA 664



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 212/447 (47%), Gaps = 28/447 (6%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L+ C    ++Y G+ +H   +K+G     + +V + LV  Y K    +    +F  +  +
Sbjct: 158 LKACALGMNVYFGELLHGFSVKSG--LINSVFVSSALVDMYMKVGKTEQGCSVFENMTTR 215

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           NV SW A+I      G S   L  F EM    V  D+      LKA    G + +G+A+H
Sbjct: 216 NVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIH 275

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
              +K GF+   +V ++L  MY KC   +   ++F  M   +VV+W ++I+ YVQ G  E
Sbjct: 276 AQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEE 335

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
            A+  F  M    V P   +  S++SA ANL     G+Q H  A+  G+     + +SII
Sbjct: 336 RALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSII 395

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS-----------------DVV 368
             YSK GLL++A +VF  M  +DI++W+ +I+ Y Q   +                 +  
Sbjct: 396 TLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEF 455

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIIL----RDVVLWNTLLAAYADLGRSGEASRLFYQM 424
             +S++ +      ++  KQV    +      + ++ + L++ Y+  G   EAS++F  +
Sbjct: 456 ALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSI 515

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
           +    + +I+SW ++I G+  +G   EA  +F  + S+G+ P+ +T+  +++        
Sbjct: 516 K----NNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGLV 571

Query: 485 NEAILFFQEML-ETGIKPSTTTITCAL 510
           +    +++ M  E  I PS     C +
Sbjct: 572 DLGFYYYKLMTNEYQIAPSKEHYGCII 598



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 129/516 (25%), Positives = 224/516 (43%), Gaps = 87/516 (16%)

Query: 180 PDNFVLPNVLKACGALGWVGF--GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           P N+V P     C  + W G    RA   Y +    +      +S +    K G + EAR
Sbjct: 50  PLNYVYPGTATECRDMIWQGKPEQRAPTAYYVPNMPE-----LNSQLKQLMKLGKICEAR 104

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANL 296
            +F+ M  R+ ++W ++I GYV    + EA+ +F  M ++ G++  +  V+  L A A  
Sbjct: 105 DMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVSVALKACALG 164

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
             +  G+  H  +V +G+     + S++++ Y KVG  E    VF  M  R++V+W  +I
Sbjct: 165 MNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVI 224

Query: 357 ASYVQSG-------------QSDV------------VVASSIVDMYAKCERIDNAKQVFN 391
              V +G             +S V              A S +  Y K       KQ FN
Sbjct: 225 VGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFN 284

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
                   + NTL   Y+   +     RLF +M     +P+++SW ++I+ +++ G    
Sbjct: 285 ET----AYVVNTLGTMYSKCRKPDYVMRLFGKMS----TPDVVSWTNLIMTYVQMGDEER 336

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A D F +M+   V PN  T+ ++I                                   S
Sbjct: 337 ALDAFKRMRKSDVSPNEYTFASVI-----------------------------------S 361

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           AC ++A  + G  IHG+ +R  L     +  S++ +Y+KCG + +A  VFD    K++  
Sbjct: 362 ACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIIS 421

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE-----L 626
           ++ +IS Y     A EA      + ++G  P+     ++L+ C    L+  G +     L
Sbjct: 422 WSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYAL 481

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
            +G+  DH+   +M H   ++++ SR GNL EA ++
Sbjct: 482 CIGL--DHE---TMVH-SALISMYSRSGNLQEASKI 511


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 193/575 (33%), Positives = 307/575 (53%), Gaps = 55/575 (9%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L  A  VF+ +   N + WN M  G+  +     A++++  M   G+ P   +   +L +
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A      EG+Q H   +  G +LD  + +S+I+ Y++ G LEDA+ VF R   RD+V++
Sbjct: 85  CAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSY 144

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
             LI  Y   G                   I++A+++F+ I ++DVV WN +++ YA+ G
Sbjct: 145 TALITGYASRGY------------------IESAQKMFDEIPIKDVVSWNAMISGYAETG 186

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL---- 468
              +A  LF +M    + P+  +  +V+    ++G +   + +   +   G   NL    
Sbjct: 187 NYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVN 246

Query: 469 ---------------------------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
                                      I+W TLI G T  +   EA+L FQEML +G  P
Sbjct: 247 ALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 306

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRH----DLCLPTPIVTSLVDMYAKCGNIHQA 557
           +  T+   L AC  + ++  GR IH Y+ +      +   + + TSL+DMYAKCG+I  A
Sbjct: 307 NDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAA 366

Query: 558 KRVFDISP-SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
            +V D S  ++ L  +NAMI G+AMHG A  A  +F  +++ GI+PD ITF  +L+ACSH
Sbjct: 367 PQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSH 426

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
           +G+++ G  +F  M  D+ + P +EH+GC+++LL   G   EA  +I TMP +PD  I  
Sbjct: 427 SGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWC 486

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           SLL  C      EL E  ++ L+++EP+NPG+YV LSN YA +G+WNEV ++R ++ +KG
Sbjct: 487 SLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKG 546

Query: 737 LRKN-PGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
           ++K  PGCS I+I   +H F+  D+ HP+  EIY 
Sbjct: 547 MKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYG 581



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 210/432 (48%), Gaps = 64/432 (14%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR--- 141
           LL+ C   +    GQQIH  +LK G  F  + YV T L+  YA+   L+ A ++F R   
Sbjct: 81  LLKSCAKSKTFKEGQQIHGHVLKLG--FDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSH 138

Query: 142 ----------------------------LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
                                       + +K+V SW A+I      G  +KAL  F EM
Sbjct: 139 RDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEM 198

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
            +  V PD   +  V+ AC   G +  GR VH ++   GF   + + ++LID+Y KCG++
Sbjct: 199 MKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEV 258

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           E A ++ +G+  ++V++WN++I GY    L +EA+ +F EM   G  P  V++ SIL A 
Sbjct: 259 ETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPAC 318

Query: 294 ANLDALDEGKQAHAV--AVINGMELDNV--LGSSIINFYSKVGLLEDA-EVVFSRMVERD 348
           A+L A+D G+  H      + G+ + N   L +S+I+ Y+K G ++ A +V  S    R 
Sbjct: 319 AHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRS 378

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA-- 406
           + TWN +I  +   G+     A++  D++++  +        N I   D+     L A  
Sbjct: 379 LSTWNAMIFGFAMHGR-----ANAAFDIFSRMRK--------NGIEPDDITFVGLLSACS 425

Query: 407 --AYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
                DLGR+     +F  M+ +  I+P +  +  +I     +G   EA++M   + ++ 
Sbjct: 426 HSGMLDLGRN-----IFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEM---INTMP 477

Query: 464 VQPNLITWTTLI 475
           ++P+ + W +L+
Sbjct: 478 MEPDGVIWCSLL 489



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 140/543 (25%), Positives = 240/543 (44%), Gaps = 98/543 (18%)

Query: 111 FFARNEYVETKLVVF---YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
            F    Y  ++L+ F       D L  A  +F  +   N   W  +   +        AL
Sbjct: 1   LFPNTHYAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSAL 60

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
             +V M   G+ P+ F  P +LK+C        G+ +HG+VLK+GFD  ++V +SLI MY
Sbjct: 61  KLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMY 120

Query: 228 GKCGDLEEARKVFD--------------------GMIA-----------RNVVAWNSMIV 256
            + G LE+A+KVFD                    G I            ++VV+WN+MI 
Sbjct: 121 AQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMIS 180

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           GY + G  ++A+ +F EM    V+P   ++ +++SA A   +++ G+Q H+    +G   
Sbjct: 181 GYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGS 240

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY----------------V 360
           +  + +++I+ YSK G +E A  +   +  +D+++WN LI  Y                +
Sbjct: 241 NLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEML 300

Query: 361 QSGQS--DVVVAS--------------------------------------SIVDMYAKC 380
           +SG++  DV + S                                      S++DMYAKC
Sbjct: 301 RSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKC 360

Query: 381 ERIDNAKQVFNSIIL-RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
             ID A QV +S    R +  WN ++  +A  GR+  A  +F +M+  GI P+ I++  +
Sbjct: 361 GDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGL 420

Query: 440 ILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +     +G ++  +++F  M Q   + P L  +  +I  L  +    EA    +EM+ T 
Sbjct: 421 LSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEA----EEMINTM 476

Query: 499 IKPSTTTITCA-LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
                  I C+ L AC    +L  G +    LI+ +   P   V  L ++YA  G  ++ 
Sbjct: 477 PMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVL-LSNIYATAGKWNEV 535

Query: 558 KRV 560
            ++
Sbjct: 536 XKI 538



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 158/326 (48%), Gaps = 21/326 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++    ++A++L  EM   N +        ++  C     +  G+Q+H+ I
Sbjct: 174 SWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWI 233

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             +G  F  N  +   L+  Y+KC  ++ A  L   L  K+V SW  +IG    + L ++
Sbjct: 234 NDHG--FGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKE 291

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF-----VA 220
           AL+ F EM   G +P++  + ++L AC  LG +  GR +H Y+ K    G V      + 
Sbjct: 292 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK-KLKGVVVTNASSLR 350

Query: 221 SSLIDMYGKCGDLEEARKVFD-GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           +SLIDMY KCGD++ A +V D     R++  WN+MI G+  +G    A  +F  M   G+
Sbjct: 351 TSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGI 410

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGL 333
           EP  ++   +LSA ++   LD G+      +   M  D  +   +      I+     GL
Sbjct: 411 EPDDITFVGLLSACSHSGMLDLGRN-----IFRSMRQDYNITPKLEHYGCMIDLLGHSGL 465

Query: 334 LEDAEVVFSRM-VERDIVTWNLLIAS 358
            ++AE + + M +E D V W  L+ +
Sbjct: 466 FKEAEEMINTMPMEPDGVIWCSLLKA 491


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 193/585 (32%), Positives = 322/585 (55%), Gaps = 52/585 (8%)

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            V  A++ I    + G++E AR  F+ M  R   ++N+++ GY +N L + A+RVF+ M 
Sbjct: 16  AVVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRM- 74

Query: 276 LEGVEPTR-VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
                PTR ++  + L +  +L        A A+A I       V  +S++  Y + GLL
Sbjct: 75  -----PTRDLASYNALISGLSLRRHTLPDAAAALATIP-YPPSVVSFTSLLRGYVRHGLL 128

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCE 381
            DA  +F +M ER+ +++ +L+  ++ +G+              DVV  ++++  Y +  
Sbjct: 129 ADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVG 188

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           R+D A+ +F+ +  R+VV W  +++ YA  G+   A +LF  M       N +SW +++ 
Sbjct: 189 RVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMP----ERNEVSWTAMLF 244

Query: 442 GFLRNGQMNEAKDMFLQM--QSLGVQPNLI-------------------------TWTTL 474
           G+++ G++ +A+++F  M    L     +I                         TW+ +
Sbjct: 245 GYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAI 304

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           I    QN    EA+  F+EML  GI+P+  ++   L+ C  +A L  GR +HG ++R   
Sbjct: 305 IKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSF 364

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
            +    V++L+ MY KCGN+ +AKRVF +   K++ ++N+MI+GYA HGL  EAL +F +
Sbjct: 365 DMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDD 424

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           ++  G+ PD IT+   L ACS+ G V EG ++F  M +   +KP +EH+ C+V+LL R G
Sbjct: 425 MRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAG 484

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            +DEAL +I TMP +PDA I G+L+  C      E+AE  ++ LL+LEP N G YV LS+
Sbjct: 485 LVDEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGNAGPYVLLSH 544

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
            Y +SGRW + S +R  +  + L K+ GCSWI+  + +H+F + D
Sbjct: 545 IYTSSGRWEDASNMRKFISSRHLNKSLGCSWIEYDKRVHLFKSGD 589



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 132/244 (54%), Gaps = 12/244 (4%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++V + +   +D A  +F R+  ++  +W+AII    +     +AL  F EM   G+ P+
Sbjct: 273 MIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPN 332

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
              + ++L  C AL  + +GR VHG +L+  FD  ++  S+LI MY KCG+L++A++VF 
Sbjct: 333 YPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFH 392

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
               ++VV WNSMI GY Q+GL EEA+ +F +M L G+ P  ++    L+A +    + E
Sbjct: 393 MFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKE 452

Query: 302 GKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDAEVVFSRM-VERDIVTWNL 354
           G+      + N M   + +   +      ++   + GL+++A  +   M VE D V W  
Sbjct: 453 GRD-----IFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGA 507

Query: 355 LIAS 358
           L+ +
Sbjct: 508 LMGA 511



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 199/467 (42%), Gaps = 59/467 (12%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ SL + Y        +   + +A+ L  +M  RN      + G  L           G
Sbjct: 114 SFTSLLRGYV-------RHGLLADAIQLFRQMPERNHISYTVLLGGFLDA---------G 157

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII---G 155
           +   AR L + +  A++    T ++  Y +   +D A  LF  +  +NV SW A++    
Sbjct: 158 RVDEARKLFD-EMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYA 216

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-D 214
            N +V L+ K      E  E            V       G++  GR      L     D
Sbjct: 217 QNGQVNLARKLFEVMPERNE------------VSWTAMLFGYIQAGRIEDAEELFNAMPD 264

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
             +   + +I  +G+ G ++ A+ VFD M  R+   W+++I  Y QN    EA+  F EM
Sbjct: 265 HPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREM 324

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
              G+ P   SV SIL+  A L  LD G++ H   +    ++D    S++I  Y K G L
Sbjct: 325 LHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNL 384

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI- 393
           + A+ VF     +D+V WN +I  Y Q G                    + A  +F+ + 
Sbjct: 385 DKAKRVFHMFEPKDVVMWNSMITGYAQHGLG------------------EEALHIFDDMR 426

Query: 394 ---ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQM 449
              ++ D + +   L A +  G+  E   +F  M+ + GI P +  +  ++    R G +
Sbjct: 427 LAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLV 486

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           +EA  ++L ++++ V+P+ + W  L+     +     A +  +++LE
Sbjct: 487 DEA--LYL-IKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLE 530



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 15/249 (6%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+++H  +L+    F  + Y  + L+  Y KC  LD A R+F     K+V  W ++I   
Sbjct: 352 GREVHGAMLRRS--FDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGY 409

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV-LKVGFDGC 216
            + GL E+AL  F +M+  G+ PD       L AC   G V  GR +   +  K G    
Sbjct: 410 AQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPG 469

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
           +   + ++D+ G+ G ++EA  +   M +  + V W +++ G  +   N E   +  +  
Sbjct: 470 LEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALM-GACRMHKNAEIAEISAKKL 528

Query: 276 LEGVEPTR----VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
           LE +EP      V ++ I ++S   +     ++      I+   L+  LG S I +  +V
Sbjct: 529 LE-LEPGNAGPYVLLSHIYTSSGRWEDASNMRK-----FISSRHLNKSLGCSWIEYDKRV 582

Query: 332 GLLEDAEVV 340
            L +  +V+
Sbjct: 583 HLFKSGDVL 591


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 204/610 (33%), Positives = 318/610 (52%), Gaps = 62/610 (10%)

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           M+ K G L +AR VF  M  R+ V+W  M+VG  + G   EAI+   +MT +G  PT+ +
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           +T++LS+ A   A   G++ H+  V  G+     + +S++N Y K G  E A  VF RM 
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 346 -------------------------------ERDIVTWNLLIASYVQSG----------- 363
                                          +R IV+WN +IA Y Q+G           
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 364 -------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT-----LLAAYADL 411
                    D    +S++   A    +   KQV ++ ILR  + +N+     L++ YA  
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQV-HAYILRTEMAYNSQVTNALISTYAKS 239

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
           G    A R+  Q     +  N+IS+ +++ G+++ G M  A++MF  M +  V    + W
Sbjct: 240 GSVENARRIMDQSMETDL--NVISFTALLEGYVKIGDMESAREMFGVMNNRDV----VAW 293

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           T +I G  QN   +EAI  F+ M+  G +P++ T+   LS C  +A L  G+ IH   IR
Sbjct: 294 TAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIR 353

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALA 590
             L   + +  +++ MYA+ G+   A+R+FD +   KE   + +MI   A HG   EA+ 
Sbjct: 354 SLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVG 413

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF+ + + G++PD IT+  +L+ACSHAG VNEG   +  + ++HQ+ P M H+ C+V+LL
Sbjct: 414 LFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLL 473

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
           +R G   EA   I  MP +PDA   GSLLS C      ELAE  +E LL ++P+N G Y 
Sbjct: 474 ARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYS 533

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
           A++N Y+A GRW++ +++    KEK +RK  G SW  I  ++HVF A D  HP+ + +YA
Sbjct: 534 AIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYA 593

Query: 771 TLALLGMHVR 780
             A +   ++
Sbjct: 594 MAARMWEEIK 603



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 167/609 (27%), Positives = 274/609 (44%), Gaps = 129/609 (21%)

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAA-IIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
            +AK   L  A  +F  +  ++  SW   ++GLN R G   +A+   ++M  DG +P  F
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLN-RAGRFGEAIKTLLDMTADGFTPTQF 59

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
            L NVL +C        GR VH +V+K+G   CV VA+S+++MYGKCGD E A  VF+ M
Sbjct: 60  TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 244 IARNV-------------------------------VAWNSMIVGYVQNGLNEEAIRVFY 272
             R+V                               V+WN+MI GY QNGL+ +A+++F 
Sbjct: 120 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 179

Query: 273 EMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
            M  E  + P   ++TS+LSA ANL  +  GKQ HA  +   M  ++ + +++I+ Y+K 
Sbjct: 180 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 239

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
           G +E+A  +  + +E D+                +V+  +++++ Y K   +++A+++F 
Sbjct: 240 GSVENARRIMDQSMETDL----------------NVISFTALLEGYVKIGDMESAREMFG 283

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW--------------- 436
            +  RDVV W  ++  Y   GR+ EA  LF  M   G  PN  +                
Sbjct: 284 VMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDY 343

Query: 437 --------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
                               N++I  + R+G    A+ MF Q   +  +   ITWT++I 
Sbjct: 344 GKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQ---VCWRKETITWTSMIV 400

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
            L Q+  G EA+  F+EML  G++P   T    LSAC+    +  G+             
Sbjct: 401 ALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGK------------- 447

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
                      Y +  N HQ      I+P  E+  Y  M+   A  GL  EA    + + 
Sbjct: 448 ---------RYYDQIKNEHQ------IAP--EMSHYACMVDLLARAGLFSEAQEFIRRMP 490

Query: 597 QKGIDPDSITFTNILNAC---SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
              ++PD+I + ++L+AC    +A L     E  + +  ++        +  + N+ S C
Sbjct: 491 ---VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGA-----YSAIANVYSAC 542

Query: 654 GNLDEALRV 662
           G   +A R+
Sbjct: 543 GRWSDAARI 551



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 143/552 (25%), Positives = 245/552 (44%), Gaps = 95/552 (17%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +  L++  +  EA+  L +M    F         +L  C   +    G+++H+ +
Sbjct: 25  SWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFV 84

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV----- 160
           +K G        V   ++  Y KC   + A+ +F R+ V++V SW A++ LN  +     
Sbjct: 85  VKLG--LGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDL 142

Query: 161 --------------------------GLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACG 193
                                     GL  KAL  F  M  E  ++PD F + +VL AC 
Sbjct: 143 AESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACA 202

Query: 194 ALGWVGFGRAVHGYVLKVGF---------------------------------DGCVFVA 220
            LG V  G+ VH Y+L+                                    D  V   
Sbjct: 203 NLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISF 262

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L++ Y K GD+E AR++F  M  R+VVAW +MIVGY QNG N+EAI +F  M   G E
Sbjct: 263 TALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE 322

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P   ++ ++LS  A+L  LD GKQ H  A+ + +E  + + ++II  Y++ G    A  +
Sbjct: 323 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRM 382

Query: 341 FSRMVER-DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
           F ++  R + +TW  +I +  Q GQ +              E +   +++  + +  D +
Sbjct: 383 FDQVCWRKETITWTSMIVALAQHGQGE--------------EAVGLFEEMLRAGVEPDRI 428

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
            +  +L+A +  G   E  R + Q++ E  I+P +  +  ++    R G  +EA++   +
Sbjct: 429 TYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRR 488

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL----SAC- 513
           M    V+P+ I W +L+S    +     A L  +++L   I P+ +    A+    SAC 
Sbjct: 489 MP---VEPDAIAWGSLLSACRVHKNAELAELAAEKLL--SIDPNNSGAYSAIANVYSACG 543

Query: 514 --TDVASLRNGR 523
             +D A +   R
Sbjct: 544 RWSDAARIWKAR 555



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 195/424 (45%), Gaps = 63/424 (14%)

Query: 28  THLTKLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG 83
           THL ++  +++ +ES+      S+   I+  ++     +A+ L + M      + P+ + 
Sbjct: 135 THLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM-LHESSMAPDEFT 193

Query: 84  --ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASR---- 137
              +L  C    ++  G+Q+HA IL+     A N  V   L+  YAK  +++ A R    
Sbjct: 194 ITSVLSACANLGNVRIGKQVHAYILRTE--MAYNSQVTNALISTYAKSGSVENARRIMDQ 251

Query: 138 -----------------------------LFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
                                        +F  +  ++V +W A+I    + G +++A+ 
Sbjct: 252 SMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAID 311

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F  M   G  P+++ L  VL  C +L  + +G+ +H   ++   +    V++++I MY 
Sbjct: 312 LFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYA 371

Query: 229 KCGDLEEARKVFDGMIARN-VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
           + G    AR++FD +  R   + W SMIV   Q+G  EEA+ +F EM   GVEP R++  
Sbjct: 372 RSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYV 431

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLG--SSIINFYSKVGLLEDAEVVFSRM- 344
            +LSA ++   ++EGK+ +   + N  ++   +   + +++  ++ GL  +A+    RM 
Sbjct: 432 GVLSACSHAGFVNEGKRYYD-QIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP 490

Query: 345 VERDIVTW-NLLIASYVQSGQSDVVVA---------------SSIVDMYAKCERIDNAKQ 388
           VE D + W +LL A  V        +A               S+I ++Y+ C R  +A +
Sbjct: 491 VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAAR 550

Query: 389 VFNS 392
           ++ +
Sbjct: 551 IWKA 554


>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g17630
 gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
 gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 731

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 214/688 (31%), Positives = 360/688 (52%), Gaps = 57/688 (8%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF---CRLRVKNVFSWAAIIG 155
           +Q+HA++L + DF  R+  +   L+  YA+   L  A  +F     + + ++  W +I+ 
Sbjct: 73  RQVHAQVLLS-DFIFRSGSLAANLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILK 131

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
            N   GL E AL  +  M++ G++ D ++LP +L+AC  LG  G  RA H  V+++G   
Sbjct: 132 ANVSHGLYENALELYRGMRQRGLTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKE 191

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            + V + L+ +Y K G + +A  +F  M  RN ++WN MI G+ Q    E A+++F  M 
Sbjct: 192 NLHVVNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQ 251

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            E  +P  V+ TS+LS  +     ++        V+    L  + G+++          E
Sbjct: 252 REEFKPDEVTWTSVLSCHSQCGKFED--------VLKYFHLMRMSGNAVSG--------E 295

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
              V FS   E + ++    +  YV  G  +  + S                        
Sbjct: 296 ALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSR----------------------- 332

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
                 N L+  Y   G+  +A  LF Q++ +GI     SWNS+I  F+  G+++EA  +
Sbjct: 333 ------NALIHVYGKQGKVKDAEHLFRQIRNKGIE----SWNSLITSFVDAGKLDEALSL 382

Query: 456 FLQMQSLG----VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           F +++ +     V+ N++TWT++I G      G++++ +F++M  + +  ++ TI C LS
Sbjct: 383 FSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILS 442

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
            C ++ +L  GR IHG++IR  +     +  +LV+MYAKCG + +   VF+    K+L  
Sbjct: 443 ICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLIS 502

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           +N++I GY MHG A +AL++F  +   G  PD I    +L+ACSHAGLV +G E+F  M 
Sbjct: 503 WNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMS 562

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
               ++P  EH+ C+V+LL R G L EA  ++  MP +P   ++G+LL++C      ++A
Sbjct: 563 KRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIA 622

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           E I+  L  LEP+  G+Y+ LSN Y+A GRW E + VR + K+K L+K  G SWI++ ++
Sbjct: 623 EGIASQLSVLEPERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLKKVSGSSWIEVKKK 682

Query: 752 LHVFVACDRSHPKTEEIYATLALLGMHV 779
            + F +      + E IY  L  L  H+
Sbjct: 683 KYKFSSGSIVQSEFETIYPVLEDLVSHM 710


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 193/627 (30%), Positives = 324/627 (51%), Gaps = 94/627 (14%)

Query: 232 DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
           +++ AR VFD +   +VV WN MI  Y  +G  +++I ++  M   GV PT  +   +L 
Sbjct: 56  EIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLK 115

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV--ERDI 349
           A ++L AL  G+  H  A I G+ +D  + +++++ Y+K G L  A+ +F+ +   +RDI
Sbjct: 116 ACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDI 175

Query: 350 VTWNLLIASY----------------------------------------VQSGQS---- 365
           V WN +IA++                                        +  G++    
Sbjct: 176 VAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAY 235

Query: 366 --------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN--------------- 402
                   +VV+ ++++DMYAKC  +  A+++FN++  ++ V W+               
Sbjct: 236 YIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDA 295

Query: 403 ---------------------TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
                                T+L A A L       +L   M   G+  +    NS+I 
Sbjct: 296 LALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLIS 355

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
            + + G M+ A     +M    +  + ++++ +ISG  QN    +A+L F++M  +GI P
Sbjct: 356 MYAKCGIMDNAVGFLDEM----IAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAP 411

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
              T+   L AC+ +A+L++G   HGY +       T I  +++DMY+KCG I  ++ +F
Sbjct: 412 YLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIF 471

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           D   ++++  +N MI GY +HGL VEAL+LF+ LQ  G+ PD +T   +L+ACSH+GLV 
Sbjct: 472 DRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVT 531

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           EG   F  M  +  +KP M H+ C+V+LL+R GNLDEA   I  MP  P+  I G+LL+ 
Sbjct: 532 EGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAA 591

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C      E+ E +S+ +  L P+  GN+V +SN Y++ GRW++ + +R I +  G +K+P
Sbjct: 592 CRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSP 651

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEI 768
           GCSW++I   +HVF+   +SHP++  I
Sbjct: 652 GCSWVEISGVIHVFIGGHQSHPQSASI 678



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 241/497 (48%), Gaps = 61/497 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL-- 142
           LL+ C   + +  G+ IH      G   + + YV T L+  YAKC  L  A  LF  +  
Sbjct: 113 LLKACSSLQALQLGRLIHTHAHILG--LSMDLYVSTALLHMYAKCGHLYQAQTLFNSISH 170

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
           + +++ +W A+I       L  + +    +MQ+ GV+P++  L ++L   G    +  G+
Sbjct: 171 QDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGK 230

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
           A+H Y ++  F   V + ++L+DMY KC  L  ARK+F+ +  +N V W++MI GYV + 
Sbjct: 231 AIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHD 290

Query: 263 LNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
              +A+ ++ +M  + G+ PT  ++ ++L A A L  L  GK+ H   + +GM+LD  +G
Sbjct: 291 SISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVG 350

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------------- 365
           +S+I+ Y+K G++++A      M+ +D V+++ +I+  VQ+G +                
Sbjct: 351 NSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIA 410

Query: 366 ------------------------------------DVVVASSIVDMYAKCERIDNAKQV 389
                                               D  + ++I+DMY+KC +I  ++++
Sbjct: 411 PYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREI 470

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F+ +  RD++ WNT++  Y   G   EA  LF ++Q  G+ P+ ++  +V+     +G +
Sbjct: 471 FDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLV 530

Query: 450 NEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
            E K  F  M Q+  ++P +  +  ++  L +    +EA  F Q M      P+      
Sbjct: 531 TEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRM---PFVPNVRIWGA 587

Query: 509 ALSACTDVASLRNGRAI 525
            L+AC    ++  G  +
Sbjct: 588 LLAACRTHKNIEMGEQV 604



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 159/303 (52%), Gaps = 7/303 (2%)

Query: 60  IREAVDLLTEMKC-RNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           I +A+ L  +M C       P     +L+ C    D+  G+++H  ++K+G     +  V
Sbjct: 292 ISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSG--MDLDTTV 349

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
              L+  YAKC  +D A      +  K+  S++AII    + G +EKAL+ F +MQ  G+
Sbjct: 350 GNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGI 409

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           +P    +  +L AC  L  +  G   HGY +  GF     + +++IDMY KCG +  +R+
Sbjct: 410 APYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISRE 469

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +FD M  R++++WN+MI+GY  +GL  EA+ +F E+   G++P  V++ ++LSA ++   
Sbjct: 470 IFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGL 529

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSI--INFYSKVGLLEDAEVVFSRM-VERDIVTWNLL 355
           + EGK   + ++     +   +   I  ++  ++ G L++A     RM    ++  W  L
Sbjct: 530 VTEGKYWFS-SMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGAL 588

Query: 356 IAS 358
           +A+
Sbjct: 589 LAA 591


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  346 bits (888), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 207/662 (31%), Positives = 339/662 (51%), Gaps = 90/662 (13%)

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           F + +H  ++  G    +F+++ L+++Y   GD+  +R  FD +  ++V AWNSMI  YV
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 260 QNGLNEEAIRVFYEMTL-EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            NG   EAI  FY++ L   + P   +   +L A   L    +G++ H  A   G + + 
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNV 250

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS------------- 365
            + +S+I+ YS+ G    A  +F  M  RD+ +WN +I+  +Q+G +             
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 366 ---------------------------------------DVVVASSIVDMYAKCERIDNA 386
                                                  D+ V++++++MYAK   +++A
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV------- 439
           ++ F  + + DVV WN+++AAY        A   F +MQL G  P++++  S+       
Sbjct: 371 RKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQS 430

Query: 440 --------ILGF-LRNGQM-------NEAKDMFLQMQSLG-------VQP--NLITWTTL 474
                   + GF +R G +       N   DM+ ++  L        + P  ++I+W TL
Sbjct: 431 RDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTL 490

Query: 475 ISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           I+G  QN   +EAI  ++ M E   I P+  T    L A   V +L+ G  IHG +I+ +
Sbjct: 491 ITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTN 550

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
           L L   + T L+D+Y KCG +  A  +F   P +    +NA+IS + +HG A + L LF 
Sbjct: 551 LHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFG 610

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            +  +G+ PD +TF ++L+ACSH+G V EG   F  +  ++ +KPS++H+GC+V+LL R 
Sbjct: 611 EMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGRA 669

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G L+ A   I  MP  PDA I G+LL  C      EL ++ S+ L +++  N G YV LS
Sbjct: 670 GYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLS 729

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           N YA  G+W  V +VR + +E+GL+K PG S I++  ++ VF   ++SHPK +EIY  L 
Sbjct: 730 NIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELR 789

Query: 774 LL 775
           +L
Sbjct: 790 VL 791



 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 214/435 (49%), Gaps = 27/435 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS L +     +A+D+L EM+    ++       +L  C    D+ T   IH  +
Sbjct: 283 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV 342

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K+G  F  + +V   L+  YAK   L+ A + F ++ + +V SW +II    +      
Sbjct: 343 IKHGLEF--DLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVT 400

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF---DGCVFVASS 222
           A   FV+MQ +G  PD   L ++             R+VHG++++ G+   D  V + ++
Sbjct: 401 AHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMED--VVIGNA 458

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE-- 280
           ++DMY K G L+ A KVF+ +  ++V++WN++I GY QNGL  EAI V Y+M  E  E  
Sbjct: 459 VVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEV-YKMMEECKEII 517

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P + +  SIL A A++ AL +G + H   +   + LD  + + +I+ Y K G L DA  +
Sbjct: 518 PNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 577

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F ++ +   VTWN +I+ +   G      A   + ++   E +D         +  D V 
Sbjct: 578 FYQVPQESSVTWNAIISCHGIHGH-----AEKTLKLFG--EMLDEG-------VKPDHVT 623

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           + +LL+A +  G   E    F  MQ  GI P++  +  ++    R G +  A D    ++
Sbjct: 624 FVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDF---IK 680

Query: 461 SLGVQPNLITWTTLI 475
            + +QP+   W  L+
Sbjct: 681 DMPLQPDASIWGALL 695


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  346 bits (888), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 209/658 (31%), Positives = 341/658 (51%), Gaps = 91/658 (13%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI----- 255
           GR+VH  ++K G    V++ ++L+  Y K G L  A  VFD M  ++  +WN++I     
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 256 --------------------------VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
                                     VGY Q GL + AI +F +M  E V P++ +V+++
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           LS+ A    LD G++ H+  V  G+     + +S++N Y+K G    A+VVF RM  ++I
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 350 VTWNLLIASYVQSGQ-------------SDVVVASSIVDMY------------------- 377
            TWN LI+ Y+QSGQ              D+V  +S++  Y                   
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNE 268

Query: 378 -----------------AKCERIDNAKQVFNSIILRDV----VLWNTLLAAYADLGRSGE 416
                            A  E+++  KQ+   I+  +      + N L++ YA  G   E
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSG-GVE 327

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
            +RL  +      + NII++ S++ G+ + G +  A+++F +++   V    + WT +I 
Sbjct: 328 IARLIVEHNRTS-NLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDV----VAWTAMIV 382

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           G  QN   N+A+  F+ M+  G +P++ T+   LS  + +  L +G+ IH   I+     
Sbjct: 383 GYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESS 442

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDI-SPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
              +  +L+ MYAK GNI+ AKRVFD+ +  KE+  + +MI   A HGL  EA+ LF+ +
Sbjct: 443 TPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERM 502

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
              G+ PD IT+  +L+AC+H GLV +G + +  M   H+++P++ H+ C+++L  R G 
Sbjct: 503 LSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGL 562

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           L EA   I +MP +PD    GSLL++C      +LA+  +E LL ++P N G Y+AL+N 
Sbjct: 563 LQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANV 622

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           Y+A G+W   +Q R +MK++G+RK  G SWI I  E+H F   D  HP+ +EIY  +A
Sbjct: 623 YSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMA 680



 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 178/644 (27%), Positives = 278/644 (43%), Gaps = 154/644 (23%)

Query: 70  MKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129
           M+  N     E +  +LQ  V  +D + G+ +H +I+K G       Y+   L+ FYAK 
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGV--YLMNNLMTFYAKT 58

Query: 130 DALDVASRLFCRLRVKNVFSW--------------------------------AAIIGLN 157
            +L  A  +F  + +K+ FSW                                A I+G N
Sbjct: 59  GSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYN 118

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            + GL + A+  F +M  + V P  F + NVL +C A   +  GR +H +V+K+G   CV
Sbjct: 119 -QFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCV 177

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARN------------------------------ 247
            VA+SL++MY KCGD   A+ VFD M  +N                              
Sbjct: 178 PVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDR 237

Query: 248 -VVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQA 305
            +V+WNSMI GY Q G N EA+ +F +M  E  ++P   ++ SILSA ANL+ L+ GKQ 
Sbjct: 238 DIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQI 297

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           HA  +    E    +G+++I+ Y+K G +E A                 LI  + ++   
Sbjct: 298 HAYILRAETETSGAVGNALISMYAKSGGVEIAR----------------LIVEHNRTSNL 341

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           +++  +S++D Y K   +  A+++FN +  RDVV W  ++  Y   G   +A  LF  M 
Sbjct: 342 NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMV 401

Query: 426 LEGISPNIISW-----------------------------------NSVILGFLRNGQMN 450
            EG  PN  +                                    N++I  + + G +N
Sbjct: 402 NEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNIN 461

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
            AK +F        +  +++WT++I  L Q+  G EAI  F+ ML  G+KP   T    L
Sbjct: 462 VAKRVFDLPNG---KKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVL 518

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
           SACT V  +  GR  +  +                              V +I P+  L 
Sbjct: 519 SACTHVGLVEQGRKYYNMM----------------------------TEVHEIEPT--LS 548

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
            Y  MI  Y   GL  EA    +++    I+PD+I + ++L +C
Sbjct: 549 HYACMIDLYGRAGLLQEAYLFIESMP---IEPDNIAWGSLLASC 589



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 184/403 (45%), Gaps = 67/403 (16%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEM------KCRNFQIGPEIYGELLQGCVYKRDMYTGQ 99
           S+   IS  S++    EA+ + ++M      K  NF +       +L  C     +  G+
Sbjct: 241 SWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLA-----SILSACANLEKLNIGK 295

Query: 100 QIHARILKNG------------DFFARNEYVE-------------------TKLVVFYAK 128
           QIHA IL+                +A++  VE                   T L+  Y K
Sbjct: 296 QIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188
              +  A  +F +LR ++V +W A+I    + GL   AL  F  M  +G  P+++ L  +
Sbjct: 356 LGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAM 415

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-GMIARN 247
           L    +L  +  G+ +H   +K G      V ++LI MY K G++  A++VFD     + 
Sbjct: 416 LSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKE 475

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           +V+W SMI+   Q+GL +EAI +F  M   G++P  ++   +LSA  ++  +++G++ + 
Sbjct: 476 IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYN 535

Query: 308 VAVINGMELDNVLG--SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS------ 358
           + +    E++  L   + +I+ Y + GLL++A +    M +E D + W  L+AS      
Sbjct: 536 M-MTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKN 594

Query: 359 ------------YVQSGQSDVVVASSIVDMYAKCERIDNAKQV 389
                        +  G S   +A  + ++Y+ C + +NA Q 
Sbjct: 595 ADLAKVAAERLLLIDPGNSGAYLA--LANVYSACGKWENAAQT 635


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 202/655 (30%), Positives = 340/655 (51%), Gaps = 93/655 (14%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V +++ L+++Y   G++  AR  FD +  R+V AWN MI GY + G + E IR F    L
Sbjct: 86  VCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFML 145

Query: 277 E-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
             G+ P   +  S+L A   +    +G + H +A+  G   D  + +S+I+ YS+   + 
Sbjct: 146 SSGLTPDYRTFPSVLKACRTVI---DGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVG 202

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSG-------------------------------- 363
           +A ++F  M  RD+ +WN +I+ Y QSG                                
Sbjct: 203 NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGD 262

Query: 364 ----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                           +S++ V++ ++D+YA+  R+ + ++VF+ + +RD++ WN+++ A
Sbjct: 263 FNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKA 322

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIIS----------------------------W--- 436
           Y    +   A  LF +M+L  I P+ ++                            W   
Sbjct: 323 YELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLE 382

Query: 437 -----NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
                N+V++ + + G ++ A+ +F  + +     ++I+W T+ISG  QN   +EAI  +
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPN----TDVISWNTIISGYAQNGFASEAIEMY 438

Query: 492 QEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
             M E G I  +  T    L AC+   +LR G  +HG L+++ L L   +VTSL DMY K
Sbjct: 439 NIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGK 498

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           CG +  A  +F   P      +N +I+ +  HG   +A+ LFK +  +G+ PD ITF  +
Sbjct: 499 CGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTL 558

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L+ACSH+GLV+EG   F  M +D+ + PS++H+GC+V++  R G L+ AL+ I +M   P
Sbjct: 559 LSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQP 618

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
           DA I G+LLS C      +L +  SEHL ++EP++ G +V LSN YA++G+W  V ++R 
Sbjct: 619 DASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRS 678

Query: 731 IMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           I   KGLRK PG S +++  ++ VF   +++HP  EE+Y  L  L   ++++  V
Sbjct: 679 IAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYV 733



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 194/396 (48%), Gaps = 22/396 (5%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL  C    D   G  IH+  +K+G       +V  KL+  YA+   L    ++F R+ V
Sbjct: 253 LLSACTEAGDFNRGVTIHSYSIKHG--LESELFVSNKLIDLYAEFGRLRDCQKVFDRMYV 310

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +++ SW +II          +A+  F EM+   + PD   L ++      LG +   R+V
Sbjct: 311 RDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSV 370

Query: 205 HGYVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
            G+ L+ G F   + + ++++ MY K G ++ AR VF+ +   +V++WN++I GY QNG 
Sbjct: 371 QGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGF 430

Query: 264 NEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             EAI ++  M  EG +   + +  S+L A +   AL +G + H   + NG+ LD  + +
Sbjct: 431 ASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVT 490

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
           S+ + Y K G LEDA  +F ++   + V WN LIA +   G  +  V             
Sbjct: 491 SLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVML----------- 539

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVIL 441
               K++ +  +  D + + TLL+A +  G   E    F  MQ + GI+P++  +  ++ 
Sbjct: 540 ---FKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVD 596

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            + R GQ+  A      ++S+ +QP+   W  L+S 
Sbjct: 597 MYGRAGQLETALKF---IKSMSLQPDASIWGALLSA 629



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 28/252 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  C     +  G ++H R+LKNG +   + +V T L   Y KC  L+ A  LF ++  
Sbjct: 457 VLPACSQAGALRQGMKLHGRLLKNGLYL--DVFVVTSLADMYGKCGRLEDALSLFYQIPR 514

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
            N   W  +I  +   G  EKA++ F EM ++GV PD+     +L AC   G V  G+  
Sbjct: 515 VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWC 574

Query: 205 -------HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIV 256
                  +G    +   GC      ++DMYG+ G LE A K    M +  +   W +++ 
Sbjct: 575 FEMMQTDYGITPSLKHYGC------MVDMYGRAGQLETALKFIKSMSLQPDASIWGALLS 628

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS----ASANLDALDE------GKQAH 306
               +G N +  ++  E   E VEP  V    +LS    ++   + +DE      GK   
Sbjct: 629 ACRVHG-NVDLGKIASEHLFE-VEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLR 686

Query: 307 AVAVINGMELDN 318
                + ME+DN
Sbjct: 687 KTPGWSSMEVDN 698


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 209/658 (31%), Positives = 341/658 (51%), Gaps = 91/658 (13%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI----- 255
           GR+VH  ++K G    V++ ++L+  Y K G L  A  VFD M  ++  +WN++I     
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 256 --------------------------VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
                                     VGY Q GL + AI +F +M  E V P++ +V+++
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           LS+ A    LD G++ H+  V  G+     + +S++N Y+K G    A+VVF RM  ++I
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 350 VTWNLLIASYVQSGQ-------------SDVVVASSIVDMY------------------- 377
            TWN LI+ Y+QSGQ              D+V  +S++  Y                   
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNE 268

Query: 378 -----------------AKCERIDNAKQVFNSIILRDV----VLWNTLLAAYADLGRSGE 416
                            A  E+++  KQ+   I+  +      + N L++ YA  G   E
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSG-GVE 327

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
            +RL  +      + NII++ S++ G+ + G +  A+++F +++   V    + WT +I 
Sbjct: 328 IARLIVEHNRTS-NLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDV----VAWTAMIV 382

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           G  QN   N+A+  F+ M+  G +P++ T+   LS  + +  L +G+ IH   I+     
Sbjct: 383 GYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESS 442

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDI-SPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
              +  +L+ MYAK GNI+ AKRVFD+ +  KE+  + +MI   A HGL  EA+ LF+ +
Sbjct: 443 TPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERM 502

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
              G+ PD IT+  +L+AC+H GLV +G + +  M   H+++P++ H+ C+++L  R G 
Sbjct: 503 LSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGL 562

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           L EA   I +MP +PD    GSLL++C      +LA+  +E LL ++P N G Y+AL+N 
Sbjct: 563 LQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANV 622

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           Y+A G+W   +Q R +MK++G+RK  G SWI I  E+H F   D  HP+ +EIY  +A
Sbjct: 623 YSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMA 680



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 178/644 (27%), Positives = 278/644 (43%), Gaps = 154/644 (23%)

Query: 70  MKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129
           M+  N     E +  +LQ  V  +D + G+ +H +I+K G       Y+   L+ FYAK 
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGV--YLMNNLMTFYAKT 58

Query: 130 DALDVASRLFCRLRVKNVFSW--------------------------------AAIIGLN 157
            +L  A  +F  + +K+ FSW                                A I+G N
Sbjct: 59  GSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYN 118

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            + GL + A+  F +M  + V P  F + NVL +C A   +  GR +H +V+K+G   CV
Sbjct: 119 -QFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCV 177

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARN------------------------------ 247
            VA+SL++MY KCGD   A+ VFD M  +N                              
Sbjct: 178 PVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDR 237

Query: 248 -VVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQA 305
            +V+WNSMI GY Q G N EA+ +F +M  E  ++P   ++ SILSA ANL+ L+ GKQ 
Sbjct: 238 DIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQI 297

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           HA  +    E    +G+++I+ Y+K G +E A                 LI  + ++   
Sbjct: 298 HAYILRAETETSGAVGNALISMYAKSGGVEIAR----------------LIVEHNRTSNL 341

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           +++  +S++D Y K   +  A+++FN +  RDVV W  ++  Y   G   +A  LF  M 
Sbjct: 342 NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMV 401

Query: 426 LEGISPNIISW-----------------------------------NSVILGFLRNGQMN 450
            EG  PN  +                                    N++I  + + G +N
Sbjct: 402 NEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNIN 461

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
            AK +F        +  +++WT++I  L Q+  G EAI  F+ ML  G+KP   T    L
Sbjct: 462 VAKRVFDLPNG---KKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVL 518

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
           SACT V  +  GR  +  +                              V +I P+  L 
Sbjct: 519 SACTHVGLVEQGRKYYNMMT----------------------------EVHEIEPT--LS 548

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
            Y  MI  Y   GL  EA    +++    I+PD+I + ++L +C
Sbjct: 549 HYACMIDLYGRAGLLQEAYLFIESMP---IEPDNIAWGSLLASC 589



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 184/403 (45%), Gaps = 67/403 (16%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEM------KCRNFQIGPEIYGELLQGCVYKRDMYTGQ 99
           S+   IS  S++    EA+ + ++M      K  NF +       +L  C     +  G+
Sbjct: 241 SWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLA-----SILSACANLEKLNIGK 295

Query: 100 QIHARILKNG------------DFFARNEYVE-------------------TKLVVFYAK 128
           QIHA IL+                +A++  VE                   T L+  Y K
Sbjct: 296 QIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188
              +  A  +F +LR ++V +W A+I    + GL   AL  F  M  +G  P+++ L  +
Sbjct: 356 LGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAM 415

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-GMIARN 247
           L    +L  +  G+ +H   +K G      V ++LI MY K G++  A++VFD     + 
Sbjct: 416 LSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKE 475

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           +V+W SMI+   Q+GL +EAI +F  M   G++P  ++   +LSA  ++  +++G++ + 
Sbjct: 476 IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYN 535

Query: 308 VAVINGMELDNVLG--SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS------ 358
           + +    E++  L   + +I+ Y + GLL++A +    M +E D + W  L+AS      
Sbjct: 536 M-MTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKN 594

Query: 359 ------------YVQSGQSDVVVASSIVDMYAKCERIDNAKQV 389
                        +  G S   +A  + ++Y+ C + +NA Q 
Sbjct: 595 ADLAKVAAERLLLIDPGNSGAYLA--LANVYSACGKWENAAQT 635


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 198/558 (35%), Positives = 298/558 (53%), Gaps = 61/558 (10%)

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V + LI        L+ A  +F      N+  +N++I G  +N   E ++  F  M    
Sbjct: 74  VVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLS 133

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           + P R+++  +L + A L  +  G+  H   +  G+E D+                    
Sbjct: 134 IRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSF------------------- 174

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD- 397
                                         V  S+VDMY K   +    Q+F+    R+ 
Sbjct: 175 ------------------------------VRVSLVDMYVKIGELGFGLQLFDESPQRNK 204

Query: 398 ---VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
              ++LWN L+     +G   +A+ LF  M       N  SWNS+I GF+RNG ++ A++
Sbjct: 205 AESILLWNVLINGCCKVGDLSKAASLFEAMP----ERNAGSWNSLINGFVRNGDLDRARE 260

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F+QM     + N+++WTT+I+G +QN    +A+  F  MLE G++P+  T+  AL ACT
Sbjct: 261 LFVQMP----EKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACT 316

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
            + +L+ G  IH YL  +   L   I T+LVDMYAKCGNI  A RVF  +  K+L  ++ 
Sbjct: 317 KIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSV 376

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           MI G+A+HG   +AL  F  ++  GI+PD + F  IL ACSH+G V++GL  F  M  D+
Sbjct: 377 MIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDY 436

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            ++P+M+H+  +V+LL R G LDEAL  I +MP +PD  I G+L   C      E+AE  
Sbjct: 437 SIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELT 496

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           +E LLQLEP +PG+YV LSN YAA GRW +V +VR +MK +G+ K+PG S+I++  ++H 
Sbjct: 497 AEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHS 556

Query: 755 FVACDRSHPKTEEIYATL 772
           FVA D +H + EEI   L
Sbjct: 557 FVAGDHAHVRAEEISLKL 574



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 193/448 (43%), Gaps = 94/448 (20%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
            QIHA+I  +  F   N  V T+L+       +LD A  +F      N+F + A+I    
Sbjct: 57  HQIHAQIFLHNLF--SNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLA 114

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
                E ++  FV M    + PD   LP VLK+  AL  VG GR +HG V+K+G +   F
Sbjct: 115 ENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSF 174

Query: 219 VASSLIDMY-----------------------------------GKCGDLEEARKVFDGM 243
           V  SL+DMY                                    K GDL +A  +F+ M
Sbjct: 175 VRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAM 234

Query: 244 IARNVVAWNSMIVGYV-------------------------------QNGLNEEAIRVFY 272
             RN  +WNS+I G+V                               QNG +E+A+ +F+
Sbjct: 235 PERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFW 294

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
            M  EGV P  ++V S L A   + AL  G++ H     NG +L+  +G+++++ Y+K G
Sbjct: 295 RMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCG 354

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
            ++ A  VF     +D++TW+++I  +   G                C   D A Q F  
Sbjct: 355 NIKSASRVFVETKGKDLLTWSVMIWGWAIHG----------------C--FDQALQCFVK 396

Query: 393 I----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNG 447
           +    I  D V++  +L A +  G   +    F  M+L+  I P +  +  ++    R G
Sbjct: 397 MKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAG 456

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           +++EA      +QS+ + P+ + W  L 
Sbjct: 457 RLDEALSF---IQSMPINPDFVIWGALF 481



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 141/303 (46%), Gaps = 18/303 (5%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
            + L  E   RN      ++  L+ GC    D+     +   + +      RN      L
Sbjct: 192 GLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPE------RNAGSWNSL 245

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  + +   LD A  LF ++  KNV SW  +I    + G  EKAL  F  M E+GV P++
Sbjct: 246 INGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPND 305

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
             + + L AC  +G +  G  +H Y+   GF     + ++L+DMY KCG+++ A +VF  
Sbjct: 306 LTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVE 365

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
              ++++ W+ MI G+  +G  ++A++ F +M   G+ P  V   +IL+A ++   +D+G
Sbjct: 366 TKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQG 425

Query: 303 KQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDAEVVFSRM-VERDIVTWNLL 355
                +     M LD  +  +      I++   + G L++A      M +  D V W  L
Sbjct: 426 -----LNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGAL 480

Query: 356 IAS 358
             +
Sbjct: 481 FCA 483


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 184/570 (32%), Positives = 327/570 (57%), Gaps = 30/570 (5%)

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
            G + +AR++FD    R+VV+W +++  Y   G+  +A  +F            V+ T++
Sbjct: 48  AGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDR---PDARRNVVTWTAL 104

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERD 348
           LS  A    +DE     A A+   M   NV+  ++++  Y+  G + DA  +F+ M  RD
Sbjct: 105 LSGYARAGRVDE-----AEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRD 159

Query: 349 IVTWNLLIASYVQSGQSD-------------VVVASSIVDMYAKCERIDNAKQVFNSIIL 395
             +WN+L+A+ V+SG  D             V+  +++V   A+   ++ A+ +F+ +  
Sbjct: 160 AGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPE 219

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
           R+VV WN +++ YA      EA  LF +M     + +I SWN +I GF++N  +  A+++
Sbjct: 220 RNVVSWNAMISGYARNHMIDEAHDLFMKMP----TRDIASWNIMITGFIQNKNLERAQEL 275

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +M     + N++TWTT+++G  Q+     A+  F  ML  GI+P+  T   A+ AC++
Sbjct: 276 FDKMP----RRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSN 331

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +A L  G+ +H  + +      T I ++L+++YAKCG I  A++VF++S  K++  +N M
Sbjct: 332 LAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGM 391

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I+ YA HG+ +EA+ L++ +Q+ G  P+ +T+  +L+ACSH+GLV+EGL +F  M  D  
Sbjct: 392 IAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRS 451

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           +    EH+ C+++L SR G L +A R+I  +  +P + +  +LL  C       + +  +
Sbjct: 452 IAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAA 511

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
            +LL+ EP+N G Y  L N YA++G+W E +++R  M ++GL+K PGCSWI++  ++HVF
Sbjct: 512 RNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVANKVHVF 571

Query: 756 VACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           V+ D+SH +++ I + L  +   +R+   V
Sbjct: 572 VSRDKSHSESDLINSLLQDIHDIMRMADTV 601



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 122/531 (22%), Positives = 246/531 (46%), Gaps = 79/531 (14%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGL--SEKALIGFVEMQEDGVSPDNFVLPNVLKAC 192
           A RLF R   ++V SW A++      G+    +AL    + + + V+        +L   
Sbjct: 54  ARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDRPDARRNVVT-----WTALLSGY 108

Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
              G V    A+ G + +      V   +++++ Y   G + +A  +F+GM  R+  +WN
Sbjct: 109 ARAGRVDEAEALFGRMPERN----VVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWN 164

Query: 253 SMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN 312
            ++   V++G  ++A ++F  M    V    ++ T++++  A   +++E +     A+ +
Sbjct: 165 ILLAALVRSGNIDKARKLFDRMPERNV----MAWTTMVAGIARSGSVNEAR-----ALFD 215

Query: 313 GMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVAS 371
           GM   NV+  +++I+ Y++  ++++A  +F +M  RDI +WN++I  ++Q+         
Sbjct: 216 GMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQN--------- 266

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
                    + ++ A+++F+ +  R+VV W T++  Y    +S  A +LF  M ++GI P
Sbjct: 267 ---------KNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRP 317

Query: 432 NIISWNSVI-----LGFLRNGQMNEAK--------DMFLQMQ------------------ 460
           N +++   +     L  L  GQ             D F++                    
Sbjct: 318 NQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVF 377

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
           +L  + ++I+W  +I+    +  G EAI  +++M E G KP+  T    LSAC+    + 
Sbjct: 378 NLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVD 437

Query: 521 NGRAIHGYLIR-HDLCLPTPIVTSLVDMYAKCGNIHQAKRV---FDISPSKELPVYNAMI 576
            G  I  Y+++   + +     T L+D+ ++ G +  AKR+     + PS    V+NA++
Sbjct: 438 EGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSS--TVWNALL 495

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSI-TFTNILNACSHAGLVNEGLEL 626
            G   HG         +NL +   +P++  T+T + N  + AG   E  ++
Sbjct: 496 GGCNSHGNESIGDLAARNLLEA--EPNNAGTYTLLCNIYASAGKWKEAAKI 544



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 187/447 (41%), Gaps = 74/447 (16%)

Query: 103 ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL 162
           AR L +     RN    T L+  YA+   +D A  LF R+  +NV SW  ++      G 
Sbjct: 85  ARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGR 144

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
              A   F  M        N +L  ++++    G +   R +   + +      V   ++
Sbjct: 145 VGDACTLFNGMPVRDAGSWNILLAALVRS----GNIDKARKLFDRMPERN----VMAWTT 196

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           ++    + G + EAR +FDGM  RNVV+WN+MI GY +N + +EA  +F +M      PT
Sbjct: 197 MVAGIARSGSVNEARALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKM------PT 250

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
           R        AS N+                           +I  + +   LE A+ +F 
Sbjct: 251 RD------IASWNI---------------------------MITGFIQNKNLERAQELFD 277

Query: 343 RMVERDIVTWNLLIASYVQSGQSDV-----------------VVASSIVDMYAKCERIDN 385
           +M  R++VTW  ++  Y+QS QS+                  V     VD  +    +  
Sbjct: 278 KMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSE 337

Query: 386 AKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +QV   I       D  + +TL+  YA  G    A ++F   +      ++ISWN +I 
Sbjct: 338 GQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSK----EKDVISWNGMIA 393

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIK 500
            +  +G   EA  ++ +MQ  G +PN +T+  L+S  + +   +E +  F+ M+ +  I 
Sbjct: 394 AYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIA 453

Query: 501 PSTTTITCALSACTDVASLRNG-RAIH 526
                 TC +  C+    L +  R IH
Sbjct: 454 VRDEHYTCLIDLCSRAGRLGDAKRLIH 480



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 124/248 (50%), Gaps = 2/248 (0%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++  + +   L+ A  LF ++  +NV +W  ++    +   SE AL  F  M  DG+ P+
Sbjct: 259 MITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPN 318

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
                  + AC  L  +  G+ VH  + K  F    F+ S+L+++Y KCG++  ARKVF+
Sbjct: 319 QVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFN 378

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
               ++V++WN MI  Y  +G+  EAI ++ +M   G +P  V+   +LSA ++   +DE
Sbjct: 379 LSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDE 438

Query: 302 GKQAHAVAVIN-GMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASY 359
           G +     V +  + + +   + +I+  S+ G L DA+ +   + VE     WN L+   
Sbjct: 439 GLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGC 498

Query: 360 VQSGQSDV 367
              G   +
Sbjct: 499 NSHGNESI 506



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 189/436 (43%), Gaps = 60/436 (13%)

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           A   R+ +A+++F+    RDVV W  L+AAYA  G   +A  LF +        N+++W 
Sbjct: 46  AAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDRPDAR---RNVVTWT 102

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           +++ G+ R G+++EA+ +F +M     + N+++W T++   T +    +A   F  M   
Sbjct: 103 ALLSGYARAGRVDEAEALFGRMP----ERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVR 158

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
                  +    L+A     ++   R +   +   ++   T +V  +    A+ G++++A
Sbjct: 159 ----DAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGI----ARSGSVNEA 210

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALF---------------------KNLQ 596
           + +FD  P + +  +NAMISGYA + +  EA  LF                     KNL+
Sbjct: 211 RALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLE 270

Query: 597 Q------KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           +      K    + +T+T ++N    +      L+LF GM  D  ++P+   F   V+  
Sbjct: 271 RAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLID-GIRPNQVTFLGAVDAC 329

Query: 651 SRCGNLDEALRV---ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707
           S    L E  +V   I   P   D  I  +L++   K  E  LA  +    L  E D   
Sbjct: 330 SNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFN--LSKEKDVI- 386

Query: 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN--------PGCS---WIQIGEELHVFV 756
           ++  +  AYA  G   E   + + M+E G + N          CS    +  G  +  ++
Sbjct: 387 SWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYM 446

Query: 757 ACDRSHPKTEEIYATL 772
             DRS    +E Y  L
Sbjct: 447 VKDRSIAVRDEHYTCL 462



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 122/276 (44%), Gaps = 20/276 (7%)

Query: 21  KPLKLSQTHLTKL-RESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGP 79
           K L+ +Q    K+ R +  ++ ++   Y   I S +       A+ L   M     +   
Sbjct: 267 KNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSET-------ALQLFNGMLIDGIRPNQ 319

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
             +   +  C     +  GQQ+H  I K    F  + ++E+ L+  YAKC  + +A ++F
Sbjct: 320 VTFLGAVDACSNLAGLSEGQQVHQMICKTP--FQFDTFIESTLMNLYAKCGEIILARKVF 377

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
              + K+V SW  +I      G+  +A+  + +MQE+G  P++     +L AC   G V 
Sbjct: 378 NLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVD 437

Query: 200 FGRAVHGYVLKVGFDGCVFVA----SSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSM 254
            G  +  Y++K   D  + V     + LID+  + G L +A+++   + +  +   WN++
Sbjct: 438 EGLRIFEYMVK---DRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNAL 494

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           + G   +G   E+I       L   EP      ++L
Sbjct: 495 LGGCNSHG--NESIGDLAARNLLEAEPNNAGTYTLL 528


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 215/640 (33%), Positives = 328/640 (51%), Gaps = 69/640 (10%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
            RA H  +LK    G  F+ ++L+  Y + G L +AR+VFD +  RN  ++N+++  Y +
Sbjct: 36  ARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYAR 95

Query: 261 NGLNEEA---------------------------------IRVFYEMTLEGVEPTRVSVT 287
            G  +EA                                 +R    M  +       S  
Sbjct: 96  LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFA 155

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S LSA A       G+Q H +   +    D  + S++++ Y+K    EDA  VF  M ER
Sbjct: 156 SALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPER 215

Query: 348 DIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVF 390
           ++V+WN LI  Y Q+G                   D V  SS++   A        +QV 
Sbjct: 216 NVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVH 275

Query: 391 NSII----LRD-VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
             ++    LRD +VL N L+  YA  GR+ EA  +F  M     S +I+S  S++ G+ +
Sbjct: 276 AHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP----SRSIVSETSILTGYAK 331

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
           +  + +A+ +F QM    V+ N+I W  LI+   QN    EAI  F ++    I P+  T
Sbjct: 332 SANVEDAQVVFSQM----VEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYT 387

Query: 506 ITCALSACTDVASLRNGRAIHGYLI----RHDLCLPTPIV--TSLVDMYAKCGNIHQAKR 559
               L+AC ++A L+ G+  H +++    R D    + +    SLVDMY K G+I    +
Sbjct: 388 YGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAK 447

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VF+   +++   +NAMI GYA +G A +AL LF+ +     +PDS+T   +L+AC H+GL
Sbjct: 448 VFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGL 507

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           V+EG   F  M  DH + PS +H+ C+V+LL R G+L EA  +I  MP +PD+ +  SLL
Sbjct: 508 VDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLL 567

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
             C      EL E+ +  L +L+P N G YV LSN YA  G+W EV +VR  MK++G+ K
Sbjct: 568 GACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSK 627

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
            PGCSWI+IG +++VF+A D+ HP   EI+ TL ++ M +
Sbjct: 628 QPGCSWIEIGRKMNVFLARDKRHPCRNEIHNTLRIIQMEM 667



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 230/474 (48%), Gaps = 66/474 (13%)

Query: 46  SYFHQISSLSKEKQ--IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHA 103
           SY   +++L++  +    +A+  L  M   +F +    +   L  C  ++D  TG+Q+H 
Sbjct: 116 SYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHG 175

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
            + ++    A + ++ + LV  YAKC+  + A R+F  +  +NV SW ++I    + G  
Sbjct: 176 LVARSP--HADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPV 233

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVFVASS 222
            +AL+ FVEM   G SPD   L +V+ AC  L     GR VH +++K       + + ++
Sbjct: 234 GEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNA 293

Query: 223 LIDMYGKCGDLEEARKVFDGMIAR-------------------------------NVVAW 251
           L+DMY KCG   EAR +FD M +R                               NV+AW
Sbjct: 294 LVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAW 353

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N +I  Y QNG  EEAIR+F ++  + + PT  +  ++L+A  N+  L  G+QAH   + 
Sbjct: 354 NVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLK 413

Query: 312 NGM------ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
            G       E D  +G+S+++ Y K G ++D   VF RM  RD V+WN +I  Y Q+G++
Sbjct: 414 EGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRA 473

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG---EASRLFY 422
                    D     ER+  + +  +S+         T++   +  G SG   E  R F+
Sbjct: 474 K--------DALHLFERMLCSNENPDSV---------TMIGVLSACGHSGLVDEGRRYFH 516

Query: 423 QM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            M +  GI+P+   +  ++    R G + EA+++   M    ++P+ + W +L+
Sbjct: 517 SMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMP---MEPDSVLWASLL 567



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 151/538 (28%), Positives = 247/538 (45%), Gaps = 96/538 (17%)

Query: 102 HARILKN---GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           HARILK+   G+ F  N  V T     YA+   L  A R+F  + ++N FS+ A++    
Sbjct: 40  HARILKSPVAGETFLLNTLVST-----YARLGRLRDARRVFDEIPLRNTFSYNALLSAYA 94

Query: 159 RVGLSEKALIGFVEMQED----------------------------GVSPDNFVL----- 185
           R+G  ++A   F  + +                              +  D+FVL     
Sbjct: 95  RLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSF 154

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
            + L AC A      G  VHG V +      V + S+L+DMY KC   E+AR+VFD M  
Sbjct: 155 ASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPE 214

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           RNVV+WNS+I  Y QNG   EA+ +F EM   G  P  V+++S++SA A L A  EG+Q 
Sbjct: 215 RNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQV 274

Query: 306 HAVAV-INGMELDNVLGSSIINFYSKVGL------------------------------- 333
           HA  V  + +  D VL +++++ Y+K G                                
Sbjct: 275 HAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSAN 334

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           +EDA+VVFS+MVE++++ WN+LIA+Y Q+G+ +       + ++ + +R        +SI
Sbjct: 335 VEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEE-----EAIRLFVQLKR--------DSI 381

Query: 394 ILRDVVLWNTLLA----AYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQ 448
                   N L A    A   LG+      L    + + G   ++   NS++  +L+ G 
Sbjct: 382 WPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGS 441

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           +++   +F +M +     + ++W  +I G  QN    +A+  F+ ML +   P + T+  
Sbjct: 442 IDDGAKVFERMAAR----DNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIG 497

Query: 509 ALSACTDVASLRNGRA-IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
            LSAC     +  GR   H     H +       T +VD+  + G++ +A+ + +  P
Sbjct: 498 VLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMP 555



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 169/346 (48%), Gaps = 38/346 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           I+   +   + EA+ L  EM    F         ++  C        G+Q+HA ++K   
Sbjct: 224 ITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDR 283

Query: 110 ------------DFFA-----------------RNEYVETKLVVFYAKCDALDVASRLFC 140
                       D +A                 R+   ET ++  YAK   ++ A  +F 
Sbjct: 284 LRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFS 343

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
           ++  KNV +W  +I    + G  E+A+  FV+++ D + P ++   NVL ACG +  +  
Sbjct: 344 QMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQL 403

Query: 201 GRAVHGYVLKVGF------DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           G+  H +VLK GF      +  VFV +SL+DMY K G +++  KVF+ M AR+ V+WN+M
Sbjct: 404 GQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAM 463

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVING 313
           IVGY QNG  ++A+ +F  M      P  V++  +LSA  +   +DEG++  H++   +G
Sbjct: 464 IVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHG 523

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
           +       + +++   + G L++AE + + M +E D V W  L+ +
Sbjct: 524 ITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGA 569



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 102/254 (40%), Gaps = 59/254 (23%)

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           +L   RA H  +++  +   T ++ +LV  YA+ G +  A+RVFD  P +    YNA++S
Sbjct: 32  NLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLS 91

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
            YA  G   EA ALF+ +     DPD  ++  ++ A +  G                   
Sbjct: 92  AYARLGRPDEARALFEAIP----DPDQCSYNAVVAALARHGR------------------ 129

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP---DAHIIGSLLSTCVKSNETELAEYI 694
                           G+  +ALR +  M  D    +A+   S LS C    ++   E +
Sbjct: 130 ----------------GHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQV 173

Query: 695 SEHLLQLEP--DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ----- 747
              L+   P  D+     AL + YA   R  +  +V D M E+ +      SW       
Sbjct: 174 -HGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNV-----VSWNSLITCY 227

Query: 748 -----IGEELHVFV 756
                +GE L +FV
Sbjct: 228 EQNGPVGEALMLFV 241


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 208/683 (30%), Positives = 339/683 (49%), Gaps = 92/683 (13%)

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL--KVGFDGCVFVASSLIDMYGKCG 231
            +D ++P    L ++L+ C     +  GR  H  +L   +G++G   + + L+ MY  CG
Sbjct: 41  NDDSLAPQ---LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNG--ILGTKLLGMYVLCG 95

Query: 232 DLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
              +A+ +F  +       WN MI G+   G  + A+  +++M   G  P + +   ++ 
Sbjct: 96  AFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIK 155

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           A   L+++  G+  H      G ELD  +GSS+I FYS+ G + DA  +F RM  +D V 
Sbjct: 156 ACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVL 215

Query: 352 WNLLIASYVQSGQSD------------------------------------------VVV 369
           WN+++  YV++G  D                                          +VV
Sbjct: 216 WNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVV 275

Query: 370 AS------------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
           +S            +++D+Y KC  ++ A+++F+     D+V+   +++ Y   G +  A
Sbjct: 276 SSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNA 335

Query: 418 SRLFYQMQLEGISPNIISWNSVI----------LG------FLRNGQMNEA------KDM 455
             +F  +  E +  N ++  SV+          LG       L+NG            DM
Sbjct: 336 LEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDM 395

Query: 456 FLQMQSLGV---------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           + +   L +           + + W ++I+  +QN    EAI  F++M   G K    +I
Sbjct: 396 YAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSI 455

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
           + ALSAC ++ +L  G+ IH +++R          ++L+DMY+KCGN+  A RVFD    
Sbjct: 456 SAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEE 515

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           K    +N++I+ Y  HG   ++L LF  +   GI PD +TF  I++AC HAG V+EG+  
Sbjct: 516 KNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHY 575

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  M  +  +   MEH+ C+V+L  R G L+EA  +I +MP  PDA + G+LL  C    
Sbjct: 576 FRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHG 635

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
             ELAE  S +L  L+P N G YV LSN +A +G+W  V ++R +MKE+G++K PGCSWI
Sbjct: 636 NVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWI 695

Query: 747 QIGEELHVFVACDRSHPKTEEIY 769
            +    H+FVA DRSHP++ +IY
Sbjct: 696 DVNNTTHMFVAADRSHPQSSQIY 718



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 167/632 (26%), Positives = 286/632 (45%), Gaps = 97/632 (15%)

Query: 77  IGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVAS 136
           + P++   +LQ C     +  G+Q HA++L NG     N  + TKL+  Y  C A   A 
Sbjct: 45  LAPQLV-SILQTCTDPSGLSQGRQAHAQMLVNG--IGYNGILGTKLLGMYVLCGAFLDAK 101

Query: 137 RLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
            +F +LR+     W  +I     +G  + AL+ + +M   G  PD +  P V+KACG L 
Sbjct: 102 NIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLN 161

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
            V  GR VH  +  +GF+  VFV SSLI  Y + G + +AR +FD M +++ V WN M+ 
Sbjct: 162 SVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLN 221

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           GYV+NG  + A  VF EM      P  V+   +LS  A+   ++ G Q H + V +G+E+
Sbjct: 222 GYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEM 281

Query: 317 DNVLGSS--IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD-------- 366
           D+ + ++  +I+ Y K   +E A  +F +    DIV    +I+ YV +G ++        
Sbjct: 282 DSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRW 341

Query: 367 --------------------------------------------VVVASSIVDMYAKCER 382
                                                         V S+I+DMYAKC R
Sbjct: 342 LLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGR 401

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS---- 438
           +D A Q F  I  +D V WN+++ + +  G+  EA  LF QM + G   + +S ++    
Sbjct: 402 LDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSA 461

Query: 439 ----------------VILGFLRNGQMNEAK--DMFLQMQSLGV---------QPNLITW 471
                           ++ G  R+    E+   DM+ +  +L +         + N ++W
Sbjct: 462 CANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSW 521

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY-LI 530
            ++I+    +    +++  F  ML  GI+P   T    +SAC     +  G  IH +  +
Sbjct: 522 NSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEG--IHYFRCM 579

Query: 531 RHDLCLPTPI--VTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVE 587
             +L +   +     +VD++ + G +++A  + +  P S +  V+  ++    +HG    
Sbjct: 580 TEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVEL 639

Query: 588 ALALFKNLQQKGIDPDSITFTNIL-NACSHAG 618
           A    +NL    +DP +  +  +L N  ++AG
Sbjct: 640 AEVASRNLFD--LDPQNSGYYVLLSNVHANAG 669



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 207/428 (48%), Gaps = 32/428 (7%)

Query: 56  KEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG---DFF 112
           K      A  +  EM+          +  +L  C  +  +  G Q+H  ++ +G   D  
Sbjct: 225 KNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSP 284

Query: 113 ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
             N +    L+  Y KC  +++A ++F +    ++    A+I      G++  AL  F  
Sbjct: 285 VANTFA---LIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRW 341

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           + ++ +  ++  L +VL AC  L  +  G+ +HG++LK G  G  +V S+++DMY KCG 
Sbjct: 342 LLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGR 401

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L+ A + F G+  ++ V WNSMI    QNG  EEAI +F +M + G +   VS+++ LSA
Sbjct: 402 LDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSA 461

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            ANL AL  GK+ HA  +      D    S++I+ YSK G L+ A  VF  M E++ V+W
Sbjct: 462 CANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSW 521

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLAAY 408
           N +IA+Y   G                  R+ ++  +F+ +    I  D V +  +++A 
Sbjct: 522 NSIIAAYGNHG------------------RLKDSLNLFHGMLGDGIQPDHVTFLAIISAC 563

Query: 409 ADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
              G+  E    F  M  E GI   +  +  ++  F R G++NEA   F  + S+   P+
Sbjct: 564 GHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEA---FGMINSMPFSPD 620

Query: 468 LITWTTLI 475
              W TL+
Sbjct: 621 AGVWGTLL 628


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  345 bits (886), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 203/577 (35%), Positives = 301/577 (52%), Gaps = 64/577 (11%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCG-----DLEEARKVFDGMIARNVVAWNSMIV 256
           +  H  +L+ G     ++A SL+  Y           E + +VFD +   NV  WN MI 
Sbjct: 51  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
             ++N    +AI ++YEM +    P + +  ++L A ++   + EG Q HA  V +G+  
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 170

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
           D  + SS I  Y+           F R+VE                       A  I+D 
Sbjct: 171 DGHILSSAIRMYAS----------FGRLVE-----------------------ARRILD- 196

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
                  D   +V       D V WN ++  Y   G    A  LF  M    +   I +W
Sbjct: 197 -------DKGGEV-------DAVCWNAMIDGYLRFGEVEAARELFEGMPDRSM---ISTW 239

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           N++I GF R G +  A++ F +M+    + + I+W+ +I G  Q  C  EA+  F +M +
Sbjct: 240 NAMISGFSRCGMVEVAREFFDEMK----ERDEISWSAMIDGYIQEGCFMEALEIFHQMQK 295

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
             I+P    +   LSAC ++ +L  GR IH Y  R+ + L   + TSLVDMYAKCG I  
Sbjct: 296 EKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDL 355

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A  VF+   +KE+  +NAMI G AMHG A +A+ LF  +    I+P+ ITF  +LNAC+H
Sbjct: 356 AWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAH 412

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            GLV +GL +F  M  ++ V+P +EH+GC+V+LL R G L EA +V+ ++P +P   + G
Sbjct: 413 GGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWG 472

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +LL  C K    EL E + + LL+LEP N G Y  LSN YA +GRW EV +VR +MKE+G
Sbjct: 473 ALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERG 532

Query: 737 LRKNPGCSWIQIGE-ELHVFVACDRSHPKTEEIYATL 772
           ++  PG S I +G  E+H F+  D SHP+ ++IY  L
Sbjct: 533 IKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQML 569



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 202/453 (44%), Gaps = 92/453 (20%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCD-----ALDVASRLFCRLRVKNVFSWAAI 153
           +Q HA IL+ G    ++ Y+   LV  YA        + + + R+F  +R  NVF W  +
Sbjct: 51  KQAHALILRTGHL--QDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCM 108

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I +        KA++ + EM      P+ +  P VLKAC   G V  G  VH +++K G 
Sbjct: 109 IKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGL 168

Query: 214 DGCVFVASSLIDMYG--------------------------------KCGDLEEARKVFD 241
            G   + SS I MY                                 + G++E AR++F+
Sbjct: 169 GGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFE 228

Query: 242 GMIARNVVA-WNSMIV-------------------------------GYVQNGLNEEAIR 269
           GM  R++++ WN+MI                                GY+Q G   EA+ 
Sbjct: 229 GMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALE 288

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329
           +F++M  E + P +  + S+LSA ANL ALD+G+  H  A  N ++LD VLG+S+++ Y+
Sbjct: 289 IFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYA 348

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQV 389
           K G ++ A  VF +M  +++ +WN +I      G+     A   +D+++K +        
Sbjct: 349 KCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGR-----AEDAIDLFSKMD-------- 395

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQ 448
               I  + + +  +L A A  G   +   +F  M+ E G+ P I  +  ++    R G 
Sbjct: 396 ----INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGL 451

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
           + EA+ +   + S+  +P    W  L+    ++
Sbjct: 452 LTEAEKV---VSSIPTEPTPAVWGALLGACRKH 481



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 169/356 (47%), Gaps = 58/356 (16%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++  +++C  ++VA   F  ++ ++  SW+A+I    + G   +AL  F +MQ++ + P 
Sbjct: 242 MISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPR 301

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSLIDMYGKCGDLEEARKV 239
            FVLP+VL AC  LG +  GR +H Y  +  +  DG +   +SL+DMY KCG ++ A +V
Sbjct: 302 KFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVL--GTSLVDMYAKCGRIDLAWEV 359

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F+ M  + V +WN+MI G   +G  E+AI +F +M    + P  ++   +L+A A+   +
Sbjct: 360 FEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLV 416

Query: 300 DEGKQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDAEVVFSRM-VERDIVTW 352
            +G     + + N M  +  +         I++   + GLL +AE V S +  E     W
Sbjct: 417 QKG-----LTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVW 471

Query: 353 NLLIASYVQSGQSDV--VVASSIVDM--------------YAKCERIDNAKQVFNSIILR 396
             L+ +  + G  ++   V   ++++              YAK  R +   +V    +++
Sbjct: 472 GALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRK--LMK 529

Query: 397 DVVLWNTLLAAYADLGRSGEASRL------------FYQM--------QLEGISPN 432
           +  +  T   +  DLGR GE  +              YQM        Q+EG  P+
Sbjct: 530 ERGIKTTPGTSIIDLGR-GEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPD 584


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  345 bits (886), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 209/680 (30%), Positives = 360/680 (52%), Gaps = 30/680 (4%)

Query: 120 TKLVVFYAK--CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177
           T L+  YAK     +  A  +F  +R +N  SW+ ++    RVGL E+A+  F +M   G
Sbjct: 310 TSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLG 369

Query: 178 VSPDNFVLPNVLKACGALGWVG-FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           V P+ F++ +++ AC   G++   G  VHG+V+K G  G V+V ++L+  YG  G +  A
Sbjct: 370 VEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNA 429

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           +K+F+ M   NVV+W S++VGY  +G   E + V+  M  EGV   + +  ++ S+   L
Sbjct: 430 QKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLL 489

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
           +    G Q     +  G E    + +S+I+ +S    +E+A  VF  M E DI++WN +I
Sbjct: 490 EDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMI 549

Query: 357 ASYVQSGQ--------------SDVVVASSIVDMYAKCERIDNAK--QVFNSIILR---- 396
           ++Y   G                +   ++++  + + C  +DN K  +  + ++++    
Sbjct: 550 SAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLD 609

Query: 397 -DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
            +V + NTLL  Y++ GRS +A  +F  M       ++ISWNS++  ++++G+  +   +
Sbjct: 610 SNVCICNTLLTLYSEAGRSEDAELVFQAM----TERDLISWNSMMACYVQDGKCLDGLKI 665

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
             ++  +G +P+ +TW  LI G  +N   NEA+  ++ + E GI P+      +L+A  +
Sbjct: 666 LAELLQMG-KPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGI-PANYITMVSLAATAN 723

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +A L  G+ +HG +I+        +  + +DMY KCG +H   ++     ++    +N +
Sbjct: 724 LAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNIL 783

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           IS +A HG   +A   F  + + G  PD +TF ++L+AC+H GLV+EGL  +  M  +  
Sbjct: 784 ISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFG 843

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           V P +EH  C+++LL R G L  A   I  MP  P+     SLL+ C      ELA   +
Sbjct: 844 VFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTA 903

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           EHLL+L+P +   YV  SN  A SG+W +V  +R  M    ++K P CSW+++ +++H F
Sbjct: 904 EHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSF 963

Query: 756 VACDRSHPKTEEIYATLALL 775
              ++ HP+   I A L  L
Sbjct: 964 GMGEKYHPQASRISAKLGEL 983



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 155/628 (24%), Positives = 295/628 (46%), Gaps = 94/628 (14%)

Query: 48  FHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILK 107
           F +I S     ++ EA+ LL+    R   + P +Y ++LQ C+ K+    G  IH  ++ 
Sbjct: 2   FSKIQSACNLGRLAEALKLLSSNPTR---LDPSLYLKILQLCIDKKAKKQGHLIHTHLIT 58

Query: 108 NGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
           NG  F  + ++ TKL++FY K   +  A  +F  +  ++V SW A++    + G  EKA 
Sbjct: 59  NG--FGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAF 116

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
           + F +M+  GV  ++                                       +L+D +
Sbjct: 117 VLFSDMRHCGVKANH---------------------------------------ALVDFH 137

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            KCG +E+A  +F  M+ R+VV+WN+MI GY   G  +++  +F  M   G+ P   ++ 
Sbjct: 138 SKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLG 197

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S+L ASA    L    Q H +    G    +++   +IN Y+K G L  A+ +   M+++
Sbjct: 198 SVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKK 257

Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
           D+ +   LI  Y   G     + ++++DMYAK   I++AK+ F+ +  ++V+ W +L++ 
Sbjct: 258 DLFSSTALITGYAHEGI--YTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISG 315

Query: 408 YAD--LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
           YA    G    A  +F +M+      N  SW++++ G++R G   EA  +F QM  LGV+
Sbjct: 316 YAKHGYGHMAHARYVFDEMR----HRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 371

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN-GRA 524
           PN     +LI                                   +AC+    + + G  
Sbjct: 372 PNGFMVASLI-----------------------------------TACSRSGYMADEGFQ 396

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           +HG++++  +     + T+LV  Y   G ++ A+++F+  P   +  + +++ GY+  G 
Sbjct: 397 VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN 456

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF--VGMFSDHQVKPSMEH 642
             E L +++ ++Q+G+  +  TF  + ++C   GL+ + +  +  +G    +  + S+  
Sbjct: 457 PGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQYGFEDSVSV 513

Query: 643 FGCVVNLLSRCGNLDEALRVILTM-PCD 669
              ++++ S   +++EA  V   M  CD
Sbjct: 514 ANSLISMFSSFSSVEEACYVFDHMNECD 541



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 164/600 (27%), Positives = 273/600 (45%), Gaps = 71/600 (11%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYT---GQQIHARILKNGDFFARNEYV 118
           EAV L  +M     +    +   L+  C   R  Y    G Q+H  ++K G     + YV
Sbjct: 357 EAVGLFCQMWGLGVEPNGFMVASLITAC--SRSGYMADEGFQVHGFVVKTG--ILGDVYV 412

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
            T LV FY     +  A +LF  +   NV SW +++      G   + L  +  M+++GV
Sbjct: 413 GTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGV 472

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           S +      V  +CG L     G  V G++++ GF+  V VA+SLI M+     +EEA  
Sbjct: 473 SGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACY 532

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VFD M   ++++WN+MI  Y  +GL  E++R F+ M     E    +++S+LS  +++D 
Sbjct: 533 VFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDN 592

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           L  G+  H + V  G++ +  + ++++  YS+ G  EDAE+VF  M ERD+++WN ++A 
Sbjct: 593 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 652

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR--DVVLWNTLLAAYADLGRSGE 416
           YVQ G               KC  +D  K +   + +   D V WN L+  +A+     E
Sbjct: 653 YVQDG---------------KC--LDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNE 695

Query: 417 ASRLFYQMQLEGISPNIISWNSVI----LGFLRNGQM-----------------NEAKDM 455
           A + +  ++ +GI  N I+  S+     L  L  GQ                  N A DM
Sbjct: 696 AVKAYKLIREKGIPANYITMVSLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDM 755

Query: 456 F---------LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           +         L+M    +  + ++W  LIS   ++ C  +A   F EML+ G KP   T 
Sbjct: 756 YGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTF 815

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLP-TPIVTSLVDMYAKCGNIHQAKRVFDISP 565
              LSAC     +  G A +  + R     P       ++D+  + G +  A+       
Sbjct: 816 VSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFI---- 871

Query: 566 SKELPV------YNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAG 618
            KE+PV      + ++++   +HG    A    ++L +  +DP D   +    N C+ +G
Sbjct: 872 -KEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLE--LDPSDDSAYVLYSNVCATSG 928


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  345 bits (885), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 199/586 (33%), Positives = 313/586 (53%), Gaps = 30/586 (5%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +H  VLK      +FVA  LI  +  C  L  A  VF+ +   NV  +NS+I  +  N  
Sbjct: 40  IHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNTS 99

Query: 264 NEE-AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
           +       F++M   G+ P   +   +L A     +L   +  HA     G   D  + +
Sbjct: 100 HPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPN 159

Query: 323 SIINFYSKVGL--LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           S+I+ YS+ G   L+ A  +F  M ERD+VTWN +I   V                  +C
Sbjct: 160 SLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLV------------------RC 201

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             ++ A ++F+ +  RD+V WNT+L  YA  G    A  LF +M       NI+SW++++
Sbjct: 202 GELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQR----NIVSWSTMV 257

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
            G+ + G M+ A+ +F +  +     N++ WTT+I+G  +     EA   + +M E G++
Sbjct: 258 CGYSKGGDMDMARVLFDRCPA----KNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLR 313

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P    +   L+AC +   L  G+ IH  + R      T ++ + +DMYAKCG +  A  V
Sbjct: 314 PDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDV 373

Query: 561 FD-ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           F  +   K++  +N+MI G+AMHG   +AL LF  +  +G +PD+ TF  +L AC+HAGL
Sbjct: 374 FSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGL 433

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           VNEG + F  M   + + P +EH+GC+++LL R G+L EA  ++ +MP +P+A I+G+LL
Sbjct: 434 VNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLL 493

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           + C   N+ + A  + E L ++EP +PGNY  LSN YA +G W  V+ VR  M   G +K
Sbjct: 494 NACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQK 553

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
             G S I++ EE+H F   D+SHPK+++IY  +  L   +R V  V
Sbjct: 554 PSGASSIEVEEEVHEFTVFDQSHPKSDDIYKMIDRLVQDLRQVGYV 599



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 153/606 (25%), Positives = 259/606 (42%), Gaps = 137/606 (22%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           QIHA++LK      ++ +V  KL+  ++ C  L  A  +F  +   NV  + +II  +  
Sbjct: 39  QIHAQVLKAN--LHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAH 96

Query: 160 VGLSEKALI--GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
              S  +L    F +MQ++G+ PDNF  P +LKAC     +   R +H +V K GF G +
Sbjct: 97  -NTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDI 155

Query: 218 FVASSLIDMYGKCGD--LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
           FV +SLID Y +CG   L+ A  +F  M  R+VV WNSMI G V+ G  E A ++F EM 
Sbjct: 156 FVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMP 215

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
                                                  E D V  +++++ Y+K G ++
Sbjct: 216 ---------------------------------------ERDMVSWNTMLDGYAKAGEMD 236

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
            A  +F RM +R+IV+W+ ++  Y + G  D+                  A+ +F+    
Sbjct: 237 RAFELFERMPQRNIVSWSTMVCGYSKGGDMDM------------------ARVLFDRCPA 278

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN---IIS----------------- 435
           ++VVLW T++A YA+ G   EA+ L+ +M+  G+ P+   +IS                 
Sbjct: 279 KNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRI 338

Query: 436 ------W---------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
                 W         N+ I  + + G ++ A D+F  M +   + ++++W ++I G   
Sbjct: 339 HASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMA---KKDVVSWNSMIQGFAM 395

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
           +  G +A+  F  M+  G +P T T    L ACT    +  GR                 
Sbjct: 396 HGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKY--------------- 440

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
                         +  ++V+ I P  E   Y  M+      G   EA  L +++    +
Sbjct: 441 -------------FYSMEKVYGIVPQVEH--YGCMMDLLGRGGHLKEAFTLLRSMP---M 482

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
           +P++I    +LNAC     V+    +   +F      P   ++  + N+ ++ G+     
Sbjct: 483 EPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPG--NYSLLSNIYAQAGDWMNVA 540

Query: 661 RVILTM 666
            V L M
Sbjct: 541 NVRLQM 546



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 114/240 (47%), Gaps = 25/240 (10%)

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
           C L  C+++ S+     IH  +++ +L     +   L+  ++ C ++  A  VF+  P  
Sbjct: 26  CDLHKCSNLDSVNQ---IHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHP 82

Query: 568 ELPVYNAMISGYAMHGLAVEALAL--FKNLQQKGIDPDSITFTNILNACSHAG------L 619
            + +YN++I  +A H  +  +L    F  +Q+ G+ PD+ T+  +L AC+         +
Sbjct: 83  NVHLYNSIIRAHA-HNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRM 141

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN--LDEALRVILTMPCDPDAHIIGS 677
           ++  +E F G + D  V  S+      ++  SRCG+  LD A+ + L M  + D     S
Sbjct: 142 IHAHVEKF-GFYGDIFVPNSL------IDSYSRCGSAGLDGAMSLFLAMK-ERDVVTWNS 193

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           ++   V+  E E A  + +   ++   +  ++  + + YA +G  +   ++ + M ++ +
Sbjct: 194 MIGGLVRCGELEGACKLFD---EMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNI 250


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  345 bits (885), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 190/545 (34%), Positives = 322/545 (59%), Gaps = 33/545 (6%)

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  R+VV W ++I GY++ GL  +A R+F    ++ ++   V+ T++LS    L  ++E 
Sbjct: 1   MHERDVVTWTAVISGYIKCGLIVDARRLFDR--VDAIKDV-VTWTAMLSGYVRLKRIEEA 57

Query: 303 KQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           ++   V     M + NV+  +++I+ Y K   ++ A  VF RM ER++V+WN +IA+ VQ
Sbjct: 58  ERLFEV-----MPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQ 112

Query: 362 SG-------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
            G             + DV+  +++V   A+  R+D A++VF+ +  R+VV WN ++  Y
Sbjct: 113 CGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGY 172

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
           A   R  EA  LF +M       N+ SWN++I GF++NG++  A+ +F +M     + N+
Sbjct: 173 AKNMRLDEAFDLFERMP----ERNLSSWNTMITGFIQNGELAWARKVFNEMP----EKNV 224

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
           ++WTT+I+G  Q      A+  F EM+ + G +P+  T    L AC+D+A L  G+ +H 
Sbjct: 225 VSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHL 284

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD--ISPSKELPVYNAMISGYAMHGLA 585
            + +      T + ++L++MY+KCG +  A+++FD  +   ++L ++N MI+ YA HG  
Sbjct: 285 LISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCG 344

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
           +EA+ LF+++Q  G  P+ +++  +L+ACSHAGLV+EGL  F  +  D+ ++   +H  C
Sbjct: 345 MEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHAC 404

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           +V+L  R G L EA   I  +     + I G LL+ C    + E+ +  ++ L + +P+N
Sbjct: 405 LVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGDLEIGQLAAKELEKEDPEN 464

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
            G Y+ LSN YA+  +W E S+VR  MKEKGL+K PGCSWI++G  +HVF+A D+SH ++
Sbjct: 465 AGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCSWIEVGNRVHVFLARDKSHYQS 524

Query: 766 EEIYA 770
             IY+
Sbjct: 525 NLIYS 529



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 209/475 (44%), Gaps = 63/475 (13%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           T ++  Y +   ++ A RLF  + VKNV SW  +I    +    +KA+  F  M E  + 
Sbjct: 42  TAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMV 101

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
             N V+  +++ CG    V   R     + K      V   ++++    + G ++EARKV
Sbjct: 102 SWNAVIAALVQ-CGR---VEEARRRFDEMPKRD----VISWTTMVMGLARSGRVDEARKV 153

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD M  RNVV+WN+M+ GY +N   +EA  +F  M    +      +T  +         
Sbjct: 154 FDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQ-------- 205

Query: 300 DEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWN----- 353
             G+ A A  V N M   NV+  +++I  Y + G  E A  VF  M++      N     
Sbjct: 206 -NGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFV 264

Query: 354 -------------------LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
                              LLI+  V   Q    VAS++++MY+KC  +  A+++F+ ++
Sbjct: 265 NVLGACSDMAGLGEGQQVHLLISKSVY--QDRTFVASALLNMYSKCGELSIARKIFDDVV 322

Query: 395 L--RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
           +  RD+VLWN ++AAYA  G   EA  LF  MQ  G  PN +S+  ++      G ++E 
Sbjct: 323 ISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEG 382

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCG-----NEAILFFQEMLETGIKPSTTTIT 507
            + F     LG + N I           + CG      EA  F +++   G K S++   
Sbjct: 383 LNYF---DELG-RDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQL---GTKASSSIWG 435

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV--DMYAKCGNIHQAKRV 560
             L+ C     L  G+     L + D   P    T L+  ++YA      +A RV
Sbjct: 436 GLLAGCNAHGDLEIGQLAAKELEKED---PENAGTYLLLSNIYASGRKWREASRV 487



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 152/318 (47%), Gaps = 26/318 (8%)

Query: 32  KLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQ 87
           ++ E+   ++ + K    S+   +  L++  ++ EA  +   M  RN             
Sbjct: 115 RVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERN------------- 161

Query: 88  GCVYKRDMYTGQQIHARILKNGDFFAR----NEYVETKLVVFYAKCDALDVASRLFCRLR 143
             V    M TG   + R+ +  D F R    N      ++  + +   L  A ++F  + 
Sbjct: 162 -VVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMP 220

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGR 202
            KNV SW  +I    + G SE AL  FVEM +DG   P+     NVL AC  +  +G G+
Sbjct: 221 EKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQ 280

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI--ARNVVAWNSMIVGYVQ 260
            VH  + K  +    FVAS+L++MY KCG+L  ARK+FD ++   R++V WN MI  Y  
Sbjct: 281 QVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAH 340

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNV 319
           +G   EAI +F +M   G +P  VS   +LSA ++   +DEG      +   N ++L   
Sbjct: 341 HGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLRED 400

Query: 320 LGSSIINFYSKVGLLEDA 337
             + +++   + G L++A
Sbjct: 401 HHACLVDLCGRAGRLKEA 418


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  345 bits (885), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 190/603 (31%), Positives = 321/603 (53%), Gaps = 30/603 (4%)

Query: 202 RAVHGYVLKVGFD-GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           + VH  +L+   D     +   +I        L+ A  VF+ +        N  +    +
Sbjct: 40  KQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSR 99

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +   E+ + V+  M  +G+   R S   +L A + + +L EG + H +A   G + D  +
Sbjct: 100 SEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFV 159

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG----------------- 363
            + ++  Y+  G + +A ++F +M  RD+VTW+++I  Y QSG                 
Sbjct: 160 QTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNV 219

Query: 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV----LWNTLLAAYADLGRSGEASR 419
           + D ++ S+++    +   +   K + + I+  ++V    L + L+  YA  G    A  
Sbjct: 220 EPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALN 279

Query: 420 LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           LF +M       N+++  +++ G+ + GQ+  A+ +F QM    V+ +L+ W+ +ISG  
Sbjct: 280 LFEKMT----PKNLVASTAMVTGYSKLGQIENARSVFNQM----VKKDLVCWSAMISGYA 331

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           ++    EA+  F EM   GIKP   T+   ++AC  + +L   + IH ++ ++      P
Sbjct: 332 ESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALP 391

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           I  +L++MYAKCG++ +A+R+FD  P K +  +  MIS +AMHG A  AL  F  ++ + 
Sbjct: 392 INNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDEN 451

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           I+P+ ITF  +L ACSHAGLV EG ++F  M ++H + P   H+GC+V+L  R   L EA
Sbjct: 452 IEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREA 511

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
           L ++  MP  P+  I GSL++ C    E EL E+ ++ LL+L+PD+ G +V LSN YA +
Sbjct: 512 LELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKA 571

Query: 720 GRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
            RW +V QVR +MK KG+ K  GCS  ++  E+H F+  DRSH   +EIY  L  +   +
Sbjct: 572 RRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKL 631

Query: 780 RLV 782
           +LV
Sbjct: 632 KLV 634



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 145/539 (26%), Positives = 253/539 (46%), Gaps = 56/539 (10%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFY-AKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           +Q+HA+IL++     R+  +  KLV+   A   +LD A  +F  +           +   
Sbjct: 40  KQVHAQILRSK--LDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLREL 97

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            R    EK L+ +  M+  G++ D F  P +LKA   +  +  G  +HG   K+GFD   
Sbjct: 98  SRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDP 157

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           FV + L+ MY  CG + EAR +FD M  R+VV W+ MI GY Q+GL  +A+ +F EM   
Sbjct: 158 FVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNY 217

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            VEP  + ++++LSA      L  GK  H   + N + +D  L S+++  Y+  G ++ A
Sbjct: 218 NVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLA 277

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
             +F +M  +++V    ++  Y + GQ                  I+NA+ VFN ++ +D
Sbjct: 278 LNLFEKMTPKNLVASTAMVTGYSKLGQ------------------IENARSVFNQMVKKD 319

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK--DM 455
           +V W+ +++ YA+     EA  LF +MQ  GI P+ ++  SVI      G +++AK   +
Sbjct: 320 LVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHL 379

Query: 456 FLQMQSLG-----------------------------VQPNLITWTTLISGLTQNSCGNE 486
           F+     G                              + N+I+WT +IS    +     
Sbjct: 380 FVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGS 439

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI-VTSLV 545
           A+ FF +M +  I+P+  T    L AC+    +  GR I   +I      P  +    +V
Sbjct: 440 ALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMV 499

Query: 546 DMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           D++ +   + +A  + +  P +  + ++ ++++   +HG  +E L  F   +   +DPD
Sbjct: 500 DLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHG-EIE-LGEFAAKRLLELDPD 556



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 183/378 (48%), Gaps = 53/378 (14%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           +A+ L  EMK  N +    +   +L  C    ++  G+ IH  I++N      + ++++ 
Sbjct: 206 DALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENN--IVVDPHLQSA 263

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFS-------------------------------W 150
           LV  YA C ++D+A  LF ++  KN+ +                               W
Sbjct: 264 LVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCW 323

Query: 151 AAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK 210
           +A+I         ++AL  F EMQ  G+ PD   + +V+ AC  LG +   + +H +V K
Sbjct: 324 SAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDK 383

Query: 211 VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270
            GF G + + ++LI+MY KCG LE AR++FD M  +NV++W  MI  +  +G    A+R 
Sbjct: 384 NGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRF 443

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL--DNVLGSSIINFY 328
           F++M  E +EP  ++   +L A ++   ++EG++    ++IN   +   +V    +++ +
Sbjct: 444 FHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIF-YSMINEHNITPKHVHYGCMVDLF 502

Query: 329 SKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDV--VVASSIVDM--------- 376
            +  LL +A E+V +  +  +++ W  L+A+    G+ ++    A  ++++         
Sbjct: 503 GRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHV 562

Query: 377 -----YAKCERIDNAKQV 389
                YAK  R ++  QV
Sbjct: 563 FLSNIYAKARRWEDVGQV 580



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 19/235 (8%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  ++    +EA++L  EM+    +        ++  C +   +   + IH  + KNG 
Sbjct: 327 ISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNG- 385

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F     +   L+  YAKC +L+ A R+F ++  KNV SW  +I      G +  AL  F
Sbjct: 386 -FGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFF 444

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-------HGYVLKVGFDGCVFVASSL 223
            +M+++ + P+      VL AC   G V  GR +       H    K    GC      +
Sbjct: 445 HQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGC------M 498

Query: 224 IDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG---LNEEAIRVFYEM 274
           +D++G+   L EA ++ + M +A NV+ W S++     +G   L E A +   E+
Sbjct: 499 VDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLEL 553


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  345 bits (885), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 192/578 (33%), Positives = 312/578 (53%), Gaps = 27/578 (4%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +   ++  G +   FVA + I    +   +  ARK+FD +   N   WN+M  GY+QNG 
Sbjct: 31  IQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGH 90

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
           + + + +F E+      P   +   I+ +   L+ + EG++ H  A  +G + ++ + +S
Sbjct: 91  HRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATS 150

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
           +I+ YSK G +EDA  VF  M ER++V W  +I  Y+  G  DVV    + D+  +    
Sbjct: 151 LIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCG--DVVSGRRLFDLAPE---- 204

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
                       RDVV+W+ L++ Y +      A  LF +M     + + +SWN+++ G+
Sbjct: 205 ------------RDVVMWSVLISGYIESKNMAAARELFDKMP----NRDTMSWNAMLNGY 248

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPS 502
             NG++   + +F +M     + N+ +W  LI G  +N   +E +  F+ ML  G + P+
Sbjct: 249 AVNGEVEMFEKVFDEMP----ERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPN 304

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
             T+   LSAC+ + +L  G+ +H Y           +   L+DMYAKCG I  A  VF+
Sbjct: 305 DFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFN 364

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               K++  +N +I+G A+HG A +AL +F  ++ +G +PD +TF  IL+AC+H GLV +
Sbjct: 365 CLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKD 424

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G   F  M   + + P +EH+GC+V+LL R G LD+AL  I  MP +PDA I  +LL  C
Sbjct: 425 GFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGAC 484

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
                 E+AE   + L++LEP+NP N+V +SN Y   GR  +V++++  M++ G RK PG
Sbjct: 485 RLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPG 544

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           CS I+  + +  F + D  H +TE IY  L  L M +R
Sbjct: 545 CSVIECNDSVVEFYSLDERHSETESIYRVLKGLTMLLR 582



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 222/497 (44%), Gaps = 80/497 (16%)

Query: 76  QIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVA 135
           +I  E +  LL+ C   ++     QI A+I+ +G     N++V    +   ++   +  A
Sbjct: 9   RIVEEKFITLLRSC---KNYERLHQIQAQIVTHG--LEHNDFVAPNFITTCSRFKRIHHA 63

Query: 136 SRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
            +LF ++   N  +W A+     + G     ++ F E+      P+ F  P ++K+CG L
Sbjct: 64  RKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKL 123

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
             V  G  VH    K GF    FVA+SLIDMY K G +E+A KVF  M  RNVV W ++I
Sbjct: 124 EGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAII 183

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTR-VSVTSILSASANLDALDEGKQAHAVAVINGM 314
            GY+  G      R+F       + P R V + S+L +      ++    A A  + + M
Sbjct: 184 NGYILCGDVVSGRRLF------DLAPERDVVMWSVLISG----YIESKNMAAARELFDKM 233

Query: 315 -ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------- 363
              D +  ++++N Y+  G +E  E VF  M ER++ +WN LI  YV++G          
Sbjct: 234 PNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFK 293

Query: 364 -------------------------------------------QSDVVVASSIVDMYAKC 380
                                                      + ++ V + ++DMYAKC
Sbjct: 294 RMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKC 353

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             I+NA  VFN +  +D++ WNT++   A  G + +A  +F +M+ EG  P+ +++  ++
Sbjct: 354 GVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGIL 413

Query: 441 LGFLRNGQMNEAKDMFLQMQSL----GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
                   M   KD FL  +S+     + P +  +  ++  L +    ++A+ F ++M  
Sbjct: 414 SACT---HMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKM-- 468

Query: 497 TGIKPSTTTITCALSAC 513
             I+P        L AC
Sbjct: 469 -PIEPDAVIWAALLGAC 484



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 195/419 (46%), Gaps = 48/419 (11%)

Query: 73  RNFQIGPE----IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK 128
           R F + PE    ++  L+ G +  ++M   +++  + + N D  + N  +       YA 
Sbjct: 197 RLFDLAPERDVVMWSVLISGYIESKNMAAARELFDK-MPNRDTMSWNAMLNG-----YAV 250

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPN 187
              +++  ++F  +  +NVFSW  +IG   + GL  + L  F  M  +G V P++F L  
Sbjct: 251 NGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVA 310

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           VL AC  LG +  G+ VH Y   +G+ G +FV + LIDMY KCG +E A  VF+ +  ++
Sbjct: 311 VLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKD 370

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG----- 302
           +++WN++I G   +G   +A+ +F  M  EG EP  V+   ILSA  ++  + +G     
Sbjct: 371 IISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFK 430

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQ 361
                 +++  +E    +    ++   + GLL+ A     +M +E D V W  L+ +   
Sbjct: 431 SMVDHYSIVPQIEHYGCM----VDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGAC-- 484

Query: 362 SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
               +V +A   +    + E  + A  V  S I             Y DLGRS + +RL 
Sbjct: 485 RLYKNVEIAELALQRLIELEPNNPANFVMVSNI-------------YKDLGRSEDVARLK 531

Query: 422 YQMQLEGISP----NIISWNSVILGFL----RNGQMNEA----KDMFLQMQSLGVQPNL 468
             M+  G       ++I  N  ++ F     R+ +        K + + ++S G  PNL
Sbjct: 532 IAMRDTGFRKLPGCSVIECNDSVVEFYSLDERHSETESIYRVLKGLTMLLRSHGYVPNL 590


>gi|297742226|emb|CBI34375.3| unnamed protein product [Vitis vinifera]
          Length = 814

 Score =  345 bits (885), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 239/778 (30%), Positives = 368/778 (47%), Gaps = 109/778 (14%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           Q +A  LK+G  FA + ++ + +V  +A       A R        +  SW ++I    R
Sbjct: 41  QSYALFLKSG--FALDAFLSSFIVNRFAISGDFARARRFLLDTPYPDTVSWNSLISGYAR 98

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVF 218
                     F  ++  G+SPD F L +++K CG L         HG  LK+G  +G  F
Sbjct: 99  FRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCGVLEQ---NEVAHGVCLKMGLLNG--F 153

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V S L+D Y K GD++ A K F      + V W +M+ G+V NG  E+   VF EM   G
Sbjct: 154 VVSGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLG 213

Query: 279 V--EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV--LGSSIINFYSKVGLL 334
           +  E    S+TS+L A   L  + EG+Q   ++V  G+       L ++++N YS+ G  
Sbjct: 214 LGLELNEFSLTSVLGA---LSDVREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSK 270

Query: 335 EDAEVVFSRMVERDIVTWNLLI-ASY-----------VQSGQSDV--------------- 367
            DA  +F  M E D+V+W   I A+Y           V SG  +V               
Sbjct: 271 SDAIKMFDEMTEPDVVSWTERIGAAYDAIEAFELFRLVLSGNMEVNEYMLINVLSAMREP 330

Query: 368 -------------------VVAS---SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                              +VAS   +++ MY KC  +  A+ +F+ ++  D V WN+L+
Sbjct: 331 KLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLI 390

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI---------------------LGFL 444
           A YA+ G   +A ++F QM+   + PN  +  S++                     LGF+
Sbjct: 391 AGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFPEQAMQIHSYIVKLGFI 450

Query: 445 RNGQM--------------NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
            +  M               E+K ++  +     Q N++    + + L    C  +A+  
Sbjct: 451 VDDSMLSCLITAYGKCNMICESKRVYSDIS----QINVLHLNAMAATLVHAGCHADALKL 506

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           FQ       +    T++  L AC  +  L  GR IH   ++  +     + ++++D+Y K
Sbjct: 507 FQTGWRLHQEVDCITLSIVLKACGALTDLEYGRNIHSMALKSGMSQDNFVESAVIDVYCK 566

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           CG + +A + F       L  +NAM+ GYA HG   E   LF  + + GI PD IT+  +
Sbjct: 567 CGTVDEAAKTFMNVSKNNLVAWNAMVMGYAQHGCYHEVFELFNKMLELGIQPDEITYLGV 626

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           LN+C HAGLVNE       M   H V P +EH+ C+++L  R G L++A R I  MP  P
Sbjct: 627 LNSCCHAGLVNEAHTYLSSMLELHGVVPCLEHYACMIDLFGRVGLLEDAKRTIDQMPIMP 686

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
           DA I   LLS C      +L E  ++ L++L+P+N   YV LSN YA++GRWN V ++R 
Sbjct: 687 DAQIWQILLSGCNIHGNVDLGEVAAKKLIELQPENDSAYVLLSNLYASAGRWNAVGKLRR 746

Query: 731 IMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKVFCS 788
           +MK+K + K PG SWIQ+   +H F A D SHP+++EIY  L       RL  ++F S
Sbjct: 747 VMKKKIICKEPGSSWIQVRGSVHYFFASDTSHPESKEIYMKLQ------RLYEEMFAS 798



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 139/645 (21%), Positives = 267/645 (41%), Gaps = 116/645 (17%)

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
           P  L+A  +L         +   LK GF    F++S +++ +   GD   AR+       
Sbjct: 24  PQALRASASLLHPPLTDQSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPY 83

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
            + V+WNS+I GY +         +F  +   G+ P   S++S++        L++ + A
Sbjct: 84  PDTVSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCG---VLEQNEVA 140

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ- 364
           H V +  G+ L+  + S +++ Y+K+G ++ AE  F      D V W  ++  +V +G+ 
Sbjct: 141 HGVCLKMGL-LNGFVVSGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEF 199

Query: 365 -------------------------------SDVV---------------------VASS 372
                                          SDV                      + ++
Sbjct: 200 EKGREVFVEMRGLGLGLELNEFSLTSVLGALSDVREGEQVFGLSVKMGLLCGCSIHLNNA 259

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL---EGI 429
           +++MY++C    +A ++F+ +   DVV W   + A  D   + E  RL     +   E +
Sbjct: 260 LMNMYSRCGSKSDAIKMFDEMTEPDVVSWTERIGAAYDAIEAFELFRLVLSGNMEVNEYM 319

Query: 430 SPNIISW-----------------------------NSVILGFLRNGQMNEAKDMFLQMQ 460
             N++S                              N++I  + + G+M  A+ +F +M 
Sbjct: 320 LINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEM- 378

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
              +  + ++W +LI+G  +N    +A+  F +M +  ++P+  T+   L    +     
Sbjct: 379 ---LCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFPE 435

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGY 579
               IH Y+++    +   +++ L+  Y KC  I ++KRV+ DIS    L + NAM +  
Sbjct: 436 QAMQIHSYIVKLGFIVDDSMLSCLITAYGKCNMICESKRVYSDISQINVLHL-NAMAATL 494

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG-----LELFVGMFSDH 634
              G   +AL LF+   +   + D IT + +L AC     +  G     + L  GM  D+
Sbjct: 495 VHAGCHADALKLFQTGWRLHQEVDCITLSIVLKACGALTDLEYGRNIHSMALKSGMSQDN 554

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP----DAHIIGSLLSTCVKSNETEL 690
            V+ +      V+++  +CG +DEA +  + +  +     +A ++G     C      E+
Sbjct: 555 FVESA------VIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAMVMGYAQHGCYH----EV 604

Query: 691 AEYISEHL-LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
            E  ++ L L ++PD    Y+ + N+   +G  NE       M E
Sbjct: 605 FELFNKMLELGIQPDEI-TYLGVLNSCCHAGLVNEAHTYLSSMLE 648


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  345 bits (884), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 200/589 (33%), Positives = 308/589 (52%), Gaps = 40/589 (6%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV------- 256
           +H  +LK G       AS LI  Y     +   R VF   +A     + S          
Sbjct: 117 LHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTLL 176

Query: 257 -GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT-SILSASANLDALDEGKQAHAVAVINGM 314
             Y  N L   A+ VF ++ L      R + T S L  +     L   + AHA  V  G 
Sbjct: 177 RAYALNSLPHAALAVFLDVPLR----QRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGS 232

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIV 374
             D  +G+++I+ YSK   L DA+ VF  M  RD+V+WN  +A+ V+ G+          
Sbjct: 233 AEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGE---------- 282

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
                   +D A+ +F+ +  +D V WNT+L  YA  G + +A  LF +M       N++
Sbjct: 283 --------VDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMP----GRNVV 330

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           SW++V+  + + G M  A+ +F +M +     NL+TWT ++S   Q     EA   F EM
Sbjct: 331 SWSTVVSAYCKKGDMEMARVIFDKMPA----KNLVTWTIMVSACAQKGLVEEAGRLFTEM 386

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
           ++  I+     +   L+AC +  SL  G+ IH ++ +  L   T +  +L+DM+ KCG +
Sbjct: 387 MDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCV 446

Query: 555 HQAKRVFDIS-PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           ++A  +FD     K+L  +N +I G+AMHG   +AL LF  ++Q+G  PD++T  N+L+A
Sbjct: 447 NRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSA 506

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           C+H GLV EG   F  M +D+ +KP +EH+GC+V+LL R G + EA+ +I  MP +P+  
Sbjct: 507 CTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEV 566

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           I GSLLS C      E AE     L  L+P + GNY  LSN YA +G+W+++++ R  MK
Sbjct: 567 IWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMK 626

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
             G +K  G SWI++ E  H F   DR HP++++I   +  L  HV+ V
Sbjct: 627 GTGSQKTAGSSWIELNEAFHEFTVGDRKHPESDQISDMIDRLSSHVKFV 675



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 195/413 (47%), Gaps = 33/413 (7%)

Query: 102 HARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG 161
           HA ++K G   A + +V   L+  Y+K   L  A ++F  +  ++V SW   +    R G
Sbjct: 224 HAHVVKLGS--AEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQG 281

Query: 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA- 220
             + A   F EM E      N +L    KA         G A   + L     G   V+ 
Sbjct: 282 EVDAARSMFDEMPEKDTVSWNTMLDGYAKA---------GEAEKAFELFQRMPGRNVVSW 332

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           S+++  Y K GD+E AR +FD M A+N+V W  M+    Q GL EEA R+F EM    +E
Sbjct: 333 STVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIE 392

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
              ++V SIL+A A   +L  GK+ H       +    ++ +++++ + K G +  A+ +
Sbjct: 393 LDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYI 452

Query: 341 F-SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
           F + +VE+D+V+WN++I  +   G  +       ++++A+ +     +Q F+     D V
Sbjct: 453 FDTEIVEKDLVSWNIIIGGFAMHGPGE-----KALELFAQMK-----QQGFHP----DAV 498

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
               +L+A   +G   E  R F  M+ + GI P I  +  ++    R G + EA DM  +
Sbjct: 499 TLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKR 558

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           M     +PN + W +L+S    +     A L   E+  + ++PS+      LS
Sbjct: 559 MP---WEPNEVIWGSLLSACRLHKNVEYAELAVNEL--SNLQPSSAGNYAVLS 606



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 199/443 (44%), Gaps = 52/443 (11%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYA--------KC---DALDVASRLFCRLRVKNV 147
           Q++HA++LK G    R+ +  +KL+  YA        +C    A+ + +  F        
Sbjct: 115 QELHAQLLKQG--LHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLT 172

Query: 148 FSWAAIIGLNCRVGLSEKALIGF--VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
            +      LN    L   AL  F  V +++ G     F    ++KA  A G     R  H
Sbjct: 173 KTLLRAYALN---SLPHAALAVFLDVPLRQRG----TFTYSFLIKALAAAGLTPV-RGAH 224

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
            +V+K+G     FV ++LID Y K   L +A+KVFD M  R+VV+WN+ +   V+ G  +
Sbjct: 225 AHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVD 284

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSI 324
            A  +F EM     E   VS  ++L   A       G+   A  +   M   NV+  S++
Sbjct: 285 AARSMFDEMP----EKDTVSWNTMLDGYAK-----AGEAEKAFELFQRMPGRNVVSWSTV 335

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDV 367
           ++ Y K G +E A V+F +M  +++VTW +++++  Q G                 + DV
Sbjct: 336 VSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDV 395

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL-GRSGEASRLFYQMQL 426
           +   SI+   A+   +   K++   +  R +     +  A  D+  + G  +R  Y    
Sbjct: 396 IAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDT 455

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
           E +  +++SWN +I GF  +G   +A ++F QM+  G  P+ +T   ++S  T      E
Sbjct: 456 EIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEE 515

Query: 487 AILFFQEM-LETGIKPSTTTITC 508
              FF  M  + GIKP      C
Sbjct: 516 GRRFFANMETDYGIKPQIEHYGC 538



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 25/232 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+ +++  + EA  L TEM     ++       +L  C     +  G++IH  + +   
Sbjct: 367 VSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRK- 425

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLF-CRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
             +R+  V   L+  + KC  ++ A  +F   +  K++ SW  IIG     G  EKAL  
Sbjct: 426 -LSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALEL 484

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-------HGYVLKVGFDGCVFVASS 222
           F +M++ G  PD   L NVL AC  +G V  GR         +G   ++   GC      
Sbjct: 485 FAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGC------ 538

Query: 223 LIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI--------VGYVQNGLNE 265
           ++D+ G+ G ++EA  +   M    N V W S++        V Y +  +NE
Sbjct: 539 MVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNE 590


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  345 bits (884), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 200/589 (33%), Positives = 308/589 (52%), Gaps = 40/589 (6%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV------- 256
           +H  +LK G       AS LI  Y     +   R VF   +A     + S          
Sbjct: 45  LHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTLL 104

Query: 257 -GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT-SILSASANLDALDEGKQAHAVAVINGM 314
             Y  N L   A+ VF ++ L      R + T S L  +     L   + AHA  V  G 
Sbjct: 105 RAYALNSLPHAALAVFLDVPLR----QRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGS 160

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIV 374
             D  +G+++I+ YSK   L DA+ VF  M  RD+V+WN  +A+ V+ G+          
Sbjct: 161 AEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGE---------- 210

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
                   +D A+ +F+ +  +D V WNT+L  YA  G + +A  LF +M       N++
Sbjct: 211 --------VDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMP----GRNVV 258

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           SW++V+  + + G M  A+ +F +M +     NL+TWT ++S   Q     EA   F EM
Sbjct: 259 SWSTVVSAYCKKGDMEMARVIFDKMPA----KNLVTWTIMVSACAQKGLVEEAGRLFTEM 314

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
           ++  I+     +   L+AC +  SL  G+ IH ++ +  L   T +  +L+DM+ KCG +
Sbjct: 315 MDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCV 374

Query: 555 HQAKRVFDIS-PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           ++A  +FD     K+L  +N +I G+AMHG   +AL LF  ++Q+G  PD++T  N+L+A
Sbjct: 375 NRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSA 434

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           C+H GLV EG   F  M +D+ +KP +EH+GC+V+LL R G + EA+ +I  MP +P+  
Sbjct: 435 CTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEV 494

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           I GSLLS C      E AE     L  L+P + GNY  LSN YA +G+W+++++ R  MK
Sbjct: 495 IWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMK 554

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
             G +K  G SWI++ E  H F   DR HP++++I   +  L  HV+ V
Sbjct: 555 GTGSQKTAGSSWIELNEAFHEFTVGDRKHPESDQISDMIDRLSSHVKFV 603



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 195/413 (47%), Gaps = 33/413 (7%)

Query: 102 HARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG 161
           HA ++K G   A + +V   L+  Y+K   L  A ++F  +  ++V SW   +    R G
Sbjct: 152 HAHVVKLGS--AEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQG 209

Query: 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA- 220
             + A   F EM E      N +L    KA         G A   + L     G   V+ 
Sbjct: 210 EVDAARSMFDEMPEKDTVSWNTMLDGYAKA---------GEAEKAFELFQRMPGRNVVSW 260

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           S+++  Y K GD+E AR +FD M A+N+V W  M+    Q GL EEA R+F EM    +E
Sbjct: 261 STVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIE 320

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
              ++V SIL+A A   +L  GK+ H       +    ++ +++++ + K G +  A+ +
Sbjct: 321 LDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYI 380

Query: 341 F-SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
           F + +VE+D+V+WN++I  +   G  +       ++++A+ +     +Q F+     D V
Sbjct: 381 FDTEIVEKDLVSWNIIIGGFAMHGPGE-----KALELFAQMK-----QQGFHP----DAV 426

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
               +L+A   +G   E  R F  M+ + GI P I  +  ++    R G + EA DM  +
Sbjct: 427 TLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKR 486

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           M     +PN + W +L+S    +     A L   E+  + ++PS+      LS
Sbjct: 487 MP---WEPNEVIWGSLLSACRLHKNVEYAELAVNEL--SNLQPSSAGNYAVLS 534



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 201/446 (45%), Gaps = 58/446 (13%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYA--------KC---DALDVASRLFCRLRVKNV 147
           Q++HA++LK G    R+ +  +KL+  YA        +C    A+ + +  F        
Sbjct: 43  QELHAQLLKQG--LHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLT 100

Query: 148 FSWAAIIGLNCRVGLSEKALIGF--VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
            +      LN    L   AL  F  V +++ G     F    ++KA  A G     R  H
Sbjct: 101 KTLLRAYALN---SLPHAALAVFLDVPLRQRG----TFTYSFLIKALAAAGLTPV-RGAH 152

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
            +V+K+G     FV ++LID Y K   L +A+KVFD M  R+VV+WN+ +   V+ G  +
Sbjct: 153 AHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVD 212

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSI 324
            A  +F EM     E   VS  ++L   A       G+   A  +   M   NV+  S++
Sbjct: 213 AARSMFDEMP----EKDTVSWNTMLDGYAK-----AGEAEKAFELFQRMPGRNVVSWSTV 263

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDV 367
           ++ Y K G +E A V+F +M  +++VTW +++++  Q G                 + DV
Sbjct: 264 VSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDV 323

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
           +   SI+   A+   +   K++   +    + R  ++ N L+  +    + G  +R  Y 
Sbjct: 324 IAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFC---KCGCVNRADYI 380

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
              E +  +++SWN +I GF  +G   +A ++F QM+  G  P+ +T   ++S  T    
Sbjct: 381 FDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGL 440

Query: 484 GNEAILFFQEM-LETGIKPSTTTITC 508
             E   FF  M  + GIKP      C
Sbjct: 441 VEEGRRFFANMETDYGIKPQIEHYGC 466



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 25/232 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+ +++  + EA  L TEM     ++       +L  C     +  G++IH  + +   
Sbjct: 295 VSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRK- 353

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLF-CRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
             +R+  V   L+  + KC  ++ A  +F   +  K++ SW  IIG     G  EKAL  
Sbjct: 354 -LSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALEL 412

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-------HGYVLKVGFDGCVFVASS 222
           F +M++ G  PD   L NVL AC  +G V  GR         +G   ++   GC      
Sbjct: 413 FAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGC------ 466

Query: 223 LIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI--------VGYVQNGLNE 265
           ++D+ G+ G ++EA  +   M    N V W S++        V Y +  +NE
Sbjct: 467 MVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNE 518


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  345 bits (884), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 195/616 (31%), Positives = 323/616 (52%), Gaps = 44/616 (7%)

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           V  D F+  ++L+ CG    +     +   ++  G +G  +V  S I    + G +  AR
Sbjct: 20  VVEDKFI--SLLRTCGTCVRL---HQIQAQIVTHGLEGNDYVTPSFITACARLGGIRRAR 74

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
           +VFD     N   WN+M  GY Q   + + + +F  M   G  P   +   ++ + A  +
Sbjct: 75  RVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATAN 134

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG--LLEDAEVVFSRMVERDIVTWNLL 355
           A  EG++ H V    G + +  +G ++I+ YS  G   + DA  VF+ M ++++  W  +
Sbjct: 135 AAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAI 194

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
           +A++V                   C  + +A+++F+    RDVVLWN +++ Y +LG   
Sbjct: 195 VAAHVA------------------CRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMV 236

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            A  LF +M       +++SWN+V+ G+  NG++     +F +M       N+ +W  LI
Sbjct: 237 AARELFDRMP----DRDVMSWNTVLSGYATNGEVESFVKLFEEMPV----RNVYSWNGLI 288

Query: 476 SGLTQNSCGNEAILFFQEML-----------ETGIKPSTTTITCALSACTDVASLRNGRA 524
            G  +N    EA+  F+ ML           +  + P+  T+   L+AC+ +  L  G+ 
Sbjct: 289 GGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKW 348

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           +H Y           +  +L+DMYAKCG I +A  VFD    K++  +N +I+G AMHG 
Sbjct: 349 VHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGH 408

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG 644
             +AL+LF+ +++ G  PD +TF  IL+AC+H GLV  GL  F  M  D+ + P +EH+G
Sbjct: 409 VADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYG 468

Query: 645 CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
           C+V+LL R G +D+A+ ++  MP +PDA I  +LL  C      E+AE   + L++LEP+
Sbjct: 469 CMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIELEPN 528

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPK 764
           NPGN+V +SN Y   GR  +V++++  M++ G RK PGCS I   + +  F + D  HP+
Sbjct: 529 NPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSMVEFYSLDERHPE 588

Query: 765 TEEIYATLALLGMHVR 780
           T+ IY  L  L + +R
Sbjct: 589 TDSIYRALQGLTILLR 604



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 133/560 (23%), Positives = 220/560 (39%), Gaps = 136/560 (24%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
            QI A+I+ +G     N+YV    +   A+   +  A R+F +    N  +W A+     
Sbjct: 39  HQIQAQIVTHG--LEGNDYVTPSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYA 96

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +       ++ F  M   G SP+ F  P V+K+C        G  VH  V K GF    F
Sbjct: 97  QANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTF 156

Query: 219 VASSLIDMYGKCGD--LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V  +LI MY   G   + +A KVF  M  +NV AW +++  +V       A R+F     
Sbjct: 157 VGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLF----- 211

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
             + P R                                 D VL + +++ Y ++G +  
Sbjct: 212 -DLAPQR---------------------------------DVVLWNVVVSGYIELGDMVA 237

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           A  +F RM +RD+++WN +++ Y  +G+ +  V                  ++F  + +R
Sbjct: 238 ARELFDRMPDRDVMSWNTVLSGYATNGEVESFV------------------KLFEEMPVR 279

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQM--QLEG---------ISPNIISWNSVILGFLR 445
           +V  WN L+  Y   G   EA   F +M   +EG         + PN  +  +V+    R
Sbjct: 280 NVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSR 339

Query: 446 NGQMNEAKDMFLQMQSLGVQPNL-------------------------------ITWTTL 474
            G +   K + +  +S+G + NL                               ITW T+
Sbjct: 340 LGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTI 399

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           I+GL  +    +A+  F+ M   G +P   T    LSACT +  +RNG  +H        
Sbjct: 400 INGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNG-LLH-------- 450

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
                   S+VD Y+             I P  E   Y  M+      GL  +A+ + + 
Sbjct: 451 ------FQSMVDDYS-------------IVPQIEH--YGCMVDLLGRAGLIDKAVDIVRK 489

Query: 595 LQQKGIDPDSITFTNILNAC 614
           +    ++PD++ +  +L AC
Sbjct: 490 MP---MEPDAVIWAALLGAC 506


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  345 bits (884), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 216/713 (30%), Positives = 359/713 (50%), Gaps = 63/713 (8%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
           +LLQ  +   D+  GQ IHA + K G  +  + +    LV  Y K + L  A  +F  + 
Sbjct: 83  QLLQISIGSGDLMLGQAIHAFLAKLG--YQNDAFRGNNLVNLYGKFNKLGDAQSVFDEML 140

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
           V+N  +W  +I  + +V   E       EM   G   +      +L+AC +L  +  G  
Sbjct: 141 VRNTITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQ 200

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +HG+V+K GFD  VFV +SLI MY +CGDL  A KV+  +  ++V   N MI  Y + G 
Sbjct: 201 IHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGC 260

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
            E+AI VF  +   G+EP   + T+++SA      ++  +  H + +  G   +  +G++
Sbjct: 261 GEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNA 320

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS-----------------D 366
           I++ Y K G+LE+AE  F  M ER++V+W  L++ YV++G                   D
Sbjct: 321 IVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFD 380

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFY 422
               ++++D  ++C+ +    Q+   ++    + DV +   L+  YA   +   A  +F+
Sbjct: 381 SCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFH 440

Query: 423 QMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
            +    +  NI+S+N+++ G++   +                                  
Sbjct: 441 SL----LDKNIVSFNAILSGYIGADE---------------------------------- 462

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
              +A+  F ++    IKP + T    LS   D A L  G+ +H Y+I+        +  
Sbjct: 463 --EDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFEANPSVGN 520

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
           +++ MYAKCG+I  A ++F      +   +NA+IS YA+HG   +AL LF+ ++++   P
Sbjct: 521 AVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALHGQGRKALILFEEMKKEEFVP 580

Query: 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
           D IT  ++L ACS++GL+ EG  LF  M S + +KP +EHF C+V+LL R G L EA+  
Sbjct: 581 DEITILSVLQACSYSGLLEEGFCLFNDMESKYGIKPEIEHFACMVDLLGRAGYLSEAMSF 640

Query: 663 ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722
           I   P      +  +L+  C    +    +  S+HLL L P+  G+Y+ +SN YA  G  
Sbjct: 641 INRSPFSGSPLLWRTLVHVCKLHGDLNFGQIASKHLLDLAPEEAGSYILVSNLYAGGGML 700

Query: 723 NEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           NE ++VR +M +  + K  G SWI+I  ++H FVA D+ HP+++EIYA L LL
Sbjct: 701 NEAARVRTVMNDLKVSKEAGSSWIEIDNKVHQFVASDKDHPESKEIYAKLDLL 753



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 246/493 (49%), Gaps = 44/493 (8%)

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
           P +L+     G +  G+A+H ++ K+G+    F  ++L+++YGK   L +A+ VFD M+ 
Sbjct: 82  PQLLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLV 141

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           RN + W ++I G++Q    E   R+  EM   G E    + + IL A  +L+ L  G+Q 
Sbjct: 142 RNTITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQI 201

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           H   +  G + D  +G+S+I+ YS+ G L  AE V+S +  +D+   N +I+ Y ++G  
Sbjct: 202 HGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCG 261

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           +  +   +  + +  E               D    N + A   D+    E  R+ + M 
Sbjct: 262 EKAIGVFLHLLGSGLEP-------------NDYTFTNVISACNGDIDV--EVLRVLHGMC 306

Query: 426 LE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
           ++ G    I   N+++  ++++G + EA+  F  M     + NL++WT L+SG  +N  G
Sbjct: 307 IKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMG----ERNLVSWTALLSGYVKNGNG 362

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
            +A+  F ++LE G+   +      L  C++  +L  G  IHG++++        + T+L
Sbjct: 363 KKALEGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSVGTAL 422

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           +D+YAKC  +  A+ VF     K +  +NA++SGY +     +A+ALF  L+   I PDS
Sbjct: 423 IDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGY-IGADEEDAMALFSQLRLADIKPDS 481

Query: 605 ITFTNILN-----------ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
           +TF  +L+            C HA ++  G E            PS+ +   V+ + ++C
Sbjct: 482 VTFARLLSLSADQACLVKGKCLHAYIIKTGFE----------ANPSVGN--AVITMYAKC 529

Query: 654 GNLDEALRVILTM 666
           G++ +A ++  +M
Sbjct: 530 GSIGDACQLFYSM 542



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 10/257 (3%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  LL GC   +++  G QIH  ++K G  +  +  V T L+  YAKC  L  A  +F  
Sbjct: 384 FATLLDGCSECKNLGLGLQIHGFVVKLG--YVHDVSVGTALIDLYAKCRKLRSARLVFHS 441

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEK-ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
           L  KN+ S+ AI  L+  +G  E+ A+  F +++   + PD+     +L        +  
Sbjct: 442 LLDKNIVSFNAI--LSGYIGADEEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVK 499

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ +H Y++K GF+    V +++I MY KCG + +A ++F  M   + ++WN++I  Y  
Sbjct: 500 GKCLHAYIIKTGFEANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYAL 559

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +G   +A+ +F EM  E   P  +++ S+L A +    L+EG       + N ME    +
Sbjct: 560 HGQGRKALILFEEMKKEEFVPDEITILSVLQACSYSGLLEEG-----FCLFNDMESKYGI 614

Query: 321 GSSIINFYSKVGLLEDA 337
              I +F   V LL  A
Sbjct: 615 KPEIEHFACMVDLLGRA 631



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 125/278 (44%), Gaps = 17/278 (6%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
            +A+ L ++++  + +     +  LL     +  +  G+ +HA I+K G  F  N  V  
Sbjct: 463 EDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTG--FEANPSVGN 520

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            ++  YAKC ++  A +LF  +   +  SW A+I      G   KALI F EM+++   P
Sbjct: 521 AVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALHGQGRKALILFEEMKKEEFVP 580

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYV-LKVGFDGCVFVASSLIDMYGKCGDLEEA--- 236
           D   + +VL+AC   G +  G  +   +  K G    +   + ++D+ G+ G L EA   
Sbjct: 581 DEITILSVLQACSYSGLLEEGFCLFNDMESKYGIKPEIEHFACMVDLLGRAGYLSEAMSF 640

Query: 237 --RKVFDGMIARNVVAWNSMI-VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
             R  F G    + + W +++ V  +   LN   I   + + L   E     + S L A 
Sbjct: 641 INRSPFSG----SPLLWRTLVHVCKLHGDLNFGQIASKHLLDLAPEEAGSYILVSNLYAG 696

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
             +  L+E   A    V+N +++    GSS I   +KV
Sbjct: 697 GGM--LNEA--ARVRTVMNDLKVSKEAGSSWIEIDNKV 730


>gi|297827241|ref|XP_002881503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327342|gb|EFH57762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 669

 Score =  345 bits (884), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 217/698 (31%), Positives = 344/698 (49%), Gaps = 100/698 (14%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           YG L+Q     R      Q+HARI+      A + ++ +KL+ FY + +    A  +F  
Sbjct: 25  YGHLIQHFTRHRLPLHALQLHARIVVFS--IAPDNFLASKLISFYTRQNRFHQALHVFDE 82

Query: 142 LRVKNVFSW-AAIIGLNCRVGLSEK-----ALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
           + V+N FS+ A +I    R    +      + IG          PD+  +  VLKA    
Sbjct: 83  ITVRNAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSGAARPDSISISCVLKALSGC 142

Query: 196 G--WVG-FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
              W+G   R VHG+V++ G D  VFV + LI  Y KC ++E ARKVFD M  R+VV+WN
Sbjct: 143 DDFWLGSLARQVHGFVIRGGSDSDVFVGNGLITYYTKCDNIESARKVFDEMSDRDVVSWN 202

Query: 253 SMIVGYVQNGLNEEAIRVFYEMT-LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           SMI GY Q+G  E+  +++  M      +P  V+V S+L A      L  G + H   + 
Sbjct: 203 SMISGYSQSGSFEDCKKLYKAMLGCSDFKPNEVTVISVLQACGQSSDLVFGMEVHKKMIE 262

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVAS 371
           N +++D  L +++I FY+K G L+ A  +F  M E+D VT+  +I+ Y+  G     +A 
Sbjct: 263 NHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMA- 321

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
                                                           LF +M+  G+S 
Sbjct: 322 ------------------------------------------------LFSEMESIGLS- 332

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
              +WN+VI G ++N    E  + F +M   G +PN +T ++L+  LT +S         
Sbjct: 333 ---TWNAVISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSS--------- 380

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
                                     +L+ G+ IH + IR+       + TS++D YAK 
Sbjct: 381 --------------------------NLKGGKEIHAFAIRNGSDNNIYVTTSIIDNYAKL 414

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G +  A+RVFD    + L V+ A+I+ YA+HG +  A +LF  +Q  G  PD++T T +L
Sbjct: 415 GFLLGAQRVFDNCKDRSLIVWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDNVTLTAVL 474

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
           +A +H+G  ++   +F  M + + ++P +EH+ C+V++LSR G L  A+  I  MP +P 
Sbjct: 475 SAFAHSGDSDKAQHIFDSMLTKYNIEPGVEHYACMVSVLSRAGKLSNAMEFISKMPIEPI 534

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
           A + G+LL+      + E+A +  + L ++EP+N GNY  ++N Y  +GRW E   VRD 
Sbjct: 535 AKVWGALLNGASVLGDVEIARFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEVVRDK 594

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           MK  GL+K PG SWI+  + L  F+A D S  +++E+Y
Sbjct: 595 MKRIGLKKIPGTSWIETNKGLRSFIAKDSSCERSKEMY 632



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 34/291 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEM-KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHAR 104
           S+   IS  S+     +   L   M  C +F+        +LQ C    D+  G ++H +
Sbjct: 200 SWNSMISGYSQSGSFEDCKKLYKAMLGCSDFKPNEVTVISVLQACGQSSDLVFGMEVHKK 259

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           +++N      +  +   ++ FYAKC +LD A  LF  +  K+  ++ AII      GL +
Sbjct: 260 MIEN--HIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVK 317

Query: 165 KALIGFVEMQEDGVSPDNFVL-------------------------PNVLKACGALGWVG 199
           +A+  F EM+  G+S  N V+                         PN +     L  + 
Sbjct: 318 EAMALFSEMESIGLSTWNAVISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLT 377

Query: 200 F------GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
           +      G+ +H + ++ G D  ++V +S+ID Y K G L  A++VFD    R+++ W +
Sbjct: 378 YSSNLKGGKEIHAFAIRNGSDNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIVWTA 437

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
           +I  Y  +G ++ A  +F +M   G +P  V++T++LSA A+    D+ + 
Sbjct: 438 IITAYAVHGDSDSACSLFDQMQCLGTKPDNVTLTAVLSAFAHSGDSDKAQH 488


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 208/723 (28%), Positives = 361/723 (49%), Gaps = 87/723 (12%)

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSW-A 151
           R  Y  ++I  R++KNG     + ++ + LV  Y KC++L  A ++   + +++V  W  
Sbjct: 3   RAKYILKKIIFRVIKNG--ICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQ 60

Query: 152 AIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV 211
            +   N    L E   + F  M+   +  + F+  +++ A  +LG   +G ++H  V K 
Sbjct: 61  KLSSANSPYPLQEAVQL-FYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKY 119

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
           GF+  + ++++ + MY K   +E   + F  M+  N+ + N+++ G+      ++  R+ 
Sbjct: 120 GFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRIL 179

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
            ++ +EG EP   +  SIL   A+   L+EGK  H   + +G+  D+ L           
Sbjct: 180 IQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHL----------- 228

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
                               WN                  S+V++YAKC   + A +VF 
Sbjct: 229 --------------------WN------------------SLVNVYAKCGSANYACKVFG 250

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------L 441
            I  RDVV W  L+  +   G  G   R+F QM  EG +PN+ ++ S++          L
Sbjct: 251 EIPERDVVSWTALITGFVAEGY-GSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 309

Query: 442 GFLRNGQMNE-----------------AKDMFLQ----MQSLGVQPNLITWTTLISGLTQ 480
           G   + Q+ +                 AK+ FL+    + +  ++ +L  WT +++G  Q
Sbjct: 310 GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 369

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
           +  G +A+  F +M   G+KP+  T+  +LS C+ +A+L +GR +H   I+        +
Sbjct: 370 DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFV 429

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
            ++LVDMYAKCG +  A+ VFD   S++   +N +I GY+ HG   +AL  F+ +  +G 
Sbjct: 430 ASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 489

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
            PD +TF  +L+ACSH GL+ EG + F  +   + + P++EH+ C+V++L R G   E  
Sbjct: 490 VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVE 549

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
             I  M    +  I  ++L  C      E  E  +  L +LEP+   NY+ LSN +AA G
Sbjct: 550 SFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKG 609

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            W++V+ VR +M  +G++K PGCSW+++  ++HVF++ D SHPK  EI+  L L  +H +
Sbjct: 610 MWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIH--LKLQDLHQK 667

Query: 781 LVS 783
           L+S
Sbjct: 668 LMS 670



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/503 (26%), Positives = 246/503 (48%), Gaps = 56/503 (11%)

Query: 45  KSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHAR 104
           + +  ++SS +    ++EAV L   M+    ++   I+  L+       D + G+ IHA 
Sbjct: 56  QQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHAC 115

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           + K G  F  +  +    V  Y K  +++   + F  + ++N+ S   ++   C     +
Sbjct: 116 VCKYG--FESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCD 173

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
           +     +++  +G  P+ +   ++LK C + G +  G+A+HG V+K G +    + +SL+
Sbjct: 174 QGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLV 233

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
           ++Y KCG    A KVF  +  R+VV+W ++I G+V  G     +R+F +M  EG  P   
Sbjct: 234 NVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMY 292

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +  SIL + ++L  +D GKQ HA  V N ++ ++ +G+++++ Y+K   LEDAE +F+R+
Sbjct: 293 TFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL 352

Query: 345 VERDIVTWNLLIASYVQSGQ---------------------------------------- 364
           ++RD+  W +++A Y Q GQ                                        
Sbjct: 353 IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGR 412

Query: 365 ------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                        D+ VAS++VDMYAKC  +++A+ VF+ ++ RD V WNT++  Y+  G
Sbjct: 413 QLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHG 472

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL-GVQPNLITW 471
           + G+A + F  M  EG  P+ +++  V+      G + E K  F  +  + G+ P +  +
Sbjct: 473 QGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHY 532

Query: 472 TTLISGLTQNSCGNEAILFFQEM 494
             ++  L +    +E   F +EM
Sbjct: 533 ACMVDILGRAGKFHEVESFIEEM 555


>gi|414867972|tpg|DAA46529.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 993

 Score =  344 bits (883), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 236/832 (28%), Positives = 388/832 (46%), Gaps = 98/832 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYK---RDMYTGQQIH 102
           S++  +S  ++      A  LL  M+ R+  +       L+  C ++        G  IH
Sbjct: 8   SWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGAACGAAIH 67

Query: 103 ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL 162
           A   + G     N Y+ T L+  Y     +  A RLF  +  +NV SW AI+      G 
Sbjct: 68  ALTHRAG--LMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGC 125

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
            E+AL+ +  M+++GV  +   L  V+  CGAL     G  V  +V+  G    V VA+S
Sbjct: 126 MEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANS 185

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI M+G    +++A ++FD M  R+ ++WN+MI  Y    +  +   V  +M    V+P 
Sbjct: 186 LITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPD 245

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
             ++ S++S  A+ D +  G   H++ V +G+     L ++++N YS  G L++AE +F 
Sbjct: 246 VTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFR 305

Query: 343 RMVERDIVTWNLLIASYVQSG--------------------------------------- 363
            M  RD+++WN +I+SYVQS                                        
Sbjct: 306 NMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALM 365

Query: 364 --------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                         Q+ +++ +S++ MY+KC  +++ ++VF S+   DVV  N L   YA
Sbjct: 366 NGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYA 425

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISW--------------------------------- 436
            L     A R+F  M+  GI PN I+                                  
Sbjct: 426 ALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDE 485

Query: 437 ---NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
              NS+I  +   G +  +  +F ++ +  V    I+W  +I+   ++  G EAI  F +
Sbjct: 486 YITNSLITMYATCGDLESSTGIFSRINNKSV----ISWNAIIAANVRHGRGEEAIKLFMD 541

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
               G K     +   LS+  ++ASL  G  +HG  +++ L   + +V + +DMY KCG 
Sbjct: 542 SQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGK 601

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +    +       +    +N +ISGYA +G   EA   FK++   G  PD +TF  +L+A
Sbjct: 602 MDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSA 661

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           CSHAGL+++G++ +  M     V P ++H  C+V+LL R G   EA + I  MP  P+  
Sbjct: 662 CSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDL 721

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           I  SLLS+       ++    +++LL+L+P +   YV LSN YA + RW +V ++R  MK
Sbjct: 722 IWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMK 781

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
              L K P CSW+++  E+  F   DRSH   E+IY  L  + + +R V  V
Sbjct: 782 TIKLNKRPACSWLKLKNEVSTFGIGDRSHMHAEKIYVKLDEILLKLREVGYV 833


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  344 bits (883), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 236/832 (28%), Positives = 388/832 (46%), Gaps = 98/832 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYK---RDMYTGQQIH 102
           S++  +S  ++      A  LL  M+ R+  +       L+  C ++        G  IH
Sbjct: 8   SWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGAACGAAIH 67

Query: 103 ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL 162
           A   + G     N Y+ T L+  Y     +  A RLF  +  +NV SW AI+      G 
Sbjct: 68  ALTHRAG--LMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGC 125

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
            E+AL+ +  M+++GV  +   L  V+  CGAL     G  V  +V+  G    V VA+S
Sbjct: 126 MEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANS 185

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI M+G    +++A ++FD M  R+ ++WN+MI  Y    +  +   V  +M    V+P 
Sbjct: 186 LITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPD 245

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
             ++ S++S  A+ D +  G   H++ V +G+     L ++++N YS  G L++AE +F 
Sbjct: 246 VTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFR 305

Query: 343 RMVERDIVTWNLLIASYVQSG--------------------------------------- 363
            M  RD+++WN +I+SYVQS                                        
Sbjct: 306 NMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALM 365

Query: 364 --------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                         Q+ +++ +S++ MY+KC  +++ ++VF S+   DVV  N L   YA
Sbjct: 366 NGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYA 425

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISW--------------------------------- 436
            L     A R+F  M+  GI PN I+                                  
Sbjct: 426 ALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDE 485

Query: 437 ---NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
              NS+I  +   G +  +  +F ++ +  V    I+W  +I+   ++  G EAI  F +
Sbjct: 486 YITNSLITMYATCGDLESSTGIFSRINNKSV----ISWNAIIAANVRHGRGEEAIKLFMD 541

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
               G K     +   LS+  ++ASL  G  +HG  +++ L   + +V + +DMY KCG 
Sbjct: 542 SQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGK 601

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +    +       +    +N +ISGYA +G   EA   FK++   G  PD +TF  +L+A
Sbjct: 602 MDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSA 661

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           CSHAGL+++G++ +  M     V P ++H  C+V+LL R G   EA + I  MP  P+  
Sbjct: 662 CSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDL 721

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           I  SLLS+       ++    +++LL+L+P +   YV LSN YA + RW +V ++R  MK
Sbjct: 722 IWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMK 781

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
              L K P CSW+++  E+  F   DRSH   E+IY  L  + + +R V  V
Sbjct: 782 TIKLNKRPACSWLKLKNEVSTFGIGDRSHMHAEKIYVKLDEILLKLREVGYV 833


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  344 bits (883), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 205/662 (30%), Positives = 337/662 (50%), Gaps = 90/662 (13%)

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           F + +H  ++  G    +F+++ L+++Y   GD+  +R  FD +  ++V  WNSMI  YV
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 260 QNGLNEEAIRVFYEMTL-EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            NG   EAI  FY++ L   + P   +   +L A   L    +G++ H  A   G + + 
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRRIHCWAFKLGFQWNV 250

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS------------- 365
            + +S+I+ YS+ G    A  +F  M  RD+ +WN +I+  +Q+G +             
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 366 ---------------------------------------DVVVASSIVDMYAKCERIDNA 386
                                                  D+ V++++++MYAK   +++A
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV------- 439
           ++ F  + + DVV WN+++AAY        A   F +MQL G  P++++  S+       
Sbjct: 371 RKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQS 430

Query: 440 --------ILGF-LRNGQM-------NEAKDMFLQMQSLG---------VQPNLITWTTL 474
                   + GF +R G +       N   DM+ ++  L          +  ++I+W TL
Sbjct: 431 RDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTL 490

Query: 475 ISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           I+G  QN   +EAI  ++ M E   I P+  T    L A   V +L+ G  IHG +I+ +
Sbjct: 491 ITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTN 550

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
           L L   + T L+D+Y KCG +  A  +F   P +    +NA+IS + +HG A + L LF 
Sbjct: 551 LHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFG 610

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            +  +G+ PD +TF ++L+ACSH+G V EG   F  +  ++ +KPS++H+GC+V+LL R 
Sbjct: 611 EMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGRA 669

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G L+ A   I  MP  PDA I G+LL  C      EL ++ S+ L +++  N G YV LS
Sbjct: 670 GYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLS 729

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           N YA  G+W  V +VR + +E+GL+K PG S I++  ++ VF   ++SHPK +EIY  L 
Sbjct: 730 NIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELR 789

Query: 774 LL 775
           +L
Sbjct: 790 VL 791



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 214/435 (49%), Gaps = 27/435 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS L +     +A+D+L EM+    ++       +L  C    D+ T   IH  +
Sbjct: 283 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV 342

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K+G  F  + +V   L+  YAK   L+ A + F ++ + +V SW +II    +      
Sbjct: 343 IKHGLEF--DLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVT 400

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF---DGCVFVASS 222
           A   FV+MQ +G  PD   L ++             R+VHG++++ G+   D  V + ++
Sbjct: 401 AHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMED--VVIGNA 458

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE-- 280
           ++DMY K G L+ A KVF+ ++ ++V++WN++I GY QNGL  EAI V Y+M  E  E  
Sbjct: 459 VVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEV-YKMMEECKEII 517

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P + +  SIL A A++ AL +G + H   +   + LD  + + +I+ Y K G L DA  +
Sbjct: 518 PNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 577

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F ++ +   VTWN +I+ +   G      A   + ++   E +D         +  D V 
Sbjct: 578 FYQVPQESSVTWNAIISCHGIHGH-----AEKTLKLFG--EMLDEG-------VKPDHVT 623

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           + +LL+A +  G   E    F  MQ  GI P++  +  ++    R G +  A      ++
Sbjct: 624 FVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGF---IK 680

Query: 461 SLGVQPNLITWTTLI 475
            + +QP+   W  L+
Sbjct: 681 DMPLQPDASIWGALL 695


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 235/790 (29%), Positives = 389/790 (49%), Gaps = 118/790 (14%)

Query: 98   GQQIHARILK---NGDFFARNEYVETKLVVFYAKCD-ALDVASRLFCRLRVKNVFSWAAI 153
            G QIHA I K     D    N      L+  Y+ C  ++D A R+F  ++ +N  +W +I
Sbjct: 262  GMQIHAFICKLPCVSDMILSN-----VLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSI 316

Query: 154  IGLNCRVGLSEKALIGFVEMQEDGVS----PDNFVLPNVLKACGALGWVGFG--RAVHGY 207
            I + CR G +  A   F  MQ +GV     P+ + L +++ A  +L   G      +   
Sbjct: 317  ISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTR 376

Query: 208  VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267
            + K GF   ++V S+L++ + + G ++ A+ +F  M  RN V  N ++VG  +    EEA
Sbjct: 377  IEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEA 436

Query: 268  IRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK----QAHAVAVINGMELDNV-LGS 322
             +VF EM  + VE    S+  +LS       L EGK    + HA    +G+    + +G+
Sbjct: 437  AKVFKEMK-DLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGN 495

Query: 323  SIINFYSKVGLLEDAEVVFSRMVERDIVTW------------------------------ 352
            +++N Y K   +++A  VF  M  +D V+W                              
Sbjct: 496  ALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVP 555

Query: 353  -NLLIASYVQSGQS---------------------DVVVASSIVDMYAKCERIDNAKQVF 390
             N  + S + S  S                     DV V+++++ +YA+ + I+  ++VF
Sbjct: 556  SNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVF 615

Query: 391  NSIILRDVVLWNTLLAAYADLGRSG-EASRLFYQMQLEGISPNIISW------------- 436
              +   D V WN+ + A A    S  +A + F +M   G  PN +++             
Sbjct: 616  FQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVL 675

Query: 437  ----------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
                                  N+++  + +  QM + + +F +M     + + ++W ++
Sbjct: 676  GLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSE---RRDEVSWNSM 732

Query: 475  ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
            ISG   +   ++A+     M++ G K    T    LSAC  VA+L  G  +H   +R   
Sbjct: 733  ISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVR--A 790

Query: 535  CLPTPIV--TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
            CL + +V  ++LVDMYAKCG I  A R F++ P + +  +N+MISGYA HG   +AL +F
Sbjct: 791  CLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIF 850

Query: 593  KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
              ++Q G  PD +TF  +L+ACSH GLV+EG + F  M   + + P +EHF C+V+LL R
Sbjct: 851  TRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGR 910

Query: 653  CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN--ETELAEYISEHLLQLEPDNPGNYV 710
             G++ +    I TMP DP+  I  ++L  C ++N   TEL +  ++ L++LEP N  NYV
Sbjct: 911  AGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYV 970

Query: 711  ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
             LSN +AA G W +V + R  M++  ++K+ GCSW+ + + +H+FVA D++HP+ E+IY 
Sbjct: 971  LLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYE 1030

Query: 771  TLALLGMHVR 780
             L  L   +R
Sbjct: 1031 KLKELMNKIR 1040



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 163/679 (24%), Positives = 302/679 (44%), Gaps = 117/679 (17%)

Query: 95  MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII 154
           +Y    +H ++ K G  F  + +    L+  Y +   L  A +LF  +  KN+ SW+ +I
Sbjct: 156 LYDANHLHLQLYKTG--FTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLI 213

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG--FGRAVHGYVLKVG 212
               +  + ++A   F  +   G+ P++F + + L+AC   G  G   G  +H ++ K+ 
Sbjct: 214 SGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLP 273

Query: 213 FDGCVFVASSLIDMYGKC-GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
               + +++ L+ MY  C G +++A +VFD +  RN V WNS+I  Y + G    A ++F
Sbjct: 274 CVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLF 333

Query: 272 YEMTLEGVE----PTRVSVTSILSASANLD--ALDEGKQAHAVAVINGMELDNVLGSSII 325
             M +EGVE    P   ++ S+++A+ +L    L   +Q       +G   D  +GS+++
Sbjct: 334 SVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALV 393

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------------- 366
           N +++ GL++ A+++F +M +R+ VT N L+    +  Q +                   
Sbjct: 394 NGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSES 453

Query: 367 -VVVASSIVD------------------------------------MYAKCERIDNAKQV 389
            VV+ S+  +                                    MY KC  IDNA  V
Sbjct: 454 LVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSV 513

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFL 444
           F  +  +D V WN++++      R  EA   F+ M+  G+ P+  S  S +     LG+L
Sbjct: 514 FQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWL 573

Query: 445 RNGQ------------------------------MNEAKDMFLQMQSLGVQPNLITWTTL 474
             G+                              +NE + +F QM     + + ++W + 
Sbjct: 574 TLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMP----EYDQVSWNSF 629

Query: 475 ISGLTQNSCGN-EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           I  L +      +A+ +F EM++ G +P+  T    L+A +  + L  G  IH  ++++ 
Sbjct: 630 IGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYS 689

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALALF 592
           +     I  +L+  Y KC  +   + +F  +S  ++   +N+MISGY   G+  +A+ L 
Sbjct: 690 VADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLV 749

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH----FGCVVN 648
             + Q+G   D  TF  +L+AC+    +  G+E+         V+  +E        +V+
Sbjct: 750 WPMMQRGQKLDGFTFATVLSACASVATLERGMEVHAC-----AVRACLESDVVVGSALVD 804

Query: 649 LLSRCGNLDEALRVILTMP 667
           + ++CG +D A R    MP
Sbjct: 805 MYAKCGKIDYASRFFELMP 823



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 134/286 (46%), Gaps = 17/286 (5%)

Query: 34  RESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKR 93
           R  + S+ S+   Y H          + +A+DL+  M  R  ++    +  +L  C    
Sbjct: 723 RRDEVSWNSMISGYLHS-------GILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVA 775

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
            +  G ++HA  ++       +  V + LV  YAKC  +D ASR F  + V+N++SW ++
Sbjct: 776 TLERGMEVHACAVRAC--LESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSM 833

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-G 212
           I    R G  +KAL  F  M++ G SPD+     VL AC  +G V  G      + +V G
Sbjct: 834 ISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYG 893

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQ-NGLNEEAIRV 270
               +   S ++D+ G+ GD+++       M +  N++ W +++    + NG N E  + 
Sbjct: 894 LSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQR 953

Query: 271 FYEMTLEGVEPTR----VSVTSILSASANLDALDEGKQAHAVAVIN 312
             +M +E +EP      V ++++ +A  N + + E + A   A + 
Sbjct: 954 AAKMLIE-LEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVK 998



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 18/157 (11%)

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           +SL +   +H  L +           +L+++Y + GN+  A+++FD  P K L  ++ +I
Sbjct: 154 SSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLI 213

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           SGY  + +  EA +LFK +   G+ P+     + L AC   G  + G++L  GM    Q+
Sbjct: 214 SGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCG--STGIKL--GM----QI 265

Query: 637 KPSMEHFGCVVNLL---------SRC-GNLDEALRVI 663
              +    CV +++         S C G++D+A RV 
Sbjct: 266 HAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVF 302


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/619 (30%), Positives = 316/619 (51%), Gaps = 91/619 (14%)

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           M+ G+ + G        F E+   G  P   ++  ++ A  +L  L  G+  H +    G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------- 363
           ++LD+ + +++++ Y K   +EDA  +F +M ERD+VTW ++I  Y + G          
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 364 ------------------------------------------QSDVVVASSIVDMYAKCE 381
                                                     Q DV++ ++++DMYAKC 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +++A+++F+ +  ++V+ W+ ++AAY   G+  +A  LF  M   G+ P+ I+  S++ 
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 442 GF--LRNGQM---------------------------------NEAKDMFLQMQSLGVQP 466
               L+N QM                                  +A+ +F +M     + 
Sbjct: 241 ACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMP----ER 296

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
           +L+TWT +I G  +    NE+++ F +M E G+ P    +   + AC  + ++   R I 
Sbjct: 297 DLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTID 356

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
            Y+ R    L   + T+++DM+AKCG +  A+ +FD    K +  ++AMI+ Y  HG   
Sbjct: 357 DYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGR 416

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
           +AL LF  + + GI P+ IT  ++L ACSHAGLV EGL  F  M+ D+ V+  ++H+ CV
Sbjct: 417 KALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCV 476

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           V+LL R G LDEAL++I +M  + D  + G+ L  C    +  LAE  +  LL+L+P NP
Sbjct: 477 VDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNP 536

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTE 766
           G+Y+ LSN YA +GRW +V++ RD+M ++ L+K PG +WI++  + H F   D +HP+++
Sbjct: 537 GHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSK 596

Query: 767 EIYATLALLGMHVRLVSKV 785
           EIY  L  LG  + LV  V
Sbjct: 597 EIYEMLKSLGNKLELVGYV 615



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 236/463 (50%), Gaps = 55/463 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +++ C   +++  G+ IH  + K G     + +V   LV  Y KC  ++ A  LF +++ 
Sbjct: 36  VIRACRDLKNLQMGRLIHHIVYKFG--LDLDHFVCAALVDMYVKCREIEDARFLFDKMQE 93

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +++ +W  +IG     G + ++L+ F +M+E+GV PD   +  V+ AC  LG +   R +
Sbjct: 94  RDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARII 153

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
             Y+ +  F   V + +++IDMY KCG +E AR++FD M  +NV++W++MI  Y  +G  
Sbjct: 154 DDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQG 213

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
            +A+ +F  M   G+ P ++++ S+L A ++L  L  G+  H +    G++LD+ + +++
Sbjct: 214 RKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAAL 273

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------------- 363
           ++ Y K   +EDA  +F +M ERD+VTW ++I  Y + G                     
Sbjct: 274 VDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDK 333

Query: 364 -------------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNS 392
                                          Q DV++ ++++DM+AKC  +++A+++F+ 
Sbjct: 334 VAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDR 393

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
           +  ++V+ W+ ++AAY   G+  +A  LF  M   GI PN I+  S++      G + E 
Sbjct: 394 MEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEG 453

Query: 453 KDMF-LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
              F L  +   V+ ++  +T ++  L +    +EA+   + M
Sbjct: 454 LRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESM 496


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 204/687 (29%), Positives = 338/687 (49%), Gaps = 98/687 (14%)

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM- 243
           L ++L+ C     +   + VH  +L VG    V +  SLI++Y  C D   AR VF+ + 
Sbjct: 6   LLSLLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFENID 65

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEG 302
           I  +V  WNS++ GY +N +  + ++VF  +       P   +  +++ A   L     G
Sbjct: 66  IRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFLG 125

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           +  H V V +G   D V+ SS++  Y+K  L ED+  VF  M ERD+ +WN +I+S+ Q 
Sbjct: 126 RMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQR 185

Query: 363 GQS----------------------------------------------------DVVVA 370
           G +                                                    D  V 
Sbjct: 186 GDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVN 245

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           S++VDMY +C+ ++ A++VF  +  + +V WN+++  Y   G S     L  +M +EG  
Sbjct: 246 SALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTR 305

Query: 431 PNIISWNSVILG-----------------------------------FLRNGQMNEAKDM 455
           P+  +  S+++                                    + + G++  A+ +
Sbjct: 306 PSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETV 365

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGN--EAILFFQEMLETGIKPSTTTITCALSAC 513
           FL+ Q   V+    +W  +ISG    S GN  +A+  + +M+  G++P   T T  LS C
Sbjct: 366 FLKTQKDVVE----SWNVMISGYV--SVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTC 419

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
           + +A+L  G+ IH  +    L     ++++L+DMY+KCGN+ +A R+F+  P K++  + 
Sbjct: 420 SQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWT 479

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            MIS Y  HG   EAL  F  +Q+ G+ PD +TF  +L+AC HAGL++EG++ F  M S 
Sbjct: 480 VMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSK 539

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSLLSTCVKSNETELAE 692
           + ++ S+E + C++++L R G L EA  ++   P   D A ++ +L   C    +  L  
Sbjct: 540 YGIEASIEQYSCLIDILGRAGRLLEAYGILQQKPETRDNAELLSTLFCACCLHRDHLLGY 599

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
            I++ L++  PD+   Y  L N YA+   W+   +VR  MKE G+RK PGCSWI++ E++
Sbjct: 600 TIAKLLVEKYPDDASTYTVLFNLYASGESWDAAKRVRLKMKEVGMRKKPGCSWIEMNEKV 659

Query: 753 HVFVACDRSHPKTEEIYATLALLGMHV 779
             F A DRSHP+ E +Y  LALL  H+
Sbjct: 660 CHFFAEDRSHPQAENVYECLALLSGHM 686


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 194/589 (32%), Positives = 320/589 (54%), Gaps = 29/589 (4%)

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           L  C  L  V   + +H  +++      + +A  LI     C     A +VF+ +   NV
Sbjct: 26  LPKCANLNQV---KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNV 82

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
              NS+I  + QN    +A  VF EM   G+     +   +L A +    L   K  H  
Sbjct: 83  HLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNH 142

Query: 309 AVINGMELDNVLGSSIINFYSKVGLL--EDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
               G+  D  + +++I+ YS+ G L   DA  +F +M ERD V+WN ++   V++G+  
Sbjct: 143 IEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGE-- 200

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                           + +A+++F+ +  RD++ WNT+L  YA      +A  LF +M  
Sbjct: 201 ----------------LRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMP- 243

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                N +SW+++++G+ + G M  A+ MF +M       N++TWT +I+G  +     E
Sbjct: 244 ---ERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPA--KNVVTWTIIIAGYAEKGLLKE 298

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           A     +M+ +G+K     +   L+ACT+   L  G  IH  L R +L     ++ +L+D
Sbjct: 299 ADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLD 358

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MYAKCGN+ +A  VF+  P K+L  +N M+ G  +HG   EA+ LF  ++++GI PD +T
Sbjct: 359 MYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVT 418

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           F  +L +C+HAGL++EG++ F  M   + + P +EH+GC+V+LL R G L EA++V+ TM
Sbjct: 419 FIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTM 478

Query: 667 PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726
           P +P+  I G+LL  C   NE ++A+ + ++L++L+P +PGNY  LSN YAA+  W  V+
Sbjct: 479 PMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVA 538

Query: 727 QVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            +R  MK  G+ K  G S +++ + +H F   D+SHPK+++IY  L  L
Sbjct: 539 DIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSL 587



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/517 (26%), Positives = 238/517 (46%), Gaps = 74/517 (14%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
            I+ E LQ      ++   +Q+HA+I++       + ++  KL+   + C   ++A R+F
Sbjct: 17  RIFEERLQDLPKCANLNQVKQLHAQIIRRN--LHEDLHIAPKLISALSLCRQTNLAVRVF 74

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
            +++  NV    ++I  + +     +A   F EMQ  G+  DNF  P +LKAC    W+ 
Sbjct: 75  NQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLP 134

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL--EEARKVFDGMIARNVVAWNSMIVG 257
             + +H ++ K+G    ++V ++LID Y +CG L   +A K+F+ M  R+ V+WNSM+ G
Sbjct: 135 VVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGG 194

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ-AHAVAVINGM-E 315
            V+ G   +A R+F EM      P R     ++S +  LD     ++ + A  +   M E
Sbjct: 195 LVKAGELRDARRLFDEM------PQR----DLISWNTMLDGYARCREMSKAFELFEKMPE 244

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRM--VERDIVTWNLLIASYVQSG---------- 363
            + V  S+++  YSK G +E A V+F +M    +++VTW ++IA Y + G          
Sbjct: 245 RNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVD 304

Query: 364 ------------------------------------------QSDVVVASSIVDMYAKCE 381
                                                      S+  V ++++DMYAKC 
Sbjct: 305 QMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCG 364

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +  A  VFN I  +D+V WNT+L      G   EA  LF +M+ EGI P+ +++ +V+ 
Sbjct: 365 NLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLC 424

Query: 442 GFLRNGQMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
                G ++E  D F  M+ +  + P +  +  L+  L +     EAI   Q M    ++
Sbjct: 425 SCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTM---PME 481

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
           P+       L AC     +   + +   L++ D C P
Sbjct: 482 PNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDP 518



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 169/343 (49%), Gaps = 16/343 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +  L K  ++R+A  L  EM  R+       +  +L G    R+M    ++  ++
Sbjct: 187 SWNSMLGGLVKAGELRDARRLFDEMPQRDLIS----WNTMLDGYARCREMSKAFELFEKM 242

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR--LRVKNVFSWAAIIGLNCRVGLS 163
            +      RN    + +V+ Y+K   +++A  +F +  L  KNV +W  II      GL 
Sbjct: 243 PE------RNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLL 296

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
           ++A     +M   G+  D   + ++L AC   G +  G  +H  + +       +V ++L
Sbjct: 297 KEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNAL 356

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           +DMY KCG+L++A  VF+ +  +++V+WN+M+ G   +G  +EAI +F  M  EG+ P +
Sbjct: 357 LDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDK 416

Query: 284 VSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA-EVVF 341
           V+  ++L +  +   +DEG    +++  +  +         +++   +VG L++A +VV 
Sbjct: 417 VTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQ 476

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
           +  +E ++V W  L+ +     + D  +A  ++D   K +  D
Sbjct: 477 TMPMEPNVVIWGALLGACRMHNEVD--IAKEVLDNLVKLDPCD 517


>gi|15228117|ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37310
 gi|4056485|gb|AAC98051.1| hypothetical protein [Arabidopsis thaliana]
 gi|110741249|dbj|BAF02175.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254288|gb|AEC09382.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 218/702 (31%), Positives = 343/702 (48%), Gaps = 108/702 (15%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARI----LKNGDFFARNEYVETKLVVFYAKCDALDVASR 137
           YG L+Q     R      Q+HARI    +K  +F A      +KL+ FY + D    A  
Sbjct: 25  YGHLIQHFTRHRLPLHVLQLHARIVVFSIKPDNFLA------SKLISFYTRQDRFRQALH 78

Query: 138 LFCRLRVKNVFSW-AAIIGLNCRVGLSEK-----ALIGFVEMQEDGVSPDNFVLPNVLKA 191
           +F  + V+N FS+ A +I    R    +      + IG      D   PD+  +  VLKA
Sbjct: 79  VFDEITVRNAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKA 138

Query: 192 CGALG--WVG-FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
                  W+G   R VHG+V++ GFD  VFV + +I  Y KC ++E ARKVFD M  R+V
Sbjct: 139 LSGCDDFWLGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDV 198

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           V+WNSMI GY Q+G  E+  +++  M      +P  V+V S+  A      L  G + H 
Sbjct: 199 VSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHK 258

Query: 308 VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
             + N +++D  L +++I FY+K G L+ A  +F  M E+D VT+  +I+ Y+  G    
Sbjct: 259 KMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKE 318

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
            +A                                                 LF +M+  
Sbjct: 319 AMA-------------------------------------------------LFSEMESI 329

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
           G+S    +WN++I G ++N    E  + F +M   G +PN +T ++L+  LT +S     
Sbjct: 330 GLS----TWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSS----- 380

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
                                         +L+ G+ IH + IR+       + TS++D 
Sbjct: 381 ------------------------------NLKGGKEIHAFAIRNGADNNIYVTTSIIDN 410

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           YAK G +  A+RVFD    + L  + A+I+ YA+HG +  A +LF  +Q  G  PD +T 
Sbjct: 411 YAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTL 470

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
           T +L+A +H+G  +    +F  M + + ++P +EH+ C+V++LSR G L +A+  I  MP
Sbjct: 471 TAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISKMP 530

Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
            DP A + G+LL+      + E+A +  + L ++EP+N GNY  ++N Y  +GRW E   
Sbjct: 531 IDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEM 590

Query: 728 VRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           VR+ MK  GL+K PG SWI+  + L  F+A D S  +++E+Y
Sbjct: 591 VRNKMKRIGLKKIPGTSWIETEKGLRSFIAKDSSCERSKEMY 632



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 157/343 (45%), Gaps = 50/343 (14%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ S+   Y  Q  S    K++ +A+     + C +F+        + Q C    D+  G
Sbjct: 200 SWNSMISGY-SQSGSFEDCKKMYKAM-----LACSDFKPNGVTVISVFQACGQSSDLIFG 253

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
            ++H ++++N      +  +   ++ FYAKC +LD A  LF  +  K+  ++ AII    
Sbjct: 254 LEVHKKMIEN--HIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYM 311

Query: 159 RVGLSEKALIGFVEMQEDGVS-------------------------------PDNFVLPN 187
             GL ++A+  F EM+  G+S                               P+   L +
Sbjct: 312 AHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSS 371

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           +L +      +  G+ +H + ++ G D  ++V +S+ID Y K G L  A++VFD    R+
Sbjct: 372 LLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRS 431

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           ++AW ++I  Y  +G ++ A  +F +M   G +P  V++T++LSA A+      G    A
Sbjct: 432 LIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAH-----SGDSDMA 486

Query: 308 VAVINGM--ELDNVLG----SSIINFYSKVGLLEDAEVVFSRM 344
             + + M  + D   G    + +++  S+ G L DA    S+M
Sbjct: 487 QHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISKM 529


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/564 (33%), Positives = 309/564 (54%), Gaps = 65/564 (11%)

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE- 265
           Y+ K      +F  + +I    + GD++ A +VF GM A+N + WNS+++G  ++     
Sbjct: 51  YLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMM 110

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           EA ++F E+     EP   S   +LS                  V N            +
Sbjct: 111 EAHQLFDEIP----EPDTFSYNIMLSCY----------------VRN------------V 138

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDN 385
           NF       E A+  F RM  +D  +WN +I  Y + G+                  ++ 
Sbjct: 139 NF-------EKAQSFFDRMPFKDAASWNTMITGYARRGE------------------MEK 173

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A+++F S++ ++ V WN +++ Y + G   +AS  F    + G+    ++W ++I G+++
Sbjct: 174 ARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGV----VAWTAMITGYMK 229

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
             ++  A+ MF   + + V  NL+TW  +ISG  +NS   + +  F+ MLE GI+P+++ 
Sbjct: 230 AKKVELAEAMF---KDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSG 286

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           ++ AL  C+++++L+ GR IH  + +  LC     +TSL+ MY KCG +  A ++F++  
Sbjct: 287 LSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK 346

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            K++  +NAMISGYA HG A +AL LF+ +    I PD ITF  +L AC+HAGLVN G+ 
Sbjct: 347 KKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMA 406

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
            F  M  D++V+P  +H+ C+V+LL R G L+EAL++I +MP  P A + G+LL  C   
Sbjct: 407 YFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVH 466

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
              ELAE+ +E LLQL   N   YV L+N YA+  RW +V++VR  MKE  + K PG SW
Sbjct: 467 KNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSW 526

Query: 746 IQIGEELHVFVACDRSHPKTEEIY 769
           I+I  ++H F + DR HP+ + I+
Sbjct: 527 IEIRNKVHHFRSSDRIHPELDSIH 550



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y +    + A   F R+  K+  SW  +I    R G  EKA   F  M E      N ++
Sbjct: 134 YVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMI 193

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-I 244
              ++ CG L      +A H +  KV     V   +++I  Y K   +E A  +F  M +
Sbjct: 194 SGYIE-CGDLE-----KASHFF--KVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTV 245

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            +N+V WN+MI GYV+N   E+ +++F  M  EG+ P    ++S L   + L AL  G+Q
Sbjct: 246 NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQ 305

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            H +   + +  D    +S+I+ Y K G L DA  +F  M ++D+V WN +I+ Y Q G 
Sbjct: 306 IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGN 365

Query: 365 SD 366
           +D
Sbjct: 366 AD 367



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 1/174 (0%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRV-KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
           T ++  Y K   +++A  +F  + V KN+ +W A+I         E  L  F  M E+G+
Sbjct: 221 TAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGI 280

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
            P++  L + L  C  L  +  GR +H  V K      V   +SLI MY KCG+L +A K
Sbjct: 281 RPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWK 340

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           +F+ M  ++VVAWN+MI GY Q+G  ++A+ +F EM    + P  ++  ++L A
Sbjct: 341 LFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLA 394


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/586 (32%), Positives = 325/586 (55%), Gaps = 40/586 (6%)

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           F R  H   +K+     V+  +  I    + G++  AR++FD M  R+ V+WNS+I GY 
Sbjct: 30  FNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYW 89

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTR--VSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           +NG  +E+ R+F      G+ PT+  VS  S+++     + +DE  Q             
Sbjct: 90  KNGCFDESKRLF------GLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASW 143

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
           N + S ++  Y +V   E+A  +F  M  R+++++                  +++VD Y
Sbjct: 144 NAMISGLVR-YDRV---EEASRLFEEMPRRNVISY------------------TAMVDGY 181

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           AK   I+ A+ +FN +  ++VV W  +++ Y + G+  EA  LF QM       NI++  
Sbjct: 182 AKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMP----DKNIVAMT 237

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           ++I G+ + G+ ++AK +F Q+       +L +W  +I+G  QN  G EA+    +ML+ 
Sbjct: 238 AMITGYCKEGKTDKAKILFDQIPCR----DLASWNAMITGYAQNGSGEEALKLHSQMLKM 293

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           G++P  +T+   L+AC+ +ASL+ GR  H  +++        I  +L+ MY KCG+I  +
Sbjct: 294 GMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDS 353

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           +  F      ++  +NAMI+ +A HG    ALA F  ++   ++PD ITF ++L+AC HA
Sbjct: 354 ELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHA 413

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           G V+E L  F  M   +++ P  EHF C+V++LSR G +++A ++I  MP + D  I G+
Sbjct: 414 GKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGA 473

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           LL+ C      +L E  ++ +++LEP N G YV LSN YAA+G W EV++VR +M+E+G+
Sbjct: 474 LLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGV 533

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVS 783
           +K P  SW++I  ++H F+  D SHP+   I   L L GM +++++
Sbjct: 534 KKQPAYSWMEIDNKVHFFLGDDASHPEIHRI--RLELKGMKLQMIA 577



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 164/354 (46%), Gaps = 51/354 (14%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRN----------------FQIGPEIYGEL-LQGCVYK 92
           QI +L++   I  A  L  EM  R+                F     ++G +  +  V  
Sbjct: 53  QIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSW 112

Query: 93  RDMYTGQQIHARILKNGDFFA----RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVF 148
             M  G     RI +   +F     RN      ++    + D ++ ASRLF  +  +NV 
Sbjct: 113 NSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVI 172

Query: 149 SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208
           S+ A++    ++G  E+A   F  M +  V                   V +   + GYV
Sbjct: 173 SYTAMVDGYAKIGEIEQARALFNCMPQKNV-------------------VSWTVMISGYV 213

Query: 209 LKVGFDGC-----------VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
               FD             +   +++I  Y K G  ++A+ +FD +  R++ +WN+MI G
Sbjct: 214 ENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITG 273

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           Y QNG  EEA+++  +M   G++P   ++ S+L+A ++L +L EG++ H + + +G E  
Sbjct: 274 YAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESR 333

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVAS 371
             + +++I  Y K G + D+E+ F ++   D+V+WN +IA++ + G  D  +AS
Sbjct: 334 ISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALAS 387



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 159/341 (46%), Gaps = 33/341 (9%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNF-----------QIGPEIYGELLQGCVYKRD 94
           S+   IS L +  ++ EA  L  EM  RN            +IG       L  C+ +++
Sbjct: 142 SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKN 201

Query: 95  MYTGQQIHARILKNGDFFARNEYVE----------TKLVVFYAKCDALDVASRLFCRLRV 144
           + +   + +  ++NG F       E          T ++  Y K    D A  LF ++  
Sbjct: 202 VVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPC 261

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +++ SW A+I    + G  E+AL    +M + G+ PD+  L +VL AC +L  +  GR  
Sbjct: 262 RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKT 321

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H  VLK G++  + + ++LI MY KCG + ++   F  +   +VV+WN+MI  + ++G  
Sbjct: 322 HVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFY 381

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM-ELDNVLG-- 321
           + A+  F EM    VEP  ++  S+LSA  +      GK   ++   N M E   ++   
Sbjct: 382 DRALASFGEMRSNRVEPDGITFLSLLSACGH-----AGKVHESLNWFNSMIESYKIVPRP 436

Query: 322 ---SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
              + +++  S+ G +E A  +   M  E D   W  L+A+
Sbjct: 437 EHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAA 477


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/668 (29%), Positives = 347/668 (51%), Gaps = 73/668 (10%)

Query: 180 PDNFVLP---NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           P+N VL    ++L+ C         + +H  ++  G     F+A+ ++ +Y   G + +A
Sbjct: 29  PNNDVLDFFNDLLQQCSK---SHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDA 85

Query: 237 RKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           ++VF+        N++ WNS++   V +G  EEA+ ++  M   GV     +   ++ A 
Sbjct: 86  QRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRAC 145

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A + +    +  H   V  G + +  +G+ ++  Y K+G ++DA  VF RM  R  V+WN
Sbjct: 146 ALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWN 205

Query: 354 LLIASYV----------------QSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
            +++ Y                  +G + ++V  +S++  +A+C +     ++F  + +R
Sbjct: 206 TMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMR 265

Query: 397 DV---------------------------------------VLWNTLLAAYADLGRSGEA 417
            +                                        + N+L+  Y   G    A
Sbjct: 266 GIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAA 325

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG----VQPNLITWTT 473
             LF +++    + NI+SWN++I  +   G  +EA  +FLQ++       V+PN+++W+ 
Sbjct: 326 RILFLEIK----TKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSA 381

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +I G      G EA+  F+ M    +K ++ TI   LS C ++A+L  GR IHG+++R  
Sbjct: 382 VIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSL 441

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
           +     +   L++MY K G+  +   VF+   +K+L  +N M++GY +HGL   A+  F 
Sbjct: 442 MDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFD 501

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            + + G +PD +TF  +L+ACSHAGLV EG ELF  M  + +V+P MEH+ C+V+LL R 
Sbjct: 502 QMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRA 561

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G L EA +V+ +MP +P+A + G+LL++C     TE+AE  +  +  L  +  G+Y+ LS
Sbjct: 562 GLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLS 621

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           N YAASGRW + ++VR   K KGL+K PG SWIQ+ +++++F A +  H + EE+Y  L 
Sbjct: 622 NIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILK 681

Query: 774 LLGMHVRL 781
            LG+ + +
Sbjct: 682 DLGLQMEV 689



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 154/578 (26%), Positives = 267/578 (46%), Gaps = 94/578 (16%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           + + +LLQ C      +  QQIH++I+  G    R+ ++  ++V  YA    +  A R+F
Sbjct: 35  DFFNDLLQQC---SKSHLSQQIHSQIIVTGSH--RSAFLAARVVSVYAGFGLVSDAQRVF 89

Query: 140 CRLRVK---NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
               ++   N+  W +I+  N   G  E+AL  +  M++ GVS D F  P V++AC  +G
Sbjct: 90  EVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMG 149

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
                R+VHG+V+++GF   + V + L+ MYGK G +++ARKVF+ M  R+ V+WN+M+ 
Sbjct: 150 SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVS 209

Query: 257 GYVQN-----------------------------------GLNEEAIRVFYEMTLEGVEP 281
           GY  N                                   G + E + +F  M + G+  
Sbjct: 210 GYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGA 269

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
           T  ++  +LS S +L A DEGK  H   V  G E    + +S+I  Y K G +  A ++F
Sbjct: 270 TAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILF 329

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
             +  ++IV+WN LI+SY   G  D   A     ++ + E+ D        ++  +VV W
Sbjct: 330 LEIKTKNIVSWNALISSYADLGWCDEAFA-----IFLQLEKTDEY-----PMVRPNVVSW 379

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LG--------- 442
           + ++  +A  G+  EA  LF +MQL  +  N ++  SV+          LG         
Sbjct: 380 SAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVR 439

Query: 443 ----------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                           + ++G   E   +F ++++     +LI+W T+++G   +  G  
Sbjct: 440 SLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIEN----KDLISWNTMVAGYGIHGLGEN 495

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT-PIVTSLV 545
           AI  F +M++ G +P   T    LSAC+    +  GR +   +I+     P       +V
Sbjct: 496 AIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMV 555

Query: 546 DMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMH 582
           D+  + G + +A +V    P +    V+ A+++   MH
Sbjct: 556 DLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMH 593



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 212/475 (44%), Gaps = 78/475 (16%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +SS ++  Q  E ++L   M+ R      E    +L   V       G+ IH  ++K G 
Sbjct: 243 LSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGG- 301

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN------------------------ 146
            F    +V+  L+  Y K   ++ A  LF  ++ KN                        
Sbjct: 302 -FENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIF 360

Query: 147 ---------------VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
                          V SW+A+IG     G  E+AL  F  MQ   V  ++  + +VL  
Sbjct: 361 LQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSV 420

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C  L  +  GR +HG+V++   DG + V + LI+MY K G  +E   VF+ +  +++++W
Sbjct: 421 CAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISW 480

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N+M+ GY  +GL E AIR F +M  +G EP  V+  ++LSA ++   + EG++     +I
Sbjct: 481 NTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFD-KMI 539

Query: 312 NGMELDNVLG--SSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDVV 368
               ++  +   + +++   + GLL++A +VV S  VE +   W  L+ S      ++V 
Sbjct: 540 KEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVA 599

Query: 369 VASSIVDMYAKCERIDNAKQVF--NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                          + A Q+F  NS I    +L + +   YA  GR  +++++    + 
Sbjct: 600 E--------------ETASQIFNLNSEIAGSYMLLSNI---YAASGRWEDSAKVRISAKT 642

Query: 427 EGI--SPNIISWNSV-------ILGFLRNGQMNEA----KDMFLQMQSLGVQPNL 468
           +G+  +P   SW  V         G  ++ ++ E     KD+ LQM+  G  P++
Sbjct: 643 KGLKKTPG-QSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYIPDI 696


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/616 (32%), Positives = 314/616 (50%), Gaps = 98/616 (15%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R  H  +L +G     F+A+ LI  Y  C     +R VFD +  +NV  WNS+I G V+N
Sbjct: 43  RQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGCVKN 102

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
            L  EA ++F +M    V P   +++++   S+ L AL  GK  H  ++  G        
Sbjct: 103 RLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGF------- 155

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
                                                      SD VVA+SI+ MY KC 
Sbjct: 156 ------------------------------------------VSDTVVANSIMSMYCKCG 173

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG---EASRLFYQMQLEGISPNIIS--- 435
             D +++VF+ + +R+   WN L+A YA  G      E      QMQ++ + P+  +   
Sbjct: 174 NFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISS 233

Query: 436 -----------W------------NSVILG--------------FLRNGQMNEAKDMFLQ 458
                      W            N ++LG              + R+ ++   + +F +
Sbjct: 234 LLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDR 293

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVA 517
           M+      N+ +WT +I+G  +N   +EA+  F++M +  G++P+  ++   L AC+  +
Sbjct: 294 MKC----RNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFS 349

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMI 576
            L +GR IHG+ +R +L     +  +L+DMY+KCG++  A+RVF D S  K+   +++MI
Sbjct: 350 GLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMI 409

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           SGY +HG   EA+ L+  + Q GI PD IT   IL+AC  +GLVNEGL ++  + +D+ +
Sbjct: 410 SGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGI 469

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
           +P++E   C+V++L R G LD AL  I  +P +P   + G+L+S  +   + E+ E    
Sbjct: 470 EPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVSCSIIHGDLEMQELAYR 529

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
            L+QLEP NP NYV++SN YA+S RW+ V++VR +MK+K LRK PGCSWI I  + H F 
Sbjct: 530 FLIQLEPKNPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINNKTHCFY 589

Query: 757 ACDRSHPKTEEIYATL 772
             D++HP +  IY  L
Sbjct: 590 VADKAHPSSTSIYNML 605



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 150/573 (26%), Positives = 268/573 (46%), Gaps = 79/573 (13%)

Query: 75  FQIGPEIYGELLQG---CVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131
           F+  P +   LLQ     V  + +   +Q H+RIL  G   ++N ++ TKL+  YA C  
Sbjct: 18  FEFDPSL--ALLQSLHFSVTHKSLKLTRQSHSRILSLG--LSQNSFLATKLIFAYAICQH 73

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
              +  +F  L+ KNVF W ++I    +  L  +A   F +M    V PD+F L  + K 
Sbjct: 74  PYHSRLVFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKV 133

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
              LG +  G+++HG  ++ GF     VA+S++ MY KCG+ +E+RKVFD M  RN  +W
Sbjct: 134 SSELGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSW 193

Query: 252 NSMIVGYVQNG---LNEEAIRVFYEMTLEGVEPTRVSVTSILS-ASANLDALDEGKQAHA 307
           N +I GY  +G     EE      +M ++ V P   +++S+L     ++   D G++ H 
Sbjct: 194 NVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHC 253

Query: 308 VAVIN----GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
             V N    G++ D  LG  +I+ YS+   +     VF RM  R++ +W  +I  YV++G
Sbjct: 254 YIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENG 313

Query: 364 QSDVVVA---------------SSIVDMYAKCERID---NAKQVFNSIILR----DVVLW 401
            SD  ++                S+V +   C       + +Q+    + +    +V L 
Sbjct: 314 DSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLC 373

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
           N L+  Y+  G    A R+F   + + +  + ISW+S+I G+  +G+  EA  ++ +M  
Sbjct: 374 NALIDMYSKCGSLDSARRVF---EDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQ 430

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTITCALSACTDVASLR 520
            G++P++IT   ++S   ++   NE +  +  ++ + GI+P+     C            
Sbjct: 431 AGIRPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICAC------------ 478

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP-VYNAMISGY 579
                                  +VDM  + G + +A       P +  P V+ A++S  
Sbjct: 479 -----------------------IVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVSCS 515

Query: 580 AMHG-LAVEALALFKNLQQKGIDPDS-ITFTNI 610
            +HG L ++ LA    +Q +  +P + ++ +N+
Sbjct: 516 IIHGDLEMQELAYRFLIQLEPKNPSNYVSISNL 548



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           SL+  R  H  ++   L   + + T L+  YA C + + ++ VFD    K + ++N++I+
Sbjct: 38  SLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLIN 97

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFS 632
           G   + L  EA  LF  +    + PD  T + +    S  G +  G  +       G  S
Sbjct: 98  GCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVS 157

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           D  V  S+    C      +CGN DE+ +V   M
Sbjct: 158 DTVVANSIMSMYC------KCGNFDESRKVFDEM 185


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 201/639 (31%), Positives = 316/639 (49%), Gaps = 85/639 (13%)

Query: 209 LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
           L +  D C FV S L         +  A  +F+ M   +   WN +I GY  NGL +EAI
Sbjct: 59  LNITRDLCGFVESGL---------MGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAI 109

Query: 269 RVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328
             +Y M  EG+     +   ++ A   L AL  G++ H   +  G +LD  + + +I+ Y
Sbjct: 110 DFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMY 169

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS----------------------- 365
            K+G +E AE VF  M  RD+V+WN +++ Y   G                         
Sbjct: 170 LKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMI 229

Query: 366 -----------------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
                                        D++V +S++DMY KC ++D A++VFN I  +
Sbjct: 230 SALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSK 289

Query: 397 DVVLWNTLLAAYAD--------------LGRSGEASRLFYQMQLEGIS------PNIISW 436
           ++V WN ++    +              L    ++  L     + G +      P ++  
Sbjct: 290 NIVAWNAMIGGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLE 349

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
            +++  + + G++  A+ +F QM     + N+++W T+++   QN    EA+  FQ +L 
Sbjct: 350 TALVDMYGKCGELKLAEHVFNQMN----EKNMVSWNTMVAAYVQNEQYKEALKMFQHILN 405

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
             +KP   TI   L A  ++AS   G+ IH Y+++  L   T I  ++V MYAKCG++  
Sbjct: 406 EPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQT 465

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A+  FD    K++  +N MI  YA+HG    ++  F  ++ KG  P+  TF ++L ACS 
Sbjct: 466 AREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSI 525

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
           +GL++EG   F  M  ++ + P +EH+GC+++LL R GNLDEA   I  MP  P A I G
Sbjct: 526 SGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWG 585

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           SLL+     N+  LAE  + H+L L+ DN G YV LSN YA +GRW +V +++ +MKE+G
Sbjct: 586 SLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQG 645

Query: 737 LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           L K  GCS + I      F+  DRSH  T  IY  L +L
Sbjct: 646 LVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLDIL 684



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/505 (28%), Positives = 237/505 (46%), Gaps = 73/505 (14%)

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
           +ALD    +F ++   + F W  II      GL ++A+  +  M+ +G+  DNF  P V+
Sbjct: 76  NALD----MFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVI 131

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV 249
           KACG L  +  G+ VHG ++K+GFD  V+V + LIDMY K G +E A KVFD M  R++V
Sbjct: 132 KACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLV 191

Query: 250 AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVA 309
           +WNSM+ GY  +G    ++  F EM   G +  R  + S L A +    L  G + H   
Sbjct: 192 SWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQV 251

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA------------ 357
           + + +ELD ++ +S+I+ Y K G ++ AE VF+R+  ++IV WN +I             
Sbjct: 252 IRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIPDV 311

Query: 358 --------SYVQSGQ-----------------SDVVVASSIVDMYAKCERIDNAKQVFNS 392
                   S  QSG                    +V+ +++VDMY KC  +  A+ VFN 
Sbjct: 312 ITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQ 371

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
           +  +++V WNT++AAY    +  EA ++F  +  E + P+ I+  SV+         +E 
Sbjct: 372 MNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEG 431

Query: 453 KDMFLQMQSLGVQPN-------------------------------LITWTTLISGLTQN 481
           K +   +  LG+  N                               +++W T+I     +
Sbjct: 432 KQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIH 491

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL-IRHDLCLPTPI 540
             G  +I FF EM   G KP+ +T    L+AC+    +  G      + + + +      
Sbjct: 492 GFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEH 551

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISP 565
              ++D+  + GN+ +AK   +  P
Sbjct: 552 YGCMLDLLGRNGNLDEAKCFIEEMP 576



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/554 (25%), Positives = 260/554 (46%), Gaps = 74/554 (13%)

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
            +EA+D    M+C   +     +  +++ C     +  GQ++H +++K G  F  + YV 
Sbjct: 105 FQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIG--FDLDVYVC 162

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
             L+  Y K   +++A ++F  + V+++ SW +++      G    +L+ F EM   G  
Sbjct: 163 NFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNK 222

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
            D F + + L AC     +  G  +H  V++   +  + V +SLIDMYGKCG ++ A +V
Sbjct: 223 ADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERV 282

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F+ + ++N+VAWN+MI      G+ E+          + V P  +++ ++L + +   AL
Sbjct: 283 FNRIYSKNIVAWNAMI-----GGMQED----------DKVIPDVITMINLLPSCSQSGAL 327

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
            EGK  H  A+        VL +++++ Y K G L+ AE VF++M E+++V+WN ++A+Y
Sbjct: 328 LEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAY 387

Query: 360 VQSGQ----------------------------------------------------SDV 367
           VQ+ Q                                                    S+ 
Sbjct: 388 VQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNT 447

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
            ++++IV MYAKC  +  A++ F+ ++ +DVV WNT++ AYA  G    + + F +M+ +
Sbjct: 448 FISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGK 507

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLTQNSCGNE 486
           G  PN  ++ S++     +G ++E    F  M+   G+ P +  +  ++  L +N   +E
Sbjct: 508 GFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDE 567

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           A  F +EM          ++  A     DV  L    A H   ++HD    T     L +
Sbjct: 568 AKCFIEEMPLVPTARIWGSLLAASRNHNDVV-LAELAARHILSLKHD---NTGCYVLLSN 623

Query: 547 MYAKCGNIHQAKRV 560
           MYA+ G      R+
Sbjct: 624 MYAEAGRWEDVDRI 637



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 170/356 (47%), Gaps = 29/356 (8%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL  C     +  G+ IH   ++    F     +ET LV  Y KC  L +A  +F ++  
Sbjct: 317 LLPSCSQSGALLEGKSIHGFAIRK--MFLPYLVLETALVDMYGKCGELKLAEHVFNQMNE 374

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           KN+ SW  ++    +    ++AL  F  +  + + PD   + +VL A   L     G+ +
Sbjct: 375 KNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQI 434

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H Y++K+G     F++++++ MY KCGDL+ AR+ FDGM+ ++VV+WN+MI+ Y  +G  
Sbjct: 435 HSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFG 494

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
             +I+ F EM  +G +P   +  S+L+A +    +DEG         N M+++  +   I
Sbjct: 495 RTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEG-----WGFFNSMKVEYGIDPGI 549

Query: 325 ------INFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
                 ++   + G L++A+     M +      W  L+A+      +DVV+A       
Sbjct: 550 EHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAA--SRNHNDVVLA------- 600

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
                 + A +   S+   +   +  L   YA+ GR  +  R+ Y M+ +G+   +
Sbjct: 601 ------ELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTV 650



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 15/238 (6%)

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
           PN ++    + GF+ +G M  A DMF +M       +   W  +I G T N    EAI F
Sbjct: 56  PNDLNITRDLCGFVESGLMGNALDMFEKMN----HSDTFIWNVIIRGYTNNGLFQEAIDF 111

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           +  M   GI+    T    + AC ++ +L  G+ +HG LI+    L   +   L+DMY K
Sbjct: 112 YYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLK 171

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
            G I  A++VFD  P ++L  +N+M+SGY + G  + +L  FK + + G   D     + 
Sbjct: 172 IGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISA 231

Query: 611 LNACSHAGLVNEGLELFVGMFS-----DHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
           L ACS    +  G+E+   +       D  V+ S+      +++  +CG +D A RV 
Sbjct: 232 LGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSL------IDMYGKCGKVDYAERVF 283


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 203/577 (35%), Positives = 300/577 (51%), Gaps = 64/577 (11%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCG-----DLEEARKVFDGMIARNVVAWNSMIV 256
           +  H  +L+ G     ++A SL+  Y           E + +VFD +   NV  WN MI 
Sbjct: 52  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
             ++N    +AI ++YEM +    P + +  ++L A ++   + EG Q HA  V +G+  
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGG 171

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
           D  + SS I  Y+           F R+VE                       A  I+D 
Sbjct: 172 DGHILSSAIRMYAS----------FGRLVE-----------------------ARRILD- 197

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
                  D   +V       D V WN ++  Y   G    A  LF  M    +   I +W
Sbjct: 198 -------DKGGEV-------DAVCWNAMIDGYLRFGEVEAARELFEGMPDRSM---ISTW 240

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           N++I GF R G +  A++ F +M+    + + I+W+ +I G  Q  C  EA+  F +M +
Sbjct: 241 NAMISGFSRCGMVEVAREFFDEMK----ERDEISWSAMIDGYIQEGCFMEALEIFHQMQK 296

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
             I+P    +   LSAC ++ +L  GR IH Y  R+ + L   + TSLVDMYAKCG I  
Sbjct: 297 EKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDL 356

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A  VF+   +KE+  +NAMI G AMHG A +A+ LF  +    I P+ ITF  +LNAC+H
Sbjct: 357 AWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAH 413

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            GLV +GL +F  M  ++ V+P +EH+GC+V+LL R G L EA +V+ ++P +P   + G
Sbjct: 414 GGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWG 473

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +LL  C K    EL E + + LL+LEP N G Y  LSN YA +GRW EV +VR +MKE+G
Sbjct: 474 ALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERG 533

Query: 737 LRKNPGCSWIQIGE-ELHVFVACDRSHPKTEEIYATL 772
           ++  PG S I +G  E+H F+  D SHP+ ++IY  L
Sbjct: 534 IKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQML 570



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 202/453 (44%), Gaps = 92/453 (20%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCD-----ALDVASRLFCRLRVKNVFSWAAI 153
           +Q HA IL+ G    ++ Y+   LV  YA        + + + R+F  +R  NVF W  +
Sbjct: 52  KQAHALILRTGHL--QDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCM 109

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I +        KA++ + EM      P+ +  P VLKAC   G V  G  VH +++K G 
Sbjct: 110 IKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGL 169

Query: 214 DGCVFVASSLIDMYG--------------------------------KCGDLEEARKVFD 241
            G   + SS I MY                                 + G++E AR++F+
Sbjct: 170 GGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFE 229

Query: 242 GMIARNVVA-WNSMIV-------------------------------GYVQNGLNEEAIR 269
           GM  R++++ WN+MI                                GY+Q G   EA+ 
Sbjct: 230 GMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALE 289

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329
           +F++M  E + P +  + S+LSA ANL ALD+G+  H  A  N ++LD VLG+S+++ Y+
Sbjct: 290 IFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYA 349

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQV 389
           K G ++ A  VF +M  +++ +WN +I      G+     A   +D+++K +        
Sbjct: 350 KCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGR-----AEDAIDLFSKMD-------- 396

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQ 448
               I  + + +  +L A A  G   +   +F  M+ E G+ P I  +  ++    R G 
Sbjct: 397 ----IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGL 452

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
           + EA+ +   + S+  +P    W  L+    ++
Sbjct: 453 LTEAEKV---VSSIPTEPTPAVWGALLGACRKH 482



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 169/356 (47%), Gaps = 58/356 (16%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++  +++C  ++VA   F  ++ ++  SW+A+I    + G   +AL  F +MQ++ + P 
Sbjct: 243 MISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPR 302

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSLIDMYGKCGDLEEARKV 239
            FVLP+VL AC  LG +  GR +H Y  +  +  DG   + +SL+DMY KCG ++ A +V
Sbjct: 303 KFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDG--VLGTSLVDMYAKCGRIDLAWEV 360

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F+ M  + V +WN+MI G   +G  E+AI +F +M    + P  ++   +L+A A+   +
Sbjct: 361 FEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAHGGLV 417

Query: 300 DEGKQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDAEVVFSRM-VERDIVTW 352
            +G     + + N M  +  +         I++   + GLL +AE V S +  E     W
Sbjct: 418 QKG-----LTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVW 472

Query: 353 NLLIASYVQSGQSDV--VVASSIVDM--------------YAKCERIDNAKQVFNSIILR 396
             L+ +  + G  ++   V   ++++              YAK  R +   +V    +++
Sbjct: 473 GALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRK--LMK 530

Query: 397 DVVLWNTLLAAYADLGRSGEASRL------------FYQM--------QLEGISPN 432
           +  +  T   +  DLGR GE  +              YQM        Q+EG  P+
Sbjct: 531 ERGIKTTPGTSIIDLGR-GEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPD 585


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 200/702 (28%), Positives = 355/702 (50%), Gaps = 101/702 (14%)

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASSLIDMYGK 229
           +++++  V  +N     +L+ C     +  GR +H   +K     G + + + ++ MY  
Sbjct: 32  LDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAH 91

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           C    +A+  FD +  RN+ +W  ++  +  +G ++E +R    M  +GV P  V+  + 
Sbjct: 92  CDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITA 151

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE-RD 348
           L +  + ++L +G + H + V + +E+D  + ++++N Y K G L  A+ VF++M   R+
Sbjct: 152 LGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRN 211

Query: 349 IVTWNLLIASY----------------------------------------VQSG----- 363
           +++W+++  ++                                        VQ G     
Sbjct: 212 VISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHS 271

Query: 364 -------QSDVVVASSIVDMYAKCERIDNAKQVFNSI--ILRDVVLWNTLLAAYADLGRS 414
                  +S+++VA++++ MY +C  ++ A++VF+++   LRDVV WN +L+AY    R 
Sbjct: 272 CIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRG 331

Query: 415 GEASRLFYQMQLEG--------------------------------ISPNIISWNSVILG 442
            +A +L+ +MQL                                  +  N+I  N+++  
Sbjct: 332 KDAIQLYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSM 391

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE------ 496
           + + G   EA+ +F +M+    Q ++I+WTT+IS   +     EA   FQ+MLE      
Sbjct: 392 YAKCGSHTEARAVFDKME----QRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGS 447

Query: 497 -TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
              +KP        L+AC DV++L  G+ +        L     + T++V++Y KCG I 
Sbjct: 448 SQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIE 507

Query: 556 QAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
           + +R+FD +    ++ ++NAMI+ YA  G + EAL LF  ++ +G+ PDS +F +IL AC
Sbjct: 508 EGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLAC 567

Query: 615 SHAGLVNEGLELFVGMFSDHQ-VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           SH GL ++G   F  M ++++ V  +++HFGCV +LL R G L EA   +  +P  PDA 
Sbjct: 568 SHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAV 627

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
              SLL+ C    + + A+ ++  LL+LEP     YVALSN YA   +W+ V++VR  M 
Sbjct: 628 AWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMA 687

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           E+G++K  G S I+IG+ +H F   D +HP+  EI   LA L
Sbjct: 688 EQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKL 729


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 215/638 (33%), Positives = 341/638 (53%), Gaps = 29/638 (4%)

Query: 153 IIGLNCRVGLSEKALIGFVEMQED-GVSPDNFV-LPNVLKACGALGWVGF--GRAVHGYV 208
           ++GL  R    E+A   F++M     VSP+++V L +          VG   GR VHG+V
Sbjct: 1   MVGL-VRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHV 59

Query: 209 LKVGF-DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267
           +  G  D  V + + L++MY KCG + +AR+VF  M+ ++ V+WNSMI G  QNG   EA
Sbjct: 60  ITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEA 119

Query: 268 IRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327
           +  +  M    + P   ++ S LS+ A+L     G+Q H  ++  G++L+  + ++++  
Sbjct: 120 VERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTL 179

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAK 387
           Y++ G L +   +FS M E D V+WN +I +   S +S     +  ++          A 
Sbjct: 180 YAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNAL-------RAG 232

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
           Q  N I    V+       ++ +LG+      L Y +  E  +      N++I  + + G
Sbjct: 233 QKLNRITFSSVLS-AVSSLSFGELGKQIHGLALKYNIADEATTE-----NALIACYGKCG 286

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
           +M+  + +F +M     + + +TW ++ISG   N    +A+     ML+TG +  +    
Sbjct: 287 EMDGCEKIFSRMSE---RRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYA 343

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV--TSLVDMYAKCGNIHQAKRVFDISP 565
             LSA   VA+L  G  +H   +R   CL + +V  ++LVDMY+KCG +  A R F+  P
Sbjct: 344 TVLSAFASVATLERGMEVHACSVR--ACLESDVVVGSALVDMYSKCGRLDYALRFFNTMP 401

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGL 624
            +    +N+MISGYA HG   EAL LF N++  G   PD +TF  +L+ACSHAGL+ EG 
Sbjct: 402 VRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGF 461

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
           + F  M   + + P +EHF C+ +LL R G LD+    I  MP  P+  I  ++L  C +
Sbjct: 462 KHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPNVLIWRTVLGACCR 521

Query: 685 SN--ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
           +N  + EL +  +E L QLEP+N  NYV L N YAA GRW ++ + R  MK+  ++K  G
Sbjct: 522 ANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAG 581

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            SW+ + + +H+FVA D+SHP T+ IY  L  L   +R
Sbjct: 582 YSWVTMKDGVHMFVAGDKSHPDTDVIYKKLKELNRKMR 619



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 151/534 (28%), Positives = 253/534 (47%), Gaps = 76/534 (14%)

Query: 54  LSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQG-----CVYKRDMYTGQQIHARILKN 108
           L ++K   EA  L  +M      + PE Y  LL          +  +  G+++H  ++  
Sbjct: 4   LVRQKWGEEATKLFMDMNSM-IDVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHVITT 62

Query: 109 G--DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII-GLNCRVGLSEK 165
           G  DF      +   LV  YAKC ++  A R+FC +  K+  SW ++I GL+ + G   +
Sbjct: 63  GLVDFMVG---IGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLD-QNGCFIE 118

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  +  M+   + P +F L + L +C +L W   G+ +HG  LK+G D  V V+++L+ 
Sbjct: 119 AVERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMT 178

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN-EEAIRVFYEMTLEGVEPTRV 284
           +Y + G L E RK+F  M   + V+WNS+I     +  +  EA+  F      G +  R+
Sbjct: 179 LYAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRI 238

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           + +S+LSA ++L   + GKQ H +A+   +  +    +++I  Y K G ++  E +FSRM
Sbjct: 239 TFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRM 298

Query: 345 VE-RDIVTWNLLIASYV----------------QSGQ----------------------- 364
            E RD VTWN +I+ Y+                Q+GQ                       
Sbjct: 299 SERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERG 358

Query: 365 -------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
                        SDVVV S++VDMY+KC R+D A + FN++ +R+   WN++++ YA  
Sbjct: 359 MEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARH 418

Query: 412 GRSGEASRLFYQMQLEG-ISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLI 469
           G+  EA +LF  M+L+G   P+ +++  V+      G + E    F  M  S G+ P + 
Sbjct: 419 GQGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIE 478

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
            ++ +   L +    ++   F  +M    +KP+       L AC       NGR
Sbjct: 479 HFSCMADLLGRAGELDKLEDFIDKM---PVKPNVLIWRTVLGACCRA----NGR 525



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 202/436 (46%), Gaps = 27/436 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+ L +     EAV+    M+      G       L  C   +    GQQIH   
Sbjct: 102 SWNSMITGLDQNGCFIEAVERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGES 161

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LK G     N  V   L+  YA+   L+   ++F  +   +  SW +IIG    +  SE+
Sbjct: 162 LKLG--IDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGA---LASSER 216

Query: 166 AL----IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVAS 221
           +L      F+     G   +     +VL A  +L +   G+ +HG  LK          +
Sbjct: 217 SLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTEN 276

Query: 222 SLIDMYGKCGDLEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           +LI  YGKCG+++   K+F  M   R+ V WNSMI GY+ N L  +A+ + + M   G  
Sbjct: 277 ALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQR 336

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
                  ++LSA A++  L+ G + HA +V   +E D V+GS++++ YSK G L+ A   
Sbjct: 337 LDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRF 396

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F+ M  R+  +WN +I+ Y + GQ +       + ++A      N K   +     D V 
Sbjct: 397 FNTMPVRNSYSWNSMISGYARHGQGE-----EALKLFA------NMK--LDGQTPPDHVT 443

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           +  +L+A +  G   E  + F  M    G++P I  ++ +     R G++++ +D   +M
Sbjct: 444 FVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIDKM 503

Query: 460 QSLGVQPNLITWTTLI 475
               V+PN++ W T++
Sbjct: 504 P---VKPNVLIWRTVL 516


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 199/610 (32%), Positives = 315/610 (51%), Gaps = 57/610 (9%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDM--YGKCGDLEEARKVFDGMIAR--NVVAWNSMIVG 257
           + +H  ++K G    +F  S LI+        DL  A  +F  +  +  N+  WN++I  
Sbjct: 42  KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           +        ++ +F +M   G+ P   +  S+  + A   A  E KQ HA A+   + L 
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLH 161

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
             + +S+I+ YS+VG L  A +VF +   RD V++  LI  YV  G              
Sbjct: 162 PHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGH------------- 208

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
                +D+A+++F+ I  +DVV WN ++A Y   GR  EA   F +MQ   +SPN  +  
Sbjct: 209 -----VDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMV 263

Query: 438 SVI---------------------LGFLRNGQM-NEAKDMFLQMQSLGV---------QP 466
           SV+                      GF +N Q+ N   DM+ +   +G            
Sbjct: 264 SVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDK 323

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
           ++I W T+I G    S   EA++ F+ ML   + P+  T    L AC  + +L  G+ +H
Sbjct: 324 DVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVH 383

Query: 527 GYLIRH----DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
            Y+ ++           + TS++ MYAKCG +  A++VF    S+ L  +NAMISG AM+
Sbjct: 384 AYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMN 443

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G A  AL LF+ +  +G  PD ITF  +L+AC+ AG V  G   F  M  D+ + P ++H
Sbjct: 444 GHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQH 503

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           +GC+++LL+R G  DEA  ++  M  +PD  I GSLL+ C    + E  EY++E L +LE
Sbjct: 504 YGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELE 563

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           P+N G YV LSN YA +GRW++V+++R  + +KG++K PGC+ I+I   +H F+  D+ H
Sbjct: 564 PENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFH 623

Query: 763 PKTEEIYATL 772
           P++E I+  L
Sbjct: 624 PQSENIFRML 633



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 144/467 (30%), Positives = 227/467 (48%), Gaps = 40/467 (8%)

Query: 19  PQKPLKL-SQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQI 77
           P   L L SQ   + L  + +++ SL+KS        +K K   EA  L          +
Sbjct: 108 PTSSLHLFSQMLHSGLYPNSHTFPSLFKS-------CAKSKATHEAKQLHAHALKLALHL 160

Query: 78  GPEIYGELLQGCVYKRDMYT--GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVA 135
            P ++  L+        MY+  G+  HAR++ +     R+    T L+  Y     +D A
Sbjct: 161 HPHVHTSLIH-------MYSQVGELRHARLVFDKSTL-RDAVSFTALITGYVSEGHVDDA 212

Query: 136 SRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
            RLF  +  K+V SW A+I    + G  E+AL  F  MQE  VSP+   + +VL ACG L
Sbjct: 213 RRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHL 272

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
             +  G+ +  +V   GF   + + ++L+DMY KCG++  ARK+FDGM  ++V+ WN+MI
Sbjct: 273 RSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMI 332

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            GY    L EEA+ +F  M  E V P  V+  ++L A A+L ALD GK  HA    N   
Sbjct: 333 GGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKG 392

Query: 316 LDNV----LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVAS 371
             NV    L +SII  Y+K G +E AE VF  M  R + +WN +I+    +G ++  +  
Sbjct: 393 TGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGL 452

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GIS 430
                          +++ N     D + +  +L+A    G      R F  M  + GIS
Sbjct: 453 --------------FEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGIS 498

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
           P +  +  +I    R+G+ +EAK +   M ++ ++P+   W +L++ 
Sbjct: 499 PKLQHYGCMIDLLARSGKFDEAKVL---MGNMEMEPDGAIWGSLLNA 542



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 150/574 (26%), Positives = 248/574 (43%), Gaps = 102/574 (17%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV--ASRLFCRLRVK--NVFS 149
           D+ + +QIH+ I+K+G       + ++KL+ F A   + D+  A  LF  +  +  N+F 
Sbjct: 37  DIPSLKQIHSLIIKSG--LHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFI 94

Query: 150 WAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL 209
           W  +I  +        +L  F +M   G+ P++   P++ K+C         + +H + L
Sbjct: 95  WNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHAL 154

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEA-------------------------------RK 238
           K+       V +SLI MY + G+L  A                               R+
Sbjct: 155 KLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARR 214

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +FD + A++VV+WN+MI GYVQ+G  EEA+  F  M    V P + ++ S+LSA  +L +
Sbjct: 215 LFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRS 274

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           L+ GK   +     G   +  L +++++ YSK G +  A  +F  M ++D++ WN +I  
Sbjct: 275 LELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGG 334

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN-----TLLAAYADLG- 412
           Y              + +Y +         V   ++LR+ V  N      +L A A LG 
Sbjct: 335 YCH------------LSLYEEA-------LVLFEVMLRENVTPNDVTFLAVLPACASLGA 375

Query: 413 -RSGEASRLFYQMQLEGIS--PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
              G+    +    L+G     N+  W S+I+ + + G +  A+ +F  M S     +L 
Sbjct: 376 LDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSR----SLA 431

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           +W  +ISGL  N     A+  F+EM+  G +P   T    LSACT    +  G   H Y 
Sbjct: 432 SWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELG---HRYF 488

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
                                        + + ISP  +L  Y  MI   A  G   EA 
Sbjct: 489 -------------------------SSMNKDYGISP--KLQHYGCMIDLLARSGKFDEAK 521

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
            L  N++   ++PD   + ++LNAC   G V  G
Sbjct: 522 VLMGNME---MEPDGAIWGSLLNACRIHGQVEFG 552


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 306/567 (53%), Gaps = 31/567 (5%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L +AR +FD M  R+ V +N MI  +  +GL   A R ++++     E   VS   +L+A
Sbjct: 116 LADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA-RHYFDLA---PEKDAVSWNGMLAA 171

Query: 293 SANLDALDEGKQAHAVAVING-MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
                 +  G+   A  + N   E D +  +++++ Y + G + +A  +F RM  RD+V+
Sbjct: 172 Y-----VRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVS 226

Query: 352 WNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
           WN++++ Y + G               DV   +++V  YA+   ++ A++VF+++  R+ 
Sbjct: 227 WNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA 286

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
           V WN ++AAY       EA  LF  M       N+ SWN+++ G+ + G + EAK +F  
Sbjct: 287 VSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTMLTGYAQAGMLEEAKAVFDT 342

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           M     Q + ++W  +++  +Q  C  E +  F EM   G   + +   C LS C D+A+
Sbjct: 343 MP----QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 398

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           L  G  +HG LIR    +   +  +L+ MY KCGN+  A+  F+    +++  +N MI+G
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAG 458

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           YA HG   EAL +F  ++     PD IT   +L ACSH+GLV +G+  F  M  D  V  
Sbjct: 459 YARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 518

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
             EH+ C+++LL R G L EA  ++  MP +PD+ + G+LL         EL    +E +
Sbjct: 519 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKI 578

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
            +LEP+N G YV LSN YA+SG+W +  ++R +M+E+G++K PG SWI++  ++H F A 
Sbjct: 579 FELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAG 638

Query: 759 DRSHPKTEEIYATLALLGMHVRLVSKV 785
           D  HP+ E+IYA L  L M ++    V
Sbjct: 639 DCVHPEKEKIYAFLEDLDMRMKKAGYV 665



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 126/252 (50%), Gaps = 12/252 (4%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN      ++  YA+   L+ A  +F  +  K+  SWAA++    + G SE+ L  F+EM
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              G   +      VL  C  +  +  G  +HG +++ G+    FV ++L+ MY KCG++
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 434

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           E+AR  F+ M  R+VV+WN+MI GY ++G  +EA+ +F  M     +P  +++  +L+A 
Sbjct: 435 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDAEVVFSRM-VE 346
           ++   +++G     ++    M  D  + +       +I+   + G L +A  +   M  E
Sbjct: 495 SHSGLVEKG-----ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 549

Query: 347 RDIVTWNLLIAS 358
            D   W  L+ +
Sbjct: 550 PDSTMWGALLGA 561



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 156/361 (43%), Gaps = 64/361 (17%)

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ--------- 364
           +E + +  +  I  + + G + DAE +F+ M  R   T+N ++A Y  +G+         
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 365 --------------SDVVVASSIVDM---------------------YAKCERIDNAKQV 389
                           + V+SS+ D                      +A    +  A+  
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F+    +D V WN +LAAY   GR  EA  LF          + ISWN+++ G+++ G+M
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDAISWNALMSGYVQWGKM 209

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           +EA+++F +M    V    ++W  ++SG  +     EA    + + +        T T  
Sbjct: 210 SEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEA----RRLFDAAPVRDVFTWTAV 261

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           +S       L   R +   +   +      +V +    Y +   + +AK +F++ P + +
Sbjct: 262 VSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAA----YIQRRMMDEAKELFNMMPCRNV 317

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +N M++GYA  G+  EA A+F  + QK    D++++  +L A S  G   E L+LF+ 
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 630 M 630
           M
Sbjct: 374 M 374



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 139/349 (39%), Gaps = 95/349 (27%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VF  ++++  Y + G LEEAR+VFD M  RN V+WN+M+  Y+Q  + +EA  +F  M  
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPC 314

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
             V            AS N                           +++  Y++ G+LE+
Sbjct: 315 RNV------------ASWN---------------------------TMLTGYAQAGMLEE 335

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSD------------------------------ 366
           A+ VF  M ++D V+W  ++A+Y Q G S+                              
Sbjct: 336 AKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCAD 395

Query: 367 ----------------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                                   V ++++ MY KC  +++A+  F  +  RDVV WNT+
Sbjct: 396 IAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTM 455

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLG 463
           +A YA  G   EA  +F  M+     P+ I+   V+     +G + +    F  M    G
Sbjct: 456 IAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFG 515

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           V      +T +I  L +     EA    ++M     +P +T     L A
Sbjct: 516 VTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM---PFEPDSTMWGALLGA 561



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 14/252 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEM-KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHAR 104
           S+   +++ S+     E + L  EM +C  + +    +  +L  C     +  G Q+H R
Sbjct: 350 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEW-VNRSAFACVLSTCADIAALECGMQLHGR 408

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           +++ G  +    +V   L+  Y KC  ++ A   F  +  ++V SW  +I    R G  +
Sbjct: 409 LIRAG--YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGK 466

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA---- 220
           +AL  F  M+     PD+  L  VL AC   G V  G +   Y   +  D  V       
Sbjct: 467 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGIS---YFYSMHHDFGVTAKPEHY 523

Query: 221 SSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           + +ID+ G+ G L EA  +   M    +   W +++ G  +   N E  R   E   E +
Sbjct: 524 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL-GASRIHRNPELGRSAAEKIFE-L 581

Query: 280 EPTRVSVTSILS 291
           EP    +  +LS
Sbjct: 582 EPENAGMYVLLS 593



 Score = 47.4 bits (111), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           +  + + G +  A+R+F   P +    YNAM++GY+ +G    A +LF+ + +    PD+
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR----PDN 100

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
            ++  +L    HA  V+  L    G+F +  V+ S+  +  +++  +  G +  A R   
Sbjct: 101 YSYNTLL----HALAVSSSLADARGLFDEMPVRDSVT-YNVMISSHANHGLVSLA-RHYF 154

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
            +  + DA     +L+  V++   E A  +     + +     ++ AL + Y   G+ +E
Sbjct: 155 DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAI---SWNALMSGYVQWGKMSE 211

Query: 725 VSQVRDIM 732
             ++ D M
Sbjct: 212 ARELFDRM 219


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 224/733 (30%), Positives = 358/733 (48%), Gaps = 107/733 (14%)

Query: 153 IIGLNCRVGLSEKALIGFVEMQEDGVSP--DNFVLPNVLKACGALGWVGFGRAVHGYVLK 210
           IIG  C   +   AL+ +  M+    SP  D++   + LKAC     +  G+A+H +VL+
Sbjct: 75  IIGFICN-NMPIDALLFYARMRASP-SPKFDSYTFSSTLKACAQARSLKLGKALHCHVLR 132

Query: 211 VGFDGCVFVASSLIDMYGKC-------------GDLEEARKVFDGMIARNVVAWNSMIVG 257
             F     V +SL++MY  C              + +  R+VFD M  RNVVAWN+MI  
Sbjct: 133 SHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISW 192

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL- 316
           YV+     EA ++F  M   G+ PT VS  ++  A   +   D     + + V  G +  
Sbjct: 193 YVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFV 252

Query: 317 -DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY-------------VQS 362
            D  + SS I  Y+++G ++ A  +F   +ER+   WN +I  Y             VQ 
Sbjct: 253 DDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQV 312

Query: 363 GQSD----------------------------------------VVVASSIVDMYAKCER 382
            +S+                                        VV+ ++I+ MY++C  
Sbjct: 313 MESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGS 372

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-- 440
           I  + +VF++++ RDVV WNT+++A+   G   E   L + MQ +G   + ++  +++  
Sbjct: 373 IGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSL 432

Query: 441 LGFLRNGQMNEAKDMFL---QMQSLGVQPNLI---------------------------T 470
              LR+ ++ +    +L    +Q  G+   LI                           T
Sbjct: 433 ASNLRSQEIGKQAHAYLIRHGIQFEGMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEAT 492

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W  +I+G TQN    E    F++M+E  ++P+  T+   L AC  + ++  G+ IHG+ I
Sbjct: 493 WNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAI 552

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           R  L     + T+L+DMY+K G I  A+ VF  +  K    Y  MIS Y  HG+   AL+
Sbjct: 553 RCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALS 612

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF  +   GI PDS+TF  IL+ACS+AGLV+EGL +F  M  +++++PS EH+ CV ++L
Sbjct: 613 LFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADML 672

Query: 651 SRCGNLDEALRVILTMPCDPDAH-IIGSLLSTCVKSNETELAEYISEHLLQLEPDNP--G 707
            R G + EA   +  +  + +   I GSLL  C    E EL + ++  LL++E  +   G
Sbjct: 673 GRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTG 732

Query: 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEE 767
            +V LSN YAA G W+ V +VR  M++KGL K  GCSW+++   ++ F++ D  HP+  E
Sbjct: 733 YHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAE 792

Query: 768 IYATLALLGMHVR 780
           IY  L  L M ++
Sbjct: 793 IYQMLEKLAMEMK 805



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 148/586 (25%), Positives = 264/586 (45%), Gaps = 49/586 (8%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS   K +++ EA  +   M     +  P  +  +        D      ++  ++K G 
Sbjct: 190 ISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGS 249

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +V +  +  YA+   +D A  +F     +N   W  +IG   +     +A+  F
Sbjct: 250 DFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLF 309

Query: 171 VE-MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           V+ M+ +    D+    + L A   L W+  GR +H Y+LK      V + +++I MY +
Sbjct: 310 VQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSR 369

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG +  + KVF  M+ R+VV WN+M+  +VQNGL++E + + + M  +G     V++T++
Sbjct: 370 CGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTAL 429

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM--VER 347
           LS ++NL + + GKQAHA  + +G++ +  + S +I+ Y+K GL+  A+ +F +    +R
Sbjct: 430 LSLASNLRSQEIGKQAHAYLIRHGIQFEG-MDSYLIDMYAKSGLITTAQQLFEKNSDYDR 488

Query: 348 DIVTWNLLIASYVQSGQSD-----------------VVVASSIVDMYAKCERIDNAKQVF 390
           D  TWN +IA Y Q+G S+                  V  +SI+        I   KQ+ 
Sbjct: 489 DEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIH 548

Query: 391 NSIIL----RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
              I     R+V +   LL  Y+  G    A  +F     E +  N +++ ++I  + ++
Sbjct: 549 GFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVF----AETLEKNSVTYTTMISSYGQH 604

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTT 505
           G    A  +F  M   G++P+ +T+  ++S  +     +E +  FQ M  E  I+PS   
Sbjct: 605 GMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEH 664

Query: 506 ITCALSACTDVASL--RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ------- 556
             C       VA +  R GR +  Y     L            +   C  IH        
Sbjct: 665 YCC-------VADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGAC-RIHGEFELGKV 716

Query: 557 -AKRVFDISPSKELPVYNAMISG-YAMHGLAVEALALFKNLQQKGI 600
            A ++ ++     L  Y+ ++S  YA  G       + K ++QKG+
Sbjct: 717 VANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGL 762



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 218/503 (43%), Gaps = 113/503 (22%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT--S 288
           G   +A  +FD +     V WN++I+G++ N +  +A+ +FY        P   S T  S
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDAL-LFYARMRASPSPKFDSYTFSS 109

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK-------VGLLED----- 336
            L A A   +L  GK  H   + +      ++ +S++N YS        +G   D     
Sbjct: 110 TLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCD 169

Query: 337 -AEVVFSRMVERDIVTWNLLIASYVQSGQ------------------------------- 364
               VF  M +R++V WN +I+ YV++ +                               
Sbjct: 170 LVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVW 229

Query: 365 -------------------SDVV----VASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
                              SD V    V SS + MYA+   +D A+++F+  + R+  +W
Sbjct: 230 RMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVW 289

Query: 402 NTLLAAYADLGRSGEASRLFYQMQ---------------LEGISP--------------- 431
           NT++  Y       EA  LF Q+                L  IS                
Sbjct: 290 NTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYIL 349

Query: 432 ------NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
                  ++  N++I+ + R G +  +  +F  M    ++ +++TW T++S   QN   +
Sbjct: 350 KSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM----LERDVVTWNTMVSAFVQNGLDD 405

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
           E ++    M + G    + T+T  LS  +++ S   G+  H YLIRH +     + + L+
Sbjct: 406 EGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDSYLI 464

Query: 546 DMYAKCGNIHQAKRVFDISP--SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           DMYAK G I  A+++F+ +    ++   +NAMI+GY  +GL+ E  A+F+ + ++ + P+
Sbjct: 465 DMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPN 524

Query: 604 SITFTNILNACSHAGLVNEGLEL 626
           ++T  +IL AC+  G +  G ++
Sbjct: 525 AVTLASILPACNPMGTIGLGKQI 547



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 18/183 (9%)

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPST 503
           R G  ++A  +F  +     +P  + W T+I G   N+   +A+LF+  M  +   K  +
Sbjct: 49  RQGHPHQALHLFDSIP----RPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDS 104

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC------------ 551
            T +  L AC    SL+ G+A+H +++R        +  SL++MY+ C            
Sbjct: 105 YTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYD 164

Query: 552 -GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
             N    +RVFD    + +  +N MIS Y      +EA  +F+ + + GI P  ++F N+
Sbjct: 165 FNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNV 224

Query: 611 LNA 613
             A
Sbjct: 225 FPA 227



 Score = 42.4 bits (98), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP--DSITFTN 609
           G+ HQA  +FD  P     ++N +I G+  + + ++AL LF    +    P  DS TF++
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDAL-LFYARMRASPSPKFDSYTFSS 109

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            L AC+ A  +  G  L   +   H    S   +  ++N+ S C
Sbjct: 110 TLKACAQARSLKLGKALHCHVLRSH-FGSSRIVYNSLLNMYSTC 152


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/563 (33%), Positives = 312/563 (55%), Gaps = 61/563 (10%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VF  ++++  Y K G++E+ R VFD M   + V++N++I G+  NG + +A+  F  M  
Sbjct: 89  VFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQE 148

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           EG E T  +  S+L A + L  +  GKQ      I+G  +   LG S+            
Sbjct: 149 EGFESTDYTHVSVLHACSQLLDIKRGKQ------IHGRIVATSLGESVF----------- 191

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
                          WN                  ++ +MYAKC  +D A+ +F+ ++ +
Sbjct: 192 --------------VWN------------------ALTNMYAKCGALDQARWLFDRMVNK 219

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           +VV WN++++ Y   G+    ++LF +MQ  G+ P+ ++ ++++  + + G ++EA   F
Sbjct: 220 NVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTF 279

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            +++    + + + WTT++ G  QN    +A+L F+EML   ++P   TI+  +S+C  +
Sbjct: 280 REIK----EKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARL 335

Query: 517 ASLRNGRAIHG----YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           ASL  G+A+HG    + + HDL     + ++LVDMY+KCG    A  VF    ++ +  +
Sbjct: 336 ASLCQGQAVHGKAVIFGVDHDLL----VSSALVDMYSKCGETADAWIVFKRMLTRNVISW 391

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
           N+MI GYA +G  +EALAL++ +  + + PD+ITF  +L+AC HAGLV  G   F  +  
Sbjct: 392 NSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISK 451

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
            H + P+ +H+ C++NLL R G +D+A+ +I +M  +P+  I  +LLS C  + +    E
Sbjct: 452 IHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGE 511

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
             + HL +L+P N G Y+ LSN YAA GRW +V+ VR +MK   ++K    SWI+I  ++
Sbjct: 512 MAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQV 571

Query: 753 HVFVACDRSHPKTEEIYATLALL 775
           H FVA DR+H +TE+IY  L  L
Sbjct: 572 HKFVAEDRTHSETEQIYEELNRL 594



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 134/482 (27%), Positives = 227/482 (47%), Gaps = 60/482 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SY   I+  S      +A++    M+   F+     +  +L  C    D+  G+QIH RI
Sbjct: 122 SYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRI 181

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +        + +V   L   YAKC ALD A  LF R+  KNV SW ++I    + G  E 
Sbjct: 182 VATS--LGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPET 239

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
               F EMQ  G+ PD   + N+L A                                  
Sbjct: 240 CTKLFCEMQSSGLMPDQVTISNILSA---------------------------------- 265

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
            Y +CG ++EA K F  +  ++ V W +M+VG  QNG  E+A+ +F EM LE V P   +
Sbjct: 266 -YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFT 324

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           ++S++S+ A L +L +G+  H  AVI G++ D ++ S++++ YSK G   DA +VF RM+
Sbjct: 325 ISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRML 384

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
            R++++WN +I  Y Q+G+    +A     +Y         +++ +  +  D + +  +L
Sbjct: 385 TRNVISWNSMILGYAQNGKDLEALA-----LY---------EEMLHENLKPDNITFVGVL 430

Query: 406 AAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           +A    G        FY + ++ G++P    ++ +I    R G M++A D+   ++S+  
Sbjct: 431 SACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDL---IKSMTF 487

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLE-----TGIKPSTTTITCALSACTDVASL 519
           +PN + W+TL+S    N   N   +  + + E      G     + I  A     DVA++
Sbjct: 488 EPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAV 547

Query: 520 RN 521
           R+
Sbjct: 548 RS 549


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 197/609 (32%), Positives = 328/609 (53%), Gaps = 60/609 (9%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           F  ++++  Y K GD++ + + FD +  R+ V+W +MIVGY   G   +AIR+  EM  E
Sbjct: 81  FSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMRE 140

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G+EP++ ++T++L++ A    L+ GK+ H+  V  G+  +  + +S++N Y+K G    A
Sbjct: 141 GIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA 200

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVAS-------------------------- 371
           +VVF RMV +DI +WN +IA ++Q GQ D+ +A                           
Sbjct: 201 KVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDL 260

Query: 372 SIVDMYAK-----------------------CERIDNAKQVFNSIILR--DV--VLWNTL 404
             +DM++K                        E++   +Q+ + I+    D+  ++ N L
Sbjct: 261 RALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNAL 320

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           ++ Y+  G    A RL  Q   + +   I  + +++ G+++ G MNEAK++F  ++    
Sbjct: 321 ISMYSRCGGVETARRLIEQRGTKDL--KIEGFTALLDGYIKLGDMNEAKNIFDSLK---- 374

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
             +++ WT +I G  Q+    EAI  F+ M+    +P++ T+   LS  + +ASL +G+ 
Sbjct: 375 DRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQ 434

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHG 583
           IHG  ++        +  +L+ MYAK G+I  A R FD I   ++   + +MI   A HG
Sbjct: 435 IHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHG 494

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
            A EAL LF+ +  +G+ PD IT+  + +AC+HAGLVN+G + F  M    ++ P++ H+
Sbjct: 495 HAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHY 554

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
            C+V+L  R G L EA   I  MP +PD    GSLLS C      +L +  +E LL LEP
Sbjct: 555 ACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEP 614

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHP 763
           +N G Y AL+N Y+A G+W E +++R  MK+  ++K  G SWI++  ++H F   D  HP
Sbjct: 615 ENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHP 674

Query: 764 KTEEIYATL 772
           +  EIY T+
Sbjct: 675 QKNEIYITM 683



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 172/691 (24%), Positives = 292/691 (42%), Gaps = 165/691 (23%)

Query: 80  EIYGELLQGCVYKRD-MYTGQQIHARILKNGDFFA------------------------- 113
           E+   LLQ  V K +  +T Q +H R++K+G  F+                         
Sbjct: 14  ELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFD 73

Query: 114 ----RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
               R  +    ++  YAK   +D +   F RL  ++  SW  +I     +G   KA+  
Sbjct: 74  EMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRI 133

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
             EM  +G+ P  F L NVL +  A   +  G+ VH +++K+G  G V V++SL++MY K
Sbjct: 134 MGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAK 193

Query: 230 CGDLEEARKVFDGMIA-------------------------------RNVVAWNSMIVGY 258
           CGD   A+ VFD M+                                R++V WNSMI GY
Sbjct: 194 CGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGY 253

Query: 259 VQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
            Q G +  A+ +F +M  +  + P R ++ S+LSA ANL+ L  G+Q H+  V  G ++ 
Sbjct: 254 NQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDIS 313

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA--SSIVD 375
            ++ +++I+ YS+ G +E A     R++E              Q G  D+ +   ++++D
Sbjct: 314 GIVLNALISMYSRCGGVETAR----RLIE--------------QRGTKDLKIEGFTALLD 355

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
            Y K   ++ AK +F+S+  RDVV W  ++  Y   G  GEA  LF  M  E   PN  +
Sbjct: 356 GYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYT 415

Query: 436 W-----------------------------------NSVILGFLRNGQMNEAKDMFLQMQ 460
                                               N++I  + + G +  A   F    
Sbjct: 416 LAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAF---D 472

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
            +  + + ++WT++I  L Q+    EA+  F+ ML  G++P   T     SACT    + 
Sbjct: 473 LIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVN 532

Query: 521 NGRAIHGYLIRHDLCLPT-PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
            GR     +   D  +PT      +VD++ + G + +A+   +  P              
Sbjct: 533 QGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMP-------------- 578

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ---V 636
                               I+PD +T+ ++L+AC     V + ++L  G  +  +   +
Sbjct: 579 --------------------IEPDVVTWGSLLSACR----VYKNIDL--GKVAAERLLLL 612

Query: 637 KPSME-HFGCVVNLLSRCGNLDEALRVILTM 666
           +P     +  + NL S CG  +EA ++  +M
Sbjct: 613 EPENSGAYSALANLYSACGKWEEAAKIRKSM 643



 Score =  172 bits (435), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 143/571 (25%), Positives = 237/571 (41%), Gaps = 126/571 (22%)

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           Q  +A+ ++ EM     +        +L      R + TG+++H+ I+K G     N  V
Sbjct: 126 QYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLG--LRGNVSV 183

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
              L+  YAKC    +A  +F R+ VK++ SW A+I L+ +VG  + A+  F +M E  +
Sbjct: 184 SNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 179 --------------------------------SPDNFVLPNVLKACGALGWVGFGRAVHG 206
                                           SPD F L +VL AC  L  +  G  +H 
Sbjct: 244 VTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHS 303

Query: 207 YVLKVGFDGCVFVASSLIDMYGKC---------------------------------GDL 233
           +++  GFD    V ++LI MY +C                                 GD+
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
            EA+ +FD +  R+VVAW +MIVGY Q+GL  EAI +F  M  E   P   ++ ++LS +
Sbjct: 364 NEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVA 423

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTW 352
           ++L +L  GKQ H  AV +G      + +++I  Y+K G +  A   F  +  ERD V+W
Sbjct: 424 SSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSW 483

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
             +I +  Q G ++                                              
Sbjct: 484 TSMIIALAQHGHAE---------------------------------------------- 497

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG-VQPNLITW 471
              EA  LF  M +EG+ P+ I++  V       G +N+ +  F  M+ +  + P L  +
Sbjct: 498 ---EALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHY 554

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
             ++    +     EA  F ++M    I+P   T    LSAC    ++  G+     L+ 
Sbjct: 555 ACMVDLFGRAGLLQEAQEFIEKM---PIEPDVVTWGSLLSACRVYKNIDLGKVAAERLL- 610

Query: 532 HDLCLP--TPIVTSLVDMYAKCGNIHQAKRV 560
             L  P  +   ++L ++Y+ CG   +A ++
Sbjct: 611 --LLEPENSGAYSALANLYSACGKWEEAAKI 639



 Score = 47.0 bits (110), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 501 PSTTTITCALSACTDV----ASLRNGR----AIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           P   +++  L  CT++     +  NGR     +H  +I+  L     ++ +L+++Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
               A+++FD  P +    +N ++S YA  G    +   F  L Q+    DS+++T ++ 
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQR----DSVSWTTMIV 119

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPS 639
              + G  ++ + +   M  +  ++PS
Sbjct: 120 GYKNIGQYHKAIRIMGEMMRE-GIEPS 145


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 198/668 (29%), Positives = 347/668 (51%), Gaps = 73/668 (10%)

Query: 180 PDNFVLP---NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           P+N VL    ++L+ C         + +H  ++  G     F+A+ ++ +Y   G + +A
Sbjct: 29  PNNDVLDFFNDLLQQCSK---SHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDA 85

Query: 237 RKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           ++VF+        N++ WNS++   V +G  EEA+ ++  M   GV     +   ++ A 
Sbjct: 86  QRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRAC 145

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A + +    +  H   V  G + +  +G+ ++  Y K+G ++DA  VF RM  R  V+WN
Sbjct: 146 ALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWN 205

Query: 354 LLIASYV----------------QSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
            +++ Y                  +G + ++V  +S++  +A+C +     ++F  + +R
Sbjct: 206 TMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMR 265

Query: 397 DV---------------------------------------VLWNTLLAAYADLGRSGEA 417
            +                                        + N+L+  Y   G    A
Sbjct: 266 GIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAA 325

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG----VQPNLITWTT 473
             LF +++    + NI+SWN++I  +   G  +EA  +FLQ++       V+PN+++W+ 
Sbjct: 326 RILFLEIK----TKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSA 381

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +I G      G EA+  F+ M    +K ++ TI   LS C ++A+L  GR IHG+++R  
Sbjct: 382 VIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSL 441

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
           +     +   L++MY K G+  +   VF+   +K+L  +N M++GY +HGL   A+  F 
Sbjct: 442 MDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFD 501

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            + + G +PD +TF  +L+ACSHAGLV EG ELF  M  + +V+P MEH+ C+V+LL R 
Sbjct: 502 QMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRA 561

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G L EA +V+ +MP +P+A + G+LL++C     TE+AE  +  +  L  +  G+Y+ LS
Sbjct: 562 GLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLS 621

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           N YAASGRW + ++VR   K KGL+K PG SWIQ+ +++++F A +  H + EE+Y  L 
Sbjct: 622 NIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILK 681

Query: 774 LLGMHVRL 781
            LG+ + +
Sbjct: 682 DLGLQMEV 689



 Score =  212 bits (539), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 154/578 (26%), Positives = 267/578 (46%), Gaps = 94/578 (16%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           + + +LLQ C      +  QQIH++I+  G    R+ ++  ++V  YA    +  A R+F
Sbjct: 35  DFFNDLLQQC---SKSHLSQQIHSQIIVTGSH--RSAFLAARVVSVYAGFGLVSDAQRVF 89

Query: 140 CRLRVK---NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
               ++   N+  W +I+  N   G  E+AL  +  M++ GVS D F  P V++AC  +G
Sbjct: 90  EVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMG 149

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
                R+VHG+V+++GF   + V + L+ MYGK G +++ARKVF+ M  R+ V+WN+M+ 
Sbjct: 150 SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVS 209

Query: 257 GYVQN-----------------------------------GLNEEAIRVFYEMTLEGVEP 281
           GY  N                                   G + E + +F  M + G+  
Sbjct: 210 GYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGA 269

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
           T  ++  +LS S +L A DEGK  H   V  G E    + +S+I  Y K G +  A ++F
Sbjct: 270 TAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILF 329

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
             +  ++IV+WN LI+SY   G  D   A     ++ + E+ D        ++  +VV W
Sbjct: 330 LEIKTKNIVSWNALISSYADLGWCDEAFA-----IFLQLEKTDEY-----PMVRPNVVSW 379

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LG--------- 442
           + ++  +A  G+  EA  LF +MQL  +  N ++  SV+          LG         
Sbjct: 380 SAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVR 439

Query: 443 ----------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                           + ++G   E   +F ++++     +LI+W T+++G   +  G  
Sbjct: 440 SLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIEN----KDLISWNTMVAGYGIHGLGEN 495

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT-PIVTSLV 545
           AI  F +M++ G +P   T    LSAC+    +  GR +   +I+     P       +V
Sbjct: 496 AIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMV 555

Query: 546 DMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMH 582
           D+  + G + +A +V    P +    V+ A+++   MH
Sbjct: 556 DLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMH 593



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 133/531 (25%), Positives = 233/531 (43%), Gaps = 83/531 (15%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +SS ++  Q  E ++L   M+ R      E    +L   V       G+ IH  ++K G 
Sbjct: 243 LSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGG- 301

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN------------------------ 146
            F    +V+  L+  Y K   ++ A  LF  ++ KN                        
Sbjct: 302 -FENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIF 360

Query: 147 ---------------VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
                          V SW+A+IG     G  E+AL  F  MQ   V  ++  + +VL  
Sbjct: 361 LQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSV 420

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C  L  +  GR +HG+V++   DG + V + LI+MY K G  +E   VF+ +  +++++W
Sbjct: 421 CAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISW 480

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N+M+ GY  +GL E AIR F +M  +G EP  V+  ++LSA ++   + EG++     +I
Sbjct: 481 NTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFD-KMI 539

Query: 312 NGMELDNVLG--SSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDVV 368
               ++  +   + +++   + GLL++A +VV S  VE +   W  L+ S      ++V 
Sbjct: 540 KEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVA 599

Query: 369 VASSIVDMYAKCERIDNAKQVF--NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                          + A Q+F  NS I    +L + +   YA  GR  +++++    + 
Sbjct: 600 E--------------ETASQIFNLNSEIAGSYMLLSNI---YAASGRWEDSAKVRISAKT 642

Query: 427 EGI--SPNIISWNSV-------ILGFLRNGQMNEA----KDMFLQMQSLGVQPNLI-TWT 472
           +G+  +P   SW  V         G  ++ ++ E     KD+ LQM+  G  P++     
Sbjct: 643 KGLKKTPG-QSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYIPDIDEEQR 701

Query: 473 TLISGLTQ--NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
           +++ G +    S    + L FQ+   T  KPS   I   ++   D+    N
Sbjct: 702 SILLGYSMPLPSFKTTSSLLFQK--GTTYKPSVIDIDAIITIPIDIKKRLN 750


>gi|255562697|ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538432|gb|EEF40038.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 704

 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 205/690 (29%), Positives = 366/690 (53%), Gaps = 22/690 (3%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKN--GDFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
           L++ C     +   +Q+HA IL       +A++ Y+   L+  YA C +   A +LF R+
Sbjct: 10  LIKKCTTINSLKKARQLHALILATTASTSYAQSPYLNNNLIAMYAHCGSRSDAQKLFDRM 69

Query: 143 RVKNVFSWAAIIGLNCRVGLSEK-ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
             KN  S+ A+I   CR    E  +   F +M    + P+     ++L+ C  L     G
Sbjct: 70  PRKNAISYNALIAAYCRDSSYETLSFKLFSDMGIQRLRPNGATFTSLLQVCCLLEDWFLG 129

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             +HG VL+ G+   + V + L+ MY  CGDLE A KVF   + ++ V WNSMI GY++N
Sbjct: 130 STLHGQVLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAVEKDDVFWNSMISGYLKN 189

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
              +E++ +F EM   G   T+ + +  L+A + L    +G+  HA  +++ +  D+ L 
Sbjct: 190 DRIKESLSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQGRIIHAQVIVSNILPDSALQ 249

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +++++ Y   G    A  +FSR+    +++WN +I+ + ++ + +  +      ++ K  
Sbjct: 250 NALLDMYYSCGDRRTALTLFSRIQIPSLISWNSMISWFAKNEEGEKAMG-----LFVKLL 304

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +   K         D   +  +++A  +   +     L  Q+   G+  ++   N+++ 
Sbjct: 305 GMSTCKP--------DEYTFTAIISATGEFRATDYGQPLHAQVIKAGLQWSVFIGNALLS 356

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
            + RN  +  A+ +F    SL  + +++ WT +I G  +   G  AI  F +M + G K 
Sbjct: 357 MYFRNSDVEAARGVF----SLMEEKDVVLWTEMIMGHCRLGDGESAIKLFCKMRQEGHKS 412

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
            +  ++ ALS C D+A L+ G+ +H   ++        +  SLVDMYAK GN+  A+ +F
Sbjct: 413 DSFALSGALSVCADLAILKQGQMLHTQAVKTGCEAEISVCGSLVDMYAKNGNLQAAQLIF 472

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
               + +L  +N+MI GY+ HG+A EA+ LF  + + G+ PD +TF ++L+AC+H+GLV 
Sbjct: 473 SQVCNPDLKCWNSMIGGYSHHGMAEEAVMLFAEVLECGLTPDQVTFLSLLSACNHSGLVE 532

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSLLS 680
           +G  L+  M   + + P  +H+ C+V+LLSR G LDEA  +I    C  +   +  +LLS
Sbjct: 533 KGKFLWDYM-KKNGITPGPKHYSCMVSLLSRAGLLDEAEELITESTCSEEHLKLWRTLLS 591

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
           +CV      +    ++ +L+L+P++   Y+ LSN YA +GRW+ V+++R  ++   L K+
Sbjct: 592 SCVNRRNLTVGARAAKQVLRLDPEDSATYILLSNLYAVTGRWDGVAELRKKIRGLMLEKD 651

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
           PG SWI+   ++HVF + D+S+P  +E  A
Sbjct: 652 PGVSWIEAKNDIHVFSSDDQSNPVIDEAQA 681



 Score =  159 bits (401), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 214/430 (49%), Gaps = 25/430 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYT-GQQIHARILKNG 109
           IS   K  +I+E++ L  EM  R+  I  +    +      K   Y+ G+ IHA+++ + 
Sbjct: 183 ISGYLKNDRIKESLSLFGEM-VRSGTIFTQFTCSMALNACSKLGYYSQGRIIHAQVIVSN 241

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
                +  ++  L+  Y  C     A  LF R+++ ++ SW ++I    +    EKA+  
Sbjct: 242 --ILPDSALQNALLDMYYSCGDRRTALTLFSRIQIPSLISWNSMISWFAKNEEGEKAMGL 299

Query: 170 FVEMQEDGVS---PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
           FV++   G+S   PD +    ++ A G      +G+ +H  V+K G    VF+ ++L+ M
Sbjct: 300 FVKLL--GMSTCKPDEYTFTAIISATGEFRATDYGQPLHAQVIKAGLQWSVFIGNALLSM 357

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           Y +  D+E AR VF  M  ++VV W  MI+G+ + G  E AI++F +M  EG +    ++
Sbjct: 358 YFRNSDVEAARGVFSLMEEKDVVLWTEMIMGHCRLGDGESAIKLFCKMRQEGHKSDSFAL 417

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE 346
           +  LS  A+L  L +G+  H  AV  G E +  +  S+++ Y+K G L+ A+++FS++  
Sbjct: 418 SGALSVCADLAILKQGQMLHTQAVKTGCEAEISVCGSLVDMYAKNGNLQAAQLIFSQVCN 477

Query: 347 RDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
            D+  WN +I  Y   G     +A   V ++A         +V    +  D V + +LL+
Sbjct: 478 PDLKCWNSMIGGYSHHG-----MAEEAVMLFA---------EVLECGLTPDQVTFLSLLS 523

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
           A    G   +   L+  M+  GI+P    ++ ++    R G ++EA+++    +S   + 
Sbjct: 524 ACNHSGLVEKGKFLWDYMKKNGITPGPKHYSCMVSLLSRAGLLDEAEELI--TESTCSEE 581

Query: 467 NLITWTTLIS 476
           +L  W TL+S
Sbjct: 582 HLKLWRTLLS 591


>gi|302801528|ref|XP_002982520.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
 gi|300149619|gb|EFJ16273.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
          Length = 694

 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 213/679 (31%), Positives = 344/679 (50%), Gaps = 65/679 (9%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+ C     +  G+QIHAR+         +  V   ++  Y KC+  D+A  +F  +R 
Sbjct: 16  LLEACDSPEFLEDGKQIHARV-SALQLLESDVPVANAVMGMYRKCERADLAMAVFSEMRE 74

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +++ SW   I  N   G     L     MQ +G++PD     + L AC     +  GR +
Sbjct: 75  RDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRSLSNGRLI 134

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H  VL+ G +G V + ++L+ MYG+CG LE AR++F  M  RNVV+WN+M+     N   
Sbjct: 135 HALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHF 194

Query: 265 EEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAV----AVINGMELDNV 319
            EAI +F  M  +  VEPTRVS  ++L+A    +AL EG++ H +     +++ +E+ N 
Sbjct: 195 AEAIELFKRMVAVAMVEPTRVSFITVLNAVTTREALAEGRRIHEMIQERQLLSQIEVANA 254

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           L    +  Y + G + DAE VFS M  RD+V+WN +I++Y QSG     +A  +V+++ +
Sbjct: 255 L----VTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSG-----LACEVVNLFHR 305

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
                   +   S+  RDV+ WNT++  Y   G    A  +F +M LEGI  N +++ S+
Sbjct: 306 -------MRAERSMAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTFMSL 358

Query: 440 I-----LGFLRNGQ--------------------------------MNEAKDMFLQMQSL 462
           +        LR G+                                ++ A+ +F      
Sbjct: 359 LSVCDSRALLRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTS-- 416

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
               NL +W ++IS    +    +A    + M   G+ P   T    L+AC    ++R G
Sbjct: 417 --HRNLASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRQG 474

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           + IH  +I   L   T +  +LV+ Y+KCGN+  A  +F     +++  +N +I+G+A +
Sbjct: 475 KMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDVVSWNGIIAGFAHN 534

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G A EAL     +QQ G+ PD+ITF  IL+A SHAG + +G + FV M  DH+++  +EH
Sbjct: 535 GHAREALKSMWLMQQDGVRPDAITFLTILSASSHAGFLRQGGDDFVSMAVDHELERGVEH 594

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG-SLLSTCVKSNETELAEYISEHLLQL 701
           +GC+++LL R G + EA   +  M  D D  +   +LLS C    + E A+ ++  ++++
Sbjct: 595 YGCMIDLLGRAGRIGEAEYFVSAMR-DEDKEVSWMTLLSACEVHGDEERAKRVAGSIVEM 653

Query: 702 EPDNPGNYVALSNAYAASG 720
            P +   YVALSN YA  G
Sbjct: 654 NPQHSSAYVALSNLYATCG 672



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 147/622 (23%), Positives = 262/622 (42%), Gaps = 105/622 (16%)

Query: 25  LSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGE 84
           L+    +++RE D        S+ + I++ ++       + LL  M+          +  
Sbjct: 64  LAMAVFSEMRERD------LISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVS 117

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
            L  C+  R +  G+ IHA +L+ G     +  + T LV  Y +C  L+ A  +F R+  
Sbjct: 118 ALNACIGSRSLSNGRLIHALVLERG--MEGDVVLGTALVTMYGRCGCLESAREIFHRMPE 175

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRA 203
           +NV SW A++          +A+  F  M     V P       VL A      +  GR 
Sbjct: 176 RNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTREALAEGRR 235

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG--------------------- 242
           +H  + +      + VA++L+ MYG+CG + +A +VF                       
Sbjct: 236 IHEMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGL 295

Query: 243 ----------------MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
                           M AR+V++WN+MI GYVQ G    A+ +F  M LEG+   +V+ 
Sbjct: 296 ACEVVNLFHRMRAERSMAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTF 355

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMEL--DNVLGSSIINFYSKVGLLEDAEVVFSRM 344
            S+LS   +   L +G+  H   +    EL  D ++ ++I+N Y K G L+ A  +F   
Sbjct: 356 MSLLSVCDSRALLRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDT 415

Query: 345 VERDIVTWNLLIASYVQSGQS--------------------------------------- 365
             R++ +WN +I++Y   G++                                       
Sbjct: 416 SHRNLASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRQGK 475

Query: 366 -------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                        D VVA+++V+ Y+KC  +D A  +F ++  RDVV WN ++A +A  G
Sbjct: 476 MIHARIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDVVSWNGIIAGFAHNG 535

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITW 471
            + EA +  + MQ +G+ P+ I++ +++      G + +  D F+ M     ++  +  +
Sbjct: 536 HAREALKSMWLMQQDGVRPDAITFLTILSASSHAGFLRQGGDDFVSMAVDHELERGVEHY 595

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
             +I  L +     EA  F   M +   + S  T+   LSAC         + + G ++ 
Sbjct: 596 GCMIDLLGRAGRIGEAEYFVSAMRDEDKEVSWMTL---LSACEVHGDEERAKRVAGSIVE 652

Query: 532 HDLCLPTPIVTSLVDMYAKCGN 553
            +    +  V +L ++YA CG+
Sbjct: 653 MNPQHSSAYV-ALSNLYATCGD 673



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 223/514 (43%), Gaps = 133/514 (25%)

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHA-VAVINGMELDNVLGSSIINFYSKVG 332
           M    ++P RV+  ++L A  + + L++GKQ HA V+ +  +E D  + ++++  Y K  
Sbjct: 1   MAGSSLDPNRVTFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCE 60

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSG----------------------------- 363
             + A  VFS M ERD+++WN  IA+  +SG                             
Sbjct: 61  RADLAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALN 120

Query: 364 -----------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
                                  + DVV+ +++V MY +C  +++A+++F+ +  R+VV 
Sbjct: 121 ACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVS 180

Query: 401 WNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISW----------------------- 436
           WN ++A+        EA  LF +M  +  + P  +S+                       
Sbjct: 181 WNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTREALAEGRRIHEMI 240

Query: 437 ------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
                       N+++  + R G + +A+ +F  M+    + +L++W  +IS   Q+   
Sbjct: 241 QERQLLSQIEVANALVTMYGRCGGVGDAERVFSAME----RRDLVSWNAMISAYAQSGLA 296

Query: 485 NE-------------------------------------AILFFQEMLETGIKPSTTTIT 507
            E                                     A+  F+ ML  GI+ +  T  
Sbjct: 297 CEVVNLFHRMRAERSMAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTFM 356

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPT-PIV-TSLVDMYAKCGNIHQAKRVFDISP 565
             LS C   A LR G  IH  +I     L + PIV  ++V+MY KCG +  A+ +F+ + 
Sbjct: 357 SLLSVCDSRALLRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTS 416

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            + L  +N+MIS YA+HG A +A  L + ++++G+ PD +TF  +LNAC   G V +G +
Sbjct: 417 HRNLASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRQG-K 475

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           +      D  ++        +VN  S+CGNLD A
Sbjct: 476 MIHARIIDSGLEKDTVVANALVNFYSKCGNLDTA 509


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 229/806 (28%), Positives = 378/806 (46%), Gaps = 99/806 (12%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYT---GQQIHARILKNGDFFARNEY 117
            EAV L  +M     +    +   L+  C   R  Y    G Q+H  ++K G     + Y
Sbjct: 177 EEAVGLFCQMWGLGVEPNGFMVASLITAC--SRSGYMADEGFQVHGFVVKTG--ILGDVY 232

Query: 118 VETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177
           V T LV FY     +  A +LF  +   NV SW +++      G   + L  +  M+++G
Sbjct: 233 VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 292

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           VS +      V  +CG L     G  V G++++ GF+  V VA+SLI M+     +EEA 
Sbjct: 293 VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEAC 352

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
            VFD M   ++++WN+MI  Y  +GL  E++R F+ M     E    +++S+LS  +++D
Sbjct: 353 YVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVD 412

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
            L  G+  H + V  G++ +  + ++++  YS+ G  EDAE+VF  M ERD+++WN ++A
Sbjct: 413 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMA 472

Query: 358 SYVQ---------------------------------------------------SGQSD 366
            YVQ                                                   +G  D
Sbjct: 473 CYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHD 532

Query: 367 -VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
            ++V +++V MY K   +  AK+V  ++   D V WN L+  +A+     EA + +  ++
Sbjct: 533 FLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIR 592

Query: 426 LEGISPNIISW------------------------------------NSVILGFLRNGQM 449
            +GI  N I+                                     NS+I  + + G +
Sbjct: 593 EKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDL 652

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           N +  +F     LG   + ITW  +++    + CG EA+  F EM   G+     + +  
Sbjct: 653 NSSNYIF---DGLG-NKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGG 708

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L+A  ++A L  G+ +HG +I+        +  + +DMY KCG +H   ++     ++  
Sbjct: 709 LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSR 768

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +N +IS +A HG   +A   F  + + G  PD +TF ++L+AC+H GLV+EGL  +  
Sbjct: 769 LSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDS 828

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M  +  V P +EH  C+++LL R G L  A   I  MP  P+     SLL+ C      E
Sbjct: 829 MTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLE 888

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           LA   +EHLL+L+P +   YV  SN  A SG+W +V  +R  M    ++K P CSW+++ 
Sbjct: 889 LARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLK 948

Query: 750 EELHVFVACDRSHPKTEEIYATLALL 775
           +++H F   ++ HP+   I A L  L
Sbjct: 949 DKVHSFGMGEKYHPQASRISAKLGEL 974



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 170/677 (25%), Positives = 313/677 (46%), Gaps = 107/677 (15%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  Y+K   ++ A  +F  +R +N  SW+ ++    RVGL E+A+  F +M   GV P+
Sbjct: 135 LINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPN 194

Query: 182 NFVLPNVLKACGALGWVG-FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
            F++ +++ AC   G++   G  VHG+V+K G  G V+V ++L+  YG  G +  A+K+F
Sbjct: 195 GFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLF 254

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           + M   NVV+W S++VGY  +G   E + V+  M  EGV   + +  ++ S+   L+   
Sbjct: 255 EEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQV 314

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G Q     +  G E    + +S+I+ +S    +E+A  VF  M E DI++WN +I++Y 
Sbjct: 315 LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYA 374

Query: 361 QSG----------------------------------------------------QSDVV 368
             G                                                     S+V 
Sbjct: 375 HHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVC 434

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           + ++++ +Y++  R ++A+ VF ++  RD++ WN+++A Y   G+  +  ++  ++   G
Sbjct: 435 ICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMG 494

Query: 429 ISPNIISW-----------------------------------NSVILGFLRNGQMNEAK 453
              N +++                                   N+++  + + G M EAK
Sbjct: 495 KVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAK 554

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +   M     QP+ +TW  LI G  +N   NEA+  ++ + E GI  +  T+   L AC
Sbjct: 555 KVLQTMP----QPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGAC 610

Query: 514 TDVAS-LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           +     L++G  IH +++         +  SL+ MYAKCG+++ +  +FD   +K    +
Sbjct: 611 SAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITW 670

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF----- 627
           NAM++  A HG   EAL +F  ++  G++ D  +F+  L A ++  ++ EG +L      
Sbjct: 671 NAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIK 730

Query: 628 VGMFSD-HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           +G  SD H    +M+ +G       +CG + + L+ +L  P +        L+S   +  
Sbjct: 731 LGFESDLHVTNAAMDMYG-------KCGEMHDVLK-MLPQPINRSRLSWNILISAFARHG 782

Query: 687 ETELAEYISEHLLQLEP 703
             + A      +L+L P
Sbjct: 783 CFQKARETFHEMLKLGP 799



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/556 (25%), Positives = 259/556 (46%), Gaps = 110/556 (19%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+A+H + +    +  +F  ++LI+MY K G++E AR VFD M  RN  +W++M+ GYV+
Sbjct: 113 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL-DEGKQAHAVAVINGMELDNV 319
            GL EEA+ +F +M   GVEP    V S+++A +    + DEG Q H   V  G+  D  
Sbjct: 173 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 232

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------- 363
           +G+++++FY  +GL+ +A+ +F  M + ++V+W  L+  Y  SG                
Sbjct: 233 VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 292

Query: 364 ------------------------------------QSDVVVASSIVDMYAKCERIDNAK 387
                                               +  V VA+S++ M++    ++ A 
Sbjct: 293 VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEAC 352

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ---------------------- 425
            VF+ +   D++ WN +++AYA  G   E+ R F+ M+                      
Sbjct: 353 YVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVD 412

Query: 426 -------------LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
                          G+  N+   N+++  +   G+  +A+ +F  M     + +LI+W 
Sbjct: 413 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAM----TERDLISWN 468

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR- 531
           ++++   Q+    + +    E+L+ G   +  T   AL+AC++   L   + +H  +I  
Sbjct: 469 SMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVA 528

Query: 532 --HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
             HD  +   +  +LV MY K G + +AK+V    P  +   +NA+I G+A +    EA+
Sbjct: 529 GFHDFLI---VGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAV 585

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHA-GLVNEGLEL-----FVGMFSDHQVKPSMEHF 643
             +K +++KGI  + IT  ++L ACS    L+  G+ +       G  SD  VK S+   
Sbjct: 586 KAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSL--- 642

Query: 644 GCVVNLLSRCGNLDEA 659
              + + ++CG+L+ +
Sbjct: 643 ---ITMYAKCGDLNSS 655



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 8/184 (4%)

Query: 484 GNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
           G+ A +F Q+   + GI+     +   L   +++ S   G+A+H + I   + L      
Sbjct: 75  GDIAKVFLQQQHTDYGIR-CLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTN 133

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
           +L++MY+K GNI  A+ VFD    +    ++ M+SGY   GL  EA+ LF  +   G++P
Sbjct: 134 TLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEP 193

Query: 603 DSITFTNILNACSHAG-LVNEGLEL--FV---GMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           +     +++ ACS +G + +EG ++  FV   G+  D  V  ++ HF   + L+     L
Sbjct: 194 NGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKL 253

Query: 657 DEAL 660
            E +
Sbjct: 254 FEEM 257


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 197/606 (32%), Positives = 314/606 (51%), Gaps = 55/606 (9%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDM---YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
            H  ++K G     +  S L+++         L  A  VF+     N++ WN+M+ G   
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +      + ++  M   G  P   +   +L + A     +EG+Q HA  +  G ELD   
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
            +S+I+ Y++ G LEDA  VF    +RD+V+   LI  Y   G                 
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGD---------------- 164

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             + +A++VF+ I  RDVV WN ++  Y +     EA  LF +M    + P+  +  SV+
Sbjct: 165 --VRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVL 222

Query: 441 LGFLRNGQMNEAKDM-------------------FLQMQSL------------GVQ-PNL 468
               ++G +   +++                   F+ + S             G+   ++
Sbjct: 223 SACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDV 282

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           ++W TLI G T  +   EA+L FQEML +G  P+  T+   L AC  + ++  GR IH Y
Sbjct: 283 VSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVY 342

Query: 529 LIRH--DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
           + +    +   + + TSL+DMYAKCG+I  A +VF+    K L  +NAMI G+AMHG A 
Sbjct: 343 IDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRAN 402

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
            A  LF  +++ GI+PD IT   +L+ACSH+GL++ G  +F  +  D+ + P +EH+GC+
Sbjct: 403 AAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCM 462

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           ++LL   G   EA  +I  MP +PD  I  SLL  C      ELAE  ++ L+++EP+N 
Sbjct: 463 IDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENS 522

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTE 766
           G+YV LSN YA +GRW +V+++R+++  KG++K PGCS I+I   +H F+  D+ HP++ 
Sbjct: 523 GSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSR 582

Query: 767 EIYATL 772
           EIY  L
Sbjct: 583 EIYRML 588



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 134/488 (27%), Positives = 225/488 (46%), Gaps = 70/488 (14%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNG------------DFFARNEYVE------------- 119
           LL+ C   +    G+QIHA+++K G              +ARN  +E             
Sbjct: 89  LLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRD 148

Query: 120 ----TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
               T L+  YA    +  A ++F  +  ++V SW A+I         E+AL  F EM  
Sbjct: 149 VVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMR 208

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV-LKVGFDGCVFVASSLIDMYGKCGDLE 234
             V PD   L +VL AC   G +  GR +H  V    GF   + + ++ I +Y KCGD+E
Sbjct: 209 TNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVE 268

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
            A  +F+G+  ++VV+WN++I GY    L +EA+ +F EM   G  P  V++ S+L A A
Sbjct: 269 IASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACA 328

Query: 295 NLDALDEGKQAHAV--AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
           +L A+D G+  H      + G+   + L +S+I+ Y+K G +E A  VF+ M+ + + +W
Sbjct: 329 HLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSW 388

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA----AY 408
           N +I  +   G+     A++  D++++  +        N I   D+ L   L A      
Sbjct: 389 NAMIFGFAMHGR-----ANAAFDLFSRMRK--------NGIEPDDITLVGLLSACSHSGL 435

Query: 409 ADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
            DLGR      +F  + Q   I+P +  +  +I      G   EA+++   M    ++P+
Sbjct: 436 LDLGR-----HIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMP---MEPD 487

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST-------TTITCALSACTDVASLR 520
            + W +L+     +     A  F Q+++E  I+P         + I        DVA +R
Sbjct: 488 GVIWCSLLKACKMHGNLELAESFAQKLME--IEPENSGSYVLLSNIYATAGRWEDVARIR 545

Query: 521 ---NGRAI 525
              NG+ +
Sbjct: 546 EVLNGKGM 553



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 168/669 (25%), Positives = 272/669 (40%), Gaps = 116/669 (17%)

Query: 102 HARILKNGDFFARNEYVETKLV---VFYAKCDALDVASRLFCRLRVKNVFSWAAII-GLN 157
           HA+++K G       Y  +KL+   V     D L  A  +F   +  N+  W  ++ GL 
Sbjct: 2   HAQMVKTG--LHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLA 59

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
               L    L  +V M   G  P+ +  P +LK+C        GR +H  V+K+G +   
Sbjct: 60  SSSDLV-SPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDR 118

Query: 218 FVASSLIDMYGKCGDLEEA-------------------------------RKVFDGMIAR 246
           +  +SLI MY + G LE+A                               RKVFD +  R
Sbjct: 119 YAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITER 178

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           +VV+WN+MI GYV+N   EEA+ +F EM    V P   ++ S+LSA A   +++ G++ H
Sbjct: 179 DVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIH 238

Query: 307 A-VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY------ 359
             V   +G      + ++ I  YSK G +E A  +F  +  +D+V+WN LI  Y      
Sbjct: 239 TLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLY 298

Query: 360 ----------VQSGQS--DVVVAS------------------------------------ 371
                     ++SG+S  DV + S                                    
Sbjct: 299 KEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRT 358

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
           S++DMYAKC  I+ A QVFNS++ + +  WN ++  +A  GR+  A  LF +M+  GI P
Sbjct: 359 SLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEP 418

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
           + I+   ++     +G ++  + +F  + Q   + P L  +  +I  L       EA   
Sbjct: 419 DDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEI 478

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
              M    ++P        L AC    +L    +    L+  +       V  L ++YA 
Sbjct: 479 IHMM---PMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVL-LSNIYAT 534

Query: 551 CGNIHQAKRVFDI---SPSKELP---------VYNAMISGYAMHGLAVEALALFKN---- 594
            G      R+ ++      K++P         V +  I G  +H  + E   + +     
Sbjct: 535 AGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVL 594

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           L++ G  PD+      +      G +    E     F     KP  +    VV  L  C 
Sbjct: 595 LEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKL--TVVKNLRVCR 652

Query: 655 NLDEALRVI 663
           N  EA ++I
Sbjct: 653 NCHEATKLI 661



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 25/259 (9%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  C +   +  G+ IH  I K          + T L+  YAKC  ++ A ++F  +  
Sbjct: 323 VLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMH 382

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           K++ SW A+I      G +  A   F  M+++G+ PD+  L  +L AC   G +  GR +
Sbjct: 383 KSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHI 442

Query: 205 HGYVL-------KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIV 256
              V        K+   GC      +ID+ G  G  +EA ++   M +  + V W S++ 
Sbjct: 443 FKSVTQDYNITPKLEHYGC------MIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLK 496

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEP----TRVSVTSILSASANLDALDEGKQAHAVAVIN 312
               +G N E    F +  +E +EP    + V +++I + +   + +     A    V+N
Sbjct: 497 ACKMHG-NLELAESFAQKLME-IEPENSGSYVLLSNIYATAGRWEDV-----ARIREVLN 549

Query: 313 GMELDNVLGSSIINFYSKV 331
           G  +  V G S I   S V
Sbjct: 550 GKGMKKVPGCSSIEIDSVV 568


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 198/620 (31%), Positives = 337/620 (54%), Gaps = 38/620 (6%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK--CGDLEEARKVFDGMI 244
           +++K C ++  +   + +H   +  G      V + +I    K   GD+E AR VFD M 
Sbjct: 24  SLIKTCKSMAQL---KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMP 80

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
             N   WN+MI GY + G    A+ ++ EM   GV P   +   +L       A+  G++
Sbjct: 81  GPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRE 140

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            H   V  G   +  + +++I+ YS  G +  A  VF R  + D+VTWN++I+ Y +S Q
Sbjct: 141 LHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQ 200

Query: 365 SD------------VVVASSI--VDMYAKCERIDN---AKQVFNSIILRDV------VLW 401
            D             V+ SSI  V + + C ++ +    K+V   +  +D+      VL 
Sbjct: 201 FDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV--KDLKIEPVRVLE 258

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
           N L+  YA  G    A  +F  M+    S ++ISW +++ GF   GQ+  A++ F +M  
Sbjct: 259 NALIDMYAACGDMDTALGIFDNMK----SRDVISWTAIVTGFTNLGQVGLARNYFDKMP- 313

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
              + + ++WT +I G  Q +   E +  F+EM    IKP   T+   L+AC  + +L  
Sbjct: 314 ---ERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALEL 370

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G  I  Y+ ++++ + + +  +L+DMY  CGN+ +A R+F+  P ++   + A+I G A+
Sbjct: 371 GEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAI 430

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           +G   EAL +F  + +  I PD +T   +L AC+H+G+V++G + F  M + H ++P++ 
Sbjct: 431 NGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVA 490

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+GC+V+LL R G+L EA  VI  MP  P++ + GSLL  C    + E+AE  ++ +L+L
Sbjct: 491 HYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILEL 550

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           EP+N   YV L N YAA  RW ++ +VR +M ++G++K PGCS I++   +H FVA D+ 
Sbjct: 551 EPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQV 610

Query: 762 HPKTEEIYATLALLGMHVRL 781
           HP+++EIY+ L  + + ++ 
Sbjct: 611 HPQSKEIYSKLDEMSVDLKF 630



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 156/585 (26%), Positives = 264/585 (45%), Gaps = 68/585 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV--ASRLFCRL 142
           L++ C   + M   +QIH++ +  G     N  V  +++ F  K +  D+  A  +F  +
Sbjct: 25  LIKTC---KSMAQLKQIHSQTICTG--LISNPIVPAQIIAFCCKHELGDMEYARMVFDTM 79

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
              N F W  +I    RVG    A+  + EM E GV PD +  P +LK       V  GR
Sbjct: 80  PGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGR 139

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            +H +++K+GF   VFV ++LI +Y   G++  AR VFD     +VV WN MI GY ++ 
Sbjct: 140 ELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSK 199

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             +E++++F EM    V P+ +++ S+LSA + L  L+ GK+ H       +E   VL +
Sbjct: 200 QFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLEN 259

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
           ++I+ Y+  G ++ A  +F  M  RD+++W  ++  +   GQ                  
Sbjct: 260 ALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQ------------------ 301

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-- 440
           +  A+  F+ +  RD V W  ++  Y  + R  E   LF +MQ   I P+  +  S++  
Sbjct: 302 VGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTA 361

Query: 441 ---LGFLRNGQ-------MNEAK----------DMFLQ-------MQSLGVQP--NLITW 471
              LG L  G+        NE K          DM+         ++     P  + I+W
Sbjct: 362 CAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISW 421

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL-I 530
           T +I GL  N  G EA+  F +ML+  I P   T    L ACT    +  G+     +  
Sbjct: 422 TAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTT 481

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV---E 587
           +H +         +VD+  + G++ +A  V    P K     N+++ G  +    V   E
Sbjct: 482 QHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKP----NSIVWGSLLGACRVHRDE 537

Query: 588 ALALFKNLQQKGIDPDS----ITFTNILNACSHAGLVNEGLELFV 628
            +A     Q   ++P++    +   NI  AC+    ++E  +L +
Sbjct: 538 EMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMM 582



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 119/274 (43%), Gaps = 24/274 (8%)

Query: 25  LSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGE 84
           L++ +  K+ E D      + S+   I    +  + +E + L  EM+  N +        
Sbjct: 304 LARNYFDKMPERD------FVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVS 357

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  C +   +  G+ I A I KN      + +V   L+  Y  C  ++ A R+F  +  
Sbjct: 358 ILTACAHLGALELGEWIKAYIDKNE--IKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPH 415

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++  SW A+I      G  E+AL  F +M +  ++PD      VL AC   G V  G+  
Sbjct: 416 RDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKF 475

Query: 205 -------HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIV 256
                  HG    V   GC      ++D+ G+ G L+EA +V   M +  N + W S++ 
Sbjct: 476 FARMTTQHGIEPNVAHYGC------MVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLL- 528

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G  +   +EE   +  +  LE +EP   +V  +L
Sbjct: 529 GACRVHRDEEMAEMAAQQILE-LEPENGAVYVLL 561


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 222/729 (30%), Positives = 347/729 (47%), Gaps = 97/729 (13%)

Query: 89  CVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVF 148
           C   + +  G+ +HARIL  G F +    +   L+  YAKC     A+ +F  +  K+V 
Sbjct: 20  CTRHKQLRKGRALHARILVTGSFSSTQ--IANSLINLYAKCSHFSKANLVFDSINNKDVV 77

Query: 149 SWAAIIGLNCRV-----GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
           SW  +I    +       L    L   + M    + P+   L  V  A   L     GR 
Sbjct: 78  SWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQ 137

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
            H   +K      VF ASSL++MY K G + EAR +FD M  RN V+W +MI GY    L
Sbjct: 138 AHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQEL 197

Query: 264 NEEAIRVFYEMTLE--GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
            +EA  +F  M  E  G        TS+LSA      ++ G+Q H++A+           
Sbjct: 198 ADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAM----------- 246

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
                   K GL+                                V VA+++V MY KC 
Sbjct: 247 --------KNGLV------------------------------CIVSVANALVTMYVKCG 268

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI- 440
            +++A + F     ++ + W+ ++  +A  G S +A +LFY M   G  P+  +   VI 
Sbjct: 269 SLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVIN 328

Query: 441 --------------------LGF--------------LRNGQMNEAKDMFLQMQSLGVQP 466
                               LG+               + G + +A+  F  +Q    QP
Sbjct: 329 ACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQ----QP 384

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
           +++ WT++I+G  QN     A+  + +M   G+ P+  T+   L AC+++A+L  G+ +H
Sbjct: 385 DVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMH 444

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
             +I+++  L  PI ++L  MYAKCG++    R+F   P++++  +NAMISG + +G   
Sbjct: 445 AGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGN 504

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
           E L LF+ +  +G  PD++TF N+L+ACSH GLV+ G   F  MF +  + P++EH+ C+
Sbjct: 505 EGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACM 564

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           V++LSR G L EA   I +   D    +   LL+      + +L  Y  E L++L     
Sbjct: 565 VDILSRAGKLHEAKEFIESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLES 624

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTE 766
             YV LS+ Y A G+W +V +VR +MK +G+ K PGCSWI++    HVFV  D  HP+ +
Sbjct: 625 SAYVLLSSIYTALGKWEDVERVRGMMKARGVTKEPGCSWIELKSLTHVFVVGDNMHPQID 684

Query: 767 EIYATLALL 775
           EI   L LL
Sbjct: 685 EIRLGLKLL 693



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
           AL  CT    LR GRA+H  ++       T I  SL+++YAKC +  +A  VFD   +K+
Sbjct: 16  ALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKD 75

Query: 569 LPVYNAMISGYAM---HGLAVEALALFKNL--QQKGIDPDSITFTNILNACS 615
           +  +N +I+ ++    H  ++  + LF+ L    K I P++ T T +  A S
Sbjct: 76  VVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAAS 127


>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial; Flags: Precursor
 gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
 gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 787

 Score =  342 bits (878), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 224/765 (29%), Positives = 378/765 (49%), Gaps = 97/765 (12%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           Q+HA +L  G    R+    TKL+  YA   + D +  +F      + F +  +I  N  
Sbjct: 19  QLHAHLLVTGRL-RRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVW 77

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC-GALGWVGFGRAVHGYVLKVGFDGCVF 218
             L + A+  +  +  +      FV P+VL+AC G+   +  G  VHG ++K G D    
Sbjct: 78  CHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVDDDAV 137

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           + +SL+ MYG+ G+L +A KVFDGM  R++VAW++++   ++NG   +A+R+F  M  +G
Sbjct: 138 IETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDG 197

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           VEP  V++ S++   A L  L   +  H        +LD  L +S++  YSK G L  +E
Sbjct: 198 VEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSE 257

Query: 339 VVFSRMVERDIVTWNLLIASY----------------VQSG-QSDVVVASSI-------- 373
            +F ++ +++ V+W  +I+SY                ++SG + ++V   S+        
Sbjct: 258 RIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIG 317

Query: 374 ----------------------------VDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                                       V++YA+C ++ + + V   +  R++V WN+L+
Sbjct: 318 LIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLI 377

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISW----------------------------- 436
           + YA  G   +A  LF QM  + I P+  +                              
Sbjct: 378 SLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVS 437

Query: 437 -----NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
                NS+I  + ++G ++ A  +F Q++      +++TW +++ G +QN    EAI  F
Sbjct: 438 DEFVQNSLIDMYSKSGSVDSASTVFNQIK----HRSVVTWNSMLCGFSQNGNSVEAISLF 493

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC-LPTPIVTSLVDMYAK 550
             M  + ++ +  T    + AC+ + SL  G+ +H  LI   L  L T   T+L+DMYAK
Sbjct: 494 DYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLKDLFTD--TALIDMYAK 551

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           CG+++ A+ VF    S+ +  +++MI+ Y MHG    A++ F  + + G  P+ + F N+
Sbjct: 552 CGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNV 611

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L+AC H+G V EG + +  +     V P+ EHF C ++LLSR G+L EA R I  MP   
Sbjct: 612 LSACGHSGSVEEG-KYYFNLMKSFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLA 670

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
           DA + GSL++ C    + ++ + I   L  +  D+ G Y  LSN YA  G W E  ++R 
Sbjct: 671 DASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRS 730

Query: 731 IMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            MK   L+K PG S I+I +++  F A + +  +T+EIY  L  L
Sbjct: 731 AMKSSNLKKVPGYSAIEIDQKVFRFGAGEENRIQTDEIYRFLGNL 775


>gi|38347497|emb|CAE05845.2| OSJNBa0091C07.7 [Oryza sativa Japonica Group]
          Length = 749

 Score =  342 bits (878), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 204/673 (30%), Positives = 338/673 (50%), Gaps = 61/673 (9%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A  +F  +R +   SW A +  + R G    AL     M       D     + L AC  
Sbjct: 65  ARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACAR 124

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
              +  G  VH  V+K G D    V +SL+D Y  C DL+ AR +FD + A N + W+ M
Sbjct: 125 GRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPM 184

Query: 255 IVGYVQ-------------------------------NGLNE---EAIRVFYEMTLE-GV 279
           +V  V+                                G NE   +++ +F ++  E GV
Sbjct: 185 VVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGV 244

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P   +  S+L A   + AL+ G+  H   + +G E + ++ S++++ Y + G ++DA +
Sbjct: 245 MPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVM 304

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
           V++ +    ++T N LIA ++  G                  R ++AK VF+ +   D  
Sbjct: 305 VYNGLQMPSLITSNTLIAGFISMG------------------RTEDAKLVFSQMTEHDSG 346

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
            +N ++ AYAD GR  +  R+F  M       N+++ NS++   L+NG++ E + +F Q+
Sbjct: 347 SYNLMIKAYADEGRLEDCRRMFEMMPRR----NMVTLNSMMSVLLQNGKLEEGRKLFEQI 402

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
           +    + N +TW ++ISG  QN   +EA+  F  M    I+ S +T    L AC  + ++
Sbjct: 403 KD---ERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLHACATIGTI 459

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
             G+ +H  L +        + T+LVDMY+KCG +  A+  F    S  +  + ++I+G 
Sbjct: 460 EQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSPNVASWTSLINGL 519

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
           A +G  +EA+  F  + +  + P+ ITF  IL A + AGLVN+G+  F  M S + V P+
Sbjct: 520 AQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSMES-YGVVPT 578

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           +EH+ C V+LL R   + EA + I  MP   D  + G+LL+ C  + + E+ E ++E L 
Sbjct: 579 VEHYTCAVDLLGRARRVREAEKFISKMPIPADGVVWGALLTACWYTMDLEMGEKVAEKLF 638

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
            +   +   YVA+SN YA  G+W +V +VR  ++    +K PGCSWI++ + +HVF+  D
Sbjct: 639 YMGTKHISAYVAMSNIYAKLGKWEDVVKVRTRLRSINAKKEPGCSWIEVKDMVHVFLVED 698

Query: 760 RSHPKTEEIYATL 772
           R+HP+ EEIY  L
Sbjct: 699 RNHPEREEIYLML 711



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 140/526 (26%), Positives = 244/526 (46%), Gaps = 79/526 (15%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +++ ++  ++R+A+     M      +    Y   L  C   R +  G Q+H ++
Sbjct: 79  SWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQV 138

Query: 106 LKNG--DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN----------------- 146
           +K+G  DF      V   L+ FY+ C  LD A  LF  L   N                 
Sbjct: 139 VKSGSDDF----PVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLL 194

Query: 147 ---------------VFSWAAIIGLNCRVGLSE---KALIGFVEM-QEDGVSPDNFVLPN 187
                          +F+W AII    R G +E   K+L  FV++  EDGV P+ F   +
Sbjct: 195 SDALDLLQRMPPSRDLFAWTAIISGYAR-GANEYCCKSLELFVQLLAEDGVMPNEFTYDS 253

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           VL+AC  +G + FGR++HG +++ GF+    + S+L+D+Y + G +++A  V++G+   +
Sbjct: 254 VLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPS 313

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           ++  N++I G++  G  E+A  VF +MT    E    S   ++ A A     DEG+    
Sbjct: 314 LITSNTLIAGFISMGRTEDAKLVFSQMT----EHDSGSYNLMIKAYA-----DEGRLEDC 364

Query: 308 VAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMV-ERDIVTWNLLIASYVQSGQS 365
             +   M   N++  +S+++   + G LE+   +F ++  ER+ VTWN +I+ YVQ+ QS
Sbjct: 365 RRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQS 424

Query: 366 DVVV--------------ASSIVDMYAKCERIDNAKQ--VFNSIILRDVVLWN-----TL 404
              +              AS+   +   C  I   +Q  + ++++ +     N      L
Sbjct: 425 SEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTAL 484

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           +  Y+  G   +A   F  +    +SPN+ SW S+I G  +NG   EA   F +M    V
Sbjct: 485 VDMYSKCGCVSDARAAFSCI----MSPNVASWTSLINGLAQNGHWMEAIVQFARMLKNNV 540

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
           +PN IT+  ++    +    N+ + FF  M   G+ P+    TCA+
Sbjct: 541 KPNEITFLGILMASARAGLVNKGMRFFHSMESYGVVPTVEHYTCAV 586



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 132 LDVASRLFCRLR-VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLK 190
           L+   +LF +++  +N  +W ++I    +   S +AL  F  M    +       P +L 
Sbjct: 392 LEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLH 451

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA 250
           AC  +G +  G+ VH  + K  F+   +V ++L+DMY KCG + +AR  F  +++ NV +
Sbjct: 452 ACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSPNVAS 511

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           W S+I G  QNG   EAI  F  M    V+P  ++   IL ASA    +++G +      
Sbjct: 512 WTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMR-----F 566

Query: 311 INGMELDNVLG-----SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
            + ME   V+      +  ++   +   + +AE   S+M +  D V W  L+ +
Sbjct: 567 FHSMESYGVVPTVEHYTCAVDLLGRARRVREAEKFISKMPIPADGVVWGALLTA 620


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  342 bits (878), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 229/806 (28%), Positives = 378/806 (46%), Gaps = 99/806 (12%)

Query: 61   REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYT---GQQIHARILKNGDFFARNEY 117
             EAV L  +M     +    +   L+  C   R  Y    G Q+H  ++K G     + Y
Sbjct: 827  EEAVGLFCQMWGLGVEPNGFMVASLITAC--SRSGYMADEGFQVHGFVVKTG--ILGDVY 882

Query: 118  VETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177
            V T LV FY     +  A +LF  +   NV SW +++      G   + L  +  M+++G
Sbjct: 883  VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 942

Query: 178  VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
            VS +      V  +CG L     G  V G++++ GF+  V VA+SLI M+     +EEA 
Sbjct: 943  VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEAC 1002

Query: 238  KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
             VFD M   ++++WN+MI  Y  +GL  E++R F+ M     E    +++S+LS  +++D
Sbjct: 1003 YVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVD 1062

Query: 298  ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
             L  G+  H + V  G++ +  + ++++  YS+ G  EDAE+VF  M ERD+++WN ++A
Sbjct: 1063 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMA 1122

Query: 358  SYVQ---------------------------------------------------SGQSD 366
             YVQ                                                   +G  D
Sbjct: 1123 CYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHD 1182

Query: 367  -VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
             ++V +++V MY K   +  AK+V  ++   D V WN L+  +A+     EA + +  ++
Sbjct: 1183 FLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIR 1242

Query: 426  LEGISPNIISW------------------------------------NSVILGFLRNGQM 449
             +GI  N I+                                     NS+I  + + G +
Sbjct: 1243 EKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDL 1302

Query: 450  NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
            N +  +F     LG   + ITW  +++    + CG EA+  F EM   G+     + +  
Sbjct: 1303 NSSNYIF---DGLG-NKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGG 1358

Query: 510  LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
            L+A  ++A L  G+ +HG +I+        +  + +DMY KCG +H   ++     ++  
Sbjct: 1359 LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSR 1418

Query: 570  PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
              +N +IS +A HG   +A   F  + + G  PD +TF ++L+AC+H GLV+EGL  +  
Sbjct: 1419 LSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDS 1478

Query: 630  MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
            M  +  V P +EH  C+++LL R G L  A   I  MP  P+     SLL+ C      E
Sbjct: 1479 MTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLE 1538

Query: 690  LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
            LA   +EHLL+L+P +   YV  SN  A SG+W +V  +R  M    ++K P CSW+++ 
Sbjct: 1539 LARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLK 1598

Query: 750  EELHVFVACDRSHPKTEEIYATLALL 775
            +++H F   ++ HP+   I A L  L
Sbjct: 1599 DKVHSFGMGEKYHPQASRISAKLGEL 1624



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 155/570 (27%), Positives = 268/570 (47%), Gaps = 95/570 (16%)

Query: 269 RVFYEMTLEGVEPTRVSVT---SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           R+   + L    PTR+  +    IL    +  A  +G   H   + NG   D  L + +I
Sbjct: 13  RLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLI 72

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ--------------------- 364
            FY KVG +  A  VF  M ER +V+W  +++ Y Q+G+                     
Sbjct: 73  IFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQF 132

Query: 365 -------------------------------SDVVVASSIVDMYAKCERIDNAKQVFNSI 393
                                           ++ V S++VD ++KC ++++A  +F ++
Sbjct: 133 TYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTM 192

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI------------- 440
           + RDVV WN ++  YA  G + ++  +F  M   G+ P+  +  SV+             
Sbjct: 193 MERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIAN 252

Query: 441 --------LGF--------------LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
                   LG+               +NG +  AKD+   M    ++ +L + T LI+G 
Sbjct: 253 QIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGM----LKKDLFSSTALITGY 308

Query: 479 TQNSCGN-EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
                 + +A+  F+EM +  I      +   L+ C ++AS   G  IH + +++     
Sbjct: 309 AHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYD 368

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             +  +L+DMYAK G I  AKR FD    K +  + ++ISGYA HG    A++L+K ++ 
Sbjct: 369 VAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMES 428

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
           KG  P+ +TF ++L ACSH GL  EG E F  M + + +KP  EH+ C+V+L +R G L+
Sbjct: 429 KGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLE 488

Query: 658 EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
           EA  ++  +    +A + G++L          L +  + +L  ++P+N  NYV L++ Y+
Sbjct: 489 EAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYS 548

Query: 718 ASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
           A+G W++  ++R +M+E+  +KN G S+ Q
Sbjct: 549 AAGLWDDAWKIRKLMEERSTKKNAGYSFFQ 578



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 170/677 (25%), Positives = 313/677 (46%), Gaps = 107/677 (15%)

Query: 122  LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
            L+  Y+K   ++ A  +F  +R +N  SW+ ++    RVGL E+A+  F +M   GV P+
Sbjct: 785  LINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPN 844

Query: 182  NFVLPNVLKACGALGWVG-FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
             F++ +++ AC   G++   G  VHG+V+K G  G V+V ++L+  YG  G +  A+K+F
Sbjct: 845  GFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLF 904

Query: 241  DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
            + M   NVV+W S++VGY  +G   E + V+  M  EGV   + +  ++ S+   L+   
Sbjct: 905  EEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQV 964

Query: 301  EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
             G Q     +  G E    + +S+I+ +S    +E+A  VF  M E DI++WN +I++Y 
Sbjct: 965  LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYA 1024

Query: 361  QSG----------------------------------------------------QSDVV 368
              G                                                     S+V 
Sbjct: 1025 HHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVC 1084

Query: 369  VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
            + ++++ +Y++  R ++A+ VF ++  RD++ WN+++A Y   G+  +  ++  ++   G
Sbjct: 1085 ICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMG 1144

Query: 429  ISPNIISW-----------------------------------NSVILGFLRNGQMNEAK 453
               N +++                                   N+++  + + G M EAK
Sbjct: 1145 KVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAK 1204

Query: 454  DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
             +   M     QP+ +TW  LI G  +N   NEA+  ++ + E GI  +  T+   L AC
Sbjct: 1205 KVLQTMP----QPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGAC 1260

Query: 514  TDVAS-LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
            +     L++G  IH +++         +  SL+ MYAKCG+++ +  +FD   +K    +
Sbjct: 1261 SAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITW 1320

Query: 573  NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF----- 627
            NAM++  A HG   EAL +F  ++  G++ D  +F+  L A ++  ++ EG +L      
Sbjct: 1321 NAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIK 1380

Query: 628  VGMFSD-HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
            +G  SD H    +M+ +G       +CG + + L+ +L  P +        L+S   +  
Sbjct: 1381 LGFESDLHVTNAAMDMYG-------KCGEMHDVLK-MLPQPINRSRLSWNILISAFARHG 1432

Query: 687  ETELAEYISEHLLQLEP 703
              + A      +L+L P
Sbjct: 1433 CFQKARETFHEMLKLGP 1449



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 156/583 (26%), Positives = 277/583 (47%), Gaps = 38/583 (6%)

Query: 48  FHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILK 107
           F +I S     ++ EA+ LL+    R   + P +Y ++LQ C+ K+    G  IH  ++ 
Sbjct: 2   FSKIQSACNLGRLAEALKLLSSNPTR---LDPSLYLKILQLCIDKKAKKQGHLIHTHLIT 58

Query: 108 NGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
           NG  F  + ++ TKL++FY K   +  A  +F  +  ++V SW A++    + G  EKA 
Sbjct: 59  NG--FGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAF 116

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
           + F +M+  GV  + F   + L+AC +L  +  G  V G + K  F   +FV S+L+D +
Sbjct: 117 VLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFH 176

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            KCG +E+A  +F  M+ R+VV+WN+MI GY   G  +++  +F  M   G+ P   ++ 
Sbjct: 177 SKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLG 236

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S+L ASA    L    Q H +    G    +++   +IN Y+K G L  A+ +   M+++
Sbjct: 237 SVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKK 296

Query: 348 DIVTWNLLIASYVQSG------------------QSDVVVASSIVDMYAKCERIDNAKQV 389
           D+ +   LI  Y   G                    D V+  S++++ A         Q+
Sbjct: 297 DLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQI 356

Query: 390 FNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
            ++  L+     DV + N L+  YA  G   +A R F +M+      N+ISW S+I G+ 
Sbjct: 357 -HAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEME----EKNVISWTSLISGYA 411

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPST 503
           ++G  + A  ++ +M+S G +PN +T+ +L+   +      E    F  M+ +  IKP  
Sbjct: 412 KHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRA 471

Query: 504 TTITCALSACTDVASLRNGRAIHGYL-IRHDLCLPTPIV-TSLVDMYAKCGNIHQAKRVF 561
              +C +        L     +   + I+H+  L   I+  S +  Y   G    A  +F
Sbjct: 472 EHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGK-EAASNLF 530

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           ++ P   +  Y  + S Y+  GL  +A  + K ++++    ++
Sbjct: 531 NMQPENSVN-YVVLASIYSAAGLWDDAWKIRKLMEERSTKKNA 572



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 141/556 (25%), Positives = 259/556 (46%), Gaps = 110/556 (19%)

Query: 201  GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
            G+A+H + +    +  +F  ++LI+MY K G++E AR VFD M  RN  +W++M+ GYV+
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 261  NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL-DEGKQAHAVAVINGMELDNV 319
             GL EEA+ +F +M   GVEP    V S+++A +    + DEG Q H   V  G+  D  
Sbjct: 823  VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 882

Query: 320  LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------- 363
            +G+++++FY  +GL+ +A+ +F  M + ++V+W  L+  Y  SG                
Sbjct: 883  VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 942

Query: 364  ------------------------------------QSDVVVASSIVDMYAKCERIDNAK 387
                                                +  V VA+S++ M++    ++ A 
Sbjct: 943  VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEAC 1002

Query: 388  QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ---------------------- 425
             VF+ +   D++ WN +++AYA  G   E+ R F+ M+                      
Sbjct: 1003 YVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVD 1062

Query: 426  -------------LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
                           G+  N+   N+++  +   G+  +A+ +F  M     + +LI+W 
Sbjct: 1063 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAM----TERDLISWN 1118

Query: 473  TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI-- 530
            ++++   Q+    + +    E+L+ G   +  T   AL+AC++   L   + +H  +I  
Sbjct: 1119 SMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVA 1178

Query: 531  -RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
              HD  +   +  +LV MY K G + +AK+V    P  +   +NA+I G+A +    EA+
Sbjct: 1179 GFHDFLI---VGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAV 1235

Query: 590  ALFKNLQQKGIDPDSITFTNILNACSHA-GLVNEGLEL-----FVGMFSDHQVKPSMEHF 643
              +K +++KGI  + IT  ++L ACS    L+  G+ +       G  SD  VK S+   
Sbjct: 1236 KAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSL--- 1292

Query: 644  GCVVNLLSRCGNLDEA 659
               + + ++CG+L+ +
Sbjct: 1293 ---ITMYAKCGDLNSS 1305



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 8/184 (4%)

Query: 484 GNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
           G+ A +F Q+   + GI+     +   L   +++ S   G+A+H + I   + L      
Sbjct: 725 GDIAKVFLQQQHTDYGIR-CLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTN 783

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
           +L++MY+K GNI  A+ VFD    +    ++ M+SGY   GL  EA+ LF  +   G++P
Sbjct: 784 TLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEP 843

Query: 603 DSITFTNILNACSHAG-LVNEGLEL--FV---GMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           +     +++ ACS +G + +EG ++  FV   G+  D  V  ++ HF   + L+     L
Sbjct: 844 NGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKL 903

Query: 657 DEAL 660
            E +
Sbjct: 904 FEEM 907


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  342 bits (878), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 306/567 (53%), Gaps = 31/567 (5%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L +AR +FD M  R+ V +N MI  +  +GL   A R ++++     E   VS   +L+A
Sbjct: 116 LADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA-RHYFDLA---PEKDAVSWNGMLAA 171

Query: 293 SANLDALDEGKQAHAVAVING-MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
                 +  G+   A  + N   E D +  +++++ Y + G + +A  +F RM  RD+V+
Sbjct: 172 Y-----VRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVS 226

Query: 352 WNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
           WN++++ Y + G               DV   +++V  YA+   ++ A++VF+++  R+ 
Sbjct: 227 WNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA 286

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
           V WN ++AAY       EA  LF  M       N+ SWN+++ G+ + G + EAK +F  
Sbjct: 287 VSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTMLTGYAQAGMLEEAKAVFDT 342

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           M     Q + ++W  +++  +Q  C  E +  F EM   G   + +   C LS C D+A+
Sbjct: 343 MP----QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 398

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           L  G  +HG LIR    +   +  +L+ MY KCGN+  A+  F+    +++  +N MI+G
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAG 458

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           YA HG   EAL +F  ++     PD IT   +L ACSH+GLV +G+  F  M  D  V  
Sbjct: 459 YARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 518

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
             EH+ C+++LL R G L EA  ++  MP +PD+ + G+LL         EL    +E +
Sbjct: 519 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKI 578

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
            +LEP+N G YV LSN YA+SG+W +  ++R +M+E+G++K PG SWI++  ++H F A 
Sbjct: 579 FELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAG 638

Query: 759 DRSHPKTEEIYATLALLGMHVRLVSKV 785
           D  HP+ E+IYA L  L M ++    V
Sbjct: 639 DCVHPEKEKIYAFLEDLDMRMKKAGYV 665



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 126/252 (50%), Gaps = 12/252 (4%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN      ++  YA+   L+ A  +F  +  K+  SWAA++    + G SE+ L  F+EM
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              G   +      VL  C  +  +  G  +HG +++ G+    FV ++L+ MY KCG++
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 434

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           E+AR  F+ M  R+VV+WN+MI GY ++G  +EA+ +F  M     +P  +++  +L+A 
Sbjct: 435 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDAEVVFSRM-VE 346
           ++   +++G     ++    M  D  + +       +I+   + G L +A  +   M  E
Sbjct: 495 SHSGLVEKG-----ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 549

Query: 347 RDIVTWNLLIAS 358
            D   W  L+ +
Sbjct: 550 PDSTMWGALLGA 561



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 157/361 (43%), Gaps = 64/361 (17%)

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ--------- 364
           +E + +  +  I  + + G + DAE +F+ M  R   T+N ++A Y  +G+         
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 365 --------------SDVVVASSIVDM---------------------YAKCERIDNAKQV 389
                           + V+SS+ D                      +A    +  A+  
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F+    +D V WN +LAAY   GR  EA  LF          ++ISWN+++ G+++ G+M
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDVISWNALMSGYVQWGKM 209

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           +EA+++F +M    V    ++W  ++SG  +     EA    + + +        T T  
Sbjct: 210 SEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEA----RRLFDAAPVRDVFTWTAV 261

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           +S       L   R +   +   +      +V +    Y +   + +AK +F++ P + +
Sbjct: 262 VSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAA----YIQRRMMDEAKELFNMMPCRNV 317

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +N M++GYA  G+  EA A+F  + QK    D++++  +L A S  G   E L+LF+ 
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 630 M 630
           M
Sbjct: 374 M 374



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 139/349 (39%), Gaps = 95/349 (27%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VF  ++++  Y + G LEEAR+VFD M  RN V+WN+M+  Y+Q  + +EA  +F  M  
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPC 314

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
             V            AS N                           +++  Y++ G+LE+
Sbjct: 315 RNV------------ASWN---------------------------TMLTGYAQAGMLEE 335

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSD------------------------------ 366
           A+ VF  M ++D V+W  ++A+Y Q G S+                              
Sbjct: 336 AKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCAD 395

Query: 367 ----------------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                                   V ++++ MY KC  +++A+  F  +  RDVV WNT+
Sbjct: 396 IAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTM 455

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLG 463
           +A YA  G   EA  +F  M+     P+ I+   V+     +G + +    F  M    G
Sbjct: 456 IAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFG 515

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           V      +T +I  L +     EA    ++M     +P +T     L A
Sbjct: 516 VTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM---PFEPDSTMWGALLGA 561



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 14/252 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEM-KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHAR 104
           S+   +++ S+     E + L  EM +C  + +    +  +L  C     +  G Q+H R
Sbjct: 350 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEW-VNRSAFACVLSTCADIAALECGMQLHGR 408

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           +++ G  +    +V   L+  Y KC  ++ A   F  +  ++V SW  +I    R G  +
Sbjct: 409 LIRAG--YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGK 466

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA---- 220
           +AL  F  M+     PD+  L  VL AC   G V  G +   Y   +  D  V       
Sbjct: 467 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGIS---YFYSMHHDFGVTAKPEHY 523

Query: 221 SSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           + +ID+ G+ G L EA  +   M    +   W +++ G  +   N E  R   E   E +
Sbjct: 524 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL-GASRIHRNPELGRSAAEKIFE-L 581

Query: 280 EPTRVSVTSILS 291
           EP    +  +LS
Sbjct: 582 EPENAGMYVLLS 593



 Score = 46.6 bits (109), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           +  + + G +  A+R+F   P +    YNAM++GY+ +G    A +LF+ + +    PD+
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR----PDN 100

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
            ++  +L    HA  V+  L    G+F +  V+ S+  +  +++  +  G +  A R   
Sbjct: 101 YSYNTLL----HALAVSSSLADARGLFDEMPVRDSVT-YNVMISSHANHGLVSLA-RHYF 154

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
            +  + DA     +L+  V++   E A  +     + +     ++ AL + Y   G+ +E
Sbjct: 155 DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVI---SWNALMSGYVQWGKMSE 211

Query: 725 VSQVRDIM 732
             ++ D M
Sbjct: 212 ARELFDRM 219


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  342 bits (877), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 200/581 (34%), Positives = 330/581 (56%), Gaps = 45/581 (7%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI    K G L EARK+FDG+  R+VV W  +I GY++ G   EA  +F  +        
Sbjct: 52  LIGKLCKVGKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVD------- 104

Query: 283 RVSVTSILSASANLDALDEGKQ-AHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVV 340
             S  ++++ +A +      KQ + A  +   M   N++  +++I+ Y++ G ++ A  +
Sbjct: 105 --SRKNVVTWTAMVSGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALEL 162

Query: 341 FSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAK 387
           F  M ER+ V+WN +I + VQ G+              DV+  +++VD  AK  ++D A+
Sbjct: 163 FDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEAR 222

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
           ++F+ +  R+++ WN ++  Y    R  EA +LF  M       +  SWN++I GF+RN 
Sbjct: 223 RLFDCMPERNIISWNAMITGYTYNNRIDEADQLFQVMP----ERDFASWNTMITGFIRNR 278

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTI 506
           ++N A  +F +M     Q N+I+WT +I+G  +N    EA+  F +ML  G +KP+  T 
Sbjct: 279 EINRACGLFDRMP----QKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTY 334

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS-LVDMYAKCGNIHQAKRVFD--I 563
              LSAC+D+A L  G+ IH  LI   +     +VTS L++MY+K G +  A+++FD  +
Sbjct: 335 VSILSACSDLAGLVEGQQIH-QLISKSVHQENEVVTSALINMYSKSGELIAARKMFDNGL 393

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
              ++L  +N+MI+ YA HG   EA+ ++  +++ G  P  +T+ N+L ACSHAGLV +G
Sbjct: 394 VCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHAGLVEKG 453

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI----IGSLL 679
           +E F  +  D  +    EH+ C+V+L  R G L + L  I    CD DA +     G++L
Sbjct: 454 MEFFKELVRDESLPLREEHYTCLVDLCGRAGRLKDVLNFI---NCD-DARLSRSFYGAIL 509

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           S C   +E  +A+ + + +L+   D+ G YV +SN YAASG+  + +++R  MKEKGL+K
Sbjct: 510 SACNVHSEVSIAKEVVKKVLETGSDDAGTYVMMSNIYAASGKREKAAEMRMKMKEKGLKK 569

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            PGCSW++IG + H+FV  D+SHP+ E + + ++ L   +R
Sbjct: 570 QPGCSWVKIGNQTHLFVVGDKSHPQFEALDSIVSDLRNKMR 610



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/475 (23%), Positives = 210/475 (44%), Gaps = 65/475 (13%)

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           ER +   NL+ + Y  S +  V     ++    K  ++  A+++F+ +  RDVV W  ++
Sbjct: 25  ERSVQLRNLVRSIYSSSSKPRVPRPEWLIGKLCKVGKLAEARKLFDGLPERDVVTWTDVI 84

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
             Y  LG   EA  LF ++       N+++W +++ G+LR+ Q++ A+ +F +M     +
Sbjct: 85  TGYIKLGNMREARELFDRVDSR---KNVVTWTAMVSGYLRSKQLSVAETLFQEMP----E 137

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            N+++W T+I G  Q+   ++A+  F EM E       T I          A ++ GR  
Sbjct: 138 RNIVSWNTMIDGYAQSGRIDKALELFDEMPERNTVSWNTMIK---------ALVQRGRID 188

Query: 526 HGYLIRHDLCLPTPIV-TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
               +   + +   I  T++VD  AK G + +A+R+FD  P + +  +NAMI+GY  +  
Sbjct: 189 EAMNLFERMPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYTYNNR 248

Query: 585 AVEALALFKNLQQKGI---------------------------DPDSITFTNILNACSHA 617
             EA  LF+ + ++                               + I++T ++      
Sbjct: 249 IDEADQLFQVMPERDFASWNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGYVEN 308

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL-----DEALRVILTMPCDPDA 672
               E L++F  M  D  VKP++   G  V++LS C +L      + +  +++     + 
Sbjct: 309 KENEEALKVFSKMLRDGCVKPNV---GTYVSILSACSDLAGLVEGQQIHQLISKSVHQEN 365

Query: 673 HIIGS-LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
            ++ S L++   KS E   A  + ++ L  + D   ++ ++   YA  G   E  ++ D 
Sbjct: 366 EVVTSALINMYSKSGELIAARKMFDNGLVCQRD-LISWNSMIAVYAHHGHGKEAIEMYDQ 424

Query: 732 MKEKGLRKNP--------GCS---WIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           M++ G + +          CS    ++ G E    +  D S P  EE Y  L  L
Sbjct: 425 MRKHGFKPSEVTYLNLLFACSHAGLVEKGMEFFKELVRDESLPLREEHYTCLVDL 479



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 171/373 (45%), Gaps = 46/373 (12%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           +N    T +V  Y +   L VA  LF  +  +N+ SW  +I    + G  +KAL  F EM
Sbjct: 107 KNVVTWTAMVSGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFDEM 166

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
            E      N     ++KA    G +    A++ +      D  V   ++++D   K G +
Sbjct: 167 PERNTVSWN----TMIKALVQRGRID--EAMNLFERMPIKD--VISWTAMVDGLAKNGKV 218

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           +EAR++FD M  RN+++WN+MI GY  N   +EA ++F  M           +T  +   
Sbjct: 219 DEARRLFDCMPERNIISWNAMITGYTYNNRIDEADQLFQVMPERDFASWNTMITGFIRNR 278

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
                    +   A  + + M   NV+  +++I  Y +    E+A  VFS+M+    V  
Sbjct: 279 ---------EINRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKP 329

Query: 353 NL------------------------LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388
           N+                        LI+  V   Q + VV S++++MY+K   +  A++
Sbjct: 330 NVGTYVSILSACSDLAGLVEGQQIHQLISKSVH--QENEVVTSALINMYSKSGELIAARK 387

Query: 389 VFNS--IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
           +F++  +  RD++ WN+++A YA  G   EA  ++ QM+  G  P+ +++ +++      
Sbjct: 388 MFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHA 447

Query: 447 GQMNEAKDMFLQM 459
           G + +  + F ++
Sbjct: 448 GLVEKGMEFFKEL 460



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 7/160 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEI--YGELLQGCVYKRDMYTGQQIHA 103
           S+   I+   + K+  EA+ + ++M  R+  + P +  Y  +L  C     +  GQQIH 
Sbjct: 297 SWTAMITGYVENKENEEALKVFSKM-LRDGCVKPNVGTYVSILSACSDLAGLVEGQQIHQ 355

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV--KNVFSWAAIIGLNCRVG 161
            I K+      NE V + L+  Y+K   L  A ++F    V  +++ SW ++I +    G
Sbjct: 356 LISKS--VHQENEVVTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHG 413

Query: 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
             ++A+  + +M++ G  P      N+L AC   G V  G
Sbjct: 414 HGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHAGLVEKG 453


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  342 bits (877), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 188/574 (32%), Positives = 309/574 (53%), Gaps = 31/574 (5%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L+        L +AR +FD M  R+ V +N MI  +  +GL   A R ++++     E
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA-RHYFDLA---PE 159

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVING-MELDNVLGSSIINFYSKVGLLEDAEV 339
              VS   +L+A      +  G+   A  + N   E D +  +++++ Y + G + +A  
Sbjct: 160 KDAVSWNGMLAAY-----VRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARE 214

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNA 386
           +F RM  RD+V+WN++++ Y + G               DV   +++V  YA+   ++ A
Sbjct: 215 LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEA 274

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
           ++VF+++  R+ V WN ++AAY       EA  LF  M       N+ SWN+++ G+ + 
Sbjct: 275 RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTMLTGYAQA 330

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G + EAK +F  M     Q + ++W  +++  +Q  C  E +  F EM   G   + +  
Sbjct: 331 GMLEEAKAVFDTMP----QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF 386

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
            C LS C D+A+L  G  +HG LIR    +   +  +L+ MY KCGN+  A+  F+    
Sbjct: 387 ACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEE 446

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           +++  +N MI+GYA HG   EAL +F  ++     PD IT   +L ACSH+GLV +G+  
Sbjct: 447 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 506

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  M  D  V    EH+ C+++LL R G L EA  ++  MP +PD+ + G+LL       
Sbjct: 507 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHR 566

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
             EL    +E + +LEP+N G YV LSN YA+SG+W +  ++R +M+E+G++K PG SWI
Sbjct: 567 NPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWI 626

Query: 747 QIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           ++  ++H F A D  HP+ E+IYA L  L M ++
Sbjct: 627 EVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMK 660



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 126/252 (50%), Gaps = 12/252 (4%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN      ++  YA+   L+ A  +F  +  K+  SWAA++    + G SE+ L  F+EM
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              G   +      VL  C  +  +  G  +HG +++ G+    FV ++L+ MY KCG++
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 434

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           E+AR  F+ M  R+VV+WN+MI GY ++G  +EA+ +F  M     +P  +++  +L+A 
Sbjct: 435 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDAEVVFSRM-VE 346
           ++   +++G     ++    M  D  + +       +I+   + G L +A  +   M  E
Sbjct: 495 SHSGLVEKG-----ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 549

Query: 347 RDIVTWNLLIAS 358
            D   W  L+ +
Sbjct: 550 PDSTMWGALLGA 561



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 157/361 (43%), Gaps = 64/361 (17%)

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ--------- 364
           +E + +  +  I  + + G + DAE +F+ M  R   T+N ++A Y  +G+         
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 365 --------------SDVVVASSIVDM---------------------YAKCERIDNAKQV 389
                           + V+SS+ D                      +A    +  A+  
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F+    +D V WN +LAAY   GR  EA  LF          ++ISWN+++ G+++ G+M
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDVISWNALMSGYVQWGKM 209

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           +EA+++F +M    V    ++W  ++SG  +     EA    + + +        T T  
Sbjct: 210 SEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEA----RRLFDAAPVRDVFTWTAV 261

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           +S       L   R +   +   +         ++V  Y +   + +AK +F++ P + +
Sbjct: 262 VSGYAQNGMLEEARRVFDAMPERNAV----SWNAMVAAYIQRRMMDEAKELFNMMPCRNV 317

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +N M++GYA  G+  EA A+F  + QK    D++++  +L A S  G   E L+LF+ 
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 630 M 630
           M
Sbjct: 374 M 374



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 172/448 (38%), Gaps = 111/448 (24%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++  Y +   ++ A  LF      +V SW A++    + G   +A   F  M    V   
Sbjct: 168 MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSW 227

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC----VFVASSLIDMYGKCGDLEEAR 237
           N ++          G+   G  V    L   FD      VF  ++++  Y + G LEEAR
Sbjct: 228 NIMVS---------GYARRGDMVEARRL---FDAAPVRDVFTWTAVVSGYAQNGMLEEAR 275

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
           +VFD M  RN V+WN+M+  Y+Q  + +EA  +F  M    V            AS N  
Sbjct: 276 RVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV------------ASWN-- 321

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
                                    +++  Y++ G+LE+A+ VF  M ++D V+W  ++A
Sbjct: 322 -------------------------TMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLA 356

Query: 358 SYVQSGQSD--------------------------------------------------- 366
           +Y Q G S+                                                   
Sbjct: 357 AYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV 416

Query: 367 -VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
              V ++++ MY KC  +++A+  F  +  RDVV WNT++A YA  G   EA  +F  M+
Sbjct: 417 GCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMR 476

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCG 484
                P+ I+   V+     +G + +    F  M    GV      +T +I  L +    
Sbjct: 477 TTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRL 536

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSA 512
            EA    ++M     +P +T     L A
Sbjct: 537 AEAHDLMKDM---PFEPDSTMWGALLGA 561



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 14/252 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEM-KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHAR 104
           S+   +++ S+     E + L  EM +C  + +    +  +L  C     +  G Q+H R
Sbjct: 350 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEW-VNRSAFACVLSTCADIAALECGMQLHGR 408

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           +++ G  +    +V   L+  Y KC  ++ A   F  +  ++V SW  +I    R G  +
Sbjct: 409 LIRAG--YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGK 466

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA---- 220
           +AL  F  M+     PD+  L  VL AC   G V  G +   Y   +  D  V       
Sbjct: 467 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGIS---YFYSMHHDFGVTAKPEHY 523

Query: 221 SSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           + +ID+ G+ G L EA  +   M    +   W +++ G  +   N E  R   E   E +
Sbjct: 524 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL-GASRIHRNPELGRSAAEKIFE-L 581

Query: 280 EPTRVSVTSILS 291
           EP    +  +LS
Sbjct: 582 EPENAGMYVLLS 593



 Score = 46.6 bits (109), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           +  + + G +  A+R+F   P +    YNAM++GY+ +G    A +LF+ + +    PD+
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR----PDN 100

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
            ++  +L    HA  V+  L    G+F +  V+ S+  +  +++  +  G +  A R   
Sbjct: 101 YSYNTLL----HALAVSSSLADARGLFDEMPVRDSVT-YNVMISSHANHGLVSLA-RHYF 154

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
            +  + DA     +L+  V++   E A  +     + +     ++ AL + Y   G+ +E
Sbjct: 155 DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVI---SWNALMSGYVQWGKMSE 211

Query: 725 VSQVRDIM 732
             ++ D M
Sbjct: 212 ARELFDRM 219


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  342 bits (877), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 223/733 (30%), Positives = 359/733 (48%), Gaps = 107/733 (14%)

Query: 153 IIGLNCRVGLSEKALIGFVEMQEDGVSP--DNFVLPNVLKACGALGWVGFGRAVHGYVLK 210
           IIG  C   +   AL+ +  M+    SP  D++   + LKAC     +  G+A+H +VL+
Sbjct: 75  IIGFICN-NMPIDALLFYARMRASP-SPKFDSYTFSSTLKACAQARSLKLGKALHCHVLR 132

Query: 211 VGFDGCVFVASSLIDMYGKC-------------GDLEEARKVFDGMIARNVVAWNSMIVG 257
             F     V +SL++MY  C              + +  R+VFD M  RNVVAWN+MI  
Sbjct: 133 SHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISW 192

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL- 316
           YV+     EA ++F  M   G+ PT VS  ++  A   ++  D     + + V  G +  
Sbjct: 193 YVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYV 252

Query: 317 -DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY-------------VQS 362
            D  + SS I  Y+++G ++ A  +F   +ER+   WN +I  Y             VQ 
Sbjct: 253 DDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQV 312

Query: 363 GQSD----------------------------------------VVVASSIVDMYAKCER 382
            +S+                                        VV+ ++I+ MY++C  
Sbjct: 313 MESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGS 372

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-- 440
           I  + +VF++++ RDVV WNT+++A+   G   E   L ++MQ +G   + ++  +++  
Sbjct: 373 IGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSL 432

Query: 441 LGFLRNGQMNEAKDMFL---QMQSLGVQPNLI---------------------------T 470
              LR+ ++ +    +L    +Q  G+   LI                           T
Sbjct: 433 ASNLRSQEIGKQAHAYLIRHGIQFEGMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEAT 492

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W  +I+G TQN    E    F++M+E  ++P+  T+   L AC  + ++  G+ IHG+ I
Sbjct: 493 WNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAI 552

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           R  L     + T+L+DMY+K G I  A+ VF  +  K    Y  MI  Y  HG+   AL+
Sbjct: 553 RCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALS 612

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF  +   GI PDS+TF  IL+ACS+AGLV+EGL +F  M  +++++PS EH+ CV ++L
Sbjct: 613 LFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADML 672

Query: 651 SRCGNLDEALRVILTMPCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDN--PG 707
            R G + EA   +  +  + +   I GSLL  C    E EL + ++  LL++E  +   G
Sbjct: 673 GRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTG 732

Query: 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEE 767
            +V LSN YAA G W+ V +VR  M++KGL K  GCSW+++   ++ F++ D  HP+  E
Sbjct: 733 YHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAE 792

Query: 768 IYATLALLGMHVR 780
           IY  L  L M ++
Sbjct: 793 IYQMLEKLAMEMK 805



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 148/586 (25%), Positives = 266/586 (45%), Gaps = 49/586 (8%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS   K +++ EA  +   M     +  P  +  +        D      ++  ++K G 
Sbjct: 190 ISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGS 249

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            +  + +V +  +  YA+   +D A  +F     +N   W  +IG   +     +A+  F
Sbjct: 250 DYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLF 309

Query: 171 VE-MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           V+ M+ +    D+    + L A   L W+  GR +H Y+LK      V + +++I MY +
Sbjct: 310 VQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSR 369

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG +  + KVF  M+ R+VV WN+M+  +VQNGL++E + + +EM  +G     V++T++
Sbjct: 370 CGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTAL 429

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR--MVER 347
           LS ++NL + + GKQAHA  + +G++ + + G  +I+ Y+K GL+  A+ +F +    +R
Sbjct: 430 LSLASNLRSQEIGKQAHAYLIRHGIQFEGMDG-YLIDMYAKSGLITTAQQLFEKNSXYDR 488

Query: 348 DIVTWNLLIASYVQSGQSD-----------------VVVASSIVDMYAKCERIDNAKQVF 390
           D  TWN +IA Y Q+G S+                  V  +SI+        I   KQ+ 
Sbjct: 489 DEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIH 548

Query: 391 NSIIL----RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
              I     ++V +   LL  Y+  G    A  +F     E +  N +++ ++IL + ++
Sbjct: 549 GFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVF----AETLEKNSVTYTTMILSYGQH 604

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTT 505
           G    A  +F  M   G++P+ +T+  ++S  +     +E +  FQ M  E  I+PS+  
Sbjct: 605 GMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEH 664

Query: 506 ITCALSACTDVASL--RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ------- 556
             C       VA +  R GR    Y     L            +   C  IH        
Sbjct: 665 YCC-------VADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGAC-RIHGEFELGKV 716

Query: 557 -AKRVFDISPSKELPVYNAMISG-YAMHGLAVEALALFKNLQQKGI 600
            A ++ ++     L  Y+ ++S  YA  G       + K ++QKG+
Sbjct: 717 VANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGL 762



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 122/503 (24%), Positives = 218/503 (43%), Gaps = 113/503 (22%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT--S 288
           G   +A  +FD +     V WN++I+G++ N +  +A+ +FY        P   S T  S
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDAL-LFYARMRASPSPKFDSYTFSS 109

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK-------VGLLED----- 336
            L A A   +L  GK  H   + +      ++ +S++N YS        +G   D     
Sbjct: 110 TLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCD 169

Query: 337 -AEVVFSRMVERDIVTWNLLIASYVQSGQ------------------------------- 364
               VF  M +R++V WN +I+ YV++ +                               
Sbjct: 170 LVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVW 229

Query: 365 -------------------SDVV----VASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
                              SD V    V SS + MYA+   +D A+++F+  + R+  +W
Sbjct: 230 RMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVW 289

Query: 402 NTLLAAYADLGRSGEASRLFYQMQ---------------LEGISP--------------- 431
           NT++  Y       EA  LF Q+                L  IS                
Sbjct: 290 NTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYIL 349

Query: 432 ------NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
                  ++  N++I+ + R G +  +  +F  M    ++ +++TW T++S   QN   +
Sbjct: 350 KSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM----LERDVVTWNTMVSAFVQNGLDD 405

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
           E ++   EM + G    + T+T  LS  +++ S   G+  H YLIRH +     +   L+
Sbjct: 406 EGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDGYLI 464

Query: 546 DMYAKCGNIHQAKRVFDISP--SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           DMYAK G I  A+++F+ +    ++   +NAMI+GY  +GL+ E  A+F+ + ++ + P+
Sbjct: 465 DMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPN 524

Query: 604 SITFTNILNACSHAGLVNEGLEL 626
           ++T  +IL AC+  G +  G ++
Sbjct: 525 AVTLASILPACNPMGTIGLGKQI 547



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 18/183 (9%)

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPST 503
           R G  ++A  +F  +     +P  + W T+I G   N+   +A+LF+  M  +   K  +
Sbjct: 49  RQGHPHQALHLFDSIP----RPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDS 104

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC------------ 551
            T +  L AC    SL+ G+A+H +++R        +  SL++MY+ C            
Sbjct: 105 YTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYD 164

Query: 552 -GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
             N    +RVFD    + +  +N MIS Y      +EA  +F+ + + GI P  ++F N+
Sbjct: 165 FNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNV 224

Query: 611 LNA 613
             A
Sbjct: 225 FPA 227



 Score = 42.4 bits (98), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP--DSITFTN 609
           G+ HQA  +FD  P     ++N +I G+  + + ++AL LF    +    P  DS TF++
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDAL-LFYARMRASPSPKFDSYTFSS 109

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            L AC+ A  +  G  L   +   H    S   +  ++N+ S C
Sbjct: 110 TLKACAQARSLKLGKALHCHVLRSH-FGSSRIVYNSLLNMYSTC 152


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  342 bits (877), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 190/577 (32%), Positives = 311/577 (53%), Gaps = 29/577 (5%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           +F  + ++  Y +   L +AR++FD M  ++VV+WNS++ GY QNG  +EA  VF  M  
Sbjct: 111 LFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP- 169

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
              E   +S   +L+A  +   ++E      +   +  + D +  + ++  + +   L D
Sbjct: 170 ---EKNSISWNGLLAAYVHNGRIEEA----CLLFESKSDWDLISWNCLMGGFVRKKKLGD 222

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKCERI 383
           A  +F +M  RD ++WN +I+ Y Q G               DV   +++V  Y +   +
Sbjct: 223 ARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGML 282

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           D AK  F+ +  ++ V +N ++A Y    +   A  LF  M       NI SWN++I G+
Sbjct: 283 DEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR----NISSWNTMITGY 338

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            + G + +A+  F  M     Q + ++W  +I+G  Q+    EA+  F E+ + G   + 
Sbjct: 339 GQIGDIAQARKFFDMMP----QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNR 394

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            T  CALS C D+A+L  G+ IHG  ++        +  +L+ MY KCG+I +A   F+ 
Sbjct: 395 ATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEG 454

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
              K++  +N M++GYA HG   +AL +F++++  G+ PD IT   +L+ACSH GL++ G
Sbjct: 455 IEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRG 514

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
            E F  M  D+ V P+ +H+ C+++LL R G L+EA  +I  MP  P A   G+LL    
Sbjct: 515 TEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASR 574

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
               TEL E  +E + ++EP N G YV LSN YAASGRW +  ++R  M++ G++K PG 
Sbjct: 575 IHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGY 634

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           SW+++  ++H F   D SHP+ E IYA L  L + +R
Sbjct: 635 SWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMR 671



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 158/320 (49%), Gaps = 14/320 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEI-YGELLQGCVYKRDMYTGQQIHARILKNG 109
           +S   +   + EA     EM  +N     E+ Y  ++ G V  + M   +++   +    
Sbjct: 273 VSGYVQNGMLDEAKTFFDEMPEKN-----EVSYNAMIAGYVQTKKMDIARELFESMP--- 324

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
               RN      ++  Y +   +  A + F  +  ++  SWAAII    + G  E+AL  
Sbjct: 325 ---CRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNM 381

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           FVE+++DG S +       L  C  +  +  G+ +HG  +K+G+    FV ++L+ MY K
Sbjct: 382 FVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFK 441

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG ++EA   F+G+  ++VV+WN+M+ GY ++G   +A+ VF  M   GV+P  +++  +
Sbjct: 442 CGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGV 501

Query: 290 LSASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VER 347
           LSA ++   LD G +  +++    G+   +   + +I+   + G LE+A+ +   M  + 
Sbjct: 502 LSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQP 561

Query: 348 DIVTWNLLIASYVQSGQSDV 367
              +W  L+ +    G +++
Sbjct: 562 GAASWGALLGASRIHGNTEL 581



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 193/473 (40%), Gaps = 132/473 (27%)

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           +++ WN  I  +++NG  + A+ VF  M      P R SV+                   
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTM------PRRSSVSY------------------ 83

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
                          +++I+ Y +      A  +F +M ERD+ +WN+++  YV++    
Sbjct: 84  ---------------NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRN---- 124

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-Q 425
                        C R+ +A+++F+ +  +DVV WN+LL+ YA  G   EA  +F  M +
Sbjct: 125 -------------C-RLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPE 170

Query: 426 LEGISPN--------------------------IISWNSVILGFLRNGQMNEAKDMFLQM 459
              IS N                          +ISWN ++ GF+R  ++ +A+ +F +M
Sbjct: 171 KNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKM 230

Query: 460 ----------------QSLGVQP-----------NLITWTTLISGLTQNSCGNEAILFFQ 492
                           Q  G+             ++ TWT ++SG  QN   +EA  FF 
Sbjct: 231 PVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFD 290

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           EM E     +  +    ++       +   R     L     C       +++  Y + G
Sbjct: 291 EMPE----KNEVSYNAMIAGYVQTKKMDIARE----LFESMPCRNISSWNTMITGYGQIG 342

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           +I QA++ FD+ P ++   + A+I+GYA  G   EAL +F  ++Q G   +  TF   L+
Sbjct: 343 DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEH-FGCVVN-----LLSRCGNLDEA 659
            C+    +  G ++       H     M +  GC V      +  +CG++DEA
Sbjct: 403 TCADIAALELGKQI-------HGQAVKMGYGTGCFVGNALLAMYFKCGSIDEA 448



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 176/431 (40%), Gaps = 86/431 (19%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++  Y +   L  A RLF  +  K+V SW +++    + G  ++A   F  M E      
Sbjct: 117 MLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISW 176

Query: 182 NFVLP------NVLKAC----GALGW--VGFGRAVHGYVLKVGFDGCVFV---------- 219
           N +L        + +AC        W  + +   + G+V K       ++          
Sbjct: 177 NGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAI 236

Query: 220 -ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
             +++I  Y + G L +AR++FD    R+V  W +M+ GYVQNG+ +EA   F EM    
Sbjct: 237 SWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP--- 293

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDA 337
            E   VS  ++++       +D  ++     +   M   N+   +++I  Y ++G +  A
Sbjct: 294 -EKNEVSYNAMIAGYVQTKKMDIARE-----LFESMPCRNISSWNTMITGYGQIGDIAQA 347

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQ------------------------------SDV 367
              F  M +RD V+W  +IA Y QSG                               +D+
Sbjct: 348 RKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADI 407

Query: 368 V----------------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                                  V ++++ MY KC  ID A   F  I  +DVV WNT+L
Sbjct: 408 AALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTML 467

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGV 464
           A YA  G   +A  +F  M+  G+ P+ I+   V+      G ++   + F  M +  GV
Sbjct: 468 AGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGV 527

Query: 465 QPNLITWTTLI 475
            P    +T +I
Sbjct: 528 IPTSKHYTCMI 538



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 171/420 (40%), Gaps = 100/420 (23%)

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL------- 395
           R+ + DI+ WN  I++++++G                    D+A  VFN++         
Sbjct: 43  RVKDPDILKWNKAISTHMRNGH------------------CDSALHVFNTMPRRSSVSYN 84

Query: 396 ------------------------RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
                                   RD+  WN +L  Y    R G+A RLF  M       
Sbjct: 85  AMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMP----EK 140

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           +++SWNS++ G+ +NG ++EA+++F  M     + N I+W  L++    N    EA L F
Sbjct: 141 DVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEACLLF 196

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL-IRHDLCLPTPIVTSLVDMYAK 550
           +   +  +     +  C +        L + R +   + +R  +   T     ++  YA+
Sbjct: 197 ESKSDWDL----ISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNT-----MISGYAQ 247

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
            G + QA+R+FD SP++++  + AM+SGY  +G+  EA   F  + +K    + +++  +
Sbjct: 248 GGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAM 303

Query: 611 LNACSHAGLVNEGLELFVGM--------------------------FSDHQVKPSMEHFG 644
           +        ++   ELF  M                          F D   +     + 
Sbjct: 304 IAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWA 363

Query: 645 CVVNLLSRCGNLDEALRVILTMPCDPDA---HIIGSLLSTCVKSNETELAEYISEHLLQL 701
            ++   ++ G+ +EAL + + +  D ++      G  LSTC      EL + I    +++
Sbjct: 364 AIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKM 423



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 38/140 (27%)

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           + GL++ G E F  M  ++ V P+ +H+ C+++LL R   L+E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
           G+LL        TEL E  ++   ++ P N G                 +S++RD+    
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISKMRDV---- 857

Query: 736 GLRKNPGCSWIQIGEELHVF 755
           G++K PG SW ++  ++H F
Sbjct: 858 GVQKVPGYSWFEVQNKIHTF 877


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  342 bits (877), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 210/672 (31%), Positives = 342/672 (50%), Gaps = 100/672 (14%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H  +L  G    + +++ LI++Y   GD+  +R  FD +  +N+ +WNS+I  YV+ 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 262 GLNEEA---IRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           G   EA   +   + M   G + P   +   IL A     +L +GK+ H      G E D
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDD 155

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ------------- 364
             + +S+++ YS+ G+L+ A  VF  M  +D+ +WN +I+ + Q+G              
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG 215

Query: 365 ---------------------------------------SDVVVASSIVDMYAKCERIDN 385
                                                  SDV V++++++MY+K  R+ +
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQD 275

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV------ 439
           A+ VF+ + +RD+V WN+++AAY        A R F  MQL GI P++++  S+      
Sbjct: 276 AQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQ 335

Query: 440 ---------ILGFL---------------------RNGQMNEAKDMFLQMQSLGVQPNLI 469
                    ILGF+                     + G MN A  +F Q+     + + I
Sbjct: 336 LSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP----RKDTI 391

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLE-TGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           +W TL++G TQN   +EAI  +  M E     P+  T    + A + V +L+ G  IH  
Sbjct: 392 SWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAK 451

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           LI++ L L   + T L+D+Y KCG +  A  +F   P      +NA+I+   +HG   EA
Sbjct: 452 LIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEA 511

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L LFK++  + +  D ITF ++L+ACSH+GLV+EG + F  M  ++ +KPS++H+GC+V+
Sbjct: 512 LQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVD 571

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL R G L++A  ++  MP  PDA I G+LLS C      EL    S+ LL+++ +N G 
Sbjct: 572 LLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGY 631

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YV LSN YA + +W  V +VR + +++GLRK PG S + +G +  VF   +++HPK  EI
Sbjct: 632 YVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEI 691

Query: 769 YATLALLGMHVR 780
           Y  L +L   ++
Sbjct: 692 YKELKVLSAKMK 703



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 205/435 (47%), Gaps = 22/435 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS   +      A+ +L  MK    ++       +L  C    D+  G  IH  +
Sbjct: 189 SWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHV 248

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LK+G     + +V   L+  Y+K   L  A  +F ++ V+++ SW +II    +      
Sbjct: 249 LKHG--LDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPST 306

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASSLI 224
           AL  F  MQ  G+ PD   + ++      L      R++ G+V++  + D  V + ++L+
Sbjct: 307 ALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALV 366

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTR 283
           +MY K G +  A  VFD +  ++ ++WN+++ GY QNGL  EAI  +  M       P +
Sbjct: 367 NMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQ 426

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            +  SI+ A +++ AL +G + HA  + N + LD  + + +I+ Y K G LEDA  +F  
Sbjct: 427 GTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYE 486

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           +     V WN +IAS    G+ +              E +   K +    +  D + + +
Sbjct: 487 IPRDTSVPWNAIIASLGIHGRGE--------------EALQLFKDMLAERVKADHITFVS 532

Query: 404 LLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
           LL+A +  G   E  + F  MQ E GI P++  +  ++    R G + +A ++   ++++
Sbjct: 533 LLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYEL---VRNM 589

Query: 463 GVQPNLITWTTLISG 477
            +QP+   W  L+S 
Sbjct: 590 PIQPDASIWGALLSA 604


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 192/633 (30%), Positives = 329/633 (51%), Gaps = 63/633 (9%)

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC----VFVASSLIDMYGKCGDLEE 235
           P  ++L ++L A G  G     R V        FD      +F  ++L+        L +
Sbjct: 39  PPTYLLNHLLTAYGKAGRHARARRV--------FDAMPHPNLFTYNALLSTLAHARLLSD 90

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL--EGVEPTRVSVTSILSAS 293
              +F  M  R++V++N++I G+   G + +A+RV+  +      V P+R+++++++ A+
Sbjct: 91  MEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAA 150

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           + L     GKQ H   +  G   +  +GS +++ Y+K+ L+ DA+  F  +  +++V +N
Sbjct: 151 SALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYN 210

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
            +I   +                  +C+ ++ A+++F  +  RD + W T++  +   G 
Sbjct: 211 TMITGLL------------------RCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGL 252

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK--------------- 453
             EA  +F +M+ +GI+ +  ++ S++     L  L  G+   A                
Sbjct: 253 ESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSA 312

Query: 454 --DMFLQMQSLGVQ---------PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
             DM+ + +S+ +           N+I+WT LI G  QN C  EA+  F EM   GI P 
Sbjct: 313 LVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
             T+   +S+C ++ASL  G   H   +   L     +  +LV +Y KCG+I  A R+FD
Sbjct: 373 DYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
                +   + A++SGYA  G A E + LF+ +  KG+ PD +TF  +L+ACS AG V +
Sbjct: 433 EMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEK 492

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G   F  M  DH + P  +H+ C+++L SR G L EA   I  MP  PDA   G+LLS C
Sbjct: 493 GRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSAC 552

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
               + E+ ++ +E+LL+++P NP +YV L + +AA G+WNEV+Q+R  M+++ ++K PG
Sbjct: 553 RLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPG 612

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           CSWI+   ++H+F A D+SHP ++ IY  L  L
Sbjct: 613 CSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWL 645



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/466 (29%), Positives = 234/466 (50%), Gaps = 56/466 (12%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK------------------------- 128
           D   G+Q H +IL+ G  F  N +V + LV  YAK                         
Sbjct: 155 DRALGKQFHCQILRLG--FGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTM 212

Query: 129 ------CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
                 C  ++ A RLF  +  ++  +W  ++    + GL  +AL  F  M+  G++ D 
Sbjct: 213 ITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQ 272

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
           +   ++L ACGAL  +  G+ +H Y+++  +D  VFV S+L+DMY KC  ++ A  VF  
Sbjct: 273 YTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRR 332

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  +N+++W ++IVGY QNG +EEA+RVF EM  +G++P   ++ S++S+ ANL +L+EG
Sbjct: 333 MTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEG 392

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
            Q H +A+++G+     + ++++  Y K G +EDA  +F  M   D V+W  L++ Y Q 
Sbjct: 393 AQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQF 452

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G++               E ID  +++    +  D V +  +L+A +  G   +    F+
Sbjct: 453 GRAK--------------ETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFH 498

Query: 423 QMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
            MQ + GI P    +  +I  + R+G++ EA++   QM    + P+ I W TL+S     
Sbjct: 499 SMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMP---MHPDAIGWGTLLSACRLR 555

Query: 482 SCGNEAILFFQEMLETGIK-PSTTTITCALSAC----TDVASLRNG 522
                     + +LE   + P++  + C++ A      +VA LR G
Sbjct: 556 GDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRG 601



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 140/540 (25%), Positives = 233/540 (43%), Gaps = 93/540 (17%)

Query: 102 HARILKNGDFFAR-NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII-GLNCR 159
           HAR  +  D     N +    L+   A    L     LF  +  +++ S+ A+I G +  
Sbjct: 57  HARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGG 116

Query: 160 VGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
              ++   +    +Q D  V P    +  ++ A  ALG    G+  H  +L++GF    F
Sbjct: 117 GSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAF 176

Query: 219 VASSLIDMYGK-------------------------------CGDLEEARKVFDGMIARN 247
           V S L+DMY K                               C  +EEAR++F+ M  R+
Sbjct: 177 VGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRD 236

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
            + W +M+ G+ QNGL  EA+ +F  M  +G+   + +  SIL+A   L AL++GKQ HA
Sbjct: 237 SITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHA 296

Query: 308 VAVINGMELDNV-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
             +I     DNV +GS++++ YSK   ++ AE VF RM  ++I++W  LI  Y Q+G S+
Sbjct: 297 Y-IIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSE 355

Query: 367 ----------------------------------------------------VVVASSIV 374
                                                               + V++++V
Sbjct: 356 EAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALV 415

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
            +Y KC  I++A ++F+ +   D V W  L++ YA  GR+ E   LF +M  +G+ P+ +
Sbjct: 416 TLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGV 475

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
           ++  V+    R G + + +  F  MQ   G+ P    +T +I   +++    EA  F ++
Sbjct: 476 TFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQ 535

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M    + P        LSAC     +  G+     L+  D   P   V  L  M+A  G 
Sbjct: 536 M---PMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVL-LCSMHAAKGQ 591



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 171/308 (55%), Gaps = 4/308 (1%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA+++   M+ +   I    +G +L  C     +  G+QIHA I++    +  N +V + 
Sbjct: 255 EALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTR--YDDNVFVGSA 312

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           LV  Y+KC ++ +A  +F R+  KN+ SW A+I    + G SE+A+  F EMQ DG+ PD
Sbjct: 313 LVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
           ++ L +V+ +C  L  +  G   H   L  G    + V+++L+ +YGKCG +E+A ++FD
Sbjct: 373 DYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M   + V+W +++ GY Q G  +E I +F +M  +GV+P  V+   +LSA +    +++
Sbjct: 433 EMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEK 492

Query: 302 GKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASY 359
           G+   H++   +G+   +   + +I+ YS+ G L++AE    +M +  D + W  L+++ 
Sbjct: 493 GRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSAC 552

Query: 360 VQSGQSDV 367
              G  ++
Sbjct: 553 RLRGDMEI 560


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 198/668 (29%), Positives = 347/668 (51%), Gaps = 73/668 (10%)

Query: 180  PDNFVLP---NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
            P+N VL    ++L+ C         + +H  ++  G     F+A+ ++ +Y   G + +A
Sbjct: 867  PNNDVLDFFNDLLQQCSK---SHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDA 923

Query: 237  RKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
            ++VF+        N++ WNS++   V +G  EEA+ ++  M   GV     +   ++ A 
Sbjct: 924  QRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRAC 983

Query: 294  ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
            A + +    +  H   V  G + +  +G+ ++  Y K+G ++DA  VF RM  R  V+WN
Sbjct: 984  ALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWN 1043

Query: 354  LLIASYV----------------QSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
             +++ Y                  +G + ++V  +S++  +A+C +     ++F  + +R
Sbjct: 1044 TMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMR 1103

Query: 397  DV---------------------------------------VLWNTLLAAYADLGRSGEA 417
             +                                        + N+L+  Y   G    A
Sbjct: 1104 GIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAA 1163

Query: 418  SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG----VQPNLITWTT 473
              LF +++    + NI+SWN++I  +   G  +EA  +FLQ++       V+PN+++W+ 
Sbjct: 1164 RILFLEIK----TKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSA 1219

Query: 474  LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
            +I G      G EA+  F+ M    +K ++ TI   LS C ++A+L  GR IHG+++R  
Sbjct: 1220 VIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSL 1279

Query: 534  LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
            +     +   L++MY K G+  +   VF+   +K+L  +N M++GY +HGL   A+  F 
Sbjct: 1280 MDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFD 1339

Query: 594  NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
             + + G +PD +TF  +L+ACSHAGLV EG ELF  M  + +V+P MEH+ C+V+LL R 
Sbjct: 1340 QMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRA 1399

Query: 654  GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
            G L EA +V+ +MP +P+A + G+LL++C     TE+AE  +  +  L  +  G+Y+ LS
Sbjct: 1400 GLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLS 1459

Query: 714  NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
            N YAASGRW + ++VR   K KGL+K PG SWIQ+ +++++F A +  H + EE+Y  L 
Sbjct: 1460 NIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILK 1519

Query: 774  LLGMHVRL 781
             LG+ + +
Sbjct: 1520 DLGLQMEV 1527



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 154/578 (26%), Positives = 266/578 (46%), Gaps = 94/578 (16%)

Query: 80   EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
            + + +LLQ C      +  QQIH++I+  G    R+ ++  ++V  YA    +  A R+F
Sbjct: 873  DFFNDLLQQC---SKSHLSQQIHSQIIVTGSH--RSAFLAARVVSVYAGFGLVSDAQRVF 927

Query: 140  CRLRVK---NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
                ++   N+  W +I+  N   G  E+AL  +  M++ GVS D F  P V++AC  +G
Sbjct: 928  EVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMG 987

Query: 197  WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
                 R+VHG+V+++GF   + V + L+ MYGK G +++ARKVF+ M  R+ V+WN+M+ 
Sbjct: 988  SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVS 1047

Query: 257  GYVQN-----------------------------------GLNEEAIRVFYEMTLEGVEP 281
            GY  N                                   G + E + +F  M + G+  
Sbjct: 1048 GYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGA 1107

Query: 282  TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
            T  ++  +LS S +L A DEGK  H   V  G E    + +S+I  Y K G +  A ++F
Sbjct: 1108 TAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILF 1167

Query: 342  SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
              +  ++IV+WN LI+SY   G  D   A     ++ + E+ D        ++  +VV W
Sbjct: 1168 LEIKTKNIVSWNALISSYADLGWCDEAFA-----IFLQLEKTDEY-----PMVRPNVVSW 1217

Query: 402  NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LG--------- 442
            + ++  +A  G+  EA  LF +MQL  +  N ++  SV+          LG         
Sbjct: 1218 SAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVR 1277

Query: 443  ----------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                            + ++G   E   +F ++++     +LI+W T+++G   +  G  
Sbjct: 1278 SLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIEN----KDLISWNTMVAGYGIHGLGEN 1333

Query: 487  AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT-PIVTSLV 545
            AI  F +M++ G +P   T    LSAC+    +  GR +   +I+     P       +V
Sbjct: 1334 AIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMV 1393

Query: 546  DMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMH 582
            D+  + G + +A +V    P      V+ A+++   MH
Sbjct: 1394 DLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMH 1431



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 212/475 (44%), Gaps = 78/475 (16%)

Query: 51   ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
            +SS ++  Q  E ++L   M+ R      E    +L   V       G+ IH  ++K G 
Sbjct: 1081 LSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGG- 1139

Query: 111  FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN------------------------ 146
             F    +V+  L+  Y K   ++ A  LF  ++ KN                        
Sbjct: 1140 -FENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIF 1198

Query: 147  ---------------VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
                           V SW+A+IG     G  E+AL  F  MQ   V  ++  + +VL  
Sbjct: 1199 LQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSV 1258

Query: 192  CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
            C  L  +  GR +HG+V++   DG + V + LI+MY K G  +E   VF+ +  +++++W
Sbjct: 1259 CAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISW 1318

Query: 252  NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
            N+M+ GY  +GL E AIR F +M  +G EP  V+  ++LSA ++   + EG++     +I
Sbjct: 1319 NTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFD-KMI 1377

Query: 312  NGMELDNVLG--SSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDVV 368
                ++  +   + +++   + GLL++A +VV S  VE +   W  L+ S      ++V 
Sbjct: 1378 KEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVA 1437

Query: 369  VASSIVDMYAKCERIDNAKQVF--NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                           + A Q+F  NS I    +L + +   YA  GR  +++++    + 
Sbjct: 1438 E--------------ETASQIFNLNSEIAGSYMLLSNI---YAASGRWEDSAKVRISAKT 1480

Query: 427  EGI--SPNIISWNSV-------ILGFLRNGQMNEA----KDMFLQMQSLGVQPNL 468
            +G+  +P   SW  V         G  ++ ++ E     KD+ LQM+  G  P++
Sbjct: 1481 KGLKKTPG-QSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYIPDI 1534


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  342 bits (876), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 190/577 (32%), Positives = 311/577 (53%), Gaps = 29/577 (5%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           +F  + ++  Y +   L +AR++FD M  ++VV+WNS++ GY QNG  +EA  VF  M  
Sbjct: 111 LFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP- 169

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
              E   +S   +L+A  +   ++E      +   +  + D +  + ++  + +   L D
Sbjct: 170 ---EKNSISWNGLLAAYVHNGRIEEA----CLLFESKSDWDLISWNCLMGGFVRKKKLGD 222

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKCERI 383
           A  +F +M  RD ++WN +I+ Y Q G               DV   +++V  Y +   +
Sbjct: 223 ARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGML 282

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           D AK  F+ +  ++ V +N ++A Y    +   A  LF  M       NI SWN++I G+
Sbjct: 283 DEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR----NISSWNTMITGY 338

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            + G + +A+  F  M     Q + ++W  +I+G  Q+    EA+  F E+ + G   + 
Sbjct: 339 GQIGDIAQARKFFDMMP----QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNR 394

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            T  CALS C D+A+L  G+ IHG  ++        +  +L+ MY KCG+I +A   F+ 
Sbjct: 395 ATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEG 454

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
              K++  +N M++GYA HG   +AL +F++++  G+ PD IT   +L+ACSH GL++ G
Sbjct: 455 IEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRG 514

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
            E F  M  D+ V P+ +H+ C+++LL R G L+EA  +I  MP  P A   G+LL    
Sbjct: 515 TEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASR 574

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
               TEL E  +E + ++EP N G YV LSN YAASGRW +  ++R  M++ G++K PG 
Sbjct: 575 IHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGY 634

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           SW+++  ++H F   D SHP+ E IYA L  L + +R
Sbjct: 635 SWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMR 671



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 158/320 (49%), Gaps = 14/320 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEI-YGELLQGCVYKRDMYTGQQIHARILKNG 109
           +S   +   + EA     EM  +N     E+ Y  ++ G V  + M   +++   +    
Sbjct: 273 VSGYVQNGMLDEAKTFFDEMPEKN-----EVSYNAMIAGYVQTKKMDIARELFESMP--- 324

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
               RN      ++  Y +   +  A + F  +  ++  SWAAII    + G  E+AL  
Sbjct: 325 ---CRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNM 381

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           FVE+++DG S +       L  C  +  +  G+ +HG  +K+G+    FV ++L+ MY K
Sbjct: 382 FVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFK 441

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG ++EA   F+G+  ++VV+WN+M+ GY ++G   +A+ VF  M   GV+P  +++  +
Sbjct: 442 CGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGV 501

Query: 290 LSASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VER 347
           LSA ++   LD G +  +++    G+   +   + +I+   + G LE+A+ +   M  + 
Sbjct: 502 LSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQP 561

Query: 348 DIVTWNLLIASYVQSGQSDV 367
              +W  L+ +    G +++
Sbjct: 562 GAASWGALLGASRIHGNTEL 581



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 193/473 (40%), Gaps = 132/473 (27%)

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           +++ WN  I  +++NG  + A+ VF  M      P R SV+                   
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTM------PRRSSVSY------------------ 83

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
                          +++I+ Y +      A  +F +M ERD+ +WN+++  YV++    
Sbjct: 84  ---------------NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRN---- 124

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-Q 425
                        C R+ +A+++F+ +  +DVV WN+LL+ YA  G   EA  +F  M +
Sbjct: 125 -------------C-RLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPE 170

Query: 426 LEGISPN--------------------------IISWNSVILGFLRNGQMNEAKDMFLQM 459
              IS N                          +ISWN ++ GF+R  ++ +A+ +F +M
Sbjct: 171 KNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKM 230

Query: 460 ----------------QSLGVQP-----------NLITWTTLISGLTQNSCGNEAILFFQ 492
                           Q  G+             ++ TWT ++SG  QN   +EA  FF 
Sbjct: 231 PVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFD 290

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           EM E     +  +    ++       +   R     L     C       +++  Y + G
Sbjct: 291 EMPE----KNEVSYNAMIAGYVQTKKMDIARE----LFESMPCRNISSWNTMITGYGQIG 342

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           +I QA++ FD+ P ++   + A+I+GYA  G   EAL +F  ++Q G   +  TF   L+
Sbjct: 343 DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEH-FGCVVN-----LLSRCGNLDEA 659
            C+    +  G ++       H     M +  GC V      +  +CG++DEA
Sbjct: 403 TCADIAALELGKQI-------HGQAVKMGYGTGCFVGNALLAMYFKCGSIDEA 448



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 176/431 (40%), Gaps = 86/431 (19%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++  Y +   L  A RLF  +  K+V SW +++    + G  ++A   F  M E      
Sbjct: 117 MLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISW 176

Query: 182 NFVLP------NVLKAC----GALGW--VGFGRAVHGYVLKVGFDGCVFV---------- 219
           N +L        + +AC        W  + +   + G+V K       ++          
Sbjct: 177 NGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAI 236

Query: 220 -ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
             +++I  Y + G L +AR++FD    R+V  W +M+ GYVQNG+ +EA   F EM    
Sbjct: 237 SWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP--- 293

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDA 337
            E   VS  ++++       +D  ++     +   M   N+   +++I  Y ++G +  A
Sbjct: 294 -EKNEVSYNAMIAGYVQTKKMDIARE-----LFESMPCRNISSWNTMITGYGQIGDIAQA 347

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQ------------------------------SDV 367
              F  M +RD V+W  +IA Y QSG                               +D+
Sbjct: 348 RKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADI 407

Query: 368 V----------------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                                  V ++++ MY KC  ID A   F  I  +DVV WNT+L
Sbjct: 408 AALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTML 467

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGV 464
           A YA  G   +A  +F  M+  G+ P+ I+   V+      G ++   + F  M +  GV
Sbjct: 468 AGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGV 527

Query: 465 QPNLITWTTLI 475
            P    +T +I
Sbjct: 528 IPTSKHYTCMI 538



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 171/420 (40%), Gaps = 100/420 (23%)

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL------- 395
           R+ + DI+ WN  I++++++G                    D+A  VFN++         
Sbjct: 43  RVKDPDILKWNKAISTHMRNGH------------------CDSALHVFNTMPRRSSVSYN 84

Query: 396 ------------------------RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
                                   RD+  WN +L  Y    R G+A RLF  M       
Sbjct: 85  AMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMP----EK 140

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           +++SWNS++ G+ +NG ++EA+++F  M     + N I+W  L++    N    EA L F
Sbjct: 141 DVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEACLLF 196

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL-IRHDLCLPTPIVTSLVDMYAK 550
           +   +  +     +  C +        L + R +   + +R  +   T     ++  YA+
Sbjct: 197 ESKSDWDL----ISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNT-----MISGYAQ 247

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
            G + QA+R+FD SP++++  + AM+SGY  +G+  EA   F  + +K    + +++  +
Sbjct: 248 GGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAM 303

Query: 611 LNACSHAGLVNEGLELFVGM--------------------------FSDHQVKPSMEHFG 644
           +        ++   ELF  M                          F D   +     + 
Sbjct: 304 IAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWA 363

Query: 645 CVVNLLSRCGNLDEALRVILTMPCDPDA---HIIGSLLSTCVKSNETELAEYISEHLLQL 701
            ++   ++ G+ +EAL + + +  D ++      G  LSTC      EL + I    +++
Sbjct: 364 AIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKM 423


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  342 bits (876), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 200/610 (32%), Positives = 329/610 (53%), Gaps = 62/610 (10%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           F  ++++  Y K GD++   + FD +  R+ V+W +MIVGY   G   +AIRV  +M  E
Sbjct: 81  FSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKE 140

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G+EPT+ ++T++L++ A    ++ GK+ H+  V  G+  +  + +S++N Y+K G    A
Sbjct: 141 GIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA 200

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA--------------------------- 370
           + VF RMV RDI +WN +IA ++Q GQ D+ +A                           
Sbjct: 201 KFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDL 260

Query: 371 ----------------------SSIVDMYAKCERIDNAKQVFNSII-----LRDVVLWNT 403
                                 +S++   A  E++   KQ+ + I+     +  +VL N 
Sbjct: 261 RALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVL-NA 319

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           L++ Y+  G    A RL  Q   + +   I  + +++ G+++ G MN+AK++F+ ++   
Sbjct: 320 LISMYSRCGGVETARRLIEQRGTKDL--KIEGFTALLDGYIKLGDMNQAKNIFVSLK--- 374

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
              +++ WT +I G  Q+    EAI  F+ M+  G +P++ T+   LS  + +ASL +G+
Sbjct: 375 -DRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGK 433

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMH 582
            IHG  ++        +  +L+ MYAK GNI  A R FD I   ++   + +MI   A H
Sbjct: 434 QIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQH 493

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G A EAL LF+ +  +G+ PD IT+  + +AC+HAGLVN+G + F  M    ++ P++ H
Sbjct: 494 GHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSH 553

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           + C+V+L  R G L EA   I  MP +PD    GSLLS C      +L +  +E LL LE
Sbjct: 554 YACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLE 613

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           P+N G Y AL+N Y+A G+W E +++R  MK+  ++K  G SWI++  ++HVF   D +H
Sbjct: 614 PENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTH 673

Query: 763 PKTEEIYATL 772
           P+  EIY T+
Sbjct: 674 PEKNEIYMTM 683



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 170/693 (24%), Positives = 294/693 (42%), Gaps = 169/693 (24%)

Query: 80  EIYGELLQGCVYKRD-MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRL 138
           E+   LLQ  V K +  +T Q +H R++K+G  F+   Y+   L+  Y+K      A +L
Sbjct: 14  ELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFS--VYLMNNLMNVYSKTGYALHARKL 71

Query: 139 FCRLRVKNVFSWAAIIGLNCR-------------------------------VGLSEKAL 167
           F  + ++  FSW  ++    +                               +G   KA+
Sbjct: 72  FDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAI 131

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
               +M ++G+ P  F L NVL +  A   +  G+ VH +++K+G  G V V++SL++MY
Sbjct: 132 RVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMY 191

Query: 228 GKCGDLEEARKVFDGMIA-------------------------------RNVVAWNSMIV 256
            KCGD   A+ VFD M+                                R++V WNSMI 
Sbjct: 192 AKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMIS 251

Query: 257 GYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
           G+ Q G +  A+ +F +M  +  + P R ++ S+LSA ANL+ L  GKQ H+  V  G +
Sbjct: 252 GFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFD 311

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA--SSI 373
           +  ++ +++I+ YS+ G +E A     R++E              Q G  D+ +   +++
Sbjct: 312 ISGIVLNALISMYSRCGGVETAR----RLIE--------------QRGTKDLKIEGFTAL 353

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           +D Y K   ++ AK +F S+  RDVV W  ++  Y   G  GEA  LF  M   G  PN 
Sbjct: 354 LDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNS 413

Query: 434 ISW-----------------------------------NSVILGFLRNGQMNEAKDMFLQ 458
            +                                    N++I  + + G +  A   F  
Sbjct: 414 YTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAF-- 471

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
              +  + + ++WT++I  L Q+    EA+  F+ ML  G++P   T     SACT    
Sbjct: 472 -DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGL 530

Query: 519 LRNGRAIHGYLIRHDLCLPT-PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           +  GR     +   D  +PT      +VD++ + G + +A+   +  P            
Sbjct: 531 VNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMP------------ 578

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ-- 635
                                 I+PD +T+ ++L+AC     V++ ++L  G  +  +  
Sbjct: 579 ----------------------IEPDVVTWGSLLSACR----VHKNIDL--GKVAAERLL 610

Query: 636 -VKPSME-HFGCVVNLLSRCGNLDEALRVILTM 666
            ++P     +  + NL S CG  +EA ++  +M
Sbjct: 611 LLEPENSGAYSALANLYSACGKWEEAAKIRKSM 643



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 171/354 (48%), Gaps = 22/354 (6%)

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
           +V  S ++  V L N L+  Y+  G +  A +LF +M L        SWN+V+  + + G
Sbjct: 39  RVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLR----TAFSWNTVLSAYSKRG 94

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
            M+   + F Q+     Q + ++WTT+I G       ++AI    +M++ GI+P+  T+T
Sbjct: 95  DMDSTCEFFDQLP----QRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLT 150

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
             L++      +  G+ +H ++++  L     +  SL++MYAKCG+   AK VFD    +
Sbjct: 151 NVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVR 210

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           ++  +NAMI+ +   G    A+A F+ + ++    D +T+ ++++  +  G     L++F
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAER----DIVTWNSMISGFNQRGYDLRALDIF 266

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLD------EALRVILTMPCDPDAHIIGSLLST 681
             M  D  + P  + F  + ++LS C NL+      +    I+T   D    ++ +L+S 
Sbjct: 267 SKMLRDSLLSP--DRF-TLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISM 323

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
             +    E A  + E     +    G + AL + Y   G  N+   +   +K++
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEG-FTALLDGYIKLGDMNQAKNIFVSLKDR 376



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 102/223 (45%), Gaps = 16/223 (7%)

Query: 501 PSTTTITCALSACTDV----ASLRNGR----AIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           P   +++  L  CT++     +  NGR     +H  +I+  L     ++ +L+++Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
               A+++FD  P +    +N ++S Y+  G        F  L Q+    DS+++T ++ 
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQR----DSVSWTTMIV 119

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV---ILTMPCD 669
              + G  ++ + +   M  +  ++P+      V+  ++    ++   +V   I+ +   
Sbjct: 120 GYKNIGQYHKAIRVMGDMVKE-GIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLR 178

Query: 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            +  +  SLL+   K  +  +A+++ + ++  +  +    +AL
Sbjct: 179 GNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIAL 221


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  342 bits (876), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 193/574 (33%), Positives = 310/574 (54%), Gaps = 29/574 (5%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H  +LK      +FV   LI  +  C  +  A   F+ +   NV  +N+MI  +  N
Sbjct: 37  KQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHN 96

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
               +A   F+ M  +G      +   +L        L   +  HA     G   D  + 
Sbjct: 97  SQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVP 156

Query: 322 SSIINFYSKVGL--LEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
           +S+I+ YSK G   +  A+ +F  M   RD+V+WN +I+   + G            +Y 
Sbjct: 157 NSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGG------------LY- 203

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
                + A++VF+ +  +D + WNT+L  Y  +G+  +A +LF +M       N++SW++
Sbjct: 204 -----EEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMP----ERNVVSWST 254

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           ++LG+ + G M  A+ +F +M       NL++WT ++SG  +     EAI  F +M +  
Sbjct: 255 MVLGYCKAGDMEMARMLFDKMPV----KNLVSWTIIVSGFAEKGLAREAISLFDQMEKAC 310

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           +K    T+   L+AC +   L  G  IH  +  ++    T I  +LVDMYAKCG ++ A 
Sbjct: 311 LKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAY 370

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
            VF+   +K++  +NAM+ G AMHG  V+AL LFK ++++G  P+ +T   +L AC+HAG
Sbjct: 371 DVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAG 430

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           L+++G+  F  M  D+ + P +EH+GC+V+LL R G L+EA+R+I  MP  P+A I G+L
Sbjct: 431 LIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTL 490

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L  C   N  ELA  + +HL++LEP + GN+  LSN YAA+G WN V+  R  M+  G +
Sbjct: 491 LGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTK 550

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           K  G S I++  E+H F   DRSHPK++ IY  +
Sbjct: 551 KPSGASSIEVNNEVHEFTVFDRSHPKSDNIYQVI 584



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/514 (27%), Positives = 235/514 (45%), Gaps = 76/514 (14%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +Q+HA+ILK+      + +V  KL+  ++ C  + +A+  F +++  NV  +  +I  + 
Sbjct: 37  KQLHAQILKSN--LHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHS 94

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
                 +A   F  MQ DG   DNF  P +LK C    W+    +VH  + K GF   VF
Sbjct: 95  HNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVF 154

Query: 219 VASSLIDMYGKCGD--LEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
           V +SLID Y KCG   +  A+K+F  M A R+VV+WNSMI G  + GL EEA +VF EM 
Sbjct: 155 VPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMP 214

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLL 334
               E   +S  ++L     +  +D+     A  + + M   NV+  S+++  Y K G +
Sbjct: 215 ----EKDGISWNTMLDGYVKVGKMDD-----AFKLFDEMPERNVVSWSTMVLGYCKAGDM 265

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA------------------------ 370
           E A ++F +M  +++V+W ++++ + + G +   ++                        
Sbjct: 266 EMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAAC 325

Query: 371 ----------------------------SSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                       +++VDMYAKC R++ A  VFN I  +DVV WN
Sbjct: 326 AESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWN 385

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-S 461
            +L   A  G   +A  LF +M+ EG SPN ++   V+      G +++    F  M+  
Sbjct: 386 AMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERD 445

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
             + P +  +  ++  L +     EAI   + M    + P+       L AC    ++  
Sbjct: 446 YTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNM---PMAPNAIIWGTLLGACRMHNAVEL 502

Query: 522 GRAIHGYLIRHDLCLPTPI--VTSLVDMYAKCGN 553
            R +  +L+  +   PT     + L ++YA  G+
Sbjct: 503 AREVLDHLVELE---PTDSGNFSMLSNIYAAAGD 533



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 143/296 (48%), Gaps = 14/296 (4%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN    + +V+ Y K   +++A  LF ++ VKN+ SW  I+      GL+ +A+  F +M
Sbjct: 247 RNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQM 306

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           ++  +  DN  + ++L AC   G +G G  +H  +    F     ++++L+DMY KCG L
Sbjct: 307 EKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRL 366

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
             A  VF+ +  ++VV+WN+M+ G   +G   +A+ +F  M  EG  P +V++  +L A 
Sbjct: 367 NIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCAC 426

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDAEVVFSRM-VE 346
            +   +D+G     +   + ME D  L   +      ++   + G LE+A  +   M + 
Sbjct: 427 THAGLIDDG-----IRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMA 481

Query: 347 RDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            + + W  L+ +      + V +A  ++D   + E  D+      S I      WN
Sbjct: 482 PNAIIWGTLLGACRM--HNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWN 535



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 116/249 (46%), Gaps = 18/249 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S  +++   REA+ L  +M+    ++       +L  C     +  G++IHA I KN +
Sbjct: 287 VSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASI-KNNN 345

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
           F    E +   LV  YAKC  L++A  +F  ++ K+V SW A++      G   KAL  F
Sbjct: 346 FKCTTE-ISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELF 404

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVG-----FGRAVHGYVL--KVGFDGCVFVASSL 223
             M+E+G SP+   +  VL AC   G +      F      Y L  +V   GC      +
Sbjct: 405 KRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGC------M 458

Query: 224 IDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           +D+ G+ G LEEA ++   M +A N + W +++     +   E A  V   +    +EPT
Sbjct: 459 VDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDHLV--ELEPT 516

Query: 283 RVSVTSILS 291
                S+LS
Sbjct: 517 DSGNFSMLS 525



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 106/237 (44%), Gaps = 23/237 (9%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L  CT++  ++    +H  +++ +L +   +V  L+  ++ C  +  A   F+      +
Sbjct: 27  LHKCTNLNQVKQ---LHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNV 83

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH------AGLVNEG 623
            +YN MI  ++ +    +A A F  +Q+ G   D+ TF  +L  C+          V+  
Sbjct: 84  HLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQ 143

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN--LDEALRVILTMPCDPDAHIIGSLLST 681
           +E F G  SD  V  S+      ++  S+CG+  +  A ++ ++M    D     S++S 
Sbjct: 144 IEKF-GFMSDVFVPNSL------IDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISG 196

Query: 682 CVKSNETELAEYISEHLLQLEPDNPG-NYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
             K    E A  + + +    P+  G ++  + + Y   G+ ++  ++ D M E+ +
Sbjct: 197 LAKGGLYEEARKVFDEM----PEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNV 249


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 203/630 (32%), Positives = 326/630 (51%), Gaps = 67/630 (10%)

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM------------------ 254
           F G  F+ ++L+  Y + G L +AR+VFDGM  RN  ++N++                  
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 255 -------------IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
                        +    Q+G   +A+R    M  +       S  S LSA A+  A   
Sbjct: 106 AIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRT 165

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           G+Q HA+   +    D  +G+++++ Y+K    E+A+ VF  M ER+IV+WN LI  Y Q
Sbjct: 166 GEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQ 225

Query: 362 SGQSDVVVA-----------------SSIVDMYAKCERIDNAKQVFNSII-----LRDVV 399
           +G  D  +A                 +S++   A        +QV   ++       D+V
Sbjct: 226 NGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMV 285

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           L N L+  YA  GR+ EA  +F +M +     +++S  S+I G+ ++  + +A+ +FLQM
Sbjct: 286 LNNALVDMYAKCGRTWEAKCVFDRMAIR----SVVSETSMITGYAKSANVGDAQAVFLQM 341

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
               V+ N++ W  LI+    NS   EA+  F  +    + P+  T    L+AC ++A+L
Sbjct: 342 ----VEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANL 397

Query: 520 RNGRAIHGYLIRHDLCLPTP------IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
           + G+  H ++++      +       +  SLVDMY K G+I    +VF+   +++   +N
Sbjct: 398 QLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWN 457

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           AMI GYA +G A +AL LF+ +      PDS+T   +L+AC H+GLV EG   F  M  D
Sbjct: 458 AMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTED 517

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           H + P+ +H+ C+++LL R G+L E   +I  MP +PDA +  SLL  C      ++ E+
Sbjct: 518 HGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEW 577

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            +  L +L+PDN G YV LSN YA  G+W +V +VR  MK +G+ K PGCSWI+IG +++
Sbjct: 578 AAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKVN 637

Query: 754 VFVACDRSHPKTEEIYATLALLGMHVRLVS 783
           VF+A D  HP   EI+ TL ++ M +  +S
Sbjct: 638 VFLARDNIHPCRNEIHDTLRIIQMQMSRMS 667



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 162/604 (26%), Positives = 271/604 (44%), Gaps = 100/604 (16%)

Query: 112 FARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFV 171
           FA   ++   L+  YA+  +L  A R+F  +  +N FS+ A++    R+G ++ AL  F 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 172 EMQED--------------------------GVSPDNFVL-----PNVLKACGALGWVGF 200
            + +                            +  D+FVL      + L AC +      
Sbjct: 106 AIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRT 165

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G  VH  V K      V++ ++L+DMY KC   EEA+KVFD M  RN+V+WNS+I  Y Q
Sbjct: 166 GEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQ 225

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV-INGMELDNV 319
           NG  +EA+ +F  M  +G  P  V++ S++SA A L A  EG+Q H   V  +    D V
Sbjct: 226 NGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMV 285

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           L +++++ Y+K G   +A+ VF RM  R +V+                   +S++  YAK
Sbjct: 286 LNNALVDMYAKCGRTWEAKCVFDRMAIRSVVS------------------ETSMITGYAK 327

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              + +A+ VF  ++ ++VV WN L+A YA      EA RLF +++ E + P   ++ +V
Sbjct: 328 SANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNV 387

Query: 440 I-----LGFLRNGQM-----------------------NEAKDMFLQMQSLG-------- 463
           +     L  L+ GQ                        N   DM+L+  S+         
Sbjct: 388 LNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFER 447

Query: 464 -VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
               + ++W  +I G  QN    +A+L F+ ML +  +P + T+   LSAC     ++ G
Sbjct: 448 MAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEG 507

Query: 523 RAIHGYLIRHDLCLPT-PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           R     +      +PT    T ++D+  + G++ + + + +  P +   V  A + G   
Sbjct: 508 RRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLG--- 564

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD-HQVKPSM 640
                 A  L KN+         +   +  N+  +  L N   EL  G ++D  +V+ SM
Sbjct: 565 ------ACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAEL--GKWADVFRVRRSM 616

Query: 641 EHFG 644
           +H G
Sbjct: 617 KHRG 620



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 225/472 (47%), Gaps = 64/472 (13%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SY   +++L++  +  +A+  L  M   +F +    +   L  C  ++   TG+Q+HA +
Sbjct: 114 SYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALV 173

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K+      + Y+ T LV  YAKC+  + A ++F  +  +N+ SW ++I    + G  ++
Sbjct: 174 TKSS--HGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDE 231

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVFVASSLI 224
           AL  FV M +DG  PD   L +V+ AC  L     GR VH  ++K   F   + + ++L+
Sbjct: 232 ALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALV 291

Query: 225 DMYGKCGDLEEARKVFD-------------------------------GMIARNVVAWNS 253
           DMY KCG   EA+ VFD                                M+ +NVVAWN 
Sbjct: 292 DMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNV 351

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           +I  Y  N   EEA+R+F  +  E V PT  +  ++L+A ANL  L  G+QAH   +  G
Sbjct: 352 LIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEG 411

Query: 314 MELDN------VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
              D+       +G+S+++ Y K G + D   VF RM  RD V+WN +I  Y Q+G++  
Sbjct: 412 FRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAK- 470

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG---EASRLFYQM 424
                  D     ER+  + +  +S+         T++   +  G SG   E  R F  M
Sbjct: 471 -------DALLLFERMLCSNERPDSV---------TMIGVLSACGHSGLVKEGRRYFQSM 514

Query: 425 -QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            +  GI P    +  +I    R G + E +++   ++++ ++P+ + W +L+
Sbjct: 515 TEDHGIIPTRDHYTCMIDLLGRAGHLKEVEEL---IENMPMEPDAVLWASLL 563


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  341 bits (874), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 197/596 (33%), Positives = 326/596 (54%), Gaps = 33/596 (5%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDM--YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           +  HG++++ G     + AS L  M        LE ARKVFD +   N  AWN++I  Y 
Sbjct: 47  KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYA 106

Query: 260 QNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
                  +I  F +M  E    P + +   ++ A+A + +L  G+  H +AV + +  D 
Sbjct: 107 SGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDV 166

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------QSD 366
            + +S+I+ Y   G L+ A  VF+ + E+D+V+WN +I  +VQ G            +S+
Sbjct: 167 FVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESE 226

Query: 367 VVVAS--SIVDMYAKCERIDN---AKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEA 417
            V AS  ++V + + C +I N    +QV + I    +  ++ L N +L  Y   G   +A
Sbjct: 227 DVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDA 286

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            RLF  M+      + ++W +++ G+  +     A+++   M     Q +++ W  LIS 
Sbjct: 287 KRLFDAME----EKDNVTWTTMLDGYAISEDYEAAREVLNSMP----QKDIVAWNALISA 338

Query: 478 LTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
             QN   NEA++ F E+ L+  +K +  T+   LSAC  V +L  GR IH Y+ +H + +
Sbjct: 339 YEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM 398

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              + ++L+ MY+KCG++ +++ VF+    +++ V++AMI G AMHG   EA+ +F  +Q
Sbjct: 399 NFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQ 458

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           +  + P+ +TFTN+  ACSH GLV+E   LF  M S++ + P  +H+ C+V++L R G L
Sbjct: 459 EANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYL 518

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           ++A++ I  MP  P   + G+LL  C       LAE     LL+LEP N G +V LSN Y
Sbjct: 519 EKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIY 578

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           A  G+W  VS++R  M+  GL+K PGCS I+I   +H F++ D +HP +E++Y  L
Sbjct: 579 AKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKL 634



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/540 (25%), Positives = 261/540 (48%), Gaps = 68/540 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD--ALDVASRLFCRL 142
           L++ CV  R +   +Q H  +++ G F   + Y  +KL    A     +L+ A ++F  +
Sbjct: 36  LIERCVSLRQL---KQTHGHMIRTGTF--SDPYSASKLFAMAALSSFASLEYARKVFDEI 90

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALGWVGFG 201
              N F+W  +I           ++  F++M  E    P+ +  P ++KA   +  +  G
Sbjct: 91  PKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLG 150

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           +++HG  +K      VFVA+SLI  Y  CGDL+ A KVF  +  ++VV+WNSMI G+VQ 
Sbjct: 151 QSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQK 210

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G  ++A+ +F +M  E V+ + V++  +LSA A +  L+ G+Q  +    N + ++  L 
Sbjct: 211 GSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLA 270

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +++++ Y+K G +EDA+ +F  M E+D VTW                  ++++D YA  E
Sbjct: 271 NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW------------------TTMLDGYAISE 312

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-------------- 427
             + A++V NS+  +D+V WN L++AY   G+  EA  +F+++QL+              
Sbjct: 313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTL 372

Query: 428 ----------------------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
                                 GI  N    +++I  + + G + +++++F  ++    +
Sbjct: 373 SACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE----K 428

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            ++  W+ +I GL  + CGNEA+  F +M E  +KP+  T T    AC+    +    ++
Sbjct: 429 RDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 488

Query: 526 -HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHG 583
            H     + +         +VD+  + G + +A +  +  P      V+ A++    +H 
Sbjct: 489 FHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 548



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 17/214 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKC-RNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           IS+  +  +  EA+ +  E++  +N ++        L  C     +  G+ IH+ I K+G
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHG 395

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
                N +V + L+  Y+KC  L+ +  +F  +  ++VF W+A+IG     G   +A+  
Sbjct: 396 --IRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDM 453

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-------HGYVLKVGFDGCVFVASS 222
           F +MQE  V P+     NV  AC   G V    ++       +G V +     C+     
Sbjct: 454 FYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACI----- 508

Query: 223 LIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
            +D+ G+ G LE+A K  + M I  +   W +++
Sbjct: 509 -VDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 541


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  341 bits (874), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 210/672 (31%), Positives = 342/672 (50%), Gaps = 100/672 (14%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H  +L  G    + +++ LI++Y   GD+  +R  FD +  +N+ +WNS+I  YV+ 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 262 GLNEEA---IRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           G   EA   +   + M   G + P   +   IL A     +L +GK+ H      G E D
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDD 155

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ------------- 364
             + +S+++ YS+ G+L+ A  VF  M  +D+ +WN +I+ + Q+G              
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG 215

Query: 365 ---------------------------------------SDVVVASSIVDMYAKCERIDN 385
                                                  SDV V++++++MY+K  R+ +
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQD 275

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV------ 439
           A+ VF+ + +RD+V WN+++AAY        A R F  MQL GI P++++  S+      
Sbjct: 276 AQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQ 335

Query: 440 ---------ILGFL---------------------RNGQMNEAKDMFLQMQSLGVQPNLI 469
                    ILGF+                     + G MN A  +F Q+     + + I
Sbjct: 336 LSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP----RKDTI 391

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLE-TGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           +W TL++G TQN   +EAI  +  M E     P+  T    + A + V +L+ G  IH  
Sbjct: 392 SWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAK 451

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           LI++ L L   + T L+D+Y KCG +  A  +F   P      +NA+I+   +HG   EA
Sbjct: 452 LIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEA 511

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L LFK++  + +  D ITF ++L+ACSH+GLV+EG + F  M  ++ +KPS++H+GC+V+
Sbjct: 512 LQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVD 571

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL R G L++A  ++  MP  PDA I G+LLS C      EL    S+ LL+++ +N G 
Sbjct: 572 LLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGY 631

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YV LSN YA + +W  V +VR + +++GLRK PG S + +G +  VF   +++HPK  EI
Sbjct: 632 YVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEI 691

Query: 769 YATLALLGMHVR 780
           Y  L +L   ++
Sbjct: 692 YKELKVLSAKMK 703



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 205/435 (47%), Gaps = 22/435 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS   +      A+ +L  MK    ++       +L  C    D+  G  IH  +
Sbjct: 189 SWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHV 248

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LK+G     + +V   L+  Y+K   L  A  +F ++ V+++ SW +II    +      
Sbjct: 249 LKHG--LDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPST 306

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASSLI 224
           AL  F  MQ  G+ PD   + ++      L      R++ G+V++  + D  V + ++L+
Sbjct: 307 ALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALV 366

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTR 283
           +MY K G +  A  VFD +  ++ ++WN+++ GY QNGL  EAI  +  M       P +
Sbjct: 367 NMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQ 426

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            +  SI+ A +++ AL +G + HA  + N + LD  + + +I+ Y K G LEDA  +F  
Sbjct: 427 GTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYE 486

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           +     V WN +IAS    G+ +              E +   K +    +  D + + +
Sbjct: 487 IPRDTSVPWNAIIASLGIHGRGE--------------EALQLFKDMLAERVKADHITFVS 532

Query: 404 LLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
           LL+A +  G   E  + F  MQ E GI P++  +  ++    R G + +A ++   ++++
Sbjct: 533 LLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYEL---VRNM 589

Query: 463 GVQPNLITWTTLISG 477
            +QP+   W  L+S 
Sbjct: 590 PIQPDASIWGALLSA 604


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  341 bits (874), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 206/677 (30%), Positives = 352/677 (51%), Gaps = 53/677 (7%)

Query: 129 CDALDV--ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
           C +L +  A  LF ++  +N+ SW  +I    R+    KA   F +M  +G+ PD     
Sbjct: 169 CHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFA 228

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK-CGDLEEARKVFDGMIA 245
           + L A   LG +    ++    LK GF+  V + ++++++Y +    L+ A K F+ MI 
Sbjct: 229 SALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIE 288

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           RN   W++MI      G  + AI V+    ++ +       T++++  A    +D+ +  
Sbjct: 289 RNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSI----ACRTALITGLAQCGRIDDAR-- 342

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
             +      E   V  +++I  Y + G++ +A+ +F +M  R+ ++W  +IA Y Q+G+S
Sbjct: 343 --ILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRS 400

Query: 366 DVVVA--------------SSIVDMYAKCERI---DNAKQV----------FNSIILRDV 398
           +  +               SS+  ++  C  I   +   QV          FNS      
Sbjct: 401 EEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFAC--- 457

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
              N L+  Y        A ++F +M    ++ +I+SWNS +   ++N  ++EA++ F  
Sbjct: 458 ---NALITMYGKCRNMEYARQVFSRM----VTKDIVSWNSFLAALVQNDLLDEARNTFDN 510

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           M S     + ++WTT+IS        NEA+  F+ M      P++  +T  L  C  + +
Sbjct: 511 MLS----RDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGA 566

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
            + G+ IH   I+  +     +  +L+ MY KCG    ++R+FD+   +++  +N +I+G
Sbjct: 567 SKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITG 625

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           YA HGL  EA+ ++++++  G+ P+ +TF  +LNACSHAGLV+EG + F  M  D+ + P
Sbjct: 626 YAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTP 685

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
             EH+ C+V+LL R G++  A + I  MP +PD  I  +LL  C      E+ +  +E L
Sbjct: 686 LPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKL 745

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
            ++EP N GNYV LSN Y++ G W EV++VR IMK++G+ K PGCSW QI +++H FV  
Sbjct: 746 FRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTG 805

Query: 759 DRSHPKTEEIYATLALL 775
           D+ H + EEI ATL  L
Sbjct: 806 DKQHEQIEEIVATLEEL 822



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 153/573 (26%), Positives = 259/573 (45%), Gaps = 112/573 (19%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A  +F  +  +++ +W ++I   C  G+ + A   +     D +S  N          GA
Sbjct: 53  AREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY-----DAISGGNM-------RTGA 100

Query: 195 LGWVGFGRAVHGYVLKVG--FDGCV----FVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           +   G+GR   G VL+    FDG +       +++I  Y + GD+  AR++FD M +R+V
Sbjct: 101 ILLSGYGRL--GRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 249 VAWNSMIVGYVQN----------------------------GLNE---EAIRVFYEMTLE 277
            +WNSM+ GY  +                            G  E   +A  +F +M  E
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK-VGLLED 336
           G+ P + +  S LSA   L  LD  +    +A+  G E D V+G++I+N YS+   +L+ 
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDT 278

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA-------------SSIVDMYAKCERI 383
           A   F  M+ER+  TW+ +IA+    G+ D  +A             ++++   A+C RI
Sbjct: 279 AIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRI 338

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           D+A+ +F  I    VV WN L+  Y   G   EA  LF +M       N ISW  +I G+
Sbjct: 339 DDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR----NTISWAGMIAGY 394

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            +NG+  EA                        GL Q            E+  +G+ PS 
Sbjct: 395 AQNGRSEEAL-----------------------GLLQ------------ELHRSGMLPSL 419

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
           +++T    AC+++ +L  G  +H   ++      +    +L+ MY KC N+  A++VF  
Sbjct: 420 SSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSR 479

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
             +K++  +N+ ++    + L  EA   F N+  +    D +++T I++A +HA   NE 
Sbjct: 480 MVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTIISAYAHAEQSNEA 535

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           +  F  MF +H++  S      +  LL  CG+L
Sbjct: 536 MGAFKTMFCEHELPNS----PILTILLGVCGSL 564



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 138/565 (24%), Positives = 254/565 (44%), Gaps = 98/565 (17%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R  HG   ++   GC    S+ I   G+ G + EAR+VFD M  R+++AWNSMI  Y  N
Sbjct: 26  RHAHG---ELEVSGC----SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHN 78

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G+  +A R  Y                        DA+  G       +++G        
Sbjct: 79  GM-PDAARDLY------------------------DAISGGNMRTGAILLSG-------- 105

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVV 368
                 Y ++G + +A  VF  M+ER+ V WN +I+ YVQ+G               DV 
Sbjct: 106 ------YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVS 159

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
             +S++  Y    ++ +A+ +F  +  R++V W  +++ Y  +   G+A  +F +M  EG
Sbjct: 160 SWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREG 219

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN-SCGNEA 487
           + P+  ++ S +      G ++  + + +     G + +++  T +++  +++ S  + A
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 488 ILFFQEMLETGIKPSTTTITCALS--------------------ACTDVASLRNGRAIHG 527
           I FF+ M+E   + + +T+  ALS                    AC    +L  G A  G
Sbjct: 280 IKFFESMIERN-EYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACR--TALITGLAQCG 336

Query: 528 YLIRHDLC---LPTPIVTS---LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
            +    +    +P PIV S   L+  Y + G +++AK +FD  P +    +  MI+GYA 
Sbjct: 337 RIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQ 396

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           +G + EAL L + L + G+ P   + T+I  ACS+   +  G ++        +V     
Sbjct: 397 NGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAV---KVGCQFN 453

Query: 642 HFGC--VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
            F C  ++ +  +C N++ A +V   M    D     S L+  V+++  + A    +++L
Sbjct: 454 SFACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAALVQNDLLDEARNTFDNML 512

Query: 700 QLEPDNPGNYVALSNAYAASGRWNE 724
                +  ++  + +AYA + + NE
Sbjct: 513 S---RDDVSWTTIISAYAHAEQSNE 534



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 178/390 (45%), Gaps = 58/390 (14%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  Y +   ++ A  LF ++  +N  SWA +I    + G SE+AL    E+   G+ P 
Sbjct: 359 LITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPS 418

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
              L ++  AC  +  +  G  VH   +KVG     F  ++LI MYGKC ++E AR+VF 
Sbjct: 419 LSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFS 478

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M+ +++V+WNS +   VQN L +EA   F  M    +    VS T+I+SA A+ +  +E
Sbjct: 479 RMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNE 534

Query: 302 -----------------------------------GKQAHAVAVINGMELDNVLGSSIIN 326
                                              G+Q H VA+  GM+ + ++ +++I+
Sbjct: 535 AMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALIS 594

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNA 386
            Y K G   D+  +F  M ERDI TWN +I  Y Q G     +    + MY   E     
Sbjct: 595 MYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHG-----LGREAIKMYQHME----- 643

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLR 445
               ++ +L + V +  LL A +  G   E  + F  M Q  G++P    +  ++    R
Sbjct: 644 ----SAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGR 699

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            G +  A+     M    ++P+ + W+ L+
Sbjct: 700 TGDVQGAEQFIYDMP---IEPDTVIWSALL 726



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 163/346 (47%), Gaps = 36/346 (10%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+  ++  +  EA+ LL E+              +   C     + TG Q+H+  
Sbjct: 386 SWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLA 445

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K G  F  N +    L+  Y KC  ++ A ++F R+  K++ SW + +    +  L ++
Sbjct: 446 VKVGCQF--NSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDE 503

Query: 166 ALIGFVEM-QEDGVS------------------------------PDNFVLPNVLKACGA 194
           A   F  M   D VS                              P++ +L  +L  CG+
Sbjct: 504 ARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGS 563

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           LG    G+ +H   +K+G D  + VA++LI MY KCG   ++R++FD M  R++  WN++
Sbjct: 564 LGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTI 622

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG-KQAHAVAVING 313
           I GY Q+GL  EAI+++  M   GV P  V+   +L+A ++   +DEG K   +++   G
Sbjct: 623 ITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYG 682

Query: 314 MELDNVLGSSIINFYSKVGLLEDAE-VVFSRMVERDIVTWNLLIAS 358
           +       + +++   + G ++ AE  ++   +E D V W+ L+ +
Sbjct: 683 LTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGA 728


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  341 bits (874), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 242/825 (29%), Positives = 387/825 (46%), Gaps = 153/825 (18%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           E    LL+ C+   D+  G+Q+H +I+K G   ARN+ +   LV  Y+KC +LD A+  F
Sbjct: 25  ETLAGLLRRCIGDADLAQGRQLHRQIVKQG--LARNDLLGNYLVQMYSKCRSLDDANAAF 82

Query: 140 CRLRVKNVFSW----------AAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
             LR + + +W          AA+  L  R+ L E+A              +N   PN L
Sbjct: 83  SALRSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERA--------------EN--RPNRL 126

Query: 190 KACGALGWVGFG------------RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
                LG +  G            R VH  +     +  +FVA++L+D YGKCG +E A 
Sbjct: 127 TIIAVLGAIASGDPSSSSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESAL 186

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLN-EEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           +VF  +   +++ WN+ I+    N    + A+ +   M LEG+ P R S  +ILS+  + 
Sbjct: 187 EVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDH 246

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            +L   +  HA     G   D V+ ++++  Y + G ++++  VF  M  R+ V+WN +I
Sbjct: 247 SSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMI 306

Query: 357 ASYV----------------QSG------------------------------------- 363
           A++                 Q G                                     
Sbjct: 307 AAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAG 366

Query: 364 -QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
            + DV+V +++V MY     ID A+  F++I  +++V WN +L AY D GR+ EA  LF 
Sbjct: 367 LEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFA 426

Query: 423 QMQLEGISPNIISW---------------------------------NSVILGFLRNGQM 449
            M+ + ++PN +S+                                 N V+  F R+G +
Sbjct: 427 AMKRQSLAPNKVSYLAVLGCCEDVSEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSL 486

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
            EA   F       V  + ++W T ++ L+     + AI  F  M   G +P   T+   
Sbjct: 487 EEAMAAF----DATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSV 542

Query: 510 LSACTDVASLRNGRAIHGYL-----IRHDLCLPTPIVTSLVDMYAKCGN-IHQAKRVFDI 563
           +  C D+ +L  GR+I   L     +  D+ + + ++    +M AKCG+ + + +R+F  
Sbjct: 543 VDVCADLGTLELGRSIQQQLSAAIEVERDVVVESAVM----NMVAKCGSSVDECERLFAR 598

Query: 564 SPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLV 620
            P   K+L  +N MI+ YA HG   +AL LF+ +QQ+  + PDS TF ++L+ CSHAGLV
Sbjct: 599 MPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLV 658

Query: 621 NEGLELFVGMFSDHQV----KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            +G+  F   F   +V    +  +EH+ C+V++L R G L EA   I  MP   D+ +  
Sbjct: 659 EDGIHCF---FLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWT 715

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           SLL  C    + E  E  +   ++L   +   YV LSN YAA+GRW +  +VR+ M E+ 
Sbjct: 716 SLLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDMAERR 775

Query: 737 LRKN-PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           ++K  PG S I +   +H F A DRSHP+++EIYA L  L   +R
Sbjct: 776 VKKRAPGKSSIVVKNRVHEFFARDRSHPQSDEIYAELERLKGLIR 820


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  341 bits (874), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 215/710 (30%), Positives = 359/710 (50%), Gaps = 64/710 (9%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           +N      ++  YAK   ++ A  LF ++  +N+ SW  ++      G  ++A   FV M
Sbjct: 4   KNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIM 63

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
                  D F    ++      G V   R +    L   +   V   +++I  Y K G +
Sbjct: 64  PR----RDLFSWTLMITCYTRNGEVEKARELFD-SLPCSYRKGVACWNAMISGYVKKGRV 118

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV-------------- 279
            EA+++FD M  +N+++WNSM+ GY QN      +  F EM    V              
Sbjct: 119 NEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVG 178

Query: 280 -------------EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSII 325
                        +P  VS  ++LS  A    + E ++     + + M   N++  +++I
Sbjct: 179 DLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRR-----LFDQMPSRNIVSWNAMI 233

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD-------------VVVASS 372
           + Y +   +++A  +F  M ERD V+W  +I  YV+ G+ D             +   ++
Sbjct: 234 SAYVQRCEIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTA 293

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           ++  Y +C ++D A++ F+ I   DVV WN ++A YA  GR  EA  L  +M    ++ +
Sbjct: 294 MISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRM----VNKD 349

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
           +++WN++I  + + GQM+ A  +F +M     + +L++W +LI+G   N    +A+  F 
Sbjct: 350 MVTWNTMISCYAQVGQMDRAVKIFEEMG----ERDLVSWNSLIAGFMLNGQNLDALKSFA 405

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
            M   G KP   +  C LS+C  +A+L+ G  +H  +++        +  +L+ MYAKCG
Sbjct: 406 LMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCG 465

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
            I +A  VF+     ++  +N++I GYA++G   EAL LF+ +  +G+ PD +TF  IL+
Sbjct: 466 RILEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILS 525

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           AC+HAG+V+ GL+LF  M   + ++P  EH+ C+V+LL R G LDEA  ++  M     A
Sbjct: 526 ACNHAGMVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATA 585

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            + G+LL  C      EL    +  L + EP    NYV LSN +A + RWNEV +VR +M
Sbjct: 586 GVWGALLGACRAHGNLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLM 645

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACD--RSHPKTEEIYATLALLGMHVR 780
                 K PGCSW+++  ++H F++ D  RS P   +I  TLA L  H+R
Sbjct: 646 NASSTVKEPGCSWVEVRNQVHGFLSDDSTRSRP---DIGVTLASLNSHIR 692



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 126/505 (24%), Positives = 235/505 (46%), Gaps = 65/505 (12%)

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR--VSVTSILSASANLDALD 300
           M  +N V +NSMI  Y +NG    A  +F +M      P R  VS  +++S   +    D
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKM------PRRNLVSWNTMVSGYLHNGKFD 54

Query: 301 EGKQAHAVAVINGMELDNVLGSSI-INFYSKVGLLEDAEVVFSRM---VERDIVTWNLLI 356
           E   A+ + VI  M   ++   ++ I  Y++ G +E A  +F  +     + +  WN +I
Sbjct: 55  E---AYKLFVI--MPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMI 109

Query: 357 ASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           + YV+ G+              +++  +S++  Y +  ++    + FN +  RDVV WN 
Sbjct: 110 SGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNL 169

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           ++  +  +G    A + F + Q     PN++SW +++ GF RNG + E++ +F QM S  
Sbjct: 170 MVDGFIQVGDLDSAWKFFQETQ----KPNVVSWVTMLSGFARNGNILESRRLFDQMPS-- 223

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
              N+++W  +IS   Q    +EA   F+EM E      + + T  ++    +  L   R
Sbjct: 224 --RNIVSWNAMISAYVQRCEIDEASRLFEEMPER----DSVSWTTMINGYVRIGKLDEAR 277

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
            +   +   ++   T +++     Y +C  + +A+R FD   + ++  +NAMI+GYA HG
Sbjct: 278 ELLNEMPYRNIGAQTAMISG----YIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHG 333

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
              EAL L K +    ++ D +T+  +++  +  G ++  +++F  M     V  +    
Sbjct: 334 RINEALCLSKRM----VNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIA 389

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCD---PDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           G ++N      NLD AL+    M  +   PD       LS+C      ++   + + +++
Sbjct: 390 GFMLN----GQNLD-ALKSFALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVK 444

Query: 701 LEPDNPGNYVALSNA----YAASGR 721
                  NY+ ++NA    YA  GR
Sbjct: 445 ---GGYLNYLVVNNALITMYAKCGR 466



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 118/508 (23%), Positives = 210/508 (41%), Gaps = 97/508 (19%)

Query: 95  MYTGQQIHARILKNGDFF----ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSW 150
           M +G   +  IL++   F    +RN      ++  Y +   +D ASRLF  +  ++  SW
Sbjct: 201 MLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPERDSVSW 260

Query: 151 AAIIGLNCRVGLSEKA------------------LIGFVEMQE--------DGVSPDNFV 184
             +I    R+G  ++A                  + G+++  +        D +   + V
Sbjct: 261 TTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFDEIGTWDVV 320

Query: 185 LPNVLKACGALGWVGFGRAVHGYVL-KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
             N + A    G+   GR      L K   +  +   +++I  Y + G ++ A K+F+ M
Sbjct: 321 CWNAMIA----GYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEEM 376

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
             R++V+WNS+I G++ NG N +A++ F  M  EG +P ++S    LS+ A + AL  G 
Sbjct: 377 GERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAALQVGN 436

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
           Q H V V  G     V+ +++I  Y+K G + +A +VF+ +   D+++WN LI  Y  +G
Sbjct: 437 QLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVISWNSLIGGYAING 496

Query: 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
                        Y K                                    EA +LF +
Sbjct: 497 -------------YGK------------------------------------EALKLFEE 507

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNS 482
           M  EG++P+ +++  ++      G ++    +F  M  +  ++P    +  ++  L +  
Sbjct: 508 MASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVG 567

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
             +EA    + M    +K +       L AC    +L  GR     L  H L    P  T
Sbjct: 568 RLDEAFEIVRGM---KVKATAGVWGALLGACRAHGNLELGR-----LAAHKLSEFEPHKT 619

Query: 543 SLVDMYAKCGNIH-QAKRVFDISPSKEL 569
           S    Y    NIH +A R  ++   + L
Sbjct: 620 S---NYVLLSNIHAEANRWNEVQEVRML 644


>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
 gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 820

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 230/746 (30%), Positives = 370/746 (49%), Gaps = 100/746 (13%)

Query: 134 VASRLFCRLRVKNVFSW-AAIIGLNCRVGLSEKALIGFVEMQEDG--VSPDNFVLPNVLK 190
           +A +LF  +       W   IIG  C   L  +AL+ +  M++     + D +   + LK
Sbjct: 57  LARQLFDAIPKPTTVLWNTIIIGFICN-NLPHEALLFYSRMKKTAPFTNCDAYTYSSTLK 115

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY------GKCGDLEEARKVFDGMI 244
           AC     +  G+AVH ++++   +    V +SL++MY        C + +  RKVFD M 
Sbjct: 116 ACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMR 175

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            +NVVAWN++I  YV+ G N EA R F  M    V+P+ VS  ++  A +   ++ +   
Sbjct: 176 RKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKANV 235

Query: 305 AHAVAVINGMEL--DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN--------- 353
            + + +  G E   D  + SS I+ Y+++G +E +  VF   VER+I  WN         
Sbjct: 236 FYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQN 295

Query: 354 --------------------------LLIASYVQSGQS------------------DVVV 369
                                     LL AS V + Q                    +V+
Sbjct: 296 DCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVI 355

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
            +S++ MY++C  +  +  VF S+  RDVV WNT+++A+   G   E   L Y+MQ +G 
Sbjct: 356 VNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF 415

Query: 430 SPNIISWNSVILGF--LRNGQMNEAKDMFLQMQSL---GVQPNLI--------------- 469
             + I+  +++     LRN ++ +    FL  Q +   G+   LI               
Sbjct: 416 KIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKL 475

Query: 470 ------------TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
                       TW ++ISG TQN    +  L F++MLE  I+P+  T+   L AC+ + 
Sbjct: 476 FEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIG 535

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           S+  G+ +HG+ IR  L     + ++LVDMY+K G I  A+ +F  +  +    Y  MI 
Sbjct: 536 SVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMIL 595

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
           GY  HG+   A++LF ++Q+ GI PD+ITF  +L+ACS++GL++EGL++F  M   + ++
Sbjct: 596 GYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQ 655

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSLLSTCVKSNETELAEYISE 696
           PS EH+ C+ ++L R G ++EA   +  +  + + A + GSLL +C    E ELAE +SE
Sbjct: 656 PSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSE 715

Query: 697 HLLQLEPDN--PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
            L + +      G  V LSN YA   +W  V +VR  M+EKGL+K  G S I+I   ++ 
Sbjct: 716 RLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNC 775

Query: 755 FVACDRSHPKTEEIYATLALLGMHVR 780
           FV+ D+ HP + EIY  +  L   +R
Sbjct: 776 FVSRDQEHPHSSEIYDVIDGLAKDMR 801



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 148/642 (23%), Positives = 272/642 (42%), Gaps = 142/642 (22%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM--TLEGVEPTRVSVTS 288
           G+ + AR++FD +     V WN++I+G++ N L  EA+  +  M  T         + +S
Sbjct: 53  GNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSS 112

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED------AEVVFS 342
            L A A    L  GK  H   +        V+ +S++N Y       D         VF 
Sbjct: 113 TLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFD 172

Query: 343 RMVERDIVTWNLLIASYVQSGQS-----------------------DVVVASSI------ 373
            M  +++V WN LI+ YV++G++                       +V  A SI      
Sbjct: 173 NMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKK 232

Query: 374 -------------------------VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                                    + MYA+   I+++++VF+S + R++ +WNT++  Y
Sbjct: 233 ANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVY 292

Query: 409 ADLGRSGEASRLFYQM------------------------------QLEG-ISPN----- 432
                  E+  LF +                               Q  G +S N     
Sbjct: 293 VQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELP 352

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
           I+  NS+++ + R G ++++  +FL M+    + ++++W T+IS   QN   +E ++   
Sbjct: 353 IVIVNSLMVMYSRCGSVHKSFGVFLSMR----ERDVVSWNTMISAFVQNGLDDEGLMLVY 408

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           EM + G K    T+T  LSA +++ +   G+  H +LIR  +     + + L+DMY+K G
Sbjct: 409 EMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEG-MNSYLIDMYSKSG 467

Query: 553 NIHQAKRVFDIS--PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
            I  ++++F+ S    ++   +N+MISGY  +G   +   +F+ + ++ I P+++T  +I
Sbjct: 468 LIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASI 527

Query: 611 LNACSHAGLVNEGLEL-------------FVG------------------MFSDHQVKPS 639
           L ACS  G V+ G +L             FV                   MFS  + + S
Sbjct: 528 LPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNS 587

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMP---CDPDAHIIGSLLSTCVKSNETELAEYISE 696
           + +   ++    + G  + A+ + L+M      PDA    ++LS C  S   +    I E
Sbjct: 588 VTYTTMILG-YGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFE 646

Query: 697 HLLQLEPDNPG--NYVALSNAYAASGRWNEVSQVRDIMKEKG 736
            + ++    P   +Y  +++     GR NE  +    + E+G
Sbjct: 647 EMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEG 688



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 131/243 (53%), Gaps = 5/243 (2%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           E + L+ EM+ + F+I       LL      R+   G+Q HA +++ G  F   E + + 
Sbjct: 402 EGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQF---EGMNSY 458

Query: 122 LVVFYAKCDALDVASRLF--CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           L+  Y+K   + ++ +LF       ++  +W ++I    + G +EK  + F +M E  + 
Sbjct: 459 LIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIR 518

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           P+   + ++L AC  +G V  G+ +HG+ ++   D  VFVAS+L+DMY K G ++ A  +
Sbjct: 519 PNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDM 578

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F     RN V + +MI+GY Q+G+ E AI +F  M   G++P  ++  ++LSA +    +
Sbjct: 579 FSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLI 638

Query: 300 DEG 302
           DEG
Sbjct: 639 DEG 641



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 27/251 (10%)

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
           ++P   S  S +    ++G    A+ +F  +     +P  + W T+I G   N+  +EA+
Sbjct: 35  LTPQTPSIRSRLSKICQDGNPQLARQLFDAIP----KPTTVLWNTIIIGFICNNLPHEAL 90

Query: 489 LFFQEMLETGIKPSTT----TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP---IV 541
           LF+  M +T   P T     T +  L AC +  +L+ G+A+H +LIR   CL      + 
Sbjct: 91  LFYSRMKKTA--PFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIR---CLQNSSRVVH 145

Query: 542 TSLVDMYAKCGNIHQ------AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
            SL++MY  C N          ++VFD    K +  +N +IS Y   G   EA   F  +
Sbjct: 146 NSLMNMYVSCLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIM 205

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM---FSDHQVKPSMEHFGCVVNLLSR 652
            +  + P  ++F N+  A S +  + +   +F G+     D  VK  +      +++ + 
Sbjct: 206 MRMEVKPSPVSFVNVFPAVSISRSIKKA-NVFYGLMLKLGDEYVK-DLFVVSSAISMYAE 263

Query: 653 CGNLDEALRVI 663
            G+++ + RV 
Sbjct: 264 LGDIESSRRVF 274


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 218/744 (29%), Positives = 384/744 (51%), Gaps = 50/744 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ++  +KE +I EA ++   M  RN       +  ++ G V   D+   +++   + +   
Sbjct: 240 LTGYAKEGRIEEAREVFESMTERNVVS----WNAMISGYVQNGDLKNARKLFDEMPE--- 292

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
              +N      +V  Y  C  +  A  LF ++  +N  SW  +I     +    +A   F
Sbjct: 293 ---KNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVF 349

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           V+M      PD  +   VL A   L  +    ++    +K G++G V V S++++ Y + 
Sbjct: 350 VKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRN 409

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L+ A   F+ M  RN  +W +MI  + Q G  ++AI+++  +     E T  + T+++
Sbjct: 410 GSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVP----EQTVATKTAMM 465

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDI 349
           +A A +     G+   A  + + +   NV+  ++II  Y++ G+L++A+ +F +M  ++ 
Sbjct: 466 TAYAQV-----GRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNS 520

Query: 350 VTWNLLIASYVQSGQS--------------DVVVASSIVDMYAKCERIDNAK--QVFNSI 393
            +W  +IA +VQ+ +S               V   SS     + C  I + +  +V +S+
Sbjct: 521 ASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSL 580

Query: 394 ILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
            ++     +  + N L++ YA  G   + S +F  ++++    + +SWNS+I G   N  
Sbjct: 581 AIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVK----DTVSWNSLISGLSENYM 636

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           +++A+ +F +M     + ++++WT +IS   Q   G  A+  F +ML  GIKP+  T+T 
Sbjct: 637 LDDARVVFEKMP----KRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTS 692

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            LSAC ++ +++ G   H  + +        +  SL+ MY KCG       VF+  P  +
Sbjct: 693 LLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHD 751

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           L  +NA++ G A +GL  EA+ +F+ ++ +GI PD ++F  +L ACSHAGLV+EG   F 
Sbjct: 752 LITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFN 811

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
            M   + + P + H+ C+V+LL R G L EA  +I  MP  PD+ I  +LL  C      
Sbjct: 812 SMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNV 871

Query: 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           EL + ++E L Q+       YV LSN +A+ G W++V+++R +MK++GL K PG SWIQ+
Sbjct: 872 ELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQV 931

Query: 749 GEELHVFVACDRSHPKTEEIYATL 772
             +LH FV  DR+H + EEIY+ L
Sbjct: 932 KNKLHCFVTGDRTHDQIEEIYSAL 955



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 164/552 (29%), Positives = 272/552 (49%), Gaps = 56/552 (10%)

Query: 115 NEYVETKLVVF------YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           NE ++  +V +      Y++   +D A  LF     KN+ +W  ++    + G  E+A  
Sbjct: 195 NEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEARE 254

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC----VFVASSLI 224
            F  M E  V   N ++          G+V  G   +   L   FD      V   +S++
Sbjct: 255 VFESMTERNVVSWNAMIS---------GYVQNGDLKNARKL---FDEMPEKNVASWNSVV 302

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
             Y  C  + EAR++FD M  RN V+W  MI GYV      EA  VF +M      P + 
Sbjct: 303 TGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQS 362

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
               +LSA   LD L+       +A+  G E D V+GS+I+N Y++ G L+ A   F  M
Sbjct: 363 IFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETM 422

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
            ER+  +W  +IA+                  +A+C R+D+A Q++  +  + V     +
Sbjct: 423 PERNEYSWTTMIAA------------------FAQCGRLDDAIQLYERVPEQTVATKTAM 464

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           + AYA +GR  +A  +F ++    ++PN+++WN++I G+ +NG + EAKD+F +M     
Sbjct: 465 MTAYAQVGRIQKARLIFDEI----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPV--- 517

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
             N  +W  +I+G  QN    EA+    E+  +G  PS ++ T ALSAC ++  +  GR 
Sbjct: 518 -KNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRV 576

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           IH   I+      + ++  L+ MYAKCGN+     VF     K+   +N++ISG + + +
Sbjct: 577 IHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYM 636

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG 644
             +A  +F+ + ++    D +++T I++A   AG     L+LF+ M +   +KP+     
Sbjct: 637 LDDARVVFEKMPKR----DVVSWTAIISAYVQAGHGEVALDLFLDMLA-RGIKPNQL--- 688

Query: 645 CVVNLLSRCGNL 656
            V +LLS CGNL
Sbjct: 689 TVTSLLSACGNL 700



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 171/347 (49%), Gaps = 38/347 (10%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+   + ++ REA++LL E+           +   L  C    D+  G+ IH+  
Sbjct: 522 SWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLA 581

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK-------------------- 145
           +K G  F  N YV   L+  YAKC  ++  S +F  +RVK                    
Sbjct: 582 IKTGCQF--NSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDD 639

Query: 146 -----------NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
                      +V SW AII    + G  E AL  F++M   G+ P+   + ++L ACG 
Sbjct: 640 ARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGN 699

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           LG +  G   H  + K+GFD  +FV +SLI MY KCG  E+   VF+ M   +++ WN++
Sbjct: 700 LGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAV 758

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           +VG  QNGL +EAI++F +M +EG+ P ++S   +L A ++   +DEG  AH  ++    
Sbjct: 759 LVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEG-WAHFNSMTQKY 817

Query: 315 ELDNVL--GSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
            +  ++   + +++   + G L +AE +   M V+ D V W  L+ +
Sbjct: 818 GIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGA 864



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 140/603 (23%), Positives = 257/603 (42%), Gaps = 123/603 (20%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           +F  ++ I   G+ G +EEAR+VF+ MI R+VV+WNSMI GY QNG  +EA  +F     
Sbjct: 171 LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVG 230

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           + +    + +T                                        Y+K G +E+
Sbjct: 231 KNIRTWTILLTG---------------------------------------YAKEGRIEE 251

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKCERI 383
           A  VF  M ER++V+WN +I+ YVQ+G             + +V   +S+V  Y  C R+
Sbjct: 252 AREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRM 311

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM------------------- 424
             A+++F+ +  R+ V W  +++ Y  +    EA  +F +M                   
Sbjct: 312 SEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAI 371

Query: 425 ----QLE------------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
                LE            G   +++  ++++  + RNG ++ A   F  M     + N 
Sbjct: 372 TGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMP----ERNE 427

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
            +WTT+I+   Q    ++AI  ++ + E     +  T T  ++A   V  ++  R I   
Sbjct: 428 YSWTTMIAAFAQCGRLDDAIQLYERVPEQ----TVATKTAMMTAYAQVGRIQKARLIFDE 483

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           ++  ++     I+      Y + G + +AK +F   P K    + AMI+G+  +  + EA
Sbjct: 484 ILNPNVVAWNAIIAG----YTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREA 539

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L L   L + G  P   +FT+ L+AC++ G V  G      +     +K   +    V+N
Sbjct: 540 LELLIELHRSGSVPSDSSFTSALSACANIGDVEIGR-----VIHSLAIKTGCQFNSYVMN 594

Query: 649 ----LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
               + ++CGN+++   V  T+    D     SL+S   ++   + A  + E   ++   
Sbjct: 595 GLISMYAKCGNVEDGSHVFRTIRVK-DTVSWNSLISGLSENYMLDDARVVFE---KMPKR 650

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN--------PGC---SWIQIGEELH 753
           +  ++ A+ +AY  +G       +   M  +G++ N          C     I++GE+ H
Sbjct: 651 DVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFH 710

Query: 754 VFV 756
             +
Sbjct: 711 ALI 713



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 161/381 (42%), Gaps = 69/381 (18%)

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
           ++ Q+ +   ++ +    +  R++ A++VFN +I RDVV WN+++  Y+  G+  EA  L
Sbjct: 165 ETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLL 224

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
           F       +  NI +W  ++ G+ + G++ EA+++F  M     + N+++W  +ISG  Q
Sbjct: 225 FDAF----VGKNIRTWTILLTGYAKEGRIEEAREVFESM----TERNVVSWNAMISGYVQ 276

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
           N     A   F EM E                  +VAS                      
Sbjct: 277 NGDLKNARKLFDEMPE-----------------KNVASW--------------------- 298

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
             S+V  Y  C  + +A+ +FD  P +    +  MISGY       EA  +F  + +   
Sbjct: 299 -NSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVA 357

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH----FGCVVNLLSRCGNL 656
            PD   F  +L+A +  GL  + LEL +G      +K   E        ++N  +R G+L
Sbjct: 358 RPDQSIFVVVLSAIT--GL--DDLEL-IGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSL 412

Query: 657 DEALRVILTMPCDPD---AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           D A+    TMP   +     +I +        +  +L E + E  +  +        A+ 
Sbjct: 413 DLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATK-------TAMM 465

Query: 714 NAYAASGRWNEVSQVRDIMKE 734
            AYA  GR   + + R I  E
Sbjct: 466 TAYAQVGR---IQKARLIFDE 483


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 194/609 (31%), Positives = 321/609 (52%), Gaps = 92/609 (15%)

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           + G  +EA+ +   M L+G          +L   A L +L++G++ HA  + +G++ +  
Sbjct: 24  KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV------------------- 360
           L +++++ Y+K G L DA  VF  + +R+IV+W  +I ++V                   
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 361 ---------------------QSGQS---DVV---------VASSIVDMYAKCERIDNAK 387
                                Q GQ    ++V         V +S+V MYAKC  I  A+
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW----------- 436
            +F+ +  ++VV W  L+A YA  G+   A  L   MQ   ++PN I++           
Sbjct: 204 VIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPA 263

Query: 437 ------------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
                                   NS+I  + + G + EA+ +F  +       +++TWT
Sbjct: 264 ALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLP----HRDVVTWT 319

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
            +++G  Q    +EAI  F+ M + GIKP   T T  L++C+  A L+ G+ IH  L+  
Sbjct: 320 AMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHA 379

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY-AMHGLAVEALAL 591
              L   + ++LV MYAKCG++  A  VF+    + +  + A+I+G  A HG   EAL  
Sbjct: 380 GYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEY 439

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  ++++GI PD +TFT++L+AC+H GLV EG + F  M+ D+ +KP +EH+ C V+LL 
Sbjct: 440 FDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLG 499

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G+L+EA  VIL+MP  P   + G+LLS C   ++ E  E  +E++L+L+PD+ G YVA
Sbjct: 500 RAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVA 559

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
           LS+ YAA+GR+ +  +VR +M+++ + K PG SWI++  ++HVF   D+SHP++E+IY  
Sbjct: 560 LSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVE 619

Query: 772 LALLGMHVR 780
           L  L   ++
Sbjct: 620 LGKLTEQIK 628



 Score =  226 bits (576), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 140/481 (29%), Positives = 243/481 (50%), Gaps = 29/481 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S L K  +++EA+ ++  M  +  ++  +++  LLQ C   R +  G+++HA ILK+G 
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSG- 77

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               N Y+E  L+  YAKC +L  A R+F  +R +N+ SW A+I        + +A   +
Sbjct: 78  -IQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCY 136

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M+  G  PD     ++L A      +  G+ VH  +++ G +    V +SL+ MY KC
Sbjct: 137 ETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKC 196

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           GD+ +AR +FD +  +NVV W  +I GY Q G  + A+ +   M    V P +++  SIL
Sbjct: 197 GDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASIL 256

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
                  AL+ GK+ H   + +G   +  + +S+I  Y K G LE+A  +FS +  RD+V
Sbjct: 257 QGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVV 316

Query: 351 TWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           TW  ++  Y Q G                 + D +  +S++   +    +   K++   +
Sbjct: 317 TWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQL 376

Query: 394 ILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL-RNGQ 448
           +      DV L + L++ YA  G   +AS +F QM       N+++W ++I G   ++G+
Sbjct: 377 VHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMS----ERNVVAWTAIITGCCAQHGR 432

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTTIT 507
             EA + F QM+  G++P+ +T+T+++S  T      E    F+ M L+ GIKP     +
Sbjct: 433 CREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYS 492

Query: 508 C 508
           C
Sbjct: 493 C 493



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 204/387 (52%), Gaps = 21/387 (5%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           GQ++H  I++ G        V T LV  YAKC  +  A  +F RL  KNV +W  +I   
Sbjct: 167 GQKVHMEIVEAG--LELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGY 224

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            + G  + AL     MQ+  V+P+     ++L+ C     +  G+ VH Y+++ G+   +
Sbjct: 225 AQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGREL 284

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           +V +SLI MY KCG LEEARK+F  +  R+VV W +M+ GY Q G ++EAI +F  M  +
Sbjct: 285 WVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQ 344

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G++P +++ TS+L++ ++   L EGK+ H   V  G  LD  L S++++ Y+K G ++DA
Sbjct: 345 GIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDA 404

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC-ERIDNAKQVFNSIILR 396
            +VF++M ER++V W  +I              +     + +C E ++   Q+    I  
Sbjct: 405 SLVFNQMSERNVVAWTAII--------------TGCCAQHGRCREALEYFDQMKKQGIKP 450

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDM 455
           D V + ++L+A   +G   E  + F  M L+ GI P +  ++  +    R G + EA+++
Sbjct: 451 DKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENV 510

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNS 482
            L M  +   P    W  L+S    +S
Sbjct: 511 ILSMPFI---PGPSVWGALLSACRVHS 534


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 194/565 (34%), Positives = 301/565 (53%), Gaps = 58/565 (10%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           FV + L+ +Y + G  + A KVFD +   N   W S+I GYV+N   +EA  +F +M  E
Sbjct: 36  FVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRRE 95

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            +     +++S+L A A L     G+  +  A                            
Sbjct: 96  PISVLNFTISSVLKALARLTRFKGGQAVYGFA---------------------------- 127

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
              F  M E+DIV+WN++I+ Y   G +D               R+D A++ F+ +  R+
Sbjct: 128 ---FDEMCEKDIVSWNMMISGY---GNND---------------RVDIARKFFDRMPERN 166

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ-MNEAKDMF 456
           VV W +++  Y   G   EA  LF  M ++    ++ SWN ++ G++  G   N A+ +F
Sbjct: 167 VVSWTSMICGYVKAGDMAEAQVLFDSMPVK----DLASWNVMVSGYMDIGDYTNGARCLF 222

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
            QM       NL+TW+T+I G  +N    +A+  F+   E  IKP  T I   +SAC+ +
Sbjct: 223 DQMP----MKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQL 278

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
             +    +I    +   L     + TSL+DMYAKCG+I +A ++F+++  K+L  Y+ MI
Sbjct: 279 GIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMI 338

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +  A HGL  +A+ LF  +Q+  I PDS+TF  +L AC+H GLV+EG + F  M  +  +
Sbjct: 339 AALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGI 398

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
           +PS +H+ CVV+LL R G L+EA  +I  MP  P + + G+LL+ C      +LAE  + 
Sbjct: 399 QPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAA 458

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
            L ++EPDN GNY+ LSN YAA+GRW  V++VR  ++E  +RKN G SWI++   +H FV
Sbjct: 459 ELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELSHVVHEFV 518

Query: 757 ACDRSHPKTEEIYATLALLGMHVRL 781
             D SH  ++ I   L LL   ++L
Sbjct: 519 MGDMSHTDSDSISLILYLLCEDMKL 543



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 213/438 (48%), Gaps = 35/438 (7%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           + IHAR+L      A +E+V  KL+  Y++  A D A ++F  +   N + W ++I    
Sbjct: 19  KSIHARLLIESSV-ASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYV 77

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
                ++A   F++M+ + +S  NF + +VLKA   L     G+AV+G+      +  + 
Sbjct: 78  ENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEMCEKDIV 137

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
             + +I  YG    ++ ARK FD M  RNVV+W SMI GYV+ G   EA  +F  M ++ 
Sbjct: 138 SWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKD 197

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN-VLGSSIINFYSKVGLLEDA 337
           +    V V      S  +D  D    A    + + M + N V  S++I  Y++ G    A
Sbjct: 198 LASWNVMV------SGYMDIGDYTNGAR--CLFDQMPMKNLVTWSTMIGGYARNGQPLKA 249

Query: 338 EVVFSRMVERDIV---TWNL-----------------LIASYV-QSGQSDVVVASSIVDM 376
             +F R  E+DI    T+ L                 +I +YV  S  SD+ V +S++DM
Sbjct: 250 LELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDM 309

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           YAKC  I+ A Q+F     +D++ ++T++AA A+ G   +A  LF +MQ   I P+ +++
Sbjct: 310 YAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTF 369

Query: 437 NSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
             V+      G ++E +  F QM +  G+QP+   +  ++  L +  C  EA    + M 
Sbjct: 370 LGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNM- 428

Query: 496 ETGIKPSTTTITCALSAC 513
              I P +      L+AC
Sbjct: 429 --PIAPHSVVWGALLAAC 444


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 206/677 (30%), Positives = 352/677 (51%), Gaps = 53/677 (7%)

Query: 129 CDALDV--ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
           C +L +  A  LF ++  +N+ SW  +I    R+    KA   F +M  +G+ PD     
Sbjct: 169 CHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFA 228

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK-CGDLEEARKVFDGMIA 245
           + L A   LG +    ++    LK GF+  V + ++++++Y +    L+ A K F+ MI 
Sbjct: 229 SALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIE 288

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           RN   W++MI      G  + AI V+    ++ +       T++++  A    +D+ +  
Sbjct: 289 RNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSI----ACRTALITGLAQCGRIDDAR-- 342

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
             +      E   V  +++I  Y + G++ +A+ +F +M  R+ ++W  +IA Y Q+G+S
Sbjct: 343 --ILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRS 400

Query: 366 DVVVA--------------SSIVDMYAKCERI---DNAKQV----------FNSIILRDV 398
           +  +               SS+  ++  C  I   +   QV          FNS      
Sbjct: 401 EEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFAC--- 457

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
              N L+  Y        A ++F +M    ++ +I+SWNS +   ++N  ++EA++ F  
Sbjct: 458 ---NALITMYGKCRNMEYARQVFSRM----VTKDIVSWNSFLAALVQNDLLDEARNTFDN 510

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           M S     + ++WTT+IS        NEA+  F+ M      P++  +T  L  C  + +
Sbjct: 511 MLS----RDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGA 566

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
            + G+ IH   I+  +     +  +L+ MY KCG    ++R+FD+   +++  +N +I+G
Sbjct: 567 SKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITG 625

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           YA HGL  EA+ ++++++  G+ P+ +TF  +LNACSHAGLV+EG + F  M  D+ + P
Sbjct: 626 YAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTP 685

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
             EH+ C+V+LL R G++  A + I  MP +PD  I  +LL  C      E+ +  +E L
Sbjct: 686 LPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKL 745

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
            ++EP N GNYV LSN Y++ G W EV++VR IMK++G+ K PGCSW QI +++H FV  
Sbjct: 746 FRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTG 805

Query: 759 DRSHPKTEEIYATLALL 775
           D+ H + EEI ATL  L
Sbjct: 806 DKQHEQIEEIVATLEEL 822



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 153/573 (26%), Positives = 259/573 (45%), Gaps = 112/573 (19%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A  +F  +  +++ +W ++I   C  G+ + A   +     D +S  N          GA
Sbjct: 53  AREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY-----DAISGGNM-------RTGA 100

Query: 195 LGWVGFGRAVHGYVLKVG--FDGCV----FVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           +   G+GR   G VL+    FDG +       +++I  Y + GD+  AR++FD M +R+V
Sbjct: 101 ILLSGYGRL--GRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 249 VAWNSMIVGYVQN----------------------------GLNE---EAIRVFYEMTLE 277
            +WNSM+ GY  +                            G  E   +A  +F +M  E
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK-VGLLED 336
           G+ P + +  S LSA   L  LD  +    +A+  G E D V+G++I+N YS+   +L+ 
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDT 278

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA-------------SSIVDMYAKCERI 383
           A   F  M+ER+  TW+ +IA+    G+ D  +A             ++++   A+C RI
Sbjct: 279 AIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRI 338

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           D+A+ +F  I    VV WN L+  Y   G   EA  LF +M       N ISW  +I G+
Sbjct: 339 DDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR----NTISWAGMIAGY 394

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            +NG+  EA                        GL Q            E+  +G+ PS 
Sbjct: 395 AQNGRSEEAL-----------------------GLLQ------------ELHRSGMLPSL 419

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
           +++T    AC+++ +L  G  +H   ++      +    +L+ MY KC N+  A++VF  
Sbjct: 420 SSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSR 479

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
             +K++  +N+ ++    + L  EA   F N+  +    D +++T I++A +HA   NE 
Sbjct: 480 MVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTIISAYAHAEQSNEA 535

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           +  F  MF +H++  S      +  LL  CG+L
Sbjct: 536 MGAFKTMFCEHELPNS----PILTILLGVCGSL 564



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 137/565 (24%), Positives = 254/565 (44%), Gaps = 98/565 (17%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R  HG   ++   GC    S+ I   G+ G + EAR+VFD M  R+++AWNSMI  Y  N
Sbjct: 26  RHAHG---ELEVSGC----SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHN 78

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G+  +A R  Y                        DA+  G       +++G        
Sbjct: 79  GM-PDAARDLY------------------------DAISGGNMRTGAILLSG-------- 105

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVV 368
                 Y ++G + +A  VF  M+ER+ V WN +I+ YVQ+G               DV 
Sbjct: 106 ------YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVS 159

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
             +S++  Y    ++ +A+ +F  +  R++V W  +++ Y  +   G+A  +F +M  EG
Sbjct: 160 SWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREG 219

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN-SCGNEA 487
           + P+  ++ S +      G ++  + + +     G + +++  T +++  +++ S  + A
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 488 ILFFQEMLETGIKPSTTTITCALS--------------------ACTDVASLRNGRAIHG 527
           I FF+ M+E   + + +T+  ALS                    AC    +L  G A  G
Sbjct: 280 IKFFESMIERN-EYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACR--TALITGLAQCG 336

Query: 528 YLIRHDLC---LPTPIVTS---LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
            +    +    +P PIV S   L+  Y + G +++AK +FD  P +    +  MI+GYA 
Sbjct: 337 RIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQ 396

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           +G + EAL L + L + G+ P   + T+I  ACS+   +  G ++        +V     
Sbjct: 397 NGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAV---KVGCQFN 453

Query: 642 HFGC--VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
            F C  ++ +  +C N++ A R + +     D     S L+  V+++  + A    +++L
Sbjct: 454 SFACNALITMYGKCRNMEYA-RQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNML 512

Query: 700 QLEPDNPGNYVALSNAYAASGRWNE 724
                +  ++  + +AYA + + NE
Sbjct: 513 S---RDDVSWTTIISAYAHAEQSNE 534



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 178/390 (45%), Gaps = 58/390 (14%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  Y +   ++ A  LF ++  +N  SWA +I    + G SE+AL    E+   G+ P 
Sbjct: 359 LITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPS 418

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
              L ++  AC  +  +  G  VH   +KVG     F  ++LI MYGKC ++E AR+VF 
Sbjct: 419 LSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFS 478

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M+ +++V+WNS +   VQN L +EA   F  M    +    VS T+I+SA A+ +  +E
Sbjct: 479 RMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNE 534

Query: 302 -----------------------------------GKQAHAVAVINGMELDNVLGSSIIN 326
                                              G+Q H VA+  GM+ + ++ +++I+
Sbjct: 535 AMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALIS 594

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNA 386
            Y K G   D+  +F  M ERDI TWN +I  Y Q G     +    + MY   E     
Sbjct: 595 MYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHG-----LGREAIKMYQHME----- 643

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLR 445
               ++ +L + V +  LL A +  G   E  + F  M Q  G++P    +  ++    R
Sbjct: 644 ----SAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGR 699

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            G +  A+     M    ++P+ + W+ L+
Sbjct: 700 TGDVQGAEQFIYDMP---IEPDTVIWSALL 726



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 163/346 (47%), Gaps = 36/346 (10%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+  ++  +  EA+ LL E+              +   C     + TG Q+H+  
Sbjct: 386 SWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLA 445

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K G  F  N +    L+  Y KC  ++ A ++F R+  K++ SW + +    +  L ++
Sbjct: 446 VKVGCQF--NSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDE 503

Query: 166 ALIGFVEM-QEDGVS------------------------------PDNFVLPNVLKACGA 194
           A   F  M   D VS                              P++ +L  +L  CG+
Sbjct: 504 ARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGS 563

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           LG    G+ +H   +K+G D  + VA++LI MY KCG   ++R++FD M  R++  WN++
Sbjct: 564 LGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTI 622

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG-KQAHAVAVING 313
           I GY Q+GL  EAI+++  M   GV P  V+   +L+A ++   +DEG K   +++   G
Sbjct: 623 ITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYG 682

Query: 314 MELDNVLGSSIINFYSKVGLLEDAE-VVFSRMVERDIVTWNLLIAS 358
           +       + +++   + G ++ AE  ++   +E D V W+ L+ +
Sbjct: 683 LTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGA 728


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/586 (33%), Positives = 306/586 (52%), Gaps = 36/586 (6%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW--NSMIVGYVQN 261
           +H  +LK G       AS L+  Y     L  +R VF      +   +  N+++  Y  N
Sbjct: 43  LHAQLLKHGLHLDPVAASKLLSSYALHRRLPASRGVFASFPNPHATTFLPNTLLRAYALN 102

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVT-SILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            L  EA+ VF  M      P R S T S L  + +   +   +  H+  V  G   D  +
Sbjct: 103 ALPREAVAVFSAM------PHRDSFTYSFLIKALSSAGVAPLRAVHSHVVKLGSIEDTYV 156

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G+++I+ YSK G   DA  VF  M  RD+V+WN  +A+ V+ G+                
Sbjct: 157 GNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGE---------------- 200

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             ++ A+++F+ ++ +D V WNTLL  Y   G   EA +LF  M       N++SW++V+
Sbjct: 201 --VEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMP----ERNVVSWSTVV 254

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
            G+ + G M  A+ +F +M +     NL+TWT ++S   QN    EA   F +M E  ++
Sbjct: 255 SGYCKKGDMEMARVIFDKMPT----KNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVE 310

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
                +   L+AC +  SL  G+ IH Y+    L   T +  +L+DM+ KCG I++A  V
Sbjct: 311 LDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYV 370

Query: 561 FDIS-PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           FD     K+   +N +I G+AMHG   +AL  F  ++ +G  PD++T  N+L+AC+H G 
Sbjct: 371 FDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGF 430

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           V EG   F  M  D+ V P +EH+GC+++LL R G + EA+ +I +MP DP+  I GSLL
Sbjct: 431 VEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLL 490

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           S C      E AE     L +L+P N GNY  LS+ YA +G+W+++++ R  MK  G +K
Sbjct: 491 SACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQK 550

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           + G SWI++ E  H F   DR HP +++I   +  L  H + V  V
Sbjct: 551 SSGSSWIELDEAFHEFTVGDRKHPDSDQISEMVDRLSSHAKDVDCV 596



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 176/366 (48%), Gaps = 39/366 (10%)

Query: 22  PLKLSQTHLTKLRESDNSY--ESLYKSY-----FHQISSLSKEKQIREAVDLLTEMKC-- 72
           PL+   +H+ KL   +++Y   +L  +Y     F   S + +E   R+ V   + M    
Sbjct: 137 PLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMV 196

Query: 73  RNFQI--GPEIYGELLQGCVYKRDMYTGQQIHARILKNGD----------FFARNEYVET 120
           R  ++     ++ E+L+     +D  +   +     K GD             RN    +
Sbjct: 197 RQGEVEGARRMFDEMLE-----KDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWS 251

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            +V  Y K   +++A  +F ++  KN+ +W  ++    + GL E+A   F +M+E  V  
Sbjct: 252 TVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVEL 311

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D   + ++L AC   G +  G+ +H YV          V ++LIDM+ KCG +  A  VF
Sbjct: 312 DVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVF 371

Query: 241 DG-MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           D  ++ ++ V+WN++I G+  +G  ++A+  F +M L+G  P  V++ ++LSA  ++  +
Sbjct: 372 DTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFV 431

Query: 300 DEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDA-EVVFSRMVERDIVTW 352
           +EG++  A      ME D  +   I      I+   + GL+++A +++ S   + + V W
Sbjct: 432 EEGRRYFA-----NMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIW 486

Query: 353 NLLIAS 358
             L+++
Sbjct: 487 GSLLSA 492


>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
 gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
          Length = 603

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 309/563 (54%), Gaps = 37/563 (6%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L+  Y +CG + EAR++FD M  R+VV+WN+MI GY+ NG+ + A  +F       V 
Sbjct: 59  AALLTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLF------DVM 112

Query: 281 PTR--VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           P R  VS   ++S       + E ++    A      + N L    ++ Y++ G L+DAE
Sbjct: 113 PARNDVSWLMMISGYMKRKRVREAREIFDRAPSPTTSVCNAL----LSGYAEHGYLKDAE 168

Query: 339 VVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKCERIDN 385
            +F RM   D+V+WN +I  Y ++G             + D V  ++IV  Y +   +D 
Sbjct: 169 DLFGRMQTPDLVSWNAMITGYTRAGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDA 228

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A +VF  +  RDV+ WNT+++ +    R  +A RLF  M       +++SWN+++ G+++
Sbjct: 229 AWKVFQDMPDRDVLAWNTMMSGFVVSERLDDALRLFADMP----DRDLVSWNTILQGYVQ 284

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
            G M+ A   F +M     + +  +W TLISG         A+    EM + G +P   T
Sbjct: 285 QGDMDGATAWFRKMP----EKDEASWNTLISGYKDEG----ALNLLSEMTQGGYRPDQAT 336

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
            + A+S C+ +A+L  GR +H   I+        +++SL+ MY+KCG I +A +VFD+  
Sbjct: 337 WSVAISICSSLAALGCGRMVHVCTIKTGFERDALVMSSLISMYSKCGLITEASQVFDLIV 396

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            ++   +NAMI+ YA HGLA EAL LF  + + G  PD  TF ++L+AC+H G + EG  
Sbjct: 397 QRDTVTWNAMIATYAYHGLAAEALTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEGCH 456

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
            F  M  D  + P  +H+ C+V+LL R G + +A      +P D   +   +L S+C   
Sbjct: 457 HFRSMQQDWNLIPRSDHYSCMVDLLGRSGFVHQAYNFTRRIPSDLQINAWETLFSSCNAH 516

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
            + +L E +++++LQ  P + G Y  LSN YAA G W+  + VR +MKE+GL+K  GCSW
Sbjct: 517 GDIQLGELVAKNVLQSRPSDGGMYTLLSNIYAAKGMWSSAASVRGLMKEQGLKKETGCSW 576

Query: 746 IQIGEELHVFVACDRSHPKTEEI 768
           I++  ++  F + D++HP  E+I
Sbjct: 577 IELKGDVVSFSSNDKAHPLIEQI 599



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 206/453 (45%), Gaps = 83/453 (18%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           + G +  AR+VFD M  RNV  WN MI G V+NG+  +A  VF  M      P R SV+ 
Sbjct: 5   RAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTM------PFRNSVS- 57

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
                                            ++++  Y++ G + +A  +F RM +R 
Sbjct: 58  --------------------------------WAALLTGYARCGRVAEARELFDRMPDRS 85

Query: 349 IVTWNLLIASYVQSGQS-------DVVVASS------IVDMYAKCERIDNAKQVFNSIIL 395
           +V+WN +I+ Y+ +G         DV+ A +      ++  Y K +R+  A+++F+    
Sbjct: 86  VVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWLMMISGYMKRKRVREAREIFDRAPS 145

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
               + N LL+ YA+ G   +A  LF +MQ    +P+++SWN++I G+ R G M  A+ +
Sbjct: 146 PTTSVCNALLSGYAEHGYLKDAEDLFGRMQ----TPDLVSWNAMITGYTRAGMMQVAQRL 201

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +M     + + ++WT ++ G  QN   + A   FQ+M +  +    T ++        
Sbjct: 202 FDEMP----EKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVLAWNTMMSGF------ 251

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           V S R   A+  +    D  L +    +++  Y + G++  A   F   P K+   +N +
Sbjct: 252 VVSERLDDALRLFADMPDRDLVS--WNTILQGYVQQGDMDGATAWFRKMPEKDEASWNTL 309

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV-----GM 630
           ISGY   G    AL L   + Q G  PD  T++  ++ CS    +  G  + V     G 
Sbjct: 310 ISGYKDEG----ALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCTIKTGF 365

Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
             D  V  S+      +++ S+CG + EA +V 
Sbjct: 366 ERDALVMSSL------ISMYSKCGLITEASQVF 392



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 129/517 (24%), Positives = 209/517 (40%), Gaps = 99/517 (19%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN      L+  YA+C  +  A  LF R+  ++V SW A+I      G+ ++A   F   
Sbjct: 53  RNSVSWAALLTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLF--- 109

Query: 174 QEDGVSPDNFVLPNVLKACGALGWV----GFGRAVHGYVLKVGFDGC----VFVASSLID 225
                        +V+ A   + W+    G+ +       +  FD        V ++L+ 
Sbjct: 110 -------------DVMPARNDVSWLMMISGYMKRKRVREAREIFDRAPSPTTSVCNALLS 156

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
            Y + G L++A  +F  M   ++V+WN+MI GY + G+ + A R+F EM     E   VS
Sbjct: 157 GYAEHGYLKDAEDLFGRMQTPDLVSWNAMITGYTRAGMMQVAQRLFDEMP----EKDTVS 212

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRM 344
            T+I+        L  G    A  V   M   +VL  +++++ +     L+DA  +F+ M
Sbjct: 213 WTAIVRGY-----LQNGDVDAAWKVFQDMPDRDVLAWNTMMSGFVVSERLDDALRLFADM 267

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
            +RD+V+WN ++  YVQ G                   +D A   F  +  +D   WNTL
Sbjct: 268 PDRDLVSWNTILQGYVQQGD------------------MDGATAWFRKMPEKDEASWNTL 309

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI---------------------LGF 443
           ++ Y D G    A  L  +M   G  P+  +W+  I                      GF
Sbjct: 310 ISGYKDEG----ALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCTIKTGF 365

Query: 444 LRN--------------GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
            R+              G + EA  +F     L VQ + +TW  +I+    +    EA+ 
Sbjct: 366 ERDALVMSSLISMYSKCGLITEASQVF----DLIVQRDTVTWNAMIATYAYHGLAAEALT 421

Query: 490 FFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL--PTPIVTSLVDM 547
            F  M + G  P   T    LSAC     L  G   H   ++ D  L   +   + +VD+
Sbjct: 422 LFDRMTKDGFSPDHATFLSVLSACAHKGYLYEG-CHHFRSMQQDWNLIPRSDHYSCMVDL 480

Query: 548 YAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMHG 583
             + G +HQA       PS  ++  +  + S    HG
Sbjct: 481 LGRSGFVHQAYNFTRRIPSDLQINAWETLFSSCNAHG 517



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           A++LL+EM    ++     +   +  C     +  G+ +H   +K G  F R+  V + L
Sbjct: 318 ALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCTIKTG--FERDALVMSSL 375

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  Y+KC  +  AS++F  +  ++  +W A+I      GL+ +AL  F  M +DG SPD+
Sbjct: 376 ISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALTLFDRMTKDGFSPDH 435

Query: 183 FVLPNVLKACGALGWV 198
               +VL AC   G++
Sbjct: 436 ATFLSVLSACAHKGYL 451


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/600 (32%), Positives = 330/600 (55%), Gaps = 40/600 (6%)

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
           P++++      +  F R  H   +K+     V+  +  I    + G++  AR+VFD M  
Sbjct: 16  PSIIRTIFLPIFHSFNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPH 75

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR--VSVTSILSASANLDALDEGK 303
           R+ V+WNS+I GY +NG  +E+ R+F      G+ PT+  VS  S+++     + +DE  
Sbjct: 76  RDTVSWNSIITGYWKNGCFDESKRLF------GLMPTKNVVSWNSMIAGCIEDERIDEAW 129

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
           Q             N + S ++  Y +V   E+A  +F  M  R+++++           
Sbjct: 130 QYFQAMPQRNTASWNAMISGLVR-YDRV---EEASRLFEEMPRRNVISY----------- 174

Query: 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
                  +++VD YAK   I+ A+ +FN +  ++VV W  +++ Y + G+  EA  LF Q
Sbjct: 175 -------TAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQ 227

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           M       NI++  ++I G+ + G+ ++AK +F Q+       +L +W  +I+G  QN  
Sbjct: 228 MP----DKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR----DLASWNAMITGYAQNGS 279

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
           G EA+    +ML+ G++P  +T+   L+AC+ +ASL+ GR  H  +++        I  +
Sbjct: 280 GEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNA 339

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+ MY KCG+I  ++  F      ++  +NAMI+ +A HG    ALA F  ++   ++PD
Sbjct: 340 LITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPD 399

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            ITF ++L+AC HAG V+E L  F  M   +++    EHF C+V++LSR G +++A ++I
Sbjct: 400 GITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKII 459

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             MP + D  I G+LL+ C      +L E  ++ +++LEP N G YV LSN YAA+G W 
Sbjct: 460 QEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWG 519

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVS 783
           EV++VR +M+E+G++K P  SW++I  ++H F+  D SHP+   I   L L GM +++++
Sbjct: 520 EVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPEIHRI--RLELKGMKLQMIA 577



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 131/253 (51%), Gaps = 30/253 (11%)

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
           D ++ ASRLF  +  +NV S+ A++    ++G  E+A   F                N +
Sbjct: 154 DRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALF----------------NCM 197

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGC-----------VFVASSLIDMYGKCGDLEEARK 238
                + W      + GYV    FD             +   +++I  Y K G  ++A+ 
Sbjct: 198 PQKNVVSWTVM---ISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKI 254

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +FD +  R++ +WN+MI GY QNG  EEA+++  +M   G++P   ++ S+L+A ++L +
Sbjct: 255 LFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLAS 314

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           L EG++ H + + +G E    + +++I  Y K G + D+E+ F ++   D+V+WN +IA+
Sbjct: 315 LQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAA 374

Query: 359 YVQSGQSDVVVAS 371
           + + G  D  +AS
Sbjct: 375 FARHGFYDRALAS 387



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 157/341 (46%), Gaps = 33/341 (9%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNF-----------QIGPEIYGELLQGCVYKRD 94
           S+   IS L +  ++ EA  L  EM  RN            +IG       L  C+ +++
Sbjct: 142 SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKN 201

Query: 95  MYTGQQIHARILKNGDFFARNEYVE----------TKLVVFYAKCDALDVASRLFCRLRV 144
           + +   + +  ++NG F       E          T ++  Y K    D A  LF ++  
Sbjct: 202 VVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPC 261

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +++ SW A+I    + G  E+AL    +M + G+ PD+  L +VL AC +L  +  GR  
Sbjct: 262 RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKT 321

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H  VLK G++  + + ++LI MY KCG + ++   F  +   +VV+WN+MI  + ++G  
Sbjct: 322 HVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFY 381

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL---- 320
           + A+  F EM    VEP  ++  S+LSA  +      GK   ++   N M     +    
Sbjct: 382 DRALASFGEMRSNRVEPDGITFLSLLSACGHA-----GKVHESLNWFNSMIXSYKIVXRP 436

Query: 321 --GSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
              + +++  S+ G +E A  +   M  E D   W  L+A+
Sbjct: 437 EHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAA 477


>gi|255586014|ref|XP_002533676.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526427|gb|EEF28706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 726

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 353/689 (51%), Gaps = 86/689 (12%)

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA 152
           +D+ T +QIHA +L +  F     +  TKL+ FY+K + L+ A  +F  L+  N  SW  
Sbjct: 39  KDLRTLKQIHASLLVSTGFNESISFPSTKLISFYSKFNDLESAISVFSLLQEPNTLSWNL 98

Query: 153 IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW-VGFGRAVHGYVLKV 211
           I+  +   GL  +AL+ + +M+E GV  D F  P + +A  +L   V  G+ VH   +K+
Sbjct: 99  IMRTHLDFGLVTEALLLYKKMRESGVKTDAFTFPTINRAVMSLKSDVLLGKMVHCDAMKL 158

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
           GF   ++  +++I++Y +CG +   R +FD M  R++V+W SMI GYV  G    A  +F
Sbjct: 159 GFGYDLYFCNTMIEVYARCGCVYYGRVMFDEMSPRDLVSWTSMISGYVSEGNVFSAFELF 218

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
            +M LE +EP  V++  +L      D   EG+Q H   + NG                  
Sbjct: 219 NKMRLE-MEPNSVTLIVMLKGCYAYDNFSEGRQLHCYIIKNG------------------ 259

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
                                 LLI   VQ+         SI+ MY+        + +F 
Sbjct: 260 ----------------------LLIYGSVQN---------SILRMYSITGSAKEVESLFV 288

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
            I  RDV+ WNTL+  YA  G + E    F QM+ E ++ +  +   VI  F + G + E
Sbjct: 289 EIYRRDVISWNTLIGFYALRGDAEEMVCGFNQMRGE-VALSSETLTLVISVFAKIGNLVE 347

Query: 452 AK-------------DMFL---------------QMQSLGVQP--NLITWTTLISGLTQN 481
            +             D+ L                +Q  G  P  +  TW  ++SG  QN
Sbjct: 348 GEKLHSFSIKVGLCDDVLLASLLDFYAKCGELRNSVQLFGEIPCRSSSTWKLMMSGCIQN 407

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL----P 537
              +EAI  F++M  +G++     +   + AC+ + SL+  + IHGYL R+   +     
Sbjct: 408 GYFDEAIHLFRQMQASGVQLQAQILGSLVDACSHLGSLQLCKEIHGYLTRNFFYILEGDN 467

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             + TS+++MY +CG+I  A+  F+   +K+   + +MI GY +HG+A+EAL LF  +  
Sbjct: 468 IHLGTSILNMYIRCGSISSAREYFNRMVAKDNITWTSMIEGYGIHGMAIEALKLFNQMLV 527

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
           + + P+ +TF ++L+ACSH+GL+ +G ELF+ M     ++P ++H+ C+V+LL RCG + 
Sbjct: 528 ERVLPNRVTFLSLLSACSHSGLIRQGCELFLSMKWVFGMEPDLDHYTCMVDLLGRCGKIK 587

Query: 658 EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
           EAL +I+ M    D+ I G+L+++C    + ++ E+ ++ LL++E DN G Y  LSN  A
Sbjct: 588 EALAMIIRMVVVADSRIWGALVASCRVHGDKKVGEFAAQRLLEMESDNVGYYTLLSNIQA 647

Query: 718 ASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
             G+W+EV QVR ++ EK LRK PG S I
Sbjct: 648 MVGKWDEVEQVRKVIHEKDLRKTPGWSCI 676



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 97/201 (48%), Gaps = 11/201 (5%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFF----ARNEY 117
           EA+ L  +M+    Q+  +I G L+  C +   +   ++IH  + +N  FF      N +
Sbjct: 412 EAIHLFRQMQASGVQLQAQILGSLVDACSHLGSLQLCKEIHGYLTRN--FFYILEGDNIH 469

Query: 118 VETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177
           + T ++  Y +C ++  A   F R+  K+  +W ++I      G++ +AL  F +M  + 
Sbjct: 470 LGTSILNMYIRCGSISSAREYFNRMVAKDNITWTSMIEGYGIHGMAIEALKLFNQMLVER 529

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFVASSLIDMYGKCGDLEEA 236
           V P+     ++L AC   G +  G  +   +  V G +  +   + ++D+ G+CG ++EA
Sbjct: 530 VLPNRVTFLSLLSACSHSGLIRQGCELFLSMKWVFGMEPDLDHYTCMVDLLGRCGKIKEA 589

Query: 237 RKVFDGMIARNVVAWNSMIVG 257
                 MI R VV  +S I G
Sbjct: 590 L----AMIIRMVVVADSRIWG 606


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/585 (33%), Positives = 307/585 (52%), Gaps = 35/585 (5%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-----NVVAWNSMIVGY 258
           +H  VL+ G       AS LI  Y     +   R VF    A        +  N+++  Y
Sbjct: 123 LHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSAAAAPPFAPSTALLANTLLRAY 182

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             N L   A+ VF +M L   +    S      A+A +  +   + AH      G   D 
Sbjct: 183 ALNSLPHAALAVFVDMPLRQRDTFTYSFLIKALATAGVTPV---RAAHTHVFKLGSVEDT 239

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
            +G+++I+ YSK   L DA+ VF  M  RD+V+WN  +A+ V+ G+              
Sbjct: 240 FVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGE-------------- 285

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
               +D A+ +F+ +  +D V WNT+L  YA  G + EA  LF +M       N++SW++
Sbjct: 286 ----VDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMP----GRNVVSWST 337

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           V+  + + G M  A+ +F +M +     NL+TWT ++S   Q     EA   F EM E  
Sbjct: 338 VVSAYCKKGDMEMARVIFDKMPA----KNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAA 393

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           I+     +   L+AC +   L  G+ IH ++ +  L   T +  +L+DM+ KCG +++A 
Sbjct: 394 IELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRAD 453

Query: 559 RVFDIS-PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
            +FD     K+   +N +I G+AMHG   +AL LF  ++Q+G  PD++T  N+L+AC+H 
Sbjct: 454 YIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHM 513

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           GLV EG   F  M +D+ +KP +EH+GC+V+LL R G + EA+ +I +MP +P+  I GS
Sbjct: 514 GLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGS 573

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           LLS C      E AE  +  L  L+P N GNY  LSN YA +G+W+++++ R  MK  G 
Sbjct: 574 LLSACRLHKNVEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGS 633

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
           +K  G SWI++ E  H F   DR HP++++I   +  L  HV+ V
Sbjct: 634 QKTAGSSWIELDEAFHEFTVGDRKHPESDQISDMIDRLSSHVKCV 678



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 208/478 (43%), Gaps = 83/478 (17%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG--- 155
           Q++HA++L+ G    R+    +KL+  YA    +     +F            A++    
Sbjct: 121 QELHAQVLRQG--LHRDPRAASKLIASYALLRRVPACRCVFSAAAAPPFAPSTALLANTL 178

Query: 156 -----LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK 210
                LN    L   AL  FV+M       D F    ++KA    G V   RA H +V K
Sbjct: 179 LRAYALN---SLPHAALAVFVDMPLR--QRDTFTYSFLIKALATAG-VTPVRAAHTHVFK 232

Query: 211 VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270
           +G     FV ++LID Y K   L +A+KVFD M  R+VV+WN+ +   V+ G  + A  +
Sbjct: 233 LGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSM 292

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYS 329
           F EM     E   VS  ++L   A       G+   A  +   M   NV+  S++++ Y 
Sbjct: 293 FDEMP----EKDTVSWNTMLDGYAK-----AGEAEEAFELFQRMPGRNVVSWSTVVSAYC 343

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVV---- 368
           K G +E A V+F +M  +++VTW +++++  Q G                 + DVV    
Sbjct: 344 KKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVS 403

Query: 369 -------------------------------VASSIVDMYAKCERIDNAKQVFNS-IILR 396
                                          V ++++DM+ KC  ++ A  +F++ I+ +
Sbjct: 404 ILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEK 463

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           D V WN ++  +A  G   +A  LF QM+ +G  P+ ++  +V+      G + E +  F
Sbjct: 464 DSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFF 523

Query: 457 LQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
             M++  G++P +  +  ++  L +     EA+   + M     +P+       LSAC
Sbjct: 524 ANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSM---PWEPNEVIWGSLLSAC 578



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 17/214 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+ +++  + EA  L TEMK    ++       +L  C     +  G++IH  + +   
Sbjct: 370 VSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRK- 428

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLF-CRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
              R+  V   L+  + KC  ++ A  +F   +  K+  SW  IIG     G  EKAL  
Sbjct: 429 -LGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNL 487

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-------HGYVLKVGFDGCVFVASS 222
           F +M++ G  PD   L NVL AC  +G V  GR         +G   ++   GC      
Sbjct: 488 FTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPEIEHYGC------ 541

Query: 223 LIDMYGKCGDLEEARKVFDGMI-ARNVVAWNSMI 255
           ++D+ G+ G ++EA  +   M    N V W S++
Sbjct: 542 MVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLL 575


>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
 gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 774

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 217/766 (28%), Positives = 375/766 (48%), Gaps = 93/766 (12%)

Query: 78  GPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASR 137
           G +    LL+    +R   +G+ IH  I++ G     + Y+  +L+  Y +C   D A +
Sbjct: 5   GNKYLASLLRCYRDERCKLSGKVIHGFIVRMG--MKSDTYLCNRLLDLYIECGDGDYARK 62

Query: 138 LFCRLRVKNVFSWAAIIGLNCRVG-------------------------------LSEKA 166
           +F  + V++V+SW A +   C+VG                                 EKA
Sbjct: 63  VFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKA 122

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
           L+ +  M  DG  P  F L +VL AC  +    FG   HG  +K G D  +FV ++L+ M
Sbjct: 123 LVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSM 182

Query: 227 YGKCGDL-EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           Y KCG + +   +VF+ +   N V++ ++I G  +     EA+++F  M  +GV+   V 
Sbjct: 183 YAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVC 242

Query: 286 VTSILSASA---NLDALDE------GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           +++ILS SA     D+L E      GKQ H +A+  G   D  L +S++  Y+K   +  
Sbjct: 243 LSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNG 302

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV--------------ASSIVDMYAKCER 382
           AE++F+ M E ++V+WN++I  + Q  +SD  V                + + +   C R
Sbjct: 303 AELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFR 362

Query: 383 ---IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              ++  +++F+SI    V  WN +L+ Y++     EA   F QMQ + + P+  + + +
Sbjct: 363 SGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVI 422

Query: 440 I-----LGFLRNGQM------------------------NEAKDMFLQ---MQSLGVQPN 467
           +     L FL  G+                         +E + M +          + +
Sbjct: 423 LSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELD 482

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIK-PSTTTITCALSACTDVASLRNGRAIH 526
           +  W ++ISG   N    +A++ F+ M +T +  P+ T+    LS+C+ + SL +GR  H
Sbjct: 483 IACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFH 542

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
           G +++      + + T+L DMY KCG I  A++ FD    K   ++N MI GY  +G   
Sbjct: 543 GLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGD 602

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
           EA+ L++ +   G  PD ITF ++L ACSH+GLV  GLE+   M   H ++P ++H+ C+
Sbjct: 603 EAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICI 662

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           V+ L R G L++A ++    P    + +   LLS+C    +  LA  ++E L++L+P + 
Sbjct: 663 VDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSS 722

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
             YV LSN Y++  +W++ + ++ +M +  + K PG SW   G +L
Sbjct: 723 AAYVLLSNTYSSLRQWDDSAALQGLMNKNRVHKTPGQSWTTYGNDL 768


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  340 bits (871), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 183/581 (31%), Positives = 315/581 (54%), Gaps = 29/581 (4%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           F  ++L+   G    L + R +FD M  ++ V++N MI  +  +GL   A R ++++   
Sbjct: 170 FSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLA-RHYFDLA-- 226

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
             E   VS   +L+A      + E ++       +  E D +  ++++  Y +   +E+A
Sbjct: 227 -PEKDAVSWNGMLAAYVRNGRIQEAREL----FDSRTEWDAISWNALMAGYVQRSQIEEA 281

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERID 384
           + +F++M +RD+V+WN +++ Y + G               DV   ++IV  YA+   ++
Sbjct: 282 QKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLE 341

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
            AK+VF+++  ++ V WN ++AAY       EA  LF  M       N+ SWN+++ G+ 
Sbjct: 342 EAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR----NVASWNTMLTGYA 397

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
           + G ++EA+ +F  M     Q + ++W  +++  +Q     E +  F+EM   G   + +
Sbjct: 398 QAGMLDEARAIFGMMP----QKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRS 453

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
              C LS C D+A+L  G  +H  LI+    +   +  +L+ MY KCG++ +A   F+  
Sbjct: 454 AFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEM 513

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
             +++  +N MI+GYA HG   EAL +F  +++    PD IT   +L ACSH+GLV +G+
Sbjct: 514 EERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGI 573

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
             F  M  D  V    EH+ C+++LL R G LDEA+ ++  MP +PD+ + G+LL     
Sbjct: 574 SYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRI 633

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
              +EL    +E + +LEP+N G YV LSN YA+SG+W +V ++R IM E+G++K PG S
Sbjct: 634 HRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFS 693

Query: 745 WIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           WI++  ++H F   D  HP+ E+IYA L  L + ++    V
Sbjct: 694 WIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYV 734



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 174/368 (47%), Gaps = 36/368 (9%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           +V  YA+   +  A RLF    +++VF+W AI+    + G+ E+A   F     D +   
Sbjct: 299 MVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVF-----DAMPDK 353

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG--CVFVAS--SLIDMYGKCGDLEEAR 237
           N V  N + A        + +       K  FD   C  VAS  +++  Y + G L+EAR
Sbjct: 354 NAVSWNAMMA-------AYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEAR 406

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
            +F  M  ++ V+W +M+  Y Q G +EE +++F EM   G    R +   +LS  A++ 
Sbjct: 407 AIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIA 466

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
           AL+ G Q H+  +  G  +   +G++++  Y K G +E+A   F  M ERD+V+WN +IA
Sbjct: 467 ALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIA 526

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
            Y + G     +           E  D  ++   S    D+ L   +LAA +  G   + 
Sbjct: 527 GYARHGFGKEAL-----------EVFDTMRKT--STKPDDITLVG-VLAACSHSGLVEKG 572

Query: 418 SRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI- 475
              FY M  + G++     +  +I    R G+++EA ++   M+ +  +P+   W  L+ 
Sbjct: 573 ISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNL---MKDMPFEPDSTMWGALLG 629

Query: 476 -SGLTQNS 482
            S + +NS
Sbjct: 630 ASRIHRNS 637



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 12/252 (4%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN      ++  YA+   LD A  +F  +  K+  SWAA++    ++G SE+ L  F EM
Sbjct: 384 RNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEM 443

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              G   +      VL  C  +  +  G  +H  ++K G+    FV ++L+ MY KCG +
Sbjct: 444 GRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSM 503

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           EEA   F+ M  R+VV+WN+MI GY ++G  +EA+ VF  M     +P  +++  +L+A 
Sbjct: 504 EEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAAC 563

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDAEVVFSRM-VE 346
           ++   +++G     ++    M  D  + +       +I+   + G L++A  +   M  E
Sbjct: 564 SHSGLVEKG-----ISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFE 618

Query: 347 RDIVTWNLLIAS 358
            D   W  L+ +
Sbjct: 619 PDSTMWGALLGA 630



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 176/376 (46%), Gaps = 39/376 (10%)

Query: 305 AHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
           A A A I G  +++ +  +  I  + + G + DAE +F+ M  R   T+N ++A Y  +G
Sbjct: 93  APADACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANG 152

Query: 364 -------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
                        + D    ++++        + + + +F+ + ++D V +N +++++A+
Sbjct: 153 RLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHAN 212

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
            G    A R ++ +  E    + +SWN ++  ++RNG++ EA+++F        + + I+
Sbjct: 213 HGLVSLA-RHYFDLAPE---KDAVSWNGMLAAYVRNGRIQEARELF----DSRTEWDAIS 264

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W  L++G  Q S   EA   F +M +  +  S  T+    +   D+A  R  R      I
Sbjct: 265 WNALMAGYVQRSQIEEAQKMFNKMPQRDVV-SWNTMVSGYARRGDMAEAR--RLFDVAPI 321

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           R D+   T IV+     YA+ G + +AKRVFD  P K    +NAM++ Y    +  EA  
Sbjct: 322 R-DVFTWTAIVSG----YAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKE 376

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF  +  + +     ++  +L   + AG+++E   +F  M     V      +  ++   
Sbjct: 377 LFDAMPCRNV----ASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVS-----WAAMLAAY 427

Query: 651 SRCGNLDEALRVILTM 666
           S+ G  +E L++   M
Sbjct: 428 SQIGFSEETLQLFKEM 443



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 146/320 (45%), Gaps = 37/320 (11%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VF  ++++  Y + G LEEA++VFD M  +N V+WN+M+  YVQ  + EEA  +F  M  
Sbjct: 324 VFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPC 383

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM--ELDNVLGSSIINFYSKVGLL 334
             V     S  ++L+  A    LDE +       I GM  + D V  ++++  YS++G  
Sbjct: 384 RNV----ASWNTMLTGYAQAGMLDEAR------AIFGMMPQKDAVSWAAMLAAYSQIGFS 433

Query: 335 EDAEVVFSRM------VER-----------DIVTWNL---LIASYVQSGQS-DVVVASSI 373
           E+   +F  M      V R           DI        L +  +++G      V +++
Sbjct: 434 EETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNAL 493

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           + MY KC  ++ A   F  +  RDVV WNT++A YA  G   EA  +F  M+     P+ 
Sbjct: 494 LAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDD 553

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
           I+   V+     +G + +    F  M +  GV      +T +I  L +    +EA+   +
Sbjct: 554 ITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMK 613

Query: 493 EMLETGIKPSTTTITCALSA 512
           +M     +P +T     L A
Sbjct: 614 DM---PFEPDSTMWGALLGA 630



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/329 (17%), Positives = 147/329 (44%), Gaps = 48/329 (14%)

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           +V+  +  +  + +  R+ +A+++F ++  R    +NT+LA YA  GR  +A   F  + 
Sbjct: 106 EVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP 165

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ------------------------- 460
                P+  S+N+++     +  + + + +F +M                          
Sbjct: 166 ----RPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARH 221

Query: 461 --SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
              L  + + ++W  +++   +N    EA    +E+ ++  +    +    ++     + 
Sbjct: 222 YFDLAPEKDAVSWNGMLAAYVRNGRIQEA----RELFDSRTEWDAISWNALMAGYVQRSQ 277

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           +   + +   + + D+        ++V  YA+ G++ +A+R+FD++P +++  + A++SG
Sbjct: 278 IEEAQKMFNKMPQRDVV----SWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSG 333

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           YA +G+  EA  +F  +     D +++++  ++ A     ++ E  ELF  M        
Sbjct: 334 YAQNGMLEEAKRVFDAMP----DKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR----- 384

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMP 667
           ++  +  ++   ++ G LDEA  +   MP
Sbjct: 385 NVASWNTMLTGYAQAGMLDEARAIFGMMP 413



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 14/236 (5%)

Query: 62  EAVDLLTEM-KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           E + L  EM +C  + +    +  +L  C     +  G Q+H+R++K G  +    +V  
Sbjct: 435 ETLQLFKEMGRCGEW-VNRSAFACVLSTCADIAALECGMQLHSRLIKAG--YGVGCFVGN 491

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            L+  Y KC +++ A   F  +  ++V SW  +I    R G  ++AL  F  M++    P
Sbjct: 492 ALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKP 551

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA----SSLIDMYGKCGDLEEA 236
           D+  L  VL AC   G V  G +   Y   +  D  V       + +ID+ G+ G L+EA
Sbjct: 552 DDITLVGVLAACSHSGLVEKGIS---YFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEA 608

Query: 237 RKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
             +   M    +   W +++ G  +   N E  R   E   E +EP    +  +LS
Sbjct: 609 VNLMKDMPFEPDSTMWGALL-GASRIHRNSELGRNAAEKIFE-LEPENAGMYVLLS 662


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  340 bits (871), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 200/661 (30%), Positives = 332/661 (50%), Gaps = 91/661 (13%)

Query: 201 GRAVHGYVLKVGF--DGCVF---VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
            R +H  +L +GF    C      AS L+++Y   G L+ A   F  +  + ++AWN+++
Sbjct: 46  ARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAIL 105

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            G V  G   +AI  ++ M   GV P   +   +L A ++L AL  G+  H    ++G  
Sbjct: 106 RGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHET--MHGKT 163

Query: 316 LDNV-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ---------- 364
             NV +  ++I+ ++K G +EDA  +F  M +RD+ +W  LI   + +G+          
Sbjct: 164 KANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRK 223

Query: 365 ------------------------------------------SDVVVASSIVDMYAKCER 382
                                                     SD+ V+++++DMY KC  
Sbjct: 224 MRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGD 283

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG 442
              A +VF+ ++  DVV W+TL+A Y+      E+ +L+  M   G++ N I   SV+  
Sbjct: 284 PLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPA 343

Query: 443 FLRNGQMNEAKDM--FLQMQSL-----------------------------GVQPNLITW 471
             +   + + K+M  F+  + L                                 +++ W
Sbjct: 344 LGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVW 403

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
            ++I G         A   F+ +     +P+  T+   L  CT + +LR G+ IHGY+ +
Sbjct: 404 NSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTK 463

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
             L L   +  SL+DMY+KCG +   ++VF     + +  YN MIS    HG   + LA 
Sbjct: 464 SGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAF 523

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           ++ ++++G  P+ +TF ++L+ACSHAGL++ G  L+  M +D+ ++P+MEH+ C+V+L+ 
Sbjct: 524 YEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIG 583

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G+LD A + I  MP  PDA++ GSLL  C   N+ EL E ++E +LQL+ D+ G+YV 
Sbjct: 584 RAGDLDGAYKFITRMPMTPDANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVL 643

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
           LSN YA+  RW ++S+VR ++K+KGL K PG SWIQ+G  ++VF A    HP   +I  T
Sbjct: 644 LSNLYASGKRWEDMSKVRSMIKDKGLEKKPGSSWIQVGHCIYVFHATSAFHPAFAKIEET 703

Query: 772 L 772
           L
Sbjct: 704 L 704


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  340 bits (871), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 214/727 (29%), Positives = 361/727 (49%), Gaps = 124/727 (17%)

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
            +A+  +  M   GV PDNF  P VLKA   +  +  G+ +H +V K G      V +SL
Sbjct: 67  HQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSL 126

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           ++MYGKCGD++ AR+VFD +  R+ V+WNSMI    +    E A+ +F  M LE V PT 
Sbjct: 127 VNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTS 186

Query: 284 VSVTSILSASANL-DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
            ++ S+  A +NL + L  GKQ HA  + NG +      ++++  Y+K+G + +A+ +F 
Sbjct: 187 FTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFD 245

Query: 343 RMVERDIVTWNLLIAS----------------YVQSG----------------------- 363
              ++D+V+WN +I+S                 +QSG                       
Sbjct: 246 VFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGC 305

Query: 364 ----------QSDVV----VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                      +D++    V  ++VDMY  C++ +  + VF+ +  R + +WN ++A Y 
Sbjct: 306 GKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYV 365

Query: 410 DLGRSGEASRLFYQMQLE-GISPNIISWNSVI---------------------LGFLRNG 447
                 EA  LF +M  E G+SPN ++ +SV+                      GF ++ 
Sbjct: 366 RNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDK 425

Query: 448 QMNEA-KDMFLQMQSLGV---------QPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
            +  A  DM+ +M  + +         + ++++W T+I+G       ++A+    +M   
Sbjct: 426 YVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRG 485

Query: 498 G------------------IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
                              +KP++ T+   L  C  +A+L  G+ IH Y ++  L     
Sbjct: 486 QAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVA 545

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           + ++LVDMYAKCG ++ ++ VF+    + +  +N +I  Y MHG   EAL LF+ + ++G
Sbjct: 546 VGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEG 605

Query: 600 -----IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
                I P+ +T+  I  + SH+G+V+EGL LF  M + H ++P+ +H+ C+V+LL R G
Sbjct: 606 DNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSG 665

Query: 655 NLDEALRVILTMPCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
            ++EA  +I TMP +        SLL  C      E+ E  +++L  L+P    N +   
Sbjct: 666 QIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDP----NVLDYG 721

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
              +  GR          MKEKG+RK PGCSWI+ G+E+H F+A D SHP+++E++  L 
Sbjct: 722 TKQSMLGR---------KMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLE 772

Query: 774 LLGMHVR 780
            L + ++
Sbjct: 773 TLSLRMK 779



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 159/327 (48%), Gaps = 35/327 (10%)

Query: 62  EAVDLLTEMKCRNFQIG--PE--IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEY 117
           EA++L  EM    F++G  P       +L  CV        + IH+ ++K G  F +++Y
Sbjct: 372 EAIELFVEMV---FELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWG--FEKDKY 426

Query: 118 VETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ--- 174
           V+  L+  Y++   +++A  +F  +  K++ SW  +I      G  + AL    +MQ   
Sbjct: 427 VQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQ 486

Query: 175 -----------EDG----VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
                      ED     + P++  L  VL  C AL  +G G+ +H Y +K      V V
Sbjct: 487 AEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAV 546

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG- 278
            S+L+DMY KCG L  +R VF+ M  RNV+ WN +I+ Y  +G  EEA+++F  M  EG 
Sbjct: 547 GSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGD 606

Query: 279 ----VEPTRVSVTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGL 333
               + P  V+  +I ++ ++   +DEG    + +   +G+E  +   + +++   + G 
Sbjct: 607 NNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQ 666

Query: 334 LEDAEVVFSRMVE--RDIVTWNLLIAS 358
           +E+A  +   M    + +  W+ L+ +
Sbjct: 667 IEEAYNLIKTMPSNMKKVDAWSSLLGA 693


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 196/632 (31%), Positives = 333/632 (52%), Gaps = 58/632 (9%)

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
            +P+ F+  N++ A   LG + + R V   + +       F  ++++  Y K GDL   +
Sbjct: 36  TNPETFLYNNLINAYSKLGNITYARHVFDKMPQPN----SFSWNTMLSAYSKSGDLSTMQ 91

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV-EPTRVSVTSILSASANL 296
           ++F  M  R+ V+WNS+I GYV  G   EA++ +  M  +GV    R++ +++L   ++ 
Sbjct: 92  EIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQ 151

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
             +D G+Q H   V  G      +GSS+++ Y+K+GL+  A  VF  + ER++V +N +I
Sbjct: 152 GCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMI 211

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
              ++SG                   + ++K++F+ +  RD + W T++      G   E
Sbjct: 212 TGLLRSGM------------------VKDSKRLFHGMKERDSISWTTMITGLIQNGLEAE 253

Query: 417 ASRLFYQMQLEGISPNIISWNSVIL--GFLRNGQMNEAK--------------------- 453
           A  LF  M+ EG++ +  ++ SV+   G LR   + E K                     
Sbjct: 254 AMDLFRDMRQEGMAMDQYTFGSVLTACGGLR--ALKEGKEIHTLIIRSGYNHNVFVGSAL 311

Query: 454 -DMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            DM+ + +S+             N+++WT ++ G  QN    EA+  F +M   GI+P  
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDD 371

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            T+   +S+C ++ASL  G   H   +   L     +  +L+ +Y KCG+I  + ++FD 
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDE 431

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
              ++   + A++SGYA  G A E + LF+ +  +G+ PD++TF  +L+ACS AGLV  G
Sbjct: 432 MSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERG 491

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
            + F  M  DH + P  +H+ C+++L  R G L+EA   I  MP  PD+    +LLS+C 
Sbjct: 492 QQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCR 551

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
                E+ ++ +E LL+L+P NP  Y+ LS+ YAA G+W+ V+Q+R  M+EKG RK PG 
Sbjct: 552 LYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGF 611

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           SWI+   ++++F A D+S P +++IYA L  L
Sbjct: 612 SWIKYKSKVYIFSADDQSSPFSDQIYAELEKL 643



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 150/480 (31%), Positives = 243/480 (50%), Gaps = 75/480 (15%)

Query: 87  QGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN 146
           QGCV   D+  G+QIH +I+K G  F    +V + LV  YAK   + VAS++F  ++ +N
Sbjct: 151 QGCV---DL--GRQIHGQIVKFG--FGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERN 203

Query: 147 V-------------------------------FSWAAIIGLNCRVGLSEKALIGFVEMQE 175
           V                                SW  +I    + GL  +A+  F +M++
Sbjct: 204 VVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQ 263

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
           +G++ D +   +VL ACG L  +  G+ +H  +++ G++  VFV S+L+DMY KC  +  
Sbjct: 264 EGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRY 323

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A  VF  M  +NVV+W +M+VGY QNG +EEA+RVF +M   G+EP   ++ S++S+ AN
Sbjct: 324 AEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCAN 383

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L +L+EG Q H  A+++G+     + +++I  Y K G +ED+  +F  M  RD V+W  L
Sbjct: 384 LASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTAL 443

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
           ++ Y Q G+++              E ID  +++    +  D V +  +L+A +  G   
Sbjct: 444 VSGYAQFGKAN--------------ETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVE 489

Query: 416 EASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
              + F  M +  GI P    +  +I  F R G++ EAK+   +M      P+ I W TL
Sbjct: 490 RGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMP---FSPDSIGWATL 546

Query: 475 ISGLTQNSC---GNEAILFF--QEMLETGIKPST-------TTITCALSACTDVASLRNG 522
           +S     SC   GNE I  +  + +LE  + P         ++I  A    ++VA LR G
Sbjct: 547 LS-----SCRLYGNEEIGKWAAESLLE--LDPQNPAGYILLSSIYAAKGKWSNVAQLRRG 599



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/546 (23%), Positives = 238/546 (43%), Gaps = 90/546 (16%)

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ 174
           N +    ++  Y+K   L     +F  +  ++  SW ++I      G   +A+  +  M 
Sbjct: 70  NSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMM 129

Query: 175 EDGV-SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           +DGV + +      +L    + G V  GR +HG ++K GF   VFV SSL+DMY K G +
Sbjct: 130 KDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLV 189

Query: 234 EEARKVFD-------------------------------GMIARNVVAWNSMIVGYVQNG 262
             A +VFD                               GM  R+ ++W +MI G +QNG
Sbjct: 190 SVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNG 249

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
           L  EA+ +F +M  EG+   + +  S+L+A   L AL EGK+ H + + +G   +  +GS
Sbjct: 250 LEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGS 309

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD---------------- 366
           ++++ Y K   +  AE VF RM  +++V+W  ++  Y Q+G S+                
Sbjct: 310 ALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEP 369

Query: 367 ------------------------------------VVVASSIVDMYAKCERIDNAKQVF 390
                                               + V+++++ +Y KC  I+++ Q+F
Sbjct: 370 DDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLF 429

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
           + +  RD V W  L++ YA  G++ E   LF +M ++G+ P+ +++ +V+    R G + 
Sbjct: 430 DEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVE 489

Query: 451 EAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
             +  F  M +  G+ P    +T +I    +     EA  F  +M      P +      
Sbjct: 490 RGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKM---PFSPDSIGWATL 546

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTP--IVTSLVDMYAKCGNIHQAKRVFDISPSK 567
           LS+C    +   G+     L+  D   P    +++S+     K  N+ Q +R      ++
Sbjct: 547 LSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGAR 606

Query: 568 ELPVYN 573
           + P ++
Sbjct: 607 KEPGFS 612



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 176/324 (54%), Gaps = 4/324 (1%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+ L +     EA+DL  +M+     +    +G +L  C   R +  G++IH  I
Sbjct: 237 SWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLI 296

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +++G  +  N +V + LV  Y KC ++  A  +F R+  KNV SW A++    + G SE+
Sbjct: 297 IRSG--YNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEE 354

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  F +MQ +G+ PD+F L +V+ +C  L  +  G   H   L  G    + V+++LI 
Sbjct: 355 AVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALIT 414

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +YGKCG +E++ ++FD M  R+ V+W +++ GY Q G   E I +F  M ++G++P  V+
Sbjct: 415 LYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVT 474

Query: 286 VTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
             ++LSA +    ++ G+Q   ++   +G+   +   + +I+ + + G LE+A+   ++M
Sbjct: 475 FIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKM 534

Query: 345 -VERDIVTWNLLIASYVQSGQSDV 367
               D + W  L++S    G  ++
Sbjct: 535 PFSPDSIGWATLLSSCRLYGNEEI 558



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 32/146 (21%)

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD---------- 562
           C +  +    + +H  +I+      T +  +L++ Y+K GNI  A+ VFD          
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 563 ---------------------ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI- 600
                                I P+++   +N++ISGY  +G  VEA+  + ++ + G+ 
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 601 DPDSITFTNILNACSHAGLVNEGLEL 626
           + + ITF+ +L   S  G V+ G ++
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQI 160


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 187/547 (34%), Positives = 287/547 (52%), Gaps = 84/547 (15%)

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
           EARK+FD M   N ++WN ++ GYVQNG+                         I  A  
Sbjct: 12  EARKLFDKMPETNTISWNGLVSGYVQNGM-------------------------ISEARK 46

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
             D + E       A+I G              Y + GL+E+AE++F RM ER++V+W +
Sbjct: 47  VFDKMPERNVVSWTAMIRG--------------YVQEGLIEEAELLFWRMPERNVVSWTV 92

Query: 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
           ++   ++ G                  R+D A+Q+F+ + ++DVV    ++      GR 
Sbjct: 93  MLGGLIEDG------------------RVDEARQLFDMMPVKDVVASTNMIDGLCSEGRL 134

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
            EA  +F +M       N+++W S+I G   +G                      TW+T+
Sbjct: 135 IEAREIFDEMP----QRNVVAWTSMISGEKDDG----------------------TWSTM 168

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           I    +     EA+  F  M   G++PS  ++   LS C  +ASL +GR +H  L+R   
Sbjct: 169 IKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQF 228

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
            +   + + L+ MY KCG++  AKRVFD   SK++ ++N++I+GYA HG   +AL +F +
Sbjct: 229 DIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHD 288

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           +    I PD ITF  +L+ACS+ G V EGLE+F  M S +QV P  EH+ C+V+LL R G
Sbjct: 289 MFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAG 348

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L+EA+ +I  MP + DA + G+LL  C      +LAE  ++ LLQLEP+N G Y+ LSN
Sbjct: 349 KLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSN 408

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV-ACDRSHPKTEEIYATLA 773
            Y++  RW +V ++R  M+ K LRK+PGCSWI++ +++H+F      SHP+ E I   L 
Sbjct: 409 LYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLG 468

Query: 774 LLGMHVR 780
            LG  +R
Sbjct: 469 KLGALLR 475



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 177/372 (47%), Gaps = 47/372 (12%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           LV  Y +   +  A ++F ++  +NV SW A+I    + GL E+A + F  M E  V   
Sbjct: 31  LVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSW 90

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC----VFVASSLIDMYGKCGDLEEAR 237
             +L  +++          GR      L   FD      V  ++++ID     G L EAR
Sbjct: 91  TVMLGGLIED---------GRVDEARQL---FDMMPVKDVVASTNMIDGLCSEGRLIEAR 138

Query: 238 KVFDGMIARNVVAWNSMIVG-------------YVQNGLNEEAIRVFYEMTLEGVEPTRV 284
           ++FD M  RNVVAW SMI G             Y + G   EA+ +F  M  EGV P+  
Sbjct: 139 EIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFP 198

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           SV S+LS   +L +LD G+Q H+  V +  ++D  + S +I  Y K G L  A+ VF R 
Sbjct: 199 SVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRF 258

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
             +DIV WN +IA Y Q G  +              + ++    +F+S I  D + +  +
Sbjct: 259 SSKDIVMWNSIIAGYAQHGFGE--------------KALEVFHDMFSSSIAPDEITFIGV 304

Query: 405 LAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           L+A +  G+  E   +F  M+ +  + P    +  ++    R G++NEA ++   ++++ 
Sbjct: 305 LSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNL---IENMP 361

Query: 464 VQPNLITWTTLI 475
           V+ + I W  L+
Sbjct: 362 VEADAIVWGALL 373



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 120/217 (55%), Gaps = 4/217 (1%)

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           K+  +W+ +I +  R G   +AL  F  MQ +GV P    + +VL  CG+L  +  GR V
Sbjct: 160 KDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQV 219

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H  +++  FD  ++V+S LI MY KCGDL  A++VFD   ++++V WNS+I GY Q+G  
Sbjct: 220 HSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFG 279

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG--S 322
           E+A+ VF++M    + P  ++   +LSA +    + EG +    ++ +  ++D      +
Sbjct: 280 EKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFE-SMKSKYQVDPKTEHYA 338

Query: 323 SIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
            +++   + G L +A  +   M VE D + W  L+ +
Sbjct: 339 CMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGA 375



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 181/384 (47%), Gaps = 26/384 (6%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           + L+  Y + G + EARKVFD M  RNVV+W +MI GYVQ GL EEA  +F+ M    V 
Sbjct: 29  NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNV- 87

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
              VS T +L        +DE +Q   +  +     D V  +++I+     G L +A  +
Sbjct: 88  ---VSWTVMLGGLIEDGRVDEARQLFDMMPVK----DVVASTNMIDGLCSEGRLIEAREI 140

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  M +R++V W  +I     SG+ D    S+++ +Y +      A  +F S++ R+ V 
Sbjct: 141 FDEMPQRNVVAWTSMI-----SGEKDDGTWSTMIKIYERKGFELEALALF-SLMQREGVR 194

Query: 401 WN-----TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
            +     ++L+    L       ++  Q+       +I   + +I  +++ G +  AK +
Sbjct: 195 PSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRV 254

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +  S     +++ W ++I+G  Q+  G +A+  F +M  + I P   T    LSAC+ 
Sbjct: 255 FDRFSS----KDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSY 310

Query: 516 VASLRNGRAIHGYLI-RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYN 573
              ++ G  I   +  ++ +   T     +VD+  + G +++A  + +  P   +  V+ 
Sbjct: 311 TGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWG 370

Query: 574 AMISGYAMH-GLAVEALALFKNLQ 596
           A++     H  L +  +A  K LQ
Sbjct: 371 ALLGACRTHKNLDLAEIAAKKLLQ 394



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 4/160 (2%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+Q+H++++++   F  + YV + L+  Y KC  L  A R+F R   K++  W +II   
Sbjct: 216 GRQVHSQLVRSQ--FDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGY 273

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-HGYVLKVGFDGC 216
            + G  EKAL  F +M    ++PD      VL AC   G V  G  +      K   D  
Sbjct: 274 AQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPK 333

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
               + ++D+ G+ G L EA  + + M +  + + W +++
Sbjct: 334 TEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALL 373


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 193/629 (30%), Positives = 329/629 (52%), Gaps = 54/629 (8%)

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           +P+ F+L N++ A      + + R V   + +      ++  ++L+  Y K   L E  +
Sbjct: 41  NPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRN----LYSWNTLLSSYSKLACLPEMER 96

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLD 297
           VF  M  R++V+WNS+I  Y   G   ++++ +  M   G     R++++++L  ++   
Sbjct: 97  VFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQG 156

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
            +  G Q H   V  G +    +GS +++ YSK GL+  A   F  M E+++V +N LIA
Sbjct: 157 CVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIA 216

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
             +                  +C RI++++Q+F  +  +D + W  ++A +   G   EA
Sbjct: 217 GLM------------------RCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREA 258

Query: 418 SRLFYQMQLEGISPNIISWNSVILG-----FLRNGQMNEAK-----------------DM 455
             LF +M+LE +  +  ++ SV+        L+ G+   A                  DM
Sbjct: 259 IDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDM 318

Query: 456 FLQMQSLGVQ---------PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           + + +S+             N+++WT ++ G  QN    EA+  F +M   GI+P   T+
Sbjct: 319 YCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTL 378

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
              +S+C ++ASL  G   H   +   L     +  +LV +Y KCG+I  + R+F     
Sbjct: 379 GSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSY 438

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            +   + A++SGYA  G A E L LF+++   G  PD +TF  +L+ACS AGLV +G ++
Sbjct: 439 VDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQI 498

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  M  +H++ P  +H+ C+++L SR G L+EA + I  MP  PDA    SLLS+C    
Sbjct: 499 FESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHR 558

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
             E+ ++ +E LL+LEP N  +Y+ LS+ YAA G+W EV+ +R  M++KGLRK PGCSWI
Sbjct: 559 NMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWI 618

Query: 747 QIGEELHVFVACDRSHPKTEEIYATLALL 775
           +   ++H+F A D+S+P +++IY+ L  L
Sbjct: 619 KYKNQVHIFSADDQSNPFSDQIYSELEKL 647



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 217/428 (50%), Gaps = 62/428 (14%)

Query: 87  QGCVYKRDMYTGQQIHARILKNGD--------------------FFARNEYVET--KLVV 124
           QGCV+      G Q+H  ++K G                     F AR  + E   K VV
Sbjct: 155 QGCVH-----LGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVV 209

Query: 125 FY-------AKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177
            Y        +C  ++ + +LF  ++ K+  SW A+I    + GL  +A+  F EM+ + 
Sbjct: 210 MYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLEN 269

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           +  D +   +VL ACG +  +  G+ VH Y+++  +   +FV S+L+DMY KC  ++ A 
Sbjct: 270 LEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAE 329

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
            VF  M  +NVV+W +M+VGY QNG +EEA+++F +M   G+EP   ++ S++S+ ANL 
Sbjct: 330 TVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLA 389

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
           +L+EG Q H  A+++G+     + ++++  Y K G +ED+  +FS M   D V+W  L++
Sbjct: 390 SLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVS 449

Query: 358 SYVQSGQSDVVV--------------ASSIVDMYAKCER---IDNAKQVFNSIILRDVVL 400
            Y Q G+++  +                + + + + C R   +    Q+F S+I    ++
Sbjct: 450 GYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRII 509

Query: 401 -----WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG--FLRNGQMNE-A 452
                +  ++  ++  GR  EA +   +M     SP+ I W S++    F RN ++ + A
Sbjct: 510 PIEDHYTCMIDLFSRAGRLEEARKFINKMPF---SPDAIGWASLLSSCRFHRNMEIGKWA 566

Query: 453 KDMFLQMQ 460
            +  L+++
Sbjct: 567 AESLLKLE 574



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 233/473 (49%), Gaps = 73/473 (15%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H +++K   +  +F+ ++L+  Y K   +  AR+VFD M  RN+ +WN+++  Y + 
Sbjct: 29  KKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKL 88

Query: 262 GLNEEAIRVFYEMTLEGVEPTR--VSVTSILSASANLDALDEGKQAHAVAVING-MELDN 318
               E  RVF+ M      PTR  VS  S++SA A    L +  +A+ + + NG   L+ 
Sbjct: 89  ACLPEMERVFHAM------PTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNR 142

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
           +  S+++   SK G +     V   +V+                 QS V V S +VDMY+
Sbjct: 143 IALSTMLILASKQGCVHLGLQVHGHVVKFGF--------------QSYVFVGSPLVDMYS 188

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
           K   +  A+Q F+ +  ++VV++NTL+A      R  ++ +LFY MQ      + ISW +
Sbjct: 189 KTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQ----EKDSISWTA 244

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I GF +NG   EA D+F +M+   ++ +  T+ ++                        
Sbjct: 245 MIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSV------------------------ 280

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
                      L+AC  V +L+ G+ +H Y+IR D      + ++LVDMY KC +I  A+
Sbjct: 281 -----------LTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAE 329

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
            VF     K +  + AM+ GY  +G + EA+ +F ++Q  GI+PD  T  +++++C++  
Sbjct: 330 TVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLA 389

Query: 619 LVNEGLE-----LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
            + EG +     L  G+ S   V  ++      V L  +CG+++++ R+   M
Sbjct: 390 SLEEGAQFHCRALVSGLISFITVSNAL------VTLYGKCGSIEDSHRLFSEM 436



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 211/485 (43%), Gaps = 88/485 (18%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN Y    L+  Y+K   L    R+F  +  +++ SW ++I      G   +++  +  M
Sbjct: 73  RNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLM 132

Query: 174 QEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
             +G  + +   L  +L      G V  G  VHG+V+K GF   VFV S L+DMY K G 
Sbjct: 133 LYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGL 192

Query: 233 LEEARKVFDGMIARNVV-------------------------------AWNSMIVGYVQN 261
           +  AR+ FD M  +NVV                               +W +MI G+ QN
Sbjct: 193 VFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQN 252

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           GL+ EAI +F EM LE +E  + +  S+L+A   + AL EGKQ HA  +    + +  +G
Sbjct: 253 GLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVG 312

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD--------------- 366
           S++++ Y K   ++ AE VF +M  +++V+W  ++  Y Q+G S+               
Sbjct: 313 SALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIE 372

Query: 367 -------------------------------------VVVASSIVDMYAKCERIDNAKQV 389
                                                + V++++V +Y KC  I+++ ++
Sbjct: 373 PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRL 432

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F+ +   D V W  L++ YA  G++ E  RLF  M   G  P+ +++  V+    R G +
Sbjct: 433 FSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLV 492

Query: 450 NEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
            +   +F  M +   + P    +T +I   ++     EA  F  +M      P       
Sbjct: 493 QKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKM---PFSPDAIGWAS 549

Query: 509 ALSAC 513
            LS+C
Sbjct: 550 LLSSC 554



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 166/321 (51%), Gaps = 16/321 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+  ++    REA+DL  EM+  N ++    +G +L  C     +  G+Q+HA I
Sbjct: 241 SWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYI 300

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++    +  N +V + LV  Y KC ++  A  +F ++  KNV SW A++    + G SE+
Sbjct: 301 IRTD--YQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEE 358

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  F +MQ +G+ PD+F L +V+ +C  L  +  G   H   L  G    + V+++L+ 
Sbjct: 359 AVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVT 418

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +YGKCG +E++ ++F  M   + V+W +++ GY Q G   E +R+F  M   G +P +V+
Sbjct: 419 LYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVT 478

Query: 286 VTSILSASANLDALDEGKQ-------AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
              +LSA +    + +G Q        H +  I          + +I+ +S+ G LE+A 
Sbjct: 479 FIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHY------TCMIDLFSRAGRLEEAR 532

Query: 339 VVFSRM-VERDIVTWNLLIAS 358
              ++M    D + W  L++S
Sbjct: 533 KFINKMPFSPDAIGWASLLSS 553


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 206/625 (32%), Positives = 327/625 (52%), Gaps = 67/625 (10%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++LI  + K G + E+   F+    +NVV+W + I GYVQNG + EA+++F ++    V+
Sbjct: 122 TALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVK 181

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P +V+ TS++ A ANL     G     + V  G E D  + +S+I    ++G +  A  V
Sbjct: 182 PNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREV 241

Query: 341 FSRMVERDIVTW-------------------------------NLLIASYVQSG------ 363
           F RM E+D+V+W                               + +IA Y QSG      
Sbjct: 242 FDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESL 301

Query: 364 -----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIIL----RDVVLWNTLLAAY 408
                      + ++   SSI+   A  E +     +   +      +DV + ++L+  Y
Sbjct: 302 RLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMY 361

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP-- 466
              G + +   LF  +    +  N++SWN+++ G+  NG M EAK +F       + P  
Sbjct: 362 CKCGETKDGRFLFDTI----LEKNMVSWNAMVGGYSLNGHMEEAKYLF------NIMPVR 411

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
           N ++W+ +I+G       +E    F EM+  G  P+ +T +  L AC   ASL  G+ +H
Sbjct: 412 NNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLH 471

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
           G +++  +   T + T+L DMYAK G+I  +K+VF+  P K    + AMI G A  GLA 
Sbjct: 472 GKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAE 531

Query: 587 EALALFKNLQQ-KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
           E+L LF+ +++   I P+ + F  +L ACSH+GLV++GL  F  M + + +KP   HF C
Sbjct: 532 ESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTC 591

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           VV++LSR G L EA   I +MP  P+ +   +LLS C      ELAE ++  L ++   N
Sbjct: 592 VVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAGKLWEMAEKN 651

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
              YV LSN YA++GRW +V +VR +MK KGL+K+ GCSW++I + +H F + D +H ++
Sbjct: 652 CAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEIRDRVHSFYSEDGAHSQS 711

Query: 766 EEIYATLALLGMHVRLVSKV--FCS 788
            EIY  L LLG  ++   +V  FCS
Sbjct: 712 AEIYEILELLGYEMKCFKEVLAFCS 736



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 142/567 (25%), Positives = 256/567 (45%), Gaps = 100/567 (17%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           ++  C+   ++  G    AR L + +    NE   T L+  + K   +  +   F R   
Sbjct: 88  VVHNCMISANVQRGNLDEARKLFD-EMPQTNEISWTALISGFMKYGRVRESMWYFERNPF 146

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +NV SW A I    + G S +A+  F+++ E  V P+     +V++AC  LG  G G +V
Sbjct: 147 QNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSV 206

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA---------------------------- 236
            G ++K G++  + V++SLI +  + G++  A                            
Sbjct: 207 LGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDEL 266

Query: 237 ---RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
              R++FD M  RN V+W++MI  Y Q+G  EE++R+F  M  EG +P     +SILSA 
Sbjct: 267 GEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSAL 326

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           A+++AL  G   H      G E D  + SS+I+ Y K G  +D   +F  ++E+++V+WN
Sbjct: 327 ASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWN 386

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
            ++  Y  +G                   ++ AK +FN + +R+ V W+ ++A + D  +
Sbjct: 387 AMVGGYSLNGH------------------MEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQ 428

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ-------- 465
             E   +F +M L G  PN  +++S++        +++ K++  ++  LG+Q        
Sbjct: 429 FDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTA 488

Query: 466 -----------------------PNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKP 501
                                   N ++WT +I GL ++    E++  F+EM +T  I P
Sbjct: 489 LTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAP 548

Query: 502 STTTITCALSACTDVASLRNG-------RAIHGYLI--RHDLCLPTPIVTSLVDMYAKCG 552
           +       L AC+    +  G        A++G     RH  C        +VDM ++ G
Sbjct: 549 NEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTC--------VVDMLSRAG 600

Query: 553 NIHQAKR-VFDISPSKELPVYNAMISG 578
            + +A+  ++ +    E   + A++SG
Sbjct: 601 RLFEAEEFIYSMPFQPETNAWAALLSG 627



 Score =  179 bits (453), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 219/446 (49%), Gaps = 59/446 (13%)

Query: 74  NFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDF------FARNEYVE----TKLV 123
           +F +G  + G L+    Y+ D+     +    L+ G+       F R E  +    T ++
Sbjct: 199 DFGLGMSVLG-LIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAIL 257

Query: 124 VFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
             Y + D L  A R+F  +  +N  SW+A+I   C+ G  E++L  F  M ++G  P+  
Sbjct: 258 DLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNIS 317

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
              ++L A  ++  +  G  +HG+V K+GF+  VFV+SSLIDMY KCG+ ++ R +FD +
Sbjct: 318 CFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTI 377

Query: 244 IARNVVAWNSMIVGYVQNGLNEEA-------------------------------IRVFY 272
           + +N+V+WN+M+ GY  NG  EEA                                 VF 
Sbjct: 378 LEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFN 437

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
           EM L G  P + + +S+L A A+  +LD+GK  H   V  G++ D  +G+++ + Y+K G
Sbjct: 438 EMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSG 497

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
            +E ++ VF+RM +++ V+W  +I    +SG     +A   + ++ + E+         S
Sbjct: 498 DIESSKKVFNRMPKKNEVSWTAMIQGLAESG-----LAEESLTLFEEMEK--------TS 544

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWNSVILGFLRNGQMNE 451
            I  + V++  +L A +  G   +    F  M+ + G+ P    +  V+    R G++ E
Sbjct: 545 SIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFE 604

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISG 477
           A++    + S+  QP    W  L+SG
Sbjct: 605 AEEF---IYSMPFQPETNAWAALLSG 627



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/273 (19%), Positives = 112/273 (41%), Gaps = 42/273 (15%)

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY-------- 548
           T  K    T    L   T+   +R+G A+H +L +  +     I   L+ MY        
Sbjct: 15  THFKTYAQTCVSLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAE 74

Query: 549 -----------------------AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
                                   + GN+ +A+++FD  P      + A+ISG+  +G  
Sbjct: 75  ADQISKDFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRV 134

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            E++  F+    + +    +++T  ++     G   E ++LF+ +  + +VKP+   F  
Sbjct: 135 RESMWYFERNPFQNV----VSWTAAISGYVQNGFSVEAMKLFIKLL-ESEVKPNKVTFTS 189

Query: 646 VVNLLSRCGNLDEALRV---ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           VV   +  G+    + V   I+    + D  +  SL++ C++  E  LA  + +   ++E
Sbjct: 190 VVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFD---RME 246

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
             +  ++ A+ + Y       E  ++ D M ++
Sbjct: 247 EKDVVSWTAILDLYVEMDELGEARRIFDEMPQR 279


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 212/781 (27%), Positives = 370/781 (47%), Gaps = 95/781 (12%)

Query: 81  IYGELLQGCVYKRDMYT-GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           +   L+  C     M+  G Q+H  + K+G     + YV T ++  Y     +  + ++F
Sbjct: 43  VIASLVTACGRSGSMFREGVQVHGFVAKSG--LLSDVYVSTAILHLYGVYGLVSCSRKVF 100

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +  +NV SW +++      G  E+ +  +  M+ +GV  +   +  V+ +CG L    
Sbjct: 101 EEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDES 160

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            GR + G V+K G +  + V +SLI M G  G+++ A  +FD M  R+ ++WNS+   Y 
Sbjct: 161 LGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYA 220

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           QNG  EE+ R+F  M     E    +V+++LS   ++D    G+  H + V  G +    
Sbjct: 221 QNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVC 280

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS-------------- 365
           + ++++  Y+  G   +A +VF +M  +D+++WN L+AS+V  G+S              
Sbjct: 281 VCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSG 340

Query: 366 --------------------------------------DVVVASSIVDMYAKCERIDNAK 387
                                                 + ++ +++V MY K   +  ++
Sbjct: 341 KSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESR 400

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS------------ 435
           +V   +  RDVV WN L+  YA+     +A   F  M++EG+S N I+            
Sbjct: 401 RVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPG 460

Query: 436 ------------------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
                                    NS+I  + + G ++ ++D+F  + +     N+ITW
Sbjct: 461 DLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDN----RNIITW 516

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
             +++    +  G E +    +M   G+     + +  LSA   +A L  G+ +HG  ++
Sbjct: 517 NAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK 576

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
                 + I  +  DMY+KCG I +  ++   S ++ LP +N +IS    HG   E  A 
Sbjct: 577 LGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCAT 636

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  + + GI P  +TF ++L ACSH GLV++GL  +  +  D  ++P++EH  CV++LL 
Sbjct: 637 FHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLG 696

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G L EA   I  MP  P+  +  SLL++C      +     +E+L +LEP++   YV 
Sbjct: 697 RSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVL 756

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
            SN +A +GRW +V  VR  M  K ++K   CSW+++ +++  F   DR+HP+T EIYA 
Sbjct: 757 SSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAK 816

Query: 772 L 772
           L
Sbjct: 817 L 817



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 163/613 (26%), Positives = 287/613 (46%), Gaps = 102/613 (16%)

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV-GFGR 202
           V+N  SW  ++    RVGL  + +  F +M + G+ P +FV+ +++ ACG  G +   G 
Sbjct: 3   VRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGV 62

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            VHG+V K G    V+V+++++ +YG  G +  +RKVF+ M  RNVV+W S++VGY   G
Sbjct: 63  QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG 122

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             EE I ++  M  EGV     S++ ++S+   L     G+Q     V +G+E    + +
Sbjct: 123 EPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVEN 182

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ------------------ 364
           S+I+    +G ++ A  +F +M ERD ++WN + A+Y Q+G                   
Sbjct: 183 SLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV 242

Query: 365 ----------------------------------SDVVVASSIVDMYAKCERIDNAKQVF 390
                                             S V V ++++ MYA   R   A  VF
Sbjct: 243 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVF 302

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS------------ 438
             +  +D++ WN+L+A++ + GRS +A  L   M   G S N +++ S            
Sbjct: 303 KQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFE 362

Query: 439 ---------VILGFLRN--------------GQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
                    V+ G   N              G+M+E++ + LQM     + +++ W  LI
Sbjct: 363 KGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP----RRDVVAWNALI 418

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS-LRNGRAIHGYLIRHDL 534
            G  ++   ++A+  FQ M   G+  +  T+   LSAC      L  G+ +H Y++    
Sbjct: 419 GGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGF 478

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
                +  SL+ MYAKCG++  ++ +F+   ++ +  +NAM++  A HG   E L L   
Sbjct: 479 ESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSK 538

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH----FGCVVNLL 650
           ++  G+  D  +F+  L+A +   ++ EG +L  G+     VK   EH    F    ++ 
Sbjct: 539 MRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLH-GL----AVKLGFEHDSFIFNAAADMY 593

Query: 651 SRCGNLDEALRVI 663
           S+CG + E ++++
Sbjct: 594 SKCGEIGEVVKML 606



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 125/511 (24%), Positives = 224/511 (43%), Gaps = 104/511 (20%)

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL-DE 301
           M  RN V+WN+M+ G V+ GL  E +  F +M   G++P+   + S+++A     ++  E
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY-- 359
           G Q H     +G+  D  + ++I++ Y   GL+  +  VF  M +R++V+W  L+  Y  
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 360 -------------------------------------------------VQSG-QSDVVV 369
                                                            V+SG +S + V
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 180

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL--E 427
            +S++ M      +D A  +F+ +  RD + WN++ AAYA  G   E+ R+F  M+   +
Sbjct: 181 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 240

Query: 428 GISPNIIS-------------W--------------------NSVILGFLRNGQMNEAKD 454
            ++   +S             W                    N+++  +   G+  EA  
Sbjct: 241 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 300

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F QM +     +LI+W +L++    +    +A+     M+ +G   +  T T AL+AC 
Sbjct: 301 VFKQMPT----KDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACF 356

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
                  GR +HG ++   L     I  +LV MY K G + +++RV    P +++  +NA
Sbjct: 357 TPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNA 416

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG-LVNEGLELF-----V 628
           +I GYA      +ALA F+ ++ +G+  + IT  ++L+AC   G L+  G  L       
Sbjct: 417 LIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSA 476

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           G  SD  VK S+      + + ++CG+L  +
Sbjct: 477 GFESDEHVKNSL------ITMYAKCGDLSSS 501


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 212/781 (27%), Positives = 370/781 (47%), Gaps = 95/781 (12%)

Query: 81  IYGELLQGCVYKRDMY-TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           +   L+  C     M+  G Q+H  + K+G     + YV T ++  Y     +  + ++F
Sbjct: 60  VIASLVTACGRSGSMFREGVQVHGFVAKSG--LLSDVYVSTAILHLYGVYGLVSCSRKVF 117

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +  +NV SW +++      G  E+ +  +  M+ +GV  +   +  V+ +CG L    
Sbjct: 118 EEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDES 177

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            GR + G V+K G +  + V +SLI M G  G+++ A  +FD M  R+ ++WNS+   Y 
Sbjct: 178 LGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYA 237

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           QNG  EE+ R+F  M     E    +V+++LS   ++D    G+  H + V  G +    
Sbjct: 238 QNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVC 297

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS-------------- 365
           + ++++  Y+  G   +A +VF +M  +D+++WN L+AS+V  G+S              
Sbjct: 298 VCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSG 357

Query: 366 --------------------------------------DVVVASSIVDMYAKCERIDNAK 387
                                                 + ++ +++V MY K   +  ++
Sbjct: 358 KSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESR 417

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS------------ 435
           +V   +  RDVV WN L+  YA+     +A   F  M++EG+S N I+            
Sbjct: 418 RVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPG 477

Query: 436 ------------------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
                                    NS+I  + + G ++ ++D+F  + +     N+ITW
Sbjct: 478 DLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDN----RNIITW 533

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
             +++    +  G E +    +M   G+     + +  LSA   +A L  G+ +HG  ++
Sbjct: 534 NAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK 593

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
                 + I  +  DMY+KCG I +  ++   S ++ LP +N +IS    HG   E  A 
Sbjct: 594 LGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCAT 653

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  + + GI P  +TF ++L ACSH GLV++GL  +  +  D  ++P++EH  CV++LL 
Sbjct: 654 FHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLG 713

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G L EA   I  MP  P+  +  SLL++C      +     +E+L +LEP++   YV 
Sbjct: 714 RSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVL 773

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
            SN +A +GRW +V  VR  M  K ++K   CSW+++ +++  F   DR+HP+T EIYA 
Sbjct: 774 SSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAK 833

Query: 772 L 772
           L
Sbjct: 834 L 834



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 168/631 (26%), Positives = 294/631 (46%), Gaps = 102/631 (16%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y K   +  A  LF  + V+N  SW  ++    RVGL  + +  F +M + G+ P +FV+
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 186 PNVLKACGALGWV-GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
            +++ ACG  G +   G  VHG+V K G    V+V+++++ +YG  G +  +RKVF+ M 
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 121

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            RNVV+W S++VGY   G  EE I ++  M  EGV     S++ ++S+   L     G+Q
Sbjct: 122 DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQ 181

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
                V +G+E    + +S+I+    +G ++ A  +F +M ERD ++WN + A+Y Q+G 
Sbjct: 182 IIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGH 241

Query: 365 ----------------------------------------------------SDVVVASS 372
                                                               S V V ++
Sbjct: 242 IEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNT 301

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           ++ MYA   R   A  VF  +  +D++ WN+L+A++ + GRS +A  L   M   G S N
Sbjct: 302 LLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVN 361

Query: 433 IISWNS---------------------VILGFLRN--------------GQMNEAKDMFL 457
            +++ S                     V+ G   N              G+M+E++ + L
Sbjct: 362 YVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLL 421

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
           QM     + +++ W  LI G  ++   ++A+  FQ M   G+  +  T+   LSAC    
Sbjct: 422 QMP----RRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPG 477

Query: 518 S-LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
             L  G+ +H Y++         +  SL+ MYAKCG++  ++ +F+   ++ +  +NAM+
Sbjct: 478 DLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAML 537

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +  A HG   E L L   ++  G+  D  +F+  L+A +   ++ EG +L  G+     V
Sbjct: 538 AANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLH-GL----AV 592

Query: 637 KPSMEH----FGCVVNLLSRCGNLDEALRVI 663
           K   EH    F    ++ S+CG + E ++++
Sbjct: 593 KLGFEHDSFIFNAAADMYSKCGEIGEVVKML 623



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/528 (25%), Positives = 235/528 (44%), Gaps = 104/528 (19%)

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY K G ++ AR +FD M  RN V+WN+M+ G V+ GL  E +  F +M   G++P+   
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 286 VTSILSASANLDAL-DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           + S+++A     ++  EG Q H     +G+  D  + ++I++ Y   GL+  +  VF  M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 345 VERDIVTWNLLIASY--------------------------------------------- 359
            +R++V+W  L+  Y                                             
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 360 ------VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                 V+SG +S + V +S++ M      +D A  +F+ +  RD + WN++ AAYA  G
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 413 RSGEASRLFYQMQL--EGISPNIIS-------------W--------------------N 437
              E+ R+F  M+   + ++   +S             W                    N
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCN 300

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           +++  +   G+  EA  +F QM +     +LI+W +L++    +    +A+     M+ +
Sbjct: 301 TLLRMYAGAGRSVEANLVFKQMPT----KDLISWNSLMASFVNDGRSLDALGLLCSMISS 356

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           G   +  T T AL+AC        GR +HG ++   L     I  +LV MY K G + ++
Sbjct: 357 GKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSES 416

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           +RV    P +++  +NA+I GYA      +ALA F+ ++ +G+  + IT  ++L+AC   
Sbjct: 417 RRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLP 476

Query: 618 G-LVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           G L+  G  L       G  SD  VK S+      + + ++CG+L  +
Sbjct: 477 GDLLERGKPLHAYIVSAGFESDEHVKNSL------ITMYAKCGDLSSS 518


>gi|125589995|gb|EAZ30345.1| hypothetical protein OsJ_14392 [Oryza sativa Japonica Group]
          Length = 704

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 201/660 (30%), Positives = 332/660 (50%), Gaps = 61/660 (9%)

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGY 207
            SW A +  + R G    AL     M       D     + L AC     +  G  VH  
Sbjct: 33  LSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQ 92

Query: 208 VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ------- 260
           V+K G D    V +SL+D Y  C DL+ AR +FD + A N + W+ M+V  V+       
Sbjct: 93  VVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLLSDA 152

Query: 261 ------------------------NGLNE---EAIRVFYEMTLE-GVEPTRVSVTSILSA 292
                                    G NE   +++ +F ++  E GV P   +  S+L A
Sbjct: 153 LDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRA 212

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
              + AL+ G+  H   + +G E + ++ S++++ Y + G ++DA +V++ +    ++T 
Sbjct: 213 CVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITS 272

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
           N LIA ++  G                  R ++AK VF+ +   D   +N ++ AYAD G
Sbjct: 273 NTLIAGFISMG------------------RTEDAKLVFSQMTEHDSGSYNLMIKAYADEG 314

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
           R  +  R+F  M       N+++ NS++   L+NG++ E + +F Q++    + N +TW 
Sbjct: 315 RLEDCRRMFEMMPRR----NMVTLNSMMSVLLQNGKLEEGRKLFEQIKD---ERNTVTWN 367

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           ++ISG  QN   +EA+  F  M    I+ S +T    L AC  + ++  G+ +H  L + 
Sbjct: 368 SMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKT 427

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
                  + T+LVDMY+KCG +  A+  F    S  +  + ++I+G A +G  +EA+  F
Sbjct: 428 PFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSPNVASWTSLINGLAQNGHWMEAIVQF 487

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
             + +  + P+ ITF  IL A + AGLVN+G+  F  M S + V P++EH+ C V+LL R
Sbjct: 488 ARMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSMES-YGVVPTVEHYTCAVDLLGR 546

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
              + EA + I  MP   D  + G+LL+ C  + + E+ E ++E L  +   +   YVA+
Sbjct: 547 ARRVREAEKFISKMPIPADGVVWGALLTACWYTMDLEMGEKVAEKLFYMGTKHISAYVAM 606

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           SN YA  G+W +V +VR  ++    +K PGCSWI++ + +HVF+  DR+HP+ EEIY  L
Sbjct: 607 SNIYAKLGKWEDVVKVRTRLRSINAKKEPGCSWIEVKDMVHVFLVEDRNHPEREEIYLML 666



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 140/526 (26%), Positives = 244/526 (46%), Gaps = 79/526 (15%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +++ ++  ++R+A+     M      +    Y   L  C   R +  G Q+H ++
Sbjct: 34  SWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQV 93

Query: 106 LKNG--DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN----------------- 146
           +K+G  DF      V   L+ FY+ C  LD A  LF  L   N                 
Sbjct: 94  VKSGSDDF----PVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLL 149

Query: 147 ---------------VFSWAAIIGLNCRVGLSE---KALIGFVEM-QEDGVSPDNFVLPN 187
                          +F+W AII    R G +E   K+L  FV++  EDGV P+ F   +
Sbjct: 150 SDALDLLQRMPPSRDLFAWTAIISGYAR-GANEYCCKSLELFVQLLAEDGVMPNEFTYDS 208

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           VL+AC  +G + FGR++HG +++ GF+    + S+L+D+Y + G +++A  V++G+   +
Sbjct: 209 VLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPS 268

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           ++  N++I G++  G  E+A  VF +MT    E    S   ++ A A     DEG+    
Sbjct: 269 LITSNTLIAGFISMGRTEDAKLVFSQMT----EHDSGSYNLMIKAYA-----DEGRLEDC 319

Query: 308 VAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMV-ERDIVTWNLLIASYVQSGQS 365
             +   M   N++  +S+++   + G LE+   +F ++  ER+ VTWN +I+ YVQ+ QS
Sbjct: 320 RRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQS 379

Query: 366 DVVV--------------ASSIVDMYAKCERIDNAKQ--VFNSIILRDVVLWN-----TL 404
              +              AS+   +   C  I   +Q  + ++++ +     N      L
Sbjct: 380 SEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTAL 439

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           +  Y+  G   +A   F  +    +SPN+ SW S+I G  +NG   EA   F +M    V
Sbjct: 440 VDMYSKCGCVSDARAAFSCI----MSPNVASWTSLINGLAQNGHWMEAIVQFARMLKNNV 495

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
           +PN IT+  ++    +    N+ + FF  M   G+ P+    TCA+
Sbjct: 496 KPNEITFLGILMASARAGLVNKGMRFFHSMESYGVVPTVEHYTCAV 541



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 132 LDVASRLFCRLR-VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLK 190
           L+   +LF +++  +N  +W ++I    +   S +AL  F  M    +       P +L 
Sbjct: 347 LEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLH 406

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA 250
           AC  +G +  G+ VH  + K  F+   +V ++L+DMY KCG + +AR  F  +++ NV +
Sbjct: 407 ACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSPNVAS 466

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           W S+I G  QNG   EAI  F  M    V+P  ++   IL ASA    +++G +      
Sbjct: 467 WTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMR-----F 521

Query: 311 INGMELDNVLG-----SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
            + ME   V+      +  ++   +   + +AE   S+M +  D V W  L+ +
Sbjct: 522 FHSMESYGVVPTVEHYTCAVDLLGRARRVREAEKFISKMPIPADGVVWGALLTA 575


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 184/576 (31%), Positives = 296/576 (51%), Gaps = 60/576 (10%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           +I  +   G +  AR  FD    ++ V+WN M+  YV+NG  EEA  +F   T       
Sbjct: 12  MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT------- 64

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
                                           E D +  +++++ Y + G + +A  +F 
Sbjct: 65  --------------------------------EWDVISWNALMSGYVQWGKMSEARELFD 92

Query: 343 RMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQV 389
           RM  RD+V+WN++++ Y + G               DV   +++V  YA+   ++ A++V
Sbjct: 93  RMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRV 152

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F+++  R+ V WN ++AAY       EA  LF  M       N+ SWN+++ G+ + G +
Sbjct: 153 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTMLTGYAQAGML 208

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
            EAK +F  M     Q + ++W  +++  +Q  C  E +  F EM   G   + +   C 
Sbjct: 209 EEAKAVFDTMP----QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACV 264

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           LS C D+A+L  G  +HG LIR    +   +  +L+ MY KCGN+  A+  F+    +++
Sbjct: 265 LSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDV 324

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +N MI+GYA HG   EAL +F  ++     PD IT   +L ACSH+GLV +G+  F  
Sbjct: 325 VSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYS 384

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M  D  V    EH+ C+++LL R G L EA  ++  MP +PD+ + G+LL         E
Sbjct: 385 MHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPE 444

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           L    +E + +LEP+N G YV LSN YA+SG+W +  ++R +M+E+G++K PG SWI++ 
Sbjct: 445 LGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQ 504

Query: 750 EELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
            ++H F A D  HP+ E+IYA L  L M ++    V
Sbjct: 505 NKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYV 540



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 192/413 (46%), Gaps = 64/413 (15%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           + ++  Y + G +EEAR +F+     +V++WN+++ GYVQ G   EA  +F  M    V 
Sbjct: 41  NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDV- 99

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
              VS   ++S  A    + E ++    A +     D    +++++ Y++ G+LE+A  V
Sbjct: 100 ---VSWNIMVSGYARRGDMVEARRLFDAAPVR----DVFTWTAVVSGYAQNGMLEEARRV 152

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSD-------------VVVASSIVDMYAKCERIDNAK 387
           F  M ER+ V+WN ++A+Y+Q    D             V   ++++  YA+   ++ AK
Sbjct: 153 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 212

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ------------------------ 423
            VF+++  +D V W  +LAAY+  G S E  +LF +                        
Sbjct: 213 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 272

Query: 424 -----MQLE------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
                MQL       G        N+++  + + G M +A++ F +M+    + ++++W 
Sbjct: 273 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEME----ERDVVSWN 328

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           T+I+G  ++  G EA+  F  M  T  KP   T+   L+AC+    +  G + + Y + H
Sbjct: 329 TMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGIS-YFYSMHH 387

Query: 533 DLCLPTPI--VTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMH 582
           D  +       T ++D+  + G + +A  +  D+    +  ++ A++    +H
Sbjct: 388 DFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 440



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 168/358 (46%), Gaps = 32/358 (8%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE-DGVSP 180
           +V  YA+   +  A RLF    V++VF+W A++    + G+ E+A   F  M E + VS 
Sbjct: 105 MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSW 164

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVAS--SLIDMYGKCGDLEEARK 238
           +  V   + +           R +           C  VAS  +++  Y + G LEEA+ 
Sbjct: 165 NAMVAAYIQR-----------RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKA 213

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VFD M  ++ V+W +M+  Y Q G +EE +++F EM   G    R +   +LS  A++ A
Sbjct: 214 VFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 273

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           L+ G Q H   +  G  +   +G++++  Y K G +EDA   F  M ERD+V+WN +IA 
Sbjct: 274 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAG 333

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
           Y + G      A  I DM     R  + K   + I L  V      LAA +  G   +  
Sbjct: 334 YARHGFGK--EALEIFDMM----RTTSTKP--DDITLVGV------LAACSHSGLVEKGI 379

Query: 419 RLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
             FY M  + G++     +  +I    R G++ EA D+   M+ +  +P+   W  L+
Sbjct: 380 SYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDL---MKDMPFEPDSTMWGALL 434



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 126/252 (50%), Gaps = 12/252 (4%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN      ++  YA+   L+ A  +F  +  K+  SWAA++    + G SE+ L  F+EM
Sbjct: 190 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 249

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
              G   +      VL  C  +  +  G  +HG +++ G+    FV ++L+ MY KCG++
Sbjct: 250 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 309

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           E+AR  F+ M  R+VV+WN+MI GY ++G  +EA+ +F  M     +P  +++  +L+A 
Sbjct: 310 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 369

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDAEVVFSRM-VE 346
           ++   +++G     ++    M  D  + +       +I+   + G L +A  +   M  E
Sbjct: 370 SHSGLVEKG-----ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 424

Query: 347 RDIVTWNLLIAS 358
            D   W  L+ +
Sbjct: 425 PDSTMWGALLGA 436



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 14/252 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEM-KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHAR 104
           S+   +++ S+     E + L  EM +C  + +    +  +L  C     +  G Q+H R
Sbjct: 225 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEW-VNRSAFACVLSTCADIAALECGMQLHGR 283

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           +++ G  +    +V   L+  Y KC  ++ A   F  +  ++V SW  +I    R G  +
Sbjct: 284 LIRAG--YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGK 341

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA---- 220
           +AL  F  M+     PD+  L  VL AC   G V  G +   Y   +  D  V       
Sbjct: 342 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGIS---YFYSMHHDFGVTAKPEHY 398

Query: 221 SSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           + +ID+ G+ G L EA  +   M    +   W +++ G  +   N E  R   E   E +
Sbjct: 399 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL-GASRIHRNPELGRSAAEKIFE-L 456

Query: 280 EPTRVSVTSILS 291
           EP    +  +LS
Sbjct: 457 EPENAGMYVLLS 468


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 226/745 (30%), Positives = 377/745 (50%), Gaps = 110/745 (14%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G  +HA ++K G  F+   Y+  KL++ Y                             LN
Sbjct: 40  GNVLHAHLIKTG--FSSQRYIAIKLLILY-----------------------------LN 68

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
           CR    + A I  +  + DG    + V+ N    C    +V +G  V   +L   FD   
Sbjct: 69  CR----KFAEIDQIVKEFDG---SDLVVSN----CMISAYVQWGNLVQARLL---FDEMP 114

Query: 218 ----FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
                  S+LI    K G +EE+   F+    +NVV+W + I G+V+NGLN EA+++F+ 
Sbjct: 115 ERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFR 174

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           +   GV P  V+ TS++ A   L     G     + V  G E    + +S+I    ++G 
Sbjct: 175 LLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGE 234

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKC 380
           ++ A  VF RM +RD+V+W  ++ +YV++G             + + +  S+++  Y++ 
Sbjct: 235 IDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQS 294

Query: 381 ERIDNAKQVFNSI---------------------------------------ILRDVVLW 401
              + A ++F+ +                                       I +DV + 
Sbjct: 295 GYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIG 354

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
           ++L+  Y   G+  +  RL + + LE    N++ WNS++ G+  NG++ E +++F  +  
Sbjct: 355 SSLIDLYCKCGKPDDG-RLVFDLILE---KNVVCWNSMVGGYSINGRLEETEELFELIP- 409

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
              + N ++W T+I+G  +N    + +  F  +L +G  P+ +T +  L AC  +ASL  
Sbjct: 410 ---EKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDK 466

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G  +HG +I+  +     + T+L DMYAKCG+I  +K+VF+  P K    +  MI G A 
Sbjct: 467 GMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAE 526

Query: 582 HGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            G AVE+L LF+ +++   + P+ +   ++L ACSH GLV++GL  F  M   + +KP  
Sbjct: 527 SGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKG 586

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           +H+ CVV+LLSR G L EA   I T+P  P+A+   +LLS C K  + ++AE  ++ L Q
Sbjct: 587 KHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQ 646

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           L  +N   YV LSN YA++GRW +VS +R +M+EKGL+K+ GCSW+++  ++H F + D 
Sbjct: 647 LAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFYSEDG 706

Query: 761 SHPKTEEIYATLALLGMHVRLVSKV 785
           SH ++ EIY TL LL   ++   KV
Sbjct: 707 SHSQSNEIYGTLQLLRSEMKCFKKV 731



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 178/404 (44%), Gaps = 59/404 (14%)

Query: 275 TLEGVEPTRV------SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328
           TL  ++P +       +  S+L   +N   + +G   HA  +  G      +   ++  Y
Sbjct: 7   TLLAIDPKKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILY 66

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388
                  + + +       D+V  N +I++YVQ G                   +  A+ 
Sbjct: 67  LNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGN------------------LVQARL 108

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           +F+ +  R+ V W+ L++     GR  E+   F +   +    N++SW + I GF+RNG 
Sbjct: 109 LFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQ----NVVSWTAAISGFVRNGL 164

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLIS--------GLTQNSCGNEAILFFQEMLETGIK 500
             EA  +F ++   GV+PN +T+T+++         GL  +  G    L  +   E  + 
Sbjct: 165 NFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILG----LVVKAGFEHYLS 220

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            S + IT +L     +  +   R +   + + D+       T+++D Y + G++ +A+R+
Sbjct: 221 VSNSLITLSLR----MGEIDLARRVFDRMEKRDVV----SWTAILDAYVETGDLREARRI 272

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           FD  P +    ++AMI+ Y+  G A EAL LF  + Q+G  P+   F   L+A +    +
Sbjct: 273 FDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRAL 332

Query: 621 NEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           + G+ +      +G+  D  +  S+      ++L  +CG  D+ 
Sbjct: 333 SAGINIHGHVTKIGIDKDVFIGSSL------IDLYCKCGKPDDG 370


>gi|297829948|ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328696|gb|EFH59115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 753

 Score =  338 bits (868), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 215/749 (28%), Positives = 367/749 (48%), Gaps = 90/749 (12%)

Query: 73  RNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL 132
           +N  +  E Y +L Q       +  G+  H  ++K+        Y+   L+  Y KC  L
Sbjct: 42  KNTALDSEAYKKLFQTAAKSGSLVLGKLAHGHMVKSSL--NPCLYLLNNLLNMYCKCREL 99

Query: 133 DVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC 192
             A +LF R+  +N+ S+ ++I    +VG  E+A+  F+E ++D +  D F     L  C
Sbjct: 100 GFARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAGALGFC 159

Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
           G    + FG+ +HG V+  G    VF+ + LIDMY KCG L++A  +FD    R+ V+WN
Sbjct: 160 GERCDLDFGKLLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWN 219

Query: 253 SMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA---SANLDALDEGKQAHAVA 309
           S+I GYV+ G  EE + +  +M   G++ T  ++ S+L A   + N   +++G   H  A
Sbjct: 220 SLISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGMAIHCYA 279

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV 369
              GME                                                  D+VV
Sbjct: 280 AKLGMEF-------------------------------------------------DIVV 290

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG-----RSGEASRLFYQM 424
            ++++DMYAK   +  A ++F+ +  ++VV +N +++ +  +       S EA +LF +M
Sbjct: 291 RTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEASSEAFKLFMEM 350

Query: 425 QLEGISPNIISWNSVI--------LGFLRNGQMNEAKDMFLQMQSLGV------------ 464
           Q  G+ P+  +++ V+        L + R       K+ F   + +G             
Sbjct: 351 QRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGST 410

Query: 465 -----------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
                      + ++ +WT++I    QN     A   F+++  + I+P   T++  +SAC
Sbjct: 411 EDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVSLMMSAC 470

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            D A+L +G  I GY I+  +   T + TS + MYAK GN+  A +VF    + ++  Y+
Sbjct: 471 ADFAALSSGEQIQGYAIKSGIDAYTSVKTSSISMYAKSGNMPLANKVFIEVQNPDVATYS 530

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           AMIS  A HG A +AL +F++++ +GI P+   F  +L AC H GLV  G+  F  M + 
Sbjct: 531 AMISSLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVLIACCHGGLVTHGVNYFQTMKNS 590

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           + + P+ +HF C+ +LL R G L +A  +IL+        +  +LLS+C    ++ + + 
Sbjct: 591 YGINPNEKHFTCLADLLGRTGRLSDAENLILSSGFQDHPVMWRALLSSCRVYKDSVIGKR 650

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
           ++E L++LEP+  G+YV L N Y  SG  +   +VR++M+++G++K P  SWI +G + H
Sbjct: 651 VAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEPALSWIVLGNQTH 710

Query: 754 VFVACDRSHPKTEEIYATLALLGMHVRLV 782
            F   D SHP ++ IY  L  +   V  V
Sbjct: 711 SFAVADWSHPSSQMIYTMLDTMNTVVDFV 739



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 142/566 (25%), Positives = 273/566 (48%), Gaps = 40/566 (7%)

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           N+   + +I +  +VGL  + L      Q    + D+     + +     G +  G+  H
Sbjct: 14  NIAQESLVILITKQVGLGYRFLSSLC--QPKNTALDSEAYKKLFQTAAKSGSLVLGKLAH 71

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
           G+++K   + C+++ ++L++MY KC +L  AR++FD M  RN++++NS+I GY Q G  E
Sbjct: 72  GHMVKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIISFNSLISGYTQVGFYE 131

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           +A+ +F E   + ++  + +    L        LD GK  H + V+NG+     L + +I
Sbjct: 132 QAMELFLEARDDNLKLDKFTYAGALGFCGERCDLDFGKLLHGLVVVNGLSQQVFLINVLI 191

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDN 385
           + YSK G L+ A  +F R  ERD V+WN LI+ YV+ G      A   +++ AK  R   
Sbjct: 192 DMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYVRVG-----AAEEPLNLLAKMHRA-- 244

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLG----RSGEASRLFYQMQLEGISPNIISWNSVIL 441
                  + L    L + L A   +L       G A    Y  +L G+  +I+   +++ 
Sbjct: 245 ------GLKLTTYALGSVLKACCINLNEGLMEKGMAIHC-YAAKL-GMEFDIVVRTALLD 296

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ-----NSCGNEAILFFQEMLE 496
            + +NG + EA  +F    SL    N++T+  +ISG  Q     +   +EA   F EM  
Sbjct: 297 MYAKNGSLKEAIKLF----SLMPAKNVVTYNAMISGFLQMDDITDEASSEAFKLFMEMQR 352

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
            G++PS +T +  L AC+   +L  GR IH  + +++      I ++L+++YA  G+   
Sbjct: 353 RGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTED 412

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
             + F  +  +++  + ++I  +  +     A  LF+ L    I P+  T + +++AC+ 
Sbjct: 413 GMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVSLMMSACAD 472

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCV----VNLLSRCGNLDEALRVILTMPCDPDA 672
              ++ G ++       + +K  ++ +  V    +++ ++ GN+  A +V + +  +PD 
Sbjct: 473 FAALSSGEQI-----QGYAIKSGIDAYTSVKTSSISMYAKSGNMPLANKVFIEVQ-NPDV 526

Query: 673 HIIGSLLSTCVKSNETELAEYISEHL 698
               +++S+  +      A  I E +
Sbjct: 527 ATYSAMISSLAQHGSAHDALNIFESM 552



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 146/322 (45%), Gaps = 19/322 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S F Q+  ++ E    EA  L  EM+ R  +  P  +  +L+ C   + +  G+QIHA I
Sbjct: 327 SGFLQMDDITDEAS-SEAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALI 385

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            KN   F  +E++ + L+  YA   + +   + F     +++ SW +II  + +    E 
Sbjct: 386 CKNN--FQSDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLES 443

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A   F ++    + P+ + +  ++ AC     +  G  + GY +K G D    V +S I 
Sbjct: 444 AFDLFRQLFSSPIRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAYTSVKTSSIS 503

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY K G++  A KVF  +   +V  +++MI    Q+G   +A+ +F  M   G++P + +
Sbjct: 504 MYAKSGNMPLANKVFIEVQNPDVATYSAMISSLAQHGSAHDALNIFESMKTRGIKPNQQA 563

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLG--------SSIINFYSKVGLLEDA 337
              +L A  +      G   H V     M+  N  G        + + +   + G L DA
Sbjct: 564 FLGVLIACCH-----GGLVTHGVNYFQTMK--NSYGINPNEKHFTCLADLLGRTGRLSDA 616

Query: 338 E-VVFSRMVERDIVTWNLLIAS 358
           E ++ S   +   V W  L++S
Sbjct: 617 ENLILSSGFQDHPVMWRALLSS 638


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 190/610 (31%), Positives = 309/610 (50%), Gaps = 83/610 (13%)

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           M+ GY ++   + A+  F  M  + V P   + T +L    +   L  GK+ H   + +G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------- 363
              +    + ++N Y+K   + DA  +F RM ERD+V WN +I+ Y Q+G          
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 364 ------------------------------------------QSDVVVASSIVDMYAKCE 381
                                                     +S V V++++VDMY+KC 
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI- 440
            +  A+ +F+ +  R VV WN+++  Y   G +  A  +F +M  EG+ P  ++    + 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 441 ----LGFLRNGQ-----------------MNEAKDMFLQMQSLGVQPN---------LIT 470
               LG L  G+                 MN    M+ + + + +  +         L++
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W  +I G  QN C NEA+  F EM    IKP + T+   + A  +++  R  + IHG +I
Sbjct: 301 WNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVI 360

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           R  L     ++T+LVDMYAKCG IH A+++FD+  ++ +  +NAMI GY  HGL   ++ 
Sbjct: 361 RRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVE 420

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LFK +++  I P+ ITF   L+ACSH+GLV EGL  F  M  D+ ++P+M+H+G +V+LL
Sbjct: 421 LFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLL 480

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
            R G L++A   I  MP  P   + G++L  C      +L E  +  + +L PD+ G +V
Sbjct: 481 GRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHV 540

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            L+N YA +  W +V++VR IM++ GL+K PGCS ++IG E+H F +   SHP++++IY+
Sbjct: 541 LLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYS 600

Query: 771 TLALLGMHVR 780
            L  L   +R
Sbjct: 601 YLETLVDEIR 610



 Score =  236 bits (603), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 153/518 (29%), Positives = 253/518 (48%), Gaps = 62/518 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILKN 108
           +   +K   +  A+   + MK  +  + P +Y    LL+ C    D+  G++IH  ++ +
Sbjct: 2   LKGYAKSSSLDSALSFFSRMK--HDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITS 59

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G  F+ N +  T +V  YAKC  ++ A  +F R+  +++  W  +I    + G ++ AL+
Sbjct: 60  G--FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALM 117

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
             + M E+G  PD+  + ++L A      +  G AVHGYVL+ GF+  V V+++L+DMY 
Sbjct: 118 LVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYS 177

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG +  AR +FDGM  R VV+WNSMI GYVQ+G  E A+ +F +M  EGV+PT V+V  
Sbjct: 178 KCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMG 237

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
            L A A+L  L+ GK  H +     ++ D  + +S+I+ YSK   ++ A  +F  +  + 
Sbjct: 238 ALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKT 297

Query: 349 IVTWNLLIASYVQSG--------------------------------------------- 363
           +V+WN +I  Y Q+G                                             
Sbjct: 298 LVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHG 357

Query: 364 -------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
                    +V V +++VDMYAKC  I  A+++F+ +  R V+ WN ++  Y   G    
Sbjct: 358 LVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKT 417

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLI 475
           +  LF +M+   I PN I++   +     +G + E    F  M+   G++P +  +  ++
Sbjct: 418 SVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMV 477

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
             L +    N+A  F Q+M    IKP  T     L AC
Sbjct: 478 DLLGRAGRLNQAWDFIQKM---PIKPGITVYGAMLGAC 512


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  338 bits (867), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 199/632 (31%), Positives = 318/632 (50%), Gaps = 92/632 (14%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           K G L +A  +FD M  +NVVAW S++ GY +NG  E A+ +F +M   GV P   +  +
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
            L A A+L AL  G+Q H++AV  G   D  +GS +I  YS+ G L  A+ VF RM   D
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 349 IVTWNLLIASYVQSGQ-------------------------------------------- 364
           +V +  LI+++ ++G+                                            
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIK 239

Query: 365 ------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                   V  +++++D Y++      AK VF+S+  ++VV W +++  Y   GR  EA 
Sbjct: 240 KIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEAL 299

Query: 419 RLFYQMQLEGISPNIISWNSVILG---------------------------------FLR 445
           ++F  M  EG+ PN  +  S++LG                                 + R
Sbjct: 300 QVFGDMISEGVDPNEFAL-SIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGR 358

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
            G + E + M  ++++    P+L++WTT IS   QN  G +AI    +M   G  P+   
Sbjct: 359 TGLVEELEAMLNKIEN----PDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYA 414

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT--SLVDMYAKCGNIHQAKRVFDI 563
            +  LS+C DVASL  G   H   ++  L   + I T  +L++MY+KCG +  A+  FD+
Sbjct: 415 FSSVLSSCADVASLDQGMQFHCLALK--LGCDSEICTGNALINMYSKCGQMGSARLAFDV 472

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
             + ++  +N++I G+A HG A +AL +F  ++  GI PD  TF  +L  C+H+G+V EG
Sbjct: 473 MHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEG 532

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
              F  M   +   P+  H+ C++++L R G  DEALR+I  MP +PDA I  +LL++C 
Sbjct: 533 ELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCK 592

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
                ++ +  ++ L++L   +  +YV +SN YA  G W +  +VR  M E G++K+ GC
Sbjct: 593 LHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGC 652

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           SWI+I  E+H F + D SHP ++ IY  L  L
Sbjct: 653 SWIEINNEVHTFASRDMSHPNSDSIYQMLGEL 684



 Score =  202 bits (513), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 141/552 (25%), Positives = 277/552 (50%), Gaps = 55/552 (9%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L  C     +  G+Q+H+  ++ G  FA + ++ + L+  Y++C +L  A  +F R+   
Sbjct: 121 LVACADLGALRAGEQVHSLAVRAG--FAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSP 178

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           +V  + ++I   CR G  E A    ++M + G+ P+   +  +L AC  +     G+ +H
Sbjct: 179 DVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIH 234

Query: 206 GYVL-KVGFDG-CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           GY++ K+G     V+ +++LID Y + G+ + A+ VFD +  +NVV+W SM+  Y+++G 
Sbjct: 235 GYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGR 294

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
            EEA++VF +M  EGV+P   +++ +L A  ++     G+Q H  A+ + +  D  + ++
Sbjct: 295 LEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAIKHDLITDIRVSNA 351

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA------------- 370
           +++ Y + GL+E+ E + +++   D+V+W   I++  Q+G  +  +A             
Sbjct: 352 LLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPN 411

Query: 371 ----SSIVDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLF 421
               SS++   A    +D   Q F+ + L+     ++   N L+  Y+  G+ G A   F
Sbjct: 412 GYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAF 470

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
             M     + ++ SWNS+I G  ++G  N+A ++F +M+S G++P+  T+  ++ G   +
Sbjct: 471 DVMH----THDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHS 526

Query: 482 SCGNEAILFFQEMLET-GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
               E  LFF+ M++     P+ +   C +         RNGR      + +D+    P 
Sbjct: 527 GMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLG-----RNGRFDEALRMINDMPF-EPD 580

Query: 541 VTSLVDMYAKCGNIHQ--------AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
                 + A C  +H+        A R+ ++S  ++   Y  M + YAMHG   +A  + 
Sbjct: 581 ALIWKTLLASC-KLHRNLDIGKLAADRLMELS-DRDSASYVLMSNIYAMHGEWEDARKVR 638

Query: 593 KNLQQKGIDPDS 604
           + + + G+  D+
Sbjct: 639 RRMDETGVKKDA 650



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 212/434 (48%), Gaps = 31/434 (7%)

Query: 47  YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARIL 106
           Y   IS+  +  +   A + L +M  +  +        +L  C        GQQIH  ++
Sbjct: 183 YTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRVLGQQIHGYLI 238

Query: 107 KNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA 166
           K     +++ Y  T L+ FY++     +A  +F  L  KNV SW +++ L  R G  E+A
Sbjct: 239 KKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEA 298

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
           L  F +M  +GV P+ F L  VL ACG+   +G GR +H   +K      + V+++L+ M
Sbjct: 299 LQVFGDMISEGVDPNEFALSIVLGACGS---IGLGRQLHCSAIKHDLITDIRVSNALLSM 355

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           YG+ G +EE   + + +   ++V+W + I    QNG  E+AI +  +M  EG  P   + 
Sbjct: 356 YGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAF 415

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE 346
           +S+LS+ A++ +LD+G Q H +A+  G + +   G+++IN YSK G +  A + F  M  
Sbjct: 416 SSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHT 475

Query: 347 RDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
            D+ +WN LI  + Q G      A+  +++++K           N I   D    +T L 
Sbjct: 476 HDVTSWNSLIHGHAQHGD-----ANKALEVFSKMRS--------NGIKPDD----STFLG 518

Query: 407 AYADLGRSG--EASRLFYQMQLE--GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
                  SG  E   LF+++ ++    +P    +  +I    RNG+ +EA  M   M   
Sbjct: 519 VLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP-- 576

Query: 463 GVQPNLITWTTLIS 476
             +P+ + W TL++
Sbjct: 577 -FEPDALIWKTLLA 589



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 173/360 (48%), Gaps = 35/360 (9%)

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
           D VL    +N   K G L DA  +F RM  +++V W  +++ Y ++G+ +  +A     M
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALA-----M 101

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG--RSGEASRLFYQMQLEGISPNII 434
           +A          +  S +  +    N  L A ADLG  R+GE  ++       G + +  
Sbjct: 102 FA---------DMVESGVAPNDFACNAALVACADLGALRAGE--QVHSLAVRAGFAGDAW 150

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
             + +I  + R G +  AK++F +M S    P+++ +T+LIS   +N     A     +M
Sbjct: 151 IGSCLIEMYSRCGSLPAAKEVFDRMDS----PDVVGYTSLISAFCRNGEFELAAEALIQM 206

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV---TSLVDMYAKC 551
           L+ G+KP+  T+T  L+AC  V     G+ IHGYLI+  + L +  V   T+L+D Y++ 
Sbjct: 207 LKQGLKPNEHTMTTILTACPRVL----GQQIHGYLIKK-IGLRSQSVYSSTALIDFYSRN 261

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G    AK VFD    K +  + +M+  Y   G   EAL +F ++  +G+DP+    + +L
Sbjct: 262 GEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVL 321

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
            AC   GL   G +L       H +   +     ++++  R G L E L  +L    +PD
Sbjct: 322 GACGSIGL---GRQLHCSAIK-HDLITDIRVSNALLSMYGRTG-LVEELEAMLNKIENPD 376


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  338 bits (867), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 232/822 (28%), Positives = 379/822 (46%), Gaps = 101/822 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPE--IYGELLQGCVYKRDMYT-GQQIHARILK 107
           +S   +    RE++    EM  R+F + P       L+  C     M   G Q+H  I+K
Sbjct: 1   MSGFVRAGSYRESMRFFNEM--RDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVK 58

Query: 108 NGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
            G     + +V T LV  Y        A ++F  +  KNV SW A++      G     +
Sbjct: 59  VG--LLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVM 116

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
             +  M+ +G+S ++  + +V+  C +L     G  V G+V+K G +  V VA+SLI M+
Sbjct: 117 NIYRRMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMF 176

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
           G  G +EEA  VF GM   + ++WNSMI  Y++NGL +E++R F  M     E    +++
Sbjct: 177 GYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLS 236

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           ++L+   ++D L  G+  H++ +  G   +    +++I  YS  G  EDAE+VF  MVE+
Sbjct: 237 TMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEK 296

Query: 348 DIVTWNLLIASYVQSG-------------------------------------------- 363
           D+++WN ++A Y Q G                                            
Sbjct: 297 DMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILH 356

Query: 364 --------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                     +V+V +++V +YAK   +  AK+VF ++  RD V WN L+  +AD     
Sbjct: 357 ALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPD 416

Query: 416 EASRLFYQMQLEGISPNIIS------------------------------------WNSV 439
           EA + F  M+ EG+  N I+                                     NS+
Sbjct: 417 EALKAFKLMREEGVPINYITISNVLGACLAPNDLLEHGMPIHAFIILTGFQSDEYVQNSL 476

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           I  + + G +N + ++F ++ S     N   W  +++    +    EA+ F  EM   G+
Sbjct: 477 ITMYAKCGDLNSSNNIFDRLTS----KNASAWNAMMAANAHHGHMEEALKFLLEMRRAGV 532

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS-LVDMYAKCGNIHQAK 558
                + +  L+A   +A L  G+ +HG  ++   C   P V S  +DMY KCG I    
Sbjct: 533 NVDEFSFSECLAAAAKLAILEEGQQLHGLAVKLG-CDSNPFVASATMDMYGKCGEIDDVL 591

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           R+     ++    +N + S ++ HG   +A   F  +   G+ PD +TF ++L+ACSH G
Sbjct: 592 RIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSACSHGG 651

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           +V EGL  +  M  +  +   + H  C+++LL R G   EA   I  MP  P  H+  SL
Sbjct: 652 MVEEGLAYYDSMIKEFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVSPTDHVWRSL 711

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L+ C      EL     E+LL+L+P +   YV  SN  A +G+W +V ++R  M    ++
Sbjct: 712 LAACKTHGNLELGRKAVENLLKLDPSDDSAYVLYSNICATTGKWEDVEKIRRQMGLNKIK 771

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           K P CSW+++  +L +F   D SHP+  EIYA L  L   ++
Sbjct: 772 KKPACSWVKLKNKLSLFGMGDHSHPQASEIYAKLEELKKMIK 813


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 176/527 (33%), Positives = 302/527 (57%), Gaps = 59/527 (11%)

Query: 302 GKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           GK + A  V + M   +V   +++++ Y+K+G++E+  VVF +M  RD V++N LIA + 
Sbjct: 72  GKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFA 131

Query: 361 QSGQS----------------------------------------------------DVV 368
            +G S                                                    +  
Sbjct: 132 SNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTF 191

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           V +++ DMYAKC  ID A+ +F+ +I ++VV WN +++ Y  +G   E   LF +MQL G
Sbjct: 192 VRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSG 251

Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
           + P++++ ++V+  + R G++++A+++F+++     + + I WTT+I G  QN    +A 
Sbjct: 252 LKPDLVTVSNVLNAYFRCGRVDDARNLFIKLP----KKDEICWTTMIVGYAQNGREEDAW 307

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
           + F +ML   +KP + TI+  +S+C  +ASL +G+ +HG ++   +     + ++LVDMY
Sbjct: 308 MLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMY 367

Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
            KCG    A+ +F+  P + +  +NAMI GYA +G  +EAL L++ +QQ+   PD+ITF 
Sbjct: 368 CKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFV 427

Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
            +L+AC +A +V EG + F  + S+H + P+++H+ C++ LL R G++D+A+ +I  MP 
Sbjct: 428 GVLSACINADMVKEGQKYFDSI-SEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPH 486

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
           +P+  I  +LLS C K  + + AE  + HL +L+P N G Y+ LSN YAA GRW +V+ V
Sbjct: 487 EPNYRIWSTLLSVCAKG-DLKNAELAASHLFELDPRNAGPYIMLSNLYAACGRWKDVAVV 545

Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           R +MKEK  +K    SW+++G ++H FV+ D  HP+  +IY  L  L
Sbjct: 546 RSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRL 592



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 160/616 (25%), Positives = 287/616 (46%), Gaps = 82/616 (13%)

Query: 57  EKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNE 116
           ++++ +A+DLL      +F    + Y  L+  C    D    +++ + +  N  F  ++ 
Sbjct: 4   KQKLHQAIDLLYSHGLASF----DDYTRLVLHCARANDFIQAKRLQSHMELNL-FQPKDS 58

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE------------ 164
           ++  +L+  YAK   L  A  +F  +  ++V+SW  ++    ++G+ E            
Sbjct: 59  FIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYR 118

Query: 165 -------------------KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
                              KAL   V MQEDG  P  +   N L+AC  L  +  G+ +H
Sbjct: 119 DSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIH 178

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
           G ++        FV +++ DMY KCGD+++AR +FDGMI +NVV+WN MI GYV+ G   
Sbjct: 179 GRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPN 238

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           E I +F EM L G++P  V+V+++L+A      +D+ +       I   + D +  +++I
Sbjct: 239 ECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARN----LFIKLPKKDEICWTTMI 294

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS---------GQ------------ 364
             Y++ G  EDA ++F  M+ R++   +  I+S V S         GQ            
Sbjct: 295 VGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGID 354

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
           + ++V+S++VDMY KC    +A+ +F ++ +R+V+ WN ++  YA  G+  EA  L+ +M
Sbjct: 355 NSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERM 414

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
           Q E   P+ I++  V+   +    + E +  F  +   G+ P L  +  +I+ L ++   
Sbjct: 415 QQENFKPDNITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLLGRSGSV 474

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
           ++A+   Q M     +P+    +  LS C     L+N      +L   D     P +  L
Sbjct: 475 DKAVDLIQGMPH---EPNYRIWSTLLSVCAK-GDLKNAELAASHLFELDPRNAGPYIM-L 529

Query: 545 VDMYAKCG---NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL------------ 589
            ++YA CG   ++   + +     +K+   Y+ +  G  +H    E              
Sbjct: 530 SNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGEL 589

Query: 590 -ALFKNLQQKGIDPDS 604
             L   LQQ G +PD+
Sbjct: 590 NRLISILQQIGYNPDT 605



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 159/322 (49%), Gaps = 47/322 (14%)

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           D  + + ++ +YAK  ++ +A+ VF+++  RDV  WNTLL+AYA +G       +F QM 
Sbjct: 57  DSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMP 116

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
                 + +S+N++I  F  NG   +A  + ++MQ  G QP            TQ S  N
Sbjct: 117 YR----DSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQP------------TQYSHVN 160

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
                                  AL AC+ +  LR+G+ IHG ++  DL   T +  ++ 
Sbjct: 161 -----------------------ALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMT 197

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           DMYAKCG+I +A+ +FD    K +  +N MISGY   G   E + LF  +Q  G+ PD +
Sbjct: 198 DMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLV 257

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV--- 662
           T +N+LNA    G V++   LF+ +    ++  +    G   N     G  ++A  +   
Sbjct: 258 TVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQN-----GREEDAWMLFGD 312

Query: 663 ILTMPCDPDAHIIGSLLSTCVK 684
           +L     PD++ I S++S+C K
Sbjct: 313 MLRRNVKPDSYTISSMVSSCAK 334



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 140/325 (43%), Gaps = 68/325 (20%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SY   I+  +      +A+ +L  M+   FQ     +   LQ C    D+  G+QIH RI
Sbjct: 122 SYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRI 181

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +        N +V   +   YAKC  +D A  LF  +  KNV SW  +I    ++G   +
Sbjct: 182 VVAD--LGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNE 239

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKA---CGAL--------------------------- 195
            +  F EMQ  G+ PD   + NVL A   CG +                           
Sbjct: 240 CIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQ 299

Query: 196 ------GWVGFG------------------------------RAVHGYVLKVGFDGCVFV 219
                  W+ FG                              + VHG V+ +G D  + V
Sbjct: 300 NGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLV 359

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           +S+L+DMY KCG   +AR +F+ M  RNV+ WN+MI+GY QNG   EA+ ++  M  E  
Sbjct: 360 SSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENF 419

Query: 280 EPTRVSVTSILSASANLDALDEGKQ 304
           +P  ++   +LSA  N D + EG++
Sbjct: 420 KPDNITFVGVLSACINADMVKEGQK 444


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  338 bits (866), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 241/829 (29%), Positives = 387/829 (46%), Gaps = 157/829 (18%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           E    LL+ C+   D+  G+Q+H +I+K G   ARN+ +   LV  Y+KC +LD A+  F
Sbjct: 25  ETLAGLLRRCIGDADLAQGRQLHRQIVKQG--LARNDLLGNYLVQMYSKCRSLDDANAAF 82

Query: 140 CRLRVKNVFSW----------AAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
             LR + + +W          AA+  L  R+ L E+A              +N   PN L
Sbjct: 83  SALRSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERA--------------EN--RPNKL 126

Query: 190 KACGALGWVGFG----------------RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
                LG +  G                R VH  +     +  +FVA++L+D YGKCG +
Sbjct: 127 TIIAVLGAIASGDPSSSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCV 186

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLN-EEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           E A +VF  +   +++ WN+ I+    N    + A+ +   M LEG+ P R S  +ILS+
Sbjct: 187 ESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSS 246

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
             +  +L   +  HA     G   D V+ ++++  Y + G ++++  VF  M  R+ V+W
Sbjct: 247 CGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSW 306

Query: 353 NLLIASYV----------------QSG--------------------------------- 363
           N +IA++                 Q G                                 
Sbjct: 307 NAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWI 366

Query: 364 -----QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                + DV+V +++V MY     ID A+  F++I  +++V WN +L AY D GR+ EA 
Sbjct: 367 ACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAM 426

Query: 419 RLFYQMQLEGISPNIISW---------------------------------NSVILGFLR 445
            LF  M+ + ++PN +S+                                 N V+  F R
Sbjct: 427 ELFAAMKRQSLAPNKVSYLAVLGCCEDVSEARSIHAEVVGNGLFAQESSIANGVVRMFAR 486

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
           +G + EA   F       V  + ++W T ++ L+     + AI  F  M   G +P   T
Sbjct: 487 SGSLEEAVAAF----DATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFT 542

Query: 506 ITCALSACTDVASLRNGRAIHGYL-----IRHDLCLPTPIVTSLVDMYAKCGN-IHQAKR 559
           +   +  C D+ +L  GR+I   L     +  D+     + +++++M AKCG+ + + +R
Sbjct: 543 LVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVV----VASAVMNMVAKCGSSVDECER 598

Query: 560 VFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNACSH 616
           +F   P   K+L  +N MI+ YA HG   +AL LF+ +QQ+  + PDS TF ++L+ CSH
Sbjct: 599 LFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSH 658

Query: 617 AGLVNEGLELFVGMFSDHQV----KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           AGLV +G+  F   F   +V    +  +EH+ C+V++L R G L EA   I  MP   D+
Sbjct: 659 AGLVEDGIHCF---FLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADS 715

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            +  SLL  C    + E  E  +   ++L   +   YV LSN YAA+GRW +  +VR+ M
Sbjct: 716 VVWTSLLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDM 775

Query: 733 KEKGLRKN-PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            E+ ++K  PG S I +   +H F A DRSHP+++ IYA L  L   +R
Sbjct: 776 AERRVKKRVPGKSSIVVKNRVHEFFARDRSHPQSDAIYAELERLKGLIR 824


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  338 bits (866), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 229/766 (29%), Positives = 375/766 (48%), Gaps = 99/766 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQ-IGPEIYGELLQGCVYKRDMYTGQQIHAR 104
           ++  +I   S   + +E V    E+K    Q +   ++  +L+   +    + G+ +HA 
Sbjct: 14  NWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRH-GKSLHAC 72

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR-VKNVFSWAAIIGLNCRVGLS 163
           ++K G  F     +   ++ FY +C   D+A  +F  +R  ++  SW  +I  +   G  
Sbjct: 73  LIKQG--FDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGAL 130

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
              L  F   +  G  P+   +  V++AC  LG    G  +HGY++K GF     V +SL
Sbjct: 131 VAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSL 190

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL-EGVEPT 282
           + MY    D+E AR++FD M  ++V+AW+ MI GY+Q    +  +++F +M L  G+EP 
Sbjct: 191 LSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPD 249

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
            V + S+L A A+                                               
Sbjct: 250 GVVMVSVLKACAS----------------------------------------------- 262

Query: 343 RMVERDIVTWNLLIASYVQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
               RD+ T  L+    +  G   D+ V +S++DMY+KC+   +A +VFN I  R+ V W
Sbjct: 263 ---SRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSW 319

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----------------LGFL 444
           N++L+ +       EA  L   M+ E +  + ++  +++                 +   
Sbjct: 320 NSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIR 379

Query: 445 RNGQMNE------------------AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
           R  + NE                  A ++F +M+    + ++++W+T+ISG       +E
Sbjct: 380 RGSEANELVLSALIDAYAKCYLIEIAWEVFARMR----RRDVVSWSTMISGFAHCGKPDE 435

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           AI  +QEM    +KP+  TI   L AC+  A L+  +  HG  IR        + T++VD
Sbjct: 436 AIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVD 495

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MY+KCG I  ++R FD    K +  ++AMI+ Y M+GLA EALALF  +++ G+ P+ +T
Sbjct: 496 MYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVT 555

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
             ++L ACSH GLV EGL LF  M  +  ++P  EH+ C+V++L R G LD A+ VI  M
Sbjct: 556 TLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAM 615

Query: 667 P--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
           P      A I GSLLS C     TEL +     +L+LEP N   Y+  S+ YAA G W++
Sbjct: 616 PDNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDD 675

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            +++R + KEKG++   G S + I  +   FVA D SHP+++EI++
Sbjct: 676 AARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGDGSHPRSDEIFS 721



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 6/180 (3%)

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
            L  W   I   + N    E +  + E+ + GI+    ++   +       S R+G+++H
Sbjct: 11  KLPNWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLH 70

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLA 585
             LI+      T I  S++  Y +CG+   A  VF+ +  S++   +N +I G+  +G  
Sbjct: 71  ACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGAL 130

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNAC-----SHAGLVNEGLELFVGMFSDHQVKPSM 640
           V  L  F N +  G +P+  T   ++ AC      H GL+  G  +  G ++   V+ S+
Sbjct: 131 VAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSL 190


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 229/766 (29%), Positives = 376/766 (49%), Gaps = 99/766 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQ-IGPEIYGELLQGCVYKRDMYTGQQIHAR 104
           ++  +I   S   + +E V    E+K    Q +   ++  +L+   +    + G+ +HA 
Sbjct: 14  NWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRH-GKSLHAC 72

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR-VKNVFSWAAIIGLNCRVGLS 163
           ++K G  F     +   ++ FY +C   D+A  +F  +R  ++  SW  +I  +   G  
Sbjct: 73  LIKQG--FDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGAL 130

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
              L  F   +  G  P+   +  V++AC  LG    G  +HGY++K GF     V +SL
Sbjct: 131 VAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSL 190

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL-EGVEPT 282
           + MY    D+E AR++FD M  ++V+AW+ MI GY+Q    +  +++F +M L  G+EP 
Sbjct: 191 LSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPD 249

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
            V + S+L A A+                                               
Sbjct: 250 GVVMVSVLKACAS----------------------------------------------- 262

Query: 343 RMVERDIVTWNLLIASYVQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
               RD+ T  L+    +  G   D+ V +S++DMY+KC+   +A +VFN I  R+ V W
Sbjct: 263 ---SRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSW 319

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----------------LGFL 444
           N++L+ +       EA  L   M+ E +  + ++  +++                 +   
Sbjct: 320 NSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIR 379

Query: 445 RNGQMNE------------------AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
           R  + NE                  A ++F +M+    + ++++W+T+ISG       +E
Sbjct: 380 RGSEANELVLSALIDAYAKCYLIEIAWEVFARMR----RRDVVSWSTMISGFAHCGKPDE 435

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           AI  +QEM    +KP+  TI   L AC+  A L+  +  HG  IR        + T++VD
Sbjct: 436 AIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVD 495

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MY+KCG I  ++R FD    K +  ++AMI+ Y M+GLA EALALF  +++ G+ P+ +T
Sbjct: 496 MYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVT 555

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
             ++L ACSH GLV EGL LF  M  +  ++P  EH+ C+V++L R G LD A+ VI  M
Sbjct: 556 TLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAM 615

Query: 667 PCD--PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
           P +    A I GSLLS C     TEL +     +L+LEP N   Y+  S+ YAA G W++
Sbjct: 616 PHNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDD 675

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            +++R + KEKG++   G S + I  +   FVA D SHP+++EI++
Sbjct: 676 AARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGDGSHPRSDEIFS 721



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 6/180 (3%)

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
            L  W   I   + N    E +  + E+ + GI+    ++   +       S R+G+++H
Sbjct: 11  KLPNWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLH 70

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLA 585
             LI+      T I  S++  Y +CG+   A  VF+ +  S++   +N +I G+  +G  
Sbjct: 71  ACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGAL 130

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNAC-----SHAGLVNEGLELFVGMFSDHQVKPSM 640
           V  L  F N +  G +P+  T   ++ AC      H GL+  G  +  G ++   V+ S+
Sbjct: 131 VAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSL 190


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 206/667 (30%), Positives = 339/667 (50%), Gaps = 85/667 (12%)

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA 250
           AC +   +  GR +H ++L         + + ++ MYGKCG L +AR+VFD M  RN+V+
Sbjct: 76  ACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVS 135

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVA- 309
           + S+I GY QNG   EAIR++ +M  E + P + +  SI+ A A+   +  GKQ HA   
Sbjct: 136 YTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVI 195

Query: 310 -----------------------------VINGMELDNVLG-SSIINFYSKVGLLEDAEV 339
                                        V  G+ + +++  SSII  +S++G   +A  
Sbjct: 196 KLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALS 255

Query: 340 VFSRMVERDIVTWN-LLIASYVQSGQS---------------------DVVVASSIVDMY 377
               M+   +   N  +  S +++  S                     + +   S+ DMY
Sbjct: 256 HLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMY 315

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           A+C  +++A++VF+ I   D   WN ++A  A+ G + EA  +F QM+  G  P+ IS  
Sbjct: 316 ARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLR 375

Query: 438 SVIL---------------------GFLRNGQM-NEAKDMFLQMQSLGVQPNL------- 468
           S++                      GFL +  + N    M+     L    NL       
Sbjct: 376 SLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNN 435

Query: 469 ---ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
              ++W T+++   Q+    E +  F+ ML +  +P   T+   L  C +++SL+ G  +
Sbjct: 436 ADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQV 495

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           H Y ++  L     I   L+DMYAKCG++ QA+R+FD   ++++  ++ +I GYA  G  
Sbjct: 496 HCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFG 555

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            EAL LFK ++  GI+P+ +TF  +L ACSH GLV EGL+L+  M ++H + P+ EH  C
Sbjct: 556 EEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSC 615

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           VV+LL+R G L+EA R I  M  +PD  +  +LLS C       LA+  +E++L+++P N
Sbjct: 616 VVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFN 675

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
              +V L + +A+SG W   + +R  MK+  ++K PG SWI+I +++H+F A D  HP+ 
Sbjct: 676 STAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPER 735

Query: 766 EEIYATL 772
           ++IY  L
Sbjct: 736 DDIYTVL 742



 Score =  196 bits (497), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 153/570 (26%), Positives = 254/570 (44%), Gaps = 67/570 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SY   I+  S+  Q  EA+ L  +M   +       +G +++ C    D+  G+Q+HA++
Sbjct: 135 SYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQV 194

Query: 106 LK---NGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL 162
           +K   +    A+N      L+  Y + + +  ASR+F  + +K++ SW++II    ++G 
Sbjct: 195 IKLESSSHLIAQN-----ALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGF 249

Query: 163 SEKALIGFVEMQEDGV-SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVAS 221
             +AL    EM   GV  P+ ++  + LKAC +L    +G  +HG  +K    G      
Sbjct: 250 EFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGC 309

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           SL DMY +CG L  AR+VFD +   +  +WN +I G   NG  +EA+ VF +M   G  P
Sbjct: 310 SLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIP 369

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
             +S+ S+L A     AL +G Q H+  +  G   D  + +S++  Y+    L     +F
Sbjct: 370 DAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLF 429

Query: 342 SRMVER-DIVTWNLLIASYVQSGQ---------------------------------SDV 367
                  D V+WN ++ + +Q  Q                                 S +
Sbjct: 430 EDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSL 489

Query: 368 VVASSI-------------------VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
            + S +                   +DMYAKC  +  A+++F+S+  RDVV W+TL+  Y
Sbjct: 490 KLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGY 549

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPN 467
           A  G   EA  LF +M+  GI PN +++  V+      G + E   ++  MQ+  G+ P 
Sbjct: 550 AQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPT 609

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
               + ++  L +    NEA  F  EM    ++P        LSAC    ++   +    
Sbjct: 610 KEHCSCVVDLLARAGRLNEAERFIDEM---KLEPDVVVWKTLLSACKTQGNVHLAQKAAE 666

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
            +++ D    T  V  L  M+A  GN   A
Sbjct: 667 NILKIDPFNSTAHVL-LCSMHASSGNWENA 695


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 199/632 (31%), Positives = 318/632 (50%), Gaps = 92/632 (14%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           K G L +A  +FD M  +NVVAW S++ GY +NG  E A+ +F +M   GV P   +  +
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
            L A A+L AL  G+Q H++AV  G   D  +GS +I  YS+ G L  A+ VF RM   D
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 349 IVTWNLLIASYVQSGQ-------------------------------------------- 364
           +V +  LI+++ ++G+                                            
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIK 239

Query: 365 ------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                   V  +++++D Y++      AK VF+S+  ++VV W +++  Y   GR  EA 
Sbjct: 240 KIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEAL 299

Query: 419 RLFYQMQLEGISPNIISWNSVILG---------------------------------FLR 445
           ++F  M  EG+ PN  +  S++LG                                 + R
Sbjct: 300 QVFGDMISEGVDPNEFAL-SIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGR 358

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
            G + E + M  ++++    P+L++WTT IS   QN  G +AI    +M   G  P+   
Sbjct: 359 TGLVEELEAMLNKIEN----PDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYA 414

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT--SLVDMYAKCGNIHQAKRVFDI 563
            +  LS+C DVASL  G   H   ++  L   + I T  +L++MY+KCG +  A+  FD+
Sbjct: 415 FSSVLSSCADVASLDQGMQFHCLALK--LGCDSEICTGNALINMYSKCGQMGSARLAFDV 472

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
             + ++  +N++I G+A HG A +AL +F  ++  GI PD  TF  +L  C+H+G+V EG
Sbjct: 473 MHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEG 532

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
              F  M   +   P+  H+ C++++L R G  DEALR+I  MP +PDA I  +LL++C 
Sbjct: 533 ELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCK 592

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
                ++ +  ++ L++L   +  +YV +SN YA  G W +  +VR  M E G++K+ GC
Sbjct: 593 LHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGC 652

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           SWI+I  E+H F + D SHP ++ IY  L  L
Sbjct: 653 SWIEINNEVHTFASRDMSHPNSDSIYQMLGEL 684



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 141/552 (25%), Positives = 277/552 (50%), Gaps = 55/552 (9%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L  C     +  G+Q+H+  ++ G  FA + ++ + L+  Y++C +L  A  +F R+   
Sbjct: 121 LVACADLGALRAGEQVHSLAVRAG--FAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSP 178

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           +V  + ++I   CR G  E A    ++M + G+ P+   +  +L AC  +     G+ +H
Sbjct: 179 DVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIH 234

Query: 206 GYVL-KVGFDG-CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           GY++ K+G     V+ +++LID Y + G+ + A+ VFD +  +NVV+W SM+  Y+++G 
Sbjct: 235 GYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGR 294

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
            EEA++VF +M  EGV+P   +++ +L A  ++     G+Q H  A+ + +  D  + ++
Sbjct: 295 LEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAIKHDLITDIRVSNA 351

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA------------- 370
           +++ Y + GL+E+ E + +++   D+V+W   I++  Q+G  +  +A             
Sbjct: 352 LLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPN 411

Query: 371 ----SSIVDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLF 421
               SS++   A    +D   Q F+ + L+     ++   N L+  Y+  G+ G A   F
Sbjct: 412 GYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAF 470

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
             M     + ++ SWNS+I G  ++G  N+A ++F +M+S G++P+  T+  ++ G   +
Sbjct: 471 DVMH----THDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHS 526

Query: 482 SCGNEAILFFQEMLET-GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
               E  LFF+ M++     P+ +   C +         RNGR      + +D+    P 
Sbjct: 527 GMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLG-----RNGRFDEALRMINDMPF-EPD 580

Query: 541 VTSLVDMYAKCGNIHQ--------AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
                 + A C  +H+        A R+ ++S  ++   Y  M + YAMHG   +A  + 
Sbjct: 581 ALIWKTLLASC-KLHRNLDIGKLAADRLMELS-DRDSASYVLMSNIYAMHGEWEDARKVR 638

Query: 593 KNLQQKGIDPDS 604
           + + + G+  D+
Sbjct: 639 RRMDETGVKKDA 650



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 212/434 (48%), Gaps = 31/434 (7%)

Query: 47  YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARIL 106
           Y   IS+  +  +   A + L +M  +  +        +L  C        GQQIH  ++
Sbjct: 183 YTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRVLGQQIHGYLI 238

Query: 107 KNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA 166
           K     +++ Y  T L+ FY++     +A  +F  L  KNV SW +++ L  R G  E+A
Sbjct: 239 KKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEA 298

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
           L  F +M  +GV P+ F L  VL ACG+   +G GR +H   +K      + V+++L+ M
Sbjct: 299 LQVFGDMISEGVDPNEFALSIVLGACGS---IGLGRQLHCSAIKHDLITDIRVSNALLSM 355

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           YG+ G +EE   + + +   ++V+W + I    QNG  E+AI +  +M  EG  P   + 
Sbjct: 356 YGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAF 415

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE 346
           +S+LS+ A++ +LD+G Q H +A+  G + +   G+++IN YSK G +  A + F  M  
Sbjct: 416 SSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHT 475

Query: 347 RDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
            D+ +WN LI  + Q G      A+  +++++K           N I   D    +T L 
Sbjct: 476 HDVTSWNSLIHGHAQHGD-----ANKALEVFSKMRS--------NGIKPDD----STFLG 518

Query: 407 AYADLGRSG--EASRLFYQMQLE--GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
                  SG  E   LF+++ ++    +P    +  +I    RNG+ +EA  M   M   
Sbjct: 519 VLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP-- 576

Query: 463 GVQPNLITWTTLIS 476
             +P+ + W TL++
Sbjct: 577 -FEPDALIWKTLLA 589



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 173/370 (46%), Gaps = 33/370 (8%)

Query: 307 AVAVINGM--ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
           A A  NG     D VL    +N   K G L DA  +F RM  +++V W  +++ Y ++G+
Sbjct: 35  AAAADNGCAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGR 94

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
            +  +A     M+A          +  S +  +    N  L A ADLG      ++    
Sbjct: 95  PEAALA-----MFA---------DMVESGVAPNDFACNAALVACADLGALRAGEQVHSLA 140

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
              G + +    + +I  + R G +  AK++F +M S    P+++ +T+LIS   +N   
Sbjct: 141 VRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDS----PDVVGYTSLISAFCRNGEF 196

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV--- 541
             A     +ML+ G+KP+  T+T  L+AC  V     G+ IHGYLI+  + L +  V   
Sbjct: 197 ELAAEALIQMLKQGLKPNEHTMTTILTACPRVL----GQQIHGYLIKK-IGLRSQSVYSS 251

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
           T+L+D Y++ G    AK VFD    K +  + +M+  Y   G   EAL +F ++  +G+D
Sbjct: 252 TALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVD 311

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
           P+    + +L AC   GL   G +L       H +   +     ++++  R G L E L 
Sbjct: 312 PNEFALSIVLGACGSIGL---GRQLHCSAIK-HDLITDIRVSNALLSMYGRTG-LVEELE 366

Query: 662 VILTMPCDPD 671
            +L    +PD
Sbjct: 367 AMLNKIENPD 376


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 208/781 (26%), Positives = 374/781 (47%), Gaps = 95/781 (12%)

Query: 81  IYGELLQGCVYKRDMYT-GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           +   L+  C     M+  G Q+H  + K+G     + YV T ++  Y     +  + ++F
Sbjct: 161 VIASLVTACGRSGSMFREGVQVHGFVAKSG--LLSDVYVSTAILHLYGVYGLVSCSRKVF 218

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +  +NV SW +++      G  E+ +  +  M+ +GV  +   +  V+ +CG L    
Sbjct: 219 EEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDES 278

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            GR + G V+K G +  + V +SLI M+G  G+++ A  +F+ +  R+ ++WNS++  Y 
Sbjct: 279 LGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYA 338

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           QNG  EE+ R+F  M     E    +V+++LS   ++D    G+  H + V  G +    
Sbjct: 339 QNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVC 398

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS-------------- 365
           + ++++  Y+  G  E+A++VF +M  +D+++WN L+AS+V  G+S              
Sbjct: 399 VCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTG 458

Query: 366 --------------------------------------DVVVASSIVDMYAKCERIDNAK 387
                                                 + ++ +++V MY K   +  ++
Sbjct: 459 KSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSR 518

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS------------ 435
           +V   +  RDVV WN L+  YA+     +A   F  +++EG+S N I+            
Sbjct: 519 RVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPG 578

Query: 436 ------------------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
                                    NS+I  + + G ++ ++D+F  + +     ++ITW
Sbjct: 579 DLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDN----RSIITW 634

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
             +++    +  G E +    +M   G+     + +  LSA   +A L  G+ +HG  ++
Sbjct: 635 NAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK 694

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
               L   I  +  DMY+KCG I +  ++   S ++ LP +N +IS    HG   E    
Sbjct: 695 LGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCET 754

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  + + GI P  +TF ++L ACSH GLV++GL  +  +  D  ++P++EH  CV++LL 
Sbjct: 755 FHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLG 814

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G L EA   I  MP  P+  +  SLL++C    + +     +E+L +LEP++   +V 
Sbjct: 815 RSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVL 874

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
            SN +A +GRW +V  VR  M  K ++K   CSW+++ +++  F   DR+HP+T EIYA 
Sbjct: 875 SSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAK 934

Query: 772 L 772
           L
Sbjct: 935 L 935



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 168/657 (25%), Positives = 307/657 (46%), Gaps = 98/657 (14%)

Query: 97  TGQQIHARILKNGDFFARNEYVETK-LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
           TG+ +HA  +K      R   + T  L+  Y K   +  A  LF ++ V+N  SW  ++ 
Sbjct: 76  TGRALHALCVKG---LVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMS 132

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG-WVGFGRAVHGYVLKVGFD 214
              RVGL  + +  F +M + G+ P +FV+ +++ ACG  G     G  VHG+V K G  
Sbjct: 133 GIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLL 192

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
             V+V+++++ +YG  G +  +RKVF+ M  RNVV+W S++VGY   G  EE I ++  M
Sbjct: 193 SDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSM 252

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
             EGVE    S++ ++S+   L     G+Q     + +G+E    + +S+I+ +  +G +
Sbjct: 253 RGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNV 312

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQ------------------------------ 364
           + A  +F+++ ERD ++WN ++A+Y Q+G                               
Sbjct: 313 DYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVL 372

Query: 365 ----------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                 S V V ++++ MYA   R + A  VF  +  +D++ WN
Sbjct: 373 GDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWN 432

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS---------------------VIL 441
           +L+A++ + GRS +A  +   M   G S N +++ S                     V+ 
Sbjct: 433 SLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVS 492

Query: 442 GFLRN--------------GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
           G   N              G M+ ++ + LQM     + +++ W  LI G  +N   ++A
Sbjct: 493 GLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMP----RRDVVAWNALIGGYAENEDPDKA 548

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVAS-LRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           +  FQ +   G+  +  T+   LSAC      L  G+ +H Y++         +  SL+ 
Sbjct: 549 LAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLIT 608

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MYAKCG++  ++ +F+   ++ +  +NA+++  A HG   E L L   ++  G+  D  +
Sbjct: 609 MYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFS 668

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
           F+  L+A +   ++ EG +L  G+      +     F    ++ S+CG + E ++++
Sbjct: 669 FSEGLSAAAKLAVLEEGQQLH-GLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKML 724



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 137/266 (51%), Gaps = 13/266 (4%)

Query: 401 WNTLLAAYADLGRSG----EASRLFYQMQLEG-ISPNIISWNSVILGFLRNGQMNEAKDM 455
           WN  L+ +   G S        R  + + ++G +  +++  N++I  + + G++  A+ +
Sbjct: 56  WNPELSCFDQTGFSQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYL 115

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +M       N ++W T++SG+ +     E + FFQ+M + GIKPS+  I   ++AC  
Sbjct: 116 FDKMPV----RNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGR 171

Query: 516 VASL-RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
             S+ R G  +HG++ +  L     + T+++ +Y   G +  +++VF+  P + +  + +
Sbjct: 172 SGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTS 231

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL-ELFVGMFSD 633
           ++ GY+  G   E + ++K+++ +G++ +  + + ++++C    L +E L    +G    
Sbjct: 232 LMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGL--LKDESLGRQIIGQVIK 289

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEA 659
             ++  +     ++++    GN+D A
Sbjct: 290 SGLESKLAVENSLISMFGNMGNVDYA 315


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/587 (31%), Positives = 305/587 (51%), Gaps = 30/587 (5%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           ++L++C     V   + V   ++  GF    +VA +++  +     +  AR +FD     
Sbjct: 30  SLLRSCKT---VALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDP 86

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
            V  WN++  GY  N    E + +F +M    V P   +   +L + A + A  EG++ H
Sbjct: 87  KVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIH 146

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
              +  G+E +  + +++I+ YS    +  A  +F  M+ER+IV W  +I+ Y+      
Sbjct: 147 CEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYIL----- 201

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                        C R+  A+++F+    RDVVLWN +++ Y ++G    A +LF  M  
Sbjct: 202 -------------CNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPY 248

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                + +SWN+++ G+  NG +   + +F +M     + N+ +W  LI G   N C  E
Sbjct: 249 R----DTMSWNTMLNGYANNGDVEACEQLFEEMP----ERNVFSWNGLIGGYAHNGCFFE 300

Query: 487 AILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
            +  F+ ML  G + P+  T+   LSAC  + +L  G+ +H Y           +  +L+
Sbjct: 301 VLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALI 360

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           DMY+KCG I  A  VF+    K+L  +N+MI G A HG   +AL LF  ++  G  PD I
Sbjct: 361 DMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGI 420

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           TF  +L +C+H GLV EG   F  M +++ + P +EH+GC+V+L  R G LD A+  +  
Sbjct: 421 TFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKR 480

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MP + DA I  +LL  C      +LAE   + L+ LEP NP NYV LSN Y   GRW +V
Sbjct: 481 MPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDV 540

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           ++++ +M++ G +K PGCS I++ + +  F + D  H +++EIY  L
Sbjct: 541 ARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVL 587



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 205/446 (45%), Gaps = 50/446 (11%)

Query: 40  YESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQ 99
           + ++ + YFH           RE V L  +MK  + +     +  +L+ C        G+
Sbjct: 91  WNAISRGYFHN-------AFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGE 143

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG---L 156
           +IH  ++K G     N++V T L+  Y+   A+  A +LF  +  +N+ +W ++I    L
Sbjct: 144 EIHCEVIKGG--LEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYIL 201

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
             RV L+ +          D     + VL N++ +    G++  G       L   FD  
Sbjct: 202 CNRVALARRLF--------DLAPERDVVLWNIMVS----GYIEIGDMKAARKL---FDTM 246

Query: 217 VFVAS----SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
            +  +    ++++ Y   GD+E   ++F+ M  RNV +WN +I GY  NG   E +R F 
Sbjct: 247 PYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFK 306

Query: 273 EMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
            M ++G V P   ++ ++LSA A L ALD GK  H  A   G +    +G+++I+ YSK 
Sbjct: 307 RMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKC 366

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
           GL+E+A  VF  M  +D++TWN +I      G       +  + ++ +  +I+  K    
Sbjct: 367 GLIENAMEVFESMDLKDLITWNSMICGLATHG-----CGADALTLFHQM-KINGEKP--- 417

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMN 450
                D + +  +L +   LG   E +  F  M  E  I+P I  +  ++  F R G ++
Sbjct: 418 -----DGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLD 472

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLIS 476
            A +   +M    ++ + + W  L+ 
Sbjct: 473 RAIEFVKRMP---MEADAVIWAALLG 495



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 172/364 (47%), Gaps = 40/364 (10%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFV 184
           YA    ++   +LF  +  +NVFSW  +IG     G   + L  F  M  DG V P++  
Sbjct: 261 YANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDAT 320

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           L  VL AC  LG +  G+ VH Y   +GF G ++V ++LIDMY KCG +E A +VF+ M 
Sbjct: 321 LVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMD 380

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            ++++ WNSMI G   +G   +A+ +F++M + G +P  ++   +L +  +L  ++EG  
Sbjct: 381 LKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEG-- 438

Query: 305 AHAVAVINGMELDNVLGSSI------INFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIA 357
               +  N M  +  +   I      ++ + + GLL+ A     RM +E D V W  L+ 
Sbjct: 439 ---TSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALL- 494

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                G   +     + ++  +   +   K   N ++L ++         Y DLGR  + 
Sbjct: 495 -----GACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNI---------YGDLGRWKDV 540

Query: 418 SRLFYQMQLEGISP----NIISWNSVILGFL----RNGQMNEA----KDMFLQMQSLGVQ 465
           +RL   M+  G       ++I  N  ++ F     R+ Q  E     K +   ++S G  
Sbjct: 541 ARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSFGYG 600

Query: 466 PNLI 469
           PN++
Sbjct: 601 PNMM 604


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 199/657 (30%), Positives = 329/657 (50%), Gaps = 84/657 (12%)

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE 266
           +++K GF       + +I ++ K G   EA +VF+ +  +  V ++ M+ GY +N    +
Sbjct: 69  FIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGD 128

Query: 267 AIRVFYEMTLEGVEPTRVSVTSILS-ASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           A+  F  M  + V         +L     NLD L +G++ H + + NG E +  + ++++
Sbjct: 129 ALCFFLRMMCDEVRLVVGDYACLLQLCGENLD-LKKGREIHGLIITNGFESNLFVMTAVM 187

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------------- 363
           + Y+K   +++A  +F RM  +D+V+W  L+A Y Q+G                      
Sbjct: 188 SLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSV 247

Query: 364 ------------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
                                         +S V V ++++DMY KC     A+ VF  +
Sbjct: 248 TLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGM 307

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL-----GFLRNGQ 448
             + VV WNT++   A  G S EA   F +M  EG  P  ++   V+L     G L  G 
Sbjct: 308 RSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGW 367

Query: 449 -----------------MNEAKDMFLQMQSLGVQPNL--------ITWTTLISGLTQNSC 483
                            MN    M+ + + + +  ++        +TW  +I G  QN C
Sbjct: 368 FVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNVTWNAMILGYAQNGC 427

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
             EA+  F  M   GIK    T+   ++A  D +  R  + IHG  +R  +     + T+
Sbjct: 428 VKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTA 487

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           LVDMYAKCG I  A+++FD+   + +  +NAMI GY  HG+  E L LF  +Q+  + P+
Sbjct: 488 LVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPN 547

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            ITF ++++ACSH+G V EGL LF  M  D+ ++P+M+H+  +V+LL R G LD+A   I
Sbjct: 548 DITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFI 607

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             MP  P   ++G++L  C      EL E  ++ L +L+PD  G +V L+N YA++  W+
Sbjct: 608 QEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWD 667

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           +V++VR  M++KGL K PGCSW+++  E+H F +   +HP++++IYA L  LG  ++
Sbjct: 668 KVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIK 724



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 160/522 (30%), Positives = 262/522 (50%), Gaps = 63/522 (12%)

Query: 47  YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARIL 106
           Y   +   +K   + +A+     M C   ++    Y  LLQ C    D+  G++IH  I+
Sbjct: 113 YHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLII 172

Query: 107 KNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA 166
            NG  F  N +V T ++  YAKC  +D A ++F R++ K++ SW  ++    + G +++A
Sbjct: 173 TNG--FESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRA 230

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
           L   ++MQE G  PD+  L ++L A   +  +  GR++HGY  + GF+  V V ++L+DM
Sbjct: 231 LQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDM 290

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           Y KCG    AR VF GM ++ VV+WN+MI G  QNG +EEA   F +M  EG  PTRV++
Sbjct: 291 YFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTM 350

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLG--SSIINFYSKVGLLEDAEVVFSRM 344
             +L A ANL  L+ G   H   +++ ++LD+ +   +S+I+ YSK   ++ A  +F+ +
Sbjct: 351 MGVLLACANLGDLERGWFVH--KLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL 408

Query: 345 VERDIVTWNLLIASYVQSG----------------------------------------- 363
            E+  VTWN +I  Y Q+G                                         
Sbjct: 409 -EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAK 467

Query: 364 -----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                       ++V V++++VDMYAKC  I  A+++F+ +  R V+ WN ++  Y   G
Sbjct: 468 WIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHG 527

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITW 471
              E   LF +MQ   + PN I++ SVI     +G + E   +F  MQ    ++P +  +
Sbjct: 528 VGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHY 587

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           + ++  L +    ++A  F QEM    IKP  + +   L AC
Sbjct: 588 SAMVDLLGRAGQLDDAWNFIQEM---PIKPGISVLGAMLGAC 626


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/587 (31%), Positives = 305/587 (51%), Gaps = 30/587 (5%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           ++L++C     V   + V   ++  GF    +VA +++  +     +  AR +FD     
Sbjct: 72  SLLRSCKT---VALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDP 128

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
            V  WN++  GY  N    E + +F +M    V P   +   +L + A + A  EG++ H
Sbjct: 129 KVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIH 188

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
              +  G+E +  + +++I+ YS    +  A  +F  M+ER+IV W  +I+ Y+      
Sbjct: 189 CEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYIL----- 243

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                        C R+  A+++F+    RDVVLWN +++ Y ++G    A +LF  M  
Sbjct: 244 -------------CNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPY 290

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                + +SWN+++ G+  NG +   + +F +M     + N+ +W  LI G   N C  E
Sbjct: 291 R----DTMSWNTMLNGYANNGDVEACEQLFEEMP----ERNVFSWNGLIGGYAHNGCFFE 342

Query: 487 AILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
            +  F+ ML  G + P+  T+   LSAC  + +L  G+ +H Y           +  +L+
Sbjct: 343 VLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALI 402

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           DMY+KCG I  A  VF+    K+L  +N+MI G A HG   +AL LF  ++  G  PD I
Sbjct: 403 DMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGI 462

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           TF  +L +C+H GLV EG   F  M +++ + P +EH+GC+V+L  R G LD A+  +  
Sbjct: 463 TFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKR 522

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MP + DA I  +LL  C      +LAE   + L+ LEP NP NYV LSN Y   GRW +V
Sbjct: 523 MPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDV 582

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           ++++ +M++ G +K PGCS I++ + +  F + D  H +++EIY  L
Sbjct: 583 ARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVL 629



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 195/451 (43%), Gaps = 66/451 (14%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           Q++ A+I+ +G  F  N YV   +V  +     +  A  LF       V  W AI     
Sbjct: 84  QKVQAQIITHG--FQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYF 141

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
                 + +  F +M+   V P+ F  P VLK+C  +G    G  +H  V+K G +G  F
Sbjct: 142 HNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQF 201

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           VA++LID+Y     +  A K+F GM+ RN+VAW SMI GY+       A R+F       
Sbjct: 202 VATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLF------D 255

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL-DNVLGSSIINFYSKVGLLEDA 337
           + P R  V   +  S  ++    G    A  + + M   D +  ++++N Y+  G +E  
Sbjct: 256 LAPERDVVLWNIMVSGYIEI---GDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEAC 312

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSG---------------------------------- 363
           E +F  M ER++ +WN LI  Y  +G                                  
Sbjct: 313 EQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACAR 372

Query: 364 -------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                              +  + V ++++DMY+KC  I+NA +VF S+ L+D++ WN++
Sbjct: 373 LGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSM 432

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLG 463
           +   A  G   +A  LF+QM++ G  P+ I++  V+      G + E    F  M     
Sbjct: 433 ICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYS 492

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           + P +  +  ++    +    + AI F + M
Sbjct: 493 IAPQIEHYGCMVDLFGRAGLLDRAIEFVKRM 523



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 173/364 (47%), Gaps = 40/364 (10%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFV 184
           YA    ++   +LF  +  +NVFSW  +IG     G   + L  F  M  DG V P++  
Sbjct: 303 YANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDAT 362

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           L  VL AC  LG +  G+ VH Y   +GF G ++V ++LIDMY KCG +E A +VF+ M 
Sbjct: 363 LVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMD 422

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            ++++ WNSMI G   +G   +A+ +F++M + G +P  ++   +L +  +L  ++EG  
Sbjct: 423 LKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEG-- 480

Query: 305 AHAVAVINGMELDNVLGSSI------INFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIA 357
               +  N M  +  +   I      ++ + + GLL+ A     RM +E D V W  L+ 
Sbjct: 481 ---TSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALL- 536

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
                G   +     + ++  +   +   K   N ++L ++         Y DLGR  + 
Sbjct: 537 -----GACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNI---------YGDLGRWKDV 582

Query: 418 SRLFYQMQLEGISP----NIISWNSVILGFL----RNGQMNEA----KDMFLQMQSLGVQ 465
           +RL   M+  G       ++I  N  ++ F     R+ Q  E     K +   ++S G +
Sbjct: 583 ARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSFGYE 642

Query: 466 PNLI 469
           PN++
Sbjct: 643 PNMM 646



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 205/446 (45%), Gaps = 50/446 (11%)

Query: 40  YESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQ 99
           + ++ + YFH           RE V L  +MK  + +     +  +L+ C        G+
Sbjct: 133 WNAISRGYFHN-------AFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGE 185

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG---L 156
           +IH  ++K G     N++V T L+  Y+   A+  A +LF  +  +N+ +W ++I    L
Sbjct: 186 EIHCEVIKGG--LEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYIL 243

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
             RV L+ +          D     + VL N++ +    G++  G       L   FD  
Sbjct: 244 CNRVALARRLF--------DLAPERDVVLWNIMVS----GYIEIGDMKAARKL---FDTM 288

Query: 217 VFVAS----SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
            +  +    ++++ Y   GD+E   ++F+ M  RNV +WN +I GY  NG   E +R F 
Sbjct: 289 PYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFK 348

Query: 273 EMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
            M ++G V P   ++ ++LSA A L ALD GK  H  A   G +    +G+++I+ YSK 
Sbjct: 349 RMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKC 408

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
           GL+E+A  VF  M  +D++TWN +I      G       +  + ++ +  +I+  K    
Sbjct: 409 GLIENAMEVFESMDLKDLITWNSMICGLATHG-----CGADALTLFHQM-KINGEKP--- 459

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMN 450
                D + +  +L +   LG   E +  F  M  E  I+P I  +  ++  F R G ++
Sbjct: 460 -----DGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLD 514

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLIS 476
            A +   +M    ++ + + W  L+ 
Sbjct: 515 RAIEFVKRMP---MEADAVIWAALLG 537


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 199/688 (28%), Positives = 344/688 (50%), Gaps = 100/688 (14%)

Query: 188 VLKACGALGWVGFGRAVHGYVL-------KVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           ++ AC  L  +  GR VH +++            G   + + LI MYG+C   + AR+VF
Sbjct: 50  LVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVF 109

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D M ARN V+W S+I  +VQNG   +A+ +F  M   G    + ++ S + A   L  + 
Sbjct: 110 DEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVG 169

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G+Q HA A+ +    D ++ ++++  YSK GL++D  ++F R+ ++D+++W  +IA + 
Sbjct: 170 TGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFA 229

Query: 361 QSG-----------------------------------------------------QSDV 367
           Q G                                                       D+
Sbjct: 230 QQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDL 289

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
            V  S+ DMYA+C+ +D+A+  F  I   D+V WN+++ AY+  G   EA  LF +M+  
Sbjct: 290 YVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDS 349

Query: 428 GISPNIIS-----------------------------------WNSVILGFLRNGQMNEA 452
           G+ P+ I+                                    NS++  + R   ++ A
Sbjct: 350 GLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSA 409

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
            D+F +++      +++TW ++++   Q++   E +  F  + ++       ++   LSA
Sbjct: 410 MDVFHEIK----DQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSA 465

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI-SPSKELPV 571
             ++      + +H Y  +  L     +  +L+D YAKCG++  A R+F+I   ++++  
Sbjct: 466 SAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFS 525

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           ++++I GYA  G A EA  LF  ++  GI P+ +TF  +L ACS  G VNEG   +  M 
Sbjct: 526 WSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIME 585

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
            ++ + P+ EH  C+V+LL+R G L EA   I  MP +PD  +  +LL+     N+ E+ 
Sbjct: 586 PEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMG 645

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           +  +E +L ++P +   YV L N YAASG WNE ++++  M+  G++K+PG SW+++  E
Sbjct: 646 KRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGE 705

Query: 752 LHVFVACDRSHPKTEEIYATLALLGMHV 779
           L VF+  DRSHP++EEIYA L L+GM +
Sbjct: 706 LKVFIVEDRSHPESEEIYAMLELIGMEM 733


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 224/735 (30%), Positives = 373/735 (50%), Gaps = 110/735 (14%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G  +HA ++K G  F+   Y+  KL++ Y                             LN
Sbjct: 40  GNVLHAHLIKTG--FSSQRYIAIKLLILY-----------------------------LN 68

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
           CR    + A I  +  + DG    + V+ N    C    +V +G  V   +L   FD   
Sbjct: 69  CR----KFAEIDQIVKEFDG---SDLVVSN----CMISAYVQWGNLVQARLL---FDEMP 114

Query: 218 ----FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
                  S+LI    K G +EE+   F+    +NVV+W + I G+V+NGLN EA+++F+ 
Sbjct: 115 ERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFR 174

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           +   GV P  V+ TS++ A   L     G     + V  G E    + +S+I    ++G 
Sbjct: 175 LLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGE 234

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKC 380
           ++ A  VF RM +RD+V+W  ++ +YV++G             + + +  S+++  Y++ 
Sbjct: 235 IDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQS 294

Query: 381 ERIDNAKQVFNSI---------------------------------------ILRDVVLW 401
              + A ++F+ +                                       I +DV + 
Sbjct: 295 GYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIG 354

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
           ++L+  Y   G+  +  RL + + LE    N++ WNS++ G+  NG++ E +++F  +  
Sbjct: 355 SSLIDLYCKCGKPDDG-RLVFDLILE---KNVVCWNSMVGGYSINGRLEETEELFELIP- 409

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
              + N ++W T+I+G  +N    + +  F  +L +G  P+ +T +  L AC  +ASL  
Sbjct: 410 ---EKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDK 466

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G  +HG +I+  +     + T+L DMYAKCG+I  +K+VF+  P K    +  MI G A 
Sbjct: 467 GMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAE 526

Query: 582 HGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            G AVE+L LF+ +++   + P+ +   ++L ACSH GLV++GL  F  M   + +KP  
Sbjct: 527 SGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKG 586

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           +H+ CVV+LLSR G L EA   I T+P  P+A+   +LLS C K  + ++AE  ++ L Q
Sbjct: 587 KHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQ 646

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           L  +N   YV LSN YA++GRW +VS +R +M+EKGL+K+ GCSW+++  ++H F + D 
Sbjct: 647 LAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFYSEDG 706

Query: 761 SHPKTEEIYATLALL 775
           SH ++ EIY TL LL
Sbjct: 707 SHSQSNEIYGTLQLL 721



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 177/404 (43%), Gaps = 59/404 (14%)

Query: 275 TLEGVEPTRV------SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328
           TL  ++P +       +  S+L   +N   + +G   HA  +  G      +   ++  Y
Sbjct: 7   TLLAIDPKKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILY 66

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388
                  + + +       D+V  N +I++YVQ G                   +  A+ 
Sbjct: 67  LNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGN------------------LVQARL 108

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           +F+ +  R+ V W+ L++     GR  E+   F +   +    N++SW + I GF+RNG 
Sbjct: 109 LFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQ----NVVSWTAAISGFVRNGL 164

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLIS--------GLTQNSCGNEAILFFQEMLETGIK 500
             EA  +F ++   GV+PN +T+T+++         GL  +  G    L  +   E  + 
Sbjct: 165 NFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILG----LVVKAGFEHYLS 220

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            S + IT +L     +  +   R +   + + D+   T I    +D Y + G++ +A+R+
Sbjct: 221 VSNSLITLSLR----MGEIDLARRVFDRMEKRDVVSWTAI----LDAYVETGDLREARRI 272

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           FD  P +    ++AMI+ Y+  G A EAL LF  + Q+G  P+   F   L+A +    +
Sbjct: 273 FDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRAL 332

Query: 621 NEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           + G+ +      +G+  D  +  S+      ++L  +CG  D+ 
Sbjct: 333 SAGINIHGHVTKIGIDKDVFIGSSL------IDLYCKCGKPDDG 370


>gi|302793632|ref|XP_002978581.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
 gi|300153930|gb|EFJ20567.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
          Length = 785

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/684 (27%), Positives = 347/684 (50%), Gaps = 93/684 (13%)

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  Y  C ++D A R+F  +  +NV +W A+IG +    L E+A   F  M+ +G   + 
Sbjct: 103 LTMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAVTSL-EQAFKVFRLMELEGFKSNF 161

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
                +++AC    ++  G  +H   ++        + ++LI MYG+CG LE+AR +F  
Sbjct: 162 VTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARAIFSS 221

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M+ R+++AWN++I  Y Q+G  EEA+ ++  M  EG +P +V+  ++L+ S   +AL E 
Sbjct: 222 MVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLTMSNGPEALTEV 281

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           K  H+  V +G+ ++  LG++++  YSK   LED   +F +M +R++++WN+++ +Y + 
Sbjct: 282 KLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKH 341

Query: 363 G----------------------------------------------------QSDVVVA 370
           G                                                    ++D+++ 
Sbjct: 342 GLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADLILW 401

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           +S+++MY +C  ++ A+ VF+ I+ R+V+ W  +L AY+   R   A  LF+ + L G+ 
Sbjct: 402 NSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLSGVK 461

Query: 431 PNIISW-----------------------------------NSVILGFLRNGQMNEAKDM 455
           P  I++                                   ++++  + R G + +AK  
Sbjct: 462 PTCITFLEALDACVGAEALDKGRLVHSCAVQSGNDIDVSLGSALVAMYGRCGSIRDAKAC 521

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F   +   V+ N +TW+ +I+   Q+    E +   + M + G+  S  T    LSAC++
Sbjct: 522 FDDTE---VRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFASTLSACSN 578

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVT-SLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
           +A LR G+ IH Y+           VT SLV MY KCG++  A+ VF+ S  ++   +NA
Sbjct: 579 LADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVFETSRRQDTICWNA 638

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           +ISGYA H    +A+ LF  +QQ+G+ PD +TF  IL+ CSH GL++EG+  +  M  + 
Sbjct: 639 IISGYAQHSQTRDAVELFHRMQQEGVAPDPVTFVCILSVCSHGGLLDEGVYAYASMV-EL 697

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            ++P+ +++ CV++LL R G L EA   I ++   P    + SLLS+C    + +     
Sbjct: 698 GLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGTRPAIETLTSLLSSCKSHGDVQRGRRA 757

Query: 695 SEHLLQLEPDNPGNYVALSNAYAA 718
           +E +++++P +   +V LS+ Y+A
Sbjct: 758 AEGIMEMDPRSSSAHVVLSSIYSA 781



 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 201/795 (25%), Positives = 352/795 (44%), Gaps = 148/795 (18%)

Query: 85  LLQGCVYKRDMYTGQQIHARILK---NGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           LLQ C   + +   +++H++I++   +   F  N  + T     Y KC +LD A   F R
Sbjct: 1   LLQACPKVKALDVARRLHSQIVRASLDNRVFLGNHLIHT-----YGKCHSLDDAWETFER 55

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  KNV++W AIIG+  +      A+I   +M  +GV PDN  L   L            
Sbjct: 56  MSYKNVYTWTAIIGVCAQHHCHSLAIILLRQMLLEGVKPDNITLLAALT----------- 104

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
                                   MYG CG +++A++VFD M ARNV+ W +MI  +   
Sbjct: 105 ------------------------MYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAVT 140

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
            L E+A +VF  M LEG +   V+  +++ A +  + L+ G   H  +V +   ++  L 
Sbjct: 141 SL-EQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLC 199

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD--------------- 366
           +++I  Y + G LEDA  +FS MVERDI+ WN LI  Y Q G  +               
Sbjct: 200 NALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCK 259

Query: 367 -------------------------------------VVVASSIVDMYAKCERIDNAKQV 389
                                                + + +++V MY+KCE +++ + +
Sbjct: 260 PDKVTFVALLTMSNGPEALTEVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWL 319

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP------------------ 431
           F  +  R+V+ WN ++ AYA  G   +A ++   MQL+G+ P                  
Sbjct: 320 FEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADL 379

Query: 432 -----------------NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
                            ++I WNS++  + R G++ +A+ +F  +    +Q N+I+WT +
Sbjct: 380 KLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGI----LQRNVISWTAM 435

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           ++  ++ +  + A+L F  +  +G+KP+  T   AL AC    +L  GR +H   ++   
Sbjct: 436 LTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALDKGRLVHSCAVQSGN 495

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISGYAMHGLAVEALALFK 593
            +   + ++LV MY +CG+I  AK  FD +  ++  V ++AMI+ +  HG   E L   +
Sbjct: 496 DIDVSLGSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLR 555

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            +QQ+G+D    TF + L+ACS+   + EG  +   +        +      +V +  +C
Sbjct: 556 FMQQQGLDMSPATFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKC 615

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ--LEPDNPGNYVA 711
           G+LD A R +       D     +++S   + ++T  A  +   + Q  + PD P  +V 
Sbjct: 616 GSLDCA-REVFETSRRQDTICWNAIISGYAQHSQTRDAVELFHRMQQEGVAPD-PVTFVC 673

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGL---RKNPGCSWIQIG-----EELHVFVACDRSHP 763
           + +  +  G  +E       M E GL   + N  C    +G     +E   F+    + P
Sbjct: 674 ILSVCSHGGLLDEGVYAYASMVELGLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGTRP 733

Query: 764 KTEEIYATLALLGMH 778
             E + + L+    H
Sbjct: 734 AIETLTSLLSSCKSH 748



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 137/477 (28%), Positives = 243/477 (50%), Gaps = 59/477 (12%)

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
           +H+ I+++G   + N  + T LV  Y+KC++L+    LF ++  +NV SW  ++    + 
Sbjct: 284 VHSHIVESG--VSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKH 341

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           GL  KA+     MQ DGV PDN     +L  C     +  GR VHG++ +   +  + + 
Sbjct: 342 GLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADLILW 401

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           +SL++MYG+CG++E+A  VFDG++ RNV++W +M+  Y +    + A+ +F+ + L GV+
Sbjct: 402 NSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLSGVK 461

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           PT ++    L A    +ALD+G+  H+ AV +G ++D  LGS+++  Y + G + DA+  
Sbjct: 462 PTCITFLEALDACVGAEALDKGRLVHSCAVQSGNDIDVSLGSALVAMYGRCGSIRDAKAC 521

Query: 341 FSRM-VERDIVTWNLLIASYVQSGQ------------------SDVVVASS--------- 372
           F    V ++ VTW+ +IA++VQ GQ                  S    AS+         
Sbjct: 522 FDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFASTLSACSNLAD 581

Query: 373 --------------------------IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                                     +V MY KC  +D A++VF +   +D + WN +++
Sbjct: 582 LREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVFETSRRQDTICWNAIIS 641

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
            YA   ++ +A  LF++MQ EG++P+ +++  ++      G ++E    +  M  LG++P
Sbjct: 642 GYAQHSQTRDAVELFHRMQQEGVAPDPVTFVCILSVCSHGGLLDEGVYAYASMVELGLEP 701

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
               +  +I  L +     EA  F Q +   G +P+  T+T  LS+C     ++ GR
Sbjct: 702 TQDNYACVIDLLGRAGKLQEAEEFIQSL---GTRPAIETLTSLLSSCKSHGDVQRGR 755


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 190/635 (29%), Positives = 328/635 (51%), Gaps = 67/635 (10%)

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC----VFVASSLIDMYGKCGDLEE 235
           P   +L ++L A G  G     R V        FD      +F  ++L+        L++
Sbjct: 39  PPTHLLNHLLTAYGKAGRHARARRV--------FDATPHPNLFTYNALLSTLAHARLLDD 90

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG--VEPTRVSVTSILSAS 293
              +F  M  R+ V++N++I G+   G +  A+R+++ +   G  V P+R+++++++ A+
Sbjct: 91  MDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAA 150

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           + L     G+Q H   +  G  ++  +GS ++  Y+K+GL+ DA+ VF  M  +++V +N
Sbjct: 151 SALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYN 210

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
            +I   +                  +C+ ++ A+++F  +  RD + W T++  +   G 
Sbjct: 211 TMITGLL------------------RCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGL 252

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK--------------- 453
             +A   F +M+ +GI+ +  ++ S++     L  L  G+   A                
Sbjct: 253 ESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSA 312

Query: 454 --DMFLQMQSLGVQP-----------NLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             DM+ + +S  ++P           N+I+WT LI G  QN C  EA+  F EM   GI 
Sbjct: 313 LVDMYSKCRS--IKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P   T+   +S+C ++ASL  G   H   +   L     +  +LV +Y KCG+I  A R+
Sbjct: 371 PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRL 430

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           FD     +   + A+++GYA  G A E + LF+ +  K + PD +TF  +L+ACS AG V
Sbjct: 431 FDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFV 490

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            +G   F  M  DH + P  +H+ C+++L SR G L EA   I  MP  PDA   G+LLS
Sbjct: 491 EKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLS 550

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C    + E+ ++ +E+LL+++P NP +YV L + +A  G WN+V+Q+R  M+++ ++K 
Sbjct: 551 ACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKE 610

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           PGCSWI+   ++H+F A D+SHP ++ IY  L  L
Sbjct: 611 PGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWL 645



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 232/466 (49%), Gaps = 56/466 (12%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK------------------------- 128
           D   G+Q H +IL+ G  F  N +V + LV  YAK                         
Sbjct: 155 DRALGRQFHCQILRLG--FGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTM 212

Query: 129 ------CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
                 C  ++ A RLF  +  ++  +W  ++    + GL  +AL  F  M+  G++ D 
Sbjct: 213 ITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQ 272

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
           +   ++L ACGAL  +  G+ +H Y+++  +D  VFV S+L+DMY KC  ++ A   F  
Sbjct: 273 YTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRR 332

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  +N+++W ++IVGY QNG +EEA+RVF EM  +G++P   ++ S++S+ ANL +L+EG
Sbjct: 333 MSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEG 392

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
            Q H +A+++G+     + ++++  Y K G +EDA  +F  M+  D V+W  L+  Y Q 
Sbjct: 393 AQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQF 452

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G++               E ID  +++    +  D V +  +L+A +  G   +    F+
Sbjct: 453 GRAK--------------ETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFH 498

Query: 423 QMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
            MQ + GI P    +  +I  + R+G++ EA++   QM    + P+ I W TL+S     
Sbjct: 499 SMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMP---MHPDAIGWGTLLSACRLR 555

Query: 482 SCGNEAILFFQEMLETGIK-PSTTTITCALSAC----TDVASLRNG 522
                     + +LE   + P++  + C++ A       VA LR G
Sbjct: 556 GDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRG 601



 Score =  169 bits (429), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 226/532 (42%), Gaps = 90/532 (16%)

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ 174
           N +    L+   A    LD    LF  +  ++  S+ A+I      G   +A+  +  + 
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 175 EDG--VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
             G  V P    +  ++ A  ALG    GR  H  +L++GF    FV S L+ MY K G 
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGL 190

Query: 233 LEEARKVFDGMIARNVVAWNSMI-------------------------------VGYVQN 261
           + +A++VFD M  +NVV +N+MI                                G+ QN
Sbjct: 191 IGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQN 250

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           GL  +A+  F  M  +G+   + +  SIL+A   L AL++GKQ HA  +    + +  +G
Sbjct: 251 GLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVG 310

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD--------------- 366
           S++++ YSK   ++ AE  F RM  ++I++W  LI  Y Q+G S+               
Sbjct: 311 SALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 367 -------------------------------------VVVASSIVDMYAKCERIDNAKQV 389
                                                + V++++V +Y KC  I++A ++
Sbjct: 371 PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRL 430

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F+ ++  D V W  L+  YA  GR+ E   LF +M  + + P+ +++  V+    R G +
Sbjct: 431 FDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFV 490

Query: 450 NEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
            +    F  MQ   G+ P    +T +I   +++    EA  F ++M    + P       
Sbjct: 491 EKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQM---PMHPDAIGWGT 547

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            LSAC     +  G+     L+  D   P   V  L  M+A  GN +Q  ++
Sbjct: 548 LLSACRLRGDMEIGQWAAENLLEIDPQNPASYVL-LCSMHATKGNWNQVAQL 598



 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 167/308 (54%), Gaps = 4/308 (1%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           +A++    M+ +   I    +G +L  C     +  G+QIHA I++    +  N +V + 
Sbjct: 255 QALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT--HYDDNVFVGSA 312

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           LV  Y+KC ++  A   F R+  KN+ SW A+I    + G SE+A+  F EMQ DG+ PD
Sbjct: 313 LVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
           +F L +V+ +C  L  +  G   H   L  G    + V+++L+ +YGKCG +E+A ++FD
Sbjct: 373 DFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M+  + V+W +++ GY Q G  +E I +F +M  + V+P  V+   +LSA +    +++
Sbjct: 433 EMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEK 492

Query: 302 G-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASY 359
           G    H++   +G+   +   + +I+ YS+ G L++AE    +M +  D + W  L+++ 
Sbjct: 493 GCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSAC 552

Query: 360 VQSGQSDV 367
              G  ++
Sbjct: 553 RLRGDMEI 560


>gi|30103011|gb|AAP21424.1| putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
 gi|222626012|gb|EEE60144.1| hypothetical protein OsJ_13038 [Oryza sativa Japonica Group]
 gi|374087691|gb|AEY82646.1| chloroplast ALBL [Oryza sativa Japonica Group]
          Length = 859

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 206/665 (30%), Positives = 345/665 (51%), Gaps = 25/665 (3%)

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
           ETKL+  ++    L  A  +F  +  +++ +W+A+IG     G+    L   V M E+GV
Sbjct: 85  ETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEEGV 144

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF---VASSLIDMYGKCGDLEE 235
            PD F++  +L+AC     +  GRA+H   ++ GF G V    V +S++ MY KCGDL  
Sbjct: 145 LPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGW 204

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           ARKVFD M+ R++  WNSMI GY ++   EEA  +   M  EG +P  V+  +++S+ A 
Sbjct: 205 ARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYAR 264

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
              LD   +       +G+  D V  +S+++ +  +   ++A   F RM    +    + 
Sbjct: 265 FGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMS 324

Query: 356 IASYVQSGQS---------------------DVVVASSIVDMYAKCERIDNAKQVFNSII 394
           IA  + +  S                     +V+  +S+VDMYAKC  I  A ++F+ I 
Sbjct: 325 IACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIP 384

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
            +D+  WN++++ YA  G  G+A  LF +M+  G+  N+I+WN++I G++RNG    A +
Sbjct: 385 DKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFE 444

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F  M+S GV+ +  TW  LI+G   N   + AI  F++M     +P   TI   + A T
Sbjct: 445 LFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFT 504

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
           ++ +    R IH  +  H+L L   I  +L++ Y+K GN+  A  VFD+  S+ +  +N 
Sbjct: 505 NLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNC 564

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           +I  + +HG   EAL LF  ++Q+G+ PD  T   ++ A    G V+EG + F  M +D+
Sbjct: 565 IILAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDY 624

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            + P ++H+  +V+LL R G L EA  +I  MP  P++ +  + L+  V      LA   
Sbjct: 625 NITPELDHYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHGNVRLAHLA 684

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           +  L  ++P +P      S+    +G+  +V +     K + L +   CS I+I  +++V
Sbjct: 685 ARELSAIDPGDPRVQRLGSSLQDLTGKTVDVPEEMTPNKGRNLDEVESCS-IEIRNKVYV 743

Query: 755 FVACD 759
           F   D
Sbjct: 744 FSNGD 748



 Score =  169 bits (428), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 207/481 (43%), Gaps = 66/481 (13%)

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA-------- 370
           V  + +I  +S  G L DA  VF  M  RD++ W+ +I +Y   G    V+A        
Sbjct: 83  VAETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEE 142

Query: 371 ---------SSIVDMYAKCERIDNAKQ------------------VFNSIIL-------- 395
                    + I+   A  E ++  +                   V NS+++        
Sbjct: 143 GVLPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDL 202

Query: 396 ------------RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
                       RD+  WN+++  Y       EA  L   M+ EG  P +++WN++I  +
Sbjct: 203 GWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSY 262

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            R G ++ A ++  QM+  GV P+++TWT+L+SG       +EA+  F  M   G++P+ 
Sbjct: 263 ARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNG 322

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            +I CA+SAC  +  L   + +H + I+           SLVDMYAKCG I  A R+F  
Sbjct: 323 MSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSG 382

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
            P K++  +N+MISGYA  G   +A  LF  ++  G+  + IT+  +++     G     
Sbjct: 383 IPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERA 442

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC---DPD----AHIIG 676
            ELF  M   H VK     +  ++      G  D A+R+   M      PD      II 
Sbjct: 443 FELF-QMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIP 501

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +  +        E+   I  H L+L+        AL NAY+ SG       V D+   + 
Sbjct: 502 AFTNLVASWKVREIHACIFHHNLELDGKIAN---ALINAYSKSGNLASACAVFDMHSSRN 558

Query: 737 L 737
           +
Sbjct: 559 I 559



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           ++IHA I  +      +  +   L+  Y+K   L  A  +F     +N+ SW  II  + 
Sbjct: 513 REIHACIFHHN--LELDGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHV 570

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG-----FGRAVHGYVLKVGF 213
             G   +AL  F +M+++GV PD+  L  V+KA G  G V      F    + Y +    
Sbjct: 571 LHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPEL 630

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG 262
           D      ++++D+ G+ G L+EA ++ D M +  N   W++ +   V +G
Sbjct: 631 DH----YAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHG 676


>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
 gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
          Length = 917

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 206/756 (27%), Positives = 365/756 (48%), Gaps = 97/756 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I +  +  +  EA++L   M+          Y   +  C +   M  G+ IH+++
Sbjct: 171 SWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQV 230

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           L++G  F  +  V   +V  Y KC +L+ A  +F R+   N  SW AI+    + G   +
Sbjct: 231 LEDG--FESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVE 288

Query: 166 ALIGFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
           AL  F  MQ + G++PD      +L AC +   + FG  +H  +L+ G+D  + V + ++
Sbjct: 289 ALWYFQRMQLQGGITPDKVTFITILNACSSPATLTFGELLHECILQCGYDTHLIVGNCIM 348

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
            MY  CG ++ A   F  M+ R+ ++WN++I G+ Q G  +EA+ +F  M  EG+ P + 
Sbjct: 349 TMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKF 408

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +  SI+  +A +    E K    + V +G+ELD  L S++IN +S+ G + +A  +F  M
Sbjct: 409 TFISIIDGTARMQ---EAKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDM 465

Query: 345 VERDIVTWN--------------------------------------------------- 353
            +RDIV W                                                    
Sbjct: 466 KDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGK 525

Query: 354 LLIASYVQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
           L+ A  ++ G  +   V +++++MYAKC  ++ A +VF+    +++V WNT+ AAY    
Sbjct: 526 LIHAHAIERGFAASPAVGNALINMYAKCGCLEEADRVFHQC-GKNLVSWNTIAAAYVQRD 584

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILG------------------------------ 442
           +  EA +LF +MQLEG+  + +S+ +V+ G                              
Sbjct: 585 KWREALQLFQEMQLEGLKADKVSFVTVLNGCSSASEGRKIHNILLETGMESDHIVSTALL 644

Query: 443 --FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             +  +  ++EA  +F +M+      ++++W  +I+G  ++    EAI  FQ M   G+ 
Sbjct: 645 NMYTASKSLDEASRIFSRMEF----RDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVA 700

Query: 501 PSTTTITCALSA--CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           P   +    L+A   +  +SL+  R +   +        T +  ++V M+ + G + +A+
Sbjct: 701 PDKISFVTVLNAFSGSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEAR 760

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           R F+    ++   +N +++ +A HG   +AL LF+ +QQ+   PDSIT  ++L+ACSH G
Sbjct: 761 RAFERIRERDAASWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACSHGG 820

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           L+ EG   F  M  +  +  S EH+GCVV+LL+R G LD+A  ++  MP      +  +L
Sbjct: 821 LIEEGYHHFTSMGREFGIAGSQEHYGCVVDLLARAGRLDQAEELLRKMPVPASYVLWMTL 880

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
           LS C    + + A+ + E +++L+P  P  YV LS+
Sbjct: 881 LSACKVQGDEKRAKRVGERVMELDPRRPAAYVVLSS 916



 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 200/669 (29%), Positives = 329/669 (49%), Gaps = 100/669 (14%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL  C  K  +  G+ +H+R+      F R++ V+   +  Y KC  ++ A  +F  L  
Sbjct: 8   LLGLCAKKSAIAEGRFVHSRV--EASEFRRDDLVQNATIHMYGKCGCVEDAVSVFQSLDH 65

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
            +  SW +++    R G  ++A   F  M+  G++PD      VL  C A+G +  G+ +
Sbjct: 66  PSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSAIGDLSRGKLL 125

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HG+VL+ G +  V V +SLI MYGKCG +E+AR+VFD +  ++VV+W SMI+ YVQ+   
Sbjct: 126 HGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHDRC 185

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
            EA+ +F+ M   GV P R++  + +SA A+++++ +GK  H+  + +G E D V+  +I
Sbjct: 186 VEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAI 245

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------------- 363
           +N Y K G LEDA  VF RM   + V+WN ++A+  Q G                     
Sbjct: 246 VNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGITPD 305

Query: 364 --------------------------------QSDVVVASSIVDMYAKCERIDNAKQVFN 391
                                            + ++V + I+ MY+ C RIDNA   F+
Sbjct: 306 KVTFITILNACSSPATLTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFS 365

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG--------- 442
           +++ RD + WNT+++ +A  G   EA  LF +M  EGI+P+  ++ S+I G         
Sbjct: 366 TMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTARMQEAKI 425

Query: 443 --------------FL---------RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
                         FL         R G + EA+ +F  M+      +++ WT++IS   
Sbjct: 426 LSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMK----DRDIVMWTSIISSYV 481

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           Q+   ++A+   + M   G+  +  T+  AL+AC  + +L  G+ IH + I         
Sbjct: 482 QHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHAHAIERGFAASPA 541

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           +  +L++MYAKCG + +A RVF     K L  +N + + Y       EAL LF+ +Q +G
Sbjct: 542 VGNALINMYAKCGCLEEADRVFH-QCGKNLVSWNTIAAAYVQRDKWREALQLFQEMQLEG 600

Query: 600 IDPDSITFTNILNACSHA--GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
           +  D ++F  +LN CS A  G     + L  GM SDH V  ++      +N+ +   +LD
Sbjct: 601 LKADKVSFVTVLNGCSSASEGRKIHNILLETGMESDHIVSTAL------LNMYTASKSLD 654

Query: 658 EALRVILTM 666
           EA R+   M
Sbjct: 655 EASRIFSRM 663



 Score =  273 bits (698), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 190/721 (26%), Positives = 337/721 (46%), Gaps = 98/721 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L GC    D+  G+ +H  +L+ G    RN  V T L+  Y KC  ++ A R+F +L +
Sbjct: 109 VLDGCSAIGDLSRGKLLHGFVLEAG--LERNVMVGTSLIKMYGKCGCVEDARRVFDKLAL 166

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++V SW ++I    +     +AL  F  M+  GV P+       + AC  +  +  G+ +
Sbjct: 167 QDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLI 226

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H  VL+ GF+  V V+ ++++MYGKCG LE+AR+VF+ M   N V+WN+++    Q+G  
Sbjct: 227 HSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCC 286

Query: 265 EEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
            EA+  F  M L+ G+ P +V+  +IL+A ++   L  G+  H   +  G +   ++G+ 
Sbjct: 287 VEALWYFQRMQLQGGITPDKVTFITILNACSSPATLTFGELLHECILQCGYDTHLIVGNC 346

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------------- 363
           I+  YS  G +++A   FS MVERD ++WN +I+ + Q+G                    
Sbjct: 347 IMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPD 406

Query: 364 -----------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
                                        + DV + S++++M+++   +  A+ +F+ + 
Sbjct: 407 KFTFISIIDGTARMQEAKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMK 466

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW------------------ 436
            RD+V+W +++++Y   G S +A      M+LEG+  N  +                   
Sbjct: 467 DRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKL 526

Query: 437 -----------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
                            N++I  + + G + EA  +F Q        NL++W T+ +   
Sbjct: 527 IHAHAIERGFAASPAVGNALINMYAKCGCLEEADRVFHQ-----CGKNLVSWNTIAAAYV 581

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           Q     EA+  FQEM   G+K    +    L+ C+   S   GR IH  L+   +     
Sbjct: 582 QRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCS---SASEGRKIHNILLETGMESDHI 638

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           + T+L++MY    ++ +A R+F     +++  +NAMI+G A HGL+ EA+ +F+ +Q +G
Sbjct: 639 VSTALLNMYTASKSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEG 698

Query: 600 IDPDSITFTNILNACSHAGLVN-EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           + PD I+F  +LNA S +   + +   L   + SD   +        +V++  R G L E
Sbjct: 699 VAPDKISFVTVLNAFSGSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAE 758

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           A R    +  + DA     +++   +  E E A  +    +Q E   P +   +S   A 
Sbjct: 759 ARRAFERIR-ERDAASWNVIVTAHAQHGEVEQALKLFRR-MQQESSRPDSITLVSVLSAC 816

Query: 719 S 719
           S
Sbjct: 817 S 817



 Score =  149 bits (376), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 194/406 (47%), Gaps = 36/406 (8%)

Query: 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
           + D +V ++ + MY KC  +++A  VF S+     V WN+LLAA+A  G+  +A ++F +
Sbjct: 34  RRDDLVQNATIHMYGKCGCVEDAVSVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQR 93

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL--------------- 468
           M+L+G++P+ I++ +V+ G    G ++  K +   +   G++ N+               
Sbjct: 94  MKLQGLAPDRITFVTVLDGCSAIGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGC 153

Query: 469 ----------------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
                           ++WT++I    Q+    EA+  F  M  +G+ P+  T   A+SA
Sbjct: 154 VEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISA 213

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C  V S+ +G+ IH  ++         +  ++V+MY KCG++  A+ VF+  P      +
Sbjct: 214 CAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSW 273

Query: 573 NAMISGYAMHGLAVEALALFKNLQ-QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           NA+++    HG  VEAL  F+ +Q Q GI PD +TF  ILNACS    +  G EL     
Sbjct: 274 NAIVAACTQHGCCVEALWYFQRMQLQGGITPDKVTFITILNACSSPATLTFG-ELLHECI 332

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
                   +    C++ + S CG +D A     TM  + DA    +++S   ++   + A
Sbjct: 333 LQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTM-VERDAISWNTIISGHAQAGFCDEA 391

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
            ++   +L  E   P  +  +S     + R  E   + ++M E G+
Sbjct: 392 VHLFRRMLA-EGITPDKFTFIS-IIDGTARMQEAKILSELMVESGV 435


>gi|108711657|gb|ABF99452.1| Calreticulin family protein, expressed [Oryza sativa Japonica
           Group]
          Length = 1111

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 206/665 (30%), Positives = 345/665 (51%), Gaps = 25/665 (3%)

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
           ETKL+  ++    L  A  +F  +  +++ +W+A+IG     G+    L   V M E+GV
Sbjct: 85  ETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEEGV 144

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF---VASSLIDMYGKCGDLEE 235
            PD F++  +L+AC     +  GRA+H   ++ GF G V    V +S++ MY KCGDL  
Sbjct: 145 LPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGW 204

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           ARKVFD M+ R++  WNSMI GY ++   EEA  +   M  EG +P  V+  +++S+ A 
Sbjct: 205 ARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYAR 264

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
              LD   +       +G+  D V  +S+++ +  +   ++A   F RM    +    + 
Sbjct: 265 FGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMS 324

Query: 356 IASYVQSGQS---------------------DVVVASSIVDMYAKCERIDNAKQVFNSII 394
           IA  + +  S                     +V+  +S+VDMYAKC  I  A ++F+ I 
Sbjct: 325 IACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIP 384

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
            +D+  WN++++ YA  G  G+A  LF +M+  G+  N+I+WN++I G++RNG    A +
Sbjct: 385 DKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFE 444

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F  M+S GV+ +  TW  LI+G   N   + AI  F++M     +P   TI   + A T
Sbjct: 445 LFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFT 504

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
           ++ +    R IH  +  H+L L   I  +L++ Y+K GN+  A  VFD+  S+ +  +N 
Sbjct: 505 NLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNC 564

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           +I  + +HG   EAL LF  ++Q+G+ PD  T   ++ A    G V+EG + F  M +D+
Sbjct: 565 IILAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDY 624

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            + P ++H+  +V+LL R G L EA  +I  MP  P++ +  + L+  V      LA   
Sbjct: 625 NITPELDHYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHGNVRLAHLA 684

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           +  L  ++P +P      S+    +G+  +V +     K + L +   CS I+I  +++V
Sbjct: 685 ARELSAIDPGDPRVQRLGSSLQDLTGKTVDVPEEMTPNKGRNLDEVESCS-IEIRNKVYV 743

Query: 755 FVACD 759
           F   D
Sbjct: 744 FSNGD 748



 Score =  169 bits (428), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 207/481 (43%), Gaps = 66/481 (13%)

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA-------- 370
           V  + +I  +S  G L DA  VF  M  RD++ W+ +I +Y   G    V+A        
Sbjct: 83  VAETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEE 142

Query: 371 ---------SSIVDMYAKCERIDNAKQ------------------VFNSIIL-------- 395
                    + I+   A  E ++  +                   V NS+++        
Sbjct: 143 GVLPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDL 202

Query: 396 ------------RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
                       RD+  WN+++  Y       EA  L   M+ EG  P +++WN++I  +
Sbjct: 203 GWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSY 262

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            R G ++ A ++  QM+  GV P+++TWT+L+SG       +EA+  F  M   G++P+ 
Sbjct: 263 ARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNG 322

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            +I CA+SAC  +  L   + +H + I+           SLVDMYAKCG I  A R+F  
Sbjct: 323 MSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSG 382

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
            P K++  +N+MISGYA  G   +A  LF  ++  G+  + IT+  +++     G     
Sbjct: 383 IPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERA 442

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC---DPD----AHIIG 676
            ELF  M   H VK     +  ++      G  D A+R+   M      PD      II 
Sbjct: 443 FELF-QMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIP 501

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +  +        E+   I  H L+L+        AL NAY+ SG       V D+   + 
Sbjct: 502 AFTNLVASWKVREIHACIFHHNLELDGKIAN---ALINAYSKSGNLASACAVFDMHSSRN 558

Query: 737 L 737
           +
Sbjct: 559 I 559



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           ++IHA I  +      +  +   L+  Y+K   L  A  +F     +N+ SW  II  + 
Sbjct: 513 REIHACIFHHN--LELDGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHV 570

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG-----FGRAVHGYVLKVGF 213
             G   +AL  F +M+++GV PD+  L  V+KA G  G V      F    + Y +    
Sbjct: 571 LHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPEL 630

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG 262
           D      ++++D+ G+ G L+EA ++ D M +  N   W++ +   V +G
Sbjct: 631 DH----YAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHG 676


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/571 (32%), Positives = 302/571 (52%), Gaps = 51/571 (8%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L  A  VF+ +   N + WN+MI G+  +     ++ ++  M   G+ P   +   +L +
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A      EG+Q H   +  G +LD  + +S+I+ Y +   LEDA  VF R   RD+V++
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
             LI  Y   G                   I +A+++F+ I ++DVV WN +++ YA+ G
Sbjct: 134 TALITGYASRGD------------------IRSAQKLFDEIPVKDVVSWNAMISGYAETG 175

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL---- 468
              EA  LF +M    + P+  ++ +V+     +G +   + +   +   G   NL    
Sbjct: 176 CYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVN 235

Query: 469 ---------------------------ITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
                                      I+W TLI G T  +   EA+L FQEML +G  P
Sbjct: 236 ALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 295

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRH--DLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           +  T+   L AC  + ++  GR IH Y+ +    +   + + TSL+DMYAKCG+I  A +
Sbjct: 296 NDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 355

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VF+    K L  +NAMI G+AMHG A  +  LF  +++ GI+PD ITF  +L+ACSH+G+
Sbjct: 356 VFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGM 415

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           ++ G  +F  M  D+++ P +EH+GC+++LL   G   EA  +I TM  +PD  I  SLL
Sbjct: 416 LDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLL 475

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
             C      ELAE  +++L+++EP+NP +Y+ LSN YA++GRW +V+++R ++  K ++K
Sbjct: 476 KACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKK 535

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            PGCS I++   +  FV  D+ HP+  EIY 
Sbjct: 536 VPGCSSIEVDSVVFEFVVGDKFHPQNREIYG 566



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/485 (28%), Positives = 230/485 (47%), Gaps = 65/485 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC----DALDV------ 134
           LL+ C   +    GQQIH ++LK G  F  + YV T L+  Y +     DA  V      
Sbjct: 70  LLKSCAKSKTFTEGQQIHGQVLKLG--FDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSH 127

Query: 135 ---------------------ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
                                A +LF  + VK+V SW A+I      G  ++AL  F EM
Sbjct: 128 RDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEM 187

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
            +  V PD      VL AC   G +  GR VH +V   GFD  + + ++LID+Y KCG++
Sbjct: 188 MKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEV 247

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           E A  +F G+  ++V++WN++I GY    L +EA+ +F EM   G  P  V++ S+L A 
Sbjct: 248 ETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPAC 307

Query: 294 ANLDALDEGKQAHAV--AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           A+L A+D G+  H      + G+   + L +S+I+ Y+K G +E A  VF+ M+ + + +
Sbjct: 308 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS 367

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
           WN +I  +   G++D     +  D++++  +I          I  D + +  LL+A +  
Sbjct: 368 WNAMIFGFAMHGRAD-----ASFDLFSRMRKIG---------IEPDDITFVGLLSACSHS 413

Query: 412 GRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
           G       +F  M Q   ++P +  +  +I     +G   EA++M   M+   ++P+ + 
Sbjct: 414 GMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTME---MEPDGVI 470

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPST-------TTITCALSACTDVASLR--- 520
           W +L+     +     A  F Q +++  I+P         + I  +     DVA +R   
Sbjct: 471 WCSLLKACKMHGNVELAESFAQNLIK--IEPENPSSYILLSNIYASAGRWEDVARIRALL 528

Query: 521 NGRAI 525
           NG+ +
Sbjct: 529 NGKCM 533



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 132/518 (25%), Positives = 234/518 (45%), Gaps = 92/518 (17%)

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
           D L  A+ +F  ++  N   W  +I  +        +L  +V M   G+ P+++  P +L
Sbjct: 12  DGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLL 71

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM----------------------- 226
           K+C        G+ +HG VLK+GFD  ++V +SLI M                       
Sbjct: 72  KSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVV 131

Query: 227 --------YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
                   Y   GD+  A+K+FD +  ++VV+WN+MI GY + G  +EA+ +F EM    
Sbjct: 132 SYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMN 191

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V P   +  ++LSA A+  +++ G+Q H+    +G + +  + +++I+ YSK G +E A 
Sbjct: 192 VRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETAC 251

Query: 339 VVFSRMVERDIVTWNLLIASY----------------VQSGQS--DVVVAS--------- 371
            +F  +  +D+++WN LI  Y                ++SG++  DV + S         
Sbjct: 252 GLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLG 311

Query: 372 ---------------------------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                                      S++DMYAKC  I+ A QVFNS++ + +  WN +
Sbjct: 312 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAM 371

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLG 463
           +  +A  GR+  +  LF +M+  GI P+ I++  ++     +G ++  + +F  M Q   
Sbjct: 372 IFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYK 431

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA-LSACTDVASLRNG 522
           + P L  +  +I  L  +    EA    +EM+ T        I C+ L AC    ++   
Sbjct: 432 MTPKLEHYGCMIDLLGHSGLFKEA----EEMINTMEMEPDGVIWCSLLKACKMHGNVELA 487

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            +    LI+ +   P+  +  L ++YA  G      R+
Sbjct: 488 ESFAQNLIKIEPENPSSYIL-LSNIYASAGRWEDVARI 524



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 179/365 (49%), Gaps = 18/365 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++    +EA++L  EM   N +     Y  +L  C +   +  G+Q+H+ +
Sbjct: 163 SWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWV 222

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             +G  F  N  +   L+  Y+KC  ++ A  LF  L  K+V SW  +IG    + L ++
Sbjct: 223 DDHG--FDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKE 280

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK--VGFDGCVFVASSL 223
           AL+ F EM   G +P++  + +VL AC  LG +  GR +H Y+ K   G      + +SL
Sbjct: 281 ALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSL 340

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           IDMY KCGD+E A +VF+ M+ +++ +WN+MI G+  +G  + +  +F  M   G+EP  
Sbjct: 341 IDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDD 400

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDA 337
           ++   +LSA ++   LD G+      +   M  D  +   +      I+     GL ++A
Sbjct: 401 ITFVGLLSACSHSGMLDLGRH-----IFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA 455

Query: 338 EVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           E + + M +E D V W  L+ +    G  +V +A S      K E  + +  +  S I  
Sbjct: 456 EEMINTMEMEPDGVIWCSLLKACKMHG--NVELAESFAQNLIKIEPENPSSYILLSNIYA 513

Query: 397 DVVLW 401
               W
Sbjct: 514 SAGRW 518


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 224/748 (29%), Positives = 365/748 (48%), Gaps = 104/748 (13%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           ++HA  + +G  + R + +  KLV  Y+      +A+  F      + F W ++I  +  
Sbjct: 31  RVHALAVTSG-LYQRPD-LAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRTHHC 88

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF---DG- 215
                 AL     M   G  P  F  P    A   LG +G G AVH Y ++ G    DG 
Sbjct: 89  ASDFVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLVGDGD 148

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            V VASSL+ MY +CG++ +A KVF+ M  R+VVAW ++I G V+NG + E +R   EM 
Sbjct: 149 SVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMV 208

Query: 276 -LEG---VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
            L G   V P   ++ S L A   LD L+ G+  H   V  G+    ++ S++ + YSK 
Sbjct: 209 RLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKC 268

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSD-------- 366
              EDA  +F  + E+D+V+W  LI  Y + G                 Q D        
Sbjct: 269 YSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVL 328

Query: 367 ---------------------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
                                      V++ ++++ MY K E +D+A +VF  +  RD  
Sbjct: 329 SGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDAD 388

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEG------ISPNIISWNS--------------- 438
            WN ++  Y   G   +   L+ +MQL        ++ +++S  S               
Sbjct: 389 SWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRSAH 448

Query: 439 ----------------VILG-FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
                           V++G + R G+ + A  +F   +   ++ +++TW TLIS     
Sbjct: 449 CYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAK---LKGDVVTWNTLISSYAHL 505

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541
              N A+  + +ML  G+ P++TT+   +SAC ++ +L  G  IH Y+          I 
Sbjct: 506 GHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSIN 565

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
           T+L+DMYAKCG +  A+R+FD     ++  +N MISGY MHG A +AL LF  ++   I 
Sbjct: 566 TALIDMYAKCGQLGIARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIK 625

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
           P+ +TF  IL+A  H+GL+ EG ++F  M   + ++P+++H+ C+V+LL + G+L EA  
Sbjct: 626 PNGVTFLAILSALCHSGLLEEGRKVFTRM-GKYSLEPNLKHYACMVDLLGKSGHLQEAED 684

Query: 662 VILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721
           ++L MP +PD  I G+LLS C   +  E+   I++     +P+N G Y+ +SN+Y  + +
Sbjct: 685 MVLAMPIEPDGGIWGTLLSACKLHDNFEMGLRIAKKAFASDPENEGYYILISNSYGGAKK 744

Query: 722 WNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           W+E+ ++R+ MK  G++K  G S +  G
Sbjct: 745 WDEIEKLRETMKNLGVQKGVGWSAVDYG 772


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 231/795 (29%), Positives = 381/795 (47%), Gaps = 109/795 (13%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF-- 139
           +  LL+ C    ++  G+ IH  ++  G  +  + ++ T LV  Y KC  LD A ++F  
Sbjct: 63  FPSLLKACSALTNLSYGKTIHGSVVVLG--WRYDPFIATSLVNMYVKCGFLDYAVQVFDG 120

Query: 140 -----CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
                  +  ++V  W ++I    +    ++ +  F  M   GV PD F L  V+     
Sbjct: 121 WSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCK 180

Query: 195 LGWVGF----GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVV 249
            G   F    G+ +HG++L+   D   F+ ++LIDMY K G   +A +VF  +  + NVV
Sbjct: 181 EG--NFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVV 238

Query: 250 AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVA 309
            WN MIVG+  +G+ E ++ ++       V+    S T  L A +  +    G+Q H   
Sbjct: 239 LWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDV 298

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------ 363
           V  G+  D  + +S+++ YSK G++ +AE VFS +V++ +  WN ++A+Y ++       
Sbjct: 299 VKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSAL 358

Query: 364 ----------------------------------------------QSDVVVASSIVDMY 377
                                                         QS   + S+++ +Y
Sbjct: 359 DLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLY 418

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ------------ 425
           +KC    +A  VF S+  +D+V W +L++     G+  EA ++F  M+            
Sbjct: 419 SKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDI 478

Query: 426 ----------LE---------------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
                     LE               G+  N+   +S+I  + + G    A  +F  M 
Sbjct: 479 MTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMS 538

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
           +     N++ W ++IS  ++N+    +I  F  ML  GI P + +IT  L A +  ASL 
Sbjct: 539 T----ENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLL 594

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            G+++HGY +R  +   T +  +L+DMY KCG    A+ +F     K L  +N MI GY 
Sbjct: 595 KGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYG 654

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            HG  + AL+LF  +++ G  PD +TF ++++AC+H+G V EG  +F  M  D+ ++P+M
Sbjct: 655 SHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNM 714

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EH+  +V+LL R G L+EA   I  MP + D+ I   LLS     +  EL    +E LL+
Sbjct: 715 EHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLR 774

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           +EP+    YV L N Y  +G  NE +++  +MKEKGL K PGCSWI++ +  +VF +   
Sbjct: 775 MEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTNVFFSGGS 834

Query: 761 SHPKTEEIYATLALL 775
           S P   EI+  L  L
Sbjct: 835 SSPMKAEIFNVLNRL 849



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 165/586 (28%), Positives = 282/586 (48%), Gaps = 113/586 (19%)

Query: 174 QEDGVSP---DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           + DG SP     F  P++LKAC AL  + +G+ +HG V+ +G+    F+A+SL++MY KC
Sbjct: 49  KHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKC 108

Query: 231 GDLEEARKVFD-------GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           G L+ A +VFD       G+ AR+V  WNSMI GY +    +E +  F  M + GV P  
Sbjct: 109 GFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDA 168

Query: 284 VS---VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
            S   V S++    N    +EGKQ H   + N ++ D+ L +++I+ Y K GL  DA  V
Sbjct: 169 FSLSIVVSVMCKEGNFRR-EEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRV 227

Query: 341 FSRMVER-DIVTWNLLIASYVQSG------------------------------------ 363
           F  + ++ ++V WN++I  +  SG                                    
Sbjct: 228 FVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSEN 287

Query: 364 ----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                            +D  V +S++ MY+KC  +  A+ VF+ ++ + + +WN ++AA
Sbjct: 288 SGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAA 347

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK--------- 453
           YA+      A  LF  M+ + + P+  + ++VI     LG    G+   A+         
Sbjct: 348 YAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQST 407

Query: 454 ------------------DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
                             D +L  +S+  + +++ W +LISGL +N    EA+  F +M 
Sbjct: 408 STIESALLTLYSKCGCDPDAYLVFKSME-EKDMVAWGSLISGLCKNGKFKEALKVFGDMK 466

Query: 496 --ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
             +  +KP +  +T   +AC  + +LR G  +HG +I+  L L   + +SL+D+Y+KCG 
Sbjct: 467 DDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGL 526

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
              A +VF    ++ +  +N+MIS Y+ + L   ++ LF  +  +GI PDS++ T++L A
Sbjct: 527 PEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVA 586

Query: 614 CSHA-----GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
            S       G    G  L +G+ SD  +K ++      +++  +CG
Sbjct: 587 ISSTASLLKGKSLHGYTLRLGIPSDTHLKNAL------IDMYVKCG 626


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  336 bits (862), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 189/594 (31%), Positives = 324/594 (54%), Gaps = 31/594 (5%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDM--YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           + +H + +K+G          +I      + G +  AR+VFD +    +  WN+MI GY 
Sbjct: 24  KQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYS 83

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           +    +  + ++  M    ++P R +   +L       AL  GK     AV +G + +  
Sbjct: 84  RINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLF 143

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY---VQSGQSDVVV------- 369
           +  + I+ +S   L++ A  VF      ++VTWN++++ Y    Q  +S ++        
Sbjct: 144 VQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRG 203

Query: 370 ----ASSIVDMYAKCERI---DNAKQVFN----SIILRDVVLWNTLLAAYADLGRSGEAS 418
               + ++V M + C ++   +  K ++      I+ R+++L N L+  +A  G   EA 
Sbjct: 204 VSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQ 263

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
            +F  M+    + ++ISW S++ GF   GQ++ A+  F Q+     + + ++WT +I G 
Sbjct: 264 SVFDNMK----NRDVISWTSIVTGFANIGQIDLARKYFDQIP----ERDYVSWTAMIDGY 315

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
            + +   EA+  F+EM  + +KP   T+   L+AC  + +L  G  +  Y+ ++ +   T
Sbjct: 316 LRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDT 375

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            +  +L+DMY KCGN+ +AK+VF     K+   + AMI G A++G   EALA+F N+ + 
Sbjct: 376 FVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEA 435

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
            I PD IT+  +L AC+HAG+V +G   F+ M   H +KP++ H+GC+V+LL R G L+E
Sbjct: 436 SITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEE 495

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           A  VI+ MP  P++ + GSLL  C      +LAE  ++ +L+LEP+N   YV L N YAA
Sbjct: 496 AHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAA 555

Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
             RW  + QVR +M E+G++K PGCS +++   ++ FVA D+SHP+++EIYA L
Sbjct: 556 CKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKL 609



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 139/526 (26%), Positives = 239/526 (45%), Gaps = 75/526 (14%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA--LDVASRLFCRL 142
           LL+ C   + MY  +QIH+  +K G   + +   + +++ F    ++  +  A ++F  +
Sbjct: 13  LLEKC---KSMYQLKQIHSHTIKMG--LSSDPLFQKRVIAFCCAHESGKMIYARQVFDAI 67

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
               +F W  +I    R+   +  +  ++ M    + PD F  P +LK       + +G+
Sbjct: 68  PQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGK 127

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            +  + +K GFD  +FV  + I M+  C  ++ ARKVFD   A  VV WN M+ GY +  
Sbjct: 128 VLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVK 187

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING--MELDNVL 320
             +++  +F EM   GV P  V++  +LSA + L  L+ GK  H    ING  +E + +L
Sbjct: 188 QFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGK--HIYKYINGGIVERNLIL 245

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
            + +I+ ++  G +++A+ VF  M  RD+++W                  +SIV  +A  
Sbjct: 246 ENVLIDMFAACGEMDEAQSVFDNMKNRDVISW------------------TSIVTGFANI 287

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS----- 435
            +ID A++ F+ I  RD V W  ++  Y  + R  EA  LF +MQ+  + P+  +     
Sbjct: 288 GQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSIL 347

Query: 436 -------------W-----------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
                        W                 N++I  + + G + +AK +F +M      
Sbjct: 348 TACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMH----H 403

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            +  TWT +I GL  N  G EA+  F  M+E  I P   T    L ACT    +  G++ 
Sbjct: 404 KDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSF 463

Query: 526 H-GYLIRHDLCLPTPIVTS---LVDMYAKCGNIHQAKRVFDISPSK 567
                ++H +    P VT    +VD+  + G + +A  V    P K
Sbjct: 464 FISMTMQHGI---KPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVK 506



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 24/242 (9%)

Query: 23  LKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY 82
           + L++ +  ++ E D      Y S+   I    +  +  EA+ L  EM+  N +      
Sbjct: 290 IDLARKYFDQIPERD------YVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTM 343

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
             +L  C +   +  G+ +   I KN      + +V   L+  Y KC  +  A ++F  +
Sbjct: 344 VSILTACAHLGALELGEWVKTYIDKNS--IKNDTFVGNALIDMYFKCGNVGKAKKVFKEM 401

Query: 143 RVKNVFSWAA-IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
             K+ F+W A I+GL    G  E+AL  F  M E  ++PD      VL AC   G V  G
Sbjct: 402 HHKDKFTWTAMIVGLAIN-GHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKG 460

Query: 202 RAV-------HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNS 253
           ++        HG    V   GC      ++D+ G+ G LEEA +V   M +  N + W S
Sbjct: 461 QSFFISMTMQHGIKPNVTHYGC------MVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGS 514

Query: 254 MI 255
           ++
Sbjct: 515 LL 516


>gi|218193953|gb|EEC76380.1| hypothetical protein OsI_13992 [Oryza sativa Indica Group]
          Length = 822

 Score =  336 bits (862), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 206/665 (30%), Positives = 345/665 (51%), Gaps = 25/665 (3%)

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
           ETKL+  ++    L  A  +F  +  +++ +W+A+IG     G+    L   V M E+GV
Sbjct: 48  ETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEEGV 107

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF---VASSLIDMYGKCGDLEE 235
            PD F++  +L+AC     +  GRA+H   ++ GF G V    V +S++ MY KCGDL  
Sbjct: 108 LPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGW 167

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           ARKVFD M+ R++  WNSMI GY ++   EEA  +   M  EG +P  V+  +++S+ A 
Sbjct: 168 ARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYAR 227

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
              LD   +       +G+  D V  +S+++ +  +   ++A   F RM    +    + 
Sbjct: 228 FGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMS 287

Query: 356 IASYVQSGQS---------------------DVVVASSIVDMYAKCERIDNAKQVFNSII 394
           IA  + +  S                     +V+  +S+VDMYAKC  I  A ++F+ I 
Sbjct: 288 IACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIP 347

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
            +D+  WN++++ YA  G  G+A  LF +M+  G+  N+I+WN++I G++RNG    A +
Sbjct: 348 DKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFE 407

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F  M+S GV+ +  TW  LI+G   N   + AI  F++M     +P   TI   + A T
Sbjct: 408 LFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFT 467

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
           ++ +    R IH  +  H+L L   I  +L++ Y+K GN+  A  VFD+  S+ +  +N 
Sbjct: 468 NLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNC 527

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           +I  + +HG   EAL LF  ++Q+G+ PD  T   ++ A    G V+EG + F  M +D+
Sbjct: 528 IILAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDY 587

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            + P ++H+  +V+LL R G L EA  +I  MP  P++ +  + L+  V      LA   
Sbjct: 588 NITPELDHYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHGNVRLAHLA 647

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           +  L  ++P +P      S+    +G+  +V +     K + L +   CS I+I  +++V
Sbjct: 648 ARELSAIDPGDPRVQRLGSSLQDLTGKTVDVPEEMTPNKGRNLDEVESCS-IEIRNKVYV 706

Query: 755 FVACD 759
           F   D
Sbjct: 707 FSNGD 711



 Score =  169 bits (428), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 207/481 (43%), Gaps = 66/481 (13%)

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA-------- 370
           V  + +I  +S  G L DA  VF  M  RD++ W+ +I +Y   G    V+A        
Sbjct: 46  VAETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEE 105

Query: 371 ---------SSIVDMYAKCERIDNAKQ------------------VFNSIIL-------- 395
                    + I+   A  E ++  +                   V NS+++        
Sbjct: 106 GVLPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDL 165

Query: 396 ------------RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
                       RD+  WN+++  Y       EA  L   M+ EG  P +++WN++I  +
Sbjct: 166 GWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSY 225

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            R G ++ A ++  QM+  GV P+++TWT+L+SG       +EA+  F  M   G++P+ 
Sbjct: 226 ARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNG 285

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            +I CA+SAC  +  L   + +H + I+           SLVDMYAKCG I  A R+F  
Sbjct: 286 MSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSG 345

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
            P K++  +N+MISGYA  G   +A  LF  ++  G+  + IT+  +++     G     
Sbjct: 346 IPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERA 405

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC---DPD----AHIIG 676
            ELF  M   H VK     +  ++      G  D A+R+   M      PD      II 
Sbjct: 406 FELF-QMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIP 464

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +  +        E+   I  H L+L+        AL NAY+ SG       V D+   + 
Sbjct: 465 AFTNLVASWKVREIHACIFHHNLELDGKIAN---ALINAYSKSGNLASACAVFDMHSSRN 521

Query: 737 L 737
           +
Sbjct: 522 I 522



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           ++IHA I  +      +  +   L+  Y+K   L  A  +F     +N+ SW  II  + 
Sbjct: 476 REIHACIFHHN--LELDGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHV 533

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG-----FGRAVHGYVLKVGF 213
             G   +AL  F +M+++GV PD+  L  V+KA G  G V      F    + Y +    
Sbjct: 534 LHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPEL 593

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG 262
           D      ++++D+ G+ G L+EA ++ D M +  N   W++ +   V +G
Sbjct: 594 DH----YAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHG 639


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  336 bits (862), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 176/484 (36%), Positives = 289/484 (59%), Gaps = 28/484 (5%)

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           G   H   V +G E D+ + +S+I+ Y+    L  A+ +FS   +RD+V+WN +I  YV+
Sbjct: 19  GLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVK 78

Query: 362 SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
            G+                  + + + VF+ ++ RDV+ WNT++  YA +G+  EA RLF
Sbjct: 79  RGE------------------MGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLF 120

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
            +M       N++SWNS++ GF++ G + EA  +F +M    V    ++W ++++   Q 
Sbjct: 121 DEMP----ERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDV----VSWNSMLACYAQC 172

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541
              NEA+  F +M   G+KP+  T+   LSAC  + +L  G  +H Y+  + + + + + 
Sbjct: 173 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 232

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
           T+LVDMYAKCG I  A +VF+   SK++  +N +I+G A+HG   EA  LFK +++  ++
Sbjct: 233 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVE 292

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
           P+ ITF  +L+ACSHAG+V+EG +L   M S + ++P +EH+ CV++LL+R G L+EA+ 
Sbjct: 293 PNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAME 352

Query: 662 VILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721
           +I TMP +P+   +G+LL  C      EL E + + L+ L+P + G Y+ LSN YAA+ +
Sbjct: 353 LIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKK 412

Query: 722 WNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
           W++  +VR++MK  G+ K PG S I++   +H FVA D SHP++ +IY  L  +  H RL
Sbjct: 413 WDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEI--HTRL 470

Query: 782 VSKV 785
            S +
Sbjct: 471 KSAI 474



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 199/432 (46%), Gaps = 67/432 (15%)

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
           P V+KAC       FG  VH +V+K GF+   ++ +SLI +Y    DL  A+++F     
Sbjct: 4   PFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSD 63

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           R+VV+WN+MI GYV+ G       VF  M    V    +S  +I++  A +  +DE K+ 
Sbjct: 64  RDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDV----ISWNTIINGYAIVGKIDEAKR- 118

Query: 306 HAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
               + + M   N++  +S+++ + K G +E+A  +FS M  RD+V+WN ++A Y Q G+
Sbjct: 119 ----LFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGK 174

Query: 365 S----------------------------------------------------DVVVASS 372
                                                                + +V ++
Sbjct: 175 PNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA 234

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           +VDMYAKC +I  A QVFN++  +DV+ WNT++A  A  G   EA +LF +M+   + PN
Sbjct: 235 LVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPN 294

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
            I++ +++      G ++E + +   M  S G++P +  +  +I  L +     EA+   
Sbjct: 295 DITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELI 354

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
             M    ++P+ + +   L  C    +   G  +   LI    C     +  L ++YA  
Sbjct: 355 GTM---PMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYIL-LSNIYAAA 410

Query: 552 GNIHQAKRVFDI 563
                A++V ++
Sbjct: 411 KKWDDARKVRNL 422



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 189/402 (47%), Gaps = 38/402 (9%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  +++ C      + G  +H  ++K+G  F  + Y+   L+  YA    L  A +LF  
Sbjct: 3   YPFVIKACNESSVTWFGLLVHTHVVKSG--FECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGF 200
              ++V SW A+I      G  ++  +G   M  D  V  D      ++     +G +  
Sbjct: 61  CSDRDVVSWNAMID-----GYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDE 115

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
            + +   + +          +S++  + KCG++EEA  +F  M  R+VV+WNSM+  Y Q
Sbjct: 116 AKRLFDEMPERNL----VSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQ 171

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            G   EA+ +F +M   GV+PT  +V S+LSA A+L ALD+G   H     N +E+++++
Sbjct: 172 CGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIV 231

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G+++++ Y+K G +  A  VF+ M  +D++ WN +IA     G                 
Sbjct: 232 GTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGH---------------- 275

Query: 381 ERIDNAKQVFNSIILRDV----VLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIIS 435
             +  A+Q+F  +    V    + +  +L+A +  G   E  +L   M    GI P +  
Sbjct: 276 --VKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 333

Query: 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
           ++ VI    R G + EA ++   + ++ ++PN      L+ G
Sbjct: 334 YDCVIDLLARAGLLEEAMEL---IGTMPMEPNPSALGALLGG 372



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 119/279 (42%), Gaps = 21/279 (7%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA+ L  +M+    +        LL  C +   +  G  +H  I  N +    N  V T 
Sbjct: 177 EALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYI--NDNRIEVNSIVGTA 234

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           LV  YAKC  + +A+++F  +  K+V +W  II      G  ++A   F EM+E  V P+
Sbjct: 235 LVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPN 294

Query: 182 NFVLPNVLKACGALGWVGFGRAV-------HGYVLKVGFDGCVFVASSLIDMYGKCGDLE 234
           +     +L AC   G V  G+ +       +G   KV    CV      ID+  + G LE
Sbjct: 295 DITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCV------IDLLARAGLLE 348

Query: 235 EARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSA 292
           EA ++   M +  N  A  +++ G   +G  E    V   +  L+     R  + S + A
Sbjct: 349 EAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYA 408

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
           +A     D+ ++   +  +NG  +  V G S+I     V
Sbjct: 409 AAK--KWDDARKVRNLMKVNG--ISKVPGVSVIELKGMV 443



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 13/187 (6%)

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           T    + AC + +    G  +H ++++      + IV SL+ +YA   ++  AK++F + 
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
             +++  +NAMI GY   G       +F  +  +    D I++  I+N  +  G ++E  
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCR----DVISWNTIINGYAIVGKIDEAK 117

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL---ST 681
            LF     D   + ++  +  +++   +CGN++EA  +   MPC  D     S+L   + 
Sbjct: 118 RLF-----DEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCR-DVVSWNSMLACYAQ 171

Query: 682 CVKSNET 688
           C K NE 
Sbjct: 172 CGKPNEA 178


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 223/735 (30%), Positives = 373/735 (50%), Gaps = 110/735 (14%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G  +HA ++K G  F+   Y+  KL++ Y                             LN
Sbjct: 40  GNVLHAHLIKTG--FSSQRYIAIKLLILY-----------------------------LN 68

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
           CR    + A I  +  + DG    + V+ N    C    +V +G  V   +L   FD   
Sbjct: 69  CR----KFAEIDQIVKEFDG---SDLVVSN----CMISAYVQWGNLVQARLL---FDEMP 114

Query: 218 ----FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
                  S+LI    K G +EE+   F+    +NVV+W + I G+V+NGLN EA+++F+ 
Sbjct: 115 ERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFR 174

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           +   GV P  V+ TS++ A   L     G     + V  G E    + +S+I    ++G 
Sbjct: 175 LLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGE 234

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKC 380
           ++ A  VF RM +RD+V+W  ++ +YV++G             + + +  S+++  Y++ 
Sbjct: 235 IDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQS 294

Query: 381 ERIDNAKQVFNSI---------------------------------------ILRDVVLW 401
              + A ++F+ +                                       I +DV + 
Sbjct: 295 GYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIG 354

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
           ++L+  Y   G+  +  RL + + LE    N++ WNS++ G+  NG++ E +++F  +  
Sbjct: 355 SSLIDLYCKCGKPDDG-RLVFDLILE---KNVVCWNSMVGGYSINGRLEEXEELFELIP- 409

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
              + N  +W T+J+G  +N    + +  F  +L +G  P+ +T +  L AC  +ASL  
Sbjct: 410 ---EKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDK 466

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G  +HG +I+  +     + T+L DMYAKCG+I  +K+VF+  P K    +  MI G A 
Sbjct: 467 GMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAE 526

Query: 582 HGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            G AVE+L LF+ +++   + P+ +   ++L ACSH GLV++GL  F  M   + +KP  
Sbjct: 527 SGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKG 586

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           +H+ CVV+LLSR G L EA   I T+P  P+A+   +LLS C K  + ++AE  ++ L Q
Sbjct: 587 KHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQ 646

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           L  +N   YV LSN YA++GRW +VS +R +M+EKGL+K+ GCSW+++  ++H F + D 
Sbjct: 647 LAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFYSEDG 706

Query: 761 SHPKTEEIYATLALL 775
           SH +++EIY TL LL
Sbjct: 707 SHSQSDEIYGTLQLL 721



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 177/404 (43%), Gaps = 59/404 (14%)

Query: 275 TLEGVEPTRV------SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328
           TL  ++P +       +  S+L   +N   + +G   HA  +  G      +   ++  Y
Sbjct: 7   TLLAIDPKKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILY 66

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388
                  + + +       D+V  N +I++YVQ G                   +  A+ 
Sbjct: 67  LNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGN------------------LVQARL 108

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           +F+ +  R+ V W+ L++     GR  E+   F +   +    N++SW + I GF+RNG 
Sbjct: 109 LFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQ----NVVSWTAAISGFVRNGL 164

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLIS--------GLTQNSCGNEAILFFQEMLETGIK 500
             EA  +F ++   GV+PN +T+T+++         GL  +  G    L  +   E  + 
Sbjct: 165 NFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILG----LVVKAGFEHYLS 220

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            S + IT +L     +  +   R +   + + D+   T I    +D Y + G++ +A+R+
Sbjct: 221 VSNSLITLSLR----MGEIDLARRVFDRMEKRDVVSWTAI----LDAYVETGDLREARRI 272

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           FD  P +    ++AMI+ Y+  G A EAL LF  + Q+G  P+   F   L+A +    +
Sbjct: 273 FDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRAL 332

Query: 621 NEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           + G+ +      +G+  D  +  S+      ++L  +CG  D+ 
Sbjct: 333 SAGINIHGHVTKIGIDKDVFIGSSL------IDLYCKCGKPDDG 370


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 209/693 (30%), Positives = 351/693 (50%), Gaps = 84/693 (12%)

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ 174
           N+   T+ +  +A    ++ A +LF  +   + F W  +I      GL  +AL  +  M 
Sbjct: 59  NDPALTRALRGFADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMV 118

Query: 175 EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLE 234
             GV  D+F  P V+K+   +  +  G+ +H  V+K+ F   V+V +SLI +Y K G   
Sbjct: 119 FSGVKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSW 178

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
           +A KVF+ M  R++V+WNSMI GY+       ++ +F EM   G +P R S  S L A +
Sbjct: 179 DAEKVFEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACS 238

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
           ++ + + GK+ H  AV                                            
Sbjct: 239 HVYSPNMGKELHCHAV-------------------------------------------- 254

Query: 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
              S +++G  DV+V +SI+DMY+K   +  A+++F  II R++V WN L+  YA   R 
Sbjct: 255 --RSRIETG--DVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRV 310

Query: 415 GEASRLFYQM-QLEGISPNIISWNSVI-----------------LGFLRN---------- 446
            +A   F +M +  G+ P++I+  +++                  GFL +          
Sbjct: 311 TDAFLCFQKMSEQNGLQPDVITLINLLPACAILEGRTIHGYAMRRGFLPHIVLDTALIDM 370

Query: 447 ----GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
               GQ+  A+ +F ++     + NLI+W ++I+   QN     A+  FQ++ ++ + P 
Sbjct: 371 YGEWGQLKSAEVIFDRI----AEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPD 426

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
           +TTI   L A  +  SL  GR IH Y+++      T I+ SLV MYA CG++  A++ F+
Sbjct: 427 STTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFN 486

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               K++  +N++I  YA+HG    ++ LF  +    +DP+  TF ++L ACS +G+V+E
Sbjct: 487 HVLLKDVVSWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAACSISGMVDE 546

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G E F  M  ++ + P +EH+G +++L+ R GN   A R I  MP  P A I GSLL+  
Sbjct: 547 GWEYFESMKREYGIDPGIEHYGYMLDLIGRTGNFSSAKRFIREMPFLPTARIWGSLLNAS 606

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
              N+  +AE+ +E + ++E DN G YV L N YA + RW +V++++ +M+ KG+ +   
Sbjct: 607 RNHNDITVAEFAAEQIFKMEHDNTGCYVLLLNMYAEARRWEDVNRIKLLMESKGISRTSS 666

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            S ++   + HV    DRSH +T +IY  L ++
Sbjct: 667 RSTVEAKSKTHVLTNGDRSHVETNKIYEVLDIV 699



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 225/452 (49%), Gaps = 61/452 (13%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G++IHA ++K    F  + YV   L+  Y K      A ++F  +  +++ SW ++I   
Sbjct: 145 GKKIHAMVIKLR--FVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGY 202

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD-GC 216
             +    ++L+ F EM + G  PD F   + L AC  +     G+ +H + ++   + G 
Sbjct: 203 LALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGD 262

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V V +S++DMY K G++  A ++F  +I RN+VAWN +I  Y +N    +A   F +M+ 
Sbjct: 263 VMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSE 322

Query: 277 E-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
           + G++P  +++ ++L A A L    EG+  H  A+  G     VL +++I+ Y + G L+
Sbjct: 323 QNGLQPDVITLINLLPACAIL----EGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLK 378

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQ------------------------------- 364
            AEV+F R+ E+++++WN +IA+YVQ+G+                               
Sbjct: 379 SAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYA 438

Query: 365 ---------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
                                S+ ++ +S+V MYA C  +++A++ FN ++L+DVV WN+
Sbjct: 439 ESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNS 498

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SL 462
           ++ AYA  G    +  LF +M    + PN  ++ S++     +G ++E  + F  M+   
Sbjct: 499 IIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREY 558

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           G+ P +  +  ++  + +    + A  F +EM
Sbjct: 559 GIDPGIEHYGYMLDLIGRTGNFSSAKRFIREM 590



 Score = 44.3 bits (103), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%)

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           L  P +T  +  +A  G +  A ++FD     +  V+N MI G+   GL  EAL L+  +
Sbjct: 58  LNDPALTRALRGFADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRM 117

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
              G+  DS T+  ++ + +    + EG ++
Sbjct: 118 VFSGVKADSFTYPFVIKSVTGISSLEEGKKI 148


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 198/634 (31%), Positives = 330/634 (52%), Gaps = 60/634 (9%)

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF---------- 240
           AC ++G++     +HG   K GF     + +S+IDMY KC  +  A +VF          
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61

Query: 241 ---------------------DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
                                  M  R+ V+WN++I  +  +GL+ +++  F EM ++G 
Sbjct: 62  WNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC 121

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           +P  ++  S+LSA AN+     GK  HA  V     LD ++G+ +++ Y+K GL++ ++ 
Sbjct: 122 QPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKR 181

Query: 340 VFSRMVERDIVTWNLLIASYVQSG------------QSDVVVASSIV--DMYAKCE---R 382
           VF+ + E ++VTW  LI+     G            + D V+  + +   +   CE    
Sbjct: 182 VFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETN 241

Query: 383 IDNAKQVFNSIIL----RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
           I   +Q+    +       V + N  L+ YA  G   +AS  F  M     + ++ISW +
Sbjct: 242 ISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMA----AHDVISWTT 297

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I  F  +G +  A+D F +M     + N+I+W  ++    QNS   E +  +  ML   
Sbjct: 298 MITSFSHSGNVERARDYFNRMP----ERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQE 353

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           ++P   T    + AC+++A  + G  I    ++  L     +V S + +Y++CG I +A+
Sbjct: 354 VRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQ 413

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
            +FD    K L  +N+++ GYA +G  ++ + +F+N+   G  PD IT+  IL+ CSH+G
Sbjct: 414 NLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSG 473

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           LV E    F  M  D  +  ++EHF C+V+L  R G L  AL +I  MP  P+A I G+L
Sbjct: 474 LVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWGAL 533

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           LS C   ++TE+AE   ++LL+L  +N  +Y+ L+N Y++ GR   VS+VR +MKEK ++
Sbjct: 534 LSACRIHHDTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMKEKRVQ 593

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           K+PGCSWI++   +HVF A D SHP+ ++IY  L
Sbjct: 594 KDPGCSWIEVCNRVHVFTANDTSHPQVKDIYKAL 627



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 142/567 (25%), Positives = 240/567 (42%), Gaps = 94/567 (16%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWA------ 151
             Q+H    K G  F  N+ ++  ++  Y KCDA+  A ++F R+   ++FSW       
Sbjct: 12  AHQLHGLSEKYG--FGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMIYGY 69

Query: 152 -------------------------AIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
                                     II      GL  ++L  FVEM   G  P++    
Sbjct: 70  SKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYA 129

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           +VL AC  +    +G+ +H  +++V     V V + L+DMY KCG ++ +++VF+ +   
Sbjct: 130 SVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLREH 189

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           NVV W S+I G    G  EE   +FY+M  + V      + +IL        +  G+Q H
Sbjct: 190 NVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISIGEQLH 249

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
              V  GM     +G++ ++ Y+K G  E A + F  M   D+++W  +I S+  SG   
Sbjct: 250 GFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGN-- 307

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                           ++ A+  FN +  R+V+ WN +L AY       E  +L+  M  
Sbjct: 308 ----------------VERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLR 351

Query: 427 EGISPNIISW-----------------------------------NSVILGFLRNGQMNE 451
           + + P+ I++                                   NS I  + R G++ E
Sbjct: 352 QEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEE 411

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A+++F  +Q    + NLI+W +++ G  QN  G + I  FQ ML  G KP   T    LS
Sbjct: 412 AQNLFDSIQ----EKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILS 467

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPI--VTSLVDMYAKCGNIHQAKRVFDISPSK-E 568
            C+    ++  +  H   +  D  +   +     +VD++ + G +  A  + D  P K  
Sbjct: 468 GCSHSGLVKEAK-YHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPN 526

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNL 595
             ++ A++S   +H     A    KNL
Sbjct: 527 ASIWGALLSACRIHHDTEMAELAMKNL 553



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 217/482 (45%), Gaps = 59/482 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+ S      +++    EM  +  Q     Y  +L  C    D   G+ +HARI++   
Sbjct: 97  ISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSACANIYDFQWGKHLHARIVRVEP 156

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
           F   +  V   LV  YAKC  +D + R+F  LR  NV +W ++I      G  E+    F
Sbjct: 157 FL--DVLVGNGLVDMYAKCGLIDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIF 214

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M++D V  DNF+L  +L  C     +  G  +HG+ +K G +  V V ++ + MY KC
Sbjct: 215 YQMRKDCVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKC 274

Query: 231 GDLEE-------------------------------ARKVFDGMIARNVVAWNSMIVGYV 259
           GD E+                               AR  F+ M  RNV++WN+M+  Y 
Sbjct: 275 GDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYC 334

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           QN   EE ++++  M  + V P  ++  +++ A + L     G Q  + AV  G+  D  
Sbjct: 335 QNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVS 394

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           + +S I  YS+ G +E+A+ +F  + E+++++WN ++  Y Q+G+   V+          
Sbjct: 395 VVNSAITLYSRCGRIEEAQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVI---------- 444

Query: 380 CERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNII 434
                   ++F ++++     D + +  +L+  +  G   EA   F  M  + GIS  + 
Sbjct: 445 --------EIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMTKDFGISVTLE 496

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
            +  ++  F R G +  A DM  QM     +PN   W  L+S    +     A L  + +
Sbjct: 497 HFVCMVDLFGRAGLLKLALDMIDQMP---FKPNASIWGALLSACRIHHDTEMAELAMKNL 553

Query: 495 LE 496
           LE
Sbjct: 554 LE 555


>gi|302762633|ref|XP_002964738.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
 gi|300166971|gb|EFJ33576.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
          Length = 644

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 205/656 (31%), Positives = 348/656 (53%), Gaps = 36/656 (5%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL-- 142
           LL+ C   +D+  G+QIHA I ++     ++  V   L+  Y KC +L  AS++F +L  
Sbjct: 1   LLRQCSRSKDLARGRQIHASIARSSA--PQDPVVGNWLIQMYLKCGSLIDASQVFYQLLE 58

Query: 143 -RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
             V N+ +W A+I    R G ++ A+  F +MQ +G SPD   L  + +ACG    +  G
Sbjct: 59  TSVVNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDG 118

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H Y L    D  V + SSLI MYGKCG L EA  +F  M   N VAWNS++  +VQ+
Sbjct: 119 KKIHAY-LSCNSD--VVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFVQH 175

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
              E A+ +++EM   G  P+R +  ++L+A ++L++L  GK  H   V  G E D V+ 
Sbjct: 176 DRVEAAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLVEAGHEDDVVVQ 235

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA----------- 370
           ++++N Y K G + +A  VF RM   D++ W+ +I+++V   + +  +            
Sbjct: 236 TALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHVNCAEYEESLRLFRKMQLEGNR 295

Query: 371 ---SSIVDMYAKCE---RIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRL 420
               ++V + + CE    ++  K +   ++      D+++ N +++ Y   G   +A  +
Sbjct: 296 PNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIVGNAIVSMYGKCGSLEDAWDV 355

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
           F+++      P     N++I  + R G   +A+D+F  M     + + +TW T++S   Q
Sbjct: 356 FHRVPRRNGVP---IGNALISMYGRCGSFGKARDLFDSM----AERDAVTWNTMMSVSEQ 408

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
              G ++I  F++ML+ G  P   TI   L+ C  + +L+ G+AI  +L    L     I
Sbjct: 409 LEHGRDSIQLFRQMLQEGTPPDKVTILTVLNVCASLPALQEGKAICAWLDHTPLSANQMI 468

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
             ++++MYAKCG+  +A+R+F +   ++   +NA+I  Y  +     A  +F+ +Q +G 
Sbjct: 469 GNAILNMYAKCGSRDEARRIFSVMQGRDAVSWNALIGAYGSYSRGRYAFQIFQAMQLEGS 528

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
            PD++TFT IL+ CSH GL+ E ++ F  M  D+ V+    H+GC+V+LL R G + EA 
Sbjct: 529 TPDAVTFTTILSVCSHGGLLGEAVKWFRWMREDYYVEAETGHYGCIVDLLGRLGRVPEAE 588

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
            V   MP   D  +  +LLS C    ET+  +  +E L++L+P+    YV LS  Y
Sbjct: 589 EVAEKMPAGTDPIVWTTLLSACQVHGETQRGKRAAERLVELDPEVTSAYVVLSTIY 644


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 217/671 (32%), Positives = 337/671 (50%), Gaps = 105/671 (15%)

Query: 96  YTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR-----------V 144
           Y   +IH  ++K G    +N  + T++V+ +A      +A    C              +
Sbjct: 19  YDVNKIHGGLIKTG--IIKNSNLTTRIVLAFAASRRPYLAEFARCVFHEYHVCSFSPGEM 76

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++ F W A+I  +       +AL+ F  M E+GVS D F L  VLKAC  LG+V  G  +
Sbjct: 77  EDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQI 136

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HG++ K G    +F+ + LI +Y KCG L  AR++FD M  R+ V++NSMI GYV+ GL 
Sbjct: 137 HGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLI 196

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           E A  +F  M  E      +S  S++S  A      EG                      
Sbjct: 197 ESARELFDLMPRE--MKNLISWNSMISGYAQ---TSEG---------------------- 229

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
           +N  SK         +F+ M E+D+++WN +I  YV+ G                  RI+
Sbjct: 230 VNIASK---------LFAEMPEKDLISWNSMIDGYVKHG------------------RIE 262

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
           +AK +F+ +  RDVV   T++  YA LG   +A  LF QM L     +++++NS++ G++
Sbjct: 263 DAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLR----DVVAYNSMMAGYV 318

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
           +N    EA ++F  M+                                   E+ + P  T
Sbjct: 319 QNKCHMEALEIFNDMEK----------------------------------ESHLSPDET 344

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           T+   LSA   +  L     +H Y++     L   +  +L+DMY+KCG+I  A  VF+  
Sbjct: 345 TLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGI 404

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
            +K +  +NAMI G A+HGL   A  +   +++  I PD ITF  +LNACSH+GLV EGL
Sbjct: 405 ENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGL 464

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
             F  M   H+++P ++H+GC+V++LSR G+++ A  +I  MP +P+  I  + L+ C  
Sbjct: 465 LCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSH 524

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
             E E  E +++HL+     NP +YV LSN YA+ G W +V +VR +MKE+ + K PGCS
Sbjct: 525 HKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCS 584

Query: 745 WIQIGEELHVF 755
           WI++   +H F
Sbjct: 585 WIELDGRVHEF 595


>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Brachypodium distachyon]
          Length = 676

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 186/576 (32%), Positives = 311/576 (53%), Gaps = 48/576 (8%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L+  Y + G + EA K+FD M  RNV +WN+M+ G+   G   +A+ +F  M ++   
Sbjct: 130 NTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMFDAMPVK--- 186

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS--SIINFYSKVGLLEDAE 338
               S+ +++S       L E ++      +   ++D  + +  ++I  Y +VG + DA 
Sbjct: 187 -DSASLGTLVSGFIKNGRLHEAEEL-LTKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDAR 244

Query: 339 VVFS--------------RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
            +F               R+  R++V+WN ++  Y+++G                   + 
Sbjct: 245 RLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGD------------------VC 286

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
           +A+++FN +  +D+V WNT++A Y  +    EA +LF++M      P+I+SWN +I GF 
Sbjct: 287 SAREIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMP----DPDIVSWNLIIRGFT 342

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
           + G +  A+  F +M   G     I+W T+ISG  QN   + AI  F +MLE G  P   
Sbjct: 343 QKGDVEHARGFFDRMPERGT----ISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRH 398

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           T +  L+AC  +  LR G  +H  LI       T    +L+ MY++ G +  A+ +F   
Sbjct: 399 TFSSVLAACASLPMLRLGAQLH-QLIEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQM 457

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
           P K+L  +NA+I GY  HG A EAL LF++++   + P  ITF ++L+AC +AGLV+EG 
Sbjct: 458 PQKDLVSWNALIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGW 517

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
            +F  M  ++ +   +EH+  +VNL+ R G LD+AL VI +MP  PD  + G+ L  C  
Sbjct: 518 MVFDTMIHEYSIAARIEHYAALVNLIGRHGQLDDALEVINSMPIAPDRSVWGAFLGACTA 577

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
                LA   ++ L +++P++   YV + N +A  GRW   S VR+ M+++G+ K+PG S
Sbjct: 578 KKNELLAHMAAKALSKIDPESSAPYVLIHNLHAHEGRWGSASVVREEMEQQGIHKHPGYS 637

Query: 745 WIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           WI + +++HVF++ D SHP T+EI++ L    M  R
Sbjct: 638 WIDLHDKVHVFISGDTSHPLTQEIFSVLKCFDMSSR 673



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 145/627 (23%), Positives = 245/627 (39%), Gaps = 140/627 (22%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +++L++ + +  A      M  R+       +  LL    Y R + +     AR L + +
Sbjct: 68  LAALARGRDVAAARAFFASMPVRD----AVSWNTLL--AAYSRSLNSEHLAAARRLFD-E 120

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
              R+      L+  Y +   +  A +LF  +  +NV SW  ++      G   KAL  F
Sbjct: 121 MPQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMF 180

Query: 171 VEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL------KVGFDGCVFVASSL 223
             M  +D  S    V           G++  GR      L          D  V   ++L
Sbjct: 181 DAMPVKDSASLGTLV----------SGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTL 230

Query: 224 IDMYGKCGDLEEARKVFD--------------GMIARNVVAWNSMIVGYVQNGLNEEAIR 269
           I  YG+ G + +AR++FD               + ARNVV+WNSM+  Y++ G    A  
Sbjct: 231 IAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSARE 290

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329
           +F EM                                        + D V  +++I  Y+
Sbjct: 291 IFNEMP---------------------------------------DKDLVSWNTMIAGYT 311

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQV 389
           KV  +E+AE +F  M + DIV+WNL+I  + Q G                   +++A+  
Sbjct: 312 KVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGD------------------VEHARGF 353

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI--------- 440
           F+ +  R  + WNT+++ Y   G    A  LF +M   G +P+  +++SV+         
Sbjct: 354 FDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASLPML 413

Query: 441 -LG------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            LG                        + R G + +A+ +F QM     Q +L++W  LI
Sbjct: 414 RLGAQLHQLIEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMP----QKDLVSWNALI 469

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
            G   + C  EA+  F++M    + P+  T    LSAC +   +  G  +   +I H+  
Sbjct: 470 GGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMI-HEYS 528

Query: 536 LPTPI--VTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVEALALF 592
           +   I    +LV++  + G +  A  V +  P + +  V+ A +   A      E LA  
Sbjct: 529 IAARIEHYAALVNLIGRHGQLDDALEVINSMPIAPDRSVWGAFLG--ACTAKKNELLAHM 586

Query: 593 KNLQQKGIDPD-SITFTNILNACSHAG 618
                  IDP+ S  +  I N  +H G
Sbjct: 587 AAKALSKIDPESSAPYVLIHNLHAHEG 613



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 177/420 (42%), Gaps = 56/420 (13%)

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           A   F+ M  RD V+WN L+A+Y +S  S+ + A               A+++F+ +  R
Sbjct: 80  ARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLAA---------------ARRLFDEMPQR 124

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           D V WNTLL AY   G   EA +LF +M       N+ SWN+++ GF   GQ+N+A DMF
Sbjct: 125 DAVTWNTLLGAYVRRGLMVEAEKLFDEMPQR----NVASWNTMVTGFFSAGQVNKALDMF 180

Query: 457 LQM-----QSLGVQPNLITWTTLISGLTQNSCGNEA-ILFFQEMLETGIKPSTTTITCAL 510
             M      SLG         TL+SG  +N   +EA  L  + +  T +  +       +
Sbjct: 181 DAMPVKDSASLG---------TLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLI 231

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIV----------TSLVDMYAKCGNIHQAKRV 560
           +A   V  + + R +   + R      T  +           S++  Y + G++  A+ +
Sbjct: 232 AAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREI 291

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F+  P K+L  +N MI+GY       EA  LF  +     DPD +++  I+   +  G V
Sbjct: 292 FNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMP----DPDIVSWNLIIRGFTQKGDV 347

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM---PCDPDAHIIGS 677
                 F     D   +     +  +++   + G+ D A+ +   M      PD H   S
Sbjct: 348 EHARGFF-----DRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSS 402

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           +L+ C       L   + + + +    +     AL   Y+  G   +   +   M +K L
Sbjct: 403 VLAACASLPMLRLGAQLHQLIEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKDL 462



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 144/311 (46%), Gaps = 27/311 (8%)

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
           F  K D ++ A   F R+  +   SW  +I    + G  + A+  F +M E G +PD   
Sbjct: 341 FTQKGD-VEHARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHT 399

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
             +VL AC +L  +  G  +H  + K  F      +++L+ MY + G L +A  +F  M 
Sbjct: 400 FSSVLAACASLPMLRLGAQLHQLIEK-SFLPDTATSNALMTMYSRGGALTDAEAIFKQMP 458

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG-- 302
            +++V+WN++I GY  +G   EA+++F +M    V PT ++  S+LSA  N   + EG  
Sbjct: 459 QKDLVSWNALIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWM 518

Query: 303 ---KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIAS 358
                 H  ++   +E      ++++N   + G L+DA EV+ S  +  D   W   + +
Sbjct: 519 VFDTMIHEYSIAARIE----HYAALVNLIGRHGQLDDALEVINSMPIAPDRSVWGAFLGA 574

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
              + + + ++A       +K +   +A  V              +   +A  GR G AS
Sbjct: 575 C--TAKKNELLAHMAAKALSKIDPESSAPYVL-------------IHNLHAHEGRWGSAS 619

Query: 419 RLFYQMQLEGI 429
            +  +M+ +GI
Sbjct: 620 VVREEMEQQGI 630



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 125/295 (42%), Gaps = 22/295 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS   +      A++L T+M           +  +L  C     +  G Q+H  I
Sbjct: 364 SWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASLPMLRLGAQLHQLI 423

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K+   F  +      L+  Y++  AL  A  +F ++  K++ SW A+IG     G + +
Sbjct: 424 EKS---FLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKDLVSWNALIGGYEHHGCATE 480

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACG-----ALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           AL  F +M+   V P +    ++L ACG     + GW+ F   +H Y +    +      
Sbjct: 481 ALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMIHEYSIAARIEHY---- 536

Query: 221 SSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           ++L+++ G+ G L++A +V + M IA +   W + +          E +       L  +
Sbjct: 537 AALVNLIGRHGQLDDALEVINSMPIAPDRSVWGAFLGACTAK--KNELLAHMAAKALSKI 594

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV---LGSSIINFYSKV 331
           +P   +   ++    NL A  EG+   A  V   ME   +    G S I+ + KV
Sbjct: 595 DPESSAPYVLIH---NLHA-HEGRWGSASVVREEMEQQGIHKHPGYSWIDLHDKV 645


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  335 bits (860), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 203/665 (30%), Positives = 345/665 (51%), Gaps = 91/665 (13%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN-------- 252
           G+++H  ++K G    VF+ ++L++ Y K G + +A +VFD M  ++V +WN        
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 253 -----------------------SMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
                                  +MIVGY Q G  E AI +F EM  + V PT+ ++T++
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG----------------- 332
           L++ A ++ L  G++ H+  V +G+     + +S++N Y+K G                 
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211

Query: 333 --------------LLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
                         L++ A+V F +M+ERD+V+WN +I+ Y Q G               
Sbjct: 212 SSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMD 271

Query: 364 ---QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV----VLWNTLLAAYADLGRSGE 416
              + D    +S +   A  E +   KQ+   II  +      + N L++ Y+  G    
Sbjct: 272 SSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEI 331

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           A ++  Q  +  +  ++I++ +++ G+++ G +N A+ +F    SL V+ +++ WT +I 
Sbjct: 332 AQKIIEQSMISNL--DVIAFTALLDGYVKLGDINPARRIF---DSLRVR-DVVAWTAMIV 385

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           G  QN    +A+  F+ M++ G KP+  T+   LS  + +ASL +GR IH    R     
Sbjct: 386 GYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNAS 445

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
              +  +L+ MYAK G+I+ A+ VF+ I   ++   + +MI   A HGL  EAL LF+ +
Sbjct: 446 SVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERM 505

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
            + GI PD IT+  +L+AC+H GLV +G   +  M + H++ P+  H+ C+++L  R G 
Sbjct: 506 LENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGL 565

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           L EA   I  MP +PD    GSLL++C      ELAE  +E LL +EP+N G Y AL+N 
Sbjct: 566 LQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANV 625

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           Y+A G+W   + +R  MK+KG++K+ G SW+QI  ++H+F   D  HP+ + IY  +A +
Sbjct: 626 YSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKI 685

Query: 776 GMHVR 780
              ++
Sbjct: 686 WKEIK 690



 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 196/686 (28%), Positives = 311/686 (45%), Gaps = 160/686 (23%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y   LQ  +  +D +TG+ IHARI+K G       ++   L+ FYAK   +  A R+F  
Sbjct: 16  YTSFLQRSLKFKDPFTGKSIHARIIKAG--LHLGVFLMNNLMNFYAKTGFIYDAHRVFDE 73

Query: 142 LRVKNVFSW--------------------------------AAIIGLNCRVGLSEKALIG 169
           + VK+VFSW                                A I+G N ++G  E A+  
Sbjct: 74  MPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYN-QMGQFENAIGM 132

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F EM  D V P  F L NVL +C A+  +G GR VH +V+K G    + VA+SL++MY K
Sbjct: 133 FREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAK 192

Query: 230 CGDLEEARKVFD-------------------------------GMIARNVVAWNSMIVGY 258
            GD   A+ VFD                                MI R+VV+WN+MI GY
Sbjct: 193 SGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGY 252

Query: 259 VQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
            Q+G + EA+ +F +M ++   +P + ++ S LSA ANL+ L  GKQ HA  +    +  
Sbjct: 253 NQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTF 312

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
             +G+++I+ YSK G +E A+    +++E+ +++ NL           DV+  ++++D Y
Sbjct: 313 GAVGNALISMYSKSGGVEIAQ----KIIEQSMIS-NL-----------DVIAFTALLDGY 356

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN----- 432
            K   I+ A+++F+S+ +RDVV W  ++  Y   G + +A  LF  M  EG  PN     
Sbjct: 357 VKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLA 416

Query: 433 ------------------------------IISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
                                         +   N++I  + ++G +N+A+ +F     +
Sbjct: 417 TMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVF---NLI 473

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
             + + ITWT++I  L Q+  G EA+  F+ MLE GIKP   T    LSACT V  +  G
Sbjct: 474 HWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQG 533

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           R+ +  +      +PTP                                Y  MI  +   
Sbjct: 534 RSYYNLMQNAHKIIPTP------------------------------SHYACMIDLFGRA 563

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-VGMFSDHQVKPSME 641
           GL  EA A  +N+    I+PD I + ++L +C     V++ +EL  V       ++P   
Sbjct: 564 GLLQEAHAFIENMP---IEPDVIAWGSLLASCK----VHKNVELAEVAAERLLLIEPENS 616

Query: 642 -HFGCVVNLLSRCGNLDEALRVILTM 666
             +  + N+ S CG  + A  +  +M
Sbjct: 617 GAYSALANVYSACGQWENAANIRKSM 642


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 193/606 (31%), Positives = 319/606 (52%), Gaps = 62/606 (10%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           F  +SL+ MY K G L +AR VF  M  R+ V+W  M+VG  + G   +A++ F +M  E
Sbjct: 98  FTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGE 157

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G+ P++  +T++LS+ A  +A   G++ H+  +  G+     + +S++  Y K G  E A
Sbjct: 158 GLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETA 217

Query: 338 EVVFSRMV-------------------------------ERDIVTWNLLIASYVQSGQSD 366
             VF RM                                ER IV+WN +IA Y Q+G  D
Sbjct: 218 RAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDD 277

Query: 367 VVV------------------ASSIVDMYAKCERIDNAKQVFNSIILRDVV-----LWNT 403
           + +                   +S++   A    +   KQ+ +S ILR  +     + N 
Sbjct: 278 MALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQM-HSYILRTGMPYSSQIMNA 336

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           L++ YA  G    A R+  +  +  +  N+IS+ +++ G+++ G   +A+++F  M +  
Sbjct: 337 LISTYAKSGSVETARRIMDKAVVADL--NVISFTALLEGYVKLGDTKQAREVFDVMNNRD 394

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
           V    I WT +I G  QN   +EA+  F+ M+ +G +P++ T+   LSAC  +A L  G+
Sbjct: 395 V----IAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGK 450

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMH 582
            IH   IR        +  +++ +YA+ G++  A+RVFD I   KE   + +MI   A H
Sbjct: 451 QIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQH 510

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           GL  +A+ LF+ + + G+ PD +T+  + +AC+HAG +++G   +  M ++H + P M H
Sbjct: 511 GLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSH 570

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           + C+V+LL+R G L EA   I  MP  PD  + GSLL+ C      +LAE  +E LL ++
Sbjct: 571 YACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSID 630

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           PDN G Y AL+N Y+A GRWN+ +++  + K+K ++K  G SW  +  ++HVF A D  H
Sbjct: 631 PDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLH 690

Query: 763 PKTEEI 768
           P+ + I
Sbjct: 691 PQRDAI 696



 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 170/630 (26%), Positives = 283/630 (44%), Gaps = 129/630 (20%)

Query: 104 RILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA-IIGLNCRVGL 162
           R+  +  +  RN +    L+  YAK   L  A  +F ++  ++  SW   ++GLN R G 
Sbjct: 85  RLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLN-RAGR 143

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
              A+  F++M  +G++P  F+L NVL +C A    G GR VH +V+K+G   CV VA+S
Sbjct: 144 FWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANS 203

Query: 223 LIDMYGKCGDLEEARKV-------------------------------FDGMIARNVVAW 251
           ++ MYGKCGD E AR V                               F+ M  R++V+W
Sbjct: 204 VLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSW 263

Query: 252 NSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           N++I GY QNGL++ A++ F  M T   +EP   +VTS+LSA ANL  L  GKQ H+  +
Sbjct: 264 NAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYIL 323

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA 370
             GM   + + +++I+ Y+K G +E A  +  + V  D+                +V+  
Sbjct: 324 RTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADL----------------NVISF 367

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           +++++ Y K      A++VF+ +  RDV+ W  ++  Y   G++ EA  LF  M   G  
Sbjct: 368 TALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPE 427

Query: 431 PN-----------------------------------IISWNSVILGFLRNGQMNEAKDM 455
           PN                                   +   N++I  + R+G +  A+ +
Sbjct: 428 PNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRV 487

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F Q   +  +   +TWT++I  L Q+  G +AI+ F+EML  G+KP   T     SACT 
Sbjct: 488 FDQ---ICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTH 544

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
              +  G+  +  ++     +P                              E+  Y  M
Sbjct: 545 AGFIDKGKRYYEQMLNEHGIVP------------------------------EMSHYACM 574

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC---SHAGLVNEGLELFVGMFS 632
           +   A  GL  EA    + +Q+  + PD++ + ++L AC    +A L     E  + +  
Sbjct: 575 VDLLARAGLLTEA---HEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDP 631

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
           D+        +  + N+ S CG  ++A R+
Sbjct: 632 DNS-----GAYSALANVYSACGRWNDAARI 656


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 189/596 (31%), Positives = 321/596 (53%), Gaps = 28/596 (4%)

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           +L  C  +G +G  RAVHG++ K G    +FVA+SL++ Y +CG   +AR++FDGM  RN
Sbjct: 84  LLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERN 143

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           VV W +++ GY  N      + VF EM   G  P+  ++ + L+A      +D GKQ H 
Sbjct: 144 VVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHG 203

Query: 308 VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
            A+  G E    +G+S+ + Y+K+G L+ A   F R+ E++++TW  +I++  +  +   
Sbjct: 204 YAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVE 263

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           +  S  +DM      +D    + N   L  V+   +L     DL    +     +++   
Sbjct: 264 LGLSLFIDML-----MDGV--MPNEFTLTSVM---SLCGTRLDLNLGKQVQAFSFKI--- 310

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ------- 480
           G   N+   NS +  +LR G+ +EA  +F QM+      ++ITW  +ISG  Q       
Sbjct: 311 GCETNLPVKNSTMYLYLRKGETDEAMRLFEQME----DASIITWNAMISGYAQIMDSAKD 366

Query: 481 ----NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
                S G +A+  F+++  + +KP   T +  LS C+ + +L  G  IH   I+     
Sbjct: 367 DLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLS 426

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              + ++LV+MY KCG I  A + F   P++    + +MISGY+ HG   EA+ LF+ ++
Sbjct: 427 DVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMR 486

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
             G+ P+ ITF ++L+ACS+AGLV E    F  M  ++ ++P ++H+GC++++  R G +
Sbjct: 487 LAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRV 546

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           ++A   I     +P+  I  SL++ C      ELA Y ++ LL+L+P     Y+ L N Y
Sbjct: 547 EDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMY 606

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
            ++ RW +V++VR +MK++ +      SWI I ++++ F A DR+HP+  E+Y  L
Sbjct: 607 ISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLL 662



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 159/597 (26%), Positives = 270/597 (45%), Gaps = 99/597 (16%)

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           ++EA+ +LTE K     +   +Y  LL  CV    +   + +H  + K G     + +V 
Sbjct: 63  VQEAMTMLTEGKA----VQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGA--GADMFVA 116

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG---LNCRVGLSEKALIGFVEMQED 176
           T LV  Y +C A   A RLF  +  +NV +W A++    LN +  L    L  FVEM E 
Sbjct: 117 TSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPAL---GLEVFVEMLEM 173

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G  P ++ L   L AC A   V  G+ VHGY +K G +    + +SL  +Y K G L+ A
Sbjct: 174 GRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSA 233

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQN-GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
            + F  +  +NV+ W +MI    ++    E  + +F +M ++GV P   ++TS++S    
Sbjct: 234 LRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGT 293

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
              L+ GKQ  A +   G E +  + +S +  Y + G  ++A  +F +M +  I+TWN +
Sbjct: 294 RLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAM 353

Query: 356 IASYVQSGQS----------------------------DVVVASSIVDMYAKCERIDNAK 387
           I+ Y Q   S                            D+   SSI+ + +    ++  +
Sbjct: 354 ISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGE 413

Query: 388 QVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           Q+    I    L DVV+ + L+  Y   G   +A++ F +M     +   ++W S+I G+
Sbjct: 414 QIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMP----TRTFVTWTSMISGY 469

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPS 502
            ++GQ  EA  +F +M+  GV+PN IT+ +L+S  +      EA  +F  M  E  I+P 
Sbjct: 470 SQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEP- 528

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA----K 558
                                     ++ H  C        ++DM+ + G +  A    K
Sbjct: 529 --------------------------VVDHYGC--------MIDMFVRLGRVEDAFSFIK 554

Query: 559 RVFDISPSKELPVYNAMISGYAMHG---LAVEALALFKNLQQKGIDPDSITFTNILN 612
           R     P++   +++++++G   HG   LA  A      L+ KGI+    T+  +LN
Sbjct: 555 RT-GFEPNE--AIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIE----TYILLLN 604


>gi|356519676|ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 728

 Score =  335 bits (859), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 206/678 (30%), Positives = 350/678 (51%), Gaps = 57/678 (8%)

Query: 128 KCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPN 187
           K   L+ A  LF ++  + V SW  +I     +G   +AL     M    V+ +      
Sbjct: 53  KMGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYPEALTLVSFMHRSCVALNEVSFSA 112

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           VL AC   G    G+ VH  +LK G++    V S+L+     C  + EA  VF+ +   N
Sbjct: 113 VLSACARSGSFLLGKQVHSLLLKSGYERFGLVGSALLYFCVHCCGIREAEVVFEELRDGN 172

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTL-----------------EGVE---------- 280
            V W+ M+ GYV+  + ++A+ +F +M +                 +G E          
Sbjct: 173 QVLWSLMLAGYVKQDMMDDAMDMFEKMPVRDVVAWTTLISGYAKREDGCERALDLFGCMR 232

Query: 281 ------PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
                 P   ++  ++   A L  L  GK  H + +  G++ DN +G ++  FY     +
Sbjct: 233 RSSEVLPNEFTLDCVVRVCARLGVLRAGKVVHGLCIKGGLDFDNSIGGAVTEFYCGCEAI 292

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
           +DA+ V+  M                  GQ+ + VA+S++       RI+ A+ VF  + 
Sbjct: 293 DDAKRVYESM-----------------GGQASLNVANSLIGGLVSKGRIEEAELVFYELR 335

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
             + V +N ++  YA  G+  ++ RLF +M  E    N+ S N++I  + +NG+++EA  
Sbjct: 336 ETNPVSYNLMIKGYAMSGQFEKSKRLFEKMSPE----NLTSLNTMISVYSKNGELDEAVK 391

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F + +    + N ++W +++SG   N    EA+  +  M    +  S +T +    AC+
Sbjct: 392 LFDKTKG---ERNYVSWNSMMSGYIINGKYKEALNLYVAMRRLSVDYSRSTFSVLFRACS 448

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
            + S R G+ +H +LI+    +   + T+LVD Y+KCG++ +A+R F    S  +  + A
Sbjct: 449 CLCSFRQGQLLHAHLIKTPFQVNVYVGTALVDFYSKCGHLAEAQRSFISIFSPNVAAWTA 508

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           +I+GYA HGL  EA+ LF+++  +GI P++ TF  +L+AC+HAGLV EGL +F  M   +
Sbjct: 509 LINGYAYHGLGSEAILLFRSMLHQGIVPNAATFVGVLSACNHAGLVCEGLRIFHSMQRCY 568

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            V P++EH+ CVV+LL R G+L EA   I+ MP + D  I G+LL+      + E+ E  
Sbjct: 569 GVTPTIEHYTCVVDLLGRSGHLKEAEEFIIKMPIEADGIIWGALLNASWFWKDMEVGERA 628

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           +E L  L+P+    +V LSN YA  GRW + +++R  ++   LRK+PGCSWI++  ++H+
Sbjct: 629 AEKLFSLDPNPIFAFVVLSNMYAILGRWGQKTKLRKRLQSLELRKDPGCSWIELNNKIHL 688

Query: 755 FVACDRSHPKTEEIYATL 772
           F   D++H  ++ IYAT+
Sbjct: 689 FSVEDKTHLYSDVIYATV 706



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 156/637 (24%), Positives = 259/637 (40%), Gaps = 116/637 (18%)

Query: 30  LTKLRESDNSYESL----YKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGEL 85
           + KL E+ + ++ +      S+   IS  S   +  EA+ L++ M      +    +  +
Sbjct: 54  MGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYPEALTLVSFMHRSCVALNEVSFSAV 113

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR-- 143
           L  C        G+Q+H+ +LK+G  + R   V + L+ F   C  +  A  +F  LR  
Sbjct: 114 LSACARSGSFLLGKQVHSLLLKSG--YERFGLVGSALLYFCVHCCGIREAEVVFEELRDG 171

Query: 144 -----------------------------VKNVFSWAAII-GLNCRVGLSEKALIGFVEM 173
                                        V++V +W  +I G   R    E+AL  F  M
Sbjct: 172 NQVLWSLMLAGYVKQDMMDDAMDMFEKMPVRDVVAWTTLISGYAKREDGCERALDLFGCM 231

Query: 174 QEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           +    V P+ F L  V++ C  LG +  G+ VHG  +K G D    +  ++ + Y  C  
Sbjct: 232 RRSSEVLPNEFTLDCVVRVCARLGVLRAGKVVHGLCIKGGLDFDNSIGGAVTEFYCGCEA 291

Query: 233 LEEARKVFD---GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           +++A++V++   G  + NV   NS+I G V  G  EEA  VFYE+     E   VS   +
Sbjct: 292 IDDAKRVYESMGGQASLNVA--NSLIGGLVSKGRIEEAELVFYELR----ETNPVSYNLM 345

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMV-ER 347
           +   A     ++ K+     +   M  +N+   +++I+ YSK G L++A  +F +   ER
Sbjct: 346 IKGYAMSGQFEKSKR-----LFEKMSPENLTSLNTMISVYSKNGELDEAVKLFDKTKGER 400

Query: 348 DIVTWNLLIASYVQSG-------------------------------------------- 363
           + V+WN +++ Y+ +G                                            
Sbjct: 401 NYVSWNSMMSGYIINGKYKEALNLYVAMRRLSVDYSRSTFSVLFRACSCLCSFRQGQLLH 460

Query: 364 --------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                   Q +V V +++VD Y+KC  +  A++ F SI   +V  W  L+  YA  G   
Sbjct: 461 AHLIKTPFQVNVYVGTALVDFYSKCGHLAEAQRSFISIFSPNVAAWTALINGYAYHGLGS 520

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTL 474
           EA  LF  M  +GI PN  ++  V+      G + E   +F  MQ   GV P +  +T +
Sbjct: 521 EAILLFRSMLHQGIVPNAATFVGVLSACNHAGLVCEGLRIFHSMQRCYGVTPTIEHYTCV 580

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           +  L ++    EA  F  +M    I+         L+A      +  G      L   D 
Sbjct: 581 VDLLGRSGHLKEAEEFIIKM---PIEADGIIWGALLNASWFWKDMEVGERAAEKLFSLD- 636

Query: 535 CLPTPIVTSLV--DMYAKCGNIHQAKRVFDISPSKEL 569
             P PI   +V  +MYA  G   Q  ++     S EL
Sbjct: 637 --PNPIFAFVVLSNMYAILGRWGQKTKLRKRLQSLEL 671



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 150/366 (40%), Gaps = 55/366 (15%)

Query: 413 RSGEASRLFYQMQLEGISP---NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
           +  E  RLF    L+   P   N+IS N  I    + G++ EA+ +F QM +  V     
Sbjct: 19  KRNERFRLF-TTHLQTTEPHVGNVISTNISIAQRFKMGKLEEARHLFDQMPNRTVS---- 73

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           +W T+ISG +      EA+     M  + +  +  + +  LSAC    S   G+ +H  L
Sbjct: 74  SWNTMISGYSLLGRYPEALTLVSFMHRSCVALNEVSFSAVLSACARSGSFLLGKQVHSLL 133

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV----------------------------- 560
           ++        + ++L+     C  I +A+ V                             
Sbjct: 134 LKSGYERFGLVGSALLYFCVHCCGIREAEVVFEELRDGNQVLWSLMLAGYVKQDMMDDAM 193

Query: 561 --FDISPSKELPVYNAMISGYAMHGLAVE-ALALFKNLQQKG-IDPDSITFTNILNACS- 615
             F+  P +++  +  +ISGYA      E AL LF  +++   + P+  T   ++  C+ 
Sbjct: 194 DMFEKMPVRDVVAWTTLISGYAKREDGCERALDLFGCMRRSSEVLPNEFTLDCVVRVCAR 253

Query: 616 ----HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
                AG V  GL +  G+  D+ +  ++  F C       C  +D+A RV  +M     
Sbjct: 254 LGVLRAGKVVHGLCIKGGLDFDNSIGGAVTEFYC------GCEAIDDAKRVYESMGGQAS 307

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
            ++  SL+   V     E AE +     +L   NP +Y  +   YA SG++ +  ++ + 
Sbjct: 308 LNVANSLIGGLVSKGRIEEAELV---FYELRETNPVSYNLMIKGYAMSGQFEKSKRLFEK 364

Query: 732 MKEKGL 737
           M  + L
Sbjct: 365 MSPENL 370


>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
 gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
          Length = 941

 Score =  335 bits (859), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 208/759 (27%), Positives = 361/759 (47%), Gaps = 101/759 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           I++ ++  ++  A    ++M     +     +  +L  C     + TG+ +H   L +G 
Sbjct: 184 IAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGL 243

Query: 110 DFFARNEYVETKLVVFYAKCDAL-DVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           DF  R   +E  L+  Y KC    D A  +F R+   +V SW+A I      G   +A+ 
Sbjct: 244 DFSLR---MENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIA---AYGQHWEAIK 297

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F  M  +GV P+   L +VL+AC  +G    GR +H  VL   +     V ++   +Y 
Sbjct: 298 TFELMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYA 357

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KC  + +A +VF  +  ++ V+WN+++  Y + GL  +AI +  +M +EG  P  ++  +
Sbjct: 358 KCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFIT 417

Query: 289 IL---SASA------NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           IL   S SA      N  +L +G+Q H+  + NG++ D  LG+ ++  Y + G L+DA  
Sbjct: 418 ILYSCSQSALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARA 477

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQ----------------------------------- 364
            F  + +R++ +W +LI+  VQ+G+                                   
Sbjct: 478 AFQGIHQRNVFSWTILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGD 537

Query: 365 -----------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                            SD++ ++++++MY  CE +D A+ VF  ++ RDVV W  +++A
Sbjct: 538 LSLGKTIHERIRTKGLESDIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISA 597

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ-- 465
           YA  G   EA +L+ +M+ E   P+ ++  SV+        + E K +  ++ + GV+  
Sbjct: 598 YAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRALVEGKAIHERIVASGVETD 657

Query: 466 -----------------------------PNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
                                         +++ W  +I    QN C  +A   + EM+E
Sbjct: 658 VFVGTAVVSFYGKCEAVEDARQVFDRILDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVE 717

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC-GNIH 555
             + P+  T+   L +C+    +  G ++H           T +V +L++MYAKC GN+ 
Sbjct: 718 NQMPPNDVTLITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCCGNLE 777

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
            A+  F+   SK +  ++++++ YA +G    A  LF  + Q G+ P+ +TFT++L+ACS
Sbjct: 778 AAQTAFESVASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACS 837

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           HAGL +EG   F+ M  DH ++P+ EH+GC+VNLL++ G + +A   +  MP  PDA   
Sbjct: 838 HAGLADEGWSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPVQPDASAW 897

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            SLL  C    + E     ++ LL  EP N   YV L N
Sbjct: 898 RSLLGACEVHTDKEYGALAAKQLLDAEPRNSAAYVLLYN 936



 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 173/683 (25%), Positives = 307/683 (44%), Gaps = 123/683 (18%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           +  C    D   G+QIHARIL +G     +  +   LV  Y KC +++ A   F R+  +
Sbjct: 17  VSACAALGDSLQGKQIHARILSSG--LGASVLLSNSLVYMYGKCGSVEEARNAFDRMPER 74

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           ++ SW A+I +  +    ++A+  +   + +G  PD     ++L AC A G + FGR +H
Sbjct: 75  DLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKFGRMLH 134

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
            + L   F     V + LI MY  CG L++A  VF+     +V  W ++I  Y ++G  E
Sbjct: 135 EHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYTRHGKLE 194

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
            A   + +M  EG+    ++  ++L   ++L+ L+ GK  H +A+ +G++    + +S+I
Sbjct: 195 CAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLI 254

Query: 326 NFYSKVGLLED-AEVVFSRMVERDIVTWNLLIASYVQSGQS------------------- 365
           + Y K     D A  VF R+    +++W+  IA+Y Q  ++                   
Sbjct: 255 SMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAYGQHWEAIKTFELMNLEGVKPNATTL 314

Query: 366 ------------------------------DVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
                                         +  V ++   +YAKC R+ +A +VF+SI  
Sbjct: 315 TSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPC 374

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG---------FLRN 446
           +D V WN +++AYA  G   +A  L  QMQ+EG  P+ I++ +++           +  +
Sbjct: 375 KDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQYGNS 434

Query: 447 GQMNEAKDMFLQMQSLGV-------------------------------QPNLITWTTLI 475
             + + + +  QM S G+                               Q N+ +WT LI
Sbjct: 435 KSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILI 494

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           S L QN   +E +   + M   G + +  T    L AC+    L  G+ IH  +      
Sbjct: 495 SLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHERIRTKG-- 552

Query: 536 LPTPIVTS--LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
           L + I+TS  L++MY  C ++ +A+ VF+    +++  +  +IS YA  G  +EAL L++
Sbjct: 553 LESDIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYR 612

Query: 594 NLQQKGIDPDSITFTNILNACS-----------HAGLVNEGLE--LFVGMFSDHQVKPSM 640
            ++Q+   PD++T  ++L AC+           H  +V  G+E  +FVG           
Sbjct: 613 RMEQEFSRPDAVTLISVLEACASLRALVEGKAIHERIVASGVETDVFVGT---------- 662

Query: 641 EHFGCVVNLLSRCGNLDEALRVI 663
                VV+   +C  +++A +V 
Sbjct: 663 ----AVVSFYGKCEAVEDARQVF 681



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 163/599 (27%), Positives = 272/599 (45%), Gaps = 74/599 (12%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M  +GV  D   L N + AC ALG    G+ +H  +L  G    V +++SL+ MYGKCG 
Sbjct: 1   MDLEGVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGS 60

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           +EEAR  FD M  R++++WN+MI  Y Q+   ++AI+++    LEG +P  V+  S+L+A
Sbjct: 61  VEEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNA 120

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
                 L  G+  H   +      D ++ + +I+ YS  G L+DA  VF      D+ TW
Sbjct: 121 CFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTW 180

Query: 353 NLLIASYVQSGQSDVVVAS-----------------SIVDMYAKCERIDNAKQV----FN 391
             +IA+Y + G+ +   A+                 +++D  +  E ++  K V      
Sbjct: 181 TTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALG 240

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
           S +   + + N+L++ Y    R  + +R  +   L    P++ISW++ I  +   GQ  E
Sbjct: 241 SGLDFSLRMENSLISMYGKCSRHPDEAREVF---LRISRPSVISWSAFIAAY---GQHWE 294

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A   F  M   GV+PN                                    TT+T  L 
Sbjct: 295 AIKTFELMNLEGVKPN-----------------------------------ATTLTSVLR 319

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           AC  V +   GR IH  ++       T ++ +   +YAKC  +  A RVF   P K+   
Sbjct: 320 ACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVS 379

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE--------- 622
           +NA++S YA  GL  +A+ L + +Q +G  PD ITF  IL +CS + L+ +         
Sbjct: 380 WNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTD 439

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G ++   M S+  +         +V +  RCG+LD+A R         +      L+S  
Sbjct: 440 GRQVHSQMISN-GLDGDTYLGNLLVQMYGRCGSLDDA-RAAFQGIHQRNVFSWTILISLL 497

Query: 683 VKSNE-TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
           V++ E +E  E +    L+    N   +++L  A + +G  +    + + ++ KGL  +
Sbjct: 498 VQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHERIRTKGLESD 556


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  335 bits (859), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 200/670 (29%), Positives = 327/670 (48%), Gaps = 98/670 (14%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQ 260
           + VH  +L +G    V +  SLI++Y  C D   AR VF+   I  +V  WNS++ GY +
Sbjct: 24  KLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSK 83

Query: 261 NGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           N +  + + VF  +       P   +  +++ A   L     G+  H + V +G   D V
Sbjct: 84  NSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVV 143

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS-------------- 365
           + SS++  Y+K  L E++  VF  M ERD+ +WN +I+ + QSG++              
Sbjct: 144 VASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSG 203

Query: 366 --------------------------------------DVVVASSIVDMYAKCERIDNAK 387
                                                 D  V S++VDMY KC+ ++ A+
Sbjct: 204 FEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAR 263

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG----- 442
           +VF  +  + +V WN+++  Y   G S     +  +M +EG  P+  +  S+++      
Sbjct: 264 EVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSR 323

Query: 443 ------------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
                                         + + G+ N A+ +F + Q    +    +W 
Sbjct: 324 NLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAE----SWN 379

Query: 473 TLISGLTQNSCGN--EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
            +IS     S GN  +A+  + +M+  G+KP   T T  L AC+ +A+L  G+ IH  + 
Sbjct: 380 VMISSYI--SVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSIS 437

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
              L     ++++L+DMY+KCGN  +A R+F+  P K++  +  MIS Y  HG   EAL 
Sbjct: 438 ESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALY 497

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
            F  +Q+ G+ PD +T   +L+AC HAGL++EGL+ F  M S + ++P +EH+ C++++L
Sbjct: 498 QFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDIL 557

Query: 651 SRCGNLDEALRVILTMPCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
            R G L EA  +I   P   D A ++ +L S C    E  L + I+  L++  PD+   Y
Sbjct: 558 GRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTY 617

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           + L N YA+   W+   +VR  MKE GLRK PGCSWI++ +++  F A DRSH + E +Y
Sbjct: 618 MVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRSHLRAENVY 677

Query: 770 ATLALLGMHV 779
             LALL  H+
Sbjct: 678 ECLALLSGHM 687



 Score =  209 bits (533), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 139/458 (30%), Positives = 236/458 (51%), Gaps = 35/458 (7%)

Query: 96  YTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
           + G+ IH  ++K+G  +  +  V + LV  YAK +  + + ++F  +  ++V SW  +I 
Sbjct: 124 FLGRMIHTLVVKSG--YVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVIS 181

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
              + G +EKAL  F  M+  G  P++  L   + AC  L W+  G+ +H   +K GF+ 
Sbjct: 182 CFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFEL 241

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
             +V S+L+DMYGKC  LE AR+VF  M  +++VAWNSMI GYV  G ++  + +   M 
Sbjct: 242 DEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMI 301

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
           +EG  P++ ++TSIL A +    L  GK  H   + + +  D  +  S+I+ Y K G   
Sbjct: 302 IEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEAN 361

Query: 336 DAEVVFSRMVERDIV-TWNLLIASYVQSG-----------------QSDVVVASSIVDMY 377
            AE VFS+  ++D+  +WN++I+SY+  G                 + DVV  +S++   
Sbjct: 362 LAETVFSK-TQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPAC 420

Query: 378 AKCERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           ++   ++  KQ+  SI    +  D +L + LL  Y+  G   EA R+F  +       ++
Sbjct: 421 SQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIP----KKDV 476

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
           +SW  +I  +  +GQ  EA   F +MQ  G++P+ +T   ++S        +E + FF +
Sbjct: 477 VSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQ 536

Query: 494 ML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           M  + GI+P     +C +    D+   R GR +  Y I
Sbjct: 537 MRSKYGIEPIIEHYSCMI----DILG-RAGRLLEAYEI 569



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 109/237 (45%), Gaps = 25/237 (10%)

Query: 510 LSACTD-VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSK 567
           L  CT+   SLR  + +H  ++   L     +  SL+++Y  C +   A+ VF+      
Sbjct: 10  LRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRS 69

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPDSITFTNILNACSHAGLVNEGLEL 626
           ++ ++N+++SGY+ + +  + L +FK L    I  PDS TF N++ A  +  L  E L  
Sbjct: 70  DVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKA--YGALGREFLGR 127

Query: 627 FV-------GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
            +       G   D  V  S+      V + ++    + +L+V   MP + D     +++
Sbjct: 128 MIHTLVVKSGYVCDVVVASSL------VGMYAKFNLFENSLQVFDEMP-ERDVASWNTVI 180

Query: 680 STCVKSNETELAEYISEHLLQ--LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
           S   +S E E A  +   +     EP    N V+L+ A +A  R   + + ++I ++
Sbjct: 181 SCFYQSGEAEKALELFGRMESSGFEP----NSVSLTVAISACSRLLWLERGKEIHRK 233


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  335 bits (859), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 207/691 (29%), Positives = 342/691 (49%), Gaps = 70/691 (10%)

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           +GQ   AR L +    +RN      ++   A+   +  A RLF  +  +N  SW A+I  
Sbjct: 24  SGQLAAARRLFDS-MPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAA 82

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
               G    A   F  M     + D F    ++      G +G  R     + ++  D C
Sbjct: 83  CSDHGRVADARDLFDAMP----ARDGFSWTLMVSCYARAGELGLARDA---LDRMPGDKC 135

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
               +++I  Y K G  ++A  +   M A ++++WNS++VG  +NG    A++ F EM  
Sbjct: 136 TACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEM-- 193

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLE 335
               P R  V+  L     + A   G    A  +  G+   NV+   +++N Y + G + 
Sbjct: 194 ----PARDMVSWNLMLEGYVRA---GDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIG 246

Query: 336 DAEVVFSRMVERDIVTWNLLIASY-------------------------------VQSGQ 364
           +A  +F R+ +R++  WN++++ Y                               V+ G+
Sbjct: 247 EARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRGGK 306

Query: 365 -------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
                              ++++  Y + + ID+A+ +F+ + +RD V WNT+++ Y   
Sbjct: 307 LQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHC 366

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
           G   EA  LF QM     + +++SWN++I G+  +GQM +A  +F +M     Q N ++W
Sbjct: 367 GMLDEAMVLFQQMP----NKDMVSWNTMIAGYAHDGQMRKAVGIFRKMN----QRNTVSW 418

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
            ++ISG  QN    EA+  F  M     +   +T  C LSAC D+A+L  GR  H  L R
Sbjct: 419 NSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLAR 478

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
                 +    +L+  YAKCG I +A++VFD  P+ ++  +NA+I GYA +G   EA+++
Sbjct: 479 SGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISV 538

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F+ ++   + PD +TF  +L+ACSHAGL++EG + F  M  D+ ++P  EH+ C+V+LL 
Sbjct: 539 FREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSMTKDYALRPVAEHYACMVDLLG 598

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G L EA  +I  M   P+A + G++L  C      ELA+  +E L +LEP    NYV 
Sbjct: 599 RSGRLSEAFEIIQGMQVQPNAGVWGAMLGACRVHKNHELAQLAAEKLYELEPHKTSNYVL 658

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
           LSN  A +G+W+E   +R  +KE+G+ K PG
Sbjct: 659 LSNITAEAGKWDEAQNMRVFIKERGVHKTPG 689


>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 655

 Score =  335 bits (858), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 196/642 (30%), Positives = 332/642 (51%), Gaps = 97/642 (15%)

Query: 200 FGRAVHGYVLKVGFD-GCVFVASSLIDMYGKCGDLEEARKVFDGMIAR--NVVAWNSMIV 256
            G+ +H ++LK         V  +L  +Y  C ++E AR VFD +     N +AW+ MI 
Sbjct: 17  LGQIIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIR 76

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
            YV NG  E+A+ ++Y+M   GV PT+ +   +L A A L A+++GK  H+    +    
Sbjct: 77  AYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIEDGKLIHSHVKCSNFAA 136

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY----------------- 359
           D  + +++++FY+K G L+ A  VF  M +RDIV WN +I+ +                 
Sbjct: 137 DMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMR 196

Query: 360 ------------------------VQSGQS------------DVVVASSIVDMYAKCERI 383
                                   ++ G++            D+VV + I+D+YAK + I
Sbjct: 197 RSDCLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCI 256

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG----ISPNIISWNSV 439
             A++VF+S   ++ V W+ ++  Y +     EA  +F QM +      ++P  ++   +
Sbjct: 257 IYARRVFDSDFKKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTP--VAIGLI 314

Query: 440 ILGFLRNGQMNEAK--------------------------------DMFLQMQSLGVQPN 467
           ++G  R G ++  +                                D F Q   +G++ +
Sbjct: 315 LMGCARFGDLSGGRCVHCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLK-D 373

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
           ++++ +LISG  +N    E+   F +M  +GI+P  TT+   L+AC+++A+L +G + HG
Sbjct: 374 IVSYNSLISGCVENCRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHG 433

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
           Y + +   + T I  +L+DMY KCG ++ AKRVFD    +++  +N M+ G+ +HGL  E
Sbjct: 434 YCVVNGYAVNTSICNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKE 493

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF-SDHQVKPSMEHFGCV 646
           AL+LF ++Q  G+ PD +T   IL+ACSH+GLV+EG +LF  M   D  V P ++H+ C+
Sbjct: 494 ALSLFNSMQDTGVHPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCM 553

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
            +LL+R G LDEA   +  MP +PD  ++G+LLS C      EL   +S+ +  L  +  
Sbjct: 554 TDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNVELGNEVSKKMQSL-GETT 612

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
            + V LSN Y+A+ RW + +++R   K+ GL K PG SW+ +
Sbjct: 613 ESLVLLSNTYSAAERWEDAAKIRMTQKKSGLLKTPGYSWVDV 654



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 149/276 (53%), Gaps = 10/276 (3%)

Query: 34  RESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEM--KCRNFQIGPEIYGELLQGCVY 91
           R  D+ ++    ++   I    + + I+EA ++  +M        + P   G +L GC  
Sbjct: 261 RVFDSDFKKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGLILMGCAR 320

Query: 92  KRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWA 151
             D+  G+ +H   +K G  F  +  V   ++ FYAK  +L  A R F  + +K++ S+ 
Sbjct: 321 FGDLSGGRCVHCYAIKAG--FILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYN 378

Query: 152 AIIG---LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208
           ++I     NCR   +E++   F +M+  G+ PD   L  +L AC  L  +G G + HGY 
Sbjct: 379 SLISGCVENCR---AEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYC 435

Query: 209 LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
           +  G+     + ++L+DMY KCG L  A++VFD M  R++V+WN+M+ G+  +GL +EA+
Sbjct: 436 VVNGYAVNTSICNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEAL 495

Query: 269 RVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            +F  M   GV P  V++ +ILSA ++   +DEGKQ
Sbjct: 496 SLFNSMQDTGVHPDEVTLLAILSACSHSGLVDEGKQ 531


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  335 bits (858), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 194/641 (30%), Positives = 328/641 (51%), Gaps = 90/641 (14%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE-EAIRVFYEMTLE-GVEPTRVSV 286
           K G L  AR++FD M+ R+ ++W ++I GYV NG+N  EA+ +F +M +E G+      +
Sbjct: 13  KTGHLNNARQLFDKMLQRDEISWTTIISGYV-NGMNTTEALSLFSKMWVEPGLHMDPFIL 71

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE 346
           +  L A     ++  G+  H  +V         +GS++++ Y K+G +++  +VF  M  
Sbjct: 72  SLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPL 131

Query: 347 RDIVTWNLLIAS-----------------YVQSGQSDV---------------------- 367
           R++V+W  +IA                  ++Q    D                       
Sbjct: 132 RNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREI 191

Query: 368 -------------VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
                         VA+++  MY KC ++D   ++F S+  RDVV W T++ +   +G+ 
Sbjct: 192 HCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQE 251

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV---------- 464
             A + F +M+   +SPN  ++ +VI G    G++   + +   +   G+          
Sbjct: 252 ENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSI 311

Query: 465 ---------------------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
                                + ++I+W+T+ISG  Q  CG EA  +   M   G +P+ 
Sbjct: 312 MAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNE 371

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
                 LS C ++A L  G+ +H +++   L   T + ++L++MY+KCG+I +A ++FD 
Sbjct: 372 FAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDE 431

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
           +    +  + AMI+GYA HG + EA+ LFK L + G+ PDS+TF  +L ACSHAGLV+ G
Sbjct: 432 AEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLG 491

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
              F  +   HQ+ PS +H+GC+++LL R G L++A  +I +MP   D  +  +LL  C 
Sbjct: 492 FHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACR 551

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
              + +  +  +E +LQL+P+    ++ L+N YAA G+W E ++VR +MK KG+ K PG 
Sbjct: 552 IHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGW 611

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATLALLG----MHVR 780
           SWI+  + +  FV+ DRSHP+ E IY  L LL     MH++
Sbjct: 612 SWIKFKDRVSAFVSGDRSHPEGEYIYDVLDLLASQAEMHMQ 652



 Score =  209 bits (532), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 134/463 (28%), Positives = 226/463 (48%), Gaps = 26/463 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+ L +    +EA+   ++M  +        +   L+ C     +  G++IH + LK G 
Sbjct: 141 IAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKG- 199

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F    +V   L   Y KC  LD   RLF  +  ++V SW  II  N ++G  E A+  F
Sbjct: 200 -FTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAF 258

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M+E  VSP+ F    V+  C  LG + +G  +H +V++ G    + VA+S++ MY KC
Sbjct: 259 RRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKC 318

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
             L+ A  VF G+  R++++W++MI GY Q G  EEA      M  EG  P   +  S+L
Sbjct: 319 WQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVL 378

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           S   N+  L++GKQ HA  +  G+E + ++ S++IN YSK G +++A  +F      +IV
Sbjct: 379 SVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIV 438

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           +W  +I  Y + G S        +D++ K  ++          +  D V +  +LAA + 
Sbjct: 439 SWTAMINGYAEHGYSQ-----EAIDLFKKLPKVG---------LRPDSVTFIAVLAACSH 484

Query: 411 LGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
            G        F  + ++  I P+   +  +I    R G++N+A+ M   +QS+  Q + +
Sbjct: 485 AGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESM---IQSMPFQRDDV 541

Query: 470 TWTTLISGLTQN---SCGNEAILFFQEMLETGIKPSTTTITCA 509
            W+TL+     +    CG  A    +++L+     + T IT A
Sbjct: 542 VWSTLLRACRIHGDVDCGKRAA---EKILQLDPNCAVTHITLA 581



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 142/564 (25%), Positives = 265/564 (46%), Gaps = 33/564 (5%)

Query: 62  EAVDLLTEMKCR-NFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           EA+ L ++M       + P I    L+ C     +  G+ +H   +K    F  + +V +
Sbjct: 50  EALSLFSKMWVEPGLHMDPFILSLALKACGLNMSVSFGESLHGYSVKTD--FVNSVFVGS 107

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            LV  Y K   +D    +F  + ++NV SW AII    R G +++AL  F +M    V  
Sbjct: 108 ALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGC 167

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D +   + LKAC   G + +GR +H   LK GF    FVA++L  MY KCG L+   ++F
Sbjct: 168 DTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLF 227

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           + M  R+VV+W ++I+  VQ G  E A++ F  M    V P   +  +++S  A L  ++
Sbjct: 228 ESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIE 287

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G+Q HA  +  G+     + +SI+  YSK   L+ A  VF  +  RDI++W+ +I+ Y 
Sbjct: 288 WGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYA 347

Query: 361 QSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIIL----RDVV 399
           Q G                 + +    +S++ +      ++  KQ+   ++     ++ +
Sbjct: 348 QGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTM 407

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           + + L+  Y+  G   EAS++F + +      NI+SW ++I G+  +G   EA D+F ++
Sbjct: 408 VQSALINMYSKCGSIKEASKIFDEAEYN----NIVSWTAMINGYAEHGYSQEAIDLFKKL 463

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSACTDVAS 518
             +G++P+ +T+  +++  +     +    +F  + +   I PS     C +        
Sbjct: 464 PKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGR 523

Query: 519 LRNGRAIHGYL--IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           L +  ++   +   R D+   T +    +     CG    A+++  + P+  +  +  + 
Sbjct: 524 LNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGK-RAAEKILQLDPNCAV-THITLA 581

Query: 577 SGYAMHGLAVEALALFKNLQQKGI 600
           + YA  G   EA  + K ++ KG+
Sbjct: 582 NMYAAKGKWKEAAEVRKMMKSKGV 605


>gi|302789718|ref|XP_002976627.1| hypothetical protein SELMODRAFT_105356 [Selaginella moellendorffii]
 gi|300155665|gb|EFJ22296.1| hypothetical protein SELMODRAFT_105356 [Selaginella moellendorffii]
          Length = 734

 Score =  334 bits (857), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 212/730 (29%), Positives = 351/730 (48%), Gaps = 102/730 (13%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           YG LL+ C   + +  G +IH ++ ++G    ++ Y+   L+  Y  C  +  A  +F +
Sbjct: 6   YGRLLRECGLSKSLSKGMEIHKKLAESG--VDKDTYLGNNLIQMYGNCGCVGKAREIFDK 63

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           L  +NV+SW  ++    + G   +AL+   +M  +G+ P++     +L AC  LG V  G
Sbjct: 64  LIDRNVYSWTIMLSAYAQNGHYMEALVLSYQMDLEGIRPNSVTFLWILGACSNLGDVETG 123

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R +H  ++ +G+D    V+++++ MY KC  L +A+K+FD +  ++VV+W ++I  + Q 
Sbjct: 124 RKIHARMVFLGWDTDTVVSTAILGMYSKCEKLGDAKKIFDSLRRKDVVSWTAIITAFSQL 183

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G    A+ +F+EM L+GV+P   +  +IL+A   +DAL++G + +  A+  G   D  +G
Sbjct: 184 GRPRVALELFWEMDLDGVKPNESTFVNILAACTYMDALEDGDKLYKRAISCGYGADVFVG 243

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------ 363
           S+ +  YS+ G L +A+  F  + E+   +WN ++ +Y+Q G                  
Sbjct: 244 STAVTMYSRFGNLVEAKAAFDHLREKSTGSWNAIVRAYIQHGHISQALSLYKEMDVHGAE 303

Query: 364 -------------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNS 392
                                          + D +  S+IV MYAKC  I++A   F  
Sbjct: 304 PDTFTHVCLLGACSSLGALEEGERIHARMGDKPDGLAGSAIVAMYAKCGGIEHAMTAFTK 363

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG---------- 442
           +   +VV+WN L+A Y       EA  L++ M LEG+  +I +++SV+            
Sbjct: 364 MSSSNVVVWNALIAGYVQGEHWQEALDLYHAMNLEGLEADIYTFSSVLGACSGAKDLSEG 423

Query: 443 -------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
                                    F + G +  A +MF  M S     N ++W ++++ 
Sbjct: 424 RAVHARIVSRGLEVVVPLQNGLVNMFAKCGSLTLALEMFRGMAS----RNTVSWNSMVTA 479

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA--SLRNGRAIHGYLIRHDLC 535
             Q+  G  A   F+EML  G +P   T T  L+ C+  A  SL  G+A+H  +    + 
Sbjct: 480 FCQHGDGGGAFELFKEMLLEGGEPHEQTFTSILNFCSHSACSSLDQGKALHQRITASGVD 539

Query: 536 LPTPIVTSLVDMY-----AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
               + T L+ MY     AKCG +  A+ VFD    K +  + AMI GYA H     AL 
Sbjct: 540 SDPTVATCLLTMYLLNALAKCGALDDARAVFDGIRGKNVLSWTAMIVGYAQHARGDGALE 599

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF+ ++  GI  D ITFT+IL+ACSH GLV  G E F  M  DH + PS EH+  V+++L
Sbjct: 600 LFREMELDGIQADEITFTSILHACSHRGLVRVGREYFRSMVEDHAIAPSAEHYNVVMDML 659

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ----LEPDNP 706
           +R G + EA  V    P      ++  + S+ V   ++ +       LLQ     E D  
Sbjct: 660 ARAGRVGEAEEVAKVFPAIKHVALMTLVSSSQVHGVDSSVVAR-KRLLLQGDGSCEKDTA 718

Query: 707 GNYVALSNAY 716
            +Y+ALSN++
Sbjct: 719 SSYIALSNSF 728


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 191/589 (32%), Positives = 319/589 (54%), Gaps = 42/589 (7%)

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR----VFYEM 274
           +A SL+D+  + G L EA    D +  R V     + V  ++     +  +    V   +
Sbjct: 30  IAQSLLDLSSQ-GRLPEALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHL 88

Query: 275 TLEGVE-PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVG 332
              G + PT +    ++         + G+   A  V + M + N+   + ++  Y+K+G
Sbjct: 89  KHTGFKRPTTIVANHLIGMY-----FECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLG 143

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA-----------------SSIVD 375
            + +A  +F RM+E+D+V+WN ++ +Y + G  +  +                  + ++ 
Sbjct: 144 DVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLI 203

Query: 376 MYAKCERIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
           +  K + +  AKQV   ++    L ++VL ++++ AYA  G    A  LF +M    +  
Sbjct: 204 LCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEM----LVK 259

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           +I +W +++ G+ + G MN A ++F QM     + N ++W+ LISG  +NS G+EA+ +F
Sbjct: 260 DIHAWTTIVSGYAKWGDMNSASELFHQMP----EKNPVSWSALISGYARNSLGHEALDYF 315

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
            +M++ GI P   T +  L AC  +A+L++G+ +HGYLIR      T +V+SL+DMY+KC
Sbjct: 316 TKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKC 375

Query: 552 GNIHQAKRVFDISPSKE-LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           G +  +  VF +  +K+ + V+N MIS  A +G   +A+ +F ++ + G+ PD ITF  I
Sbjct: 376 GMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVI 435

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L+ACSH+GLV EGL  F  M  DH V P  EH+ C+++LL R G   E +  +  M C P
Sbjct: 436 LSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKP 495

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
           D  +  +LL  C   N  EL   ++E +++L+P +   YV+L++ YA  G+W  V +VR+
Sbjct: 496 DDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRE 555

Query: 731 IMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           +M EK +RK  G SWI +G + H F+A DR HP  EEIY  L  L  H 
Sbjct: 556 LMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLARHT 604



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/489 (23%), Positives = 214/489 (43%), Gaps = 88/489 (17%)

Query: 54  LSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG---- 109
           LS + ++ EA+  L  +  R  ++   I+ +LL+ C   +    G+ +H  +   G    
Sbjct: 37  LSSQGRLPEALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRP 96

Query: 110 --------------------------DFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
                                         RN Y    ++  YAK   ++ A +LF R+ 
Sbjct: 97  TTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMM 156

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            K+V SW  I+    + G   +A+  + + +   +  + F    VL  C  L  +   + 
Sbjct: 157 EKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQ 216

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV--------------- 248
           VHG VL  GF   + ++SS++D Y KCG++  AR +FD M+ +++               
Sbjct: 217 VHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGD 276

Query: 249 ----------------VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
                           V+W+++I GY +N L  EA+  F +M   G+ P + + +S L A
Sbjct: 277 MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCA 336

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVT 351
            A++ AL  GKQ H   +      + ++ SS+I+ YSK G+LE +  VF  M  ++D+V 
Sbjct: 337 CASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVV 396

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAA 407
           WN +I++  Q+G                    + A Q+FN ++      D + +  +L+A
Sbjct: 397 WNTMISALAQNGHG------------------EKAMQMFNDMVESGLKPDRITFIVILSA 438

Query: 408 YADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
            +  G   E  R F  M  + G+ P+   ++ +I    R G   E  +   +++++  +P
Sbjct: 439 CSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVN---ELENMSCKP 495

Query: 467 NLITWTTLI 475
           +   W+ L+
Sbjct: 496 DDRVWSALL 504



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 153/313 (48%), Gaps = 31/313 (9%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           + + +K+    EA+ L  + +  +       +  +L  CV  +++   +Q+H ++L  G 
Sbjct: 167 VLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGF 226

Query: 110 ----------------------------DFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
                                       +   ++ +  T +V  YAK   ++ AS LF +
Sbjct: 227 LSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQ 286

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  KN  SW+A+I    R  L  +AL  F +M + G++P+ +   + L AC ++  +  G
Sbjct: 287 MPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHG 346

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQ 260
           + VHGY+++  F     V SSLIDMY KCG LE +  VF  M   ++VV WN+MI    Q
Sbjct: 347 KQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQ 406

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNV 319
           NG  E+A+++F +M   G++P R++   ILSA ++   + EG +   A+   +G+  D  
Sbjct: 407 NGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQE 466

Query: 320 LGSSIINFYSKVG 332
             S +I+   + G
Sbjct: 467 HYSCLIDLLGRAG 479


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 232/789 (29%), Positives = 380/789 (48%), Gaps = 99/789 (12%)

Query: 82   YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF-- 139
            +  LL+ C    ++ +G+ IH  I+  G  +  + ++ T LV  Y KC  LD A ++F  
Sbjct: 564  FPSLLKACSSLTNLSSGKTIHGSIIVLG--WRYDPFIATSLVNMYVKCGFLDYAVQVFDG 621

Query: 140  ---CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
                 +  ++V    ++I    +    ++ +  F  M   GV PD F L  V+      G
Sbjct: 622  WSQSGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEG 681

Query: 197  WVGF----GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAW 251
               F    G+ +HGY+L+   DG  F+ ++LIDMY K G   +A +VF  +  + NVV W
Sbjct: 682  --NFRREDGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLW 739

Query: 252  NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
            N MIVG+  + + E ++ ++       V+    S T  L A +  +    G+Q H   V 
Sbjct: 740  NVMIVGFGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVK 799

Query: 312  NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------- 363
             G++ D  + +S+++ YSK G++ +AE VFS +V++ +  WN ++A+YV++         
Sbjct: 800  MGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALEL 859

Query: 364  --------------------------------------------QSDVVVASSIVDMYAK 379
                                                        QS   + S+++ +Y+K
Sbjct: 860  FGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSK 919

Query: 380  CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE--GISPNIISWN 437
            C    +A  VF S+  +D+V W +L++     G+  EA ++F  M+ +   + P+     
Sbjct: 920  CGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMT 979

Query: 438  SVI----------LGFLRNGQMNEA---------------------KDMFLQMQSLGVQP 466
            SVI           G   +G M +                       +M L++ +     
Sbjct: 980  SVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPE 1039

Query: 467  NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
            N++ W ++IS  ++N+    +I  F  ML  GI P + +IT  L A +  ASL  G+++H
Sbjct: 1040 NIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLH 1099

Query: 527  GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
            GY +R  +   T +  +L+DMY KCG    A+ +F     K L  +N MI GY  HG   
Sbjct: 1100 GYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCR 1159

Query: 587  EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
             AL+LF  L++ G  PD +TF ++++AC+H+G V EG   F  M  D+ ++P MEH+  +
Sbjct: 1160 TALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANM 1219

Query: 647  VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
            V+LL R G L+EA   I  MP + D+ I   LLS     +  EL    +E LL++EP+  
Sbjct: 1220 VDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERG 1279

Query: 707  GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTE 766
              YV L N Y  +G  NE +++   MKE+GL+K PGCSWI++ +  +VF +   S P   
Sbjct: 1280 STYVQLINLYMEAGLKNEAAKLLGEMKERGLQKQPGCSWIEVSDISNVFFSGGSSSPIKA 1339

Query: 767  EIYATLALL 775
            EI+  L  L
Sbjct: 1340 EIFKVLNRL 1348



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 158/584 (27%), Positives = 278/584 (47%), Gaps = 111/584 (19%)

Query: 174  QEDGVSP---DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            + DG SP     F  P++LKAC +L  +  G+ +HG ++ +G+    F+A+SL++MY KC
Sbjct: 550  KHDGSSPLWTSVFTFPSLLKACSSLTNLSSGKTIHGSIIVLGWRYDPFIATSLVNMYVKC 609

Query: 231  GDLEEARKVFD-----GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
            G L+ A +VFD     G+ AR+V   NSMI GY +    +E +  F  M + GV P   S
Sbjct: 610  GFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFS 669

Query: 286  ---VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
               V S+L    N    ++GKQ H   + N ++ D+ L +++I+ Y K GL  DA  VF 
Sbjct: 670  LSIVVSVLCKEGNFRR-EDGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFV 728

Query: 343  RMVER-DIVTWNLLIASY------------------------------------------ 359
             + ++ ++V WN++I  +                                          
Sbjct: 729  EIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSA 788

Query: 360  ---------VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                     V+ G  +D  V++S++ MY+KC  +  A+ VF+ ++ + + +WN ++AAY 
Sbjct: 789  FGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYV 848

Query: 410  DLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK----------- 453
            +      A  LF  M+ + + P+  + ++VI      G    G+   A+           
Sbjct: 849  ENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPA 908

Query: 454  ----------------DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML-- 495
                            D +L  +S+  + +++ W +LISGL +N    EA+  F +M   
Sbjct: 909  IESALLTLYSKCGCDTDAYLVFKSME-EKDMVAWGSLISGLCKNGKFKEALKVFGDMKDD 967

Query: 496  ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
            +  +KP +  +T  ++AC  + +L  G  +HG +I+    L   + +SL+D+Y+KCG   
Sbjct: 968  DDSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPE 1027

Query: 556  QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
             A +VF     + +  +N+MIS Y+ + L   ++ LF  +  +GI PDS++ T++L A S
Sbjct: 1028 MALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAIS 1087

Query: 616  HA-----GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
                   G    G  L +G+ SD  +K ++      +++  +CG
Sbjct: 1088 STASLLKGKSLHGYTLRLGIPSDTHLKNAL------IDMYVKCG 1125


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 199/688 (28%), Positives = 344/688 (50%), Gaps = 100/688 (14%)

Query: 188 VLKACGALGWVGFGRAVHGYVL-------KVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           ++ AC  L  +  GR VH +++            G   + + LI MYG+C   + AR+VF
Sbjct: 50  LVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVF 109

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D M ARN V+W S+I  +VQNG   +A+ +F  M   G    + ++ S + A   L  + 
Sbjct: 110 DEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVG 169

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G+Q HA A+ +    D ++ ++++  YSK GL++D  ++F R+ ++D+++W  +IA + 
Sbjct: 170 TGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFA 229

Query: 361 QSG-----------------------------------------------------QSDV 367
           Q G                                                       D+
Sbjct: 230 QQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDL 289

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
            V  S+ DMYA+ + +D+A+  F  I   D+V WN+++ AY+  G   EA  LF +M+  
Sbjct: 290 YVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDS 349

Query: 428 GISPNIIS-----------------------------------WNSVILGFLRNGQMNEA 452
           G+ P+ I+                                    NS++  + R   ++ A
Sbjct: 350 GLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSA 409

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
            D+F +++      +++TW ++++   Q++   E +  F  + ++       ++   LSA
Sbjct: 410 MDVFHEIK----DQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSA 465

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI-SPSKELPV 571
             ++      + +H Y  +  L     +  +L+D YAKCG++  A R+F+I   ++++  
Sbjct: 466 SAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFS 525

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           ++++I GYA  G A EAL LF  ++  GI P+ +TF  +L ACS  G VNEG   +  M 
Sbjct: 526 WSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIME 585

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
            ++ + P+ EH  C+V+LL+R G L EA   I  MP +PD  +  +LL+     N+ E+ 
Sbjct: 586 PEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMG 645

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           +  +E +L ++P +   YV L N YAASG WNE ++++  M+  G++K+PG SW+++  E
Sbjct: 646 KRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGE 705

Query: 752 LHVFVACDRSHPKTEEIYATLALLGMHV 779
           L VF+  DRSHP++EEIYA L L+GM +
Sbjct: 706 LKVFIVEDRSHPESEEIYAMLELIGMEM 733


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 195/610 (31%), Positives = 329/610 (53%), Gaps = 37/610 (6%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD---LEEARKVFDGMIARNVVAWNSMIVG 257
           G  +H   +  G    +F  S LI  +   G    L+ +R +F  +   N+  WN+MI G
Sbjct: 25  GLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRG 84

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEP-TRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           Y ++    EAI ++  M  +G+ P    +   +L++ A L +L+ G + H+  + +G E 
Sbjct: 85  YSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFES 144

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA------ 370
           D  + +++I+ YS  G L  A  +F   + RD+V++N +I  Y +  Q +  +       
Sbjct: 145 DLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ 204

Query: 371 --------SSIVDMYAKCERIDNAK-------QVFNSI--ILRDVVLWNTLLAAYADLGR 413
                    + V +++ C  ++          QV+ ++  I  +++L + ++  YA  G 
Sbjct: 205 NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGL 264

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
              A R+F  M   G S +  +W+S++ G+ R G++N A+ +F  M     + ++I+WT 
Sbjct: 265 INIAERVFSTM---GTSKSAAAWSSMVCGYARCGEINVARKLFNHMH----ERDVISWTA 317

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +ISG +Q    +EA+  F+EM   GIKP   T+   LSAC  + +   G+ ++   I + 
Sbjct: 318 MISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENG 377

Query: 534 LCLPTPIVTSLV-DMYAKCGNIHQAKRVFDI--SPSKELPVYNAMISGYAMHGLAVEALA 590
           +     I+T+ V DMYAKCG+I  A  +F       K   V+N+MI+G A HGL   A+ 
Sbjct: 378 VFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAIT 437

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           +F+ L   G+ PD +TF  +L AC H+GL+ EG +LF  MF+ + +KP MEH+GC+V+LL
Sbjct: 438 VFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLL 497

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
            R G L+EA  ++  MP + ++ I  +LLS C      ++ E   + LL++E  +   YV
Sbjct: 498 GRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYV 557

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            LSN  A + +W E  QVR +M++ G+RK PG S+I++G  +H FVA D+SHP+ +EI  
Sbjct: 558 LLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIEL 617

Query: 771 TLALLGMHVR 780
            L  + M ++
Sbjct: 618 MLKDMAMRLK 627



 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 156/580 (26%), Positives = 266/580 (45%), Gaps = 97/580 (16%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYA---KCDALDVASRLFCR 141
           LL+ C   +    G QIHA+ + NG       +  ++L+ F++     D LD +  LF +
Sbjct: 15  LLESC---KSFKQGLQIHAQTIVNG--LHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQ 69

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP-DNFVLPNVLKACGALGWVGF 200
           +   N+F W  +I    R     +A++ ++ M   G++P +NF  P +L +C  L  +  
Sbjct: 70  IDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEP 129

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G  VH +++K GF+  +FV ++LI +Y   G+L  AR +FD  + R++V++N+MI GY +
Sbjct: 130 GHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 189

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN-- 318
               E A+ +F EM   G+ P   +  ++ S  + L+  + GKQ HA    N   +D+  
Sbjct: 190 VNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNI 249

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
           +L S+I++ Y+K GL+  AE VFS M   +    W                  SS+V  Y
Sbjct: 250 LLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAW------------------SSMVCGY 291

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           A+C  I+ A+++FN +  RDV+ W  +++ Y+  G+  EA  LF +M+  GI P+ ++  
Sbjct: 292 ARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLV 351

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGV--QPNLIT------------------------- 470
           +V+    R G  +  K ++ Q    GV  Q  ++T                         
Sbjct: 352 AVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGK 411

Query: 471 -------WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
                  + ++I+GL Q+  G  AI  F+E++ TG+KP   T    L AC     +  G+
Sbjct: 412 NMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGK 471

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
                           +  S+ + Y              I P  E   Y  M+     +G
Sbjct: 472 ---------------KLFESMFNAYG-------------IKPQMEH--YGCMVDLLGRYG 501

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
              EA  L   +Q+   + +S+ +  +L+AC   G V  G
Sbjct: 502 CLEEAYDL---VQKMPFEANSVIWRALLSACRTHGNVKIG 538



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 127/283 (44%), Gaps = 24/283 (8%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  S+  Q  EA++L  EM+    +        +L  C        G++++ + 
Sbjct: 314 SWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQY 373

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVFSWAAIIGLNCRVGLS 163
           ++NG  F +N  +   ++  YAKC ++D A  +F R+   +K  F + ++I    + GL 
Sbjct: 374 IENG-VFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLG 432

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-----HGYVLKVGFD--GC 216
           E A+  F E+   G+ PD      VL ACG  G +  G+ +     + Y +K   +  GC
Sbjct: 433 ETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGC 492

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG---LNEEAIRVFY 272
                 ++D+ G+ G LEEA  +   M    N V W +++     +G   + E A +   
Sbjct: 493 ------MVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLL 546

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
           EM  E     R  + S + A AN    +E +Q   V   +G+ 
Sbjct: 547 EM--EAQHGARYVLLSNILADAN--QWEEARQVRKVMEDHGIR 585


>gi|147820082|emb|CAN67135.1| hypothetical protein VITISV_005195 [Vitis vinifera]
          Length = 800

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 207/667 (31%), Positives = 319/667 (47%), Gaps = 108/667 (16%)

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H   +K G    ++ A+++I  Y KCG++  A K+FD    R+ V+WN+MI G V  G  
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNF 81

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           E A+     M   G      S  SIL   A +  ++ G+Q H++ V  G E +   GS++
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSAL 141

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------------- 364
           ++ Y+K   +EDA  VF  +  R+ VTWN LI+ Y   G                     
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEIDD 201

Query: 365 --------------------------------SDVVVASSIVDMYAKCERIDNAKQVFNS 392
                                           SD  V ++I+  Y++C  I++A++VF+ 
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDG 261

Query: 393 II-LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
            I  RD+V WN++LAAY    +  EA  LF +MQ+ G  P+I ++ SVI          +
Sbjct: 262 AIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAHQGQ 321

Query: 452 AKD----------------------MFLQMQSLGVQPNL-----------ITWTTLISGL 478
            K                       M+L+  S  +   L           ++W ++++G 
Sbjct: 322 GKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGF 381

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
           +Q+    +A+ FF+ M    +       +  L +C+D+A+L+ G+ +H            
Sbjct: 382 SQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVH------------ 429

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
                       CG I  A++ FD +P      +N++I GYA HG    AL LF  ++ +
Sbjct: 430 ----------VLCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDR 479

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
            +  D ITF  +L ACSH GLV EG      M SD+ + P MEH+ C+++LL R G LDE
Sbjct: 480 RVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDE 539

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           A  +I  MP +PDA +  +LL  C    + ELA  ++ HLL+LEP+    YV LS+ +  
Sbjct: 540 AKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGH 599

Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMH 778
             RWNE + ++ +MKE+G++K PG SWI++  E+H F A DRSHP  EEIY  L  L   
Sbjct: 600 LRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVHSFNAEDRSHPNCEEIYLRLGDLMEE 659

Query: 779 VRLVSKV 785
           +R +  V
Sbjct: 660 IRRLDYV 666



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 127/503 (25%), Positives = 225/503 (44%), Gaps = 39/503 (7%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           A++ L  MK   F +    +G +L+G      +  GQQ+H+ I+K G  +  N +  + L
Sbjct: 84  ALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMIVKIG--YEGNVFAGSAL 141

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  YAKC+ ++ A  +F  + ++N  +W A+I     VG    A      M+ +GV  D+
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEIDD 201

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
                +L              VH  ++K G      V +++I  Y +CG +E+A +VFDG
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDG 261

Query: 243 MI-ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            I  R++V WNSM+  Y+ N   EEA  +F EM + G EP   + TS++SA+       +
Sbjct: 262 AIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAHQGQ 321

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFY--SKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
           GK  H + +  G+E    + +S+I  Y  S    +++A  +F  +  +D V+WN ++  +
Sbjct: 322 GKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGF 381

Query: 360 VQSGQSDVVVA--------SSIVDMYA----------------------KCERIDNAKQV 389
            QSG S+  +           ++D YA                       C  I++A++ 
Sbjct: 382 SQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLCGVIEDARKS 441

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F++      + WN+L+  YA  GR   A  LF+ M+   +  + I++ +V+      G +
Sbjct: 442 FDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLV 501

Query: 450 NEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
            E       M+S  G+ P +  +  +I  L +    +EA    + M     +P       
Sbjct: 502 EEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAM---PFEPDAMVWKT 558

Query: 509 ALSACTDVASLRNGRAIHGYLIR 531
            L AC     +     +  +L+ 
Sbjct: 559 LLGACRTCGDIELASQVASHLLE 581



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 187/426 (43%), Gaps = 92/426 (21%)

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           + ++  AL      H +A+ +G        ++II+ Y+K G +  A  +F    +RD V+
Sbjct: 8   SQSSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVS 67

Query: 352 WNLLIA----------------------------------------SYVQSGQ------- 364
           WN +IA                                         YV+ GQ       
Sbjct: 68  WNTMIAGXVNFGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMIV 127

Query: 365 -----SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
                 +V   S+++DMYAKCER+++A +VF SI +R+ V WN L++ YA +G  G A  
Sbjct: 128 KIGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFW 187

Query: 420 LFYQMQLEGI-----------------------------------SPNIISWNSVILGFL 444
           L   M+LEG+                                   + +    N++I  + 
Sbjct: 188 LLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYS 247

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
             G + +A+ +F          +L+TW ++++    N+   EA   F EM   G +P   
Sbjct: 248 ECGSIEDAERVF---DGAIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGFEPDIY 304

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK--CGNIHQAKRVFD 562
           T T  +SA  + A    G+++HG +I+  L    PI  SL+ MY K    ++ +A  +F+
Sbjct: 305 TYTSVISAAFEXAHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFE 364

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
              +K+   +N++++G++  GL+ +AL  F+N++ + +  D   F+ +L +CS    +  
Sbjct: 365 SLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQL 424

Query: 623 GLELFV 628
           G ++ V
Sbjct: 425 GQQVHV 430



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 145/315 (46%), Gaps = 42/315 (13%)

Query: 98  GQQIHARILKNG-DFFARNEYVETKLVVFYAK--CDALDVASRLFCRLRVKNVFSWAAII 154
           G+ +H  ++K G +F      +   L+  Y K    ++D A  +F  L  K+  SW +I+
Sbjct: 322 GKSLHGLVIKRGLEFLVP---ISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSIL 378

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD 214
               + GLSE AL  F  M+   V  D++    VL++C  L  +  G+ VH  VL     
Sbjct: 379 TGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVH--VL----- 431

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
                          CG +E+ARK FD     + +AWNS+I GY Q+G  + A+ +F+ M
Sbjct: 432 ---------------CGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLM 476

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG------SSIINFY 328
               V+   ++  ++L+A +++  ++EG      + +  ME D  +       + +I+  
Sbjct: 477 KDRRVKLDHITFVAVLTACSHIGLVEEG-----WSFLKSMESDYGIPPRMEHYACMIDLL 531

Query: 329 SKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAK 387
            + G L++A+ +   M  E D + W  L+ +    G  D+ +AS +     + E  ++  
Sbjct: 532 GRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCG--DIELASQVASHLLELEPEEHCT 589

Query: 388 QVFNSIILRDVVLWN 402
            V  S +   +  WN
Sbjct: 590 YVLLSSMFGHLRRWN 604



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 47/241 (19%), Positives = 95/241 (39%), Gaps = 42/241 (17%)

Query: 27  QTHLTKLRESDNSYESL----YKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY 82
           ++H   + E+ N +ESL    + S+   ++  S+     +A+     M+ +   I    +
Sbjct: 350 KSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAF 409

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
             +L+ C     +  GQQ+H                          C  ++ A + F   
Sbjct: 410 SAVLRSCSDLATLQLGQQVHVL------------------------CGVIEDARKSFDAT 445

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
              +  +W ++I    + G  + AL  F  M++  V  D+     VL AC  +G V  G 
Sbjct: 446 PKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGW 505

Query: 203 AV-------HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSM 254
           +        +G   ++    C      +ID+ G+ G L+EA+ + + M    + + W ++
Sbjct: 506 SFLKSMESDYGIPPRMEHYAC------MIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTL 559

Query: 255 I 255
           +
Sbjct: 560 L 560


>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
 gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
          Length = 1096

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 222/785 (28%), Positives = 371/785 (47%), Gaps = 108/785 (13%)

Query: 85   LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
            ++  C    D+  G+  H RI++ G  F    +V   LV  Y KC ++D A  +F ++R+
Sbjct: 234  VVDACSNLLDLPRGKSTHERIIRTG--FDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRL 291

Query: 145  KNV---FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG-- 199
            ++V   +SW  II      G   +A + F +M  +GV P+      VL+AC  L      
Sbjct: 292  RDVLSVYSWTVIIAAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRACTTLAQCEKI 351

Query: 200  FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGY 258
            F R  H     +G +    + ++ +  + K GDL  AR VF+ +  +RNVV+W  MI  Y
Sbjct: 352  FARVKH-----LGLELDTTLGTAFVSTFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAY 406

Query: 259  VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             Q G    A  ++  M     EP  V+  +++ +    + L   +Q HA  V +G E D 
Sbjct: 407  AQQGFIRAAFDLYKRMD---CEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFESDV 463

Query: 319  VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
            VL   ++  Y K G ++ A  +F  + ER +V WN +++++  +G               
Sbjct: 464  VLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLSAFASNGCYERSLKLYERMLLE 523

Query: 364  -------------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNS 392
                                           + D+   ++ V  YA+C  +  AK  F++
Sbjct: 524  GTKPDKITYLAVLDACQSVSEARRYAATFELELDIAARNAAVSAYARCGSLKEAKAAFDA 583

Query: 393  IILRD-VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW--------------- 436
            I  ++  V WN +++  A  G S +A   F++M+LEG+  N +++               
Sbjct: 584  IQWKNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRANSVTYLASLEACSSLKDLTR 643

Query: 437  -------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
                               N+VI  + + G ++EA D F++M     + ++I+W T+I+ 
Sbjct: 644  GRQLHARILLENIHEANLSNAVINMYGKCGSLDEAMDEFVKMP----ERDVISWNTMIAT 699

Query: 478  LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
              Q+  G +A+ FF++M   G  P   T   A+ AC  V SL  G+ IH  +     CL 
Sbjct: 700  YAQHGSGRQALEFFKQMDLEGWTPDRATYLGAIDACGSVPSLALGKTIHSIVATAAPCLE 759

Query: 538  TP--IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
                + T+LV MYA+CG++H AK VF  S S+ L  ++ +I+  A HG   EAL LF+ +
Sbjct: 760  QDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENEALDLFREM 819

Query: 596  QQKGIDPDSITFTNILNACSHAGLVNE-GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
            Q +G  PD++TF+ ++ ACS  G+V + G  +F  +   + V  S EH+GC+V +L R G
Sbjct: 820  QLQGTKPDALTFSTLVAACSRRGVVKDGGRRIFDALGRVYPVSASAEHYGCMVEVLGRAG 879

Query: 655  NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA-LS 713
             L+EA  +I  MP      I  +LL+ C +  + E     +    QL+P +    +A L+
Sbjct: 880  KLEEAEGLIQGMPRKASGAIWMALLAACNRRGDLERGIRAANRAQQLDPGSFAASMAMLA 939

Query: 714  NAYAASGRWNEVSQVRDIMKEKGLRKNPGC-SWIQIGEELHVFVACDR--SHPKTEEIYA 770
              Y A+GRW + ++VR  ++ +  R+ PG  SWI++   +H F   D     P+ ++I  
Sbjct: 940  ELYGAAGRWEDAARVRKAVESRNARREPGGRSWIEVNNRVHEFGEDDDRLQGPRLDKIRG 999

Query: 771  TLALL 775
             L  L
Sbjct: 1000 ELQRL 1004



 Score =  285 bits (730), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 206/783 (26%), Positives = 365/783 (46%), Gaps = 116/783 (14%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I++ +KE  +RE +    +M+    +    ++  +L  C     +  G+ IH  +
Sbjct: 94  SWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDCV 153

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +  G      + V   +V  Y KC  +  A  +F RL  +N+ SW A+I  N + G  + 
Sbjct: 154 VLAG---METQVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKD 210

Query: 166 ALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
           A+  F  M  DG V P++    +V+ AC  L  +  G++ H  +++ GFD  +FV +SL+
Sbjct: 211 AMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLV 270

Query: 225 DMYGKCGDLEEARKVFDGMIARNVV---AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           +MYGKCG ++ AR VF+ M  R+V+   +W  +I  +  NG   EA  +FY+M LEGV P
Sbjct: 271 NMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLEAFVLFYKMDLEGVLP 330

Query: 282 TRVSVTSILSASANLDALDE--GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            +V+  ++L A   L   ++   +  H      G+ELD  LG++ ++ ++K+G L  A  
Sbjct: 331 NKVTFVTVLRACTTLAQCEKIFARVKHL-----GLELDTTLGTAFVSTFAKLGDLAAARD 385

Query: 340 VFSRM-VERDIVTWNLLIASYVQSG----------------------------------- 363
           VF  +   R++V+W ++I +Y Q G                                   
Sbjct: 386 VFENLGSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCEPNAVTFMAVMDSCLRPEDLP 445

Query: 364 --------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                         +SDVV+   +V MY KC  +D+A  +F ++  R VV WN++L+A+A
Sbjct: 446 RAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLSAFA 505

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISW-----------------------------NSVI 440
             G    + +L+ +M LEG  P+ I++                             N+ +
Sbjct: 506 SNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQSVSEARRYAATFELELDIAARNAAV 565

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             + R G + EAK  F  +Q    + N +TW  +ISGL Q+    +A+  F +M   G++
Sbjct: 566 SAYARCGSLKEAKAAFDAIQ---WKNNAVTWNAMISGLAQHGESKQALECFWKMELEGVR 622

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            ++ T   +L AC+ +  L  GR +H  ++  ++     +  ++++MY KCG++ +A   
Sbjct: 623 ANSVTYLASLEACSSLKDLTRGRQLHARILLENI-HEANLSNAVINMYGKCGSLDEAMDE 681

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F   P +++  +N MI+ YA HG   +AL  FK +  +G  PD  T+   ++AC     +
Sbjct: 682 FVKMPERDVISWNTMIATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAIDACGSVPSL 741

Query: 621 NEGLELFVGMFSDHQVKPSMEH----FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
             G  +   + +     P +E        +V + +RCG+L +A + +       +     
Sbjct: 742 ALGKTIHSIVAT---AAPCLEQDPGVATALVTMYARCGSLHDA-KSVFWRSHSRNLVTWS 797

Query: 677 SLLSTCVK-SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
           +L++ C +   E E  +   E  +QL+   P + +  S   AA  R       R ++K+ 
Sbjct: 798 NLIAACAQHGRENEALDLFRE--MQLQGTKP-DALTFSTLVAACSR-------RGVVKDG 847

Query: 736 GLR 738
           G R
Sbjct: 848 GRR 850



 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 191/687 (27%), Positives = 322/687 (46%), Gaps = 100/687 (14%)

Query: 67  LTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFY 126
           + ++K  +  + P  Y  LLQ C  ++    G+ +H  IL +G     N Y++  L+  Y
Sbjct: 14  INQLKKSSESLQPARYASLLQKCAEQKSAAAGKLVHQHILSSG--CGVNRYLQNHLIFMY 71

Query: 127 AKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
           AKC  L  A  +F  L   NVFSW A+I    + G   + L  F +MQ DG  PD FV  
Sbjct: 72  AKCGCLQDAVEVFELLPCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFS 131

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
            VL AC + G +  G+A+H  V+  G +  V V ++++++YGKCG + EA+ VF+ +  R
Sbjct: 132 TVLTACSSAGALNEGKAIHDCVVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPER 190

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQA 305
           N+V+WN++I    QNG  ++A++VF  M L+G V P   +  S++ A +NL  L  GK  
Sbjct: 191 NLVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKST 250

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV---TWNLLIASYVQS 362
           H   +  G +    +G+S++N Y K G ++ A +VF +M  RD++   +W ++IA++  +
Sbjct: 251 HERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFAHN 310

Query: 363 G-------------------------------------------------QSDVVVASSI 373
           G                                                 + D  + ++ 
Sbjct: 311 GHLLEAFVLFYKMDLEGVLPNKVTFVTVLRACTTLAQCEKIFARVKHLGLELDTTLGTAF 370

Query: 374 VDMYAKCERIDNAKQVFNSI-ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           V  +AK   +  A+ VF ++   R+VV W  ++ AYA  G    A  L+ +M  E   PN
Sbjct: 371 VSTFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCE---PN 427

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN------------------------- 467
            +++ +V+   LR   +  A+ +   M + G + +                         
Sbjct: 428 AVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFE 487

Query: 468 ------LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
                 ++ W +++S    N C   ++  ++ ML  G KP   T    L AC  V+  R 
Sbjct: 488 NLKERSVVAWNSMLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQSVSEARR 547

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISGYA 580
                 Y    +L L      + V  YA+CG++ +AK  FD    K   V +NAMISG A
Sbjct: 548 ------YAATFELELDIAARNAAVSAYARCGSLKEAKAAFDAIQWKNNAVTWNAMISGLA 601

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            HG + +AL  F  ++ +G+  +S+T+   L ACS    +  G +L   +  ++  + ++
Sbjct: 602 QHGESKQALECFWKMELEGVRANSVTYLASLEACSSLKDLTRGRQLHARILLENIHEANL 661

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMP 667
            +   V+N+  +CG+LDEA+   + MP
Sbjct: 662 SN--AVINMYGKCGSLDEAMDEFVKMP 686



 Score =  226 bits (575), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 160/618 (25%), Positives = 284/618 (45%), Gaps = 104/618 (16%)

Query: 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVAS 221
           LS +  I  ++   + + P  +   ++L+ C        G+ VH ++L  G     ++ +
Sbjct: 8   LSLQTHINQLKKSSESLQPARYA--SLLQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQN 65

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
            LI MY KCG L++A +VF+ +   NV +W ++I  Y + G   E +  F +M L+G +P
Sbjct: 66  HLIFMYAKCGCLQDAVEVFELLPCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKP 125

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
                +++L+A ++  AL+EGK  H   V+ GME   V+G++I+N Y K G + +A+ VF
Sbjct: 126 DAFVFSTVLTACSSAGALNEGKAIHDCVVLAGME-TQVVGNAIVNLYGKCGRVHEAKAVF 184

Query: 342 SRMVERDIVTWNLLIASYVQSGQ------------------------------------- 364
            R+ ER++V+WN LIA+  Q+G                                      
Sbjct: 185 ERLPERNLVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDL 244

Query: 365 ----------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV---LWNTLL 405
                           S + V +S+V+MY KC  +D+A+ VF  + LRDV+    W  ++
Sbjct: 245 PRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVII 304

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI------------------LG----- 442
           AA+A  G   EA  LFY+M LEG+ PN +++ +V+                  LG     
Sbjct: 305 AAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRACTTLAQCEKIFARVKHLGLELDT 364

Query: 443 ---------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
                    F + G +  A+D+F   ++LG   N+++WT +I    Q      A   ++ 
Sbjct: 365 TLGTAFVSTFAKLGDLAAARDVF---ENLGSSRNVVSWTVMIWAYAQQGFIRAAFDLYKR 421

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M     +P+  T    + +C     L     IH +++         +   LV MY KCG+
Sbjct: 422 M---DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGS 478

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +  A  +F+    + +  +N+M+S +A +G    +L L++ +  +G  PD IT+  +L+A
Sbjct: 479 VDSAWSIFENLKERSVVAWNSMLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDA 538

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           C     V+E    +   F   +++  +      V+  +RCG+L EA      +    +A 
Sbjct: 539 CQS---VSEA-RRYAATF---ELELDIAARNAAVSAYARCGSLKEAKAAFDAIQWKNNAV 591

Query: 674 IIGSLLSTCVKSNETELA 691
              +++S   +  E++ A
Sbjct: 592 TWNAMISGLAQHGESKQA 609



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 193/427 (45%), Gaps = 71/427 (16%)

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
           E       ++V + I++    +  Y+Q+          ++ MYAKC  + +A +VF  + 
Sbjct: 38  EQKSAAAGKLVHQHILSSGCGVNRYLQN---------HLIFMYAKCGCLQDAVEVFELLP 88

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
             +V  W  L+ AYA  G   E    F +MQL+G  P+   +++V+      G +NE K 
Sbjct: 89  CPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKA 148

Query: 455 MF-------LQMQSLG-----------------------VQPNLITWTTLISGLTQNSCG 484
           +        ++ Q +G                        + NL++W  LI+   QN   
Sbjct: 149 IHDCVVLAGMETQVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHC 208

Query: 485 NEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
            +A+  FQ M L+  ++P+  T    + AC+++  L  G++ H  +IR        +  S
Sbjct: 209 KDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNS 268

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKE-LPVYN--AMISGYAMHGLAVEALALFKNLQQKGI 600
           LV+MY KCG++  A+ VF+    ++ L VY+   +I+ +A +G  +EA  LF  +  +G+
Sbjct: 269 LVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLEAFVLFYKMDLEGV 328

Query: 601 DPDSITFTNILNACS--------HAGLVNEGLEL-------FVGMFSD----HQVKPSME 641
            P+ +TF  +L AC+         A + + GLEL       FV  F+        +   E
Sbjct: 329 LPNKVTFVTVLRACTTLAQCEKIFARVKHLGLELDTTLGTAFVSTFAKLGDLAAARDVFE 388

Query: 642 HFGCVVNLLS---------RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
           + G   N++S         + G +  A  +   M C+P+A    +++ +C++  +   AE
Sbjct: 389 NLGSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCEPNAVTFMAVMDSCLRPEDLPRAE 448

Query: 693 YISEHLL 699
            I  H++
Sbjct: 449 QIHAHMV 455



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 15/234 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I++ ++    R+A++   +M    +      Y   +  C     +  G+ IH+ +
Sbjct: 692 SWNTMIATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAIDACGSVPSLALGKTIHSIV 751

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
                   ++  V T LV  YA+C +L  A  +F R   +N+ +W+ +I    + G   +
Sbjct: 752 ATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENE 811

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV-GFGRAVH---GYVLKVGFD----GCV 217
           AL  F EMQ  G  PD      ++ AC   G V   GR +    G V  V       GC 
Sbjct: 812 ALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGGRRIFDALGRVYPVSASAEHYGC- 870

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVA-WNSMIVGYVQNGLNEEAIRV 270
                ++++ G+ G LEEA  +  GM  +   A W +++    + G  E  IR 
Sbjct: 871 -----MVEVLGRAGKLEEAEGLIQGMPRKASGAIWMALLAACNRRGDLERGIRA 919


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 208/628 (33%), Positives = 335/628 (53%), Gaps = 22/628 (3%)

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
           V  + S   I+      G     L  F++M E  +  D      VL     L  +  G+ 
Sbjct: 284 VSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQ 343

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           VH   LK+G D  + V++SLI+MY K   +  AR VF+ M  R++++WNS+I G  Q+ L
Sbjct: 344 VHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDL 403

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANL-DALDEGKQAHAVAVINGMELDNVLGS 322
             EA+ +F ++   G++P   ++TS+L A+++L + L   KQ H  A+      D+ + +
Sbjct: 404 EVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVST 463

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
           ++I+ YS+   +++AEV+F R    D+V WN +++ Y QS      +    + M+ + ER
Sbjct: 464 ALIDAYSRNRCMKEAEVLFGRN-NFDLVAWNAMMSGYTQSHDGHKTLELFAL-MHKQGER 521

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG 442
            D            D  L  T+L     L    +  ++       G   ++   + ++  
Sbjct: 522 SD------------DFTL-ATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDM 568

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
           +++ G M+ A+  F    S+ V P+ + WTTLISG  +N     A+  F +M   G+ P 
Sbjct: 569 YVKCGDMSAAQFAF---DSIPV-PDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPD 624

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV-TSLVDMYAKCGNIHQAKRVF 561
             TI     A + + +L  GR IH   ++ + C   P V TSLVDMYAKCG+I  A  +F
Sbjct: 625 EFTIATLAKASSCLTALEQGRQIHANALKLN-CTSDPFVGTSLVDMYAKCGSIDDAYCLF 683

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
                  +  +NAM+ G A HG   EAL LFK ++  GI PD +TF  +L+ACSH+GLV+
Sbjct: 684 KRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVS 743

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           E  +    M  D+ +KP +EH+ C+ + L R G + EA  +I +M  +  A +  +LL+ 
Sbjct: 744 EAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAA 803

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C    +TE  + ++  LL+LEP +   YV LSN YAA+ +W+E+   R +MK   ++K+P
Sbjct: 804 CRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDP 863

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIY 769
           G SWI++  ++H+FV  DRS+P+TE IY
Sbjct: 864 GFSWIEVKNKIHLFVVDDRSNPQTELIY 891



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 170/651 (26%), Positives = 299/651 (45%), Gaps = 99/651 (15%)

Query: 85  LLQGCVYKRDMYTGQQIHARIL---KNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
            L+  +   D+  G+  HARIL   +N + F  N      L+  Y+KC +L  A R+F +
Sbjct: 52  FLRDAISTSDLMLGKCTHARILALEENPERFLVN-----NLISMYSKCGSLTYARRVFDK 106

Query: 142 LRVKNVFSWAAIIGLNCRV--GLSE---KALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
           +  +++ SW +I+    +   G+ E   +A + F  +++D V      L  +LK C   G
Sbjct: 107 MPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG 166

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
           +V    + HGY  K+G DG  FVA +L+++Y K G ++E R +F+ M  R+VV WN M+ 
Sbjct: 167 YVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLK 226

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVS------VTSILSASANLDALDEGKQAHAVAV 310
            Y++ G  EEAI +       G+ P  ++      ++   S +  + + + G  A AV+ 
Sbjct: 227 AYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSE 286

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI----VTWNLLIASYVQ----- 361
           I       +  + I++ Y   G        F  MVE D+    VT+ L++A+ V+     
Sbjct: 287 I-------ISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLA 339

Query: 362 SGQS------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
            GQ              + V++S+++MY K  +I  A+ VFN++  RD++ WN+++A  A
Sbjct: 340 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIA 399

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSV------------------------------ 439
                 EA  LF Q+   G+ P+  +  SV                              
Sbjct: 400 QSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADS 459

Query: 440 ------ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
                 I  + RN  M EA+ +F +        +L+ W  ++SG TQ+  G++ +  F  
Sbjct: 460 FVSTALIDAYSRNRCMKEAEVLFGRNNF-----DLVAWNAMMSGYTQSHDGHKTLELFAL 514

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M + G +    T+   L  C  + ++  G+ +H Y I+    L   + + ++DMY KCG+
Sbjct: 515 MHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGD 574

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +  A+  FD  P  +   +  +ISG   +G    AL +F  ++  G+ PD  T   +  A
Sbjct: 575 MSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKA 634

Query: 614 CSHAGLVNEGLELFVGMF-----SDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
            S    + +G ++          SD  V  S+      V++ ++CG++D+A
Sbjct: 635 SSCLTALEQGRQIHANALKLNCTSDPFVGTSL------VDMYAKCGSIDDA 679



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 165/329 (50%), Gaps = 20/329 (6%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L+ C +   +  G+Q+HA  +K+G  +  + +V + ++  Y KC  +  A   F  + V
Sbjct: 530 VLKTCGFLFAINQGKQVHAYAIKSG--YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV 587

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
            +  +W  +I      G  E+AL  F +M+  GV PD F +  + KA   L  +  GR +
Sbjct: 588 PDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQI 647

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H   LK+      FV +SL+DMY KCG +++A  +F  +   N+ AWN+M+VG  Q+G  
Sbjct: 648 HANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEG 707

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           +EA+++F +M   G++P +V+   +LSA ++      G  + A   I  M  D  +   I
Sbjct: 708 KEALQLFKQMESLGIKPDKVTFIGVLSACSH-----SGLVSEAYKYIRSMHRDYGIKPEI 762

Query: 325 INF------YSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDV--VVASSIVD 375
            ++        + GL+++AE +   M +E     +  L+A+    G ++    VA+ +++
Sbjct: 763 EHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLE 822

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTL 404
           +    E +D++  V  S +      W+ +
Sbjct: 823 L----EPLDSSAYVLLSNMYAAASKWDEM 847



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 16/156 (10%)

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G+  H  ++  +      +V +L+ MY+KCG++  A+RVFD  P ++L  +N++++ YA 
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 582 HGLAV-----EALALFKNLQQKGIDPDSITFTNILNACSHAGLVN-----EGLELFVGMF 631
               V     EA  LF+ L+Q  +    +T + +L  C H+G V       G    +G+ 
Sbjct: 125 SSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLD 184

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
            D  V       G +VN+  + G + E   +   MP
Sbjct: 185 GDDFVA------GALVNIYLKFGKVKEGRVLFEEMP 214


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 196/596 (32%), Positives = 317/596 (53%), Gaps = 33/596 (5%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDM--YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           + +H  +L+ G     F AS LI          L+ A++VFD +   N+  WN++I  Y 
Sbjct: 52  KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYA 111

Query: 260 QNGLNEEAIRVFYEMTLEGVE-PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            +    +++ +F  M  +  + P + +   ++ A++ L+ L  GK  H + +   +  D 
Sbjct: 112 SSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDV 171

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
            + +S+I+FY+K G L     VF  +  RD+V+WN +I ++VQ G               
Sbjct: 172 FILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQ 231

Query: 364 --QSDVVVASSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEA 417
             + + +    ++   AK    +  + V + I    I   + L N +L  Y   G   +A
Sbjct: 232 NVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDA 291

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            RLF +M       +I+SW ++++G+ + G+ + A+ +F  M +     ++  W  LIS 
Sbjct: 292 KRLFDKMP----EKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPN----QDIAAWNALISA 343

Query: 478 LTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
             Q     EA+  F E+ L    KP   T+   LSAC  + ++  G  IH Y+ +  + L
Sbjct: 344 YEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKL 403

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              + TSL+DMY KCG++ +A  VF     K++ V++AMI+G AMHG   +A+ALF  +Q
Sbjct: 404 NCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQ 463

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           +  + P+++TFTNIL ACSH GLV EG   F  M   + V P ++H+ C+V++L R G L
Sbjct: 464 EDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLL 523

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           +EA+ +I  MP  P A + G+LL  C       LAE     L++LEP N G YV LSN Y
Sbjct: 524 EEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIY 583

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           A +G+W+ VS +R +M++ GL+K PGCS I++   +H F+  D SHP  ++IYA L
Sbjct: 584 AKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKL 639



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/529 (26%), Positives = 259/529 (48%), Gaps = 73/529 (13%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYA--KCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           +QIHA++L+ G FF  + +  ++L+   A     +LD A ++F ++   N+++W  +I  
Sbjct: 52  KQIHAQMLRTGLFF--DPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRA 109

Query: 157 NCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
                   ++L+ F+ M  +    PD F  P ++KA   L  +  G+A HG V+KV    
Sbjct: 110 YASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGS 169

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            VF+ +SLI  Y KCG+L    +VF  +  R+VV+WNSMI  +VQ G  EEA+ +F EM 
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            + V+P  +++  +LSA A     + G+  H+    N +     L +++++ Y+K G +E
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVE 289

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
           DA+ +F +M E+DIV+W  ++  Y + G+ D                   A+ +F+++  
Sbjct: 290 DAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDA------------------AQGIFDAMPN 331

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS-PNIISWNSVILGFLRNGQMNEAKD 454
           +D+  WN L++AY   G+  EA  LF+++QL   + P+ ++  S +    + G M+    
Sbjct: 332 QDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGW 391

Query: 455 MFLQMQSLGVQPN-------------------------------LITWTTLISGLTQNSC 483
           + + ++  G++ N                               +  W+ +I+GL  +  
Sbjct: 392 IHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGH 451

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA-------IHGYL--IRHDL 534
           G +AI  F +M E  +KP+  T T  L AC+ V  +  GR        ++G L  ++H  
Sbjct: 452 GKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYA 511

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMH 582
           C        +VD+  + G + +A  + +  P +    V+ A++    +H
Sbjct: 512 C--------MVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIH 552



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 153/322 (47%), Gaps = 45/322 (13%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG----------- 109
            EA++L  EM+ +N +        +L  C  K D   G+ +H+ I +N            
Sbjct: 219 EEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAM 278

Query: 110 -DFFARNEYVE-----------------TKLVVFYAKCDALDVASRLFCRLRVKNVFSWA 151
            D + +   VE                 T ++V YAK    D A  +F  +  +++ +W 
Sbjct: 279 LDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWN 338

Query: 152 AIIGLNCRVGLSEKALIGFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK 210
           A+I    + G  ++AL  F E+Q      PD   L + L AC  LG +  G  +H Y+ K
Sbjct: 339 ALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKK 398

Query: 211 VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270
            G      + +SLIDMY KCGDL++A  VF  +  ++V  W++MI G   +G  ++AI +
Sbjct: 399 QGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIAL 458

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG--------S 322
           F +M  + V+P  V+ T+IL A +++  ++EG+        N MEL  V G        +
Sbjct: 459 FSKMQEDKVKPNAVTFTNILCACSHVGLVEEGR-----TFFNQMEL--VYGVLPGVKHYA 511

Query: 323 SIINFYSKVGLLEDAEVVFSRM 344
            +++   + GLLE+A  +  +M
Sbjct: 512 CMVDILGRAGLLEEAVELIEKM 533



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 17/214 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEI-YGELLQGCVYKRDMYTGQQIHARILKNG 109
           IS+  +  + +EA++L  E++        E+     L  C     M  G  IH  I K G
Sbjct: 341 ISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQG 400

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
                N ++ T L+  Y KC  L  A  +F  +  K+VF W+A+I      G  + A+  
Sbjct: 401 --MKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIAL 458

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA-------VHGYVLKVGFDGCVFVASS 222
           F +MQED V P+     N+L AC  +G V  GR        V+G +  V    C      
Sbjct: 459 FSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYAC------ 512

Query: 223 LIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
           ++D+ G+ G LEEA ++ + M +A     W +++
Sbjct: 513 MVDILGRAGLLEEAVELIEKMPMAPAASVWGALL 546


>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
 gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 197/642 (30%), Positives = 331/642 (51%), Gaps = 97/642 (15%)

Query: 200 FGRAVHGYVLKVGFD-GCVFVASSLIDMYGKCGDLEEARKVFDGMIAR--NVVAWNSMIV 256
            G+ +H ++LK         V  +L  +Y  C ++E AR VFD +     N +AW+ MI 
Sbjct: 17  LGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIR 76

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
            Y  N   E+A+ ++Y+M   GV PT+ +   +L A A L A+D+GK  H+    +    
Sbjct: 77  AYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFAT 136

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY----------------- 359
           D  + +++++FY+K G LE A  VF  M +RD+V WN +I+ +                 
Sbjct: 137 DMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMR 196

Query: 360 ------------------------VQSGQS------------DVVVASSIVDMYAKCERI 383
                                   ++ G++            D+VV + I+D+YAK + I
Sbjct: 197 RIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCI 256

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM----QLEGISPNIISWNSV 439
             A++VF+    ++ V W+ ++  Y +     EA  +F+QM     +  ++P  ++   +
Sbjct: 257 IYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTP--VAIGLI 314

Query: 440 ILGFLRNGQMNEAK--------------------------------DMFLQMQSLGVQPN 467
           ++G  R G ++  +                                D F Q   +G++ +
Sbjct: 315 LMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLK-D 373

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
           +I++ +LI+G   N    E+   F EM  +GI+P  TT+   L+AC+ +A+L +G + HG
Sbjct: 374 VISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHG 433

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
           Y + H   + T I  +L+DMY KCG +  AKRVFD    +++  +N M+ G+ +HGL  E
Sbjct: 434 YCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKE 493

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF-SDHQVKPSMEHFGCV 646
           AL+LF ++Q+ G++PD +T   IL+ACSH+GLV+EG +LF  M   D  V P ++H+ C+
Sbjct: 494 ALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCM 553

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
            +LL+R G LDEA   +  MP +PD  ++G+LLS C      EL   +S+ +  L  +  
Sbjct: 554 TDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSL-GETT 612

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
            + V LSN Y+A+ RW + +++R I K++GL K PG SW+ +
Sbjct: 613 ESLVLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSWVDV 654



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 145/259 (55%), Gaps = 10/259 (3%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRN--FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKN 108
           I    + + I+EA ++  +M   +    + P   G +L GC    D+  G+ +H   +K 
Sbjct: 278 IGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKA 337

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG---LNCRVGLSEK 165
           G  F  +  V+  ++ FYAK  +L  A R F  + +K+V S+ ++I    +NCR    E+
Sbjct: 338 G--FILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCR---PEE 392

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           +   F EM+  G+ PD   L  VL AC  L  +G G + HGY +  G+     + ++L+D
Sbjct: 393 SFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMD 452

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY KCG L+ A++VFD M  R++V+WN+M+ G+  +GL +EA+ +F  M   GV P  V+
Sbjct: 453 MYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVT 512

Query: 286 VTSILSASANLDALDEGKQ 304
           + +ILSA ++   +DEGKQ
Sbjct: 513 LLAILSACSHSGLVDEGKQ 531


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 220/742 (29%), Positives = 359/742 (48%), Gaps = 96/742 (12%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           ++HA    +G   +R ++   KLV  Y+       A+  F      + F W +++  +  
Sbjct: 33  RLHALASTSG-LSSRPDFA-AKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHC 90

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF---DGC 216
               + AL     M+  G  P  F  P    A   L  +  G +VH Y +K G    DG 
Sbjct: 91  ASDFDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGS 150

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V V+SSL+ MY +CG L +A K+FD M+ R+VVAW +++ G V+NG   + I    +M  
Sbjct: 151 VAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIR 210

Query: 277 ----EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
                G  P   ++ S L A   L  L  G+  H  AV  G+    ++ S++ + YSK  
Sbjct: 211 LAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCD 270

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSD--------- 366
           + EDA ++F  + E+D+V+W  LI +Y + G                 Q D         
Sbjct: 271 MTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLS 330

Query: 367 --------------------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
                                     V++A+S++ MY K E +D A  VF  +  RD   
Sbjct: 331 GLGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDES 390

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI--------LGFLRNGQM--- 449
           W+ ++A Y   G   +   L+ QMQ       +    S++        LG LR GQ    
Sbjct: 391 WSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHC 450

Query: 450 ---------NEAKDMFLQMQS--------------LGVQPNLITWTTLISGLTQNSCGNE 486
                    N   +  + M                  ++ +++TW  LIS  +     N+
Sbjct: 451 YSIKCLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSND 510

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           A+  + +ML   +KP+++T+   +SAC ++A+L +G  +H Y+    L     I T+LVD
Sbjct: 511 ALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSISTALVD 570

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MY KCG +  A+ +FD    +++  +N MISGY MHG A +AL LF  ++   I P+S+T
Sbjct: 571 MYTKCGQLGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLT 630

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           F  IL+AC HAGLV+EG +LF+ M   ++++P+++H+ C+V+LL + G L EA  ++L M
Sbjct: 631 FLAILSACCHAGLVDEGRKLFIRM-GGYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAM 689

Query: 667 PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726
           P  PD  + G+LLS C   +  E+   +++     +P N G Y+ +SN+Y ++ +W+E+ 
Sbjct: 690 PIKPDGGVWGTLLSACKVHDNFEMGLRVAKKAFSSDPRNDGYYILMSNSYGSAEKWDEIE 749

Query: 727 QVRDIMKEKGLRKNPGCSWIQI 748
           ++RD MK  G+ K  G S + +
Sbjct: 750 KLRDTMKNYGVEKGVGWSAVDV 771



 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 222/435 (51%), Gaps = 24/435 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I +  +    REAV+L  EM+    Q    +   +L G     ++  G+  HA I
Sbjct: 289 SWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVI 348

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++    F  +  +   L+  Y K + +DVA  +F  L  ++  SW+ ++   C+ GL  K
Sbjct: 349 IRRN--FGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVK 406

Query: 166 ALIGFVEMQ---EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
            L  + +MQ    D    D   L + + +C  LG +  G++VH Y +K   D    + +S
Sbjct: 407 CLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLDE-NSITNS 465

Query: 223 LIDMYGKCGDLEEARKVFD-GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           LI MYG+CG+ E A K+F    + R+VV WN++I  Y   G + +A+ ++ +M  E V+P
Sbjct: 466 LIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKP 525

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
              ++ +++SA ANL AL+ G+  H+     G+E D  + +++++ Y+K G L  A  +F
Sbjct: 526 NSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIF 585

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
             M++RD+VTWN++I+ Y   G+     A+  + ++++ E            I  + + +
Sbjct: 586 DSMLQRDVVTWNVMISGYGMHGE-----ANQALKLFSEME---------AGSIKPNSLTF 631

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
             +L+A    G   E  +LF +M    + PN+  +  ++    ++G + EA+D+ L M  
Sbjct: 632 LAILSACCHAGLVDEGRKLFIRMGGYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMP- 690

Query: 462 LGVQPNLITWTTLIS 476
             ++P+   W TL+S
Sbjct: 691 --IKPDGGVWGTLLS 703


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 194/643 (30%), Positives = 321/643 (49%), Gaps = 88/643 (13%)

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  +  +G   + FV   +LK   ++       ++H  + K+G +   FV ++LID Y  
Sbjct: 29  FSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAV 88

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG +  AR+ FD +  +++V+W  M+  Y +N   ++++++F EM + G  P   +   +
Sbjct: 89  CGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGV 148

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           L A   L+A   GK  H   +    E+D          Y  VGLL               
Sbjct: 149 LKACIGLEAFSVGKSVHGCVLKTCYEMD---------LYVGVGLL--------------- 184

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                                    D+Y K    ++  +VF  +   DV+ W+ +++ YA
Sbjct: 185 -------------------------DLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYA 219

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LG----------------F 443
              +S EA  LF QM+   + PN  ++ SV+          LG                F
Sbjct: 220 QSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVF 279

Query: 444 LRN---------GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           + N         G+++ +  +F+++ +     N +TW T+I G  Q+  G++A+  ++ M
Sbjct: 280 VSNALMDVYAKCGRLDNSMKLFMELPN----RNEVTWNTMIVGYVQSGDGDKALSLYKNM 335

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
           LE  ++ S  T +  L AC  +A++  G  IH   ++        +  +L+DMYAKCG+I
Sbjct: 336 LECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSI 395

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A+ VFD+   ++   +NAMISGY+MHGL  EAL  F+ +Q+    P+ +TF +IL+AC
Sbjct: 396 KNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSAC 455

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
           S+AGL++ G   F  M  D+ ++P MEH+ C+V LL R G+LD+A+++I  +P +P+  +
Sbjct: 456 SNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKV 515

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
             +LL  CV  N+ +L    ++ +LQ++P +   +V LSN YA + RWN V+ VR  MK 
Sbjct: 516 WRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKN 575

Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGM 777
           KG++K PG SWI+    +H F   D SHP  + I   L  L M
Sbjct: 576 KGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNM 618



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/522 (26%), Positives = 249/522 (47%), Gaps = 58/522 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I    +  Q+ E VDL + +     ++ P ++  +L+  V          +HA I
Sbjct: 8   SFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACI 67

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K G     N +V T L+  YA C +++ A + F  +  K++ SW  ++         + 
Sbjct: 68  YKLGH--ESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQD 125

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           +L  F EM+  G +P++F    VLKAC  L     G++VHG VLK  ++  ++V   L+D
Sbjct: 126 SLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLD 185

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y K GD  +  +VF+ M   +V+ W+ MI  Y Q+  + EA+ +F +M    V P + +
Sbjct: 186 LYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFT 245

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
             S+L + A+++ L  GKQ H   +  G++ +  + +++++ Y+K G L+++  +F  + 
Sbjct: 246 FASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP 305

Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
            R+ VTWN +I  YVQSG                                          
Sbjct: 306 NRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQ 365

Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                       DVVV ++++DMYAKC  I NA+ VF+ +  RD + WN +++ Y+  G 
Sbjct: 366 IHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGL 425

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWT 472
            GEA + F  MQ     PN +++ S++      G ++  ++ F  M Q  G++P +  +T
Sbjct: 426 VGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYT 485

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
            ++  L ++   ++A+   +E+    ++P+       L AC 
Sbjct: 486 CMVWLLGRSGHLDKAVKLIEEI---PLEPNVKVWRALLGACV 524



 Score =  192 bits (487), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 244/463 (52%), Gaps = 22/463 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   ++  ++  + ++++ L  EM+   F      +  +L+ C+       G+ +H  +
Sbjct: 109 SWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCV 168

Query: 106 LKNGDFFARNEYVETKLVVFYAKC-DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           LK    +  + YV   L+  Y K  DA DV  R+F  +   +V  W+ +I    +   S 
Sbjct: 169 LKTC--YEMDLYVGVGLLDLYTKFGDANDVL-RVFEEMPKHDVIPWSFMISRYAQSNQSR 225

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
           +A+  F +M+   V P+ F   +VL++C ++  +  G+ VH +VLKVG DG VFV+++L+
Sbjct: 226 EAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALM 285

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
           D+Y KCG L+ + K+F  +  RN V WN+MIVGYVQ+G  ++A+ ++  M    V+ + V
Sbjct: 286 DVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEV 345

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           + +S+L A A+L A++ G Q H++++    + D V+G+++I+ Y+K G +++A +VF  +
Sbjct: 346 TYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDML 405

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
            ERD ++WN +I+ Y   G   V  A     M  + E + N K  F SI           
Sbjct: 406 SERDEISWNAMISGYSMHGL--VGEALKAFQMMQETECVPN-KLTFVSI----------- 451

Query: 405 LAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           L+A ++ G        F  M Q  GI P +  +  ++    R+G +++A  +   ++ + 
Sbjct: 452 LSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKL---IEEIP 508

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           ++PN+  W  L+     ++  +  I+  Q++L+   +   T +
Sbjct: 509 LEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHV 551



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 137/333 (41%), Gaps = 87/333 (26%)

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           N +S+ ++I G++++ Q++E  D+F ++   G + N   +TT++  L    C   A    
Sbjct: 5   NTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAY--- 61

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
                            +L AC              Y + H+      + T+L+D YA C
Sbjct: 62  -----------------SLHACI-------------YKLGHE--SNAFVGTALIDAYAVC 89

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G+++ A++ FD    K++  +  M++ YA +    ++L LF  ++  G +P+  TF  +L
Sbjct: 90  GSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVL 149

Query: 612 NACSHAGLVNEGLELFVGMFSDHQ--VKPSME---HFGC-VVNLLSRCGNLDEALRVILT 665
            AC        GLE F    S H   +K   E   + G  +++L ++ G+ ++ LRV   
Sbjct: 150 KACI-------GLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEE 202

Query: 666 MPCD----------------------------------PDAHIIGSLLSTCVKSNETELA 691
           MP                                    P+     S+L +C      +L 
Sbjct: 203 MPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLG 262

Query: 692 EYISEHLLQLEPDNPGNYV---ALSNAYAASGR 721
           + +  H+L++  D  GN     AL + YA  GR
Sbjct: 263 KQVHCHVLKVGLD--GNVFVSNALMDVYAKCGR 293


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 182/505 (36%), Positives = 284/505 (56%), Gaps = 63/505 (12%)

Query: 322 SSIINFYSKVGLLEDAEVVFSRM----VERDIVTWNLLIA-----SYVQSGQ-------- 364
           ++II  YS+    +DA +++S M    V  D  T+  L+      S++Q G+        
Sbjct: 88  NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147

Query: 365 ----SDVVVASSIVDMYAKCERIDNAKQVFNSIIL--RDVVLWNTLLAAYADLGRSGEAS 418
               +DV V + ++ +YAKC R+ +A+ VF  + L  R +V W  +++AYA  G   EA 
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207

Query: 419 RLFYQMQLEGISPNIISWNSVILGFL---------------------------------- 444
            +F QM+   + P+ ++  SV+  F                                   
Sbjct: 208 EIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267

Query: 445 -RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            + GQ+  AK +F +M+S    PNLI W  +ISG  +N    EAI  F EM+   ++P T
Sbjct: 268 AKCGQVATAKILFDKMKS----PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 323

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            +IT A+SAC  V SL   R+++ Y+ R D      I ++L+DM+AKCG++  A+ VFD 
Sbjct: 324 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR 383

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
           +  +++ V++AMI GY +HG A EA++L++ +++ G+ P+ +TF  +L AC+H+G+V EG
Sbjct: 384 TLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
              F  M +DH++ P  +H+ CV++LL R G+LD+A  VI  MP  P   + G+LLS C 
Sbjct: 444 WWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACK 502

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
           K    EL EY ++ L  ++P N G+YV LSN YAA+  W+ V++VR  MKEKGL K+ GC
Sbjct: 503 KHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGC 562

Query: 744 SWIQIGEELHVFVACDRSHPKTEEI 768
           SW+++   L  F   D+SHP+ EEI
Sbjct: 563 SWVEVRGRLEAFRVGDKSHPRYEEI 587



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/536 (27%), Positives = 251/536 (46%), Gaps = 70/536 (13%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
            Y  L+    +K  +   +QIHAR+L  G  F+   ++ TKL+   +    +  A ++F 
Sbjct: 23  FYASLIDSATHKAQL---KQIHARLLVLGLQFS--GFLITKLIHASSSFGDITFARQVFD 77

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
            L    +F W AII    R    + AL+ +  MQ   VSPD+F  P++LKAC  L  +  
Sbjct: 78  DLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQM 137

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG--MIARNVVAWNSMIVGY 258
           GR VH  V ++GFD  VFV + LI +Y KC  L  AR VF+G  +  R +V+W +++  Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            QNG   EA+ +F +M    V+P  V++ S+L+A   L  L +G+  HA  V  G+E++ 
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
            L  S+   Y+K G +  A+++F +M   +++ WN +I+ Y ++G               
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317

Query: 364 -------------------------------------QSDVVVASSIVDMYAKCERIDNA 386
                                                + DV ++S+++DM+AKC  ++ A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
           + VF+  + RDVV+W+ ++  Y   GR+ EA  L+  M+  G+ PN +++  +++    +
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G + E    F +M    + P    +  +I  L +    ++A    + M    ++P  T  
Sbjct: 438 GMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCM---PVQPGVTVW 494

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
              LSAC     +  G      L   D         S    Y +  N++ A R++D
Sbjct: 495 GALLSACKKHRHVELGEYAAQQLFSID--------PSNTGHYVQLSNLYAAARLWD 542



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 224/471 (47%), Gaps = 23/471 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I   S+    ++A+ + + M+          +  LL+ C     +  G+ +HA++ + G 
Sbjct: 91  IRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLG- 149

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRV--KNVFSWAAIIGLNCRVGLSEKALI 168
            F  + +V+  L+  YAKC  L  A  +F  L +  + + SW AI+    + G   +AL 
Sbjct: 150 -FDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALE 208

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F +M++  V PD   L +VL A   L  +  GR++H  V+K+G +    +  SL  MY 
Sbjct: 209 IFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYA 268

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG +  A+ +FD M + N++ WN+MI GY +NG   EAI +F+EM  + V P  +S+TS
Sbjct: 269 KCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITS 328

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
            +SA A + +L++ +  +     +    D  + S++I+ ++K G +E A +VF R ++RD
Sbjct: 329 AISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRD 388

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           +V W+ +I  Y   G+     A   + +Y   ER          +   DV     L+A  
Sbjct: 389 VVVWSAMIVGYGLHGR-----AREAISLYRAMER--------GGVHPNDVTFLGLLMACN 435

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
              G   E    F +M    I+P    +  VI    R G +++A ++   ++ + VQP +
Sbjct: 436 HS-GMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEV---IKCMPVQPGV 491

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
             W  L+S   ++          Q++    I PS T     LS     A L
Sbjct: 492 TVWGALLSACKKHRHVELGEYAAQQLFS--IDPSNTGHYVQLSNLYAAARL 540


>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 656

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 311/558 (55%), Gaps = 40/558 (7%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V   S++I  Y + G L++AR+VFD M+ RNV +W S++ GY + G  +EA+R+F +M  
Sbjct: 113 VVADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPE 172

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLE 335
           + V    VS T+ +   A    +DE +      + N M   N++  ++++  Y +   ++
Sbjct: 173 KNV----VSWTTAVVGYAQNGFIDEARD-----IFNQMPEKNIIAWTAMVKSYVENDEID 223

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
           +A  +F +M +R++ +WN++I+  + +                   R++ A Q+FNS+  
Sbjct: 224 EAFELFYQMPQRNLYSWNIMISGCINAN------------------RLNEAIQLFNSMPQ 265

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
           R+ V W TL+   A  G    A + F  M     + +I +WN++I  ++  G M EA ++
Sbjct: 266 RNEVSWTTLVTGLARNGMMELARKYFDHMP----TKDIAAWNAMITAYVDQGSMAEASNL 321

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F    +L  + N+++W  LI G  +N   + ++ +   ML +  KP+ TTIT  L+AC  
Sbjct: 322 F----NLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSNFKPNETTITSVLTACDS 377

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +  L      HG +I         +   LV  Y++CG++  A+ +FD    K++  + AM
Sbjct: 378 ILELMQA---HGLVIHLGFEQDKVLANGLVTTYSRCGDVLSARFIFDQLEIKDIVSWTAM 434

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I  Y+ HG    AL +F  + + G  PD ITF  +L+ACSHAGLV +G  LF  M   + 
Sbjct: 435 ILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLFDSMSCAYG 494

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC-DPDAHIIGSLLSTCVKSNETELAEYI 694
           V+P  EH+ C+V++L R G +++A++V+  MP  + D  ++G+LL  C    +  LA +I
Sbjct: 495 VEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHECDGAVLGALLGACRLHKDVGLANHI 554

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
            E L++ EP + G+YV L+NAYAA G+WNE ++VR  MKE+ ++K PG S I++  + HV
Sbjct: 555 GEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRKEMKERNVKKEPGFSQIEVKGKSHV 614

Query: 755 FVACDRSHPKTEEIYATL 772
           F   DRSHP+ EEIY  L
Sbjct: 615 FFVRDRSHPQLEEIYLFL 632



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 154/666 (23%), Positives = 278/666 (41%), Gaps = 133/666 (19%)

Query: 2   ASFTFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIR 61
           A+F      N  FS  K   P K++      +  SD +YES  K     IS+L    +++
Sbjct: 15  ATFQSLRHLNRSFSSLKTPNPSKITTRIPFPVFASD-TYESNVK-----ISNLGLRGKVK 68

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA  +  EM  R+       Y  ++   +  +D+   + +   I +      RN   ++ 
Sbjct: 69  EARKVFDEMPRRD----AVSYASMITVYLKNKDLPQAEILFREIPE------RNVVADSA 118

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++  Y +   LD A ++F ++  +NVFSW +++    ++G  ++A+  F +M E  V   
Sbjct: 119 MISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNV--- 175

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
                           V +  AV G                    Y + G ++EAR +F+
Sbjct: 176 ----------------VSWTTAVVG--------------------YAQNGFIDEARDIFN 199

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR--VSVTSILSASANLDAL 299
            M  +N++AW +M+  YV+N   +EA  +FY+M      P R   S   ++S   N + L
Sbjct: 200 QMPEKNIIAWTAMVKSYVENDEIDEAFELFYQM------PQRNLYSWNIMISGCINANRL 253

Query: 300 DEGKQAHAVAVINGMELDN-VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           +E     A+ + N M   N V  ++++   ++ G++E A   F  M  +DI  WN +I +
Sbjct: 254 NE-----AIQLFNSMPQRNEVSWTTLVTGLARNGMMELARKYFDHMPTKDIAAWNAMITA 308

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
           YV  G                   +  A  +FN +  +++V WN L+  YA  G    + 
Sbjct: 309 YVDQGS------------------MAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSL 350

Query: 419 RLFYQMQLEGISPNIISWNSVI------------------LGF--------------LRN 446
           R    M      PN  +  SV+                  LGF               R 
Sbjct: 351 RYLILMLRSNFKPNETTITSVLTACDSILELMQAHGLVIHLGFEQDKVLANGLVTTYSRC 410

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G +  A+ +F Q++      ++++WT +I   + + CG  A+  F  ML +G KP   T 
Sbjct: 411 GDVLSARFIFDQLEI----KDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITF 466

Query: 507 TCALSACTDVASLRNGRAIHGYL-IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
              LSAC+    ++ G+ +   +   + +       + LVD+  + G +++A +V    P
Sbjct: 467 VGLLSACSHAGLVKKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMP 526

Query: 566 SKEL--PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD---SITFTNILNACSHAGLV 620
             E    V  A++    +H    + + L  ++ +K I+ +   S ++  + NA +  G  
Sbjct: 527 PHECDGAVLGALLGACRLH----KDVGLANHIGEKLIEKEPTSSGSYVLLANAYAACGKW 582

Query: 621 NEGLEL 626
           NE  E+
Sbjct: 583 NEFAEV 588



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 9/116 (7%)

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G + +A++VFD  P ++   Y +MI+ Y  +    +A  LF+ + ++ +  DS     ++
Sbjct: 65  GKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVADSA----MI 120

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
           +    AG +++  ++F     D  V+ ++  +  +V+   + GN+DEA+R+   MP
Sbjct: 121 SGYVRAGRLDKARQVF-----DQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMP 171


>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 664

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 184/569 (32%), Positives = 305/569 (53%), Gaps = 49/569 (8%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L+  Y +CG + EAR++FD M  RNVV+WN+M+ GY++NG+ E A  +F  M      
Sbjct: 109 AALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMM------ 162

Query: 281 PTR--VSVTSILSASANLDALDEGKQ------AHAVAVINGMELDNVLGSSIINFYSKVG 332
           P+R  VS  +++S       L E ++      +H  +V N          ++++ Y  + 
Sbjct: 163 PSRNDVSWLTMISGYIKKRRLREARELFDLSPSHPTSVCN----------ALLSGYVALS 212

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAK 379
            L+DAE +F RM  RD V+WN++I  Y ++G             Q D +  ++++  Y +
Sbjct: 213 CLKDAEELFGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMPQKDTISWTAVMRGYLQ 272

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              +D + +VF  I  RDVV WNT++  +    R  +A RLF +M       +++SWN++
Sbjct: 273 NGDVDASWKVFQDIPDRDVVAWNTMMGGFVQSERLDDALRLFAEMP----ERDLVSWNTI 328

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           + G ++ G M  A   F  M     + +  +W TLISG         A+    EM+  G+
Sbjct: 329 LQGHVQQGDMATANTWFRGMP----EKDETSWNTLISGHKDEG----ALALLSEMIRGGL 380

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           +P   T++  +S C  + +L  G+ +H Y ++        +++SL+ MY+KCG I +A +
Sbjct: 381 RPDEATLSVVISICASLVALGYGKMVHLYAVKTGFEHDALVMSSLISMYSKCGLIAEASQ 440

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VF +   ++   +NAMI+ YA HG+A EAL LF  + + G  PD  TF ++L+AC+H G 
Sbjct: 441 VFKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSACAHKGD 500

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           + EG   F  M  D  + P  +H+ C+V+LL R G + +A      +P D   +   +L 
Sbjct: 501 LYEGCRYFRSMQEDWNLTPRSDHYSCMVDLLGRLGFIYQAYDFTRKIPSDLQINAWETLF 560

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           S C    + +L E I++ +LQ  P + G Y  L+N YA+   W+  + VR +MKE+GL+K
Sbjct: 561 SACNAHGDVQLGEVIAKDVLQARPSDGGMYTLLANIYASKEMWSSAASVRGVMKEQGLKK 620

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEI 768
             GCSW+++  E+  F + D +HP  E I
Sbjct: 621 ETGCSWVELKGEVVSFSSNDNAHPLIEWI 649



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 122/264 (46%), Gaps = 42/264 (15%)

Query: 76  QIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFA----------RNEYVETKLVVF 125
           Q+   ++ E+ Q     +D  +   +    L+NGD  A          R+      ++  
Sbjct: 246 QVAQSLFDEMPQ-----KDTISWTAVMRGYLQNGDVDASWKVFQDIPDRDVVAWNTMMGG 300

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG------------------------ 161
           + + + LD A RLF  +  +++ SW  I+  + + G                        
Sbjct: 301 FVQSERLDDALRLFAEMPERDLVSWNTILQGHVQQGDMATANTWFRGMPEKDETSWNTLI 360

Query: 162 ---LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
                E AL    EM   G+ PD   L  V+  C +L  +G+G+ VH Y +K GF+    
Sbjct: 361 SGHKDEGALALLSEMIRGGLRPDEATLSVVISICASLVALGYGKMVHLYAVKTGFEHDAL 420

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V SSLI MY KCG + EA +VF  ++ R+ V WN+MI  Y  +G+  EA+++F +MT +G
Sbjct: 421 VMSSLISMYSKCGLIAEASQVFKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKMTKDG 480

Query: 279 VEPTRVSVTSILSASANLDALDEG 302
             P   +  S+LSA A+   L EG
Sbjct: 481 FRPDHATFLSVLSACAHKGDLYEG 504



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 170/380 (44%), Gaps = 45/380 (11%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSP 180
           L+  Y     L  A  LF R++ ++  SW  +I    R G  + A   F EM Q+D +S 
Sbjct: 204 LLSGYVALSCLKDAEELFGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMPQKDTISW 263

Query: 181 DNFVLPNVLKACGALGW-----------VGFGRAVHGYVLKVGFDGCVFVAS-------- 221
              +   +        W           V +   + G+V     D  + + +        
Sbjct: 264 TAVMRGYLQNGDVDASWKVFQDIPDRDVVAWNTMMGGFVQSERLDDALRLFAEMPERDLV 323

Query: 222 ---SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
              +++  + + GD+  A   F GM  ++  +WN++I G+   G    A+ +  EM   G
Sbjct: 324 SWNTILQGHVQQGDMATANTWFRGMPEKDETSWNTLISGHKDEG----ALALLSEMIRGG 379

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           + P   +++ ++S  A+L AL  GK  H  AV  G E D ++ SS+I+ YSK GL+ +A 
Sbjct: 380 LRPDEATLSVVISICASLVALGYGKMVHLYAVKTGFEHDALVMSSLISMYSKCGLIAEAS 439

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
            VF  +V+RD VTWN +IA+Y   G     +AS  + ++ K       K  F      D 
Sbjct: 440 QVFKLLVQRDTVTWNAMIATYAYHG-----MASEALKLFNKM-----TKDGFRP----DH 485

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFL 457
             + ++L+A A  G   E  R F  MQ +  ++P    ++ ++    R G + +A D   
Sbjct: 486 ATFLSVLSACAHKGDLYEGCRYFRSMQEDWNLTPRSDHYSCMVDLLGRLGFIYQAYDFTR 545

Query: 458 QMQSLGVQPNLITWTTLISG 477
           ++ S  +Q N   W TL S 
Sbjct: 546 KIPS-DLQIN--AWETLFSA 562



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 117/274 (42%), Gaps = 55/274 (20%)

Query: 390 FNSIILRDVVLWN-------------------------------TLLAAYADLGRSGEAS 418
           F+ +  R+V  WN                                LL  YA  GR  EA 
Sbjct: 66  FDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMPVRNPVSWAALLTGYARCGRVAEAR 125

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
            LF +M       N++SWN+++ G+LRNG +  A+++F  M S     N ++W T+ISG 
Sbjct: 126 ELFDRMP----DRNVVSWNAMMSGYLRNGMVERARELFDMMPS----RNDVSWLTMISGY 177

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITC--ALSACTDVASLRNGRAIHGYLIRHDLCL 536
            +     EA   F       + PS  T  C   LS    ++ L++   + G + R D   
Sbjct: 178 IKKRRLREARELFD------LSPSHPTSVCNALLSGYVALSCLKDAEELFGRMQRRDPVS 231

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              ++T     YA+ G +  A+ +FD  P K+   + A++ GY  +G    +  +F+++ 
Sbjct: 232 WNVMITG----YARAGRMQVAQSLFDEMPQKDTISWTAVMRGYLQNGDVDASWKVFQDIP 287

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
               D D + +  ++     +  +++ L LF  M
Sbjct: 288 ----DRDVVAWNTMMGGFVQSERLDDALRLFAEM 317


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 197/695 (28%), Positives = 327/695 (47%), Gaps = 132/695 (18%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R VH      G    + VA+ LI  Y     L++A  +FDGM  R+ V+W+ M+ G+ + 
Sbjct: 98  RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 157

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G        F E+   G  P   ++  ++ A  +L  L                      
Sbjct: 158 GDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQ--------------------- 196

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------ 363
            ++++ Y K   +EDA  +F +M ERD+VTW ++I  Y + G                  
Sbjct: 197 MALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV 256

Query: 364 ----------------------------------QSDVVVASSIVDMYAKCERIDNAKQV 389
                                             Q DV++ ++++DMYAKC  +++A+++
Sbjct: 257 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 316

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F+ +  ++V+ W+ ++AAY   G+  +A  LF  M   G+ P+ I+  S++   +    +
Sbjct: 317 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNL 376

Query: 450 NEAKDMFLQMQSLGVQPNLI-------------------------------TWTTLISGL 478
            + + +  Q    G+  NLI                               +W+ ++ G 
Sbjct: 377 TQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGF 436

Query: 479 --------------------------TQNSCGN--EAILFFQEMLETGIKPSTTTITCAL 510
                                     T   CGN  E+++ F +M E G+ P    +   +
Sbjct: 437 AKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVV 496

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
            AC  + ++   R I  Y+ R    L   + T+++DM+AKCG +  A+ +FD    K + 
Sbjct: 497 FACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVI 556

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
            ++AMI+ Y  HG   +AL LF  + + GI P+ IT  ++L ACSHAGLV EGL  F  M
Sbjct: 557 SWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLM 616

Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETEL 690
           + D+ V+  ++H+ CVV+LL R G LDEAL++I +M  + D  + G+ L  C    +  L
Sbjct: 617 WEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVL 676

Query: 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGE 750
           AE  +  LL+L+P NPG+Y+ LSN YA +GRW +V++ RD+M ++ L+K PG +WI++  
Sbjct: 677 AEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDN 736

Query: 751 ELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           + H F   D +HP+++EIY  L  LG  + LV  V
Sbjct: 737 KSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYV 771


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 201/658 (30%), Positives = 326/658 (49%), Gaps = 91/658 (13%)

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRV-GLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC 192
            A R+F  +R +NVF+W      NC V GL+   L+       D +   N          
Sbjct: 54  AARRVFDEMRERNVFTW------NCMVSGLARNGLLADARGVFDAMPSRN---------- 97

Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
            ++ W                       ++L+  Y + G + EAR +FD M  RNVV+WN
Sbjct: 98  -SVSW-----------------------AALLTGYARRGRVAEARDLFDRMPHRNVVSWN 133

Query: 253 SMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL---------DALDEGK 303
           +M+ GY++NG+ + A  +F  M      P R  V+ ++  S  +         +  D   
Sbjct: 134 AMVSGYLRNGMVDRARELFDAM------PARDDVSWLMMVSGYMRRKRFREAREIFDRAP 187

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
                +V N          ++++ Y+  G L+DAE +F RM   D V+WN +I  Y ++G
Sbjct: 188 SPPPTSVCN----------ALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAG 237

Query: 364 Q-------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
                          D V  ++IV  Y +   +D A +VF  +  RDV+ WNT++  +  
Sbjct: 238 MMQVARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQDMPDRDVLAWNTMMGGFVV 297

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
             R  +A RLF  M       +++SWN+++ G+++ G M+ A   F  M    ++ +  +
Sbjct: 298 SDRLDDALRLFADMP----DRDLVSWNTILQGYIQQGDMDSATTWFRSM----LEKDETS 349

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W T+ISG         A+    EM   G +P   T +  +S C  +A+L  GR +H   I
Sbjct: 350 WNTVISGYKDEG----ALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHICTI 405

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           +        +++SL+ MY+KCG I +A +VFD+   ++   +NAMI+ YA HGLA EALA
Sbjct: 406 KTGFEHDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALA 465

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF  + +    PD  TF ++L+AC+H G + EG   F  M  D  + P  +H+ C+V+LL
Sbjct: 466 LFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDHYSCMVDLL 525

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
            R G + +A      +P +   +   +L S+C    + +L E +++++LQ  P + G Y 
Sbjct: 526 GRSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHGDIQLGELVAKNVLQSRPSDGGMYT 585

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
            LSN YAA G W+  + VR +MKE+GL+K  GCSWI++  ++  F + D +HP  E+I
Sbjct: 586 LLSNIYAAKGMWSSAATVRGLMKEQGLKKETGCSWIELKGDVVSFSSNDNAHPLIEQI 643



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 196/438 (44%), Gaps = 53/438 (12%)

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
           A +V  WNS I+ + + G    A RVF EM    V      V+ +            G  
Sbjct: 33  AGDVGRWNSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLAR---------NGLL 83

Query: 305 AHAVAVINGMELDN-VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
           A A  V + M   N V  ++++  Y++ G + +A  +F RM  R++V+WN +++ Y+++G
Sbjct: 84  ADARGVFDAMPSRNSVSWAALLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNG 143

Query: 364 Q-------------SDVVVASSIVDMYAKCERIDNAKQVFN-SIILRDVVLWNTLLAAYA 409
                          D V    +V  Y + +R   A+++F+ +       + N LL+ YA
Sbjct: 144 MVDRARELFDAMPARDDVSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYA 203

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
             G   +A  LF +MQ     P+ +SWN++I G+ R G M  A+ +F +M       + +
Sbjct: 204 GYGYLKDAEELFGRMQ----RPDRVSWNAMITGYTRAGMMQVARRLFDEMPG----KDTV 255

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           +WT ++ G  QN   + A   FQ+M +  +    T +         V S R   A+  + 
Sbjct: 256 SWTAIVRGYLQNGDVDAAWEVFQDMPDRDVLAWNTMMGGF------VVSDRLDDALRLFA 309

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
              D  L +    +++  Y + G++  A   F     K+   +N +ISGY   G    AL
Sbjct: 310 DMPDRDLVS--WNTILQGYIQQGDMDSATTWFRSMLEKDETSWNTVISGYKDEG----AL 363

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH----FGC 645
           +L   + + G  PD  T++ +++ C+    +  G  + +       +K   EH       
Sbjct: 364 SLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHIC-----TIKTGFEHDALVMSS 418

Query: 646 VVNLLSRCGNLDEALRVI 663
           ++++ S+CG + EA +V 
Sbjct: 419 LISMYSKCGLITEASQVF 436



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 125/521 (23%), Positives = 208/521 (39%), Gaps = 104/521 (19%)

Query: 113 ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
           +RN      L+  YA+   +  A  LF R+  +NV SW A++    R G+ ++A   F  
Sbjct: 95  SRNSVSWAALLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELF-- 152

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC--VF----------VA 220
                         + + A   + W+     V GY+ +  F     +F          V 
Sbjct: 153 --------------DAMPARDDVSWLMM---VSGYMRRKRFREAREIFDRAPSPPPTSVC 195

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L+  Y   G L++A ++F  M   + V+WN+MI GY + G+ + A R+F EM  +   
Sbjct: 196 NALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDT- 254

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEV 339
              VS T+I+        L  G    A  V   M   +VL  ++++  +     L+DA  
Sbjct: 255 ---VSWTAIVRGY-----LQNGDVDAAWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALR 306

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
           +F+ M +RD+V+WN ++  Y+Q G                   +D+A   F S++ +D  
Sbjct: 307 LFADMPDRDLVSWNTILQGYIQQGD------------------MDSATTWFRSMLEKDET 348

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI------------------- 440
            WNT+++ Y D G    A  L  +M   G  P+  +W+ VI                   
Sbjct: 349 SWNTVISGYKDEG----ALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHICT 404

Query: 441 --LGFLRN--------------GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
              GF  +              G + EA  +F     L VQ + +TW  +I+    +   
Sbjct: 405 IKTGFEHDALVMSSLISMYSKCGLITEASQVF----DLIVQRDTVTWNAMIATYAYHGLA 460

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG-RAIHGYLIRHDLCLPTPIVTS 543
            EA+  F  M +    P   T    LSAC     L  G           +L   +   + 
Sbjct: 461 AEALALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDHYSC 520

Query: 544 LVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMHG 583
           +VD+  + G +HQA       PS  ++  +  + S    HG
Sbjct: 521 MVDLLGRSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHG 561



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 151/337 (44%), Gaps = 29/337 (8%)

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           DV   +S +  + +  R+  A++VF+ +  R+V  WN +++  A  G   +A  +F  M 
Sbjct: 35  DVGRWNSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVFDAMP 94

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
               S N +SW +++ G+ R G++ EA+D+F +M       N+++W  ++SG  +N   +
Sbjct: 95  ----SRNSVSWAALLTGYARRGRVAEARDLFDRMP----HRNVVSWNAMVSGYLRNGMVD 146

Query: 486 EAILFFQEMLETGIKPSTTTITCAL--SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
            A   F  M      P+   ++  +  S        R  R I     R     PT +  +
Sbjct: 147 RARELFDAM------PARDDVSWLMMVSGYMRRKRFREAREI---FDRAPSPPPTSVCNA 197

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+  YA  G +  A+ +F      +   +NAMI+GY   G+   A  LF  +  K    D
Sbjct: 198 LLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGK----D 253

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
           ++++T I+      G V+   E+F  M     +  +    G VV+       LD+ALR+ 
Sbjct: 254 TVSWTAIVRGYLQNGDVDAAWEVFQDMPDRDVLAWNTMMGGFVVS-----DRLDDALRLF 308

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
             MP D D     ++L   ++  + + A      +L+
Sbjct: 309 ADMP-DRDLVSWNTILQGYIQQGDMDSATTWFRSMLE 344



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 2/136 (1%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           A+ LL+EM    ++     +  ++  C     +  G+ +H   +K G  F  +  V + L
Sbjct: 362 ALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHICTIKTG--FEHDALVMSSL 419

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  Y+KC  +  AS++F  +  ++  +W A+I      GL+ +AL  F  M +D  SPD+
Sbjct: 420 ISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALALFDRMTKDRFSPDH 479

Query: 183 FVLPNVLKACGALGWV 198
               +VL AC   G++
Sbjct: 480 ATFLSVLSACAHKGYL 495



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 19/199 (9%)

Query: 529 LIRHDLCLPTPIVTSLV-----DMYA--KCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           L+ H +C   P     V     D+ A  + G +  A+RVFD    + +  +N M+SG A 
Sbjct: 20  LLLHRICTRAPRHAGDVGRWNSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLAR 79

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           +GL  +A  +F  +  +    +S+++  +L   +  G V E  +LF     D     ++ 
Sbjct: 80  NGLLADARGVFDAMPSR----NSVSWAALLTGYARRGRVAEARDLF-----DRMPHRNVV 130

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
            +  +V+   R G +D A  +   MP   D   +  ++S  ++      A  I +     
Sbjct: 131 SWNAMVSGYLRNGMVDRARELFDAMPARDDVSWL-MMVSGYMRRKRFREAREIFDRAPSP 189

Query: 702 EPDNPGNYVALSNAYAASG 720
            P +  N  AL + YA  G
Sbjct: 190 PPTSVCN--ALLSGYAGYG 206


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 197/611 (32%), Positives = 320/611 (52%), Gaps = 62/611 (10%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           F  +SL+ +Y K G L +A  VF  M  R+ V+W  MIVG  ++G   +A++ F +M  E
Sbjct: 282 FTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSE 341

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G  P++ ++T++LS+ A ++A   G++ H   V  G+     + +S++  Y K G  E A
Sbjct: 342 GFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETA 401

Query: 338 EVVFSRM-------------------------------VERDIVTWNLLIASYVQSG--- 363
             VF RM                               VER IV+WN +IA Y Q+G   
Sbjct: 402 RAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDG 461

Query: 364 ---------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV-----LWNT 403
                          + D    +S++   A    +   KQ+ +S ILR  +     + N 
Sbjct: 462 MALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQM-HSYILRTGMPCSSQIMNA 520

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           L++ YA  G    A R+  Q  +  +  N+IS+ +++ G+++ G   +A+++F  M +  
Sbjct: 521 LISTYAKSGSVETARRIMDQAVVADL--NVISFTALLEGYVKLGDTKQAREIFDIMNNR- 577

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
              ++I WT +I G  QN   +EA+  F+ M+  G +P++ T+   LSAC  +A L  G+
Sbjct: 578 ---DVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGK 634

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMH 582
            IH   IR        +  +++ +YA+ G++  A+RVFD I   KE   + +MI   A H
Sbjct: 635 QIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQH 694

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           GL  +A+ LF+ + + G+ PD IT+  +L+AC+HAG V++G   +  M ++H + P M H
Sbjct: 695 GLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSH 754

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           + C+V+L +R G L EA   I  MP  PD  + GSLL+ C      +LAE  +  LL ++
Sbjct: 755 YACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSID 814

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           P N G Y AL+N Y+A GRWN+ +++  + K+KG++K  G SW  +  ++HVF A D  H
Sbjct: 815 PHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLH 874

Query: 763 PKTEEIYATLA 773
           P+ + IY   A
Sbjct: 875 PQRDSIYRKAA 885



 Score =  229 bits (584), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 186/685 (27%), Positives = 297/685 (43%), Gaps = 160/685 (23%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNG-------------------------------- 109
           Y  LLQ C    +   G+ IHA  +K G                                
Sbjct: 212 YARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLF 271

Query: 110 ---DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWA-AIIGLNCRVGLSEK 165
               +  RN +    L+  YAK   L  A  +F  +  ++  SW   I+GLN R G    
Sbjct: 272 DDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLN-RSGRFWD 330

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  F++M  +G +P  F L NVL +C A+   G GR VH +V+K+G   CV VA+S++ 
Sbjct: 331 AVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLY 390

Query: 226 MYGKCGDLEEARKV-------------------------------FDGMIARNVVAWNSM 254
           MYGKCGD E AR V                               F+ M+ R++V+WN++
Sbjct: 391 MYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTI 450

Query: 255 IVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           I GY QNGL+  A++ F  M +   +EP   +VTS+LSA ANL  L  GKQ H+  +  G
Sbjct: 451 IAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTG 510

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373
           M   + + +++I+ Y+K G +E A  +  + V  D+                +V+  +++
Sbjct: 511 MPCSSQIMNALISTYAKSGSVETARRIMDQAVVADL----------------NVISFTAL 554

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           ++ Y K      A+++F+ +  RDV+ W  ++  Y   G++ EA  LF  M L G  PN 
Sbjct: 555 LEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNS 614

Query: 434 ISWNSVI-----LGFLRNGQMNEAKDM-FLQMQSLGV----------------------- 464
            +  +V+     L +L  G+    K +  LQ QS+ V                       
Sbjct: 615 HTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQ 674

Query: 465 ---QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
              +   ITWT++I  + Q+  G +A++ F+EM+  G+KP   T    LSAC     +  
Sbjct: 675 ICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDK 734

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G+                        Y +  N H       I P  ++  Y  M+  +A 
Sbjct: 735 GK----------------------RYYEQMQNEH------GIVP--QMSHYACMVDLHAR 764

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNAC---SHAGLVNEGLELFVGMFSDHQVKP 638
            GL  EA    + +Q+  + PD++ + ++L AC    +A L     EL  G      + P
Sbjct: 765 AGLLTEA---HEFIQRMPVAPDTVVWGSLLAACRVRKNADLA----ELAAGKLL--SIDP 815

Query: 639 -SMEHFGCVVNLLSRCGNLDEALRV 662
            +   +  + N+ S CG  ++A R+
Sbjct: 816 HNSGAYSALANVYSACGRWNDAARI 840


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 219/700 (31%), Positives = 352/700 (50%), Gaps = 100/700 (14%)

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
           C +  K+ F W ++I  N      + AL  F  MQ   V  +NF  P +LKAC AL  + 
Sbjct: 11  CSISHKDTFHWNSLIAKNATQN-PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLL 69

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI--ARNVVAWNSMIVG 257
               VH Y+ ++G     F A++L+D YGKCG    A +VFD M   + +VV+W ++I  
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 258 YVQNGLNEEAIRVFYEMT-LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           Y  NG  +EA + F  M  + G + +      ++S  A + A   G              
Sbjct: 130 YSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVG-------------- 175

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
               GS+ +   S V  L              +V +   +++++          +S+V M
Sbjct: 176 ---CGSNCLRRGSAVHGL--------------VVKYGFGVSTHL---------GNSMVHM 209

Query: 377 YAKCERIDNAKQVFNSIIL--RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS---P 431
           Y+ C+ +  A +VFN I +  RDVV WN+L++ +   G +  A R F  M  EG S   P
Sbjct: 210 YSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEP 269

Query: 432 NII------------------SW----------------NSVILGFL-----RNGQMNEA 452
           N +                  SW                + V+L  L     R G +  A
Sbjct: 270 NRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALA 329

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG------IKPSTTTI 506
           +++F  ++      N++ W+ +I+G  Q SC  EA+  F++ML  G      +KP+  T+
Sbjct: 330 REIFDGVEG----KNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTL 385

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD--IS 564
              ++AC+ + + R+   IH Y +   L     I ++L+DM AKCG+I   ++VF     
Sbjct: 386 VSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDE 445

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
            ++ +  +++MI    +HG    AL LF  ++  G +P+ IT+ ++L+ACSHAGLV +G 
Sbjct: 446 STRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGK 505

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
             F  M  D+ + P+ +H+ C+V+LL R G+LDEA  VIL MP   D  + GSLL+ C  
Sbjct: 506 SCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHL 565

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
               +L E + + +L L+ ++ G++V L+N Y  +GRW++V ++R  ++  GLRK PG S
Sbjct: 566 HGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQS 625

Query: 745 WIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSK 784
           +I+IG E++ F+A DRSHP++E IY  L  L   VR  +K
Sbjct: 626 FIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAK 665



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 164/350 (46%), Gaps = 28/350 (8%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGD--FFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
           LL+ C     + T   +H  I         A++  V T L+  +A+C  L +A  +F  +
Sbjct: 277 LLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGV 336

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG------VSPDNFVLPNVLKACGALG 196
             KNV  W+A+I    +    E+AL  F +M  +G      V P+   L +V+ AC  LG
Sbjct: 337 EGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLG 396

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM--IARNVVAWNSM 254
                  +H Y +  G D    +AS+LIDM  KCGD+E  R+VF  M    R VV+W+SM
Sbjct: 397 ASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSM 456

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           I     +G  + A+ +F EM   G EP  ++  S+LSA ++   +++GK     +  N M
Sbjct: 457 IGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGK-----SCFNSM 511

Query: 315 ELDNVLGSS------IINFYSKVGLLEDAE-VVFSRMVERDIVTWNLLIASYVQSGQSDV 367
           E D  +  +      +++   + G L++A  V+ +  ++ D+  W  L+A+    G   +
Sbjct: 512 EKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKL 571

Query: 368 --VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
             +V   I+ + +          V  + +  D   W+ ++    +L RSG
Sbjct: 572 GEIVEKKILSLDSN----SVGHHVLLANMYEDAGRWDDVVRMRVELRRSG 617


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 185/630 (29%), Positives = 335/630 (53%), Gaps = 57/630 (9%)

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           P+ F+L N++ +   LG + +   V   +        ++  ++++  Y K G + E   +
Sbjct: 42  PETFLLNNLISSYAKLGSIPYACKVFDQMPHPN----LYSWNTILSAYSKLGRVSEMEYL 97

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE---GVEPTRVSVTSILSASANL 296
           FD M  R+ V+WNS+I GY   GL  ++++  Y + L+        R++ +++L  ++  
Sbjct: 98  FDAMPRRDGVSWNSLISGYAGCGLIYQSVKA-YNLMLKNDGSFNLNRITFSTLLILASKR 156

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
             +  G+Q H   V  G      +GS +++ YSK+G++  A  VF  + E+++V +N LI
Sbjct: 157 GCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLI 216

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
              +                  +C R++++K++F  +  RD + W +++  +   G   +
Sbjct: 217 MGLM------------------RCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRD 258

Query: 417 ASRLFYQMQLEGISPNIISWNSVILG-----FLRNGQMNEAK-----------------D 454
           A  +F +M+LE +  +  ++ SV+        L+ G+   A                  D
Sbjct: 259 AIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVD 318

Query: 455 MFLQMQSLGVQ---------PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
           M+ + +++             N+++WT ++ G  QN    EA+  F +M + GI+P   T
Sbjct: 319 MYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFT 378

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           +   +S+C ++ASL  G   H   +   L     +  +LV +Y KCG+I  + R+F+   
Sbjct: 379 LGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEIS 438

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            K+   + A++SGYA  G A E + LF+++   G+ PD +TF  +L+ACS AGLV +G +
Sbjct: 439 FKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQ 498

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
           +F  M ++H + P  +H+ C+++L SR G ++EA   I  MP  PDA    +LLS+C   
Sbjct: 499 IFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFY 558

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
              ++ ++ +E L++L+P N  +YV LS+ YAA G+W EV+++R  M++KGLRK PGCSW
Sbjct: 559 GNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSW 618

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLALL 775
           I+   ++HVF A D+S+P +++IY+ L  L
Sbjct: 619 IKYKNQVHVFSADDKSNPFSDQIYSELEKL 648



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 217/426 (50%), Gaps = 64/426 (15%)

Query: 87  QGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK------------------ 128
           +GCV       G+QIH  ++K G  F    +V + LV  Y+K                  
Sbjct: 156 RGCVK-----LGRQIHGHVVKFG--FMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKN 208

Query: 129 -------------CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
                        C  ++ + RLF  +R ++  SW ++I    + GL   A+  F EM+ 
Sbjct: 209 VVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKL 268

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
           + +  D +   +VL ACG +  +  G+ VH Y+++  +   +FVAS+L+DMY KC +++ 
Sbjct: 269 ENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKS 328

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A  VF  M  +NVV+W +M+VGY QNG +EEA++ F +M   G+EP   ++ S++S+ AN
Sbjct: 329 AEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCAN 388

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L +L+EG Q HA A+ +G+     + ++++  Y K G +ED+  +F+ +  +D VTW  L
Sbjct: 389 LASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTAL 448

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADL 411
           ++ Y Q G+++  +                   +F S++      D V +  +L+A +  
Sbjct: 449 VSGYAQFGKANETIG------------------LFESMLAHGLKPDKVTFIGVLSACSRA 490

Query: 412 GRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
           G   + +++F  M  E GI P    +  +I  F R G++ EA++   +M      P+ I+
Sbjct: 491 GLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMP---FSPDAIS 547

Query: 471 WTTLIS 476
           W TL+S
Sbjct: 548 WATLLS 553



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 147/598 (24%), Positives = 253/598 (42%), Gaps = 127/598 (21%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  LL+ C    +    + +H+ I+K   +     ++   L+  YAK  ++  A ++F +
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPY--PETFLLNNLISSYAKLGSIPYACKVFDQ 69

Query: 142 LRVKNVFSWAAIIGLNCRVG-LSEKALIGFVEMQEDGVSPD------------------- 181
           +   N++SW  I+    ++G +SE   +     + DGVS +                   
Sbjct: 70  MPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAY 129

Query: 182 NFVLPN-------------VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
           N +L N             +L      G V  GR +HG+V+K GF   VFV S L+DMY 
Sbjct: 130 NLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYS 189

Query: 229 KCGDLEEARKVFDGMIARNVV-------------------------------AWNSMIVG 257
           K G +  ARKVFD +  +NVV                               +W SMI G
Sbjct: 190 KMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITG 249

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           + QNGL+ +AI +F EM LE ++  + +  S+L+A   + AL EGKQ HA  +    + +
Sbjct: 250 FTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDN 309

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD----------- 366
             + S++++ Y K   ++ AE VF +M  +++V+W  ++  Y Q+G S+           
Sbjct: 310 IFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQK 369

Query: 367 -----------------------------------------VVVASSIVDMYAKCERIDN 385
                                                    + V++++V +Y KC  I++
Sbjct: 370 YGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIED 429

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           + ++FN I  +D V W  L++ YA  G++ E   LF  M   G+ P+ +++  V+    R
Sbjct: 430 SHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSR 489

Query: 446 NGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
            G + +   +F  M    G+ P    +T +I   ++     EA  F  +M      P   
Sbjct: 490 AGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKM---PFSPDAI 546

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLP--TPIVTSLVDMYAKCGNIHQAKRV 560
           +    LS+C    ++  G+    +L+  D   P  T     L  +YA  G   +  R+
Sbjct: 547 SWATLLSSCRFYGNMDIGKWAAEFLMELD---PHNTASYVLLSSVYAAKGKWEEVARL 601



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 182/345 (52%), Gaps = 12/345 (3%)

Query: 26  SQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGEL 85
           S+    ++RE D+       S+   I+  ++    R+A+D+  EMK  N Q+    +G +
Sbjct: 228 SKRLFFEMRERDSI------SWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSV 281

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L  C     +  G+Q+HA I++    +  N +V + LV  Y KC  +  A  +F ++  K
Sbjct: 282 LTACGGVMALQEGKQVHAYIIRTD--YKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCK 339

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           NV SW A++    + G SE+A+  F +MQ+ G+ PD+F L +V+ +C  L  +  G   H
Sbjct: 340 NVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFH 399

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
              L  G    + V+++L+ +YGKCG +E++ ++F+ +  ++ V W +++ GY Q G   
Sbjct: 400 ARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKAN 459

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG--SS 323
           E I +F  M   G++P +V+   +LSA +    +++G Q    ++IN   +  +    + 
Sbjct: 460 ETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFE-SMINEHGIVPIQDHYTC 518

Query: 324 IINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDV 367
           +I+ +S+ G +E+A    ++M    D ++W  L++S    G  D+
Sbjct: 519 MIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDI 563



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 11/124 (8%)

Query: 508 CAL-SACTDVASLRNGRAIHGYLIRHDLCLPTP---IVTSLVDMYAKCGNIHQAKRVFDI 563
           CAL   C +  +    + +H ++I+    LP P   ++ +L+  YAK G+I  A +VFD 
Sbjct: 13  CALLKLCCETHNFTKAKNLHSHIIK---TLPYPETFLLNNLISSYAKLGSIPYACKVFDQ 69

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
            P   L  +N ++S Y+  G   E   LF  + ++    D +++ ++++  +  GL+ + 
Sbjct: 70  MPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRR----DGVSWNSLISGYAGCGLIYQS 125

Query: 624 LELF 627
           ++ +
Sbjct: 126 VKAY 129


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 193/609 (31%), Positives = 323/609 (53%), Gaps = 39/609 (6%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-GMIARNVVAWNSMIVGYVQNG 262
           +H  ++ +G    V  ++ LI  Y    D   +  VF     + NV  WNS+I     NG
Sbjct: 35  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNG 94

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
           L  EA+ ++ E     ++P   +  S+++A A L   +  K  H   +  G   D  +G+
Sbjct: 95  LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGN 154

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------- 363
           ++I+ Y +   L+ A  VF  M  RD+V+WN LI+ Y  +G                   
Sbjct: 155 ALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEM 214

Query: 364 ----QSDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSG 415
               + D++  +SI+        ++  K V + +I      D    N L+  YA  G   
Sbjct: 215 VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLL 274

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            +  +F  M+ +    + +SWNS+I  +++NG+M ++  +F  M++     ++ITW T+I
Sbjct: 275 ASQEVFSGMKCK----DSVSWNSMINVYIQNGKMGDSLKVFENMKA----RDIITWNTII 326

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           +    +   N  +     M   G+ P   T+   L  C+ +A+ R G+ IHG + +  L 
Sbjct: 327 ASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE 386

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
              P+   L++MY+KCG++  + +VF +  +K++  + A+IS   M+G   +A+  F  +
Sbjct: 387 SDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEM 446

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           +  GI PD + F  I+ ACSH+GLV EGL  F  M  D++++P +EH+ CVV+LLSR   
Sbjct: 447 EAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSAL 506

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           LD+A   IL+MP  PD+ I G+LLS C  S +TE+AE +SE +++L PD+ G YV +SN 
Sbjct: 507 LDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNI 566

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           YAA G+W++V  +R  +K +GL+K+PGCSW++I  +++VF    +   + EE+     LL
Sbjct: 567 YAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVN---KLL 623

Query: 776 GMHVRLVSK 784
           GM   L++K
Sbjct: 624 GMLAGLMAK 632



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 232/478 (48%), Gaps = 59/478 (12%)

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           NV+ W +II      GL  +AL  + E Q   + PD +  P+V+ AC  L      +++H
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
             VL +GF   +++ ++LIDMY +  DL++ARKVF+ M  R+VV+WNS+I GY  NG   
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198

Query: 266 EAIRVFYE---MTLEGV---EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           EA+ ++Y+   + +E V   +P  +++TSIL A  +L  L+ GK  H   + +G E D  
Sbjct: 199 EALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 258

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
             + +IN Y+K G L  ++ VFS M  +D V+WN +I  Y+Q+G                
Sbjct: 259 ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNG---------------- 302

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
             ++ ++ +VF ++  RD++ WNT++A+           R+  +M+ EG++P++ +  S+
Sbjct: 303 --KMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSI 360

Query: 440 -----ILGFLRNGQM-----------------NEAKDMF---------LQMQSLGVQPNL 468
                +L   R G+                  N   +M+          Q+  L    ++
Sbjct: 361 LPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDV 420

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           +TWT LIS       G +A+  F EM   GI P        + AC+    +  G   + +
Sbjct: 421 VTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLN-YFH 479

Query: 529 LIRHDLCLPTPI--VTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMHG 583
            ++ D  +   I     +VD+ ++   + +A+      P K +  ++ A++S   M G
Sbjct: 480 RMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSG 537



 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 138/521 (26%), Positives = 237/521 (45%), Gaps = 64/521 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I +L+      EA+ L +E +    Q     +  ++  C    D    + IH R+L  G 
Sbjct: 87  IRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMG- 145

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII-GLNCRVGLSE----- 164
            F  + Y+   L+  Y + + LD A ++F  + +++V SW ++I G N     +E     
Sbjct: 146 -FGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIY 204

Query: 165 -KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
            +++  F+EM  +   PD   + ++L+ACG LG + FG+ VH Y++  G++     ++ L
Sbjct: 205 YQSIKLFMEMV-NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNIL 263

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF------------ 271
           I+MY KCG+L  +++VF GM  ++ V+WNSMI  Y+QNG   ++++VF            
Sbjct: 264 INMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWN 323

Query: 272 -------------------YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN 312
                                M  EGV P   ++ SIL   + L A  +GK+ H      
Sbjct: 324 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 383

Query: 313 GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASS 372
           G+E D  +G+ +I  YSK G L ++  VF  M  +D+VTW  LI++    G+    V  +
Sbjct: 384 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAV-RA 442

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISP 431
             +M A             + I+ D V +  ++ A +  G   E    F++M+ +  I P
Sbjct: 443 FGEMEA-------------AGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEP 489

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
            I  +  V+    R+  +++A+D  L M    ++P+   W  L+S    +     A    
Sbjct: 490 RIEHYACVVDLLSRSALLDKAEDFILSMP---LKPDSSIWGALLSACRMSGDTEIAERVS 546

Query: 492 QEMLE-----TGIKPSTTTITCALSACTDVASLRNGRAIHG 527
           + ++E     TG     + I  AL     V S+R      G
Sbjct: 547 ERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARG 587


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 198/599 (33%), Positives = 324/599 (54%), Gaps = 39/599 (6%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCG-----DLEEARKVFDGMIARNVVAWNSMIV 256
           + +H ++L+ G     F   S   ++  C       L+ A KVFD +   N+  WN++I 
Sbjct: 47  KQLHAHMLRTGL---FFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIR 103

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVE-PTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            +  +    + + VF +M  E    P   +   ++ A+  + +L  G+  H + +     
Sbjct: 104 AFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFG 163

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA----- 370
            D  + +S+I+FYS +G L+ A +VFS++VE+DIV+WN +I+ +VQ G  +  +      
Sbjct: 164 SDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRM 223

Query: 371 ---------SSIVDMYAKC-ERID------NAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
                     ++V + + C +RID          +  + I  +++L N +L  Y   G  
Sbjct: 224 KMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSL 283

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
            +A RLF +M+      +I+SW ++I G+ + G  + A+ +F  M     + ++  W  L
Sbjct: 284 EDARRLFDKME----EKDIVSWTTMIDGYAKVGDYDAARRVFDVMP----REDITAWNAL 335

Query: 475 ISGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           IS   QN    EA+  F+E+ L    KP+  T+   L+AC  + ++  G  IH Y+ +  
Sbjct: 336 ISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQG 395

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
           + L   I TSL+DMY+KCG++ +A  VF     +++ V++AMI+G AMHG    A+ LF 
Sbjct: 396 IKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFS 455

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            +Q+  + P+++TFTN+L ACSH+GLV+EG   F  M   + V P  +H+ C+V++L R 
Sbjct: 456 KMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRA 515

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G L+EA+ +I  MP  P A + G+LL  C      ELAE     LL+ + +N G YV LS
Sbjct: 516 GCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLS 575

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           N YA +G+W+ VS++R  MK  GL K PGCS I++   +H F+  D SHP + EIY+ L
Sbjct: 576 NIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKL 634



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 145/542 (26%), Positives = 264/542 (48%), Gaps = 60/542 (11%)

Query: 79  PEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRL 138
           P     L+  C  K+ +   +Q+HA +L+ G FF      +       +   +LD A ++
Sbjct: 30  PSTVPILIDKCANKKHL---KQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKV 86

Query: 139 FCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKACGALGW 197
           F ++   N+++W  +I          + L+ F++M  E    P+++  P V+KA   +  
Sbjct: 87  FDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSS 146

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           +  G+A+HG V+K  F   +F+++SLI  Y   GDL+ A  VF  ++ +++V+WNSMI G
Sbjct: 147 LLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISG 206

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           +VQ G  EEA+++F  M +E   P RV++  +LSA A    L+ G+ A      NG++++
Sbjct: 207 FVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDIN 266

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377
            +L +++++ Y K G LEDA  +F +M E+DIV+W                  ++++D Y
Sbjct: 267 LILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSW------------------TTMIDGY 308

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL-EGISPNIISW 436
           AK    D A++VF+ +   D+  WN L+++Y   G+  EA  +F ++QL +   PN ++ 
Sbjct: 309 AKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTL 368

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPN----------------------------- 467
            S +    + G M+    + + ++  G++ N                             
Sbjct: 369 ASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVER 428

Query: 468 --LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
             +  W+ +I+GL  +  G  AI  F +M ET +KP+  T T  L AC+    +  GR  
Sbjct: 429 RDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLF 488

Query: 526 HGYLIRHDLCLP-TPIVTSLVDMYAKCGNIHQAKRVFD---ISPSKELPVYNAMISGYAM 581
              +      +P +     +VD+  + G + +A  + +   I PS    V+ A++    +
Sbjct: 489 FNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSAS--VWGALLGACRI 546

Query: 582 HG 583
           +G
Sbjct: 547 YG 548


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 201/668 (30%), Positives = 329/668 (49%), Gaps = 90/668 (13%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN---VVAWNSMIVG 257
           G+ +H  V+ +G    V+V  +LI +Y  C   + A+ VFD  +  N   +   N ++ G
Sbjct: 22  GKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFD--VIENPFEISLCNGLMAG 79

Query: 258 YVQNGLNEEAIRVFYE-MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           Y +N + +EA+ +F + M    ++P   +  S+L A   L  +  G+  H   V  G+ +
Sbjct: 80  YTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMV 139

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ------------ 364
           D V+GSS++  Y+K    E A  +F  M ++D+  WN +I+ Y QSG+            
Sbjct: 140 DIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMR 199

Query: 365 ----------------------------------------SDVVVASSIVDMYAKCERID 384
                                                    D  V++++VDMY KC +++
Sbjct: 200 RFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLE 259

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
            A +VF  +  + VV WN+++  Y   G      +LF +M  EG+ P + +  S ++   
Sbjct: 260 MAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACS 319

Query: 445 RNGQMNEAK-------------DMFLQMQSLGV------------------QPNLITWTT 473
           ++ Q+ E K             D+FL    + +                  +   ++W  
Sbjct: 320 QSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNV 379

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +ISG        +A+  F EM ++ ++P   T T  L+AC+ +A+L  GR IH  ++  +
Sbjct: 380 MISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERN 439

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
           L     ++ +L+DMYAKCG + +A  VF   P ++L  + +MI+ Y  HG   EAL LF 
Sbjct: 440 LGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFA 499

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            + Q  + PD +TF  IL+ACSHAGLV++GL  F  M + + + P +EH+ C++ LL R 
Sbjct: 500 EMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRA 559

Query: 654 GNLDEALRVILTMP-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
           G L EA  ++ + P    D  ++ +L S C      +L   I+E+L+  +PD+   Y+ L
Sbjct: 560 GRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIIL 619

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           SN YA+ G+W+EV  VR  MK+ GL+KNPGCSWI+I E++  F   D SH   E I   L
Sbjct: 620 SNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKIVPFFVEDNSHYHLEGIGNIL 679

Query: 773 ALLGMHVR 780
           + L  H+ 
Sbjct: 680 SYLTSHME 687



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 166/631 (26%), Positives = 288/631 (45%), Gaps = 101/631 (16%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+  V  + +  G+ +H +++  G     + YV   L+  Y  C+  D A  +F    +
Sbjct: 9   LLRASVNSKSLKQGKVLHQKVVTLG--LQNDVYVCKNLISLYVSCNLFDYAKNVF--DVI 64

Query: 145 KNVFSWAAIIGL------NCRVGLSEKALIGFVE-MQEDGVSPDNFVLPNVLKACGALGW 197
           +N F  +   GL      NC   + ++AL  F + M    + PD++  P+VLKACG L  
Sbjct: 65  ENPFEISLCNGLMAGYTRNC---MYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRR 121

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           V  G+ +H  ++K G    + V SSL+ MY KC + E A K+FD M  ++V  WN++I  
Sbjct: 122 VVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISC 181

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           Y Q+G  EEA+R F  M   G EP  V++T+ +S+ A L  LD G++ H   V +G  +D
Sbjct: 182 YYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMD 241

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------- 363
           + + +++++ Y K G LE A  VF +M  + +V WN +I  Y   G              
Sbjct: 242 SFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYS 301

Query: 364 --------------------------------------QSDVVVASSIVDMYAKCERIDN 385
                                                 Q D+ + SS++D+Y KC ++++
Sbjct: 302 EGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVES 361

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----- 440
           A+ +F  +     V WN +++ Y   G+  +A RLF +M    + P+ I++ SV+     
Sbjct: 362 AETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQ 421

Query: 441 LGFLRNGQ-----------------MNEAKDMFLQM----QSLGV-----QPNLITWTTL 474
           L  L  G+                 M    DM+ +     ++ GV     + +L++WT++
Sbjct: 422 LAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSM 481

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           I+    +    EA+  F EML++ +KP   T    LSAC+    + +G      +I    
Sbjct: 482 ITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYG 541

Query: 535 CLP-TPIVTSLVDMYAKCGNIHQAKRVFDISP--SKELPVYNAMISGYAMHGLAVEALAL 591
            +P     + L+ +  + G +H+A  +   +P  S +  + + + S   +H      + +
Sbjct: 542 IIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEI 601

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
            +NL  K  D DS T+  + N  +  G  +E
Sbjct: 602 AENLIDKDPD-DSSTYIILSNMYASFGKWDE 631


>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
 gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
          Length = 740

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 208/729 (28%), Positives = 359/729 (49%), Gaps = 91/729 (12%)

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG------------- 161
           + Y+  +L+  Y +C   D A ++F  + V++V+SW A +   C+VG             
Sbjct: 6   DTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVFDGMP 65

Query: 162 ------------------LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
                               EKAL+ +  M  DG  P  F L +VL AC  +    FG  
Sbjct: 66  ERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMR 125

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDL-EEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            HG  +K G D  +FV ++L+ MY KCG + +   +VF+ +   N V++ ++I G  +  
Sbjct: 126 CHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLAREN 185

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASA---NLDALDE------GKQAHAVAVING 313
              EA+++F  M  +GV+   V +++ILS SA     D+L E      GKQ H +A+  G
Sbjct: 186 KVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLG 245

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV---- 369
              D  L +S++  Y+K   +  AE++F+ M E ++V+WN++I  + Q  +SD  V    
Sbjct: 246 FGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLT 305

Query: 370 ----------ASSIVDMYAKCER---IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
                       + + +   C R   ++  +++F+SI    V  WN +L+ Y++     E
Sbjct: 306 RMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEE 365

Query: 417 ASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQM---------------------- 449
           A   F QMQ + + P+  + + ++     L FL  G+                       
Sbjct: 366 AISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIA 425

Query: 450 --NEAKDMFLQ---MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK-PST 503
             +E + M +          + ++  W ++ISG   N    +A++ F+ M +T +  P+ 
Sbjct: 426 VYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNE 485

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
           T+    LS+C+ + SL +GR  HG +++      + + T+L DMY KCG I  A++ FD 
Sbjct: 486 TSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDA 545

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
              K   ++N MI GY  +G   EA+ L++ +   G  PD ITF ++L ACSH+GLV  G
Sbjct: 546 VLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETG 605

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
           LE+   M   H ++P ++H+ C+V+ L R G L++A ++    P    + +   LLS+C 
Sbjct: 606 LEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCR 665

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
              +  LA  ++E L++L+P +   YV LSN Y++  +W++ + ++ +M +  + K PG 
Sbjct: 666 VHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDDSAALQGLMNKNRVHKTPGQ 725

Query: 744 SWIQIGEEL 752
           SW   G +L
Sbjct: 726 SWTTYGNDL 734



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 141/549 (25%), Positives = 255/549 (46%), Gaps = 110/549 (20%)

Query: 211 VGFDGCVFVASSLIDMYGKCGDLEEARK-------------------------------V 239
           +G     ++ + L+D+Y +CGD + ARK                               V
Sbjct: 1   MGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEV 60

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FDGM  R+VV+WN+MI   V+ G  E+A+ V+  M  +G  P+R ++ S+LSA + +   
Sbjct: 61  FDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDG 120

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV-VFSRMVERDIVTWNLLIAS 358
             G + H VAV  G++ +  +G+++++ Y+K G + D  V VF  + + + V++  +I  
Sbjct: 121 VFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGG 180

Query: 359 YVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNS--------I 393
             +                   Q D V  S+I+ + A  E  D+  +++ +        +
Sbjct: 181 LARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCL 240

Query: 394 ILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
            LR     D+ L N+LL  YA       A  +F +M       N++SWN +I+GF +  +
Sbjct: 241 ALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMP----EVNVVSWNIMIVGFGQEYR 296

Query: 449 MNEAKDMFLQMQSLGVQPNLIT-------------------------------WTTLISG 477
            +++ +   +M+  G QPN +T                               W  ++SG
Sbjct: 297 SDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSG 356

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
            +      EAI  F++M    +KP  TT++  LS+C  +  L  G+ IHG +IR ++   
Sbjct: 357 YSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKN 416

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMHGLAVEALALFKNLQ 596
           + IV+ L+ +Y++C  +  ++ +FD   ++ ++  +N+MISG+  + L  +AL LF+ + 
Sbjct: 417 SHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMH 476

Query: 597 QKGI-DPDSITFTNILNACSH-----AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           Q  +  P+  +F  +L++CS       G    GL +  G  SD  V+ ++    C     
Sbjct: 477 QTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYC----- 531

Query: 651 SRCGNLDEA 659
            +CG +D A
Sbjct: 532 -KCGEIDSA 539


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 209/715 (29%), Positives = 352/715 (49%), Gaps = 93/715 (13%)

Query: 154 IGLNCRVGLSEKALIGF-VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212
           I L C+     +AL  F   ++   +  +     N++ AC  +  + +G+ +H ++LK  
Sbjct: 51  INLMCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHDHILKSN 110

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
               + + + +++MYGKCG L++ARK FD M  R+VV+W  MI GY QNG   +AI ++ 
Sbjct: 111 CQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYI 170

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
           +M   G  P +++  SI+ A      +D G Q H   + +G +   +  +++I+ Y+K G
Sbjct: 171 QMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFG 230

Query: 333 LLEDAEVV-------------------------------FSRMVERDIVTWNLLIASYVQ 361
            +  A  V                               F  M  + +   N  I   V 
Sbjct: 231 QIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVF 290

Query: 362 SG----------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
           S                         +V    S+ DMYAK   + +AK+ F  I   D+V
Sbjct: 291 SACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLV 350

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW----------------------- 436
            WN ++AA A+     EA   F QM   G+ P+ I++                       
Sbjct: 351 SWNAIIAALAN-SDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYI 409

Query: 437 ------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
                       NS++  + +   +++A ++F  +   G   NL++W  ++S  +Q+   
Sbjct: 410 IKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENG---NLVSWNAILSACSQHKQP 466

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
            EA   F+ ML +  KP   TIT  L  C ++ SL  G  +H + ++  L +   +   L
Sbjct: 467 GEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRL 526

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           +DMYAKCG +  A+ VFD + + ++  ++++I GYA  GL  EAL LF+ ++  G+ P+ 
Sbjct: 527 IDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNE 586

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
           +T+  +L+ACSH GLV EG  L+  M  +  + P+ EH  C+V+LL+R G L EA   I 
Sbjct: 587 VTYLGVLSACSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIK 646

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
               DPD  +  +LL++C      ++AE  +E++L+L+P N    V LSN +A++G W E
Sbjct: 647 KTGFDPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASAGNWKE 706

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           V+++R++MK+ G++K PG SWI++ +++HVF + D SHP+   IY  L  L + +
Sbjct: 707 VARLRNLMKQMGVQKVPGQSWIEVKDQIHVFFSEDSSHPQRGNIYTMLEDLWLQM 761


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 186/585 (31%), Positives = 318/585 (54%), Gaps = 34/585 (5%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           ++AS L+ +Y K   L  AR VFD +  +N  ++N+M++ Y  +  + +A+ +F  +   
Sbjct: 60  YLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSLASS 119

Query: 278 GVEPTRVSVTSILSA--SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            +    +S+T +L +  S  L  +  GK+ H   +  G + D  + +++I +YSK   L+
Sbjct: 120 NL-VNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLD 178

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSG------------------QSDVVVASSIVDMY 377
            +  VF RM +RD+V+WN +I+ Y Q G                  + + V   S++   
Sbjct: 179 LSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQAC 238

Query: 378 AKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
            + + +    +V   I+      D+ + N L+  YA  G    A  LF +M       + 
Sbjct: 239 GQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMS----EKDE 294

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
           +++ ++I G + +G ++++ ++F  M++      L TW  +I+GL QN+     +   +E
Sbjct: 295 VTYGAIISGLMLHGYVDQSLELFRGMKT----QILSTWNAVITGLVQNNRHEGVLDLVRE 350

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M   G +P+  T++  LS     +SL+ G+ IH Y I+        + T+++DMYAK G 
Sbjct: 351 MQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGY 410

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +  A+RVFD S  + L ++ A+IS YA+HG A  AL LF  + ++GI PD +TFT +L A
Sbjct: 411 LRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAA 470

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           C+H G+V++  E+F  MF  + ++P +EH+ CVV  L +   L EA   +  MP +P A 
Sbjct: 471 CAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAK 530

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           + G+LL     S++ EL + + ++L ++EP+N GNYV ++N Y+ +GRW E  +VR+ M 
Sbjct: 531 VWGALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMN 590

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL-ALLGM 777
           + GL+K PG SWI+  E L  F+A D      EEI+  L  LLG+
Sbjct: 591 KVGLQKIPGSSWIETSEGLRSFIATDTCTENVEEIHVILKGLLGL 635



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 161/557 (28%), Positives = 258/557 (46%), Gaps = 88/557 (15%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFA--RNEYVETKLVVFYAKCDALDVASRL 138
           IYG LL      R     +Q+HAR++     F+     Y+ +KLV  Y+K + L  A  +
Sbjct: 26  IYGHLLHHLTELRLPLQAKQLHARLI----LFSVTPENYLASKLVALYSKTNHLAFARYV 81

Query: 139 FCRLRVKNVFSWAAII---GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA- 194
           F ++  KN FS+ A++    L+ R G    AL  F  +    +  +N  +  +LK+  + 
Sbjct: 82  FDQIPHKNTFSYNAMLISYSLHNRHG---DALDLFSSLASSNL-VNNISITCLLKSLSSF 137

Query: 195 -LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
            L  V  G+ VHG+VL+ GFD  VFV ++LI  Y KC DL+ +RKVFD M  R+VV+WNS
Sbjct: 138 TLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNS 197

Query: 254 MIVGYVQNGLNEEAIRVFYEMT-LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN 312
           MI GY Q GL E+   ++ EM    G  P  V+V S+L A      L  G + H   V N
Sbjct: 198 MISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDN 257

Query: 313 GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASS 372
            +E+D  + +++I  Y+K G L+ A  +F  M E+D VT+  +I+  +  G         
Sbjct: 258 QVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGY-------- 309

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
                     +D + ++F  +  + +  WN ++       R      L  +MQ  G  PN
Sbjct: 310 ----------VDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPN 359

Query: 433 IISWNSVI---------------------LGFLRN--------------GQMNEAKDMFL 457
            ++ +SV+                     +G+ RN              G +  A+ +F 
Sbjct: 360 AVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFD 419

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
           Q +      +L+ WT +IS    +   N A+  F EML+ GI+P   T T  L+AC    
Sbjct: 420 QSK----DRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCG 475

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA-KCGNIHQAKRVFDISPSKE----LPVY 572
            +     I   + +     P      LV+ YA   G + +A+R   +S +KE    +P+ 
Sbjct: 476 MVDKAWEIFESMFKKYGIQP------LVEHYACVVGALGKARR---LSEAKEFVSKMPIE 526

Query: 573 -NAMISGYAMHGLAVEA 588
            +A + G  +HG ++ +
Sbjct: 527 PSAKVWGALLHGASISS 543



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 174/378 (46%), Gaps = 50/378 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +LQ C   +D+  G ++H  I+ N      +  V   L+  YAKC +LD A  LF  +  
Sbjct: 234 VLQACGQTQDLAFGMEVHKFIVDNQ--VEIDISVCNALIGLYAKCGSLDYARELFDEMSE 291

Query: 145 KNVFSWAAII-----------------GLNCRVGLSEKALI-GFV-------------EM 173
           K+  ++ AII                 G+  ++  +  A+I G V             EM
Sbjct: 292 KDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREM 351

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           Q  G  P+   L +VL        +  G+ +H Y +K+G+   ++VA+++IDMY K G L
Sbjct: 352 QALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYL 411

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
             A++VFD    R++V W ++I  Y  +G    A+ +F+EM  +G++P  V+ T++L+A 
Sbjct: 412 RGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAAC 471

Query: 294 ANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVT 351
           A+   +D+  +   ++    G++      + ++    K   L +A+   S+M +E     
Sbjct: 472 AHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAKV 531

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
           W  L+  +  S  SDV +  S+ D   + E     +   N +I+ ++         Y+  
Sbjct: 532 WGALL--HGASISSDVELGKSVCDYLFEIE----PENTGNYVIMANL---------YSQA 576

Query: 412 GRSGEASRLFYQMQLEGI 429
           GR  EA  +  +M   G+
Sbjct: 577 GRWKEADEVRERMNKVGL 594



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 4/209 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+ L +  +    +DL+ EM+   F+        +L    Y   +  G++IH+  +K G 
Sbjct: 332 ITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIG- 390

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            + RN YV T ++  YAK   L  A R+F + + +++  W AII      G +  AL  F
Sbjct: 391 -YHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLF 449

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL-KVGFDGCVFVASSLIDMYGK 229
            EM + G+ PD      VL AC   G V     +   +  K G    V   + ++   GK
Sbjct: 450 HEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGK 509

Query: 230 CGDLEEARKVFDGM-IARNVVAWNSMIVG 257
              L EA++    M I  +   W +++ G
Sbjct: 510 ARRLSEAKEFVSKMPIEPSAKVWGALLHG 538


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 202/628 (32%), Positives = 323/628 (51%), Gaps = 95/628 (15%)

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA--R 246
           L++C     +  G+ +H ++LK  F G     +SLI+MY KC  ++ + +VF+      +
Sbjct: 36  LQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTHHNK 95

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           NV A+N++I G++ N L + A+ ++ +M   G+ P + +   ++ A  + D         
Sbjct: 96  NVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDD--------- 146

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
                     D  + + I     KVGL                              + D
Sbjct: 147 ----------DGFVVTKIHGLMFKVGL------------------------------ELD 166

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
           V V S++V+ Y K   +  A +VF  + +RDVVLWN ++  +A +GR  EA  +F +M  
Sbjct: 167 VFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGG 226

Query: 427 EGISPNIISWNSV-----ILGFLRNGQM-----------------NEAKDMFLQMQSLGV 464
            G+ P   +   V     ++G   NG+                  N   DM+ + + +G 
Sbjct: 227 NGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGD 286

Query: 465 ---------QPNLITWTTLISGLTQNSCGNE---AILFFQEMLETGIKPSTTTITCALSA 512
                    + ++ +W +++S      CG+      LF + M  + ++P   T+T  L A
Sbjct: 287 ALSVFEMMDEIDIFSWNSIMS--VHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPA 344

Query: 513 CTDVASLRNGRAIHGYLI--------RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           CT +A+L +GR IHGY++         HD+     +  +L+DMYAKCGN+  A+ VF   
Sbjct: 345 CTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNM 404

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
             K++  +N MI+GY MHG   EAL +F  + Q  + P+ I+F  +L+ACSHAG+V EGL
Sbjct: 405 REKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGL 464

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
                M S + V PS+EH+ CV+++L R G L EA  ++LTMP   D     SLL+ C  
Sbjct: 465 GFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRL 524

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
            N+T+LAE  +  +++LEPD+ GNYV +SN Y   GR+ EV + R  MK++ ++K PGCS
Sbjct: 525 HNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCS 584

Query: 745 WIQIGEELHVFVACDRSHPKTEEIYATL 772
           WI++   +HVF+  DR+HP+TE IYA L
Sbjct: 585 WIELVNGVHVFITGDRTHPQTEYIYAGL 612



 Score =  205 bits (522), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 166/609 (27%), Positives = 281/609 (46%), Gaps = 71/609 (11%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF--CRLR 143
           LQ C +  ++  G+++H  +LKN  FF     + T L+  Y+KC  +D + R+F      
Sbjct: 36  LQSCAHNANLSKGKELHTHLLKNA-FFGSPLAI-TSLINMYSKCSLIDHSLRVFNFPTHH 93

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            KNVF++ A+I       L ++AL  + +M+  G++PD F  P V++ACG          
Sbjct: 94  NKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTK 153

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +HG + KVG +  VFV S+L++ Y K   + EA +VF+ +  R+VV WN+M+ G+ Q G 
Sbjct: 154 IHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGR 213

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
            EEA+ VF  M   GV P R +VT +LS  + +   D G+  H      G E   V+ ++
Sbjct: 214 FEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNA 273

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------QS 365
           +I+ Y K   + DA  VF  M E DI +WN +++ + + G                  Q 
Sbjct: 274 LIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQP 333

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILR------------DVVLWNTLLAAYADLGR 413
           D+V  ++++        + + +++   +++             DV+L N L+  YA  G 
Sbjct: 334 DLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGN 393

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
             +A  +F  M+      ++ SWN +I G+  +G   EA D+F +M    + PN I++  
Sbjct: 394 MRDARMVFVNMR----EKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVG 449

Query: 474 LISGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           L+S  +      E + F  EM  + G+ PS    TC +         R G+ +  Y    
Sbjct: 450 LLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLC-----RAGQLMEAY---- 500

Query: 533 DLCLPTPIVTSLV---DMYAKCGNIHQAKRVFDISPSKELPV-------YNAMISGYAMH 582
           DL L  P     V    + A C  +H    + +++ SK + +       Y  M + Y + 
Sbjct: 501 DLVLTMPFKADPVGWRSLLAAC-RLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVV 559

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G   E L     ++Q+ +             CS   LVN G+ +F+   +  +  P  E+
Sbjct: 560 GRYEEVLEWRYTMKQQNVKKRP--------GCSWIELVN-GVHVFI---TGDRTHPQTEY 607

Query: 643 FGCVVNLLS 651
               +N L+
Sbjct: 608 IYAGLNSLT 616



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 15/140 (10%)

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           T    L +C   A+L  G+ +H +L+++        +TSL++MY+KC  I  + RVF+  
Sbjct: 31  TCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFP 90

Query: 565 P--SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS------- 615
              +K +  YNA+I+G+  + L   ALAL+  ++  GI PD  TF  ++ AC        
Sbjct: 91  THHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFV 150

Query: 616 ----HAGLVNEGLEL--FVG 629
               H  +   GLEL  FVG
Sbjct: 151 VTKIHGLMFKVGLELDVFVG 170


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 211/762 (27%), Positives = 352/762 (46%), Gaps = 83/762 (10%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           Q+HA ++K G   A + +V T L+ FY     +     +F  +   N+ SW +++     
Sbjct: 80  QVHAHVIKCG--LACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAY 137

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
            G  ++ +  +  ++ DGV  +   +  V+++CG L     G  V G V+K G D  V V
Sbjct: 138 NGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSV 197

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           A+SLI M+G C  +EEA  VFD M  R+ ++WNS+I   V NG  E+++  F +M     
Sbjct: 198 ANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHA 257

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           +   ++++++L    +   L  G+  H + V +G+E +  + +S+++ YS+ G  EDAE 
Sbjct: 258 KTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEF 317

Query: 340 VFSRMVERDIVTWNLLIASYVQSG------------------------------------ 363
           VF +M ERD+++WN ++AS+V +G                                    
Sbjct: 318 VFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLET 377

Query: 364 -------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
                          ++++ +++V MY K   +  A++V   +  RD V WN L+  +AD
Sbjct: 378 LKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHAD 437

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM--------------------- 449
                 A   F  ++ EG+  N I+  +++  FL    +                     
Sbjct: 438 NKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETF 497

Query: 450 --NEAKDMFLQMQSLGV---------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
             +    M+ Q   L             N  TW  ++S       G EA+    +M   G
Sbjct: 498 VQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDG 557

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           I     + + A +   ++  L  G+ +H  +I+H       ++ + +DMY KCG I    
Sbjct: 558 IHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVF 617

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           R+     S+    +N +IS  A HG   +A   F  +   G+ PD +TF ++L+ACSH G
Sbjct: 618 RILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGG 677

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           LV+EGL  F  M +   V   +EH  C+++LL R G L EA   I  MP  P   +  SL
Sbjct: 678 LVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSL 737

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L+ C      ELA   ++ L +L+  +   YV  SN  A++ RW +V  VR  M+   ++
Sbjct: 738 LAACKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIK 797

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           K P CSW+++  ++  F   D+ HP+  EIYA L  L   +R
Sbjct: 798 KKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEELKKIIR 839



 Score =  207 bits (528), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 172/687 (25%), Positives = 307/687 (44%), Gaps = 95/687 (13%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y+K  +++ A  +F ++  +N  SW  ++    RVG  +KA+  F  M E GV P ++V 
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVA 61

Query: 186 PNVLKACGALGWVGFGR-AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
            +++ AC   G +  G   VH +V+K G    VFV +SL+  YG  G + E   VF  + 
Sbjct: 62  ASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIE 121

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
             N+V+W S++VGY  NG  +E + V+  +  +GV     ++ +++ +   L     G Q
Sbjct: 122 EPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQ 181

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG- 363
                + +G++    + +S+I+ +     +E+A  VF  M ERD ++WN +I + V +G 
Sbjct: 182 VLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGH 241

Query: 364 ---------------------------------------------------QSDVVVASS 372
                                                              +S+V V +S
Sbjct: 242 CEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNS 301

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ------- 425
           ++ MY++  + ++A+ VF+ +  RD++ WN+++A++ D G    A  L  +M        
Sbjct: 302 LLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATN 361

Query: 426 -------------------------LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
                                    L G+  N+I  N+++  + + G M  A+ +   M 
Sbjct: 362 YVTFTTALSACYNLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMP 421

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS-L 519
                 + +TW  LI G   N   N AI  F  + E G+  +  TI   LSA       L
Sbjct: 422 ----DRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLL 477

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
            +G  IH +++     L T + +SL+ MYA+CG+++ +  +FD+  +K    +NA++S  
Sbjct: 478 DHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSAN 537

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
           A +G   EAL L   ++  GI  D  +F+       +  L++EG +L   +   H  + +
Sbjct: 538 AHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLH-SLIIKHGFESN 596

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA-EYISEHL 698
                  +++  +CG +D+  R IL  P          L+S   +    + A E   E L
Sbjct: 597 DYVLNATMDMYGKCGEIDDVFR-ILPQPRSRSQRSWNILISALARHGFFQQAREAFHEML 655

Query: 699 -LQLEPDNPGNYVALSNAYAASGRWNE 724
            L L PD+   +V+L +A +  G  +E
Sbjct: 656 DLGLRPDHV-TFVSLLSACSHGGLVDE 681



 Score =  169 bits (427), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 127/525 (24%), Positives = 237/525 (45%), Gaps = 101/525 (19%)

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY K G +E A+ VFD M  RN  +WN+++ G+V+ G  ++A++ F  M   GV P+   
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 286 VTSILSASANLDALDEGK-QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
             S+++A      + EG  Q HA  +  G+  D  +G+S+++FY   G + + ++VF  +
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 345 VERDIVTWNLLIASYVQSG----------------------------------------- 363
            E +IV+W  L+  Y  +G                                         
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 364 -----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                       + V VA+S++ M+  C+ I+ A  VF+ +  RD + WN+++ A    G
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 413 RSGEASRLFYQMQL-----------------------------------EGISPNIISWN 437
              ++   F QM+                                     G+  N+   N
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCN 300

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           S++  + + G+  +A+ +F +M+    + +LI+W ++++    N     A+    EML+T
Sbjct: 301 SLLSMYSQAGKSEDAEFVFHKMR----ERDLISWNSMMASHVDNGNYPRALELLIEMLQT 356

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
               +  T T ALSAC ++ +L   + +H ++I   L     I  +LV MY K G++  A
Sbjct: 357 RKATNYVTFTTALSACYNLETL---KIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAA 413

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA-CSH 616
           +RV  I P ++   +NA+I G+A +     A+  F  L+++G+  + IT  N+L+A  S 
Sbjct: 414 QRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSP 473

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHF--GCVVNLLSRCGNLDEA 659
             L++ G+ +   +         +E F    ++ + ++CG+L+ +
Sbjct: 474 DDLLDHGMPIHAHIVV---AGFELETFVQSSLITMYAQCGDLNTS 515



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 160/379 (42%), Gaps = 44/379 (11%)

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
           MY+K   I++A+ VF+ +  R+   WN L++ +  +G   +A + F  M   G+ P+   
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 436 WNSVILGFLRNGQMNE--------------AKDMFLQMQSLGV----------------- 464
             S++    R+G M E              A D+F+    L                   
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 465 -QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
            +PN+++WT+L+ G   N C  E +  ++ +   G+  +   +   + +C  +     G 
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
            + G +I+  L     +  SL+ M+  C +I +A  VFD    ++   +N++I+    +G
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
              ++L  F  ++      D IT + +L  C  A  +  G  L  GM     VK  +E  
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLH-GMV----VKSGLESN 295

Query: 644 GCVVNLL----SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
            CV N L    S+ G  ++A  V   M  + D     S++++ V +     A  +   +L
Sbjct: 296 VCVCNSLLSMYSQAGKSEDAEFVFHKMR-ERDLISWNSMMASHVDNGNYPRALELLIEML 354

Query: 700 QLEPDNPGNYVALSNAYAA 718
           Q       NYV  + A +A
Sbjct: 355 QTR--KATNYVTFTTALSA 371


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 191/573 (33%), Positives = 307/573 (53%), Gaps = 29/573 (5%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           GDL+ A  +FD +   ++  W  +I G+ Q+G  ++AI ++  +    V P +  + S+ 
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A A    L   K+ H  A+  G   D VLG+++I+ + K   +  A  VF  MV +D+V
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 351 TWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           +W  +   YV  G                 +++ +  SSI+   A  + I   ++V +  
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA--DYIKLGREV-HGF 201

Query: 394 ILRD-----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           ILR+     V + + L+  YA      +A  +F  M       +I+SWN ++  +  N +
Sbjct: 202 ILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSM----YHRDIVSWNVMLTAYFLNKE 257

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
                 +F QM+  G++ N  +W   ISG  QN     A+    +M ++GIKP+  TI  
Sbjct: 258 YERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVS 317

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
           AL  CT++ SLR G+ IHGY+ RH       I T+LV +YAKCG++  ++ VF+  P K+
Sbjct: 318 ALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKD 377

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           +  +N MI   +MHG   E+L LF  +   G++P+S+TF  +L+ CSH+ L +EGL +F 
Sbjct: 378 VVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFN 437

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
            M S+H + P  +H+ C+V++LSR G L+EA   I  MP +P A   G+LL  C      
Sbjct: 438 SMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNV 497

Query: 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           EL    +  L ++EPDN GNYV LSN    + +W E S++R +M++KGL K PG SW+Q+
Sbjct: 498 ELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQV 557

Query: 749 GEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
             +++ FV  D+S+ + + IY  L  +   +RL
Sbjct: 558 KNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRL 590



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 219/465 (47%), Gaps = 69/465 (14%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           L  A  LF ++   ++ +W  +I  + + G  +KA+  +  +    V PD FVL +V KA
Sbjct: 27  LKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKA 86

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C A G +   + +H   ++ GF+  + + ++LIDM+GKC  +  AR VFD M+ ++VV+W
Sbjct: 87  CAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSW 146

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
            SM   YV  G+  + I +F EM L G+    ++V+SIL A A  D +  G++ H   + 
Sbjct: 147 TSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA--DYIKLGREVHGFILR 204

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY------------ 359
           N ME +  + S+++N Y+    L+ A +VF  M  RDIV+WN+++ +Y            
Sbjct: 205 NEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGL 264

Query: 360 -----------------------VQSGQSDVVVA--------------SSIVDMYAKCER 382
                                  +Q+GQ ++ +                +IV     C  
Sbjct: 265 FHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTN 324

Query: 383 IDNAK-------QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
           +++ +        VF    + DV +   L+  YA  G    +  +F  M  +    ++++
Sbjct: 325 LESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRK----DVVA 380

Query: 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM- 494
           WN++I+    +G+  E+  +F +M   GV+PN +T+  ++SG + +   +E +L F  M 
Sbjct: 381 WNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMS 440

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGY-LIRHDLCLPT 538
            E  I P     +C +    DV S R GR    Y  IR     PT
Sbjct: 441 SEHSITPDADHYSCMV----DVLS-RAGRLEEAYDFIRKMPIEPT 480



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/487 (22%), Positives = 226/487 (46%), Gaps = 60/487 (12%)

Query: 15  SHTKPQKPLKLSQTHLTK------LRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLT 68
           ++ +P + +KL +T L        L   D   E   +++   IS  ++    ++A+D+ +
Sbjct: 7   ANLQPCQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYS 66

Query: 69  EMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK 128
            +  RN +    +   + + C    D+   ++IH   ++ G  F ++  +   L+  + K
Sbjct: 67  TLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFG--FNKDLVLGNALIDMFGK 124

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188
           C  ++ A  +F  + VK+V SW ++       G+  + ++ F EM  +G+  ++  + ++
Sbjct: 125 CKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSI 184

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           L AC    ++  GR VHG++L+   +G V+V+S+L++MY     L++AR VFD M  R++
Sbjct: 185 LPACA--DYIKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDI 242

Query: 249 VAWNSMIVGY-----------------------------------VQNGLNEEAIRVFYE 273
           V+WN M+  Y                                   +QNG +E A+ +  +
Sbjct: 243 VSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCK 302

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M   G++P R+++ S L    NL++L  GK+ H     +    D  + ++++  Y+K G 
Sbjct: 303 MQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGD 362

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           LE +  VF+ M  +D+V WN +I +    G+                E +    ++ +S 
Sbjct: 363 LELSRHVFNTMPRKDVVAWNTMIMANSMHGKGG--------------ESLILFNKMLDSG 408

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEA 452
           +  + V +  +L+  +    + E   +F  M  E  I+P+   ++ ++    R G++ EA
Sbjct: 409 VEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEA 468

Query: 453 KDMFLQM 459
            D   +M
Sbjct: 469 YDFIRKM 475


>gi|302756495|ref|XP_002961671.1| hypothetical protein SELMODRAFT_264 [Selaginella moellendorffii]
 gi|300170330|gb|EFJ36931.1| hypothetical protein SELMODRAFT_264 [Selaginella moellendorffii]
          Length = 934

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 214/757 (28%), Positives = 360/757 (47%), Gaps = 102/757 (13%)

Query: 56  KEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARN 115
           +  ++ EA++L  EM    F      +  +L        +  G+ +H  + + G     +
Sbjct: 184 QHDRVEEAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLAEAG--HEDD 241

Query: 116 EYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
             V+T LV  Y KC ++  A  +F R+   +V  W+A+I  +      E++L  F +MQ 
Sbjct: 242 VVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHVNCAEYEESLRLFRKMQL 301

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
           +G  P+N  L +VL AC     +  G+ +H  V++ G++G + V ++++ MYGKCG LE+
Sbjct: 302 EGNRPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIVGNAIVSMYGKCGSLED 361

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A  VF  +  R+VV  N M+      G +  A+++F  M  EG+E   ++  S L A + 
Sbjct: 362 AWDVFHRVPRRSVVTCNGMMGACAVQGDSSGALKLFRYMVHEGIEFDNITFLSALCACSG 421

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
              L  G+  HA  +  G+ELD  + ++++N Y K G +E AE VF  + E+D+ TWN +
Sbjct: 422 TSGLSHGEFFHARMLECGLELDIFVANALVNMYGKCGKVEAAEHVFEELPEQDVRTWNAM 481

Query: 356 IASYVQ------------------------------------------------SGQSDV 367
           I +YVQ                                                +G S+ 
Sbjct: 482 ILAYVQNEEERSGLLVFRHMMQSGYKPDEVTFAITLNACYHPRFLRDVHSLISETGISNT 541

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA------------AYADLGRSG 415
           VV +++V MY +   ++   QVF  +    +  WN ++A            A+   GR  
Sbjct: 542 VVQNALVVMYGRFGLLEEGYQVFEKLDQESITSWNVMIASCAQTCWNSVIFAHVQSGRDS 601

Query: 416 EASRLFYQMQLEGISPNI-------------------ISW-----------------NSV 439
           EA ++F++MQ  G+ P+                    I W                 N++
Sbjct: 602 EALKMFWRMQQAGVWPDKTSFVAVVKAYSNVGMTEPEIDWLRAVIANSDVEDGVPIGNAL 661

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           I  + R G   +A+D+F  M     + + +TW T++S   Q   G ++I  F++ML+ G 
Sbjct: 662 ISMYGRCGSFGKARDLFDSM----AERDAVTWNTMMSVSEQLEHGRDSIQLFRQMLQEGT 717

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
            P   TI   L+ C  + +L+ G+AI  +L    L     I  ++++MYAKCG+  +A+R
Sbjct: 718 PPDKVTILTVLNVCASLPALQEGKAICVWLDHTPLSANQMIGNAILNMYAKCGSRDEARR 777

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           +F +   ++   +NA+I  Y  +     A  +F+ +Q +G  PD++TFT IL+ CSH GL
Sbjct: 778 IFSVMQGRDAVSWNALIGAYGSYSRGRYAFQIFQAMQLEGSTPDAVTFTTILSVCSHGGL 837

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           + E ++ F  M  D+ V+    H+GC+V+LL R G + EA  V   MP   D  +  +LL
Sbjct: 838 LGEAVKWFRWMREDYYVEAETGHYGCIVDLLGRLGRVPEAEEVAEKMPAGTDPIVWTTLL 897

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           S C    ET+  +  +E L++L+P+    YV LS  Y
Sbjct: 898 SACQVHGETQRGKRAAERLVELDPEVTSAYVVLSTIY 934



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 185/699 (26%), Positives = 322/699 (46%), Gaps = 116/699 (16%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL- 142
           +LL+ C   +D+  G+QIHA I ++     ++  V   L+  Y KC +L  AS++F +L 
Sbjct: 10  DLLRQCSRSKDLARGRQIHASITRSSA--PQDPVVGNWLIQMYLKCGSLIDASQVFYQLL 67

Query: 143 --RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
              V N+ +W A+I    R G ++ A+  F +MQ +G SPD   L  + +ACG    +  
Sbjct: 68  ETSVVNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLED 127

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ +H Y L    D  V + SSLI MYGKCG L EA  +F  M   N VAWNS++  ++Q
Sbjct: 128 GKKIHAY-LSCNSD--VVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFIQ 184

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +   EEA+ +++EM   G  P+R +  ++L+A ++L++L  GK  H      G E D V+
Sbjct: 185 HDRVEEAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLAEAGHEDDVVV 244

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG----------------- 363
            ++++N Y K G + +A  VF RM   D++ W+ +I+++V                    
Sbjct: 245 QTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHVNCAEYEESLRLFRKMQLEGN 304

Query: 364 -----------------------------------QSDVVVASSIVDMYAKCERIDNAKQ 388
                                              + D++V ++IV MY KC  +++A  
Sbjct: 305 RPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIVGNAIVSMYGKCGSLEDAWD 364

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW------------ 436
           VF+ +  R VV  N ++ A A  G S  A +LF  M  EGI  + I++            
Sbjct: 365 VFHRVPRRSVVTCNGMMGACAVQGDSSGALKLFRYMVHEGIEFDNITFLSALCACSGTSG 424

Query: 437 -----------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
                                  N+++  + + G++  A+ +F ++    V+    TW  
Sbjct: 425 LSHGEFFHARMLECGLELDIFVANALVNMYGKCGKVEAAEHVFEELPEQDVR----TWNA 480

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +I    QN      +L F+ M+++G KP   T    L+AC     LR+   +H  LI   
Sbjct: 481 MILAYVQNEEERSGLLVFRHMMQSGYKPDEVTFAITLNACYHPRFLRD---VHS-LISET 536

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS------------GYAM 581
               T +  +LV MY + G + +  +VF+    + +  +N MI+             +  
Sbjct: 537 GISNTVVQNALVVMYGRFGLLEEGYQVFEKLDQESITSWNVMIASCAQTCWNSVIFAHVQ 596

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
            G   EAL +F  +QQ G+ PD  +F  ++ A S+ G+    ++    + ++  V+  + 
Sbjct: 597 SGRDSEALKMFWRMQQAGVWPDKTSFVAVVKAYSNVGMTEPEIDWLRAVIANSDVEDGVP 656

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
               ++++  RCG+  +A  +  +M  + DA    +++S
Sbjct: 657 IGNALISMYGRCGSFGKARDLFDSMA-ERDAVTWNTMMS 694



 Score =  245 bits (625), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 176/714 (24%), Positives = 315/714 (44%), Gaps = 110/714 (15%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++ ++  Q + A+ L  +M+             + + C    ++  G++IHA +  N D
Sbjct: 81  IAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGKKIHAYLSCNSD 140

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
                  + + L+  Y KC +L  A  +F  +   N  +W +++G   +    E+A+  +
Sbjct: 141 VV-----LGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFIQHDRVEEAMELY 195

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EM + G  P       VL A  +L  +  G+ VH  + + G +  V V ++L++MYGKC
Sbjct: 196 WEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLAEAGHEDDVVVQTALVNMYGKC 255

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G + EA +VFD M   +V+ W+++I  +V     EE++R+F +M LEG  P  V++ S+L
Sbjct: 256 GSVVEAVEVFDRMPRHDVILWSAVISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVL 315

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA     AL+ GK  H   V  G E D ++G++I++ Y K G LEDA  VF R+  R +V
Sbjct: 316 SACEGPQALETGKGIHECVVEAGYEGDLIVGNAIVSMYGKCGSLEDAWDVFHRVPRRSVV 375

Query: 351 TWNLLIASYVQSGQS--------------------------------------------- 365
           T N ++ +    G S                                             
Sbjct: 376 TCNGMMGACAVQGDSSGALKLFRYMVHEGIEFDNITFLSALCACSGTSGLSHGEFFHARM 435

Query: 366 -------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                  D+ VA+++V+MY KC +++ A+ VF  +  +DV  WN ++ AY          
Sbjct: 436 LECGLELDIFVANALVNMYGKCGKVEAAEHVFEELPEQDVRTWNAMILAYVQNEEERSGL 495

Query: 419 RLFYQMQLEGISP-------------------------------NIISWNSVILGFLRNG 447
            +F  M   G  P                               N +  N++++ + R G
Sbjct: 496 LVFRHMMQSGYKPDEVTFAITLNACYHPRFLRDVHSLISETGISNTVVQNALVVMYGRFG 555

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN-------------EAILFFQEM 494
            + E   +F ++     Q ++ +W  +I+   Q +C N             EA+  F  M
Sbjct: 556 LLEEGYQVFEKLD----QESITSWNVMIASCAQ-TCWNSVIFAHVQSGRDSEALKMFWRM 610

Query: 495 LETGIKPSTTTITCALSACTDVASLRNG-RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
            + G+ P  T+    + A ++V         +   +   D+    PI  +L+ MY +CG+
Sbjct: 611 QQAGVWPDKTSFVAVVKAYSNVGMTEPEIDWLRAVIANSDVEDGVPIGNALISMYGRCGS 670

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
             +A+ +FD    ++   +N M+S         +++ LF+ + Q+G  PD +T   +LN 
Sbjct: 671 FGKARDLFDSMAERDAVTWNTMMSVSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLNV 730

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTM 666
           C+    + EG  + V +  DH    + +  G  ++N+ ++CG+ DEA R+   M
Sbjct: 731 CASLPALQEGKAICVWL--DHTPLSANQMIGNAILNMYAKCGSRDEARRIFSVM 782



 Score =  222 bits (565), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 146/526 (27%), Positives = 243/526 (46%), Gaps = 99/526 (18%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D FV  ++L+ C     +  GR +H  + +        V + LI MY KCG L +A +VF
Sbjct: 6   DRFV--DLLRQCSRSKDLARGRQIHASITRSSAPQDPVVGNWLIQMYLKCGSLIDASQVF 63

Query: 241 DGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
             ++     N+VAW ++I  Y +NG  + AIR+F +M LEG  P R+++ +I  A  N +
Sbjct: 64  YQLLETSVVNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPE 123

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
            L++GK+ HA    N    D VLGSS+I  Y K G L +A ++F  M E + V WN L+ 
Sbjct: 124 NLEDGKKIHAYLSCNS---DVVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMG 180

Query: 358 SYVQSGQ----------------------------------------------------S 365
           +++Q  +                                                     
Sbjct: 181 AFIQHDRVEEAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLAEAGHED 240

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           DVVV +++V+MY KC  +  A +VF+ +   DV+LW+ +++A+ +     E+ RLF +MQ
Sbjct: 241 DVVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHVNCAEYEESLRLFRKMQ 300

Query: 426 LEGISPN-----------------------------------IISWNSVILGFLRNGQMN 450
           LEG  PN                                   +I  N+++  + + G + 
Sbjct: 301 LEGNRPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIVGNAIVSMYGKCGSLE 360

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
           +A D+F ++     + +++T   ++         + A+  F+ M+  GI+    T   AL
Sbjct: 361 DAWDVFHRVP----RRSVVTCNGMMGACAVQGDSSGALKLFRYMVHEGIEFDNITFLSAL 416

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
            AC+  + L +G   H  ++   L L   +  +LV+MY KCG +  A+ VF+  P +++ 
Sbjct: 417 CACSGTSGLSHGEFFHARMLECGLELDIFVANALVNMYGKCGKVEAAEHVFEELPEQDVR 476

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
            +NAMI  Y  +      L +F+++ Q G  PD +TF   LNAC H
Sbjct: 477 TWNAMILAYVQNEEERSGLLVFRHMMQSGYKPDEVTFAITLNACYH 522



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 135/291 (46%), Gaps = 21/291 (7%)

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           N +I  +L+ G + +A  +F Q+    V  NL+ WT LI+   +N     AI  FQ+M  
Sbjct: 44  NWLIQMYLKCGSLIDASQVFYQLLETSV-VNLVAWTALIAAYARNGQTKLAIRLFQQMQL 102

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYL-IRHDLCLPTPIVTSLVDMYAKCGNIH 555
            G  P   T+     AC +  +L +G+ IH YL    D+ L     +SL+ MY KCG++ 
Sbjct: 103 EGNSPDRITLVTIFEACGNPENLEDGKKIHAYLSCNSDVVLG----SSLITMYGKCGSLS 158

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           +A  +F          +N+++  +  H    EA+ L+  + Q G  P   TF  +L A S
Sbjct: 159 EACLMFQSMEEWNTVAWNSLMGAFIQHDRVEEAMELYWEMLQCGFLPSRPTFLTVLAAIS 218

Query: 616 ------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669
                 H  LV++ L    G   D  V+ ++      VN+  +CG++ EA+ V   MP  
Sbjct: 219 SLESLRHGKLVHDTLAE-AGHEDDVVVQTAL------VNMYGKCGSVVEAVEVFDRMP-R 270

Query: 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
            D  +  +++S  V   E E +  +    +QLE + P N   +S   A  G
Sbjct: 271 HDVILWSAVISAHVNCAEYEESLRLFRK-MQLEGNRPNNVTLVSVLSACEG 320



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 14/204 (6%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI---SPS 566
           L  C+    L  GR IH  + R        +   L+ MY KCG++  A +VF     +  
Sbjct: 12  LRQCSRSKDLARGRQIHASITRSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLETSV 71

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG--L 624
             L  + A+I+ YA +G    A+ LF+ +Q +G  PD IT   I  AC +   + +G  +
Sbjct: 72  VNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGKKI 131

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
             ++   SD  +  S+      + +  +CG+L EA  +  +M  + +     SL+   ++
Sbjct: 132 HAYLSCNSDVVLGSSL------ITMYGKCGSLSEACLMFQSME-EWNTVAWNSLMGAFIQ 184

Query: 685 SNETELAEYISEHLLQ--LEPDNP 706
            +  E A  +   +LQ    P  P
Sbjct: 185 HDRVEEAMELYWEMLQCGFLPSRP 208


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 185/591 (31%), Positives = 316/591 (53%), Gaps = 55/591 (9%)

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           I    + G + EARK FD +  + + +WNS++ GY  NGL  EA ++F EM     E   
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMP----ERNI 79

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFS 342
           VS   ++S       ++E +    +     M   NV+  ++++  Y + G++ +AE++F 
Sbjct: 80  VSWNGLVSGYIKNRMIEEARNVFEI-----MPERNVVSWTAMVKGYVQEGMVVEAELLFW 134

Query: 343 RMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQV 389
           RM ER+ V+W ++    +  G+              DVV +++++    +  R+D A+++
Sbjct: 135 RMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREI 194

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F+ +  R+V+ W T++  Y    R   A +LF  M         +SW S++LG+  +G++
Sbjct: 195 FDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMP----EKTEVSWTSMLLGYTLSGRI 250

Query: 450 NEAKDMFLQMQ------------SLGVQPNLI---------------TWTTLISGLTQNS 482
            +A++ F  M             +LG    ++               TW  +I    +  
Sbjct: 251 EDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKG 310

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
              EA+  F +M   G++PS  ++   LS C  +ASL+ GR +H +L+R        + +
Sbjct: 311 FELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVAS 370

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
            L+ MY KCG + +AK VFD  PSK++ ++N++ISGYA HGL  EAL +F  +   G  P
Sbjct: 371 VLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMP 430

Query: 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
           + +T   IL ACS+ G + EGLE+F  M S   V P++EH+ C V++L R G +D+A+ +
Sbjct: 431 NKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMEL 490

Query: 663 ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722
           I +M   PDA + G+LL  C   +  +LAE  ++ L ++EP+N G Y+ LS+  A+  +W
Sbjct: 491 INSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINASRSKW 550

Query: 723 NEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD-RSHPKTEEIYATL 772
            +V+++R  M+ K + K PGCSWI++G+++H+F     R+HP+   I   L
Sbjct: 551 GDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQAMILMML 601



 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 170/350 (48%), Gaps = 57/350 (16%)

Query: 49  HQISSLSKEKQIREAVDLLTEMKCRN-----------------------FQIGPEIYGEL 85
           + I  L +E ++ EA ++  EM+ RN                       F++ PE     
Sbjct: 177 NMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPE----- 231

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVA---------- 135
            +  V    M  G  +  RI    +FF   E +  K V+    C+A+ VA          
Sbjct: 232 -KTEVSWTSMLLGYTLSGRIEDAEEFF---EVMPMKPVI---ACNAMIVALGEVGEIVKA 284

Query: 136 SRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
            R+F ++  ++  +W  +I    R G   +AL  F +MQ  GV P    L ++L  C  L
Sbjct: 285 RRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATL 344

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
             + +GR VH ++++  FDG V+VAS L+ MY KCG+L +A+ VFD   +++++ WNS+I
Sbjct: 345 ASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSII 404

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            GY  +GL EEA++VF+EM L G  P +V++ +IL+A +    L+EG     + +   ME
Sbjct: 405 SGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEG-----LEIFESME 459

Query: 316 LDNVLGSSIINFYSKVGLLEDA-------EVVFSRMVERDIVTWNLLIAS 358
               +  ++ ++   V +L  A       E++ S  ++ D   W  L+ +
Sbjct: 460 SKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGA 509



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 128/520 (24%), Positives = 220/520 (42%), Gaps = 82/520 (15%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           LV  Y K   ++ A  +F  +  +NV SW A++    + G+  +A + F  M E      
Sbjct: 85  LVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPER----- 139

Query: 182 NFVLPNVLKACGALGWVGFGR---AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           N V   V+      G +  GR   A   Y +  G D  V  ++++I    + G ++EAR+
Sbjct: 140 NEVSWTVMFG----GLIDGGRIDDARKLYDMMPGKD--VVASTNMIGGLCREGRVDEARE 193

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +FD M  RNV+ W +MI GY QN   + A ++F  M     E T VS TS+L     L  
Sbjct: 194 IFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMP----EKTEVSWTSML-----LGY 244

Query: 299 LDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
              G+   A      M +  V+  +++I    +VG +  A  VF +M +RD  TW  +I 
Sbjct: 245 TLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIK 304

Query: 358 SYVQSG----------------------------------------------------QS 365
           +Y + G                                                      
Sbjct: 305 AYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDG 364

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           DV VAS ++ MY KC  +  AK VF+    +D+++WN++++ YA  G   EA ++F++M 
Sbjct: 365 DVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMP 424

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCG 484
           L G  PN ++  +++      G++ E  ++F  M+S   V P +  ++  +  L +    
Sbjct: 425 LSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKV 484

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL--IRHDLCLPTPIVT 542
           ++A+     M    IKP  T     L AC   + L         L  I  +   P  +++
Sbjct: 485 DKAMELINSMT---IKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLS 541

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           S+    +K G++ + ++        + P  + +  G  +H
Sbjct: 542 SINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVH 581



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 161/400 (40%), Gaps = 69/400 (17%)

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           ++  + +G+  EA + F  ++ + I     SWNS++ G+  NG   EA+ MF +M     
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIG----SWNSIVSGYFANGLPREARQMFDEMP---- 75

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
           + N+++W  L+SG  +N    EA   F+ M E  +   T  +               G  
Sbjct: 76  ERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMV--------------KGYV 121

Query: 525 IHGYLIRHDLC---LPTPIVTSLVDMYAKC---GNIHQAKRVFDISPSKELPVYNAMISG 578
             G ++  +L    +P     S   M+      G I  A++++D+ P K++     MI G
Sbjct: 122 QEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGG 181

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
               G   EA  +F  ++++ +    IT+T ++        V+   +LF  M    +V  
Sbjct: 182 LCREGRVDEAREIFDEMRERNV----ITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSW 237

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDP----DAHIIGSLLSTCVKSNETELAEYI 694
           +    G  ++     G +++A      MP  P    +A I+             E+ E +
Sbjct: 238 TSMLLGYTLS-----GRIEDAEEFFEVMPMKPVIACNAMIVAL----------GEVGEIV 282

Query: 695 SEHLL--QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN-----------P 741
               +  Q+E  +   +  +  AY   G   E  ++   M+ +G+R +            
Sbjct: 283 KARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCA 342

Query: 742 GCSWIQIGEELHV-FVACDRSHPKTEEIYATLALLGMHVR 780
             + +Q G ++H   V C        ++Y    L+ M+V+
Sbjct: 343 TLASLQYGRQVHAHLVRCQFDG----DVYVASVLMTMYVK 378


>gi|414867301|tpg|DAA45858.1| TPA: hypothetical protein ZEAMMB73_727333 [Zea mays]
          Length = 805

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 207/763 (27%), Positives = 379/763 (49%), Gaps = 102/763 (13%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  L Q C    D+ + +++HAR+L  G    R+  + +++++ YA    L      F  
Sbjct: 49  FALLFQNCT---DVRSLKKLHARVLTLG--LGRDVILGSEILICYASLGVLCKTRLCFQG 103

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
               ++  W +++    R G  E+A++ +  ++   +  D   +   LK+C  L  +  G
Sbjct: 104 FLNNDLAEWNSVMVDIFRAGYPEEAILLYRGLKLRQIDLDEKTVTFGLKSCIELRNLLLG 163

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H   +K+G     FV SSL+ +Y K   +++++K F+ ++ +++V++ SMI GY +N
Sbjct: 164 KGMHADSVKLGLSRDKFVGSSLVGLYSKLARMDDSQKAFEEILDKDIVSYTSMITGYSEN 223

Query: 262 --GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL-DN 318
               +  A ++  +M+   +E  RV++ S+L  + NL A+ EGK  H  ++   + + D 
Sbjct: 224 MDSTSWNAFKIVSDMSWSNLEVNRVTLVSLLQVAGNLGAIREGKSVHCYSIRRDIGISDE 283

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS------------- 365
           VL +S+++ Y + G  + A  V     +  + +WN ++A  V++GQS             
Sbjct: 284 VLETSLVHMYMQCGACQLASAVLKNSAQ-SVASWNAMLAGLVRTGQSGNAIHYLYIMLYE 342

Query: 366 ----------------------------------------DVVVASSIVDMYAKCERIDN 385
                                                   DVV+A++++ +Y KC RI  
Sbjct: 343 HKVVPDSVTYANVISACAELCNSGYAASVHAYIIRRSIPLDVVLATALIKVYLKCTRITI 402

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL---- 441
           +K++FN ++++D V +N ++  Y   G   EA  L  +M  E ++PN ++  S++     
Sbjct: 403 SKRLFNQLVVKDTVSYNAMIYGYLQNGMVNEAIALLKEMVTECVAPNFVTILSLLAAIAD 462

Query: 442 -----------------GFLRN--------------GQMNEAKDMFLQMQSLGVQPNLIT 470
                            GF  N              G++  A+ +F   ++     NLI+
Sbjct: 463 HKDFARGRWIHGFSIRHGFCSNVDIANQIIRMYSGCGKIASARIVFASFEN----KNLIS 518

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           WTT++ G      G + +  FQ +++    KP +  +  A+ A ++   L+  + +H ++
Sbjct: 519 WTTMMMGCLFCGHGGQTVELFQLLMQQHDNKPDSIAVMTAIQAVSEFGHLKGVKQVHCFV 578

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
            R  L   T  + SL+  YAKCG +  +  +F     ++L  +N+MIS Y MHG   + L
Sbjct: 579 YRALLEKDTKTMNSLITAYAKCGRLDLSVSLFLSLEHRDLDSWNSMISAYGMHGFYTKVL 638

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
            +FK +++  I+PD +TF+++L+ACSHAGL+ EGL +F  M S + V+P  EH+GC V+L
Sbjct: 639 EMFKLMEEGNINPDGLTFSSVLSACSHAGLIKEGLHIFQSMTSMYSVRPQEEHYGCFVDL 698

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
           +SR G+L+E  + I     +  + ++ +LLS C     T L + IS  LL++   NPG Y
Sbjct: 699 MSRAGHLEEGYKFIKLSTLNDKSSVLCALLSACRTYGNTMLGQVISNELLEVGQQNPGTY 758

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
             +S  +A  G+WN+ + +R+  KE GLRK PG S I+  E++
Sbjct: 759 ALISEVFAQKGQWNKSASIRNRAKENGLRKLPGSSLIESVEQV 801


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 193/597 (32%), Positives = 325/597 (54%), Gaps = 34/597 (5%)

Query: 202 RAVHGYVLKVGFDGCVFVASSL--IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           +  H ++++ G     + AS L  I        LE ARKVFD +   N   WN++I  Y 
Sbjct: 48  KQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYA 107

Query: 260 QNGLNEEAIRVFYEMTLEGVE--PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
                  +I  F +M     +  P + +   ++ A+A + +L  G+  H +A+ + +  D
Sbjct: 108 SGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSD 167

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------QS 365
             + +S+I+ Y   G L+ A  VF+ + E+D+V+WN +I  +VQ G            +S
Sbjct: 168 VFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMES 227

Query: 366 DVVVAS--SIVDMYAKCERIDN---AKQVFNSI----ILRDVVLWNTLLAAYADLGRSGE 416
           + V AS  ++V + + C +I +    ++V + I    +  ++ L N +L  Y   G   +
Sbjct: 228 EDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIED 287

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           A RLF  M+      + ++W +++ G+  +     A+++   M     + +++ W  LIS
Sbjct: 288 AKRLFDAME----EKDNVTWTTMLDGYAISEDYEAAREVLNAMP----KKDIVAWNALIS 339

Query: 477 GLTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
              QN   NEA+L F E+ L+  IK +  T+   LSAC  V +L  GR IH Y+ ++ + 
Sbjct: 340 AYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIK 399

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           +   + ++L+ MY+KCG++ +A+ VF+    +++ V++AMI G AMHG   EA+ +F  +
Sbjct: 400 MNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKM 459

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           Q+  + P+ +TFTN+  ACSH GLV+E   LF  M S + + P  +H+ C+V++L R G 
Sbjct: 460 QEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGY 519

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           L++A++ I  MP  P   + G+LL  C       LAE     LL+LEP N G +V LSN 
Sbjct: 520 LEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNI 579

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           YA SG+W+ VS++R  M+  GL+K PGCS I+I   +H F++ D +HP +E++Y  L
Sbjct: 580 YAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKL 636



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 134/527 (25%), Positives = 255/527 (48%), Gaps = 66/527 (12%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCD--ALDVASRLFCRLRVKNVFSWAAIIGL 156
           +Q HA +++ G F   + Y  +KL    A     +L+ A ++F  +   N F+W  +I  
Sbjct: 48  KQTHAHMIRTGMF--SDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRA 105

Query: 157 NCRVGLSEKALIGFVEM--QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD 214
                    ++  F++M   E    P+ +  P ++KA   +  +  G+++HG  +K    
Sbjct: 106 YASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVG 165

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
             VFVA+SLI  Y  CGDL+ A KVF  +  ++VV+WNSMI G+VQ G  ++A+ +F +M
Sbjct: 166 SDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKM 225

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
             E V+ + V++  +LSA A +  L+ G++  +    N + ++  L +++++ Y+K G +
Sbjct: 226 ESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSI 285

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
           EDA+ +F  M E+D VTW                  ++++D YA  E  + A++V N++ 
Sbjct: 286 EDAKRLFDAMEEKDNVTW------------------TTMLDGYAISEDYEAAREVLNAMP 327

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE--------------------------- 427
            +D+V WN L++AY   G+  EA  +F+++QL+                           
Sbjct: 328 KKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGR 387

Query: 428 ---------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
                    GI  N    +++I  + + G + +A+++F  ++    + ++  W+ +I GL
Sbjct: 388 WIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE----KRDVFVWSAMIGGL 443

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
             + CG+EA+  F +M E  +KP+  T T    AC+    +    ++   +      +P 
Sbjct: 444 AMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPE 503

Query: 539 -PIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHG 583
                 +VD+  + G + +A +  +  P      V+ A++    +H 
Sbjct: 504 DKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 550



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 17/214 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKC-RNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           IS+  +  +  EA+ +  E++  +N ++        L  C     +  G+ IH+ I KNG
Sbjct: 338 ISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNG 397

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
                N YV + L+  Y+KC  L+ A  +F  +  ++VF W+A+IG     G   +A+  
Sbjct: 398 --IKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDM 455

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-------HGYVLKVGFDGCVFVASS 222
           F +MQE  V P+     NV  AC   G V    ++       +G V +     C+     
Sbjct: 456 FYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACI----- 510

Query: 223 LIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
            +D+ G+ G LE+A K  + M I  +   W +++
Sbjct: 511 -VDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 543


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 208/605 (34%), Positives = 332/605 (54%), Gaps = 28/605 (4%)

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F +M E  V  D      +L     +  +  G+ VH   LK+G D  + V++SLI+MY K
Sbjct: 303 FADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCK 362

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
                 AR VFD M  R++++WNS+I G  QNGL  EA+ +F ++   G++P + ++TS+
Sbjct: 363 LRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSV 422

Query: 290 LSASANL-DALDEGKQAHAVAV-INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           L A+++L + L   KQ H  A+ IN +  D+ + +++I+ YS+   +++AE++F R    
Sbjct: 423 LKAASSLPEGLSLSKQVHVHAIKINNVS-DSFVSTALIDAYSRNRCMKEAEILFERH-NF 480

Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDN--AKQVFNSIILRDVVLWNTLL 405
           D+V WN ++A Y QS      +    + M+ + ER D+     VF +      +     +
Sbjct: 481 DLVAWNAMMAGYTQSHDGHKTLKLFAL-MHKQGERSDDFTLATVFKTCGFLFAINQGKQV 539

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
            AYA   +SG      Y + L  +S  I+        +++ G M+ A+  F    S+ V 
Sbjct: 540 HAYAI--KSG------YDLDL-WVSSGILDM------YVKCGDMSAAQFAF---DSIPV- 580

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
           P+ + WTT+ISG  +N     A   F +M   G+ P   TI     A + + +L  GR I
Sbjct: 581 PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQI 640

Query: 526 HGYLIRHDLCLPTPIV-TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           H   ++ + C   P V TSLVDMYAKCG+I  A  +F       +  +NAM+ G A HG 
Sbjct: 641 HANALKLN-CTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGE 699

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG 644
             E L LFK ++  GI PD +TF  +L+ACSH+GLV+E  +    M  D+ +KP +EH+ 
Sbjct: 700 GKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYS 759

Query: 645 CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
           C+ + L R G + +A  +I +M  +  A +  +LL+ C    +TE  + ++  LL+LEP 
Sbjct: 760 CLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPL 819

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPK 764
           +   YV LSN YAA+ +W+E+   R +MK   ++K+PG SWI++  ++H+FV  DRS+ +
Sbjct: 820 DSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQ 879

Query: 765 TEEIY 769
           TE IY
Sbjct: 880 TELIY 884



 Score =  209 bits (532), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 163/647 (25%), Positives = 294/647 (45%), Gaps = 91/647 (14%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARN--EYVETKLVVFYAKCDALDVASRLFCRL 142
            L+  +   D+  G+  HARIL     F  N   ++   L+  Y+KC +L  A R+F ++
Sbjct: 45  FLRNAITSSDLMLGKCTHARILT----FEENPERFLINNLISMYSKCGSLTYARRVFDKM 100

Query: 143 RVKNVFSWAAIIGL-----NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW 197
             +++ SW +I+        C V   ++A + F  +++D V      L  +LK C   G+
Sbjct: 101 PDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGY 160

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           V    + HGY  K+G DG  FVA +L+++Y K G ++E + +F+ M  R+VV WN M+  
Sbjct: 161 VWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKA 220

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           Y++ G  EEAI +       G+ P  +++  +   S      D+       +  NG +  
Sbjct: 221 YLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISG-----DDSDAGQVKSFANGNDAS 275

Query: 318 NVLGSSII------NFYSKVGLLEDAEVVFSRMVERDI----VTWNLLIASYVQS----- 362
           +V  S II      + Y   G        F+ MVE D+    VT+ L++A+ V+      
Sbjct: 276 SV--SEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLAL 333

Query: 363 GQS------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           GQ              + V++S+++MY K  +   A+ VF+++  RD++ WN+++A  A 
Sbjct: 334 GQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQ 393

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSV------------------------------- 439
            G   EA  LF Q+   G+ P+  +  SV                               
Sbjct: 394 NGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSF 453

Query: 440 -----ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
                I  + RN  M EA+ +F +        +L+ W  +++G TQ+  G++ +  F  M
Sbjct: 454 VSTALIDAYSRNRCMKEAEILFERHNF-----DLVAWNAMMAGYTQSHDGHKTLKLFALM 508

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
            + G +    T+      C  + ++  G+ +H Y I+    L   + + ++DMY KCG++
Sbjct: 509 HKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDM 568

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A+  FD  P  +   +  MISG   +G    A  +F  ++  G+ PD  T   +  A 
Sbjct: 569 SAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKAS 628

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHF--GCVVNLLSRCGNLDEA 659
           S    + +G ++        ++  + + F    +V++ ++CG++D+A
Sbjct: 629 SCLTALEQGRQIHANAL---KLNCTNDPFVGTSLVDMYAKCGSIDDA 672



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 193/380 (50%), Gaps = 21/380 (5%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +Q+H   +K  +    + +V T L+  Y++   +  A  LF R    ++ +W A++    
Sbjct: 437 KQVHVHAIKINN--VSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYT 493

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +     K L  F  M + G   D+F L  V K CG L  +  G+ VH Y +K G+D  ++
Sbjct: 494 QSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLW 553

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V+S ++DMY KCGD+  A+  FD +   + VAW +MI G ++NG  E A  VF +M L G
Sbjct: 554 VSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMG 613

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V P   ++ ++  AS+ L AL++G+Q HA A+      D  +G+S+++ Y+K G ++DA 
Sbjct: 614 VLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAY 673

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
            +F R+   +I  WN ++    Q G+                E +   KQ+ +  I  D 
Sbjct: 674 CLFKRIEMMNITAWNAMLVGLAQHGEGK--------------ETLQLFKQMKSLGIKPDK 719

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFL 457
           V +  +L+A +  G   EA +    M  + GI P I  ++ +     R G + +A+++  
Sbjct: 720 VTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENL-- 777

Query: 458 QMQSLGVQPNLITWTTLISG 477
            ++S+ ++ +   + TL++ 
Sbjct: 778 -IESMSMEASASMYRTLLAA 796


>gi|225427607|ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial [Vitis vinifera]
          Length = 828

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 223/779 (28%), Positives = 370/779 (47%), Gaps = 101/779 (12%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           AV+L  E+      +       ++    +  ++  G+ +H    K G     + ++   L
Sbjct: 57  AVNLFVELMGEGVGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTG--LLSDSFLCNAL 114

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  YAKC  L  +  +F  +  +++ SW +++         +K+L  F +M       DN
Sbjct: 115 IDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADN 174

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF--VASSLIDMYGKCGDLEEARKVF 240
             L   + A   LG + FG+ +HG+ +K+G+         +SLI +Y +C D++ A  +F
Sbjct: 175 VSLTCAVSASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILF 234

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDAL 299
             M  +++V+WN+M+ G   N    EA  + +EM L G V+P  V+V  I+   A L  L
Sbjct: 235 KEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLL 294

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
            EG+  H + +   M LD  + +S+I+ YSK   ++ AE VF  + ERD+V+WN +I+ Y
Sbjct: 295 REGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGY 354

Query: 360 VQSGQSDVV--VASSIVDMYAKC---------------------ERID---------NAK 387
            Q+G S     +   ++  Y++C                     E I          N  
Sbjct: 355 SQNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNP 414

Query: 388 QVFNSIILR---------------------DVVLWNTLLAAYADLGRSGEASRLFYQMQ- 425
              NS++L                      D+V WNT++A     G   EA + F  M+ 
Sbjct: 415 LAVNSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQ 474

Query: 426 -----------------------------LEGIS------PNIISWNSVILGFLRNGQMN 450
                                        L G++       +I   N++I  + R G++ 
Sbjct: 475 DPDVCHDSVALFNVISACGNLELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIE 534

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
            A+ +F          NL +W  +IS  +QN  G  A+  F  +     +P+  TI   L
Sbjct: 535 NARIIF----GFSCNRNLCSWNCMISAFSQNKDGRRALELFCHI---EFEPNEITIVGIL 587

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
           SACT +  LR+G+ IHG++IR  L   + +  +L DMY+ CG +  A ++F  SP + + 
Sbjct: 588 SACTQLGVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSNCGRLDTAFQIFQSSPERSVA 647

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
            +N+MIS +  H    +A+ LF  +++ G  P   TF ++L+ACSH+GLVNEGL  +  M
Sbjct: 648 AWNSMISAFGFHSNGGKAIELFHEMRECGTRPTKSTFISLLSACSHSGLVNEGLWYYSNM 707

Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETEL 690
                V+   EH  C+V++L R G L EA   I  MP  P+  + G+LLS C    + ++
Sbjct: 708 LELFNVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKM 767

Query: 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
              ++E L +LEP+N G Y++LSN Y A+GRW +  ++R I+++KGL+K    S I +G
Sbjct: 768 GREVAELLFELEPENVGYYISLSNMYVAAGRWKDAVELRRIIQDKGLKKPAAYSLIDVG 826



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 165/643 (25%), Positives = 293/643 (45%), Gaps = 106/643 (16%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           T L+  Y++      +  LF  +  ++V  W A+I  +        A+  FVE+  +GV 
Sbjct: 11  TSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVG 70

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
            D+  L  V+ A   +G +  GR +HG   K G     F+ ++LIDMY KCG+L  +  V
Sbjct: 71  LDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSECV 130

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F GM  R++++WNSM+ G   N   ++++  F +M     +   VS+T  +SASA L  L
Sbjct: 131 FGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASALLGEL 190

Query: 300 DEGKQAHAVAVINGME--LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
             G+  H   +  G +    N   +S+I+ YS+   ++ AE++F  M  +DIV+WN ++ 
Sbjct: 191 SFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLD 250

Query: 358 SY---------------------VQSGQSDVVV--------------------------- 369
                                  VQ     VV+                           
Sbjct: 251 GLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMG 310

Query: 370 -----ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
                 +S++DMY+KC+ +  A+ VF +I  RD+V WN +++ Y+  G S EA  LF Q+
Sbjct: 311 LDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQL 370

Query: 425 ----------------------------------QLE-GISPNIISWNSVILGFLRNGQM 449
                                             QL+ G + N ++ NS++L ++  G +
Sbjct: 371 LQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDL 430

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITC 508
                 F  +Q++    +++ W T+++G TQN    EA+  F  M +   +   +  +  
Sbjct: 431 VAC---FSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFN 487

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            +SAC ++  L  G ++HG  ++  +     +  +L+ MY +CG I  A+ +F  S ++ 
Sbjct: 488 VISACGNLELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIFGFSCNRN 547

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           L  +N MIS ++ +     AL LF +++    +P+ IT   IL+AC+  G++  G ++  
Sbjct: 548 LCSWNCMISAFSQNKDGRRALELFCHIE---FEPNEITIVGILSACTQLGVLRHGKQI-- 602

Query: 629 GMFSDHQVKPSMEHFGCVV----NLLSRCGNLDEALRVILTMP 667
                H ++  ++    V     ++ S CG LD A ++  + P
Sbjct: 603 ---HGHVIRSRLQGNSFVSAALEDMYSNCGRLDTAFQIFQSSP 642



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 141/582 (24%), Positives = 265/582 (45%), Gaps = 107/582 (18%)

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
            ++SL+  Y +  D   +  +FD ++ R+V+ WN+MI   V+N     A+ +F E+  EG
Sbjct: 9   TSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEG 68

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           V     ++  ++SAS+++  L +G+  H ++   G+  D+ L +++I+ Y+K G L  +E
Sbjct: 69  VGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSE 128

Query: 339 VVFSRMVERDIVTWNLLI--ASY---------------VQSGQSD------VVVASSI-- 373
            VF  M  RDI++WN ++   +Y                 S Q+D       V AS++  
Sbjct: 129 CVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASALLG 188

Query: 374 -----------------------------VDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                                        + +Y++C  I  A+ +F  +  +D+V WN +
Sbjct: 189 ELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAM 248

Query: 405 LAAYADLGRSGEASRLFYQMQLEG-ISPNIISWNSVI-----LGFLRNGQ---------- 448
           L   A   R  EA  L ++MQL G + P+ ++   +I     L  LR G+          
Sbjct: 249 LDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRRE 308

Query: 449 -------MNEAKDMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQ 492
                   N   DM+ + + +           + +L++W  +ISG +QN    EA   F+
Sbjct: 309 MGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFR 368

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           ++L++  + S +T+   L +C     L+ G +IH + ++         V SL+ MY  CG
Sbjct: 369 QLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCG 428

Query: 553 NIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP----DSITF 607
           ++     +   +S + ++  +N +++G   +G   EAL  F  ++Q   DP    DS+  
Sbjct: 429 DLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQ---DPDVCHDSVAL 485

Query: 608 TNILNACSH-----AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
            N+++AC +     AG    GL L   M SD +V+ ++      + +  RCG ++ A R+
Sbjct: 486 FNVISACGNLELLFAGGSLHGLALKTLMESDIRVQNAL------ITMYGRCGEIENA-RI 538

Query: 663 ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
           I    C+ +      ++S   ++ +   A  +  H ++ EP+
Sbjct: 539 IFGFSCNRNLCSWNCMISAFSQNKDGRRALELFCH-IEFEPN 579



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 15/128 (11%)

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
           P  TSL+  Y++  +   +  +FD    +++ ++NAMI+    +     A+ LF  L  +
Sbjct: 8   PTSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGE 67

Query: 599 GIDPDSITFTNILNACSHAGLVNE-----GLELFVGMFSDHQVKPSMEHFGC--VVNLLS 651
           G+  DS T   +++A SH G + +     G+    G+ SD         F C  ++++ +
Sbjct: 68  GVGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSD--------SFLCNALIDMYA 119

Query: 652 RCGNLDEA 659
           +CG L  +
Sbjct: 120 KCGELSSS 127


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 189/589 (32%), Positives = 319/589 (54%), Gaps = 42/589 (7%)

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR----VFYEM 274
           +A SL+D+  + G L EA    D +  R +     + V  ++     +  +    V   +
Sbjct: 30  IAQSLLDLSSQ-GRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHL 88

Query: 275 TLEGVE-PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVG 332
              G + PT +    ++         + G+   A  V + M + N+   + ++  Y+K+G
Sbjct: 89  KHTGFKRPTTIVANHLIGMY-----FECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLG 143

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA-----------------SSIVD 375
            + +A  +F RM+E+D+V+WN ++ +Y + G  +  +                  + ++ 
Sbjct: 144 DVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLI 203

Query: 376 MYAKCERIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
           +  K + +  AKQV   ++    L ++VL ++++ AY+  G    A  LF +M    +  
Sbjct: 204 LCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEM----LVK 259

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           +I +W +++ G+ + G MN A ++F QM     + N ++W+ LISG  +NS G+EA+ +F
Sbjct: 260 DIHAWTTIVSGYAKWGDMNSASELFHQMP----EKNPVSWSALISGYARNSLGHEALDYF 315

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
            +M++ GI P   T +  L AC  +A+L++G+ +HGYLIR      T +V+SL+DMY+KC
Sbjct: 316 TKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKC 375

Query: 552 GNIHQAKRVFDISPSKE-LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           G +  +  VF +  +K+ + V+N MIS  A +G   +A+ +F ++ + G+ PD ITF  I
Sbjct: 376 GMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVI 435

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L+ACSH+GLV EGL  F  M  DH V P  EH+ C+++LL R G   E +  +  M C P
Sbjct: 436 LSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKP 495

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
           D  +  +LL  C   N  EL   ++E +++L+P +   YV+L++ YA  G+W  V +VR+
Sbjct: 496 DDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRE 555

Query: 731 IMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           +M EK +RK  G SWI +G + H F+A DR HP  EEIY  L  L  H 
Sbjct: 556 LMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLARHT 604



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/489 (23%), Positives = 213/489 (43%), Gaps = 88/489 (17%)

Query: 54  LSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG---- 109
           LS + ++ EA+  L  +  R  ++   I+ +LL+ C   +    G+ +H  +   G    
Sbjct: 37  LSSQGRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRP 96

Query: 110 --------------------------DFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
                                         RN Y    ++  YAK   ++ A +LF R+ 
Sbjct: 97  TTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMM 156

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            K+V SW  I+    + G   +A+  + + +   +  + F    VL  C  L  +   + 
Sbjct: 157 EKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQ 216

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV--------------- 248
           VHG VL  GF   + ++SS++D Y KCG++  AR +FD M+ +++               
Sbjct: 217 VHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGD 276

Query: 249 ----------------VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
                           V+W+++I GY +N L  EA+  F +M   G+ P + + +S L A
Sbjct: 277 MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCA 336

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVT 351
            A++ AL  GKQ H   +      + ++ SS+I+ YSK G+LE +  VF  M  ++D+V 
Sbjct: 337 CASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVV 396

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAA 407
           WN +I++  Q+G                    + A Q+FN ++      D + +  +L+A
Sbjct: 397 WNTMISALAQNGHG------------------EKAMQMFNDMVESGLKPDRITFIVILSA 438

Query: 408 YADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
            +  G   E  R F  M  + G+ P+   +  +I    R G   E  +   +++++  +P
Sbjct: 439 CSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVN---ELENMSCKP 495

Query: 467 NLITWTTLI 475
           +   W+ L+
Sbjct: 496 DDRVWSALL 504



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 139/280 (49%), Gaps = 30/280 (10%)

Query: 53  SLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG--- 109
           + +K+    EA+ L  + +  +       +  +L  CV  +++   +Q+H ++L  G   
Sbjct: 169 AYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLS 228

Query: 110 --------------------------DFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
                                     +   ++ +  T +V  YAK   ++ AS LF ++ 
Sbjct: 229 NLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMP 288

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            KN  SW+A+I    R  L  +AL  F +M + G++P+ +   + L AC ++  +  G+ 
Sbjct: 289 EKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQ 348

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG 262
           VHGY+++  F     V SSLIDMY KCG LE +  VF  M   ++VV WN+MI    QNG
Sbjct: 349 VHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNG 408

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
             E+A+++F +M   G++P R++   ILSA ++   + EG
Sbjct: 409 HGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEG 448


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 196/647 (30%), Positives = 324/647 (50%), Gaps = 82/647 (12%)

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++V SW +++      G+   A    V M   G   +   L +V+ ACG      FG ++
Sbjct: 4   RDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSI 63

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H   +KVG +  V +A++L+DMYGK GD+E + +VFDGM+ +N V+WNS I  ++  G  
Sbjct: 64  HALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFY 123

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
            + +R+F +M+   V P  ++++S+L A   L + D G++ H  ++   M+L        
Sbjct: 124 GDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDL-------- 175

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
                                                    D+ VA+S+VDMYAK   ++
Sbjct: 176 -----------------------------------------DIFVANSLVDMYAKFGSLE 194

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
            A  +F  +  R+VV WN ++A     G   EA RL   MQ  G  PN I+  +V+    
Sbjct: 195 KASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACA 254

Query: 445 RNGQMNEAK----------------------DMFLQMQSLGVQPNL--------ITWTTL 474
           R   +   K                      DM+ +   L +  N+        +++ TL
Sbjct: 255 RMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSEKDDVSYNTL 314

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           I G +Q+    E++L F++M   GI     +   ALSACT+++  ++G+ IH  L+R  L
Sbjct: 315 ILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLL 374

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
                +  SL+D+Y K G +  A ++F+    K++  +N MI GY MHG    A  LF+ 
Sbjct: 375 SGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFEL 434

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           ++  G+D D +++  +L ACSH GLV++G + F  M +   ++P   H+ C+V+LL R G
Sbjct: 435 MKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVA-QNIEPQQMHYACMVDLLGRAG 493

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L +   +I  MP   ++ + G+LL  C      ELA++ +EHL +L+P++ G Y  + N
Sbjct: 494 QLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMIN 553

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI--QIGEELHVFVACD 759
            YA +GRWNE +++R +MK + ++KNP  SW+  Q G +L  F+  D
Sbjct: 554 MYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGD 600



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 159/580 (27%), Positives = 272/580 (46%), Gaps = 40/580 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+        +A   L  M    F +       ++  C  +++   G  IHA  +K G 
Sbjct: 13  VSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGL 72

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               N  +   LV  Y K   ++ + ++F  +  +N  SW + IG     G     L  F
Sbjct: 73  NTMVN--LANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMF 130

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M E  V P +  L ++L A   LG    GR VHGY +K   D  +FVA+SL+DMY K 
Sbjct: 131 RKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKF 190

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G LE+A  +F+ M  RNVV+WN+MI   VQNG   EA R+  +M   G  P  +++ ++L
Sbjct: 191 GSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVL 250

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A A + +L  GKQ HA ++  G+  D  + +++I+ YSK G L  A  +F R  E+D V
Sbjct: 251 PACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDV 309

Query: 351 TWNLLIASYVQSG---QSDVVV-----------ASSIVDMYAKCERID---NAKQVFNSI 393
           ++N LI  Y QS    +S ++            A S +   + C  +    + K++   +
Sbjct: 310 SYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVL 369

Query: 394 ILRDV----VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           + R +     L N+LL  Y   G    AS++F ++       ++ SWN++ILG+  +GQ+
Sbjct: 370 VRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKI----TKKDVASWNTMILGYGMHGQI 425

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           + A ++F  M+  G+  + +++  +++  +     ++   +F +M+   I+P      C 
Sbjct: 426 DIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACM 485

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLP--TPIVTSLVDMYAKCGNIH----QAKRVFDI 563
           +        L     I    IR D+  P  + +  +L+      GNI      A+ +F++
Sbjct: 486 VDLLGRAGQLSKCAEI----IR-DMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFEL 540

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
            P      Y  MI+ YA  G   EA  + K ++ + +  +
Sbjct: 541 KPEHS-GYYTLMINMYAETGRWNEANKIRKLMKSRKVQKN 579


>gi|413952592|gb|AFW85241.1| hypothetical protein ZEAMMB73_384525 [Zea mays]
          Length = 683

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 188/569 (33%), Positives = 309/569 (54%), Gaps = 49/569 (8%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           S+L+  Y + G +EEA+++FD M  RN  +WN+MI G+   G   +A+ VF  M     +
Sbjct: 136 STLLGAYTRRGLMEEAQRLFDEMPHRNASSWNTMITGFFAVGQMRKALNVFAAMP----D 191

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS--SIINFYSKVGLLEDAE 338
               S+++++S       L E         +  M++D  +G+  ++I  Y + G + DA 
Sbjct: 192 KDSASLSAMVSGFIRNGRLHEADDL-LTKRLTVMDMDKAVGAFNTLIAAYGQTGRVTDAR 250

Query: 339 VVFS-------------RMV-ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
            +FS             RMV ER++V+WN ++  Y+++G                   + 
Sbjct: 251 RLFSMIPKTQNQHKGHKRMVFERNVVSWNSMMMCYIRTGD------------------VC 292

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
           +A+ +F+ +  +D+V WNT++A Y       EA +LF+++      P+ ++WN +I GF 
Sbjct: 293 SARALFDEMPHKDLVSWNTMIAGYTQASEMEEAEKLFWEVP----DPDAVTWNLMIRGFT 348

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
           + G +  A+  F +M     + + ITW T+ISG  QN   +  I  FQ MLE G +P   
Sbjct: 349 QKGDVEHARGFFDRMP----ERSTITWNTMISGYEQNEDYDSTIKLFQRMLEVGERPDHH 404

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DI 563
           T++  L+AC  +A LR G  +H  LI       T    +L+ MY++CG +  AK +F  +
Sbjct: 405 TLSSVLAACASLAMLRLGAQLH-QLIEKSFLPDTATNNALMTMYSRCGELISAKAIFGHM 463

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
              +++  +NA+I GY   G A EAL LF+ ++   + P  ITF ++L+AC +AGLV+EG
Sbjct: 464 HTQRDIVSWNALIGGYEQQGNATEALRLFEEMRSAKVMPTHITFISLLSACGNAGLVSEG 523

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
             +F  M  D+ +  S+EH+  +VNL+ R G L++AL +I +MP  PD  + G+ L  C 
Sbjct: 524 RVVFHTMVHDYGLAASVEHYAALVNLIGRHGQLEDALELIKSMPIAPDRAVWGAFLGACT 583

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
                 LAE  +  L +++PD+   YV + N +A  GRW   S VR+ M+  G+ K+PG 
Sbjct: 584 AKKNEPLAEMAANALSKIDPDSSAPYVLMHNLHAHEGRWGSASLVREDMERLGIHKHPGY 643

Query: 744 SWIQIGEELHVFVACDRSHPKTEEIYATL 772
           SWI + +++HVF++ D SHP T EI++ L
Sbjct: 644 SWIDLHDKVHVFISGDTSHPLTHEIFSVL 672



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 206/474 (43%), Gaps = 84/474 (17%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR--VSV 286
           + G    AR++FD + AR+VV WNS++   +  G +  A R F++       P R  +S 
Sbjct: 48  RRGRFSAARRLFDALPARSVVTWNSLLAA-LSRGSDVRAARCFFDAM-----PVRDIISW 101

Query: 287 TSILSASANLDALDEGKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
            ++LSA A   +L     A A  +   M + D V  S+++  Y++ GL+E+A+ +F  M 
Sbjct: 102 NTLLSAYAR--SLQPNDLAAARRLFYEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMP 159

Query: 346 ERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQVFNS 392
            R+  +WN +I  +   GQ              D    S++V  + +  R+  A  +   
Sbjct: 160 HRNASSWNTMITGFFAVGQMRKALNVFAAMPDKDSASLSAMVSGFIRNGRLHEADDLLTK 219

Query: 393 IIL-----RDVVLWNTLLAAYADLGRSGEASRLF-----YQMQLEG-----ISPNIISWN 437
            +      + V  +NTL+AAY   GR  +A RLF      Q Q +G        N++SWN
Sbjct: 220 RLTVMDMDKAVGAFNTLIAAYGQTGRVTDARRLFSMIPKTQNQHKGHKRMVFERNVVSWN 279

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           S+++ ++R G +  A+ +F +M       +L++W T+I+G TQ S   EA   F E+   
Sbjct: 280 SMMMCYIRTGDVCSARALFDEMP----HKDLVSWNTMIAGYTQASEMEEAEKLFWEV--- 332

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
              P    +T  L                                 ++  + + G++  A
Sbjct: 333 ---PDPDAVTWNL---------------------------------MIRGFTQKGDVEHA 356

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           +  FD  P +    +N MISGY  +      + LF+ + + G  PD  T +++L AC+  
Sbjct: 357 RGFFDRMPERSTITWNTMISGYEQNEDYDSTIKLFQRMLEVGERPDHHTLSSVLAACASL 416

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
            ++  G +L      +    P       ++ + SRCG L  A  +   M    D
Sbjct: 417 AMLRLGAQLH--QLIEKSFLPDTATNNALMTMYSRCGELISAKAIFGHMHTQRD 468



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 180/433 (41%), Gaps = 81/433 (18%)

Query: 122 LVVFYAKC---DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
           L+  YA+    + L  A RLF  +  ++  SW+ ++G   R GL E+A   F EM     
Sbjct: 104 LLSAYARSLQPNDLAAARRLFYEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMPHRNA 163

Query: 179 SPDNFVLP------------NVLKACGALGWVGFGRAVHGYVLK---------------- 210
           S  N ++             NV  A            V G++                  
Sbjct: 164 SSWNTMITGFFAVGQMRKALNVFAAMPDKDSASLSAMVSGFIRNGRLHEADDLLTKRLTV 223

Query: 211 VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM--------------IARNVVAWNSMIV 256
           +  D  V   ++LI  YG+ G + +AR++F  +                RNVV+WNSM++
Sbjct: 224 MDMDKAVGAFNTLIAAYGQTGRVTDARRLFSMIPKTQNQHKGHKRMVFERNVVSWNSMMM 283

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
            Y++ G    A  +F EM  + +    VS  ++++       ++E ++          + 
Sbjct: 284 CYIRTGDVCSARALFDEMPHKDL----VSWNTMIAGYTQASEMEEAEK----LFWEVPDP 335

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA------ 370
           D V  + +I  +++ G +E A   F RM ER  +TWN +I+ Y Q+   D  +       
Sbjct: 336 DAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTITWNTMISGYEQNEDYDSTIKLFQRML 395

Query: 371 --------SSIVDMYAKCERIDNAK------QVFNSIILRDVVLWNTLLAAYADLGRSGE 416
                    ++  + A C  +   +      Q+     L D    N L+  Y+  G    
Sbjct: 396 EVGERPDHHTLSSVLAACASLAMLRLGAQLHQLIEKSFLPDTATNNALMTMYSRCGELIS 455

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           A  +F  M  +    +I+SWN++I G+ + G   EA  +F +M+S  V P  IT+ +L+S
Sbjct: 456 AKAIFGHMHTQ---RDIVSWNALIGGYEQQGNATEALRLFEEMRSAKVMPTHITFISLLS 512

Query: 477 GLTQNSCGNEAIL 489
                +CGN  ++
Sbjct: 513 -----ACGNAGLV 520



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 169/398 (42%), Gaps = 75/398 (18%)

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQV 389
           + G    A  +F  +  R +VTWN L+A+   S  SDV  A        +C         
Sbjct: 48  RRGRFSAARRLFDALPARSVVTWNSLLAAL--SRGSDVRAA--------RC--------F 89

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGE---ASRLFYQM-QLEGIS--------------- 430
           F+++ +RD++ WNTLL+AYA   +  +   A RLFY+M Q + +S               
Sbjct: 90  FDAMPVRDIISWNTLLSAYARSLQPNDLAAARRLFYEMPQRDAVSWSTLLGAYTRRGLME 149

Query: 431 -----------PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
                       N  SWN++I GF   GQM +A ++F  M       +  + + ++SG  
Sbjct: 150 EAQRLFDEMPHRNASSWNTMITGFFAVGQMRKALNVFAAMP----DKDSASLSAMVSGFI 205

Query: 480 QNSCGNEA-ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR------- 531
           +N   +EA  L  + +    +  +       ++A      + + R +   + +       
Sbjct: 206 RNGRLHEADDLLTKRLTVMDMDKAVGAFNTLIAAYGQTGRVTDARRLFSMIPKTQNQHKG 265

Query: 532 -HDLCLPTPIVT--SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
              +     +V+  S++  Y + G++  A+ +FD  P K+L  +N MI+GY       EA
Sbjct: 266 HKRMVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPHKDLVSWNTMIAGYTQASEMEEA 325

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
             LF  +     DPD++T+  ++   +  G V      F     D   + S   +  +++
Sbjct: 326 EKLFWEVP----DPDAVTWNLMIRGFTQKGDVEHARGFF-----DRMPERSTITWNTMIS 376

Query: 649 LLSRCGNLDEALRV---ILTMPCDPDAHIIGSLLSTCV 683
              +  + D  +++   +L +   PD H + S+L+ C 
Sbjct: 377 GYEQNEDYDSTIKLFQRMLEVGERPDHHTLSSVLAACA 414



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 109/253 (43%), Gaps = 15/253 (5%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  C     +  G Q+H  I K+   F  +      L+  Y++C  L  A  +F  +  
Sbjct: 409 VLAACASLAMLRLGAQLHQLIEKS---FLPDTATNNALMTMYSRCGELISAKAIFGHMHT 465

Query: 145 -KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            +++ SW A+IG   + G + +AL  F EM+   V P +    ++L ACG  G V  GR 
Sbjct: 466 QRDIVSWNALIGGYEQQGNATEALRLFEEMRSAKVMPTHITFISLLSACGNAGLVSEGRV 525

Query: 204 V-HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQN 261
           V H  V   G    V   ++L+++ G+ G LE+A ++   M IA +   W + + G    
Sbjct: 526 VFHTMVHDYGLAASVEHYAALVNLIGRHGQLEDALELIKSMPIAPDRAVWGAFL-GACTA 584

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME---LDN 318
             NE       EM    +       ++      NL A  EG+   A  V   ME   +  
Sbjct: 585 KKNEP----LAEMAANALSKIDPDSSAPYVLMHNLHA-HEGRWGSASLVREDMERLGIHK 639

Query: 319 VLGSSIINFYSKV 331
             G S I+ + KV
Sbjct: 640 HPGYSWIDLHDKV 652


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  332 bits (852), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 208/723 (28%), Positives = 340/723 (47%), Gaps = 137/723 (18%)

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
           + P  +  C  +  V   + +H  +L  G    + + S LI  Y   G L  A  +    
Sbjct: 30  ITPPFIHKCKTISQV---KLIHQKLLSFGIL-TLNLTSHLISTYISLGCLSHAVSLLRRF 85

Query: 244 IARN--VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
              +  V  WNS+I  Y  NG   + +  F  M      P   +   +  A   + ++  
Sbjct: 86  PPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRC 145

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           G  +HA++ + G   +  +G++++  YS+ G L DA  VF  M   D+V+WN +I SY +
Sbjct: 146 GDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAK 205

Query: 362 SGQ-----------------------------------------------------SDVV 368
            G+                                                      ++ 
Sbjct: 206 LGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMF 265

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE- 427
           V + +VDMYAK   +D A  VF+++ ++DVV WN ++A Y+ +GR  +A RLF QMQ E 
Sbjct: 266 VGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEK 325

Query: 428 ----------------------------------GISPNIISWNSVILG----------- 442
                                             GI PN ++  SV+ G           
Sbjct: 326 IKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGK 385

Query: 443 ------------FLRNGQ------MNEAKDMFLQMQSLGV-----------QPNLITWTT 473
                         +NG       +N+  DM+ + + + +           + +++TWT 
Sbjct: 386 EIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTV 445

Query: 474 LISGLTQNSCGNEAILFFQEMLETG--IKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           +I G +Q+   N+A+    EM E     +P+  TI+CAL AC  +A+L  G+ IH Y +R
Sbjct: 446 MIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALR 505

Query: 532 HDL-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           +    +P  +   L+DMYAKCG+I  A+ VFD    K    + ++++GY MHG   EAL 
Sbjct: 506 NQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALG 565

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           +F+ +++ G   D +T   +L ACSH+G++++G+E F  M +D  V P  EH+ C+V+LL
Sbjct: 566 IFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLL 625

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
            R G L+ ALR+I  MP +P   +  +LLS C    + EL EY ++ + +L  +N G+Y 
Sbjct: 626 GRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYT 685

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            LSN YA +GRW +V+++R +M+ KG++K PGCSW++  +    F   D++HP  +EIY 
Sbjct: 686 LLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQ 745

Query: 771 TLA 773
            L+
Sbjct: 746 VLS 748


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  332 bits (852), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 194/590 (32%), Positives = 321/590 (54%), Gaps = 53/590 (8%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V  A++ I    + G++E AR  FD M  R   ++N++I GY +N L + A+ +F+ M  
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRM-- 74

Query: 277 EGVEPTR-VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
               P+R +   + L A  +L        A A+A I  +    V  +S++  Y + GLL 
Sbjct: 75  ----PSRDLGSYNALIAGLSLRRHTLPDAAAALASIP-LPPSVVSFTSLLRGYVRHGLLA 129

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCER 382
           DA  +F +M ER+ VT+ +L+  ++ +G+              DVV  ++++  Y +  R
Sbjct: 130 DAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGR 189

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG 442
           I  A+ +F+ +  R+VV W  +++ YA  G+   A +LF  M       N +SW ++++G
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMP----DRNEVSWTAMLVG 245

Query: 443 FLRNGQMNEAKDMFLQMQSLGV-----------QPNLI----------------TWTTLI 475
           +++ G + +A+D+F  M    V           Q  ++                TW+ +I
Sbjct: 246 YIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMI 305

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
               QN    EA+  F+EML  GI+P+ T+    L+ C  +A+   GR +H  ++R    
Sbjct: 306 KVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFD 365

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
                V++L+ MY KCGN+ +AKRVF++   K++ ++N+MI+GYA HGL  EAL +F +L
Sbjct: 366 TDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDL 425

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           +   + PD IT+  +L ACS+ G V EG E+F  M  +  ++    H+ C+V+LL R G 
Sbjct: 426 RLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGL 485

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           +DEAL +I  MP +PDA I G+L+  C      E+AE  ++ LL+LEP + G YV LS+ 
Sbjct: 486 VDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHI 545

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD-RSHPK 764
           Y ++GRW + S +R  +  + L K+PGCSWI+  + +H+F + D  SHP+
Sbjct: 546 YTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPE 595



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 136/239 (56%), Gaps = 2/239 (0%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++V + +   +D A  +F R+  ++  +W+A+I +  +     +AL  F EM   G+ P+
Sbjct: 273 MMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPN 332

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
                ++L  C AL    +GR +H  +L+  FD  VF  S+LI MY KCG+L++A++VF+
Sbjct: 333 YTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFN 392

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
               ++VV WNSMI GY Q+GL EEA+ +F ++ L  + P  ++   +L+A +    + E
Sbjct: 393 MFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKE 452

Query: 302 GKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
           G++  +++ + + + L     S +++   + GL+++A  + + M VE D + W  L+ +
Sbjct: 453 GREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGA 511



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 152/361 (42%), Gaps = 80/361 (22%)

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           D  V   ++++  Y + G + EAR +FD M  RNVV+W +MI GY QNG      +V   
Sbjct: 171 DKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNG------KVILA 224

Query: 274 MTLEGVEPTR--VSVTSIL----SASANLDALD--EGKQAHAVAVINGMELDNVLGSSII 325
             L  V P R  VS T++L     A    DA D       H VA  N M +         
Sbjct: 225 RKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVG-------- 276

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ------------------------ 361
             + + G+++ A+ +F RM  RD  TW+ +I  Y Q                        
Sbjct: 277 --FGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYT 334

Query: 362 ----------------------------SGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
                                       S  +DV   S+++ MY KC  +D AK+VFN  
Sbjct: 335 SFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMF 394

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
             +DVV+WN+++  YA  G   EA  +F  ++L  ++P+ I++  V+      G++ E +
Sbjct: 395 EPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGR 454

Query: 454 DMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           ++F  M  +  ++     ++ ++  L +    +EA+     M    ++P        + A
Sbjct: 455 EIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNM---PVEPDAIIWGALMGA 511

Query: 513 C 513
           C
Sbjct: 512 C 512



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 120/497 (24%), Positives = 204/497 (41%), Gaps = 76/497 (15%)

Query: 16  HTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNF 75
           HT P     L+   L     S  S+ SL + Y        +   + +A+ L  +M  RN 
Sbjct: 94  HTLPDAAAALASIPLPP---SVVSFTSLLRGYV-------RHGLLADAIRLFHQMPERNH 143

Query: 76  QIGPEIYGELLQGCVYKRDMYTGQQIHARIL----KNGDFFARNEYVETKLVVFYAKCDA 131
                + G  L           G+   AR L     + D  AR     T ++  Y +   
Sbjct: 144 VTYTVLLGGFLDA---------GRVNEARKLFDEMPDKDVVAR-----TAMLSGYCQAGR 189

Query: 132 LDVASRLFCRLRVKNVFSWAAII---GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188
           +  A  LF  +  +NV SW A+I     N +V L+ K                  V+P+ 
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFE---------------VMPDR 234

Query: 189 LKACGALGWVGFGRAVHGYVLKVGF----DGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
            +       VG+ +A H    +  F    D  V   ++++  +G+ G ++ A+ +F+ M 
Sbjct: 235 NEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMC 294

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
           AR+   W++MI  Y QN    EA+  F EM   G+ P   S  SIL+  A L   D G++
Sbjct: 295 ARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRE 354

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            HA  +    + D    S++I  Y K G L+ A+ VF+    +D+V WN +I  Y Q G 
Sbjct: 355 LHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGL 414

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRL 420
                              + A  +F+ + L     D + +  +L A +  G+  E   +
Sbjct: 415 G------------------EEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREI 456

Query: 421 FYQMQL-EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           F  M +   I      ++ ++    R G ++EA D+   + ++ V+P+ I W  L+    
Sbjct: 457 FNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDL---INNMPVEPDAIIWGALMGACR 513

Query: 480 QNSCGNEAILFFQEMLE 496
            +     A +  +++LE
Sbjct: 514 MHKNAEIAEVAAKKLLE 530



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 118/262 (45%), Gaps = 19/262 (7%)

Query: 35  ESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRD 94
             D ++ ++ K Y        + + + EA+    EM CR  +     +  +L  C     
Sbjct: 296 RDDGTWSAMIKVY-------EQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALAT 348

Query: 95  MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII 154
              G+++HA +L+    F  + +  + L+  Y KC  LD A R+F     K+V  W ++I
Sbjct: 349 ADYGRELHAAMLRCS--FDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMI 406

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD 214
               + GL E+AL  F +++   ++PD      VL AC   G V  GR +      +G +
Sbjct: 407 TGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFN---SMGMN 463

Query: 215 GCVFVA----SSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIR 269
             + +     S ++D+ G+ G ++EA  + + M +  + + W +++ G  +   N E   
Sbjct: 464 SSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALM-GACRMHKNAEIAE 522

Query: 270 VFYEMTLEGVEPTRVSVTSILS 291
           V  +  LE +EP       +LS
Sbjct: 523 VAAKKLLE-LEPGSAGPYVLLS 543


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  332 bits (852), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 192/583 (32%), Positives = 306/583 (52%), Gaps = 36/583 (6%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW--NSMIVGYVQN 261
           +H  +LK G       AS LI  Y     L  +R++F          +  N+++  Y  N
Sbjct: 77  LHAQLLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALN 136

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVT-SILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            L   A+ +F  M      P R S T S L  + +   L   +  H+  V  G   D  +
Sbjct: 137 ALPHAAVSLFSAM------PQRDSFTYSFLIKALSSSGLTPLRAVHSHVVKLGSIEDTYV 190

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G+++I+ YSK G   DA  VF  M  RD V+WN  +A+ V+ G+                
Sbjct: 191 GNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGE---------------- 234

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             + +A+++F+ +  +D V WNT+L  Y   G+  +A  LF  M       N++SW++V+
Sbjct: 235 --VASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPER----NVVSWSTVV 288

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
            G+ + G +  A+ +F +M +     NL+TWT ++S   QN    EA   F +M E  ++
Sbjct: 289 SGYCKKGDIEMARVIFDKMPT----KNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVE 344

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
                +   L+AC +  SL  G+ IH Y+    L   T +  +++DM+ KCG +++A  V
Sbjct: 345 LDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYV 404

Query: 561 FDISPSKELPV-YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           FD   +++  V +N +I G+AMHG   +AL  F  ++ +G  PD++T  N+L+AC+H G 
Sbjct: 405 FDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGF 464

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           V EG + F  M  D+ + P +EH+GC+++LL R G ++EA+ +I +MP DP+  I GSLL
Sbjct: 465 VEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLL 524

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           S C      E AE     L +L+P N GNY  LSN YA +G+W+++++ R  MK  G +K
Sbjct: 525 SACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQK 584

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
           + G SWI++ E  H F   DR H  +++I   +  L  HV+ V
Sbjct: 585 SAGSSWIELDEAFHEFTVGDRKHSDSDQISEMVDRLSSHVKDV 627



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/472 (25%), Positives = 204/472 (43%), Gaps = 76/472 (16%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           Q++HA++LK+G     +    +KL+  YA    L  + R+F         ++     L  
Sbjct: 75  QELHAQLLKHG--LHLDPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRA 132

Query: 159 RV--GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
                L   A+  F  M +     D+F    ++KA  + G     RAVH +V+K+G    
Sbjct: 133 YALNALPHAAVSLFSAMPQR----DSFTYSFLIKALSSSGLTPL-RAVHSHVVKLGSIED 187

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            +V ++LID Y K G   +A KVF+ M  R+ V+WNS +   V+ G    A R+F EM  
Sbjct: 188 TYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMP- 246

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLE 335
              +   VS  ++L           GK   A  +   M   NV+  S++++ Y K G +E
Sbjct: 247 ---DKDTVSWNTVLDGYTK-----AGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIE 298

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVV---------- 368
            A V+F +M  +++VTW +++++  Q+G                 + DV           
Sbjct: 299 MARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACA 358

Query: 369 -------------------------VASSIVDMYAKCERIDNAKQVFNS-IILRDVVLWN 402
                                    V ++++DM+ KC  ++ A  VF++ I  +D V WN
Sbjct: 359 ESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWN 418

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-S 461
           T++  +A  G   +A   F QM+L+G  P+ ++  +V+      G + E +  F  M+  
Sbjct: 419 TIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERD 478

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            G+ P +  +  +I  L +     EA+   + M      P+       LSAC
Sbjct: 479 YGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSM---PWDPNEVIWGSLLSAC 527



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 25/232 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+ ++   + EA  L T+MK    ++       +L  C     +  G++IH R ++   
Sbjct: 319 VSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIH-RYVRTRQ 377

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLF-CRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
              R+ +V   ++  + KC  ++ A  +F   +  K+  SW  IIG     G  +KAL  
Sbjct: 378 -LGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDF 436

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-------HGYVLKVGFDGCVFVASS 222
           F +M+  G  PD   + NVL AC  +G+V  GR         +G V ++   GC      
Sbjct: 437 FAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGC------ 490

Query: 223 LIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI--------VGYVQNGLNE 265
           +ID+ G+ G +EEA  +   M    N V W S++        V Y +  +NE
Sbjct: 491 MIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNE 542



 Score = 47.0 bits (110), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 101/226 (44%), Gaps = 22/226 (9%)

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY--NAMI 576
           L + + +H  L++H L L     + L+  YA    +  ++R+F   P+ +   +  N ++
Sbjct: 71  LHHVQELHAQLLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLL 130

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
             YA++ L   A++LF  + Q+    DS T++ ++ A S +GL        +     H V
Sbjct: 131 RAYALNALPHAAVSLFSAMPQR----DSFTYSFLIKALSSSGLTP------LRAVHSHVV 180

Query: 637 K-PSMEHF---GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
           K  S+E       +++  S+ G   +A +V   MP   D     S ++  V+  E   A 
Sbjct: 181 KLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMP-RRDTVSWNSAMAAMVRQGEVASAR 239

Query: 693 YISEHLLQLEPDNPG-NYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
            + + +    PD    ++  + + Y  +G+  +  ++   M E+ +
Sbjct: 240 RMFDEM----PDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNV 281


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  332 bits (852), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 180/505 (35%), Positives = 283/505 (56%), Gaps = 63/505 (12%)

Query: 322 SSIINFYSKVGLLEDAEVVFSRM----VERDIVTWNLLIA-----SYVQSGQ-------- 364
           ++II  YS+    +DA +++S M    V  D  T+  L+      S++Q G+        
Sbjct: 88  NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147

Query: 365 ----SDVVVASSIVDMYAKCERIDNAKQVFNSIIL--RDVVLWNTLLAAYADLGRSGEAS 418
               +DV V + ++ +YAKC R+ +A+ VF  + L  R +V W  +++AYA  G   EA 
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207

Query: 419 RLFYQMQLEGISPNIISWNSVILGFL---------------------------------- 444
            +F  M+   + P+ ++  SV+  F                                   
Sbjct: 208 EIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267

Query: 445 -RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            + GQ+  AK +F +M+S    PNLI W  +ISG  +N    EAI  F EM+   ++P T
Sbjct: 268 AKCGQVATAKILFDKMKS----PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 323

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            +IT A+SAC  V SL   R+++ Y+ R D      I ++L+DM+AKCG++  A+ VFD 
Sbjct: 324 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR 383

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
           +  +++ V++AMI GY +HG A EA++L++ +++ G+ P+ +TF  +L AC+H+G+V EG
Sbjct: 384 TLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
              F  + +DH++ P  +H+ CV++LL R G+LD+A  VI  MP  P   + G+LLS C 
Sbjct: 444 W-WFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACK 502

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
           K    EL EY ++ L  ++P N G+YV LSN YAA+  W+ V++VR  MKEKGL K+ GC
Sbjct: 503 KHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGC 562

Query: 744 SWIQIGEELHVFVACDRSHPKTEEI 768
           SW+++   L  F   D+SHP+ EEI
Sbjct: 563 SWVEVRGRLEAFRVGDKSHPRYEEI 587



 Score =  215 bits (548), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 148/536 (27%), Positives = 249/536 (46%), Gaps = 70/536 (13%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
            Y  L+    +K  +   +QIHAR+L  G  F+   ++ TKL+   +    +  A ++F 
Sbjct: 23  FYASLIDSATHKAQL---KQIHARLLVLGLQFS--GFLITKLIHASSSFGDITFARQVFD 77

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
            L    +F W AII    R    + AL+ +  MQ   VSPD+F  P++LKAC  L  +  
Sbjct: 78  DLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQM 137

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG--MIARNVVAWNSMIVGY 258
           GR VH  V ++GFD  VFV + LI +Y KC  L  AR VF+G  +  R +V+W +++  Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            QNG   EA+ +F  M    V+P  V++ S+L+A   L  L +G+  HA  V  G+E++ 
Sbjct: 198 AQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
            L  S+   Y+K G +  A+++F +M   +++ WN +I+ Y ++G               
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317

Query: 364 -------------------------------------QSDVVVASSIVDMYAKCERIDNA 386
                                                + DV ++S+++DM+AKC  ++ A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
           + VF+  + RDVV+W+ ++  Y   GR+ EA  L+  M+  G+ PN +++  +++    +
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G + E    F  M    + P    +  +I  L +    ++A    + M    ++P  T  
Sbjct: 438 GMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCM---PVQPGVTVW 494

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
              LSAC     +  G      L   D         S    Y +  N++ A R++D
Sbjct: 495 GALLSACKKHRHVELGEYAAQQLFSID--------PSNTGHYVQLSNLYAAARLWD 542



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 222/471 (47%), Gaps = 23/471 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I   S+    ++A+ + + M+          +  LL+ C     +  G+ +HA++ + G 
Sbjct: 91  IRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLG- 149

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRV--KNVFSWAAIIGLNCRVGLSEKALI 168
            F  + +V+  L+  YAKC  L  A  +F  L +  + + SW AI+    + G   +AL 
Sbjct: 150 -FDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALE 208

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F  M++  V PD   L +VL A   L  +  GR++H  V+K+G +    +  SL  MY 
Sbjct: 209 IFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYA 268

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG +  A+ +FD M + N++ WN+MI GY +NG   EAI +F+EM  + V P  +S+TS
Sbjct: 269 KCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITS 328

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
            +SA A + +L++ +  +     +    D  + S++I+ ++K G +E A +VF R ++RD
Sbjct: 329 AISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRD 388

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           +V W+ +I  Y   G+     A   + +Y   ER          +   DV     L+A  
Sbjct: 389 VVVWSAMIVGYGLHGR-----AREAISLYRAMER--------GGVHPNDVTFLGLLMACN 435

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
              G   E    F  M    I+P    +  VI    R G +++A ++   ++ + VQP +
Sbjct: 436 HS-GMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEV---IKCMPVQPGV 491

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
             W  L+S   ++          Q++    I PS T     LS     A L
Sbjct: 492 TVWGALLSACKKHRHVELGEYAAQQLFS--IDPSNTGHYVQLSNLYAAARL 540


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 195/576 (33%), Positives = 290/576 (50%), Gaps = 55/576 (9%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R VH  ++         +   L+  Y    D+  ARKVFD +  RNV+  N MI  YV N
Sbjct: 60  RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNN 119

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G   E I+VF  M    V+P   +   +L A +    +  GK+ H  A            
Sbjct: 120 GFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSA------------ 167

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
                  +KVGL                               S + V + +V MY KC 
Sbjct: 168 -------TKVGL------------------------------SSTLFVGNGLVSMYGKCG 190

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +  A+ V + +  RDVV WN+L+A YA   R  +A  +  +M+   IS +  +  S++ 
Sbjct: 191 FLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP 250

Query: 442 GFLRNGQMN--EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
                   N    KDMF +M     + +L++W  +I    +N+   EA+  +  M   G 
Sbjct: 251 AVSNTTTENVMYVKDMFFKMG----KKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGF 306

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           +P   +IT  L AC D ++L  G+ IHGY+ R  L     +  +L+DMYAKCG + +A+ 
Sbjct: 307 EPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARD 366

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VF+   S+++  + AMIS Y   G   +A+ALF  +Q  G+ PDSI F   L ACSHAGL
Sbjct: 367 VFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGL 426

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           + EG   F  M   +++ P +EH  C+V+LL R G + EA + I  MP +P+  + G+LL
Sbjct: 427 LEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALL 486

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
             C   + T++    ++ L QL P+  G YV LSN YA +GRW EV+ +R+IMK KGL+K
Sbjct: 487 GACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKK 546

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           NPG S +++   +H F+  DRSHP++ EIY  L +L
Sbjct: 547 NPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVL 582



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 216/473 (45%), Gaps = 54/473 (11%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D+ T + +H+RI+        N  +  KL+  YA    +  A ++F  +  +NV     +
Sbjct: 55  DLKTLRTVHSRIISED--LRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVM 112

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I      G   + +  F  M    V PD++  P VLKAC   G +  G+ +HG   KVG 
Sbjct: 113 IRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGL 172

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
              +FV + L+ MYGKCG L EAR V D M  R+VV+WNS++ GY QN   ++A+ V  E
Sbjct: 173 SSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCRE 232

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M     E  ++S              D G  A  +  ++    +NV+       Y K   
Sbjct: 233 M-----ESVKIS-------------HDAGTMASLLPAVSNTTTENVM-------YVK--- 264

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
                 +F +M ++ +V+WN++I  Y+++      +    V++Y+  E        F   
Sbjct: 265 -----DMFFKMGKKSLVSWNVMIGVYMKNA-----MPVEAVELYSGME-----ADGFEP- 308

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
              D V   ++L A  D        ++   ++ + + PN++  N++I  + + G ++ A+
Sbjct: 309 ---DAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRAR 365

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           D+F  M+S  V    ++WT +IS    +  G +A+  F +M ++G+ P +      L+AC
Sbjct: 366 DVFENMKSRDV----VSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAAC 421

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPT-PIVTSLVDMYAKCGNIHQAKRVFDISP 565
           +    L  GR+    +  H    P    +  +VD+  + G + +A +     P
Sbjct: 422 SHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMP 474



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 12/200 (6%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EAV+L + M+   F+        +L  C     +  G++IH  I +       N  +E  
Sbjct: 293 EAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKK--LIPNLLLENA 350

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  YAKC  LD A  +F  ++ ++V SW A+I      G    A+  F +MQ+ G+ PD
Sbjct: 351 LIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPD 410

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA-----SSLIDMYGKCGDLEEA 236
           +      L AC   G +  GR+      K+  D           + ++D+ G+ G ++EA
Sbjct: 411 SIAFVTTLAACSHAGLLEEGRS----CFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 466

Query: 237 RKVFDGM-IARNVVAWNSMI 255
            K    M +  N   W +++
Sbjct: 467 YKFIQEMPMEPNERVWGALL 486



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 1/148 (0%)

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           L+  R +H  +I  DL   + +   L+  YA   ++  A++VFD  P + + + N MI  
Sbjct: 56  LKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRS 115

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           Y  +G   E + +F  +    + PD  TF  +L ACS +G +  G ++  G  +   +  
Sbjct: 116 YVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIH-GSATKVGLSS 174

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTM 666
           ++     +V++  +CG L EA  V+  M
Sbjct: 175 TLFVGNGLVSMYGKCGFLSEARLVLDEM 202


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 196/632 (31%), Positives = 323/632 (51%), Gaps = 89/632 (14%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           +E+A ++FD M   +   WN MI G+   GL  EA++ +  M   GV+    +   ++ +
Sbjct: 80  MEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKS 139

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A + +L+EGK+ HA+ +  G   D  + +S+I+ Y K+G   DAE VF  M ERDIV+W
Sbjct: 140 VAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSW 199

Query: 353 NLLIASYVQSGQS----------------------------------------------- 365
           N +I+ Y+  G                                                 
Sbjct: 200 NSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVR 259

Query: 366 ------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
                 DV+V +SI+DMY+K   +  A+++FN +I R++V WN ++  YA  GR  +A  
Sbjct: 260 SRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFL 319

Query: 420 LFYQM-QLEGISPNIISW-----NSVIL------------GFLRN--------------G 447
            F +M +  G+ P++I+       S IL            GFL +              G
Sbjct: 320 CFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECG 379

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
           Q+  A+ +F +M     + N+I+W ++I+   QN     A+  FQE+ ++ + P +TTI 
Sbjct: 380 QLKSAEVIFDRM----AEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIA 435

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
             L A  +  SL  GR IH Y+++      T I+ SLV MYA CG++  A++ F+    K
Sbjct: 436 SILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLK 495

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           ++  +N++I  YA+HG    ++ LF  +    ++P+  TF ++L ACS +G+V+EG E F
Sbjct: 496 DVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYF 555

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             M  ++ + P +EH+GC+++L+ R GN   A R +  MP  P A I GSLL+      +
Sbjct: 556 ESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKD 615

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
             +AE+ +E + ++E DN G YV L N YA +GRW +V++++ +M+ KG+ +    S ++
Sbjct: 616 ITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVE 675

Query: 748 IGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
              + HVF   DRSH  T +IY  L ++   V
Sbjct: 676 AKGKSHVFTNGDRSHVATNKIYEVLDVVSRMV 707



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 149/563 (26%), Positives = 267/563 (47%), Gaps = 69/563 (12%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EAV   + M     +     Y  +++       +  G++IHA ++K G  F  + YV   
Sbjct: 113 EAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLG--FVSDVYVCNS 170

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  Y K      A ++F  +  +++ SW ++I     +G    +L+ F EM + G  PD
Sbjct: 171 LISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPD 230

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD-GCVFVASSLIDMYGKCGDLEEARKVF 240
            F   + L AC  +     G+ +H + ++   + G V V +S++DMY K G++  A ++F
Sbjct: 231 RFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIF 290

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDAL 299
           +GMI RN+VAWN MI  Y +NG   +A   F +M+ + G++P  ++  ++L ASA L   
Sbjct: 291 NGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAIL--- 347

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
            EG+  H  A+  G     VL +++I+ Y + G L+ AEV+F RM E+++++WN +IA+Y
Sbjct: 348 -EGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAY 406

Query: 360 VQSGQ----------------------------------------------------SDV 367
           VQ+G+                                                    S+ 
Sbjct: 407 VQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNT 466

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           ++ +S+V MYA C  +++A++ FN I+L+DVV WN+++ AYA  G    +  LF +M   
Sbjct: 467 IILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIAS 526

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLTQNSCGNE 486
            ++PN  ++ S++     +G ++E  + F  M+   G+ P +  +  ++  + +    + 
Sbjct: 527 RVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSA 586

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR--AIHGYLIRHDLCLPTPIVTSL 544
           A  F +EM      P+       L+A  +   +      A   + + HD    T     L
Sbjct: 587 AKRFLEEM---PFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHD---NTGCYVLL 640

Query: 545 VDMYAKCGNIHQAKRVFDISPSK 567
           ++MYA+ G      R+  +  SK
Sbjct: 641 LNMYAEAGRWEDVNRIKLLMESK 663



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 163/342 (47%), Gaps = 33/342 (9%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+ IH   ++ G  F  +  +ET L+  Y +C  L  A  +F R+  KNV SW +II   
Sbjct: 349 GRTIHGYAMRRG--FLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAY 406

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            + G +  AL  F E+ +  + PD+  + ++L A      +  GR +H Y++K  +    
Sbjct: 407 VQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNT 466

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            + +SL+ MY  CGDLE+ARK F+ ++ ++VV+WNS+I+ Y  +G    ++ +F EM   
Sbjct: 467 IILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIAS 526

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQ-----AHAVAVINGME----LDNVLGSSIINFY 328
            V P + +  S+L+A +    +DEG +          +  G+E    + +++G +  NF 
Sbjct: 527 RVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRT-GNFS 585

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388
           +    LE+   V +  +      W  L+ +       D+ +A    +   K E  +    
Sbjct: 586 AAKRFLEEMPFVPTARI------WGSLLNA--SRNHKDITIAEFAAEQIFKMEHDNTGCY 637

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           V              LL  YA+ GR  + +R+   M+ +GIS
Sbjct: 638 VL-------------LLNMYAEAGRWEDVNRIKLLMESKGIS 666


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 188/596 (31%), Positives = 319/596 (53%), Gaps = 28/596 (4%)

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           +L  C   G +G  RAVHG++ K G    +FVA+SL++ Y +C    +AR++FDGM  RN
Sbjct: 84  LLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERN 143

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           VV W +++ GY  N      + VF EM   G  P+  ++ + L+A      +D GKQ H 
Sbjct: 144 VVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHG 203

Query: 308 VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
            A+  G E    +G+S+ + Y+K+G L+ A   F R+ E++++TW  +I++  +  +   
Sbjct: 204 YAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVE 263

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           +  S  +DM      +D    + N   L  V+   +L     DL    +     +++   
Sbjct: 264 LGMSLFIDML-----MDGV--MPNEFTLTSVM---SLCGTRLDLNLGKQVQAFSFKI--- 310

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ------- 480
           G   N+   NS +  +LR G+ +EA  +F QM+      ++ITW  +ISG  Q       
Sbjct: 311 GCETNLPVKNSTMYLYLRKGETDEAMRLFEQME----DASIITWNAMISGYAQIMDSAKD 366

Query: 481 ----NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
                S G +A+  F+++  + +KP   T +  LS C+ + +L  G  IH   I+     
Sbjct: 367 DLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLS 426

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              + ++LV+MY KCG I  A + F   P++    + +MISGY+ HG   EA+ LF+ ++
Sbjct: 427 DVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMR 486

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
             G+ P+ ITF ++L+ACS+AGLV E    F  M  ++ ++P ++H+GC++++  R G +
Sbjct: 487 LAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRV 546

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           ++A   I     +P+  I  SL++ C      ELA Y ++ LL+L+P     Y+ L N Y
Sbjct: 547 EDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMY 606

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
            ++ RW +V++VR +MK++ +      SWI I ++++ F A DR+HP+  E+Y  L
Sbjct: 607 ISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLL 662



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 159/597 (26%), Positives = 271/597 (45%), Gaps = 99/597 (16%)

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           ++EA+ +LTE K     +   +Y  LL  CV    +   + +H  + K G   + + +V 
Sbjct: 63  VQEAMTMLTEGKA----VQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGA--SADMFVA 116

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG---LNCRVGLSEKALIGFVEMQED 176
           T LV  Y +C A   A RLF  +  +NV +W A++    LN +  L    L  FVEM E 
Sbjct: 117 TSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPAL---GLEVFVEMLEM 173

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G  P ++ L   L AC A   V  G+ VHGY +K G +    + +SL  +Y K G L+ A
Sbjct: 174 GRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSA 233

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQN-GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
            + F  +  +NV+ W +MI    ++    E  + +F +M ++GV P   ++TS++S    
Sbjct: 234 LRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGT 293

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
              L+ GKQ  A +   G E +  + +S +  Y + G  ++A  +F +M +  I+TWN +
Sbjct: 294 RLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAM 353

Query: 356 IASYVQSGQS----------------------------DVVVASSIVDMYAKCERIDNAK 387
           I+ Y Q   S                            D+   SSI+ + +    ++  +
Sbjct: 354 ISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGE 413

Query: 388 QVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           Q+    I    L DVV+ + L+  Y   G   +A++ F +M     +   ++W S+I G+
Sbjct: 414 QIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMP----TRTFVTWTSMISGY 469

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPS 502
            ++GQ  EA  +F +M+  GV+PN IT+ +L+S  +      EA  +F  M  E  I+P 
Sbjct: 470 SQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEP- 528

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA----K 558
                                     ++ H  C        ++DM+ + G +  A    K
Sbjct: 529 --------------------------VVDHYGC--------MIDMFVRLGRVEDAFSFIK 554

Query: 559 RVFDISPSKELPVYNAMISGYAMHG---LAVEALALFKNLQQKGIDPDSITFTNILN 612
           R     P++   +++++++G   HG   LA  A      L+ KGI+    T+  +LN
Sbjct: 555 RT-GFEPNE--AIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIE----TYILLLN 604


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 208/722 (28%), Positives = 339/722 (46%), Gaps = 137/722 (18%)

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
           + P  +  C  +  V   + +H  +L  G    + + S LI  Y   G L  A  +    
Sbjct: 30  ITPPFIHKCKTISQV---KLIHQKLLSFGIL-TLNLTSHLISTYISVGCLSHAVSLLRRF 85

Query: 244 IARN--VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
              +  V  WNS+I  Y  NG   + + +F  M      P   +   +  A   + ++  
Sbjct: 86  PPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRC 145

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           G+ AHA++++ G   +  +G++++  YS+   L DA  VF  M   D+V+WN +I SY +
Sbjct: 146 GESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAK 205

Query: 362 SGQSDVV----------------------------------------------------- 368
            G+  V                                                      
Sbjct: 206 LGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMF 265

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE- 427
           V + +VDMYAKC  +D A  VF+++ ++DVV WN ++A Y+ +GR  +A RLF +MQ E 
Sbjct: 266 VGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEK 325

Query: 428 ----------------------------------GISPNIISWNSVILG----------- 442
                                             GI PN ++  SV+ G           
Sbjct: 326 IKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGK 385

Query: 443 ------------FLRNGQ------MNEAKDMFLQMQSLGV-----------QPNLITWTT 473
                         +NG       +N+  DM+ + + +             + +++TWT 
Sbjct: 386 EIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTV 445

Query: 474 LISGLTQNSCGNEAILFFQEMLETG--IKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           +I G +Q+   N+A+    EM E     +P+  TI+CAL AC  +A+LR G+ IH Y +R
Sbjct: 446 MIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALR 505

Query: 532 HDL-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           +    +P  +   L+DMYAKCG+I  A+ VFD   +K    + ++++GY MHG   EAL 
Sbjct: 506 NQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALG 565

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           +F  +++ G   D +T   +L ACSH+G++++G+E F  M +   V P  EH+ C+V+LL
Sbjct: 566 IFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLL 625

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
            R G L+ ALR+I  MP +P   +  + LS C    + EL EY +E + +L  ++ G+Y 
Sbjct: 626 GRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYT 685

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            LSN YA +GRW +V+++R +M+ KG++K PGCSW++  +    F   D++HP  +EIY 
Sbjct: 686 LLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQ 745

Query: 771 TL 772
            L
Sbjct: 746 VL 747


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 192/556 (34%), Positives = 296/556 (53%), Gaps = 59/556 (10%)

Query: 227 YGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG--VEPTR 283
           +   G L  A+K+FD + I RN   + +MI  Y   G   EA   +  M  +   V P  
Sbjct: 76  FDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPND 135

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            + T + SA +  + + EGKQAHA                +I F  + G           
Sbjct: 136 FTFTYVFSACSKFNGVFEGKQAHA---------------QMIKFPFEFG----------- 169

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
                + +WN L+  Y + G+  +VV                 ++VF+ I   DVV WN 
Sbjct: 170 -----VHSWNSLLDFYGKVGEVGIVV-----------------RRVFDKIEGPDVVSWNC 207

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           L+  Y   G   EA RLF +M       +++SW  +++G+   G ++EA  +F +M    
Sbjct: 208 LINGYVKSGDLDEARRLFDEMP----ERDVVSWTIMLVGYADAGFLSEASCLFDEMP--- 260

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
            + NL++W+ LI G  Q  C ++A+  F+EM    +K     +T  LSAC  + +L  GR
Sbjct: 261 -KRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGR 319

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
            +H Y+ +H + +   + T+L+DMY+KCG I  A +VF  +  K++ V+++MI G AMH 
Sbjct: 320 WLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHS 379

Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
              +A+ LF  + + GI+P  IT+ NIL AC+H+GLV+ GL++F  M  + + KP M+H+
Sbjct: 380 FGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHY 439

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
           GC+V+LL R G L +A RV+ TMP   D  I  +LLS C      EL E +   L+++EP
Sbjct: 440 GCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLHRNVELGEQVGRILIKMEP 499

Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHP 763
            N  NYV  SN YAA  RW+   ++R  MK +G++KNPGCS I++   +H FV+ D SHP
Sbjct: 500 QNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSSIELNGAVHEFVSRDHSHP 559

Query: 764 KTEEIYATLALLGMHV 779
           +++ IY  L +L  H+
Sbjct: 560 QSQVIYELLHILTNHM 575



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 125/241 (51%), Gaps = 2/241 (0%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           T ++V YA    L  AS LF  +  +N+ SW+A+I    ++G   KAL  F EMQ   V 
Sbjct: 237 TIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVK 296

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
            D  ++  +L AC  LG +  GR +H Y+ K G      ++++LIDMY KCG ++ A KV
Sbjct: 297 MDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKV 356

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F     + V  W+SMI G   +   E+AI +F +M   G+EP+ ++  +IL+A  +   +
Sbjct: 357 FQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLV 416

Query: 300 DEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIA 357
           D G Q     V N      +     I++   + GLL DA  VV +  V+ D   W  L++
Sbjct: 417 DVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLS 476

Query: 358 S 358
           +
Sbjct: 477 A 477



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 153/348 (43%), Gaps = 74/348 (21%)

Query: 79  PEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD---ALDVA 135
           P+    LLQ C   +D+    Q+H  ++K      + +Y   +L++ +A  D   +L+ A
Sbjct: 31  PDHAISLLQNCKNPKDLI---QLHTLLIKTS--LIKEKYAFGRLLLSFASFDNLGSLNYA 85

Query: 136 SRLFCRLRV-KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG--VSPDNFVLPNVLKAC 192
            +LF  + + +N F +  +I      G   +A   +  M  D   V P++F    V  AC
Sbjct: 86  QKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSAC 145

Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC---------------------- 230
                V  G+  H  ++K  F+  V   +SL+D YGK                       
Sbjct: 146 SKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSW 205

Query: 231 ----------GDLEEARKVFDGMIARNVVAWNSMIV------------------------ 256
                     GDL+EAR++FD M  R+VV+W  M+V                        
Sbjct: 206 NCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLV 265

Query: 257 -------GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVA 309
                  GY+Q G   +A+ +F EM +  V+   V VT++LSA A L ALD+G+  H   
Sbjct: 266 SWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYI 325

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
             +G+++D  L +++I+ YSK G ++ A  VF    ++ +  W+ +I 
Sbjct: 326 DKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIG 373



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 23/225 (10%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ +L K Y  QI   SK      A++L  EM+    ++   I   LL  C     +  G
Sbjct: 266 SWSALIKGYI-QIGCYSK------ALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQG 318

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           + +H  I K+G     + ++ T L+  Y+KC  +D+A ++F     K VF W+++IG   
Sbjct: 319 RWLHMYIDKHG--IKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLA 376

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL-------KV 211
                EKA+  F +M E G+ P      N+L AC   G V  G  +   ++       ++
Sbjct: 377 MHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRM 436

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
              GC+      +D+ G+ G L +A +V + M +  +   W +++
Sbjct: 437 QHYGCI------VDLLGRAGLLHDAFRVVETMPVKADPAIWRALL 475


>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
 gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
          Length = 643

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 191/641 (29%), Positives = 332/641 (51%), Gaps = 20/641 (3%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  +L+ C   RD+   +Q    I ++G  F  + Y+   LV  Y KC ++  A  +F R
Sbjct: 15  HASILRDCASARDLTAAKQAQWEIARDG--FGGDRYLGNLLVQAYGKCGSVRDAREVFDR 72

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           ++ +N+FSW  ++G     G   +AL  F E+Q  G++ DN  L + LKAC   G +  G
Sbjct: 73  IQRRNIFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEG 132

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R +H     +G++  + VA++L+ MYGKCG LEEA+ VF  ++ RN V+WN+M+  Y QN
Sbjct: 133 RGIHASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQN 192

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G  EEA+R++  M  EG++P   +  S+L         + G + H   + +G   +  L 
Sbjct: 193 GHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEG--EHGTRIHDQVLESGFGSNTTLA 250

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +++++ Y   G ++DA  VF  + E+ +V+WN ++ +Y Q+G+         VD++ K +
Sbjct: 251 NALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRY-----GKAVDLFWKMD 305

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +  A    NS+   +      LL A A  G      ++  ++   G+   +    ++I 
Sbjct: 306 EMRRALVEPNSVTFVN------LLVACAATGFLEAGRKIHAEVASLGLLSTLSVGGALIN 359

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
            +   G +  AK +F  +       NL++W  LI     +  G EA+   Q+M   G+KP
Sbjct: 360 MYSECGNLVLAKSVFDSVP----HKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKP 415

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
              T    L AC+   +L  G+AIH  +    L     I T+L+++Y KCG++ QA+ VF
Sbjct: 416 DKFTFISVLHACSASEALAEGKAIHALIAASGLERDEAIGTALINLYGKCGSLEQARNVF 475

Query: 562 -DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
            D+   + L  +N+M++     G   + + +   +  +GI PD +TF ++L ACSH G +
Sbjct: 476 LDMKSRRNLVTWNSMLAAACTKGGLEDCVEIIHMMGLEGIMPDELTFLSVLFACSHGGSI 535

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            +GL+LF+    D+ +  + +H+ CVV++L R G L+EA  V+  MP   +     +LL 
Sbjct: 536 QQGLDLFLSAGVDYGIATNTKHYVCVVDILGRVGRLEEAQEVLNRMPFQANDVAWMTLLG 595

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721
            C    + E     ++++++L+P N   Y  LS  ++ +GR
Sbjct: 596 ACRIHRDFEQGRRAADYVIELDPQNAAPYALLSTMFSVAGR 636



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/529 (26%), Positives = 231/529 (43%), Gaps = 106/529 (20%)

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           S  SIL   A+   L   KQA      +G   D  LG+ ++  Y K G + DA  VF R+
Sbjct: 14  SHASILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRI 73

Query: 345 VERDIVTWNLLIASYVQSG----------------------------------------- 363
             R+I +W +++ +Y  +G                                         
Sbjct: 74  QRRNIFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEGR 133

Query: 364 -----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                      +S+++VA+++V MY KC  ++ AK VF +++ R+ V WN +LAAYA  G
Sbjct: 134 GIHASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNG 193

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILG------------------------------ 442
              EA RL+  M  EGI P+  ++ SV+ G                              
Sbjct: 194 HCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEGEHGTRIHDQVLESGFGSNTTLANAL 253

Query: 443 ---FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF---QEMLE 496
              +   G++++A+ +F  +     +  +++W  +++   QN    +A+  F    EM  
Sbjct: 254 VSMYGSGGRVDDARYVFDGI----AEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRR 309

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
             ++P++ T    L AC     L  GR IH  +    L     +  +L++MY++CGN+  
Sbjct: 310 ALVEPNSVTFVNLLVACAATGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSECGNLVL 369

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           AK VFD  P K L  +N +I  YA  G   EAL + + ++ +G+ PD  TF ++L+ACS 
Sbjct: 370 AKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSA 429

Query: 617 AGLVNEGLELFV-----GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
           +  + EG  +       G+  D  +  ++      +NL  +CG+L++A  V L M    +
Sbjct: 430 SEALAEGKAIHALIAASGLERDEAIGTAL------INLYGKCGSLEQARNVFLDMKSRRN 483

Query: 672 AHIIGSLL-STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
                S+L + C K    +  E I  H++ LE   P     LS  +A S
Sbjct: 484 LVTWNSMLAAACTKGGLEDCVEII--HMMGLEGIMPDELTFLSVLFACS 530



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 11/211 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I S + +   +EA+ +  +M+    +     +  +L  C     +  G+ IHA I  +G 
Sbjct: 389 IGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSASEALAEGKAIHALIAASG- 447

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRV-KNVFSWAAIIGLNCRVGLSEKALIG 169
              R+E + T L+  Y KC +L+ A  +F  ++  +N+ +W +++   C  G  E  +  
Sbjct: 448 -LERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTWNSMLAAACTKGGLEDCVEI 506

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS----LID 225
              M  +G+ PD     +VL AC   G +  G  +    L  G D  +   +     ++D
Sbjct: 507 IHMMGLEGIMPDELTFLSVLFACSHGGSIQQGLDL---FLSAGVDYGIATNTKHYVCVVD 563

Query: 226 MYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
           + G+ G LEEA++V + M    N VAW +++
Sbjct: 564 ILGRVGRLEEAQEVLNRMPFQANDVAWMTLL 594


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 190/561 (33%), Positives = 303/561 (54%), Gaps = 30/561 (5%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARN-VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           L  +Y     +  AR++FD    R+     NSMI  YV      E+  ++ ++       
Sbjct: 26  LAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFT 85

Query: 282 TRVSVTSILSASANLD-ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
                 S+L+ S  L+ A+ EG++ H+  V  G  LD    +++++ Y+K G ++ A  +
Sbjct: 86  PDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKL 145

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  M++R  V+W  LI  YV+SG                   +DNA ++F+ +I +D   
Sbjct: 146 FDEMIDRSQVSWTALIGGYVRSGD------------------MDNAGKLFDQMIEKDSAA 187

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           +NT++ AY  LG    A +LF +M       +++SW  +I G+  NG ++ A+ +F  M 
Sbjct: 188 FNTMIDAYVKLGDMCSARKLFDEMP----ERSVVSWTIMIYGYSSNGNLDSARSLFDAMP 243

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSACTDVASL 519
               + NL +W  +ISG  QN    EA+  F EM  T  ++P   TI   L A  D+ +L
Sbjct: 244 ----EKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGAL 299

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
             G  +H ++ R  L   T + T+L+DMYAKCG I +++ VFD  P KE   +NA+I+ +
Sbjct: 300 DLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAF 359

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
           A++G A EAL LF  +  KG  P+ IT   +L+AC+H+GLV EG   F  M  +  + P 
Sbjct: 360 AINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAM-EEFGLTPK 418

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           +EH+GC+V+LL R G L EA +++ +MP + +  I+ S L  C  S +   AE + +  +
Sbjct: 419 IEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAI 478

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           ++E  N GNY+ L N YA   RW E  +V+ +M+  G++K  GCS I++   +  FVA D
Sbjct: 479 KMEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGD 538

Query: 760 RSHPKTEEIYATLALLGMHVR 780
           R HPK E I++ L  L +H++
Sbjct: 539 RVHPKWEAIHSVLGQLWVHMK 559



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 204/465 (43%), Gaps = 67/465 (14%)

Query: 58  KQIREAVDLLTEMKCRNFQIGPE--IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARN 115
           +Q  E+  L  +++ RN    P+   +  L + C     ++ GQ+IH+ ++  G  F  +
Sbjct: 66  RQYSESFALYRDLR-RNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVG--FCLD 122

Query: 116 EYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
            Y  T LV  YAK   +D A +LF  +  ++  SW A+IG   R G  + A   F +M  
Sbjct: 123 LYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM-- 180

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
             +  D+     ++ A   LG +   R +   +     +  V   + +I  Y   G+L+ 
Sbjct: 181 --IEKDSAAFNTMIDAYVKLGDMCSARKLFDEMP----ERSVVSWTIMIYGYSSNGNLDS 234

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASA 294
           AR +FD M  +N+ +WN+MI GY QN    EA+++F+EM +   +EP  V++ S+L A A
Sbjct: 235 ARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIA 294

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
           +L ALD G   H       ++    +G+++I+ Y+K G +  +  VF  M E++  +WN 
Sbjct: 295 DLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNA 354

Query: 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
           LI ++  +G                                                 R+
Sbjct: 355 LINAFAING-------------------------------------------------RA 365

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
            EA  LF +M  +G  PN I+   V+     +G + E K  F  M+  G+ P +  +  +
Sbjct: 366 KEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCM 425

Query: 475 ISGLTQNSCGNEAILFFQEML--ETGIKPSTTTITCALSACTDVA 517
           +  L +  C  EA    + M     GI  S+    C  S   DVA
Sbjct: 426 VDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYS--KDVA 468



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 3/199 (1%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEI-YGELLQGCVYKRDMYTGQQIHAR 104
           S+   IS   + KQ  EA+ L  EM+        E+    +L        +  G  +H  
Sbjct: 249 SWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRF 308

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           + +      R   V T L+  YAKC  +  +  +F  +  K   SW A+I      G ++
Sbjct: 309 VRRKK--LDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAK 366

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
           +AL  F+EM   G  P+   +  VL AC   G V  G+     + + G    +     ++
Sbjct: 367 EALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCMV 426

Query: 225 DMYGKCGDLEEARKVFDGM 243
           D+ G+ G L+EA K+ + M
Sbjct: 427 DLLGRAGCLQEAEKLMESM 445


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 223/783 (28%), Positives = 372/783 (47%), Gaps = 123/783 (15%)

Query: 89   CVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVF 148
            C+        + +H   +K G     + +V   LV  YAK   +  A  LF  + +++V 
Sbjct: 737  CLLSASPSAAESLHGYAVKIG--LQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVV 794

Query: 149  SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208
             W  ++      GL  +AL+ F E    G+ PD+  L      C     V   + V  + 
Sbjct: 795  LWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTL------CTLARVVKSKQNVLEWQ 848

Query: 209  LKVGFDGCVFVASSLIDMYGKCGDLEEARKVF---DGMIARNVVAWNSMIVGYVQNGLNE 265
            LK             +  YG         K+F   D     +V+AWN  +  ++Q G   
Sbjct: 849  LKQ------------LKAYGT--------KLFMYDDDDDGSDVIAWNKTLSWFLQRGETW 888

Query: 266  EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
            EA+  F +M    V    ++   +LS  A L+ L+ GKQ H + V +G++    +G+ +I
Sbjct: 889  EAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLI 948

Query: 326  NFYSKVGLLEDAEVVFSRMVERDIVTWNLL------------------------------ 355
            N Y K G +  A  VF +M E D+V+WN +                              
Sbjct: 949  NMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQF 1008

Query: 356  -IASYVQSGQS----------------------DVVVASSIVDMYAKCERIDNAKQVFNS 392
             +AS +++  S                      D  V+++++D+Y+K  +++ A+ +F +
Sbjct: 1009 TVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVN 1068

Query: 393  IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS-------------- 438
                D+  WN ++  Y   G   +A RL+  MQ  G   N I+  +              
Sbjct: 1069 QDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQG 1128

Query: 439  -----------------VILG----FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
                             VI G    +L+ G+M  A+ +F ++ S    P+ + WTT+ISG
Sbjct: 1129 KQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPS----PDDVAWTTMISG 1184

Query: 478  LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
              +N     A+  +  M  + ++P   T    + AC+ + +L  GR IH   ++ +    
Sbjct: 1185 CVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFD 1244

Query: 538  TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
              ++TSLVDMYAKCGNI  A+ +F  + +  +  +NAMI G A HG A EAL  F+ ++ 
Sbjct: 1245 PFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKS 1304

Query: 598  KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
            +G+ PD +TF  +L+ACSH+GLV+E  E F  M   + ++P +EH+ C+V+ LSR G + 
Sbjct: 1305 RGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIR 1364

Query: 658  EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
            EA +VI +MP +  A +  +LL+ C    + E  + ++E LL LEP +   YV LSN YA
Sbjct: 1365 EAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYA 1424

Query: 718  ASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGM 777
            A+ +W  V+  R++M++  ++K+PG SW+ +  ++H+FVA DRSH +T+ IY  +  +  
Sbjct: 1425 AANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMK 1484

Query: 778  HVR 780
             +R
Sbjct: 1485 RIR 1487



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 160/647 (24%), Positives = 297/647 (45%), Gaps = 86/647 (13%)

Query: 85   LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL-- 142
            +L+  +   D+  G++ HARIL +G    R  ++   L+  Y+KC +L  A +LF     
Sbjct: 632  ILRHAIAASDLPLGKRAHARILTSGHHPDR--FLTNNLITMYSKCGSLSSARKLFDTTPD 689

Query: 143  RVKNVFSWAAIIGLNCRVGLSEKALIGF---VEMQEDGVSPDNFVLPNVLKACGALGWVG 199
              +++ +W AI+  +     ++KA  GF     ++   VS     L  V K C       
Sbjct: 690  TSRDLVTWNAILSAH-----ADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPS 744

Query: 200  FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
               ++HGY +K+G    VFVA +L+++Y K G + EAR +FDGM  R+VV WN M+  YV
Sbjct: 745  AAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYV 804

Query: 260  QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG--KQAHAVAVINGMELD 317
              GL  EA+ +F E    G+ P  V++ ++     +   + E   KQ  A      M  D
Sbjct: 805  DTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDD 864

Query: 318  NVLGSSII------NFYSKVGLLEDAEVVFSRMVER----DIVTWNLLIAS--------- 358
            +  GS +I      +++ + G   +A   F  M+      D +T+ ++++          
Sbjct: 865  DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLEL 924

Query: 359  -------YVQSGQSDVV-VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
                    V+SG   VV V + +++MY K   +  A+ VF  +   D+V WNT+++  A 
Sbjct: 925  GKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCAL 984

Query: 411  LGRSGEASRLFYQMQLEGISPNIISWNSVI-----LG----------------------- 442
             G    +  +F  +   G+ P+  +  SV+     LG                       
Sbjct: 985  SGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSF 1044

Query: 443  --------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
                    + ++G+M EA+ +F+         +L +W  ++ G   +    +A+  +  M
Sbjct: 1045 VSTTLIDVYSKSGKMEEAEFLFVNQDGF----DLASWNAMMHGYIVSGDFPKALRLYILM 1100

Query: 495  LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
             E+G + +  T+  A  A   +  L+ G+ I   +++    L   +++ ++DMY KCG +
Sbjct: 1101 QESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEM 1160

Query: 555  HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
              A+R+F+  PS +   +  MISG   +G    AL  + +++   + PD  TF  ++ AC
Sbjct: 1161 ESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKAC 1220

Query: 615  SHAGLVNEGLELFVGMFSDHQVKPSMEHF--GCVVNLLSRCGNLDEA 659
            S    + +G ++        ++  + + F    +V++ ++CGN+++A
Sbjct: 1221 SLLTALEQGRQIHANTV---KLNCAFDPFVMTSLVDMYAKCGNIEDA 1264



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 137/596 (22%), Positives = 260/596 (43%), Gaps = 95/596 (15%)

Query: 187  NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM--I 244
            ++L+   A   +  G+  H  +L  G     F+ ++LI MY KCG L  ARK+FD     
Sbjct: 631  SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 245  ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            +R++V WN+++  +       +   +F  +    V  TR ++  +        +    + 
Sbjct: 691  SRDLVTWNAILSAHADKA--RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAES 748

Query: 305  AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG- 363
             H  AV  G++ D  +  +++N Y+K G + +A V+F  M  RD+V WN+++ +YV +G 
Sbjct: 749  LHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGL 808

Query: 364  ----------------QSDVVVASSIVDMYAKCE-----RIDNAKQVFNSIIL------- 395
                            + D V   ++  +    +     ++   K     + +       
Sbjct: 809  EYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDG 868

Query: 396  RDVVLWNTLLAAYADLGRSGEASRLFYQM-----------------------------QL 426
             DV+ WN  L+ +   G + EA   F  M                             Q+
Sbjct: 869  SDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQI 928

Query: 427  EGIS-----PNIIS-WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
             GI        ++S  N +I  +++ G ++ A+ +F QM  +    +L++W T+ISG   
Sbjct: 929  HGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEV----DLVSWNTMISGCAL 984

Query: 481  NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV-ASLRNGRAIHGYLIRHDLCLPTP 539
            +     ++  F ++L  G+ P   T+   L AC+ +         IH   ++  + L + 
Sbjct: 985  SGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSF 1044

Query: 540  IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
            + T+L+D+Y+K G + +A+ +F      +L  +NAM+ GY + G   +AL L+  +Q+ G
Sbjct: 1045 VSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESG 1104

Query: 600  IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG---------CVVNLL 650
               + IT  N   A    GL        VG+    Q++  +   G          V+++ 
Sbjct: 1105 ERANQITLANAAKAA--GGL--------VGLKQGKQIQAVVVKRGFNLDLFVISGVLDMY 1154

Query: 651  SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH--LLQLEPD 704
             +CG ++ A R+   +P  PD     +++S CV++ + E A +   H  L +++PD
Sbjct: 1155 LKCGEMESARRIFNEIPS-PDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPD 1209



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 86/194 (44%), Gaps = 3/194 (1%)

Query: 51   ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
            IS   +  Q   A+     M+    Q     +  L++ C     +  G+QIHA  +K   
Sbjct: 1182 ISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNC 1241

Query: 111  FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
             F  + +V T LV  YAKC  ++ A  LF R     + SW A+I    + G +E+AL  F
Sbjct: 1242 AF--DPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFF 1299

Query: 171  VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFVASSLIDMYGK 229
             EM+  GV+PD      VL AC   G V         + K+ G +  +   S L+D   +
Sbjct: 1300 EEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSR 1359

Query: 230  CGDLEEARKVFDGM 243
             G + EA KV   M
Sbjct: 1360 AGRIREAEKVISSM 1373


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 190/561 (33%), Positives = 303/561 (54%), Gaps = 30/561 (5%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARN-VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           L  +Y     +  AR++FD    R+     NSMI  YV      E+  ++ ++       
Sbjct: 200 LAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFT 259

Query: 282 TRVSVTSILSASANLD-ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
                 S+L+ S  L+ A+ EG++ H+  V  G  LD    +++++ Y+K G ++ A  +
Sbjct: 260 PDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKL 319

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  M++R  V+W  LI  YV+SG                   +DNA ++F+ +I +D   
Sbjct: 320 FDEMIDRSQVSWTALIGGYVRSGD------------------MDNAGKLFDQMIEKDSAA 361

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           +NT++ AY  LG    A +LF +M       +++SW  +I G+  NG ++ A+ +F  M 
Sbjct: 362 FNTMIDAYVKLGDMCSARKLFDEMP----ERSVVSWTIMIYGYSSNGNLDSARSLFDAMP 417

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSACTDVASL 519
               + NL +W  +ISG  QN    EA+  F EM  T  ++P   TI   L A  D+ +L
Sbjct: 418 ----EKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGAL 473

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
             G  +H ++ R  L   T + T+L+DMYAKCG I +++ VFD  P KE   +NA+I+ +
Sbjct: 474 DLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAF 533

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
           A++G A EAL LF  +  KG  P+ IT   +L+AC+H+GLV EG   F  M  +  + P 
Sbjct: 534 AINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAM-EEFGLTPK 592

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           +EH+GC+V+LL R G L EA +++ +MP + +  I+ S L  C  S +   AE + +  +
Sbjct: 593 IEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAI 652

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           ++E  N GNY+ L N YA   RW E  +V+ +M+  G++K  GCS I++   +  FVA D
Sbjct: 653 KMEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGD 712

Query: 760 RSHPKTEEIYATLALLGMHVR 780
           R HPK E I++ L  L +H++
Sbjct: 713 RVHPKWEAIHSVLGQLWVHMK 733



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 204/465 (43%), Gaps = 67/465 (14%)

Query: 58  KQIREAVDLLTEMKCRNFQIGPE--IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARN 115
           +Q  E+  L  +++ RN    P+   +  L + C     ++ GQ+IH+ ++  G  F  +
Sbjct: 240 RQYSESFALYRDLR-RNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVG--FCLD 296

Query: 116 EYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
            Y  T LV  YAK   +D A +LF  +  ++  SW A+IG   R G  + A   F +M  
Sbjct: 297 LYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM-- 354

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
             +  D+     ++ A   LG +   R +   +     +  V   + +I  Y   G+L+ 
Sbjct: 355 --IEKDSAAFNTMIDAYVKLGDMCSARKLFDEMP----ERSVVSWTIMIYGYSSNGNLDS 408

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASA 294
           AR +FD M  +N+ +WN+MI GY QN    EA+++F+EM +   +EP  V++ S+L A A
Sbjct: 409 ARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIA 468

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
           +L ALD G   H       ++    +G+++I+ Y+K G +  +  VF  M E++  +WN 
Sbjct: 469 DLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNA 528

Query: 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
           LI ++  +G                                                 R+
Sbjct: 529 LINAFAING-------------------------------------------------RA 539

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
            EA  LF +M  +G  PN I+   V+     +G + E K  F  M+  G+ P +  +  +
Sbjct: 540 KEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCM 599

Query: 475 ISGLTQNSCGNEAILFFQEML--ETGIKPSTTTITCALSACTDVA 517
           +  L +  C  EA    + M     GI  S+    C  S   DVA
Sbjct: 600 VDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYS--KDVA 642



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 3/199 (1%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEI-YGELLQGCVYKRDMYTGQQIHAR 104
           S+   IS   + KQ  EA+ L  EM+        E+    +L        +  G  +H  
Sbjct: 423 SWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRF 482

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
           + +      R   V T L+  YAKC  +  +  +F  +  K   SW A+I      G ++
Sbjct: 483 VRRKK--LDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAK 540

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
           +AL  F+EM   G  P+   +  VL AC   G V  G+     + + G    +     ++
Sbjct: 541 EALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCMV 600

Query: 225 DMYGKCGDLEEARKVFDGM 243
           D+ G+ G L+EA K+ + M
Sbjct: 601 DLLGRAGCLQEAEKLMESM 619


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 226/725 (31%), Positives = 360/725 (49%), Gaps = 57/725 (7%)

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVFSW 150
           RD  + + IH   L+          V   L+  YA+C  LD A  LF      +++  S+
Sbjct: 62  RDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFAATPPDLRDAVSY 121

Query: 151 AAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG--FGRAVHGYV 208
            ++I   C       AL    +M  D     +F L +VL AC  L   G   GR  H + 
Sbjct: 122 NSLISALCLFRRWGHALDALRDMLADH-EVSSFTLVSVLLACSHLADQGHRLGREAHAFA 180

Query: 209 LKVGF---DGCVFVASSLIDMYGKCGDLEEARKVF--DGMIARNVVAWNSMIVGYVQNGL 263
           LK GF       F  ++L+ MY + G +++A+++F   G    ++V WN+MI   VQ G 
Sbjct: 181 LKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGR 240

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA-VAVINGMELDNVLGS 322
            EEA++V Y+M   GV P  V+  S L A + L+ L  G++ HA V   + +  ++ + S
Sbjct: 241 CEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVAS 300

Query: 323 SIINFYSKVGLLEDAEVVFSRMVE--RDIVTWNLLIASYVQSGQSDV------------- 367
           ++++ Y+    +  A  VF  + E  R +  WN +I  Y Q G  D              
Sbjct: 301 ALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEA 360

Query: 368 ------VVASSIVDMYAKCERIDNAKQVFNSIILRDVV----LWNTLLAAYADLGRSGEA 417
                    + ++   A+ E     + V   ++ RD+     + N L+  YA LGR  EA
Sbjct: 361 GCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEA 420

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
             +F  + L     +I+SWN++I G +  G ++EA  +  +MQ   +  +  +  T++ G
Sbjct: 421 HTIFAMIDLR----DIVSWNTLITGCIVQGLISEAFQLVREMQ---LPSSAASGETMLEG 473

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
              +  G   +            P+  T+   L  C  +A+   G+ IHGY +RH L   
Sbjct: 474 DDTSVDGQRCM------------PNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESD 521

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             + ++LVDMYAKCG +  A+ VFD  P + +  +N +I  Y MHGL  EALALF  +  
Sbjct: 522 LAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVA 581

Query: 598 KG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
            G   P+ +TF   L ACSH+GLV+ GLELF GM  D+  +P+     CVV++L R G L
Sbjct: 582 NGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRL 641

Query: 657 DEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           DEA  +I +M P +       ++L  C      +L    +E L +LEPD   +YV L N 
Sbjct: 642 DEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNI 701

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           Y+A+G W   ++VR +M+++G+ K PGCSWI++   +H F+A + +HP++ +++A +  L
Sbjct: 702 YSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDAL 761

Query: 776 GMHVR 780
              +R
Sbjct: 762 WERMR 766



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 212/453 (46%), Gaps = 47/453 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS L +  +  EAV +L +M     +     +   L  C     +  G+++HA +LK+ D
Sbjct: 232 ISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDD 291

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVFSWAAII-GLNCRVGLSEKAL 167
             A N +V + LV  YA  + +  A R+F  +    + +  W A+I G     G+ E+A+
Sbjct: 292 LAA-NSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAI 350

Query: 168 IGFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
             F  M+ E G +P    +  VL AC          AVHGYV+K       FV ++L+DM
Sbjct: 351 ELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDM 410

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT----------- 275
           Y + G ++EA  +F  +  R++V+WN++I G +  GL  EA ++  EM            
Sbjct: 411 YARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETM 470

Query: 276 LEGVE---------PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIIN 326
           LEG +         P  +++ ++L   A L A   GK+ H  AV + +E D  +GS++++
Sbjct: 471 LEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVD 530

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNA 386
            Y+K G L  A  VF R+  R+++TWN+LI +Y   G  D  +A  + D       + N 
Sbjct: 531 MYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALA--LFD-----RMVANG 583

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASR---LFYQMQLE-GISPNIISWNSVILG 442
           +   N +         T +AA A    SG   R   LF  M+ + G  P       V+  
Sbjct: 584 EATPNEV---------TFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDV 634

Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
             R G+++EA  +   M     +  +  W+T++
Sbjct: 635 LGRAGRLDEAYGIISSMAP--GEHQVSAWSTML 665


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  332 bits (850), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 219/700 (31%), Positives = 351/700 (50%), Gaps = 100/700 (14%)

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
           C +  K+ F W ++I  N      + AL  F  MQ   V  +NF  P +LKAC AL  + 
Sbjct: 11  CSISHKDTFHWNSLIAKNATQN-PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLL 69

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI--ARNVVAWNSMIVG 257
               VH Y+ ++G     F A++L+D YGKCG    A +VFD M   + +VV+W ++I  
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 258 YVQNGLNEEAIRVFYEMT-LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           Y  NG  +EA   F  M  + G + +      ++S  A + A   G              
Sbjct: 130 YSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVG-------------- 175

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
               GS+ +   S V  L              +V +   +++++          +S+V M
Sbjct: 176 ---CGSNCLRRGSAVHGL--------------VVKYGFGVSTHL---------GNSMVHM 209

Query: 377 YAKCERIDNAKQVFNSIIL--RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS---P 431
           Y+ C+ +  A +VFN I +  RDVV WN+L++ +   G +  A R F  M  EG S   P
Sbjct: 210 YSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEP 269

Query: 432 NII------------------SW----------------NSVILGFL-----RNGQMNEA 452
           N +                  SW                + V+L  L     R G +  A
Sbjct: 270 NRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALA 329

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG------IKPSTTTI 506
           +++F  ++      N++ W+ +I+G  Q SC  EA+  F++ML  G      +KP+  T+
Sbjct: 330 REIFDGVEG----KNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTL 385

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD--IS 564
              ++AC+ + + R+   IH Y +   L     I ++L+DM AKCG+I   ++VF     
Sbjct: 386 VSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDE 445

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
            ++ +  +++MI    +HG    AL LF  ++  G +P+ IT+ ++L+ACSHAGLV +G 
Sbjct: 446 STRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGK 505

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
             F  M  D+ + P+ +H+ C+V+LL R G+LDEA  VIL MP   D  + GSLL+ C  
Sbjct: 506 SCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHL 565

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
               +L E + + +L L+ ++ G++V L+N Y  +GRW++V ++R  ++  GLRK PG S
Sbjct: 566 HGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQS 625

Query: 745 WIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSK 784
           +I+IG E++ F+A DRSHP++E IY  L  L   VR  +K
Sbjct: 626 FIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAK 665



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 164/350 (46%), Gaps = 28/350 (8%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGD--FFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
           LL+ C     + T   +H  I         A++  V T L+  +A+C  L +A  +F  +
Sbjct: 277 LLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGV 336

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG------VSPDNFVLPNVLKACGALG 196
             KNV  W+A+I    +    E+AL  F +M  +G      V P+   L +V+ AC  LG
Sbjct: 337 EGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLG 396

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM--IARNVVAWNSM 254
                  +H Y +  G D    +AS+LIDM  KCGD+E  R+VF  M    R VV+W+SM
Sbjct: 397 ASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSM 456

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           I     +G  + A+ +F EM   G EP  ++  S+LSA ++   +++GK     +  N M
Sbjct: 457 IGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGK-----SCFNSM 511

Query: 315 ELDNVLGSS------IINFYSKVGLLEDAE-VVFSRMVERDIVTWNLLIASYVQSGQSDV 367
           E D  +  +      +++   + G L++A  V+ +  ++ D+  W  L+A+    G   +
Sbjct: 512 EKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKL 571

Query: 368 --VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
             +V   I+ + +          V  + +  D   W+ ++    +L RSG
Sbjct: 572 GEIVEKKILSLDSN----SVGHHVLLANMYEDAGRWDDVVRMRVELRRSG 617


>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 757

 Score =  332 bits (850), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 208/731 (28%), Positives = 358/731 (48%), Gaps = 95/731 (12%)

Query: 89  CVYKRDMYTGQQIHARILKNGD-FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV 147
           C   R +  G  +H  +L + D    RN  +   L+  Y +C A + A  +F  +  KN 
Sbjct: 48  CSRLRALCLGCLVHRHLLASPDPNLVRNTVLNNHLITMYGRCAAPESARLVFDEMPAKNP 107

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGY 207
            SWA++I  + +   S  AL  F  M   G +PD F L + ++AC  LG +G GR VH  
Sbjct: 108 VSWASVIAAHAQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQ 167

Query: 208 VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267
            +K      + V ++L+ MY K G + +   +F  M  ++ ++W S+I G+ Q G   EA
Sbjct: 168 AMKSENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEA 227

Query: 268 IRVFYEMTLEGVE-PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIIN 326
           +++F EM  EG+  P      S+ SA   L +L+ G+Q H+++V   ++ ++  G S   
Sbjct: 228 LQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCS--- 284

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNA 386
                                                         + DMYA+C+++++A
Sbjct: 285 ----------------------------------------------LSDMYARCKKLESA 298

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS----------- 435
           K+VF  I   D+V WN+++ A +  G   EA  L  +M+  G+ P+ I+           
Sbjct: 299 KRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGC 358

Query: 436 ------------------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
                                    NS++  + R    + A D+F + +      +++TW
Sbjct: 359 DAIQHGRLMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHETR----DRDVVTW 414

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC--ALSACTDVASLRNGRAIHGYL 529
            ++++   Q+    E +     +L+  + PS   I+    LSA  ++      + +H   
Sbjct: 415 NSILTACVQHQ-HLEVVFKLFNLLQRSL-PSLDRISLNNVLSASAELGYFEMVKQVHTCT 472

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI-SPSKELPVYNAMISGYAMHGLAVEA 588
            +  L   T +   L+D YAKCG++  A ++F++   + ++  ++++I GYA  G   +A
Sbjct: 473 FKVGLVNDTMLSNGLIDTYAKCGSLDDAVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKA 532

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L LF  ++  G+ P+ +TF  +L ACS  GLV+EG   +  M  +H V P+ EH  CV++
Sbjct: 533 LDLFARMRNLGVRPNHVTFVGVLTACSRVGLVDEGCYYYSIMEPEHGVLPTREHCSCVID 592

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL+R G L EA + +  MP +PD  +  +LL+     N+ E+    +E +L ++P +   
Sbjct: 593 LLARAGRLTEAAKFVDQMPFEPDIVMWKTLLAGSKTHNDVEMGRRAAEGILNIDPSHSAA 652

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YV L N Y+ASG WNE ++++  M+  G++K+PG SW+++  EL VF+  DRSHP++EEI
Sbjct: 653 YVLLCNIYSASGDWNEFARLKKAMRSSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEI 712

Query: 769 YATLALLGMHV 779
           Y  L L+GM +
Sbjct: 713 YTMLELVGMEM 723


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  331 bits (849), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 190/611 (31%), Positives = 328/611 (53%), Gaps = 62/611 (10%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           F  ++++  + K G+L+ AR+VFD +   + V+W +MIVGY   GL + A+  F  M   
Sbjct: 80  FSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSS 139

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G+ PT+ + T++L++ A   ALD GK+ H+  V  G      + +S++N Y+K G    A
Sbjct: 140 GISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMA 199

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA-------------SSIVDMY------- 377
           +VVF RM  +D  TWN +I+ ++Q  Q D+ +A             +SI+  Y       
Sbjct: 200 KVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDI 259

Query: 378 -----------------------------AKCERIDNAKQVFNSIILRDV----VLWNTL 404
                                        A  E +   KQ+   I+  DV     + N L
Sbjct: 260 RALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNAL 319

Query: 405 LAAYADLGRSGEASRLFYQMQLEGI-SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           ++ YA  G    A R+   +++ G  S N+I++ S++ G+ + G ++ A+ +F  ++   
Sbjct: 320 ISMYAKSGAVEVAHRI---VEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLK--- 373

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
              +++ WT +I G  QN   ++A++ F+ M+  G KP+  T+   LS  + +ASL +G+
Sbjct: 374 -HRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGK 432

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMH 582
            +H   IR +      +  +L+ MY++ G+I  A+++F+ I   ++   + +MI   A H
Sbjct: 433 QLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQH 492

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           GL  EA+ LF+ + +  + PD IT+  +L+AC+H GLV +G   F  M + H ++P+  H
Sbjct: 493 GLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSH 552

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           + C+++LL R G L+EA   I  MP +PD    GSLLS+C      +LA+  +E LL ++
Sbjct: 553 YACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLID 612

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           P+N G Y+AL+N  +A G+W + ++VR  MK+K ++K  G SW+QI  ++H+F   D  H
Sbjct: 613 PNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALH 672

Query: 763 PKTEEIYATLA 773
           P+ + IY  ++
Sbjct: 673 PQRDAIYCMIS 683



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 183/685 (26%), Positives = 297/685 (43%), Gaps = 161/685 (23%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
            LLQ  +  RD + G+ IHARI+K+G  +    ++   L+  Y K  +   A RLF  + 
Sbjct: 17  HLLQSAIKSRDPFIGRCIHARIIKHGLRYL-GVFLTNNLLNLYVKTGSSSDAHRLFDEMP 75

Query: 144 VKNVFSWAAIIGLNCR-------------------------------VGLSEKALIGFVE 172
           +K  FSW  I+  + +                               +GL + A+  F+ 
Sbjct: 76  LKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLR 135

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M   G+SP  F   NVL +C A   +  G+ VH +V+K+G  G V VA+SL++MY KCGD
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195

Query: 233 LEEARKVFDGMIAR-------------------------------NVVAWNSMIVGYVQN 261
              A+ VFD M  +                               ++V+WNS+I GY   
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQ 255

Query: 262 GLNEEAIRVF-YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           G +  A+  F + +    ++P + ++ S+LSA AN ++L  GKQ HA  V   +++   +
Sbjct: 256 GYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAV 315

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G+++I+ Y+K G +E A     R+VE               +   +V+  +S++D Y K 
Sbjct: 316 GNALISMYAKSGAVEVAH----RIVE------------ITGTPSLNVIAFTSLLDGYFKI 359

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN-------- 432
             ID A+ +F+S+  RDVV W  ++  YA  G   +A  LF  M  EG  PN        
Sbjct: 360 GDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVL 419

Query: 433 -IIS--------------------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
            +IS                           N++I  + R+G + +A+ +F  + S    
Sbjct: 420 SVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSY--- 476

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            + +TWT++I  L Q+  GNEAI  F++ML   +KP   T    LSACT V  +  G++ 
Sbjct: 477 RDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSY 536

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
              +                            K V +I P+     Y  MI      GL 
Sbjct: 537 FNLM----------------------------KNVHNIEPTSSH--YACMIDLLGRAGLL 566

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNAC---SHAGLVNEGLELFVGMFSDHQVKPSME- 641
            EA    +N+    I+PD + + ++L++C    +  L     E  +       + P+   
Sbjct: 567 EEAYNFIRNMP---IEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLL------LIDPNNSG 617

Query: 642 HFGCVVNLLSRCGNLDEALRVILTM 666
            +  + N LS CG  ++A +V  +M
Sbjct: 618 AYLALANTLSACGKWEDAAKVRKSM 642



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 166/354 (46%), Gaps = 40/354 (11%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ S+   Y HQ         IR        +K  + +      G +L  C  +  +  G
Sbjct: 244 SWNSIITGYCHQ------GYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLG 297

Query: 99  QQIHARILKNG------------DFFARNEYVE-------------------TKLVVFYA 127
           +QIHA I++                +A++  VE                   T L+  Y 
Sbjct: 298 KQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYF 357

Query: 128 KCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPN 187
           K   +D A  +F  L+ ++V +W A+I    + GL   AL+ F  M  +G  P+N+ L  
Sbjct: 358 KIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAA 417

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA-R 246
           VL    +L  +  G+ +H   +++     V V ++LI MY + G +++ARK+F+ + + R
Sbjct: 418 VLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYR 477

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA- 305
           + + W SMI+   Q+GL  EAI +F +M    ++P  ++   +LSA  ++  +++GK   
Sbjct: 478 DTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYF 537

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
           + +  ++ +E  +   + +I+   + GLLE+A      M +E D+V W  L++S
Sbjct: 538 NLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSS 591


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  331 bits (849), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 187/593 (31%), Positives = 316/593 (53%), Gaps = 59/593 (9%)

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            + G++E AR  F+ M  R   ++N+++ GY +N L + A+ +F  M      P+R    
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRM------PSR---- 77

Query: 288 SILSASANLDALDEGKQA--HAVAVINGMELDN--VLGSSIINFYSKVGLLEDAEVVFSR 343
            + S +A +  L   +Q    A A +  +      V  +S++  Y + GLL DA  +F +
Sbjct: 78  DLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQ 137

Query: 344 MVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQVF 390
           M ER+ V++ +L+   + +G+              DVV  ++++  Y +  RI  A+ +F
Sbjct: 138 MPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALF 197

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
           + +  R+VV W  +++ YA  G    A +LF  M       N +SW ++++G+++ G + 
Sbjct: 198 DEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVE 253

Query: 451 EAKDMFLQMQSLGV-----------QPNLI----------------TWTTLISGLTQNSC 483
           +A ++F  M    V           Q  ++                TW+ +I    QN  
Sbjct: 254 DAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEF 313

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
             EA+  F+EML  G++P+  ++   L+ C  +A L  GR +H  ++R    +    V++
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSA 373

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+ MY KCGN+ +AKRVF     K++ ++N+MI+GYA HGL  +AL +F +++  G+ PD
Sbjct: 374 LITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPD 433

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            IT+   L ACS+ G V EG E+F  M  +  ++P  EH+ C+V+LL R G ++EA  +I
Sbjct: 434 GITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLI 493

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             MP +PDA I G+L+  C      E+AE+ ++ LL+LEP N G YV LS+ Y + GRW 
Sbjct: 494 KNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWE 553

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD-RSHPKTEEIYATLALL 775
           + S++R  +  + L K+PGCSWI+  + +H+F + D  +HP+   I   L  L
Sbjct: 554 DASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKL 606



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 136/244 (55%), Gaps = 12/244 (4%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++V + +   +D A  +F ++  ++  +W+A+I    +     +AL  F EM   GV P+
Sbjct: 273 MMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPN 332

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
              + ++L  C AL  + +GR VH  +L+  FD  VF  S+LI MY KCG+L++A++VF 
Sbjct: 333 YPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFH 392

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
               +++V WNSMI GY Q+GL E+A+ +F++M L G+ P  ++    L+A +    + E
Sbjct: 393 TFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKE 452

Query: 302 GKQAHAVAVINGMELDNVLG------SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNL 354
           G++     + N M +++ +       S +++   + GL+E+A  +   M VE D V W  
Sbjct: 453 GRE-----IFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGA 507

Query: 355 LIAS 358
           L+ +
Sbjct: 508 LMGA 511



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 158/354 (44%), Gaps = 66/354 (18%)

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           D  V   ++++  Y + G + EAR +FD M  RNVV+W +MI GY QNG    A ++F  
Sbjct: 171 DRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEV 230

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVG 332
           M     E   VS T++L     +  +  G    A  + N M    V   ++++  + + G
Sbjct: 231 MP----ERNEVSWTAML-----VGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQ------------------------------- 361
           +++ A+ VF +M ERD  TW+ +I +Y Q                               
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 362 ---------------------SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
                                S   DV   S+++ MY KC  +D AK+VF++   +D+V+
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVM 401

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           WN+++  YA  G   +A  +F+ M+L G+SP+ I++   +      G++ E +++F  M 
Sbjct: 402 WNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMT 461

Query: 461 -SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +  ++P    ++ ++  L ++    EA    + M    ++P        + AC
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM---PVEPDAVIWGALMGAC 512



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 198/468 (42%), Gaps = 61/468 (13%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ SL + Y        +   + +A+ L  +M  RN      + G LL           G
Sbjct: 114 SFTSLLRGYV-------RHGLLADAIRLFQQMPERNHVSYTVLLGGLLD---------AG 157

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +   AR L + +   R+    T ++  Y +   +  A  LF  +  +NV SW A+I    
Sbjct: 158 RVNEARRLFD-EMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMIS--- 213

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNF-VLPNVLKACGALGWVGFGRAVH----GYVLKVGF 213
                     G+ +  E  ++   F V+P   +       VG+ +A H      +     
Sbjct: 214 ----------GYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMP 263

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           +  V   ++++  +G+ G ++ A+ VF+ M  R+   W++MI  Y QN    EA+  F E
Sbjct: 264 EHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFRE 323

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M   GV P   SV SIL+  A L  LD G++ HA  +    ++D    S++I  Y K G 
Sbjct: 324 MLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGN 383

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           L+ A+ VF     +DIV WN +I  Y Q G                    + A  +F+ +
Sbjct: 384 LDKAKRVFHTFEPKDIVMWNSMITGYAQHGLG------------------EQALGIFHDM 425

Query: 394 ILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQL-EGISPNIISWNSVILGFLRNGQ 448
            L     D + +   L A +  G+  E   +F  M +   I P    ++ ++    R+G 
Sbjct: 426 RLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGL 485

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           + EA D+   ++++ V+P+ + W  L+     +     A    +++LE
Sbjct: 486 VEEAFDL---IKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLE 530



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 120/269 (44%), Gaps = 14/269 (5%)

Query: 26  SQTHLTKLRESDN-SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGE 84
           ++T   K+ E D+ ++ ++ K+Y        + + + EA+    EM  R  +        
Sbjct: 286 AKTVFEKMCERDDGTWSAMIKAY-------EQNEFLMEALSTFREMLWRGVRPNYPSVIS 338

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  C     +  G+++HA +L+    F  + +  + L+  Y KC  LD A R+F     
Sbjct: 339 ILTVCAALAVLDYGREVHAAMLRCS--FDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP 396

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           K++  W ++I    + GL E+AL  F +M+  G+SPD       L AC   G V  GR +
Sbjct: 397 KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREI 456

Query: 205 -HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG 262
            +   +           S ++D+ G+ G +EEA  +   M +  + V W +++ G  +  
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM-GACRMH 515

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
            N E I  F    L  +EP       +LS
Sbjct: 516 RNAE-IAEFAAKKLLELEPGNAGPYVLLS 543


>gi|357465513|ref|XP_003603041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492089|gb|AES73292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 729

 Score =  331 bits (849), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 202/676 (29%), Positives = 338/676 (50%), Gaps = 98/676 (14%)

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKA---------CGALGWVGFGRAVHGYVLKVGF 213
           +  AL+ F ++ +  V+P+ F    ++KA         C +   +   R +    LK G 
Sbjct: 29  TSPALVIFRQILQANVNPNEFTFSLLIKAYLSSPSFTHCPSTAALQ-ARQIQTQCLKRGV 87

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           +  + V +SLID+Y K G    AR +FD M  R+VV+WN +I GY QNG    AI++F +
Sbjct: 88  NQFIHVHTSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLFVD 147

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M  E  +P + ++ S+L +    + + +G+  H   +  G  LD+ L +++++ Y+K   
Sbjct: 148 MLRENFKPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDD 207

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------------------ 363
           LE ++++F  M E+ +V+WN +I  Y Q+G                              
Sbjct: 208 LEASQLLFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNLVSA 267

Query: 364 ----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                            +D  V +S+V +YAK    + AKQ++     +D++    ++++
Sbjct: 268 NAFPENVHCYVVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLITLTAIISS 327

Query: 408 YADLGRSGEASRLFYQ-MQLE----------------------------------GISPN 432
           Y++ G    A   F Q +QL+                                  G+S +
Sbjct: 328 YSEKGDIESAVECFIQTIQLDIKPDAVALIGVLHGITNPSHFAIGCTFHGYGVKSGLSND 387

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
            +  N +I  + R  ++  A  +F  M+    +  LITW ++ISG  Q    ++A+  F 
Sbjct: 388 CLVANGLISLYSRFDEIEAALSLFYDMR----EKPLITWNSMISGCVQAGKSSDAMELFS 443

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           EM   G KP   TI   LS C  + +LR G  +H Y++R+++ +   I T+L+DMY+KCG
Sbjct: 444 EMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYILRNNVRVEDFIGTALIDMYSKCG 503

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
            +  A++VF       L  +NA+ISGY+++GL   A   +  LQ++G+ PD ITF  +L 
Sbjct: 504 RLDYAEKVFYNIKDPCLATWNAIISGYSLYGLEHTAFGCYSKLQEQGLKPDKITFLGVLA 563

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           AC+H GLV  GLE F  M  ++ + PS++H+ C+V LL + G   EA+  I  M   PD+
Sbjct: 564 ACTHGGLVYLGLEYFNIMTKEYGLMPSLQHYACIVALLGKEGLFKEAIEFINKMEIQPDS 623

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            + G+LL+ C    E +L E +++ L  L   N G YV +SN YA  GRW++V++VR++M
Sbjct: 624 AVWGALLNACCIQREVKLGECLAKKLFLLNHKNGGFYVLMSNLYAIVGRWDDVARVREMM 683

Query: 733 KEKGLRKNPGCSWIQI 748
           K+ G     GCS + +
Sbjct: 684 KDSG---GDGCSGVSV 696



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 230/483 (47%), Gaps = 34/483 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I   S+   +  A+ L  +M   NF+        LL  C     ++ G+ IH   +K G 
Sbjct: 129 ICGYSQNGYLYHAIQLFVDMLRENFKPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAG- 187

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + ++   L+  YAKCD L+ +  LF  +  K+V SW  +IG+  + GL +KA++ F
Sbjct: 188 -FGLDSHLNNALMSMYAKCDDLEASQLLFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYF 246

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EM ++G  P +  + N++ A        F   VH YV+K GF     V +SL+ +Y K 
Sbjct: 247 KEMLKEGFHPSSVTIMNLVSA------NAFPENVHCYVVKCGFTNDASVVTSLVCLYAKQ 300

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G    A++++     ++++   ++I  Y + G  E A+  F +     ++P  V++  +L
Sbjct: 301 GFTNTAKQLYKYYPTKDLITLTAIISSYSEKGDIESAVECFIQTIQLDIKPDAVALIGVL 360

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
               N      G   H   V +G+  D ++ + +I+ YS+   +E A  +F  M E+ ++
Sbjct: 361 HGITNPSHFAIGCTFHGYGVKSGLSNDCLVANGLISLYSRFDEIEAALSLFYDMREKPLI 420

Query: 351 TWNLLIASYVQSGQSDVVV--------------ASSIVDMYAKCERIDNAK--QVFNSII 394
           TWN +I+  VQ+G+S   +              A +I  + + C ++ N +  +  +S I
Sbjct: 421 TWNSMISGCVQAGKSSDAMELFSEMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYI 480

Query: 395 LRDVV-----LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           LR+ V     +   L+  Y+  GR   A ++FY ++     P + +WN++I G+   G  
Sbjct: 481 LRNNVRVEDFIGTALIDMYSKCGRLDYAEKVFYNIK----DPCLATWNAIISGYSLYGLE 536

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTITC 508
           + A   + ++Q  G++P+ IT+  +++  T        + +F  M  E G+ PS     C
Sbjct: 537 HTAFGCYSKLQEQGLKPDKITFLGVLAACTHGGLVYLGLEYFNIMTKEYGLMPSLQHYAC 596

Query: 509 ALS 511
            ++
Sbjct: 597 IVA 599


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  331 bits (849), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 193/576 (33%), Positives = 289/576 (50%), Gaps = 55/576 (9%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R VH  ++         +   L+  Y    D+  ARKVFD +  RNV+  N MI  YV N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G   E ++VF  M    V P   +   +L A +    +  G++ H  A            
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA------------ 166

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
                  +KVGL                               S + V + +V MY KC 
Sbjct: 167 -------TKVGL------------------------------SSTLFVGNGLVSMYGKCG 189

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +  A+ V + +  RDVV WN+L+  YA   R  +A  +  +M+   IS +  +  S++ 
Sbjct: 190 FLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP 249

Query: 442 GFLRNGQMN--EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
                   N    KDMF +M     + +L++W  +I    +N+   EA+  +  M   G 
Sbjct: 250 AVSNTTTENVMYVKDMFFKMG----KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGF 305

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           +P   +IT  L AC D ++L  G+ IHGY+ R  L     +  +L+DMYAKCG + +A+ 
Sbjct: 306 EPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARD 365

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VF+   S+++  + AMIS Y   G   +A+ALF  LQ  G+ PDSI F   L ACSHAGL
Sbjct: 366 VFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGL 425

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           + EG   F  M   +++ P +EH  C+V+LL R G + EA R I  M  +P+  + G+LL
Sbjct: 426 LEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALL 485

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
             C   ++T++    ++ L QL P+  G YV LSN YA +GRW EV+ +R+IMK KGL+K
Sbjct: 486 GACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKK 545

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           NPG S +++   +H F+  DRSHP+++EIY  L +L
Sbjct: 546 NPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVL 581



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 233/507 (45%), Gaps = 48/507 (9%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D+ T + +H+RI+        N  +  KL+  YA    +  A ++F  +  +NV     +
Sbjct: 54  DIRTLRTVHSRIILED--LRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVM 111

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I      G   + +  F  M    V PD++  P VLKAC   G +  GR +HG   KVG 
Sbjct: 112 IRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGL 171

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
              +FV + L+ MYGKCG L EAR V D M  R+VV+WNS++VGY QN   ++A+ V  E
Sbjct: 172 SSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCRE 231

Query: 274 MTLEGVEPTRVSVTSILSASANLDA----------LDEGKQAH-AVAVINGMELDNVLGS 322
           M    +     ++ S+L A +N                GK++  +  V+ G+ + N +  
Sbjct: 232 MESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPV 291

Query: 323 SIINFYSKV---GLLEDAEVVFSRMV---ERDIVTWNLLIASYVQSGQ--SDVVVASSIV 374
             +  YS++   G   DA  + S +    +   ++    I  Y++  +   ++++ ++++
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 351

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
           DMYAKC  ++ A+ VF ++  RDVV W  +++AY   GR  +A  LF ++Q  G+ P+ I
Sbjct: 352 DMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSI 411

Query: 435 SWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
           ++ + +      G + E +  F L      + P L     ++  L +     EA  F Q+
Sbjct: 412 AFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQD 471

Query: 494 MLETGIKPSTTTITCALSAC-----TDVASLRNGRAIH------GYLIRHDLCLPTPIVT 542
           M    ++P+       L AC     TD+  L   +         GY +            
Sbjct: 472 M---SMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVL----------- 517

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKEL 569
            L ++YAK G   +   + +I  SK L
Sbjct: 518 -LSNIYAKAGRWEEVTNIRNIMKSKGL 543



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 12/200 (6%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EAV+L + M+   F+        +L  C     +  G++IH  I +       N  +E  
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKK--LIPNLLLENA 349

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  YAKC  L+ A  +F  ++ ++V SW A+I      G    A+  F ++Q+ G+ PD
Sbjct: 350 LIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPD 409

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA-----SSLIDMYGKCGDLEEA 236
           +      L AC   G +  GR+      K+  D           + ++D+ G+ G ++EA
Sbjct: 410 SIAFVTTLAACSHAGLLEEGRS----CFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 465

Query: 237 -RKVFDGMIARNVVAWNSMI 255
            R + D  +  N   W +++
Sbjct: 466 YRFIQDMSMEPNERVWGALL 485


>gi|297844718|ref|XP_002890240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336082|gb|EFH66499.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 213/701 (30%), Positives = 356/701 (50%), Gaps = 83/701 (11%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFS--------- 149
           +Q+HA++L + D+  R+  +    V  Y         SRL   L  +NVF          
Sbjct: 73  KQVHAQVLVS-DYIYRSGSLAANFVSVY---------SRLGLLLDARNVFETVSLVLWSD 122

Query: 150 ---WAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHG 206
              W +I+  N   GL E A   +  M+E G++ D F+LP +L+AC  LG  G  RA H 
Sbjct: 123 LRLWNSILKANVSHGLYENAFELYRGMRERGLTGDGFILPLILRACRYLGRFGLCRAFHS 182

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE 266
            V+++G    + VA+ L+ +Y K   + +A  +F  M  RN ++WN MI G+ Q    E 
Sbjct: 183 QVIQIGLKENLHVANELLTLYPKAARIGDAYNLFVEMPVRNRMSWNVMIKGFSQEFDCES 242

Query: 267 AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIIN 326
           A+++F  M  E  +P                                   D V  +S+++
Sbjct: 243 AVKIFEWMQREDFKP-----------------------------------DEVTWTSLLS 267

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNA 386
            +S+ G  ED    F  M           +++   SG++  V  S   ++ A    +  A
Sbjct: 268 CHSQCGKFEDVIKYFHVM----------RMSASAVSGEALAVFFSVCAELGA----LSIA 313

Query: 387 KQVFNSIILRD----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG 442
            +V   +I       +   N L+  Y   G+  +A +LF Q++ +GI     SWNS+I  
Sbjct: 314 DKVHGFVIKGGFEECLPSRNALIHVYGKQGKVKDAEQLFRQIRNKGIE----SWNSLITS 369

Query: 443 FLRNGQMNEAKDMFLQMQSL----GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           F+  G+++EA  +F +++ +     V+ N++TWT++I G      G+ ++ +F+ M  + 
Sbjct: 370 FVDAGKLDEALSLFTELEEMDDVCNVKANVVTWTSVIKGCNVQGRGDYSLEYFRRMQFSK 429

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           +  ++ TI C LS C ++ +L  GR IHG++IR  +     +  +LV+MY KCG + +  
Sbjct: 430 VLSNSVTICCILSICAELPALNLGREIHGHVIRTSMSDNILVQNALVNMYTKCGLLREGS 489

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
            VF+    K+L  +N++I GY MHG   +AL++F  + + G  PD I    +L+ACSHAG
Sbjct: 490 LVFEAIRDKDLISWNSIIKGYGMHGFGEKALSMFDRMIKSGCHPDGIALVAVLSACSHAG 549

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           LV +G ++F  M     ++P  EH+ C+V+LL R G L EA  ++  MP +P   ++G+L
Sbjct: 550 LVEKGRKIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGAL 609

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L++C      ++AE I+  L  LEP+  G+Y+ LSN Y+A GRW E ++VR + K+K L+
Sbjct: 610 LNSCRMHKNMDIAEIIASQLRVLEPERTGSYMLLSNIYSAGGRWEESAKVRALAKKKDLK 669

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           K  G SWI++ ++++ F +      +   IY  L  L  H+
Sbjct: 670 KVSGSSWIELKKKIYKFSSGSIVQSEFASIYPVLEDLVSHM 710


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 187/593 (31%), Positives = 316/593 (53%), Gaps = 59/593 (9%)

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            + G++E AR  F+ M  R   ++N+++ GY +N L + A+ +F  M      P+R    
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRM------PSR---- 77

Query: 288 SILSASANLDALDEGKQA--HAVAVINGMELDN--VLGSSIINFYSKVGLLEDAEVVFSR 343
            + S +A +  L   +Q    A A +  +      V  +S++  Y + GLL DA  +F +
Sbjct: 78  DLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQ 137

Query: 344 MVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQVF 390
           M ER+ V++ +L+   + +G+              DVV  ++++  Y +  RI  A+ +F
Sbjct: 138 MPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALF 197

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
           + +  R+VV W  +++ YA  G    A +LF  M       N +SW ++++G+++ G + 
Sbjct: 198 DEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVE 253

Query: 451 EAKDMFLQMQSLGV-----------QPNLI----------------TWTTLISGLTQNSC 483
           +A ++F  M    V           Q  ++                TW+ +I    QN  
Sbjct: 254 DAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEF 313

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
             EA+  F+EML  G++P+  ++   L+ C  +A L  GR +H  ++R    +    V++
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSA 373

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+ MY KCGN+ +AKRVF     K++ ++N+MI+GYA HGL  +AL +F +++  G+ PD
Sbjct: 374 LITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPD 433

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            IT+   L ACS+ G V EG E+F  M  +  ++P  EH+ C+V+LL R G ++EA  +I
Sbjct: 434 GITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLI 493

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             MP +PDA I G+L+  C      E+AE+ ++ LL+LEP N G YV LS+ Y + GRW 
Sbjct: 494 KNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWE 553

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD-RSHPKTEEIYATLALL 775
           + S++R  +  + L K+PGCSWI+  + +H+F + D  +HP+   I   L  L
Sbjct: 554 DASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKL 606



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 138/244 (56%), Gaps = 12/244 (4%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++V + +   +D A  +F ++  ++  +W+A+I    +     +AL  F EM   GV P+
Sbjct: 273 MMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPN 332

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
              + ++L  C AL  + +GR VH  +L+  FD  VF  S+LI MY KCG+L++A++VF 
Sbjct: 333 YPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFH 392

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
               +++V WNSMI GY Q+GL E+A+ +F++M L G+ P  ++    L+A +    + E
Sbjct: 393 TFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKE 452

Query: 302 GKQAHAVAVINGMELDNVLG------SSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNL 354
           G++     + N M +++ +       S +++   + GL+E+A +++ +  VE D V W  
Sbjct: 453 GRE-----IFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGA 507

Query: 355 LIAS 358
           L+ +
Sbjct: 508 LMGA 511



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 158/354 (44%), Gaps = 66/354 (18%)

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           D  V   ++++  Y + G + EAR +FD M  RNVV+W +MI GY QNG    A ++F  
Sbjct: 171 DRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEV 230

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVG 332
           M     E   VS T++L     +  +  G    A  + N M    V   ++++  + + G
Sbjct: 231 MP----ERNEVSWTAML-----VGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQ------------------------------- 361
           +++ A+ VF +M ERD  TW+ +I +Y Q                               
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 362 ---------------------SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
                                S   DV   S+++ MY KC  +D AK+VF++   +D+V+
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVM 401

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           WN+++  YA  G   +A  +F+ M+L G+SP+ I++   +      G++ E +++F  M 
Sbjct: 402 WNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMT 461

Query: 461 -SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +  ++P    ++ ++  L ++    EA    + M    ++P        + AC
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM---PVEPDAVIWGALMGAC 512



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 198/468 (42%), Gaps = 61/468 (13%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ SL + Y        +   + +A+ L  +M  RN      + G LL           G
Sbjct: 114 SFTSLLRGYV-------RHGLLADAIRLFQQMPERNHVSYTVLLGGLLDA---------G 157

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +   AR L + +   R+    T ++  Y +   +  A  LF  +  +NV SW A+I    
Sbjct: 158 RVNEARRLFD-EMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMIS--- 213

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNF-VLPNVLKACGALGWVGFGRAVH----GYVLKVGF 213
                     G+ +  E  ++   F V+P   +       VG+ +A H      +     
Sbjct: 214 ----------GYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMP 263

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           +  V   ++++  +G+ G ++ A+ VF+ M  R+   W++MI  Y QN    EA+  F E
Sbjct: 264 EHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFRE 323

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M   GV P   SV SIL+  A L  LD G++ HA  +    ++D    S++I  Y K G 
Sbjct: 324 MLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGN 383

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           L+ A+ VF     +DIV WN +I  Y Q G                    + A  +F+ +
Sbjct: 384 LDKAKRVFHTFEPKDIVMWNSMITGYAQHGLG------------------EQALGIFHDM 425

Query: 394 ILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQL-EGISPNIISWNSVILGFLRNGQ 448
            L     D + +   L A +  G+  E   +F  M +   I P    ++ ++    R+G 
Sbjct: 426 RLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGL 485

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           + EA D+   ++++ V+P+ + W  L+     +     A    +++LE
Sbjct: 486 VEEAFDL---IKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLE 530



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 139/319 (43%), Gaps = 17/319 (5%)

Query: 26  SQTHLTKLRESDN-SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGE 84
           ++T   K+ E D+ ++ ++ K+Y        + + + EA+    EM  R  +        
Sbjct: 286 AKTVFEKMCERDDGTWSAMIKAY-------EQNEFLMEALSTFREMLWRGVRPNYPSVIS 338

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  C     +  G+++HA +L+    F  + +  + L+  Y KC  LD A R+F     
Sbjct: 339 ILTVCAALAVLDYGREVHAAMLRCS--FDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP 396

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           K++  W ++I    + GL E+AL  F +M+  G+SPD       L AC   G V  GR +
Sbjct: 397 KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREI 456

Query: 205 -HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG 262
            +   +           S ++D+ G+ G +EEA  +   M +  + V W +++ G  +  
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM-GACRMH 515

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSA-SANLDALDEGKQAHAVAVINGMELDNVLG 321
            N E I  F    L  +EP       +LS    ++   ++  +      I+   L+   G
Sbjct: 516 RNAE-IAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMR--KFISSRNLNKSPG 572

Query: 322 SSIINFYSKVGLLEDAEVV 340
            S I +  +V L    +V+
Sbjct: 573 CSWIEYDKRVHLFTSGDVL 591


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 210/741 (28%), Positives = 362/741 (48%), Gaps = 94/741 (12%)

Query: 130 DALD-VASRLFCRLRVKNV-FSWAAIIGLNCRVGLSEKALIGF-VEMQEDGVSPDNFVLP 186
           D LD +  +  C ++  +   S  + I L C+     +AL  F    +   +  ++    
Sbjct: 102 DGLDEIPCQFVCLIKQHSRELSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYG 161

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           N++ AC ++  + +G+ +H ++LK      + + + +++MYGKCG L++ARK FD M  R
Sbjct: 162 NLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLR 221

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           NVV+W  MI GY QNG   +AI ++ +M   G  P  ++  SI+ A      +D G+Q H
Sbjct: 222 NVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLH 281

Query: 307 AVAVINGME-------------------------------LDNVLGSSIINFYSKVGLLE 335
              + +G +                                D +  +S+I  ++++G   
Sbjct: 282 GHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEI 341

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSG----------------------QSDVVVASSI 373
           +A  +F  M  +     N  I   V S                         +V    S+
Sbjct: 342 EALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSL 401

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
            DMYAK   + +A + F  I   D+V WN ++AA++D G   EA   F QM   G+ P+ 
Sbjct: 402 CDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDG 461

Query: 434 ISW-----------------------------------NSVILGFLRNGQMNEAKDMFLQ 458
           I++                                   NS++  + +   +++A ++F  
Sbjct: 462 ITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVF-- 519

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
            + +    NL++W  ++S   Q+    E    F+ ML +  KP   TIT  L  C ++AS
Sbjct: 520 -KDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELAS 578

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           L  G  +H + ++  L +   +   L+DMYAKCG++  A+ VF  + + ++  ++++I G
Sbjct: 579 LEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVG 638

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           YA  GL  EAL LF+ ++  G+ P+ +T+  +L+ACSH GLV EG   +  M  +  + P
Sbjct: 639 YAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPP 698

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
           + EH  C+V+LL+R G L EA   I  M  +PD  +  +LL++C      ++AE  +E++
Sbjct: 699 TREHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAENI 758

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
           L+L+P N    V LSN +A+ G W EV+++R++MK+ G++K PG SWI + +++HVF + 
Sbjct: 759 LKLDPSNSAALVLLSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAVKDQIHVFFSE 818

Query: 759 DRSHPKTEEIYATLALLGMHV 779
           D SH +  +IY  L  L + +
Sbjct: 819 DNSHQQRGDIYTMLEDLWLQM 839


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 192/614 (31%), Positives = 326/614 (53%), Gaps = 28/614 (4%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M ++G S  + +   +L  C   G +G  +A+HG+++K G    +FVA+SL+++Y +CG+
Sbjct: 69  MLKEGQSVQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGN 128

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
            ++AR +FD M  +NVV W ++I GY  N     A+ VF EM   G  P+  ++  +LSA
Sbjct: 129 SQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSA 188

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
                 +D GKQ H   +  G      +G+S+   Y+K G LE     F R+ +++++TW
Sbjct: 189 CVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITW 248

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
             +I++  +      +  +  +DM          + + N   L  V+   +L     D+ 
Sbjct: 249 TTMISACAEDENYTELGLNLFLDML-------KGEVMPNEFTLTSVM---SLCGTSLDMN 298

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
              +     +++   G + N+   NS +  +LR G+  EA  +F +M+   V    ITW 
Sbjct: 299 LGKQVQGFCFKI---GCATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSV----ITWN 351

Query: 473 TLISGLTQ-----------NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
            +ISG  Q            S G +A+  F++++ + +KP   T +  LS C+ + +L  
Sbjct: 352 AMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQ 411

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G  IH   I+        + ++LV+MY KCG I  A + F   P++ L  + +MISGY+ 
Sbjct: 412 GEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQ 471

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HG   +A+ LF+++   G  P+ ITF ++L+ACS+AGLV E +  F  M +++ ++P M+
Sbjct: 472 HGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMD 531

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+GC++++  R G LD+A   I     +P+  I  SL++ C      ELA Y ++ LL+L
Sbjct: 532 HYGCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLEL 591

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           +P     YV L N Y ++GRW +V++VR + K + L      SWI I ++++ F A DRS
Sbjct: 592 KPKVVETYVLLLNMYISTGRWRDVARVRKLSKHEDLGILRDRSWITIRDKVYFFKADDRS 651

Query: 762 HPKTEEIYATLALL 775
           HP++ E+Y  L  L
Sbjct: 652 HPQSTELYQLLETL 665



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 149/617 (24%), Positives = 279/617 (45%), Gaps = 77/617 (12%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           +EA+ +L E +     +   +Y  LL  C+    +   + +H  ++K G     + +V T
Sbjct: 64  QEAMAMLKEGQ----SVQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIV--DIFVAT 117

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG---LNCRVGLSEKALIGFVEMQEDG 177
            LV  Y +C     A  LF  +  KNV +W A+I    LN +  L   AL  FVEM + G
Sbjct: 118 SLVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLNSQPVL---ALEVFVEMLKLG 174

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
             P ++ L  +L AC A   +  G+ VHGY +K G      + +SL  +Y K G+LE   
Sbjct: 175 RYPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGI 234

Query: 238 KVFDGMIARNVVAWNSMIVGYVQN-GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           + F  +  +NV+ W +MI    ++    E  + +F +M    V P   ++TS++S     
Sbjct: 235 RAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTS 294

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
             ++ GKQ        G   +  + +S +  Y + G  E+A  +F  M +  ++TWN +I
Sbjct: 295 LDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMI 354

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLG 412
           + + Q      ++ S+  D++A+  R   A ++F  ++      D+  ++++L+  + + 
Sbjct: 355 SGFAQ------IMDSAKDDLHAR-SRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMM 407

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
              +  ++  Q    G   +++  ++++  + + G +  A   F++M +      L+TWT
Sbjct: 408 ALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPT----RTLVTWT 463

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           ++ISG +Q+   ++AI  F++M+  G KP+  T    LSAC+                  
Sbjct: 464 SMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACS------------------ 505

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE-----LPVYNAMISGYAMHGLAVE 587
                          YA  G + +A R FD+  ++      +  Y  MI  +   G   +
Sbjct: 506 ---------------YA--GLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDD 548

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL-FVGMFSDHQVKPS-MEHFGC 645
           A A  K   +KG +P+   +++++  C   G     +EL F       ++KP  +E +  
Sbjct: 549 AYAFIK---RKGFEPNEAIWSSLVAGCRSHG----NMELAFYAADRLLELKPKVVETYVL 601

Query: 646 VVNLLSRCGNLDEALRV 662
           ++N+    G   +  RV
Sbjct: 602 LLNMYISTGRWRDVARV 618


>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
 gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 218/718 (30%), Positives = 355/718 (49%), Gaps = 103/718 (14%)

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
              LQ       ++ G+Q+H    K G        +  +L+  Y +C ++  A +LF  +
Sbjct: 9   ARFLQSLNTPHSIHQGKQLHILFFKKG-LIQSTLSLANRLLQMYTRCGSMTDAHKLFDEM 67

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
             +N FSW  +I    + G  E+++  F     D +S  N                    
Sbjct: 68  PHRNCFSWNTMIEGYMKSGNKERSIRLF-----DMMSNKN-------------------- 102

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
               Y   V F G           + K G++E AR++F+ M  RN V WNSMI  Y +NG
Sbjct: 103 ---DYSWNVVFSG-----------FAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYARNG 148

Query: 263 LNEEAIRVFYEMTLEGVEPT---RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
              EA+R+F E+ L+ ++ +      + +++ A  +L  +  GKQ HA  +I+ MELD+V
Sbjct: 149 SPREAVRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIHARILIDNMELDSV 208

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERD------------------------------- 348
           L SS+IN Y K G L+ A  V + M E D                               
Sbjct: 209 LTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSC 268

Query: 349 IVTWNLLIASYVQSGQ--------SDV------VVASSIVDMYAKCERIDNA---KQVFN 391
           +V WN LI+ YV + +        +D+      V  S++  + + C  + N+   KQ+  
Sbjct: 269 VVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHA 328

Query: 392 SI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
                 ++ D V+ +  + AY+  G   +A +LF +++    + + I  NS+I  +  +G
Sbjct: 329 YACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELK----TYDTILLNSMITVYSNSG 384

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
           ++ +AK +F  M S     +LI+W ++I GL+QN C  EA+  F  M +  ++ +   +T
Sbjct: 385 KIEDAKQIFNTMPS----KSLISWNSMIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLT 440

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
             +SAC  ++SL  G  I        L     I TSLVD Y KCG I   +++FD     
Sbjct: 441 SVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTMMKS 500

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           +   +N+M+ GYA +G  +EAL LF  ++  G+ P  ITFT +L+AC H GLV EG   F
Sbjct: 501 DEISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITFTGVLSACDHCGLVKEGWRWF 560

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             M  D+ + P +EH+ C+V+L +R G L+EA+ +I  MP + DA +  S+L  C+   E
Sbjct: 561 NIMQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRMPFEADASMWSSVLRGCMAHGE 620

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
            +L E +++ +++L+P+N G YV LS+ +A SG W   + VR +M+E+ ++K PG SW
Sbjct: 621 KDLGEKVAQQIIELDPENSGAYVQLSSIFATSGDWESSALVRKVMQERQVQKYPGYSW 678



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 125/498 (25%), Positives = 215/498 (43%), Gaps = 95/498 (19%)

Query: 51  ISSLSKEKQIREAVDLLTEMK--------CRNFQIGPEIYGELLQGCVYKRDMYTGQQIH 102
           I S ++    REAV L  E+         C  F     +   ++  C    ++  G+QIH
Sbjct: 141 IHSYARNGSPREAVRLFKELNLDPLDKSCCDTF-----VLATVIGACTDLGEIQCGKQIH 195

Query: 103 ARILKNGDFFARNEYVETKLVVFYAKCDALDV---------------------------- 134
           ARIL   D    +  + + L+  Y KC  LD                             
Sbjct: 196 ARILI--DNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGR 253

Query: 135 ---ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
              A R F R     V  W ++I          +A + F +MQ+ G+  D   L  +L A
Sbjct: 254 MNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSA 313

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL------------------ 233
           C +L     G+ +H Y  KVG      VAS+ ID Y KCG L                  
Sbjct: 314 CSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTILL 373

Query: 234 -------------EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
                        E+A+++F+ M ++++++WNSMIVG  QNG   EA+ +F  M    + 
Sbjct: 374 NSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKLDLR 433

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
             R ++TS++SA A++ +L+ G+Q  A A + G++ D V+ +S+++FY K G +E    +
Sbjct: 434 MNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGRKL 493

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  M++ D ++WN ++  Y  +G                 E +    ++ ++ +    + 
Sbjct: 494 FDTMMKSDEISWNSMLMGYATNGHG--------------LEALTLFNEMRHAGVRPTEIT 539

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           +  +L+A    G   E  R F  MQ +  I P I  ++ ++  F R G + EA ++  +M
Sbjct: 540 FTGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRM 599

Query: 460 QSLGVQPNLITWTTLISG 477
                + +   W++++ G
Sbjct: 600 P---FEADASMWSSVLRG 614



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 16/262 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I  LS+     EA+DL   M   + ++       ++  C     +  G+QI AR 
Sbjct: 403 SWNSMIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARA 462

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
              G     +E + T LV FY KC  +++  +LF  +   +  SW +++      G   +
Sbjct: 463 TVVG--LDSDEVISTSLVDFYCKCGFIEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLE 520

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGAL-----GWVGFGRAVHGYVLKVGFDGCVFVA 220
           AL  F EM+  GV P       VL AC        GW  F    + Y +  G +      
Sbjct: 521 ALTLFNEMRHAGVRPTEITFTGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEH----Y 576

Query: 221 SSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG---LNEEAIRVFYEMTL 276
           S ++D++ + G LEEA  +   M    +   W+S++ G + +G   L E+  +   E+  
Sbjct: 577 SCMVDLFARAGCLEEAMNLIKRMPFEADASMWSSVLRGCMAHGEKDLGEKVAQQIIELDP 636

Query: 277 EGVEPTRVSVTSILSASANLDA 298
           E      V ++SI + S + ++
Sbjct: 637 EN-SGAYVQLSSIFATSGDWES 657


>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  330 bits (847), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 202/653 (30%), Positives = 338/653 (51%), Gaps = 105/653 (16%)

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC------------ 230
             L + LK+C +L  +  G+ +H  V K G    +FV +SLI  Y KC            
Sbjct: 53  LTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDT 112

Query: 231 -------------------GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
                              G L+ AR +F+ M  +  V++ +M++G  QN    EAI VF
Sbjct: 113 CSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVF 172

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
            +M   GV P  V++ S++SA +++  +   +  HA++   G+E  N++ +++++ Y   
Sbjct: 173 KDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVC 232

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYA 378
             L +A V+F  + ER++VTWN+++  Y +SG               DVV   +I+D Y 
Sbjct: 233 SSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYV 292

Query: 379 KCERIDNAKQVF----------NSIILRDVV----------------------------- 399
           + ER+  A +++          N +++ D++                             
Sbjct: 293 QIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDF 352

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           +  T++  YA     GE +  F Q +L G   ++ SWN++I GF+RNG + +A+ +F +M
Sbjct: 353 IQATIIHFYA---ACGEINLAFLQFEL-GSKDHVSSWNALISGFVRNGMIEQARQLFDEM 408

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
                + ++ +W+++ISG +QN   + A+  F EM+  G++P+  T+    SA   + +L
Sbjct: 409 P----ERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTL 464

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA--------KRVFDISPSKELPV 571
             GR  H Y++ + + L   +  +L+DMYAKCG+I  A         RV  +SP      
Sbjct: 465 MEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSP------ 518

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           +NA+I G AMHG A  +L LF  LQ+  I P+SITF  +L+AC HAGLV+ G + F GM 
Sbjct: 519 WNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMK 578

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
           + + ++P+++H+GC+++LL R G L EA  +I  MP   D  I G+LL+ C      E+ 
Sbjct: 579 NLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIG 638

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
           E  +E+L +L+  +    V LSN YA +GRW++   VR  M+ + ++K+PGCS
Sbjct: 639 ERAAENLAKLDISHGAGRVLLSNIYADAGRWDDAFLVRRAMQSQRMKKSPGCS 691



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 147/607 (24%), Positives = 257/607 (42%), Gaps = 141/607 (23%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC---------------- 129
           L+ C     +  GQQIH+ + K+G     N +V+  L+ FY KC                
Sbjct: 59  LKSCSSLLALSQGQQIHSLVFKSG--LLSNIFVKNSLISFYVKCRLISNARSLFDTCSVL 116

Query: 130 ---------------DALDVASRLFCRLRVKNVFSWAAII-GL---NCRVGLSEKALIGF 170
                           +LD A  LF ++ +K   S+  ++ GL   NC +    +A+  F
Sbjct: 117 DPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWL----EAIGVF 172

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M+  GV P+   L +V+ A   +G +   R +H    K+G +    VA++L+ MY  C
Sbjct: 173 KDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVC 232

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE------------------------- 265
             L  AR +FD +  RNVV WN M+ GY ++GL +                         
Sbjct: 233 SSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYV 292

Query: 266 ------EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
                 EA+R++  M   GV P  V +  ++SA     A+ EG+Q H + V  G +  + 
Sbjct: 293 QIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDF 352

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           + ++II+FY+  G +  A + F    +  + +WN LI+ +V++G                
Sbjct: 353 IQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGM--------------- 397

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              I+ A+Q+F+ +  RDV  W+++++ Y+   +   A +LF++M   G+ PN I+  SV
Sbjct: 398 ---IEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSV 454

Query: 440 I-----LGFLRNGQ----------------MNEAK-DMFLQMQSLGVQPNLI-------- 469
                 LG L  G+                +N A  DM+ +  S+ +   L         
Sbjct: 455 FSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVS 514

Query: 470 ---TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
               W  +I GL  +   N ++  F ++    IKP++ T    LSAC     +  G    
Sbjct: 515 SVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYF 574

Query: 527 GYL---------IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMI 576
             +         I+H  C        ++D+  + G + +A  +    P K ++ ++  ++
Sbjct: 575 KGMKNLYNIEPNIKHYGC--------MIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLL 626

Query: 577 SGYAMHG 583
           +    HG
Sbjct: 627 AACRTHG 633



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 43/245 (17%)

Query: 490 FFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
           FF    +T       T+  AL +C+ + +L  G+ IH  + +  L     +  SL+  Y 
Sbjct: 39  FFNGNKDTQHSDYELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYV 98

Query: 550 KC-------------------------------GNIHQAKRVFDISPSKELPVYNAMISG 578
           KC                               G++  A+ +F+  P K    Y  M+ G
Sbjct: 99  KCRLISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMG 158

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH-AGLVN----EGLELFVGMFSD 633
            A +   +EA+ +FK+++  G+ P+ +T  ++++A SH  G++N      L   +G+ + 
Sbjct: 159 LAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEAL 218

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           + V  ++ H  CV      C +L  A RV+     + +      +L+   KS   +LA  
Sbjct: 219 NIVATNLVHMYCV------CSSLGNA-RVLFDEIPERNVVTWNVMLNGYSKSGLVDLARD 271

Query: 694 ISEHL 698
           + E +
Sbjct: 272 LFERI 276


>gi|357495605|ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519426|gb|AET01050.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 217/726 (29%), Positives = 356/726 (49%), Gaps = 98/726 (13%)

Query: 151 AAIIGLNCRVGLSEKALIGFVEMQEDGVSP--DNFVLPNVLKACGALGWVGFGRAVHGYV 208
           + IIG  C   L  +AL+ + +M+ +      D +   + LKAC     +  G+A+H + 
Sbjct: 85  SVIIGFICN-NLPHQALLLYAKMRSNSSCSTFDPYTFSSTLKACALTKDILTGKAIHSHF 143

Query: 209 LK----VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           L+            V +SL++MY  C   E A  VFD M  RNVVAWN++I+ +V+    
Sbjct: 144 LRSHSNTNTGPSRIVYNSLLNMYASCQH-EYALNVFDVMRRRNVVAWNTLILSFVKMNRY 202

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL--DNVLGS 322
            +A+  F  M  + V P+ V+  ++  A + L      K  +      G +   D  + S
Sbjct: 203 PQAVEAFANMINQSVMPSPVTFVNLFPALSKLGDSRTVKMFYGFMRKFGDQYVSDVFVVS 262

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV-------------QSGQSD--- 366
           S I  +S VG ++ A +VF R + ++   WN +I +YV             Q+ +S+   
Sbjct: 263 SAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIVAYVQNNCPVEAIDVFIQALESEEGV 322

Query: 367 -------------------------------------VVVASSIVDMYAKCERIDNAKQV 389
                                                +++ ++++ MY++C  +D + +V
Sbjct: 323 CDDVTLLSVLTAVSQLQQIKLAEQFHAFVIKSLPGSLIIILNAVMVMYSRCNHVDTSLKV 382

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF--LRN- 446
           F+ ++ RD V WNT+++A+   G   EA  L  +MQ +    + ++  +++     LRN 
Sbjct: 383 FDKMLERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAASNLRNL 442

Query: 447 --GQMNEAKDMFLQMQSLGVQPNLI---------------------------TWTTLISG 477
             G+   A  +   +Q  G++  LI                           TW  +I+G
Sbjct: 443 YVGKQTHAYLIRRGIQFEGMESYLIDMYAKSGSIRTAELLFEQNCSSDRDQATWNAIIAG 502

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
            TQN    +AIL  ++ML   + P+  T+   L AC+ + S+   R +HG+ IR  L   
Sbjct: 503 YTQNGLNEKAILLLKQMLVQNVIPNAVTLASILPACSSMGSMGLARQLHGFSIRRFLEKN 562

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             + TSL D Y+KCG I  A+ VF  +P K    Y  M+  Y  HG+   AL L+ ++ +
Sbjct: 563 VYVGTSLTDTYSKCGAISYAENVFLRTPEKNSVTYTTMMMCYGQHGMGKRALTLYDSMLR 622

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
            GI PD++TF  IL+AC+++GLV+EGL++F  M   H++KPS+EH+ CV ++L R G + 
Sbjct: 623 SGIRPDAVTFVAILSACNYSGLVDEGLQIFESMEKVHKIKPSIEHYCCVADMLGRVGRVV 682

Query: 658 EALRVILTMPCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDN--PGNYVALSN 714
           EA   +  +  D +   I GSLL +C      EL + +++ LL +  D    G +V LSN
Sbjct: 683 EAYEFVKGLGEDANTMEIWGSLLGSCRNHGHFELGKAVAKKLLNMGMDKRMAGYHVLLSN 742

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            YA  G W +V +VR  MKEKGL K  GCSW++I   ++ FV+ D  HP++ EIY  L +
Sbjct: 743 IYAEEGEWEKVDRVRKQMKEKGLHKETGCSWVEIAGFVNCFVSRDEKHPQSSEIYYMLDM 802

Query: 775 LGMHVR 780
           L + ++
Sbjct: 803 LTLDMK 808



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/558 (24%), Positives = 258/558 (46%), Gaps = 27/558 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I S  K  +  +AV+    M  ++    P  +  L        D  T +  +  + K GD
Sbjct: 193 ILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLGDSRTVKMFYGFMRKFGD 252

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            +  + +V +  ++ ++    +D A  +F R   KN   W  +I    +     +A+  F
Sbjct: 253 QYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIVAYVQNNCPVEAIDVF 312

Query: 171 VEM--QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
           ++    E+GV  D+  L +VL A   L  +      H +V+K      + + ++++ MY 
Sbjct: 313 IQALESEEGVC-DDVTLLSVLTAVSQLQQIKLAEQFHAFVIKSLPGSLIIILNAVMVMYS 371

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           +C  ++ + KVFD M+ R+ V+WN++I  +VQNG +EEA+ +  EM  +      V+ T+
Sbjct: 372 RCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATA 431

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV--E 346
           +LSA++NL  L  GKQ HA  +  G++ +  + S +I+ Y+K G +  AE++F +    +
Sbjct: 432 LLSAASNLRNLYVGKQTHAYLIRRGIQFEG-MESYLIDMYAKSGSIRTAELLFEQNCSSD 490

Query: 347 RDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
           RD  TWN +IA Y Q+G ++              + I   KQ+    ++ + V   ++L 
Sbjct: 491 RDQATWNAIIAGYTQNGLNE--------------KAILLLKQMLVQNVIPNAVTLASILP 536

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
           A + +G  G A +L        +  N+    S+   + + G ++ A+++FL+      + 
Sbjct: 537 ACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTP----EK 592

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
           N +T+TT++    Q+  G  A+  +  ML +GI+P   T    LSAC     +  G  I 
Sbjct: 593 NSVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVAILSACNYSGLVDEGLQIF 652

Query: 527 GYLIR-HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD--ISPSKELPVYNAMISGYAMHG 583
             + + H +         + DM  + G + +A          +  + ++ +++     HG
Sbjct: 653 ESMEKVHKIKPSIEHYCCVADMLGRVGRVVEAYEFVKGLGEDANTMEIWGSLLGSCRNHG 712

Query: 584 LAVEALALFKNLQQKGID 601
                 A+ K L   G+D
Sbjct: 713 HFELGKAVAKKLLNMGMD 730



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 142/277 (51%), Gaps = 7/277 (2%)

Query: 31  TKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCV 90
           T L+  D   E    S+   IS+  +     EA+ L+ EM+ + F I       LL    
Sbjct: 378 TSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAAS 437

Query: 91  YKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF---CRLRVKNV 147
             R++Y G+Q HA +++ G  F   E +E+ L+  YAK  ++  A  LF   C    ++ 
Sbjct: 438 NLRNLYVGKQTHAYLIRRGIQF---EGMESYLIDMYAKSGSIRTAELLFEQNCS-SDRDQ 493

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGY 207
            +W AII    + GL+EKA++   +M    V P+   L ++L AC ++G +G  R +HG+
Sbjct: 494 ATWNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLASILPACSSMGSMGLARQLHGF 553

Query: 208 VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267
            ++   +  V+V +SL D Y KCG +  A  VF     +N V + +M++ Y Q+G+ + A
Sbjct: 554 SIRRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTPEKNSVTYTTMMMCYGQHGMGKRA 613

Query: 268 IRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
           + ++  M   G+ P  V+  +ILSA      +DEG Q
Sbjct: 614 LTLYDSMLRSGIRPDAVTFVAILSACNYSGLVDEGLQ 650



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 197/432 (45%), Gaps = 60/432 (13%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM----TLEGVEPTRVSV 286
           G    A  + D +   + V WNS+I+G++ N L  +A+ ++ +M    +    +P   + 
Sbjct: 63  GQPHLALHLLDSLPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDP--YTF 120

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDN----VLGSSIINFYSKVGLLEDAEVVFS 342
           +S L A A    +  GK  H+  + +    +     ++ +S++N Y+     E A  VF 
Sbjct: 121 SSTLKACALTKDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASCQ-HEYALNVFD 179

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV---- 398
            M  R++V WN LI S+V                  K  R   A + F ++I + V    
Sbjct: 180 VMRRRNVVAWNTLILSFV------------------KMNRYPQAVEAFANMINQSVMPSP 221

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEG--ISPNIISWNSVILGFLRNGQMNEAKDMF 456
           V +  L  A + LG S      +  M+  G     ++   +S IL F   G M+ A+ +F
Sbjct: 222 VTFVNLFPALSKLGDSRTVKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVF 281

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET--GIKPSTTTITCALSACT 514
            +     +  N   W T+I    QN+C  EAI  F + LE+  G+    T ++  L+A +
Sbjct: 282 DRC----LNKNTEIWNTMIVAYVQNNCPVEAIDVFIQALESEEGVCDDVTLLS-VLTAVS 336

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTP---IVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
            +  ++     H ++I+    LP     I+ +++ MY++C ++  + +VFD    ++   
Sbjct: 337 QLQQIKLAEQFHAFVIK---SLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVS 393

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS-----------HAGLV 620
           +N +IS +  +G   EAL L   +Q++    DS+T T +L+A S           HA L+
Sbjct: 394 WNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLI 453

Query: 621 NEGLELFVGMFS 632
             G++ F GM S
Sbjct: 454 RRGIQ-FEGMES 464


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 193/576 (33%), Positives = 289/576 (50%), Gaps = 55/576 (9%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R VH  ++         +   L+  Y    D+  ARKVFD +  RNV+  N MI  YV N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G   E ++VF  M    V P   +   +L A +    +  G++ H  A            
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA------------ 166

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
                  +KVGL                               S + V + +V MY KC 
Sbjct: 167 -------TKVGL------------------------------SSTLFVGNGLVSMYGKCG 189

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +  A+ V + +  RDVV WN+L+  YA   R  +A  +  +M+   IS +  +  S++ 
Sbjct: 190 FLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP 249

Query: 442 GFLRNGQMN--EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
                   N    KDMF +M     + +L++W  +I    +N+   EA+  +  M   G 
Sbjct: 250 AVSNTTTENVMYVKDMFFKMG----KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGF 305

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           +P   +IT  L AC D ++L  G+ IHGY+ R  L     +  +L+DMYAKCG + +A+ 
Sbjct: 306 EPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARD 365

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VF+   S+++  + AMIS Y   G   +A+ALF  LQ  G+ PDSI F   L ACSHAGL
Sbjct: 366 VFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGL 425

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           + EG   F  M   +++ P +EH  C+V+LL R G + EA R I  M  +P+  + G+LL
Sbjct: 426 LEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALL 485

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
             C   ++T++    ++ L QL P+  G YV LSN YA +GRW EV+ +R+IMK KGL+K
Sbjct: 486 GACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKK 545

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           NPG S +++   +H F+  DRSHP+++EIY  L +L
Sbjct: 546 NPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVL 581



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 233/507 (45%), Gaps = 48/507 (9%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D+ T + +H+RI+        N  +  KL+  YA    +  A ++F  +  +NV     +
Sbjct: 54  DIRTLRTVHSRIILED--LRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVM 111

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I      G   + +  F  M    V PD++  P VLKAC   G +  GR +HG   KVG 
Sbjct: 112 IRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGL 171

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
              +FV + L+ MYGKCG L EAR V D M  R+VV+WNS++VGY QN   ++A+ V  E
Sbjct: 172 SSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCRE 231

Query: 274 MTLEGVEPTRVSVTSILSASANLDA----------LDEGKQAH-AVAVINGMELDNVLGS 322
           M    +     ++ S+L A +N                GK++  +  V+ G+ + N +  
Sbjct: 232 MESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPV 291

Query: 323 SIINFYSKV---GLLEDAEVVFSRMV---ERDIVTWNLLIASYVQSGQ--SDVVVASSIV 374
             +  YS++   G   DA  + S +    +   ++    I  Y++  +   ++++ ++++
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 351

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
           DMYAKC  ++ A+ VF ++  RDVV W  +++AY   GR  +A  LF ++Q  G+ P+ I
Sbjct: 352 DMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSI 411

Query: 435 SWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
           ++ + +      G + E +  F L      + P L     ++  L +     EA  F Q+
Sbjct: 412 AFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQD 471

Query: 494 MLETGIKPSTTTITCALSAC-----TDVASLRNGRAIH------GYLIRHDLCLPTPIVT 542
           M    ++P+       L AC     TD+  L   +         GY +            
Sbjct: 472 M---SMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVL----------- 517

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKEL 569
            L ++YAK G   +   + +I  SK L
Sbjct: 518 -LSNIYAKAGRWEEVTNIRNIMKSKGL 543



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 12/200 (6%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EAV+L + M+   F+        +L  C     +  G++IH  I +       N  +E  
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKK--LIPNLLLENA 349

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  YAKC  L+ A  +F  ++ ++V SW A+I      G    A+  F ++Q+ G+ PD
Sbjct: 350 LIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPD 409

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA-----SSLIDMYGKCGDLEEA 236
           +      L AC   G +  GR+      K+  D           + ++D+ G+ G ++EA
Sbjct: 410 SIAFVTTLAACSHAGLLEEGRS----CFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 465

Query: 237 -RKVFDGMIARNVVAWNSMI 255
            R + D  +  N   W +++
Sbjct: 466 YRFIQDMSMEPNERVWGALL 485


>gi|242041975|ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
 gi|241922236|gb|EER95380.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
          Length = 1026

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 221/786 (28%), Positives = 367/786 (46%), Gaps = 99/786 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQG----CVYKRDMYTGQQI 101
           S+   +S  S     REAV+ L EM+    Q G       L G    C    D   G  +
Sbjct: 207 SWNAMVSGYSVNGCFREAVETLQEMQ----QCGMSPNASTLVGIVGMCGSAGDRVAGDSL 262

Query: 102 HARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG 161
           HA  LK G     +E + + L+  YA  D L  +  +F    VK++ S+ ++I    +  
Sbjct: 263 HAFALKGGTI--DDESLTSALISMYAAFDDLSSSRLVFDLQPVKDLVSFNSMISAYMQHS 320

Query: 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW-VGFGRAVHGYVLKVGFDGCVFVA 220
             ++A   F  M   GV P+   L +VL +C  L + +  G +VHG ++K+G    V V 
Sbjct: 321 NWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSDLLFGINHGESVHGMIIKLGLAEQVSVV 380

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           S+L+ MY K G L+ +  +F     +N + WNSMI GY+ N     A+  F +M + GV 
Sbjct: 381 SALVSMYSKLGKLDSSSLLFCCFTEKNNILWNSMISGYLVNNEWNMALDAFCKMQIAGVA 440

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P   +V +++S       L   K  HA AV N  E    + ++++  Y+  G +  +  +
Sbjct: 441 PDATTVINVISGCRYTKDLHVAKSIHAYAVRNRFESYQSVMNALLAMYADCGDISTSYTL 500

Query: 341 FSRMVERDIVTWNLLIASYVQSGQS----------------------------------- 365
           F +M  R +++WN +I+ + + G S                                   
Sbjct: 501 FQKMEVRMLISWNTMISGFAEIGDSETSLTLFCQMFHEEVWFDLVTLIGLISSLSVSEDA 560

Query: 366 -----------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                            DV + ++++ MYA C  ++  +Q+FNS   R+ + +N L++ Y
Sbjct: 561 IVGESVHSLAIKSGCISDVSLTNALITMYANCGIVEAGQQLFNSFCSRNTITYNALMSGY 620

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIIS--------------------------------W 436
                S +   LF QM      PN+++                                +
Sbjct: 621 RKNNVSEKILPLFTQMVKNDEKPNLVTLLNLLPVCQSQLQGKCIHSYAVRNFTRLETPLF 680

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
            S +  + R   +   + +F    SL    NLI W   +S   Q    +  + +F+ ML 
Sbjct: 681 TSAMGMYSRFNNIEYCRTIF----SLVSARNLIVWNAFLSACVQCKQADMVVDYFKHMLF 736

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
             ++P   T+   +SAC+ + +      I   +++    +   ++ +L+D +++CG+I  
Sbjct: 737 LNVRPDEVTMLALISACSQLGNADFAACIMAVILQKGFSMNILVLNALIDTHSRCGSISF 796

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A+ +FD S  K+   + AMI+ Y+MHG    AL LF  +   G+DPD ITF +IL+ACSH
Sbjct: 797 ARELFDSSVEKDSVTWGAMINAYSMHGNGEAALDLFSMMIDSGVDPDDITFVSILSACSH 856

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            GLV +G  LF  + +DH + P MEH+ C+V+LL R G+LDEA  ++ +MP  P  +++ 
Sbjct: 857 NGLVEQGRTLFKSLQADHGITPRMEHYACMVDLLGRTGHLDEAYDIVRSMPFTPSDNLLE 916

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           SLL  C      ++ E + + L++ E     +YV LSN YA++G+W++  Q+R  M+ KG
Sbjct: 917 SLLGACRFHGNYKIGESVGKLLIKSEYGKSRSYVMLSNIYASAGKWSDCEQLRLDMEAKG 976

Query: 737 LRKNPG 742
           LRKN G
Sbjct: 977 LRKNVG 982



 Score =  216 bits (549), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 182/746 (24%), Positives = 327/746 (43%), Gaps = 138/746 (18%)

Query: 61  REAVDL---LTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEY 117
           RE +DL   L      NF   P     +++ C     +  G+Q+H R+L+ G     N  
Sbjct: 123 RELLDLYRGLCGFGSDNFTFPP-----VIRACTAASCLQLGRQVHCRVLRTGH--GSNVG 175

Query: 118 VETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177
           V+T L+  YAK   +DV+ R+F  + ++++ SW A++      G   +A+    EMQ+ G
Sbjct: 176 VQTALLDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFREAVETLQEMQQCG 235

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           +SP+   L  ++  CG+ G    G ++H + LK G      + S+LI MY    DL  +R
Sbjct: 236 MSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTSALISMYAAFDDLSSSR 295

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL-SASANL 296
            VFD    +++V++NSMI  Y+Q+   +EA  VF  M   GV P  +++ S+L S S  L
Sbjct: 296 LVFDLQPVKDLVSFNSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSDLL 355

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
             ++ G+  H + +  G+     + S++++ YSK+G L+ + ++F    E++ + WN +I
Sbjct: 356 FGINHGESVHGMIIKLGLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKNNILWNSMI 415

Query: 357 ASYVQSGQ---------------------------------SDVVVASSI---------- 373
           + Y+ + +                                  D+ VA SI          
Sbjct: 416 SGYLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVRNRFE 475

Query: 374 ---------VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
                    + MYA C  I  +  +F  + +R ++ WNT+++ +A++G S  +  LF QM
Sbjct: 476 SYQSVMNALLAMYADCGDISTSYTLFQKMEVRMLISWNTMISGFAEIGDSETSLTLFCQM 535

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI--------------- 469
             E +  ++++    ++G + +  ++E   +   + SL ++   I               
Sbjct: 536 FHEEVWFDLVT----LIGLISSLSVSEDAIVGESVHSLAIKSGCISDVSLTNALITMYAN 591

Query: 470 --------------------TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
                               T+  L+SG  +N+   + +  F +M++   KP+  T+   
Sbjct: 592 CGIVEAGQQLFNSFCSRNTITYNALMSGYRKNNVSEKILPLFTQMVKNDEKPNLVTLLNL 651

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L  C    S   G+ IH Y +R+   L TP+ TS + MY++  NI   + +F +  ++ L
Sbjct: 652 LPVCQ---SQLQGKCIHSYAVRNFTRLETPLFTSAMGMYSRFNNIEYCRTIFSLVSARNL 708

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG----------- 618
            V+NA +S       A   +  FK++    + PD +T   +++ACS  G           
Sbjct: 709 IVWNAFLSACVQCKQADMVVDYFKHMLFLNVRPDEVTMLALISACSQLGNADFAACIMAV 768

Query: 619 LVNEGLEL-------------------FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           ++ +G  +                   F     D  V+     +G ++N  S  GN + A
Sbjct: 769 ILQKGFSMNILVLNALIDTHSRCGSISFARELFDSSVEKDSVTWGAMINAYSMHGNGEAA 828

Query: 660 LRVILTM---PCDPDAHIIGSLLSTC 682
           L +   M     DPD     S+LS C
Sbjct: 829 LDLFSMMIDSGVDPDDITFVSILSAC 854


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 210/696 (30%), Positives = 342/696 (49%), Gaps = 85/696 (12%)

Query: 170 FVEMQEDGVSPD--NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
           F+  +    SP+   ++  ++L++C   G    G+ +H  ++K G    +F  + L++ Y
Sbjct: 30  FLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFY 89

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            K   L +A K+FD M  RN V++ ++I GY Q     EAI +F  +  EG E      +
Sbjct: 90  VKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFS 149

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           ++L    + +    G   HA     G + D  +G+++I+ YS  G  E A  VF  +  +
Sbjct: 150 TVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYK 209

Query: 348 DIVTWNLLIASYVQ---------------------------------------------- 361
           D+V+W  ++A YV+                                              
Sbjct: 210 DMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVH 269

Query: 362 ------SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                 S   ++ V   ++D+Y K   +D+A QVF  +   DV+ W+ ++A YA   +S 
Sbjct: 270 GCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSE 329

Query: 416 EASRLFYQMQLEGISPNIISWNSVI----------LG----------------FLRNGQM 449
           EA  +F +M+   + PN  +  S++          LG                F+ N  M
Sbjct: 330 EAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALM 389

Query: 450 N---EAKDMFLQMQSLGVQPNL--ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
           +   +   M   +Q     PN   ++W T+I G  Q   G +A++ F++MLE  ++ +  
Sbjct: 390 DMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEV 449

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           T +  L AC  +A+L  G  IH   ++      T +  +L+DMYAKCGNI  A+ VFD+ 
Sbjct: 450 TYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDML 509

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
              +   +NAMISGY++HGL  EAL  F+++ +    PD +TF  IL+ACS+AGL++ G 
Sbjct: 510 REHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQ 569

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
             F  M  ++ ++P  EH+ C+V LL R G+LD+A +++  +P +P   +  +LLS CV 
Sbjct: 570 AYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVI 629

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
            N+ EL    ++ +L++EP++   +V LSN YA + RW  V+ +R  MK KG+RK PG S
Sbjct: 630 HNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLS 689

Query: 745 WIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           WI+    +H F   D SHP T+ I   L  L M  R
Sbjct: 690 WIENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKAR 725



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 236/485 (48%), Gaps = 28/485 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I   S+  +  EA+ L + ++    ++ P ++  +L+  V       G  +HA +
Sbjct: 112 SFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACV 171

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            K G  F  + +V T L+  Y+ C   + A ++F  +  K++ SW  ++         E+
Sbjct: 172 YKLG--FDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEE 229

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           +L  F  M+  G  P+NF   +VLKAC  L     G+AVHG   K  +   +FV   LID
Sbjct: 230 SLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELID 289

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +Y K GD+++A +VF+ M   +V+ W+ MI  Y Q+  +EEAI +F  M    V P + +
Sbjct: 290 LYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFT 349

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           + S+L A A+L  L  G Q H   V  G++++  + +++++ Y+K G +E++  +FS   
Sbjct: 350 LASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESP 409

Query: 346 ERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQ 388
               V+WN +I  YVQ+G                 Q   V  SS++   A    ++   Q
Sbjct: 410 NCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQ 469

Query: 389 VFN----SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
           + +    +I  ++ V+ N L+  YA  G   +A RL + M  E    + +SWN++I G+ 
Sbjct: 470 IHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDA-RLVFDMLRE---HDQVSWNAMISGYS 525

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPST 503
            +G   EA   F  M     +P+ +T+  ++S  +     +    +F+ M+E   I+P  
Sbjct: 526 VHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCA 585

Query: 504 TTITC 508
              TC
Sbjct: 586 EHYTC 590


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 202/671 (30%), Positives = 323/671 (48%), Gaps = 93/671 (13%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKC--GDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
            H   +K+G    ++  ++++  Y +C  G L  A  +FD M  R+ V WN+MI GYV +
Sbjct: 21  THCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNS 80

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G    A  ++  M   G+ P   +  SIL   A    LD G+Q H++ V  G E     G
Sbjct: 81  GSLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAG 140

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------ 363
           S++++ Y+K   + DA +VF  +  R+ V+WN LIA +V  G                  
Sbjct: 141 SALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVR 200

Query: 364 ----------------------------------QSDVVVASSIVDMYAKCERIDNAKQV 389
                                             Q D  V ++ +  Y++C  +++A++V
Sbjct: 201 LDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERV 260

Query: 390 FNSII-LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW------------ 436
           F+  +  RD+V WN++LAA+    R   A +LF  MQ  G  P+I ++            
Sbjct: 261 FDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHKDN 320

Query: 437 --------------------NSVILGFLRNGQ--MNEAKDMFLQMQSLGVQPNLITWTTL 474
                               N+VI  +L +    M +A ++F  M+S     + ++W ++
Sbjct: 321 GKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMES----KDRVSWNSI 376

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           ++G +Q      A+  F  M    +       +  L +C+D+A+L+ G+ IH   ++   
Sbjct: 377 LTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGF 436

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
                + +SL+ MY+KCG I  A++ F+ +       +N+++  YA HG    AL LF  
Sbjct: 437 ESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQHGQGDVALGLFFQ 496

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           ++ K +  D ITF   L ACSH GLV +G  L   M SD+ + P MEH+ C V+L  R G
Sbjct: 497 MRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAG 556

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            LDEA  +I +MP DPDA +  +LL  C    + ELA  ++ HLL+LEP+    YV LSN
Sbjct: 557 YLDEAKALIESMPFDPDAMVWKTLLGACRACGDIELAAQVASHLLELEPEEHCTYVILSN 616

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            Y    RW+E + +  +M+E+ ++K PG SWI++  E+H F+A DR H   EEIY  L  
Sbjct: 617 MYGHLKRWDEKACMARLMRERKVKKVPGWSWIEVKNEVHAFIADDRCHSHFEEIYQILEQ 676

Query: 775 LGMHVRLVSKV 785
           L   ++ +  V
Sbjct: 677 LMEDIKWLDSV 687



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 133/529 (25%), Positives = 226/529 (42%), Gaps = 107/529 (20%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKN 108
           IS       +  A +L   MK  +F + P+ Y  G +L+G      +  GQQ+H+ I+K 
Sbjct: 74  ISGYVNSGSLGSAWELYKSMK--SFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKM 131

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G  +  + Y  + L+  YAKC+ +  A  +F  +  +N  SW A+I      G  + A  
Sbjct: 132 G--YEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFW 189

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
               M+E+GV  D+     +L       +      +H  ++K G      V ++ I  Y 
Sbjct: 190 LLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYS 249

Query: 229 KCGDLEEARKVFDGMI-ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
           +CG LE+A +VFDG + +R++V WNSM+  ++ +   E A ++F +M   G EP   + T
Sbjct: 250 QCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYT 309

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY--SKVGLLEDAEVVFSRMV 345
           +I+SA ++    D GK  H + +  G+E    + +++I  Y  S    +EDA  VF  M 
Sbjct: 310 TIISACSH---KDNGKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSME 366

Query: 346 ERDIVTWNLLIASYVQSGQS---------------------------------------- 365
            +D V+WN ++  + Q+G S                                        
Sbjct: 367 SKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQ 426

Query: 366 -------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                        D V +S I  MY+KC  I++A++ F        + WN+++ AYA  G
Sbjct: 427 IHVLTVKSGFESNDFVASSLIF-MYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQHG 485

Query: 413 RSGEASRLFYQMQLE------------------------------------GISPNIISW 436
           +   A  LF+QM+ +                                    GISP +  +
Sbjct: 486 QGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHY 545

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
              +  F R G ++EAK +   ++S+   P+ + W TL+      +CG+
Sbjct: 546 ACAVDLFGRAGYLDEAKAL---IESMPFDPDAMVWKTLLGAC--RACGD 589


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 202/668 (30%), Positives = 325/668 (48%), Gaps = 96/668 (14%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           +++H  ++K       F+A+ LI +Y   G L  AR VFD          N+MI G+++N
Sbjct: 64  KSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRN 123

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE--GKQAHAVAVINGMELDNV 319
             + E  R+F  M    +E    S T + +  A  D LD+  G +    AV  G  L   
Sbjct: 124 QQHMEVPRLFRMMGSCDIEIN--SYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLY 181

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------- 363
           +GSS++NF  K G L DA+ VF  M E+D+V WN +I  YVQ G                
Sbjct: 182 VGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGG 241

Query: 364 ------------------------------------QSDVVVASSIVDMYAKCERIDNAK 387
                                                +DV V +S+VDMY+      +A 
Sbjct: 242 LRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAA 301

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG------------------- 428
            VF+S+  R ++ WN +++ Y   G   E+  LF ++   G                   
Sbjct: 302 LVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTS 361

Query: 429 ----------------ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
                           +  +++   +++  + + G + +A  +F +M     + N+ITWT
Sbjct: 362 DLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMG----KKNVITWT 417

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
            ++ GL+QN    +A+  F +M E  +  ++ T+   +  C  + SL  GR +H + IRH
Sbjct: 418 AMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRH 477

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-KELPVYNAMISGYAMHGLAVEALAL 591
                  I ++L+DMYAKCG IH A+++F+     K++ + N+MI GY MHG    AL +
Sbjct: 478 GYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGV 537

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           +  + ++ + P+  TF ++L ACSH+GLV EG  LF  M  DH V+P  +H+ C+V+L S
Sbjct: 538 YSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHS 597

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G L+EA  ++  MP  P   ++ +LLS C     T +   I++ L+ L+  N G YV 
Sbjct: 598 RAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVM 657

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
           LSN YA + +W  V+ +R +M+ +G++K PG S I++G +++ F A D SHP   +IY  
Sbjct: 658 LSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQL 717

Query: 772 LALLGMHV 779
           L  L + V
Sbjct: 718 LENLRLEV 725



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 16/198 (8%)

Query: 54  LSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFA 113
           LS+     +A+ L  +M+             L+  C +   +  G+ +HA  +++G  +A
Sbjct: 423 LSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHG--YA 480

Query: 114 RNEYVETKLVVFYAKCDALDVASRLF-CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
            +  + + L+  YAKC  +  A +LF     +K+V    ++I      G    AL  +  
Sbjct: 481 FDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSR 540

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-------HGYVLKVGFDGCVFVASSLID 225
           M E+ + P+     ++L AC   G V  G+A+       H    +     C      L+D
Sbjct: 541 MIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYAC------LVD 594

Query: 226 MYGKCGDLEEARKVFDGM 243
           ++ + G LEEA ++   M
Sbjct: 595 LHSRAGRLEEADELVKQM 612


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 198/590 (33%), Positives = 316/590 (53%), Gaps = 33/590 (5%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H  ++K       ++A  LI  Y    +L  A  VF+ +   NV  +N +I  Y  +
Sbjct: 39  KQIHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLS 98

Query: 262 GLNEE----AIRVFYEMTLEGVEPTRVSVTSILSA-SANLDALDEGKQAHAVAVINGMEL 316
           G NE     A  V  +M ++GV     +   +L   + +   L   K  HA     G   
Sbjct: 99  G-NESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYW 157

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
           D  + +S+I+ Y + G +E A  VFS M ERD+V+WN ++   V++G             
Sbjct: 158 DIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGD------------ 205

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
                 +D A +VF+ +  RD V WNT+L  +   G   +A +LF +M       +I+SW
Sbjct: 206 ------LDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDKAFKLFERMA----ERDIVSW 255

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           ++++ G+ +NG M+ A+ +F +        NL+ WTT+ISG  +     EA+    EM +
Sbjct: 256 STMVCGYSKNGDMDMARMLFDRCPV----KNLVLWTTIISGYAEKGQVKEAMNLCDEMEK 311

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
           +G++         L+AC +   L  G+ +H   +R      T ++ S +DMYAKCG +  
Sbjct: 312 SGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDD 371

Query: 557 AKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           A RVF+ +   K+L  +N+MI G+ +HG   +++ LF  + ++G  PD  TF  +L AC+
Sbjct: 372 AFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACT 431

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           HAGLVNEG   F  M   + + P +EH+GC+V+LL R G+L EA  ++ +MP +P+A I+
Sbjct: 432 HAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIIL 491

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
           G+LL  C   N+ +LA  +S++L +L P +PGN+  LSN YA SG W  V++VR  M ++
Sbjct: 492 GTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDE 551

Query: 736 GLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           G +K  G S I++ EE+H F   D SHPK+ +IY  +  L   +R V  V
Sbjct: 552 GGQKPSGVSSIEVEEEVHEFTVRDWSHPKSGDIYNMIDRLVHDLRQVGYV 601



 Score =  186 bits (473), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 143/552 (25%), Positives = 242/552 (43%), Gaps = 128/552 (23%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +QIHA+++K      ++ Y+  KL+  Y+  + L  A  +F ++   NV  +  +I    
Sbjct: 39  KQIHAQLIKC--HLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYS 96

Query: 159 RVGLSEKALIGF---VEMQEDGVSPDNFVLPNVLKAC-GALGWVGFGRAVHGYVLKVGFD 214
             G    +L  F   ++M  DGV  DNF  P +LK C G+  W+   + VH +V K+GF 
Sbjct: 97  LSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFY 156

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
             +FV +SLID Y +CGD+E A KVF GM  R+VV+WNSM+ G V+NG  + A++VF EM
Sbjct: 157 WDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEM 216

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
                 P R                                 D V  +++++ ++K G +
Sbjct: 217 ------PER---------------------------------DRVSWNTMLDGFTKAGEM 237

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
           + A  +F RM ERDIV+W+ ++  Y ++G  D+                  A+ +F+   
Sbjct: 238 DKAFKLFERMAERDIVSWSTMVCGYSKNGDMDM------------------ARMLFDRCP 279

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
           ++++VLW T+++ YA+ G+  EA  L  +M+  G+  +   + S++     +G +   K 
Sbjct: 280 VKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKK 339

Query: 455 M------------------FLQM--------------QSLGVQPNLITWTTLISGLTQNS 482
           M                  F+ M                +  + +L++W ++I G   + 
Sbjct: 340 MHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHG 399

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
            G ++I  F  M+  G KP   T    L ACT    +  GR                   
Sbjct: 400 HGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGR------------------- 440

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
                    G  +  +RV+ I P  ++  Y  M+      G   EA  L +++     +P
Sbjct: 441 ---------GYFYSMQRVYGIVP--QIEHYGCMVDLLGRGGHLKEAFWLVRSMP---FEP 486

Query: 603 DSITFTNILNAC 614
           ++I    +L AC
Sbjct: 487 NAIILGTLLGAC 498



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 16/194 (8%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  +++ Q++EA++L  EM+    ++    +  +L  C     +  G+++H   L++  
Sbjct: 290 ISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSR- 348

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRV-KNVFSWAAIIGLNCRVGLSEKALIG 169
            F  +  V    +  YAKC  +D A R+F  ++  K++ SW ++I      G  EK++  
Sbjct: 349 -FRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIEL 407

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA-------VHGYVLKVGFDGCVFVASS 222
           F  M  +G  PD +    +L AC   G V  GR        V+G V ++   GC      
Sbjct: 408 FNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGC------ 461

Query: 223 LIDMYGKCGDLEEA 236
           ++D+ G+ G L+EA
Sbjct: 462 MVDLLGRGGHLKEA 475


>gi|15229753|ref|NP_190611.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75202753|sp|Q9SCT2.1|PP277_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g50420
 gi|6561982|emb|CAB62471.1| putative protein [Arabidopsis thaliana]
 gi|332645144|gb|AEE78665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 794

 Score =  330 bits (845), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 195/685 (28%), Positives = 362/685 (52%), Gaps = 22/685 (3%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFA-RNEYVETKLVVFYAKCDALDVASRLFCRL 142
           EL + CV    +   +QIHA +L  G   A  + Y    L+  Y +C +L+ A ++F ++
Sbjct: 99  ELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISMYVRCGSLEQARKVFDKM 158

Query: 143 RVKNVFSWAAIIGLNCR-VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
             +NV S+ A+     R    +  A      M  + V P++    ++++ C  L  V  G
Sbjct: 159 PHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSSTFTSLVQVCAVLEDVLMG 218

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
            +++  ++K+G+   V V +S++ MY  CGDLE AR++FD +  R+ VAWN+MIVG ++N
Sbjct: 219 SSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIVGSLKN 278

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
              E+ +  F  M + GV+PT+ + + +L+  + L +   GK  HA  +++    D  L 
Sbjct: 279 DKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLADLPLD 338

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +++++ Y   G + +A  VF R+   ++V+WN +I     SG S+       + MY +  
Sbjct: 339 NALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSII-----SGCSENGFGEQAMLMYRRLL 393

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           R+   +         D   ++  ++A A+  R      L  Q+   G   ++    +++ 
Sbjct: 394 RMSTPRP--------DEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLS 445

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
            + +N +   A+ +F  M+    + +++ WT +I G ++      A+ FF EM     + 
Sbjct: 446 MYFKNREAESAQKVFDVMK----ERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREKNRS 501

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
              +++  + AC+D+A LR G   H   IR        +  +LVDMY K G    A+ +F
Sbjct: 502 DGFSLSSVIGACSDMAMLRQGEVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETAETIF 561

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
            ++ + +L  +N+M+  Y+ HG+  +AL+ F+ + + G  PD++T+ ++L ACSH G   
Sbjct: 562 SLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPDAVTYLSLLAACSHRGSTL 621

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI-LTMPCDPDAHIIGSLLS 680
           +G  L+  M  +  +K   +H+ C+VNL+S+ G +DEAL +I  + P +  A +  +LLS
Sbjct: 622 QGKFLWNQM-KEQGIKAGFKHYSCMVNLVSKAGLVDEALELIEQSPPGNNQAELWRTLLS 680

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            CV +   ++  Y +E +L+L+P++   ++ LSN YA +GRW +V+++R  ++     K+
Sbjct: 681 ACVNTRNLQIGLYAAEQILKLDPEDTATHILLSNLYAVNGRWEDVAEMRRKIRGLASSKD 740

Query: 741 PGCSWIQI-GEELHVFVACDRSHPK 764
           PG SWI++      VF + D+S+P+
Sbjct: 741 PGLSWIEVNNNNTQVFSSGDQSNPE 765



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/531 (24%), Positives = 247/531 (46%), Gaps = 33/531 (6%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           SY +LY +Y       S       A  L T M     +     +  L+Q C    D+  G
Sbjct: 165 SYNALYSAYSRNPDFASY------AFPLTTHMAFEYVKPNSSTFTSLVQVCAVLEDVLMG 218

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
             ++++I+K G  ++ N  V+T ++  Y+ C  L+ A R+F  +  ++  +W  +I  + 
Sbjct: 219 SSLNSQIIKLG--YSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIVGSL 276

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +    E  L+ F  M   GV P  F    VL  C  LG    G+ +H  ++       + 
Sbjct: 277 KNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLADLP 336

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE-MTLE 277
           + ++L+DMY  CGD+ EA  VF  +   N+V+WNS+I G  +NG  E+A+ ++   + + 
Sbjct: 337 LDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLLRMS 396

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
              P   + ++ +SA+A  +    GK  H      G E    +G+++++ Y K    E A
Sbjct: 397 TPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESA 456

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
           + VF  M ERD+V W  +I  + + G S++ V    ++MY +  R D             
Sbjct: 457 QKVFDVMKERDVVLWTEMIVGHSRLGNSELAV-QFFIEMYREKNRSDGFS---------- 505

Query: 398 VVLWNTLLAAYADLG--RSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKD 454
               ++++ A +D+   R GE   +F+ + +  G    +    +++  + +NG+   A+ 
Sbjct: 506 ---LSSVIGACSDMAMLRQGE---VFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETAET 559

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F    SL   P+L  W +++   +Q+    +A+ FF+++LE G  P   T    L+AC+
Sbjct: 560 IF----SLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPDAVTYLSLLAACS 615

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
              S   G+ +   +    +       + +V++ +K G + +A  + + SP
Sbjct: 616 HRGSTLQGKFLWNQMKEQGIKAGFKHYSCMVNLVSKAGLVDEALELIEQSP 666



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 140/621 (22%), Positives = 269/621 (43%), Gaps = 107/621 (17%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN--SMIVGYVQNG--LNEEAIRV--F 271
           +  ++LI MY +C  LE+ARKVFD M  RN+V     S +  YV  G  L+ + I++  F
Sbjct: 23  YANNNLISMYVRCSSLEQARKVFDKMPQRNIVTLFGLSAVFEYVSMGSSLHSQIIKLGSF 82

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN---VLGSSIINFY 328
             +    +     SV  +     ++  L   +Q HA+ +  G           +++I+ Y
Sbjct: 83  QMIFFMPLNEIASSVVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISMY 142

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASY----------------------------- 359
            + G LE A  VF +M  R++V++N L ++Y                             
Sbjct: 143 VRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSSTF 202

Query: 360 -----------------------VQSGQSD-VVVASSIVDMYAKCERIDNAKQVFNSIIL 395
                                  ++ G SD VVV +S++ MY+ C  +++A+++F+ +  
Sbjct: 203 TSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNN 262

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG------------- 442
           RD V WNT++       +  +    F  M + G+ P   +++ V+ G             
Sbjct: 263 RDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLI 322

Query: 443 ----------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
                                 +   G M EA  +F ++ +    PNL++W ++ISG ++
Sbjct: 323 HARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHN----PNLVSWNSIISGCSE 378

Query: 481 NSCGNEAILFFQEMLETGI-KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           N  G +A+L ++ +L     +P   T + A+SA  +     +G+ +HG + +        
Sbjct: 379 NGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVF 438

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           + T+L+ MY K      A++VFD+   +++ ++  MI G++  G +  A+  F  + ++ 
Sbjct: 439 VGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREK 498

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
              D  + ++++ ACS   ++ +G E+F  +         M   G +V++  + G  + A
Sbjct: 499 NRSDGFSLSSVIGACSDMAMLRQG-EVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETA 557

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ--LEPDNPGNYVALSNAYA 717
              I ++  +PD     S+L    +    E A    E +L+    PD    Y++L  A +
Sbjct: 558 -ETIFSLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPD-AVTYLSLLAACS 615

Query: 718 ASGRWNEVSQVRDIMKEKGLR 738
             G   +   + + MKE+G++
Sbjct: 616 HRGSTLQGKFLWNQMKEQGIK 636


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/593 (31%), Positives = 315/593 (53%), Gaps = 59/593 (9%)

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            + G++E AR  F+ M  R   ++N+++ GY +N L + A+ +F  M      P+R    
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRM------PSR---- 77

Query: 288 SILSASANLDALDEGKQA--HAVAVINGMELDN--VLGSSIINFYSKVGLLEDAEVVFSR 343
            + S +A +  L   +Q    A A +  +      V  +S++  Y + GLL DA  +F +
Sbjct: 78  DLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQ 137

Query: 344 MVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQVF 390
           M ER+ V++ +L+   + +G+              DVV  ++++  Y +  RI  A+ +F
Sbjct: 138 MPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALF 197

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
           + +  R+VV W  +++ YA  G    A +LF  M       N +SW ++++G+++ G + 
Sbjct: 198 DEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVE 253

Query: 451 EAKDMFLQMQSLGV-----------QPNLI----------------TWTTLISGLTQNSC 483
           +A ++F  M    V           Q  ++                TW+ +I    QN  
Sbjct: 254 DAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEF 313

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
             EA+  F+EML  G++P+  ++   L+ C  +A L  GR +H  ++R    +    V++
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSA 373

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+ MY KCGN+ +AKRVF     K++ ++N+MI+GYA HGL  +AL +F +++  G+ PD
Sbjct: 374 LITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPD 433

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            IT+   L ACS+ G V EG E+F  M  +  ++P  EH+ C+V+LL R G ++EA  +I
Sbjct: 434 GITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLI 493

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             MP +PDA I G+L+  C      E+AE  ++ LL+LEP N G YV LS+ Y + GRW 
Sbjct: 494 KNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWE 553

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD-RSHPKTEEIYATLALL 775
           + S++R  +  + L K+PGCSWI+  + +H+F + D  +HP+   I   L  L
Sbjct: 554 DASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKL 606



 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 139/244 (56%), Gaps = 12/244 (4%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           ++V + +   +D A  +F ++R ++  +W+A+I    +     +AL  F EM   GV P+
Sbjct: 273 MMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPN 332

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
              + ++L  C AL  + +GR VH  +L+  FD  VF  S+LI MY KCG+L++A++VF 
Sbjct: 333 YPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFH 392

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
               +++V WNSMI GY Q+GL E+A+ +F++M L G+ P  ++    L+A +    + E
Sbjct: 393 TFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKE 452

Query: 302 GKQAHAVAVINGMELDNVLG------SSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNL 354
           G++     + N M +++ +       S +++   + GL+E+A +++ +  VE D V W  
Sbjct: 453 GRE-----IFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGA 507

Query: 355 LIAS 358
           L+ +
Sbjct: 508 LMGA 511



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 158/354 (44%), Gaps = 66/354 (18%)

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           D  V   ++++  Y + G + EAR +FD M  RNVV+W +MI GY QNG    A ++F  
Sbjct: 171 DRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEV 230

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVG 332
           M     E   VS T++L     +  +  G    A  + N M    V   ++++  + + G
Sbjct: 231 MP----ERNEVSWTAML-----VGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQ------------------------------- 361
           +++ A+ VF +M ERD  TW+ +I +Y Q                               
Sbjct: 282 MVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 362 ---------------------SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
                                S   DV   S+++ MY KC  +D AK+VF++   +D+V+
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVM 401

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           WN+++  YA  G   +A  +F+ M+L G+SP+ I++   +      G++ E +++F  M 
Sbjct: 402 WNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMT 461

Query: 461 -SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +  ++P    ++ ++  L ++    EA    + M    ++P        + AC
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM---PVEPDAVIWGALMGAC 512



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 199/468 (42%), Gaps = 61/468 (13%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ SL + Y        +   + +A+ L  +M  RN      + G LL           G
Sbjct: 114 SFTSLLRGYV-------RHGLLADAIRLFQQMPERNHVSYTVLLGGLLDA---------G 157

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +   AR L + +   R+    T ++  Y +   +  A  LF  +  +NV SW A+I    
Sbjct: 158 RVNEARRLFD-EMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMIS--- 213

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNF-VLPNVLKACGALGWVGFGRAVH----GYVLKVGF 213
                     G+ +  E  ++   F V+P   +       VG+ +A H      +     
Sbjct: 214 ----------GYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMP 263

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           +  V   ++++  +G+ G ++ A+ VF+ M  R+   W++MI  Y QN    EA+  F E
Sbjct: 264 EHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFRE 323

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M   GV P   SV SIL+  A L  LD G++ HA  +    ++D    S++I  Y K G 
Sbjct: 324 MLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGN 383

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           L+ A+ VF     +DIV WN +I  Y Q G                    + A  +F+ +
Sbjct: 384 LDKAKRVFHTFEPKDIVMWNSMITGYAQHGLG------------------EQALGIFHDM 425

Query: 394 ILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQL-EGISPNIISWNSVILGFLRNGQ 448
            L     D + +   L A +  G+  E   +F  M +   I P    ++ ++    R+G 
Sbjct: 426 RLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGL 485

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           + EA D+   ++++ V+P+ + W  L+     +     A +  +++LE
Sbjct: 486 VEEAFDL---IKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLE 530



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 141/319 (44%), Gaps = 17/319 (5%)

Query: 26  SQTHLTKLRESDN-SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGE 84
           ++T   K+RE D+ ++ ++ K+Y        + + + EA+    EM  R  +        
Sbjct: 286 AKTVFEKMRERDDGTWSAMIKAY-------EQNEFLMEALSTFREMLWRGVRPNYPSVIS 338

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  C     +  G+++HA +L+    F  + +  + L+  Y KC  LD A R+F     
Sbjct: 339 ILTVCAALAVLDYGREVHAAMLRCS--FDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP 396

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           K++  W ++I    + GL E+AL  F +M+  G+SPD       L AC   G V  GR +
Sbjct: 397 KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREI 456

Query: 205 -HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG 262
            +   +           S ++D+ G+ G +EEA  +   M +  + V W +++ G  +  
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM-GACRMH 515

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSA-SANLDALDEGKQAHAVAVINGMELDNVLG 321
            N E   V  +  LE +EP       +LS    ++   ++  +      I+   L+   G
Sbjct: 516 RNAEIAEVAAKKLLE-LEPGNAGPYVLLSHIYTSVGRWEDASKMR--KFISSRNLNKSPG 572

Query: 322 SSIINFYSKVGLLEDAEVV 340
            S I +  +V L    +V+
Sbjct: 573 CSWIEYDKRVHLFTSGDVL 591


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 203/650 (31%), Positives = 338/650 (52%), Gaps = 62/650 (9%)

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED 176
           Y   K +    +   ++ A  LF  +  +N+ +W ++I    R     KA   F EM + 
Sbjct: 68  YTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDR 127

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
            V   N ++   +   G   WV  GR +   + +     CV   +++I  Y + G ++EA
Sbjct: 128 DVVSWNLMISGYVSCQGR--WVEEGRHLFDEMPE---RDCV-SWNTMISGYTRSGRMDEA 181

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
            ++FD M  RNVV+WN+M+ G++QNG  E AI  F  M     E    S++++++     
Sbjct: 182 LQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMP----ERDSASLSALVAGLIQN 237

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINF------YSKVGLLEDAEVVFSRM------ 344
             LDE K+     ++     D+  G  +  +      Y + G ++ A  +F ++      
Sbjct: 238 GELDEAKRI----LLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGG 293

Query: 345 ------VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
                  ER++V+WN +I  YV                  K   I +A+ +F+ +  RD 
Sbjct: 294 QKDGGRFERNVVSWNSMIMCYV------------------KARDIFSARVLFDQMKERDT 335

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
           + WNT+++ Y  +    EA  LF +M     +P+ ++WNS+I GF + G +  A+ +F  
Sbjct: 336 ISWNTMISGYVRMSDMEEAWMLFQEMP----NPDTLTWNSMISGFAQKGNLELARALFAT 391

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           +     Q NL++W ++I+G   N     A   +++ML  G KP   T++  LS C+  A+
Sbjct: 392 IP----QKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAA 447

Query: 519 LRNGRAIHGYLIRHDLCLPT-PIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMI 576
           L  G  IH  + +    +P  PI  SL+ MY++CG I +A+ +FD +   KE+  +NAMI
Sbjct: 448 LHLGMQIHQQITK--TVIPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMI 505

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
            GYA HG A +AL LF+ +++  + P  ITF ++LNAC+HAG V EG   F  M  +  +
Sbjct: 506 GGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGI 565

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
           +P +EHF  +V+++ R G L+EA+ +I +MP +PD  + G+LL  C   N  ELA   +E
Sbjct: 566 EPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAE 625

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
            L++LEP++   YV L N YA  G+W+  +++R +M+   +RK PG SW+
Sbjct: 626 ALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWV 675



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 120/477 (25%), Positives = 211/477 (44%), Gaps = 53/477 (11%)

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ------- 364
           N + LD    +  I+   + G + +A  +F  M +R+IVTWN +I  YV+  +       
Sbjct: 61  NSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKL 120

Query: 365 ------SDVVVASSIVDMYAKCE--RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
                  DVV  + ++  Y  C+   ++  + +F+ +  RD V WNT+++ Y   GR  E
Sbjct: 121 FDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDE 180

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           A +LF  MQ      N++SWN+++ GFL+NG +  A + F++M     + +  + + L++
Sbjct: 181 ALQLFDSMQ----ERNVVSWNAMVTGFLQNGDVERAIEFFMRMP----ERDSASLSALVA 232

Query: 477 GLTQNSCGNEA--ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           GL QN   +EA  IL      +             L+       +   R +   +  +D 
Sbjct: 233 GLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDG 292

Query: 535 C------LPTPIVT--SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
                      +V+  S++  Y K  +I  A+ +FD    ++   +N MISGY       
Sbjct: 293 GQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDME 352

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
           EA  LF+ +     +PD++T+ ++++  +  G     LEL   +F+    K ++  +  +
Sbjct: 353 EAWMLFQEMP----NPDTLTWNSMISGFAQKG----NLELARALFATIPQK-NLVSWNSM 403

Query: 647 VNLLSRCGNLD---EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ-LE 702
           +      G+     E  R +L     PD H + S+LS C       L   I + + + + 
Sbjct: 404 IAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVI 463

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI--GEELHVFVA 757
           PD P N  +L   Y+  G    + + R I  E  L+K    SW  +  G   H F A
Sbjct: 464 PDIPINN-SLITMYSRCG---AIVEARTIFDEVKLQKEV-ISWNAMIGGYAFHGFAA 515



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 54/245 (22%)

Query: 423 QMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
           Q     +S ++ + N  I   +RNG++NEA+ +F  M     Q N++TW ++I+G  +  
Sbjct: 57  QQPKNSVSLDLYTPNKRISHLIRNGRINEARALFDAMP----QRNIVTWNSMITGYVRRR 112

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
              +A   F EM      P    ++  L                                
Sbjct: 113 EMAKARKLFDEM------PDRDVVSWNL-------------------------------- 134

Query: 543 SLVDMYAKCGN--IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
            ++  Y  C    + + + +FD  P ++   +N MISGY   G   EAL LF ++Q++ +
Sbjct: 135 -MISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNV 193

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
               +++  ++      G V   +E F+ M        S    G + N     G LDEA 
Sbjct: 194 ----VSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQN-----GELDEAK 244

Query: 661 RVILT 665
           R++LT
Sbjct: 245 RILLT 249


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 197/682 (28%), Positives = 325/682 (47%), Gaps = 122/682 (17%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI--------------------- 255
           ++  + L++   K G + +ARK+FD M  ++  +WN+MI                     
Sbjct: 65  IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSC 124

Query: 256 ----------VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
                      GY + G   EA  +F  M LEG + ++ ++ S+L   ++L  +  G+  
Sbjct: 125 KSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMI 184

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS--RMVERDIVTWNLLIASYVQSG 363
           H   V NG E +  + + +++ Y+K   + +AE +F       ++ V W  ++  Y Q+G
Sbjct: 185 HGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNG 244

Query: 364 Q----------------------------------------------------SDVVVAS 371
                                                                S+V V S
Sbjct: 245 DGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQS 304

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS- 430
           ++VDMYAKC  + NAK +  ++   DVV WN+L+  +   G   EA RLF  M    +  
Sbjct: 305 ALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKI 364

Query: 431 -----PNIISW---------------------------NSVILGFLRNGQMNEAKDMFLQ 458
                P++++                            N+++  + + G M+ A  +F +
Sbjct: 365 DDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEK 424

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           M    ++ ++I+WT+L++G  QN+   E++  F +M  TG+ P    +   LSAC ++  
Sbjct: 425 M----LEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTL 480

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           L  G+ +H   I+  L     +  SLV MYAKCG +  A  +F     K++  + A+I G
Sbjct: 481 LEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVG 540

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           YA +G    +L  +  +   G  PD ITF  +L ACSHAGLV+EG + F  M   + +KP
Sbjct: 541 YAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKP 600

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
             EH+ C+++L  R G LDEA +++  M   PDA +  SLLS C      ELAE  + +L
Sbjct: 601 GPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNL 660

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
            +LEP N   YV LSN Y+AS +WN+V+++R +MK KG+ K PGCSW++I   ++ F++ 
Sbjct: 661 FELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISD 720

Query: 759 DRSHPKTEEIYATLALLGMHVR 780
           DR HP+  EIY  +  + + ++
Sbjct: 721 DRGHPREAEIYTKIDEIILRIK 742



 Score =  229 bits (583), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 160/567 (28%), Positives = 282/567 (49%), Gaps = 40/567 (7%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA DL   M+   ++      G +L+ C     + TG+ IH  ++KNG  F  N +V T 
Sbjct: 145 EAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNG--FEGNVFVVTG 202

Query: 122 LVVFYAKCDALDVASRLFCRLRV--KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           LV  YAKC  +  A  LF  L    KN   W A++    + G   KA+  F  M   GV 
Sbjct: 203 LVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVE 262

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
            + +  P +L AC ++    FG  VHG+++K GF   V+V S+L+DMY KCGDL+ A+ +
Sbjct: 263 CNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNM 322

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
            + M   +VV+WNS++VG+V++GL EEA+R+F  M    ++    +  S+L+    + ++
Sbjct: 323 LETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSI 381

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
           +  K  H + +  G E   ++ +++++ Y+K G ++ A  VF +M+E+D+++W  L+  Y
Sbjct: 382 NP-KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGY 440

Query: 360 VQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSII---LR-DV 398
            Q+                    D  + +SI+   A+   ++  KQV    I   LR   
Sbjct: 441 AQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQ 500

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
            ++N+L+A YA  G   +A  +F  MQ++    ++I+W ++I+G+ +NG+   +   +  
Sbjct: 501 SVYNSLVAMYAKCGCLDDADAIFVSMQVK----DVITWTAIIVGYAQNGKGRNSLKFYDA 556

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSACTDVA 517
           M S G +P+ IT+  L+   +     +E   +FQ+M +  GIKP      C +       
Sbjct: 557 MVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSG 616

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR----VFDISPSKELPVYN 573
            L   + +   L + D+     +  SL+       N+  A+R    +F++ P   +P Y 
Sbjct: 617 KLDEAKQL---LDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMP-YV 672

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGI 600
            + + Y+      +   + K ++ KGI
Sbjct: 673 MLSNMYSASRKWNDVAKIRKLMKSKGI 699



 Score =  207 bits (528), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 157/600 (26%), Positives = 268/600 (44%), Gaps = 128/600 (21%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           ++EY    ++  Y     L  A  LF     K+  +W++II   C+ G   +A   F  M
Sbjct: 94  KDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSM 153

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           + +G     F L +VL+ C +LG +  G  +HG+V+K GF+G VFV + L+DMY KC  +
Sbjct: 154 RLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCV 213

Query: 234 EEARKVFDGM--IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
            EA  +F G+    +N V W +M+ GY QNG   +A+  F  M  +GVE  + +  +IL+
Sbjct: 214 SEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILT 273

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           A +++ A   G+Q H   V +G   +  + S++++ Y+K G L++A+ +   M + D+V+
Sbjct: 274 ACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVS 333

Query: 352 WNLLIASYVQSG------------------------------------------------ 363
           WN L+  +V+ G                                                
Sbjct: 334 WNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKT 393

Query: 364 --QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
             ++  +V++++VDMYAK   +D A  VF  ++ +DV+ W +L+  YA      E+ ++F
Sbjct: 394 GFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIF 453

Query: 422 YQMQLEGISPN------IIS-----------------------------WNSVILGFLRN 446
             M++ G++P+      I+S                             +NS++  + + 
Sbjct: 454 CDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKC 513

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G +++A  +F+ MQ      ++ITWT +I G  QN  G  ++ F+  M+ +G +P   T 
Sbjct: 514 GCLDDADAIFVSMQV----KDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITF 569

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
              L AC+    +  GR                                Q  +V+ I P 
Sbjct: 570 IGLLFACSHAGLVDEGRKY----------------------------FQQMNKVYGIKPG 601

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            E   Y  MI  +   G   EA  L   L Q  + PD+  + ++L+AC     V+E LEL
Sbjct: 602 PEH--YACMIDLFGRSGKLDEAKQL---LDQMDVKPDATVWKSLLSACR----VHENLEL 652



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 4/212 (1%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   ++  ++     E++ +  +M+         I   +L  C     +  G+Q+H   
Sbjct: 432 SWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDF 491

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K+G  ++++ Y    LV  YAKC  LD A  +F  ++VK+V +W AII    + G    
Sbjct: 492 IKSGLRWSQSVY--NSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRN 549

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFVASSLI 224
           +L  +  M   G  PD      +L AC   G V  GR     + KV G        + +I
Sbjct: 550 SLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMI 609

Query: 225 DMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
           D++G+ G L+EA+++ D M +  +   W S++
Sbjct: 610 DLFGRSGKLDEAKQLLDQMDVKPDATVWKSLL 641


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 193/640 (30%), Positives = 332/640 (51%), Gaps = 85/640 (13%)

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
           CV + ++L+ M+ + G+L +A  VF  M  R+V +WN ++ GY + G  +EA+ +++ M 
Sbjct: 131 CVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRML 190

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
              + P   +  S+L   A +  +  GK+ HA  +  G E D  +G+++I  Y K G + 
Sbjct: 191 WAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDIS 250

Query: 336 DAEVVFSRMVERDIVTWNLLIAS------------------------------------- 358
           +A ++F +M +RD ++WN +I+                                      
Sbjct: 251 NARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE 310

Query: 359 -------------YVQSGQ--SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
                        YV   +   D+ + +S++ MY+   R++ A+ VF+ +  +DVV W  
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTA 370

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQM--------- 449
           ++A+        +A   +  M+LEGI P+ I+  SV+     +G L  G           
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG 430

Query: 450 --------NEAKDMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQ 492
                   N   DM+ + + +             N+++WT+LI GL  N+   EA+LFF+
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFR 490

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           +M E+ +KP++ T+   LSAC  + +L  G+ IH + +R  +     +  +++DMY +CG
Sbjct: 491 QMKES-MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCG 549

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
               A   F+ S  K++  +N +++GYA  G A  A+ LF  + +  I PD ITF ++L 
Sbjct: 550 RKVPALNQFN-SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLC 608

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           ACS +G+V EGLE F  M + + + P+++H+ CVV++L R G LD+A   I  MP  PDA
Sbjct: 609 ACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDA 668

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            I G+LL+ C      EL E  ++ + + +  + G Y+ L N YA  G W++VS+VR +M
Sbjct: 669 AIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLM 728

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           +E+GL  +PGCSW++I  ++H F++ D SH +++EI   L
Sbjct: 729 RERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVL 768


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 193/640 (30%), Positives = 332/640 (51%), Gaps = 85/640 (13%)

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
           CV + ++L+ M+ + G+L +A  VF  M  R+V +WN ++ GY + G  +EA+ +++ M 
Sbjct: 131 CVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRML 190

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
              + P   +  S+L   A +  +  GK+ HA  +  G E D  +G+++I  Y K G + 
Sbjct: 191 WAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDIS 250

Query: 336 DAEVVFSRMVERDIVTWNLLIAS------------------------------------- 358
           +A ++F +M +RD ++WN +I+                                      
Sbjct: 251 NARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE 310

Query: 359 -------------YVQSGQ--SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
                        YV   +   D+ + +S++ MY+   R++ A+ VF+ +  +DVV W  
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTA 370

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQM--------- 449
           ++A+        +A   +  M+LEGI P+ I+  SV+     +G L  G           
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG 430

Query: 450 --------NEAKDMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQ 492
                   N   DM+ + + +             N+++WT+LI GL  N+   EA+LFF+
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFR 490

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           +M E+ +KP++ T+   LSAC  + +L  G+ IH + +R  +     +  +++DMY +CG
Sbjct: 491 QMKES-MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCG 549

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
               A   F+ S  K++  +N +++GYA  G A  A+ LF  + +  I PD ITF ++L 
Sbjct: 550 RKVPALNQFN-SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLC 608

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           ACS +G+V EGLE F  M + + + P+++H+ CVV++L R G LD+A   I  MP  PDA
Sbjct: 609 ACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDA 668

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            I G+LL+ C      EL E  ++ + + +  + G Y+ L N YA  G W++VS+VR +M
Sbjct: 669 AIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLM 728

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           +E+GL  +PGCSW++I  ++H F++ D SH +++EI   L
Sbjct: 729 RERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVL 768


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 187/629 (29%), Positives = 321/629 (51%), Gaps = 54/629 (8%)

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           +P  F+L ++L A    G +   R V   +     D  +F  ++L+        + +  +
Sbjct: 45  APPTFLLNHLLTAYAKSGRLARARRVFDEMP----DPNLFTRNALLSALAHSRLVPDMER 100

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLD 297
           +F  M  R+ V++N++I G+   G    +++++  +  E  V PTR+++++++  ++ L 
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
               G   H   +  G      +GS +++ Y+K+GL+ DA  VF  M  + +V +N LI 
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
             +                  +C+ I++AK +F  ++ RD + W T++      G   EA
Sbjct: 221 GLL------------------RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEA 262

Query: 418 SRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK-----------------DM 455
             +F +M+ EG+  +  ++ S++     L  L  G+   A                  DM
Sbjct: 263 LDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDM 322

Query: 456 FLQMQSLGVQP---------NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           + + +S+ +           N+I+WT +I G  QN+C  EA+  F EM   GIKP   T+
Sbjct: 323 YSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
              +S+C ++ASL  G   H   +   L     +  +LV +Y KCG+I  A R+FD    
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            +   + A+++GYA  G A E + LF+ +   G+ PD +TF  +L+ACS AGLV +G + 
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDY 502

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  M  DH + P  +H+ C+++L SR G   EA   I  MP  PDA    +LLS+C    
Sbjct: 503 FDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
             E+ ++ +E+LL+ +P NP +YV L + +AA G+W EV+ +R  M+++ ++K PGCSWI
Sbjct: 563 NMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWI 622

Query: 747 QIGEELHVFVACDRSHPKTEEIYATLALL 775
           +   ++H+F A D+SHP +  IY  L  L
Sbjct: 623 KYKNKVHIFSADDQSHPFSSRIYEKLEWL 651



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/471 (29%), Positives = 233/471 (49%), Gaps = 66/471 (14%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D   G  +H ++L+ G  F    +V + LV  YAK   +  A R+F  +  K V  +  +
Sbjct: 161 DRALGHSVHCQVLRLG--FGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 154 IG--LNCRV-----------------------------GLSEKALIGFVEMQEDGVSPDN 182
           I   L C++                             GL  +AL  F  M+ +GV  D 
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQ 278

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
           +   ++L ACGAL  +  G+ +H Y+ +  ++  VFV S+L+DMY KC  +  A  VF  
Sbjct: 279 YTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRR 338

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  RN+++W +MIVGY QN  +EEA+R F EM ++G++P   ++ S++S+ ANL +L+EG
Sbjct: 339 MTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
            Q H +A+++G+     + ++++  Y K G +EDA  +F  M   D V+W  L+  Y Q 
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQF 458

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G++               E ID  +++  + +  D V +  +L+A +  G   +    F 
Sbjct: 459 GKAK--------------ETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFD 504

Query: 423 QMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
            MQ + GI P    +  +I  + R+G+  EA++   QM      P+   W TL+S     
Sbjct: 505 SMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPH---SPDAFGWATLLS----- 556

Query: 482 SC---GNEAILFF--QEMLETGIK-PSTTTITCALSAC----TDVASLRNG 522
           SC   GN  I  +  + +LET  + P++  + C++ A     T+VA LR G
Sbjct: 557 SCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRG 607



 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/502 (26%), Positives = 213/502 (42%), Gaps = 89/502 (17%)

Query: 137 RLFCRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
           RLF  +  ++  S+ A+I G +     +    +    ++E+ V P    L  ++    AL
Sbjct: 100 RLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASAL 159

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV------ 249
                G +VH  VL++GF    FV S L+DMY K G + +AR+VF  M A+ VV      
Sbjct: 160 SDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLI 219

Query: 250 -------------------------AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
                                     W +M+ G  QNGL  EA+ VF  M  EGV   + 
Sbjct: 220 TGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQY 279

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +  SIL+A   L AL+EGKQ HA       E +  +GS++++ YSK   +  AE VF RM
Sbjct: 280 TFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339

Query: 345 VERDIVTWNLLIASYVQSGQSD-------------------------------------- 366
             R+I++W  +I  Y Q+  S+                                      
Sbjct: 340 TCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGA 399

Query: 367 --------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                         + V++++V +Y KC  I++A ++F+ +   D V W  L+  YA  G
Sbjct: 400 QFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFG 459

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITW 471
           ++ E   LF +M   G+ P+ +++  V+    R G + +  D F  MQ   G+ P    +
Sbjct: 460 KAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHY 519

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           T +I   +++    EA  F ++M  +   P        LS+C    ++  G+     L+ 
Sbjct: 520 TCMIDLYSRSGRFKEAEEFIKQMPHS---PDAFGWATLLSSCRLRGNMEIGKWAAENLLE 576

Query: 532 HDLCLPTPIVTSLVDMYAKCGN 553
            D   P   V  L  M+A  G 
Sbjct: 577 TDPQNPASYVL-LCSMHAAKGQ 597



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 168/325 (51%), Gaps = 16/325 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ++ L++     EA+D+   M+     I    +G +L  C     +  G+QIHA I +   
Sbjct: 250 VTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT-- 307

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
           ++  N +V + LV  Y+KC ++ +A  +F R+  +N+ SW A+I    +   SE+A+  F
Sbjct: 308 WYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAF 367

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EMQ DG+ PD+F L +V+ +C  L  +  G   H   L  G    + V+++L+ +YGKC
Sbjct: 368 SEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKC 427

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E+A ++FD M   + V+W +++ GY Q G  +E I +F +M   G++P  V+   +L
Sbjct: 428 GSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVL 487

Query: 291 SASAN-------LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           SA +         D  D  ++ H +  I+    D+   + +I+ YS+ G  ++AE    +
Sbjct: 488 SACSRAGLVEKGCDYFDSMQKDHGIVPID----DHY--TCMIDLYSRSGRFKEAEEFIKQ 541

Query: 344 MVER-DIVTWNLLIASYVQSGQSDV 367
           M    D   W  L++S    G  ++
Sbjct: 542 MPHSPDAFGWATLLSSCRLRGNMEI 566


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 192/646 (29%), Positives = 332/646 (51%), Gaps = 100/646 (15%)

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY  C    +A+  FD +  RN+ +W  ++  +  +G ++E +R    M  +GV P  V+
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
             + L +  + ++L +G + H + V + +E+D  + ++++N Y K G L  A+ VF++M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 346 E-RDIVTWNLLIASY----------------------------------------VQSG- 363
             R++++W+++  ++                                        VQ G 
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 364 -----------QSDVVVASSIVDMYAKCERIDNAKQVFNSI--ILRDVVLWNTLLAAYAD 410
                      +S+++VA++++ MY +C  ++ A++VF+++   LRDVV WN +L+ Y  
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 411 LGRSGEASRLFYQMQL--------------------------------EGISPNIISWNS 438
             R  +A +L+ +MQL                                + +  N+I  N+
Sbjct: 241 NDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNA 300

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE-- 496
           ++  + + G   EA+ +F +M+    Q ++I+WTT+IS   +     EA   FQ+MLE  
Sbjct: 301 LVSMYAKCGSHTEARAVFDKME----QRSIISWTTIISAYVRRRLVAEACHLFQQMLELE 356

Query: 497 -----TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
                  +KP        L+AC DV++L  G+ +        L     + T++V++Y KC
Sbjct: 357 KNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKC 416

Query: 552 GNIHQAKRVFDISPSK-ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           G I +A+R+FD   S+ ++ ++NAMI+ YA  G + EAL LF  ++ +G+ PDS +F +I
Sbjct: 417 GEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSI 476

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQ-VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669
           L ACSH GL ++G   F  M ++++ V  +++HFGCV +LL R G L EA   +  +P  
Sbjct: 477 LLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVK 536

Query: 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR 729
           PDA    SLL+ C    + + A+ ++  LL+LEP     YVALSN YA   +W+ V++VR
Sbjct: 537 PDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVR 596

Query: 730 DIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
             M E+G++K  G S I+IG+ +H F   D +HP+  EI   LA L
Sbjct: 597 KFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKL 642



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 169/667 (25%), Positives = 298/667 (44%), Gaps = 95/667 (14%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +++ +   Q +E +  L  M+    +     +   L  C     +  G +IH  ++ +  
Sbjct: 30  VAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSR- 88

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRL-RVKNVFSWAAIIGLNCRVGLSEKALIG 169
               +  V   L+  Y KC +L  A R+F ++ R +NV SW+ + G +   G   +AL  
Sbjct: 89  -LEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRH 147

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  M   G+      +  +L AC +   V  GR +H  +   GF+  + VA++++ MYG+
Sbjct: 148 FRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGR 207

Query: 230 CGDLEEARKVFDGM--IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
           CG +EEARKVFD M    R+VV+WN M+  YV N   ++AI+++  M L    P +V+  
Sbjct: 208 CGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQL---RPDKVTYV 264

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S+LSA ++ + +  G+  H   V + +E + ++G+++++ Y+K G   +A  VF +M +R
Sbjct: 265 SLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQR 324

Query: 348 DIVTWNLLIASYV------------------------QSGQSDVVVASSIVDMYAKCERI 383
            I++W  +I++YV                        Q  + D +   +I++  A    +
Sbjct: 325 SIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSAL 384

Query: 384 DNAKQV-----------------------------------FNSIILR-DVVLWNTLLAA 407
           +  K V                                   F+++  R DV LWN ++A 
Sbjct: 385 EQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAV 444

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
           YA  G+S EA +LF++M++EG+ P+  S+ S++L     G  ++ K  F  M +   +  
Sbjct: 445 YAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTT---EYR 501

Query: 468 LITWTTLISGLTQNSCGNEAILF-FQEMLET-GIKPSTTTITCALSACTDVASLRNGRAI 525
            +T T    G   +  G    L   +E LE   +KP     T  L+AC +   L+  + +
Sbjct: 502 NVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEV 561

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP----SKELPVYNAMISGYAM 581
              L+R +    T  V +L ++YA+    H   +V          KE  V    I  Y M
Sbjct: 562 ANKLLRLEPRCATGYV-ALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKY-M 619

Query: 582 HGLAV------------EALA-LFKNLQQKGIDPDSITFTNILNACSHAGLV---NEGLE 625
           H  A             E LA L   +++ G  PD+    + ++      L+   +E L 
Sbjct: 620 HDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLA 679

Query: 626 LFVGMFS 632
           + +G+ S
Sbjct: 680 IALGLIS 686


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 187/629 (29%), Positives = 321/629 (51%), Gaps = 54/629 (8%)

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           +P  F+L ++L A    G +   R V   +     D  +F  ++L+        + +  +
Sbjct: 45  APPTFLLNHLLTAYAKSGRLARARRVFDEMP----DPNLFTRNALLSALAHSRLVPDMER 100

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLD 297
           +F  M  R+ V++N++I G+   G    +++++  +  E  V PTR+++++++  ++ L 
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
               G   H   +  G      +GS +++ Y+K+GL+ DA  VF  M  + +V +N LI 
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
             +                  +C+ I++AK +F  ++ RD + W T++      G   EA
Sbjct: 221 GLL------------------RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEA 262

Query: 418 SRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK-----------------DM 455
             +F +M+ EG+  +  ++ S++     L  L  G+   A                  DM
Sbjct: 263 LDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDM 322

Query: 456 FLQMQSLGVQP---------NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           + + +S+ +           N+I+WT +I G  QN+C  EA+  F EM   GIKP   T+
Sbjct: 323 YSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
              +S+C ++ASL  G   H   +   L     +  +LV +Y KCG+I  A R+FD    
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            +   + A+++GYA  G A E + LF+ +   G+ PD +TF  +L+ACS AGLV +G + 
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDY 502

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  M  DH + P  +H+ C+++L SR G   EA   I  MP  PDA    +LLS+C    
Sbjct: 503 FDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
             E+ ++ +E+LL+ +P NP +YV L + +AA G+W EV+ +R  M+++ ++K PGCSWI
Sbjct: 563 NMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWI 622

Query: 747 QIGEELHVFVACDRSHPKTEEIYATLALL 775
           +   ++H+F A D+SHP +  IY  L  L
Sbjct: 623 KYKNKVHIFSADDQSHPFSSRIYEKLEWL 651



 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 141/471 (29%), Positives = 233/471 (49%), Gaps = 66/471 (14%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D   G  +H ++L+ G  F    +V + LV  YAK   +  A R+F  +  K V  +  +
Sbjct: 161 DRALGHSVHCQVLRLG--FGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 154 IG--LNCRV-----------------------------GLSEKALIGFVEMQEDGVSPDN 182
           I   L C++                             GL  +AL  F  M+ +GV  D 
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQ 278

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
           +   ++L ACGAL  +  G+ +H Y+ +  ++  VFV S+L+DMY KC  +  A  VF  
Sbjct: 279 YTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRR 338

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  RN+++W +MIVGY QN  +EEA+R F EM ++G++P   ++ S++S+ ANL +L+EG
Sbjct: 339 MTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
            Q H +A+++G+     + ++++  Y K G +EDA  +F  M   D V+W  L+  Y Q 
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQF 458

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G++               E ID  +++  + +  D V +  +L+A +  G   +    F 
Sbjct: 459 GKAK--------------ETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFD 504

Query: 423 QMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
            MQ + GI P    +  +I  + R+G+  EA++   QM      P+   W TL+S     
Sbjct: 505 SMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPH---SPDAFGWATLLS----- 556

Query: 482 SC---GNEAILFF--QEMLETGIK-PSTTTITCALSAC----TDVASLRNG 522
           SC   GN  I  +  + +LET  + P++  + C++ A     T+VA LR G
Sbjct: 557 SCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRG 607



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/502 (26%), Positives = 213/502 (42%), Gaps = 89/502 (17%)

Query: 137 RLFCRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
           RLF  +  ++  S+ A+I G +     +    +    ++E+ V P    L  ++    AL
Sbjct: 100 RLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASAL 159

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV------ 249
                G +VH  VL++GF    FV S L+DMY K G + +AR+VF  M A+ VV      
Sbjct: 160 SDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLI 219

Query: 250 -------------------------AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
                                     W +M+ G  QNGL  EA+ VF  M  EGV   + 
Sbjct: 220 TGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQY 279

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +  SIL+A   L AL+EGKQ HA       E +  +GS++++ YSK   +  AE VF RM
Sbjct: 280 TFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339

Query: 345 VERDIVTWNLLIASYVQSGQSD-------------------------------------- 366
             R+I++W  +I  Y Q+  S+                                      
Sbjct: 340 TCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGA 399

Query: 367 --------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                         + V++++V +Y KC  I++A ++F+ +   D V W  L+  YA  G
Sbjct: 400 QFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFG 459

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITW 471
           ++ E   LF +M   G+ P+ +++  V+    R G + +  D F  MQ   G+ P    +
Sbjct: 460 KAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHY 519

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           T +I   +++    EA  F ++M  +   P        LS+C    ++  G+     L+ 
Sbjct: 520 TCMIDLYSRSGRFKEAEEFIKQMPHS---PDAFGWATLLSSCRLRGNMEIGKWAAENLLE 576

Query: 532 HDLCLPTPIVTSLVDMYAKCGN 553
            D   P   V  L  M+A  G 
Sbjct: 577 TDPQNPASYVL-LCSMHAAKGQ 597



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 168/325 (51%), Gaps = 16/325 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ++ L++     EA+D+   M+     I    +G +L  C     +  G+QIHA I +   
Sbjct: 250 VTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT-- 307

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
           ++  N +V + LV  Y+KC ++ +A  +F R+  +N+ SW A+I    +   SE+A+  F
Sbjct: 308 WYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAF 367

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EMQ DG+ PD+F L +V+ +C  L  +  G   H   L  G    + V+++L+ +YGKC
Sbjct: 368 SEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKC 427

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E+A ++FD M   + V+W +++ GY Q G  +E I +F +M   G++P  V+   +L
Sbjct: 428 GSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVL 487

Query: 291 SASANL-------DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           SA +         D  D  ++ H +  I+    D+   + +I+ YS+ G  ++AE    +
Sbjct: 488 SACSRAGLVEKGCDYFDSMQKDHGIVPID----DHY--TCMIDLYSRSGRFKEAEEFIKQ 541

Query: 344 MVER-DIVTWNLLIASYVQSGQSDV 367
           M    D   W  L++S    G  ++
Sbjct: 542 MPHSPDAFGWATLLSSCRLRGNMEI 566


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 180/512 (35%), Positives = 284/512 (55%), Gaps = 36/512 (7%)

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           G+QAHA  V++G++ +  L + ++  Y+  G L+ A VVF R+     + +N +I +Y +
Sbjct: 96  GQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTR 155

Query: 362 SGQSDV------------------------VVASSIVDMYAKCERIDNAKQVFNSIILRD 397
            G                             V  S  D+   C       Q     +  D
Sbjct: 156 HGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGD 215

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFL 457
             +  +L+  Y   G  G+A +LF +M    I  ++ SWN++I G+++ G++  A+D+F 
Sbjct: 216 FYVGASLIDMYVKCGVIGDARKLFDKM----IVRDMASWNALIAGYMKEGEIGVAEDLFE 271

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG--IKPSTTTITCALSACTD 515
           +M+      N+++WT +ISG TQN    +A+  F EML+ G  +KP+  TI   L AC  
Sbjct: 272 RME----HRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQ 327

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI--SPSKELPVYN 573
            A+L  GR IH +     L L + + T+L  MYAKC ++ +A+  FD+     K L  +N
Sbjct: 328 SAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWN 387

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            MI+ YA HG  VEA+++F+N+ + G+ PD++TF  +L+ CSH+GL++ GL  F  M + 
Sbjct: 388 TMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTI 447

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           H V+P +EH+ CVV+LL R G L EA  +I  MP      + G+LL+ C      E+AE 
Sbjct: 448 HSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAEL 507

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            +  L  LEPDN GNYV LSN YA +G W EV ++R ++K +G++K+PGCSWI+I  + H
Sbjct: 508 AARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSH 567

Query: 754 VFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           +F+  D+SHP+ +EIY  L  L   +++   +
Sbjct: 568 LFMGADKSHPQAKEIYKFLEALPEKIKMAGYI 599



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 128/438 (29%), Positives = 200/438 (45%), Gaps = 58/438 (13%)

Query: 79  PEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRL 138
           P  Y  + Q       +  GQQ HA+I+ +G     N ++  K+V  YA    LD A  +
Sbjct: 77  PSSYAPIFQFLTRHNFIKLGQQAHAQIVLHG--LQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 139 FCRLRVKNVFSWAAIIGLNCRVGLSEKA---LIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
           F R+   +   + +II    R G        L  +  M   G+  DNF LP VLK+C  L
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA---------- 245
             V  GR VHG  L+VG +G  +V +SLIDMY KCG + +ARK+FD MI           
Sbjct: 195 SRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALI 254

Query: 246 ---------------------RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE--PT 282
                                RN+V+W +MI GY QNG  E+A+ +F EM  +G E  P 
Sbjct: 255 AGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPN 314

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
            V++ S+L A A   AL+ G++ H  A   G+ L++ + +++   Y+K   L +A   F 
Sbjct: 315 WVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFD 374

Query: 343 RMVE--RDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
            + +  ++++ WN +I +Y   G    V A SI +             +  + +  D V 
Sbjct: 375 MIAQNGKNLIAWNTMITAYASHGCG--VEAVSIFE------------NMLRAGVQPDAVT 420

Query: 401 WNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           +  LL+  +  G        F  M  +  + P +  +  V+    R G++ EAK++  QM
Sbjct: 421 FMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQM 480

Query: 460 QSLGVQPNLITWTTLISG 477
               +Q     W  L++ 
Sbjct: 481 P---MQAGPSVWGALLAA 495



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 109/251 (43%), Gaps = 23/251 (9%)

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           ++ G+  H  ++ H L     +   +V MYA  G++  A  VFD   +    +YN++I  
Sbjct: 93  IKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRA 152

Query: 579 YAMHG---LAVEALALFKNLQQKGIDPDSITFTNILNACSH-----AGLVNEGLELFVGM 630
           Y  HG        L  +  +   G+  D+ T   +L +C+       G    G  L VG+
Sbjct: 153 YTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGL 212

Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETEL 690
             D  V  S+      +++  +CG + +A ++   M    D     +L++  +K  E  +
Sbjct: 213 EGDFYVGASL------IDMYVKCGVIGDARKLFDKMIVR-DMASWNALIAGYMKEGEIGV 265

Query: 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGE 750
           AE + E   ++E  N  ++ A+ + Y  +G   +   + D M + G    P  +W+ I  
Sbjct: 266 AEDLFE---RMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKP--NWVTI-- 318

Query: 751 ELHVFVACDRS 761
            + V  AC +S
Sbjct: 319 -VSVLPACAQS 328


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 192/643 (29%), Positives = 321/643 (49%), Gaps = 82/643 (12%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M    + PD    P VL++C +   VGFGR +HGY++K+GFD    VA++L +MY +C +
Sbjct: 1   MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE 60

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
            E A ++FD    +++   +S+     QN   E   RVF  M  E + P   +  ++L  
Sbjct: 61  FENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRF 120

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            A L+++   K  H +A+++ +                                      
Sbjct: 121 IAGLNSIQLAKIVHCIAIVSKL-------------------------------------- 142

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                        D++V ++++ +Y+K   + +A+++F+ +  +D V+WN ++AAYA  G
Sbjct: 143 -----------SGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREG 191

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGF----------------LRNGQ------MN 450
           +  E   LF  M   GI  ++ +   VI                   LRNG        N
Sbjct: 192 KPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHN 251

Query: 451 EAKDMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
              DM+ + + L             ++I+W+ +I G  +N     A+  F +M   GI+ 
Sbjct: 252 SLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQA 311

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
               +   L A   + +L N + +HGY ++  L     + T+L+  YAKCG+I  A+R+F
Sbjct: 312 DFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLF 371

Query: 562 DISP--SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           +      K+L ++N+MIS +A HG   +   L+  ++     PD +TF  +L AC ++GL
Sbjct: 372 EEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGL 431

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           V +G E F  M   +  +PS EH+ C+VNLL R G + EA  ++  MP  PDA + G LL
Sbjct: 432 VEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLL 491

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           S C     ++LAE+ +E L+ +EP N GNY+ LSN YAA+G+W+ V+++R  ++ KGL+K
Sbjct: 492 SACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKK 551

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
            PGCSW++I   +  F   D++HP+  +IY  L  L + ++ V
Sbjct: 552 IPGCSWLEINGHVTEFRVADQTHPRAGDIYTILGNLELEIKEV 594



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 217/462 (46%), Gaps = 28/462 (6%)

Query: 70  MKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG-DFFARNEYVETKLVVFYAK 128
           M  ++     E Y  +L+ C    ++  G+ IH  ++K G D F   + V T L   Y +
Sbjct: 1   MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLF---DVVATALAEMYEE 57

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188
           C   + A +LF +  VK++   +++     +    E     F  M  + + PD+F   N+
Sbjct: 58  CIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNL 117

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           L+    L  +   + VH   +     G + V ++++ +Y K   L +ARK+FD M  ++ 
Sbjct: 118 LRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDR 177

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
           V WN MI  Y + G   E + +F  M   G+     +   ++S+ A L  +D GKQ HA 
Sbjct: 178 VVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAH 237

Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS--- 365
            + NG +    + +S+I+ Y +  +L+ A  +F+ M ++ +++W+ +I  YV++GQS   
Sbjct: 238 ILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTA 297

Query: 366 --------------DVVVASSIVDMYAKCERIDNAKQVFN---SIILRDVVLWNT-LLAA 407
                         D V+  +I+  +     ++N K +      + L  +   NT LL  
Sbjct: 298 LSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLIT 357

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
           YA  G    A RLF + +++    ++I WNS+I     +G  ++   ++ +M+    +P+
Sbjct: 358 YAKCGSIEMAQRLFEEEKID--DKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPD 415

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITC 508
            +T+  L++    +    +   FF+EM E+ G +PS     C
Sbjct: 416 QVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYAC 457



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 187/363 (51%), Gaps = 20/363 (5%)

Query: 118 VETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177
           V T ++  Y+K  +L  A +LF ++  K+   W  +I    R G   + L  F  M   G
Sbjct: 148 VNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSG 207

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           +  D F    V+ +   L  V +G+  H ++L+ G D  V V +SLIDMY +C  L+ A 
Sbjct: 208 IRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSAC 267

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
           K+F+ M  ++V++W++MI GYV+NG +  A+ +F +M  +G++   V + +IL A  ++ 
Sbjct: 268 KIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIG 327

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF--SRMVERDIVTWNLL 355
           AL+  K  H  ++  G+     L ++++  Y+K G +E A+ +F   ++ ++D++ WN +
Sbjct: 328 ALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSM 387

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
           I+++   G             +++C ++ N  +  NS    D V +  LL A  + G   
Sbjct: 388 ISAHANHGD------------WSQCFKLYNRMKCSNS--KPDQVTFLGLLTACVNSGLVE 433

Query: 416 EASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
           +    F +M +  G  P+   +  ++    R G ++EA ++   ++++ ++P+   W  L
Sbjct: 434 KGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGEL---VKNMPIKPDARVWGPL 490

Query: 475 ISG 477
           +S 
Sbjct: 491 LSA 493


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 198/657 (30%), Positives = 327/657 (49%), Gaps = 86/657 (13%)

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           ++P      ++LK  GA   +   + +H +++  G    + + S L+  Y  CG +  AR
Sbjct: 17  LAPKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLLS-IDIRSVLVATYAHCGYVHNAR 75

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT-LEGVEPTRVSVTSILSASANL 296
           K+FD +  R  + +N MI  Y+  G   EA++VF EM   +   P   +   ++ A + L
Sbjct: 76  KLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSEL 135

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
             ++ G+  H + +++       + +S++  Y   G +E+A  VF  M E+ +V+WN +I
Sbjct: 136 LLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMI 195

Query: 357 ASYVQSGQSDV------------------------------------------------- 367
             Y ++G ++                                                  
Sbjct: 196 NGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLG 255

Query: 368 --VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
             +V++++VDMYAKC  +D A+ VF++++ RDVV W +++  Y   G +  A  LF  MQ
Sbjct: 256 KKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQ 315

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAK----------------------DMFLQMQSLG 463
           +EG+ PN ++   ++L       + + +                      DM+ +   LG
Sbjct: 316 IEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLG 375

Query: 464 VQPNLIT---------WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +  ++ T         W  L+SG   N    EAI  F++ML  G++ +  T    L A  
Sbjct: 376 LSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYG 435

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVY 572
            +A L+    I+ YL+R        + TSL+D+Y+KCG++  A ++F+  P   +++ V+
Sbjct: 436 ILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVW 495

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
           + +I+GY MHG    A++LFK + Q G+ P+ +TFT++L +CSHAG+V++GL LF  M  
Sbjct: 496 SIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLK 555

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
           DHQ  P+ +H+ C+V+LL R G +DEA  +I TMP  P   + G+LL  CV     EL E
Sbjct: 556 DHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHAVWGALLGACVMHENVELGE 615

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
             +  L +LEP N GNYV L+  YAA GRW +   VR  M + GLRK P  S I+ G
Sbjct: 616 VAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMDDIGLRKAPAHSLIEAG 672


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 204/674 (30%), Positives = 345/674 (51%), Gaps = 99/674 (14%)

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           +   + +H  +L +G    V + + L+ +Y   GDL  +   F  +  +N+ +WNSM+  
Sbjct: 64  INVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSA 123

Query: 258 YVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           YV+ G   +++    E+ +L GV P   +   +L A     +L +G++ H   +  G E 
Sbjct: 124 YVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL---SLADGEKMHCWVLKMGFEH 180

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------- 363
           D  + +S+I+ YS+ G +E A  VF  M  RD+ +WN +I+ + Q+G             
Sbjct: 181 DVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMK 240

Query: 364 ---------------------------------------QSDVVVASSIVDMYAKCERID 384
                                                  +SDV V++++++MY+K  R+ 
Sbjct: 241 TEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQ 300

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS--------- 435
           +A++VF+ + +RD+V WN+++AAY        A   F +M   G+ P++++         
Sbjct: 301 DAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFG 360

Query: 436 -------------------W--------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
                              W        N+++  + + G ++ A+ +F Q+ S  V    
Sbjct: 361 QLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDV---- 416

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETG--IKPSTTTITCALSACTDVASLRNGRAIH 526
           I+W TLI+G  QN   +EAI  +  M+E G  I P+  T    L A + V +L+ G  IH
Sbjct: 417 ISWNTLITGYAQNGLASEAIDAYN-MMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIH 475

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
           G LI++ L L   + T L+DMY KCG +  A  +F   P +    +NA+IS   +HG   
Sbjct: 476 GRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGE 535

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
           +AL LFK+++  G+  D ITF ++L+ACSH+GLV+E    F  M  ++++KP+++H+GC+
Sbjct: 536 KALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCM 595

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           V+L  R G L++A  ++  MP   DA I G+LL+ C      EL  + S+ LL+++ +N 
Sbjct: 596 VDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENV 655

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTE 766
           G YV LSN YA  G+W    +VR + +++GLRK PG S + +G  + VF A ++SHP+  
Sbjct: 656 GYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCA 715

Query: 767 EIYATLALLGMHVR 780
           EIY  L +L   ++
Sbjct: 716 EIYEELRVLNAKMK 729


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 203/648 (31%), Positives = 335/648 (51%), Gaps = 76/648 (11%)

Query: 127 AKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
           ++   ++ A + F  L+ K + SW +I+      GL ++A   F EM E  V        
Sbjct: 28  SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV-------- 79

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
                   + W G    V GY+                    K   + EAR VF+ M  R
Sbjct: 80  --------VSWNGL---VSGYI--------------------KNRMIVEARNVFELMPER 108

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           NVV+W +M+ GY+Q G+  EA  +F+ M     E   VS T +         +D+G+   
Sbjct: 109 NVVSWTAMVKGYMQEGMVGEAESLFWRMP----ERNEVSWTVMFGG-----LIDDGRIDK 159

Query: 307 AVAVINGMELDNVLGSS-IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           A  + + M + +V+ S+ +I    + G +++A ++F  M ER++VTW  +I  Y Q+   
Sbjct: 160 ARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNN-- 217

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
                           R+D A+++F  +  +  V W ++L  Y   GR  +A   F  M 
Sbjct: 218 ----------------RVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMP 261

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
           ++     +I+ N++I+GF   G++++A+ +F  M+      +  TW  +I    +     
Sbjct: 262 MK----PVIACNAMIVGFGEVGEISKARRVFDLME----DRDNATWRGMIKAYERKGFEL 313

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
           EA+  F +M + G++PS  ++   LS C  +ASL+ GR +H +L+R        + + L+
Sbjct: 314 EALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLM 373

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
            MY KCG + +AK VFD   SK++ ++N++ISGYA HGL  EAL +F  +   G  P+ +
Sbjct: 374 TMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKV 433

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           T   IL ACS+AG + EGLE+F  M S   V P++EH+ C V++L R G +D+A+ +I +
Sbjct: 434 TLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIES 493

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           M   PDA + G+LL  C   +  +LAE  ++ L + EPDN G YV LS+  A+  +W +V
Sbjct: 494 MTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDV 553

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD-RSHPKTEEIYATL 772
           + VR  M+   + K PGCSWI++G+++H+F     ++HP+   I   L
Sbjct: 554 AVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMML 601



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 166/347 (47%), Gaps = 51/347 (14%)

Query: 49  HQISSLSKEKQIREAVDLLTEMKCRN-----------------------FQIGPEIYGEL 85
           + I  L +E ++ EA  +  EM+ RN                       F++ PE     
Sbjct: 177 NMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE----- 231

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK-------LVVFYAKCDALDVASRL 138
            +  V    M  G  +  RI    +FF   E +  K       ++V + +   +  A R+
Sbjct: 232 -KTEVSWTSMLLGYTLSGRIEDAEEFF---EVMPMKPVIACNAMIVGFGEVGEISKARRV 287

Query: 139 FCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
           F  +  ++  +W  +I    R G   +AL  F +MQ+ GV P    L ++L  C  L  +
Sbjct: 288 FDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASL 347

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
            +GR VH ++++  FD  V+VAS L+ MY KCG+L +A+ VFD   +++++ WNS+I GY
Sbjct: 348 QYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGY 407

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
             +GL EEA+++F+EM   G  P +V++ +IL+A +    L+EG     + +   ME   
Sbjct: 408 ASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEG-----LEIFESMESKF 462

Query: 319 VLGSSIINFYSKVGLLEDA-------EVVFSRMVERDIVTWNLLIAS 358
            +  ++ ++   V +L  A       E++ S  ++ D   W  L+ +
Sbjct: 463 CVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGA 509



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 130/546 (23%), Positives = 222/546 (40%), Gaps = 100/546 (18%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           S+ S+   YF   + L KE     A  L  EM  RN       +  L+ G +  R +   
Sbjct: 50  SWNSIVSGYFS--NGLPKE-----ARQLFDEMSERNVVS----WNGLVSGYIKNRMIVEA 98

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA------ 152
           + +   + +      RN    T +V  Y +   +  A  LF R+  +N  SW        
Sbjct: 99  RNVFELMPE------RNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLI 152

Query: 153 -------------------------IIGLNCRVGLSEKALIGFVEMQE----------DG 177
                                    +IG  CR G  ++A + F EM+E           G
Sbjct: 153 DDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITG 212

Query: 178 VSPDNFV-----LPNVLKACGALGWVGFGRAVHGYVLKVGFDGC-----------VFVAS 221
              +N V     L  V+     + W      + GY L    +             V   +
Sbjct: 213 YRQNNRVDVARKLFEVMPEKTEVSWTSM---LLGYTLSGRIEDAEEFFEVMPMKPVIACN 269

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           ++I  +G+ G++ +AR+VFD M  R+   W  MI  Y + G   EA+ +F +M  +GV P
Sbjct: 270 AMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRP 329

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
           +  S+ SILS  A L +L  G+Q HA  V    + D  + S ++  Y K G L  A++VF
Sbjct: 330 SFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVF 389

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
            R   +DI+ WN +I+ Y   G  +              E +    ++ +S  + + V  
Sbjct: 390 DRFSSKDIIMWNSIISGYASHGLGE--------------EALKIFHEMPSSGTMPNKVTL 435

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
             +L A +  G+  E   +F  M+ +  ++P +  ++  +    R GQ+++A ++   ++
Sbjct: 436 IAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMEL---IE 492

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEA-----ILFFQEMLETGIKPSTTTITCALSACTD 515
           S+ ++P+   W  L+     +S  + A      LF  E    G     ++I  + S   D
Sbjct: 493 SMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGD 552

Query: 516 VASLRN 521
           VA +R 
Sbjct: 553 VAVVRK 558



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 93/467 (19%), Positives = 188/467 (40%), Gaps = 91/467 (19%)

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           +I+ A++ F+S+  + +  WN++++ Y   G   EA +LF +M       N++SWN ++ 
Sbjct: 32  KINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMS----ERNVVSWNGLVS 87

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
           G+++N  + EA+++F  M     + N+++WT ++ G  Q     EA   F  M E     
Sbjct: 88  GYIKNRMIVEARNVFELMP----ERNVVSWTAMVKGYMQEGMVGEAESLFWRMPER---- 139

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV-------------------- 541
           +  + T       D   +   R ++  +   D+   T ++                    
Sbjct: 140 NEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMR 199

Query: 542 -------TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
                  T+++  Y +   +  A+++F++ P K    + +M+ GY + G   +A   F+ 
Sbjct: 200 ERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEV 259

Query: 595 LQQKGI---------------------------DPDSITFTNILNACSHAGLVNEGLELF 627
           +  K +                           D D+ T+  ++ A    G   E L+LF
Sbjct: 260 MPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLF 319

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNL------DEALRVILTMPCDPDAHIIGSLLST 681
             M     V+PS   F  ++++LS C  L       +    ++    D D ++   L++ 
Sbjct: 320 AQM-QKQGVRPS---FPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTM 375

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
            VK  E   A+ + +   +    +   + ++ + YA+ G   E  ++   M   G   N 
Sbjct: 376 YVKCGELVKAKLVFD---RFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNK 432

Query: 742 --------GCSWI-QIGEELHVFVACDRSH---PKTEEIYATLALLG 776
                    CS+  ++ E L +F + +      P  E    T+ +LG
Sbjct: 433 VTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLG 479


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 208/701 (29%), Positives = 351/701 (50%), Gaps = 105/701 (14%)

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
            Y KC ++  A  +F  +   N  SW  I+    R G   +AL  +  M  +G+ PD  +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLK---VGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
               +  C +   +  G+ +H  +L+   + FD  + + ++LI MY +C DLE ARK FD
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFD--IILGTALITMYARCRDLELARKTFD 118

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM---TLEGVEPTRVSVTSILSASANLDA 298
            M  + +V WN++I GY +NG +  A++++ +M   + EG++P  ++ +S L A   +  
Sbjct: 119 EMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGD 178

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           + +G++                                                  + A 
Sbjct: 179 ISQGRE--------------------------------------------------IEAR 188

Query: 359 YVQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
            V SG  SD +V +++++MY+KC  +++A++VF+ +  RDV+ WNT+++ YA  G + +A
Sbjct: 189 TVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQA 248

Query: 418 SRLFYQMQLEGISPNIISW------------------------------NSVILGFLRN- 446
             LF +M      PN++++                              + VI   L N 
Sbjct: 249 LELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNM 308

Query: 447 -----GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
                  + EA+ +F +M++     ++ITW  LI    Q     +A+  F++M    + P
Sbjct: 309 YTKCSSSLEEARQVFERMRT----RDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAP 364

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV-TSLVDMYAKCGNIHQAKRV 560
           +  T++  LSAC  + + R G+A+H  LI    C    ++  SL++MY +CG++     V
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKAVHA-LIASGRCKADVVLENSLMNMYNRCGSLDDTVGV 423

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F     K L  ++ +I+ YA HG +   L  F  L Q+G+  D +T  + L+ACSH G++
Sbjct: 424 FAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGML 483

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EG++ F+ M  DH + P   HF C+V+LLSR G L+ A  +I  MP  PDA    SLLS
Sbjct: 484 KEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLS 543

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVA-LSNAYAASGRWNEVSQVRDIMKEKGLRK 739
            C   N+T+ A  +++ L +LE ++  + V  LSN YA +GRW++V + R+    +  RK
Sbjct: 544 GCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN---RRAARK 600

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           NPGCS+I+I + +H FVA D+SHP+ E I A +  L   ++
Sbjct: 601 NPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMK 641



 Score =  221 bits (564), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 161/623 (25%), Positives = 276/623 (44%), Gaps = 74/623 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +++ ++    REA+     M     +    ++   +  C   +D+  GQ +HA IL+   
Sbjct: 30  VAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILET-R 88

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +  + T L+  YA+C  L++A + F  +  K + +W A+I    R G    AL  +
Sbjct: 89  LLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIY 148

Query: 171 VEM---QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
            +M     +G+ PD     + L AC  +G +  GR +    +  G+     V ++LI+MY
Sbjct: 149 QDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMY 208

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            KCG LE ARKVFD +  R+V+AWN+MI GY + G   +A+ +F  M     +P  V+  
Sbjct: 209 SKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFI 268

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV-GLLEDAEVVFSRMVE 346
            +L+A  NL+ L++G+  H     +G E D V+G+ ++N Y+K    LE+A  VF RM  
Sbjct: 269 GLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRT 328

Query: 347 RDIVTWNLLIASYVQSGQ------------------------------------------ 364
           RD++TWN+LI +YVQ GQ                                          
Sbjct: 329 RDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAV 388

Query: 365 ----------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
                     +DVV+ +S+++MY +C  +D+   VF +I  + +V W+TL+AAYA  G S
Sbjct: 389 HALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHS 448

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTT 473
                 F+++  EG++ + ++  S +      G + E    FL M    G+ P+   +  
Sbjct: 449 RTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLC 508

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           ++  L++      A     +M      P     T  LS C      +    +   L   +
Sbjct: 509 MVDLLSRAGRLEAAENLIHDM---PFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELE 565

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP---------VYNAMISGYAMHG- 583
                  VT L ++YA+ G     ++  +   +++ P           +  ++G   H  
Sbjct: 566 SEDEHSTVTLLSNVYAEAGRWDDVRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPE 625

Query: 584 ---LAVEALALFKNLQQKGIDPD 603
              +A E   L K ++  G  PD
Sbjct: 626 EELIAAEIKRLSKQMKDAGYVPD 648


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 211/721 (29%), Positives = 352/721 (48%), Gaps = 102/721 (14%)

Query: 135 ASRLFCR---LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           ++RL  R   LR+++ F W ++       GL  +AL  +  M   GV PD+   P  L A
Sbjct: 56  SARLILRHHPLRLRSAFLWNSLSRALASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHA 115

Query: 192 CGALGWVGF-----GRAVHGYVLKVGFD-GCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
             A           G  +H   L+ G     VF  ++L+  Y   G   +AR+VFD M A
Sbjct: 116 AAAAVVAEAEHPAKGAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPA 175

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           R++V+WNS++   + NG+ E+A R    M   G+     S+ S++ A         G   
Sbjct: 176 RDIVSWNSLVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSV 235

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-- 363
           H + + +G++    LG+++++ Y K G LE +  VF+ M E++ V+WN  +  +  +G  
Sbjct: 236 HGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFH 295

Query: 364 --------------------------------------------------QSDVVVASSI 373
                                                             +SD+ +A+S+
Sbjct: 296 EDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSL 355

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN- 432
           +DMYAK   ++ A  +F +I  R+VV WN ++A  A  G   EA  L  +MQ  G  PN 
Sbjct: 356 MDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNS 415

Query: 433 ---------------------IISW-------------NSVILGFLRNGQMNEAKDMFLQ 458
                                I +W             N++I  + + GQ++ A+D+F +
Sbjct: 416 FTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR 475

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
            +      + +++ TLI G +Q+ C  E++  FQ+M   GI+    +    LSAC ++++
Sbjct: 476 SEK-----DDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSA 530

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
            + G+ IHG L+R  L     +  SL+D+Y K G +  A ++F+    K++  +N MI G
Sbjct: 531 FKQGKEIHGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILG 590

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           Y MHG    A  LF  ++  G+D D +++  +L+ACSH GLV+ G + F  M +   +KP
Sbjct: 591 YGMHGQIDVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIA-QNIKP 649

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
              H+ C+V+LL R G L E++ +I  MP   ++ + G+LL +C    + ELA   +EHL
Sbjct: 650 QQMHYACMVDLLGRAGQLSESVEIITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHL 709

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
            +L+P++ G Y  L N Y+ SG WNE ++++ +MK + ++KNP  SW+Q G +L  F+  
Sbjct: 710 FELKPEHSGYYTLLRNMYSESGMWNEANEIKTLMKSRKVQKNPAYSWVQSGNKLQAFLVG 769

Query: 759 D 759
           D
Sbjct: 770 D 770



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 219/445 (49%), Gaps = 28/445 (6%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           ++  C  +RD   G  +H  +LK+G     N  +   LV  Y K   L+ + R+F  ++ 
Sbjct: 219 VVPACGTERDEGFGLSVHGLVLKSGLDSVVN--LGNALVDMYGKFGDLESSMRVFNGMQE 276

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           KN  SW + +G     G  E  L  F  M E  V+P +  L ++L A   LG+   G+ V
Sbjct: 277 KNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEV 336

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HGY ++   +  +F+A+SL+DMY K G LE+A  +F+ +  RNVV+WN+MI    QNG  
Sbjct: 337 HGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAE 396

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
            EA  +  EM   G  P   ++ ++L A + + ++  GKQ HA ++   +  D  + +++
Sbjct: 397 TEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNAL 456

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDV 367
           I+ Y+K G L  A+ +F R  E+D V++N LI  Y QS                  + D 
Sbjct: 457 IDVYAKCGQLSVAQDIFDR-SEKDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDA 515

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDV----VLWNTLLAAYADLGRSGEASRLFYQ 423
           V     +   A        K++   ++ R +     L N+LL  Y   G    AS++F +
Sbjct: 516 VSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNR 575

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           +  +    ++ SWN++ILG+  +GQ++ A ++F  M+  GV  + +++  ++S  +    
Sbjct: 576 ITRK----DVASWNTMILGYGMHGQIDVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGL 631

Query: 484 GNEAILFFQEMLETGIKPSTTTITC 508
            +    +F +M+   IKP      C
Sbjct: 632 VDRGKKYFSQMIAQNIKPQQMHYAC 656


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  328 bits (842), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 200/681 (29%), Positives = 334/681 (49%), Gaps = 85/681 (12%)

Query: 135  ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
            A ++F   +  N+F+W   +      G    A+  F  +    +  D+  L  +L A   
Sbjct: 847  AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVG 906

Query: 195  LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
               +  G  +H  V+K  F   V V++SL++MY K G +  A K F      ++++WN+M
Sbjct: 907  ADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTM 966

Query: 255  IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
            I  Y QN L  EAI  F ++  +G++P + ++ S+L A +     DEG+           
Sbjct: 967  ISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS---TGDEGEYF--------- 1014

Query: 315  ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIV 374
                 LGS +  +  K G++ D+                               V+++++
Sbjct: 1015 ----TLGSQVHVYAIKCGIINDS------------------------------FVSTALI 1040

Query: 375  DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
            D+Y+K  ++D A+ + +     D+  WN ++  Y    +S +A   F  M   GI  + I
Sbjct: 1041 DLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEI 1100

Query: 435  SWNSVI---------------------LGF--------------LRNGQMNEAKDMFLQM 459
            +  + I                     LGF              ++ G M  A ++F ++
Sbjct: 1101 TLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEI 1160

Query: 460  QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
                 +P+ + WTT+ISG  +N   + A+  +  M  +G++P   T    + A + + +L
Sbjct: 1161 S----RPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTAL 1216

Query: 520  RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
              G+ IH  +++ D  L   + TSLVDMY KCG++  A RVF     +++  +NAM+ G 
Sbjct: 1217 EQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGL 1276

Query: 580  AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
            A HG   EAL LF+ +Q  GI PD +TF  +L+ACSH+GL +E  + F  MF  + + P 
Sbjct: 1277 AQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPE 1336

Query: 640  MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
            +EH+ C+V+ L R G + EA  VI +MP    A +  +LL  C    + E A+ +++ LL
Sbjct: 1337 IEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLL 1396

Query: 700  QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
             L+P +   YV LSN YAAS +W++V+  R++MK K ++K+PG SWI +  ++H+FV  D
Sbjct: 1397 ALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDD 1456

Query: 760  RSHPKTEEIYATLALLGMHVR 780
            RSHP+   IY  +  L   +R
Sbjct: 1457 RSHPQASLIYEKIEDLMKRIR 1477



 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 158/646 (24%), Positives = 301/646 (46%), Gaps = 83/646 (12%)

Query: 94   DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
            D+  G++ HARI+ +GD   R  Y+   L+  Y+KC +L  A ++F +   +++ +W +I
Sbjct: 626  DLKLGKRAHARIVTSGDLPDR--YLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 154  IGLNCRVGLS--EKALIGFVE---MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208
            +    +   S  E  L GF     ++E G S     L  +LK C   G+V     VHGY 
Sbjct: 684  LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 209  LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
            +K+GF+  +FV+ +L+++Y K G + +AR +FD M  R+ V WN M+  YV+N   +EA+
Sbjct: 744  VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 269  RVFYEMTLEGVEPTRVSVTSILSA-----SANLDALDEGKQAHAVAVINGMELDNVLG-- 321
            R F      G  P   ++  ++       S N     E  +A+A+ +    +  N+    
Sbjct: 804  RFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWN 863

Query: 322  ---SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------ 366
               +  ++    V  ++  + +    +  D VT  +++++ V +   D            
Sbjct: 864  KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKS 923

Query: 367  -----VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
                 V V++S+++MY+K   +  A++ F +    D++ WNT++++YA      EA   F
Sbjct: 924  SFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTF 983

Query: 422  YQMQLEGISPNIISWNSVI-------------LG-------------------------F 443
              +  +G+ P+  +  SV+             LG                         +
Sbjct: 984  RDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLY 1043

Query: 444  LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
             + G+M+EA+ +           +L +W  ++ G  +++   +A+  F  M E GI    
Sbjct: 1044 SKGGKMDEAEFLLHGKYDF----DLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDE 1099

Query: 504  TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-D 562
             T+  A+ A   + +L+ G+ I  Y I+        + + ++DMY KCG++  A  +F +
Sbjct: 1100 ITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGE 1159

Query: 563  ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
            IS   E+  +  MISGY  +G    AL+++  ++  G+ PD  TF  ++ A S    + +
Sbjct: 1160 ISRPDEV-AWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQ 1218

Query: 623  GLELFVGMFSDHQVKPSMEHF--GCVVNLLSRCGNLDEALRVILTM 666
            G ++   +    ++  S++HF    +V++  +CG++ +A RV   M
Sbjct: 1219 GKQIHANVV---KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKM 1261



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 193/368 (52%), Gaps = 27/368 (7%)

Query: 98   GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
            G Q+H   +K G     + +V T L+  Y+K   +D A  L       ++ SW AI+   
Sbjct: 1017 GSQVHVYAIKCG--IINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGY 1074

Query: 158  CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
             +   S KAL  F  M E G+  D   L   +KA G L  +  G+ +  Y +K+GF+  +
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDL 1134

Query: 218  FVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            +V+S ++DMY KCGD+  A ++F G I+R + VAW +MI GY++NG  + A+ V++ M +
Sbjct: 1135 WVSSGVLDMYIKCGDMPNALELF-GEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRV 1193

Query: 277  EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
             GV+P   +  +++ AS+ L AL++GKQ HA  V     LD+ +G+S+++ Y K G ++D
Sbjct: 1194 SGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQD 1253

Query: 337  AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI--- 393
            A  VF +M  R +V WN ++    Q G                   +D A  +F ++   
Sbjct: 1254 AYRVFRKMDVRKVVFWNAMLLGLAQHGH------------------VDEALNLFRTMQSN 1295

Query: 394  -ILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNE 451
             I  D V +  +L+A +  G   EA + F  M +  GI+P I  ++ ++    R G++ E
Sbjct: 1296 GIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQE 1355

Query: 452  AKDMFLQM 459
            A+++   M
Sbjct: 1356 AENVIASM 1363



 Score =  172 bits (435), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 144/551 (26%), Positives = 236/551 (42%), Gaps = 87/551 (15%)

Query: 194  ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
            A+  +  G+  H  ++  G     ++ ++LI MY KCG L  AR+VFD    R++V WNS
Sbjct: 623  AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNS 682

Query: 254  MIVGYVQNGLNE-----EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
            ++  Y Q   +      E  R+F  +   G   TR+++  +L        +   +  H  
Sbjct: 683  ILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGY 742

Query: 309  AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVV 368
            AV  G ELD  +  +++N Y K GL+  A ++F +M ERD V WN+++ +YV++   D  
Sbjct: 743  AVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQD-- 800

Query: 369  VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
                                                           EA R F      G
Sbjct: 801  -----------------------------------------------EALRFFSAFHRSG 813

Query: 429  ISPNIISWNSVILGF------LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
              P+  + + VI G        R     + K   ++M       N+  W   ++      
Sbjct: 814  FXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAG 873

Query: 483  CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
                AI  F+ +L + I   + T+   LSA      L  G  IH  +I+       P+  
Sbjct: 874  QIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSN 933

Query: 543  SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
            SL++MY+K G ++ A++ F  SP  +L  +N MIS YA + L +EA+  F++L + G+ P
Sbjct: 934  SLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKP 993

Query: 603  DSITFTNILNACSHAGLVNEGLELFV------------GMFSDHQVKPSMEHFGCVVNLL 650
            D  T  ++L ACS     +EG E F             G+ +D  V  ++      ++L 
Sbjct: 994  DQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIKCGIINDSFVSTAL------IDLY 1043

Query: 651  SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA-EYISEHLLQLEPDNPGNY 709
            S+ G +DEA   +L    D D     +++   +KSN++  A E+ S   L  E   P + 
Sbjct: 1044 SKGGKMDEA-EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFS---LMHEMGIPIDE 1099

Query: 710  VALSNAYAASG 720
            + L+ A  ASG
Sbjct: 1100 ITLATAIKASG 1110


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 200/681 (29%), Positives = 334/681 (49%), Gaps = 85/681 (12%)

Query: 135  ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
            A ++F   +  N+F+W   +      G    A+  F  +    +  D+  L  +L A   
Sbjct: 847  AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVG 906

Query: 195  LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
               +  G  +H  V+K  F   V V++SL++MY K G +  A K F      ++++WN+M
Sbjct: 907  ADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTM 966

Query: 255  IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
            I  Y QN L  EAI  F ++  +G++P + ++ S+L A +     DEG+           
Sbjct: 967  ISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS---TGDEGEYF--------- 1014

Query: 315  ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIV 374
                 LGS +  +  K G++ D+                               V+++++
Sbjct: 1015 ----TLGSQVHVYAIKCGIINDS------------------------------FVSTALI 1040

Query: 375  DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
            D+Y+K  ++D A+ + +     D+  WN ++  Y    +S +A   F  M   GI  + I
Sbjct: 1041 DLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEI 1100

Query: 435  SWNSVI---------------------LGF--------------LRNGQMNEAKDMFLQM 459
            +  + I                     LGF              ++ G M  A ++F ++
Sbjct: 1101 TLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEI 1160

Query: 460  QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
                 +P+ + WTT+ISG  +N   + A+  +  M  +G++P   T    + A + + +L
Sbjct: 1161 S----RPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTAL 1216

Query: 520  RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
              G+ IH  +++ D  L   + TSLVDMY KCG++  A RVF     +++  +NAM+ G 
Sbjct: 1217 EQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGL 1276

Query: 580  AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
            A HG   EAL LF+ +Q  GI PD +TF  +L+ACSH+GL +E  + F  MF  + + P 
Sbjct: 1277 AQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPE 1336

Query: 640  MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
            +EH+ C+V+ L R G + EA  VI +MP    A +  +LL  C    + E A+ +++ LL
Sbjct: 1337 IEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLL 1396

Query: 700  QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
             L+P +   YV LSN YAAS +W++V+  R++MK K ++K+PG SWI +  ++H+FV  D
Sbjct: 1397 ALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDD 1456

Query: 760  RSHPKTEEIYATLALLGMHVR 780
            RSHP+   IY  +  L   +R
Sbjct: 1457 RSHPQASLIYEKIEDLMKRIR 1477



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 158/646 (24%), Positives = 301/646 (46%), Gaps = 83/646 (12%)

Query: 94   DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
            D+  G++ HARI+ +GD   R  Y+   L+  Y+KC +L  A ++F +   +++ +W +I
Sbjct: 626  DLKLGKRAHARIVTSGDLPDR--YLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 154  IGLNCRVGLS--EKALIGFVE---MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208
            +    +   S  E  L GF     ++E G S     L  +LK C   G+V     VHGY 
Sbjct: 684  LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 209  LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
            +K+GF+  +FV+ +L+++Y K G + +AR +FD M  R+ V WN M+  YV+N   +EA+
Sbjct: 744  VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 269  RVFYEMTLEGVEPTRVSVTSILSA-----SANLDALDEGKQAHAVAVINGMELDNVLG-- 321
            R F      G  P   ++  ++       S N     E  +A+A+ +    +  N+    
Sbjct: 804  RFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWN 863

Query: 322  ---SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------ 366
               +  ++    V  ++  + +    +  D VT  +++++ V +   D            
Sbjct: 864  KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKS 923

Query: 367  -----VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
                 V V++S+++MY+K   +  A++ F +    D++ WNT++++YA      EA   F
Sbjct: 924  SFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTF 983

Query: 422  YQMQLEGISPNIISWNSVI-------------LG-------------------------F 443
              +  +G+ P+  +  SV+             LG                         +
Sbjct: 984  RDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLY 1043

Query: 444  LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
             + G+M+EA+ +           +L +W  ++ G  +++   +A+  F  M E GI    
Sbjct: 1044 SKGGKMDEAEFLLHGKYDF----DLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDE 1099

Query: 504  TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-D 562
             T+  A+ A   + +L+ G+ I  Y I+        + + ++DMY KCG++  A  +F +
Sbjct: 1100 ITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGE 1159

Query: 563  ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
            IS   E+  +  MISGY  +G    AL+++  ++  G+ PD  TF  ++ A S    + +
Sbjct: 1160 ISRPDEV-AWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQ 1218

Query: 623  GLELFVGMFSDHQVKPSMEHF--GCVVNLLSRCGNLDEALRVILTM 666
            G ++   +    ++  S++HF    +V++  +CG++ +A RV   M
Sbjct: 1219 GKQIHANVV---KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKM 1261



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 193/368 (52%), Gaps = 27/368 (7%)

Query: 98   GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
            G Q+H   +K G     + +V T L+  Y+K   +D A  L       ++ SW AI+   
Sbjct: 1017 GSQVHVYAIKCG--IINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGY 1074

Query: 158  CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
             +   S KAL  F  M E G+  D   L   +KA G L  +  G+ +  Y +K+GF+  +
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDL 1134

Query: 218  FVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            +V+S ++DMY KCGD+  A ++F G I+R + VAW +MI GY++NG  + A+ V++ M +
Sbjct: 1135 WVSSGVLDMYIKCGDMPNALELF-GEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRV 1193

Query: 277  EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
             GV+P   +  +++ AS+ L AL++GKQ HA  V     LD+ +G+S+++ Y K G ++D
Sbjct: 1194 SGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQD 1253

Query: 337  AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI--- 393
            A  VF +M  R +V WN ++    Q G                   +D A  +F ++   
Sbjct: 1254 AYRVFRKMDVRKVVFWNAMLLGLAQHGH------------------VDEALNLFRTMQSN 1295

Query: 394  -ILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNE 451
             I  D V +  +L+A +  G   EA + F  M +  GI+P I  ++ ++    R G++ E
Sbjct: 1296 GIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQE 1355

Query: 452  AKDMFLQM 459
            A+++   M
Sbjct: 1356 AENVIASM 1363



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 144/551 (26%), Positives = 236/551 (42%), Gaps = 87/551 (15%)

Query: 194  ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
            A+  +  G+  H  ++  G     ++ ++LI MY KCG L  AR+VFD    R++V WNS
Sbjct: 623  AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNS 682

Query: 254  MIVGYVQNGLNE-----EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
            ++  Y Q   +      E  R+F  +   G   TR+++  +L        +   +  H  
Sbjct: 683  ILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGY 742

Query: 309  AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVV 368
            AV  G ELD  +  +++N Y K GL+  A ++F +M ERD V WN+++ +YV++   D  
Sbjct: 743  AVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQD-- 800

Query: 369  VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
                                                           EA R F      G
Sbjct: 801  -----------------------------------------------EALRFFSAFHRSG 813

Query: 429  ISPNIISWNSVILGF------LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
              P+  + + VI G        R     + K   ++M       N+  W   ++      
Sbjct: 814  FFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAG 873

Query: 483  CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
                AI  F+ +L + I   + T+   LSA      L  G  IH  +I+       P+  
Sbjct: 874  QIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSN 933

Query: 543  SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
            SL++MY+K G ++ A++ F  SP  +L  +N MIS YA + L +EA+  F++L + G+ P
Sbjct: 934  SLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKP 993

Query: 603  DSITFTNILNACSHAGLVNEGLELFV------------GMFSDHQVKPSMEHFGCVVNLL 650
            D  T  ++L ACS     +EG E F             G+ +D  V  ++      ++L 
Sbjct: 994  DQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIKCGIINDSFVSTAL------IDLY 1043

Query: 651  SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA-EYISEHLLQLEPDNPGNY 709
            S+ G +DEA   +L    D D     +++   +KSN++  A E+ S   L  E   P + 
Sbjct: 1044 SKGGKMDEA-EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFS---LMHEMGIPIDE 1099

Query: 710  VALSNAYAASG 720
            + L+ A  ASG
Sbjct: 1100 ITLATAIKASG 1110


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 202/651 (31%), Positives = 323/651 (49%), Gaps = 89/651 (13%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVF---VASSLIDMYGKCGDLEEARKVFDGM 243
           ++L+ C +   +   + +H + + +G     +   + SSL   Y  CG    ARK+FD +
Sbjct: 23  SLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDEL 82

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE-PTRVSVTSILSASANLDALDEG 302
              ++ +WN+MI  Y  +GL+ +A+ +F +M   G   P   +   ++ A  +    + G
Sbjct: 83  RNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMG 142

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY--- 359
              HA  V++G + D  + +S++  Y   G +E A  VF  M ER +V+WN +I  Y   
Sbjct: 143 ALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKN 202

Query: 360 -------------------------------------------------VQSGQSDVVVA 370
                                                            V++   D+ V 
Sbjct: 203 GCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVW 262

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           +S++DMYAKC  +D A+ +F  +  RDVV W T++  Y   G +  A  L   MQ E + 
Sbjct: 263 NSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVK 322

Query: 431 PNIISWNSVI-----LGFLRNG---------QMNEAK--------DMFLQMQSLGVQPNL 468
           PN ++  SV+     L  L++G         Q  E++        DM+ +  ++ +   +
Sbjct: 323 PNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRV 382

Query: 469 IT---------WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
            +         W  +ISG   N    +AI  F++ML   + P+  T+   L A   +  L
Sbjct: 383 FSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDL 442

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV--YNAMIS 577
           +  R +HGYLIR        + T L+D+Y+KCG++  A  +F+  P K+  +  ++A+I+
Sbjct: 443 QQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIA 502

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
           GY MHG    A++LF  + Q G+ P+ ITFT+IL+ACSHAGLV+EGL LF  M  D+Q+ 
Sbjct: 503 GYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMS 562

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
              +H+ CV++LL R G L+EA  +I TM   P+  + G+LL +CV     EL E  ++ 
Sbjct: 563 LRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKW 622

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           L +LEP N GNYV L+N Y+A GRW +   VR +M   GLRK P  S I++
Sbjct: 623 LFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEV 673


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  328 bits (841), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 193/618 (31%), Positives = 310/618 (50%), Gaps = 92/618 (14%)

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  +NVVAW S++ GY +NG  E A+ +F +M   GV P   +  + L A A+L AL  G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           +Q H++AV  G   D  +GS +I  YS+ G L  A+ VF RM   D+V +  LI+++ ++
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 363 GQ--------------------------------------------------SDVVVASS 372
           G+                                                    V  +++
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTA 180

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           ++D Y++      AK VF+S+  ++VV W +++  Y   GR  EA ++F  M  EG+ PN
Sbjct: 181 LIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPN 240

Query: 433 IISWNSVILG---------------------------------FLRNGQMNEAKDMFLQM 459
             +  S++LG                                 + R G + E + M  ++
Sbjct: 241 EFAL-SIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKI 299

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
           ++    P+L++WTT IS   QN  G +AI    +M   G  P+    +  LS+C DVASL
Sbjct: 300 EN----PDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASL 355

Query: 520 RNGRAIHGYLIRHDLCLPTPIVT--SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
             G   H   ++  L   + I T  +L++MY+KCG +  A+  FD+  + ++  +N++I 
Sbjct: 356 DQGMQFHCLALK--LGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIH 413

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
           G+A HG A +AL +F  ++  GI PD  TF  +L  C+H+G+V EG   F  M   +   
Sbjct: 414 GHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFT 473

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
           P+  H+ C++++L R G  DEALR+I  MP +PDA I  +LL++C      ++ +  ++ 
Sbjct: 474 PAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADR 533

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVA 757
           L++L   +  +YV +SN YA  G W +  +VR  M E G++K+ GCSWI+I  E+H F +
Sbjct: 534 LMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFAS 593

Query: 758 CDRSHPKTEEIYATLALL 775
            D SHP ++ IY  L  L
Sbjct: 594 RDMSHPNSDSIYQMLGEL 611



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 141/552 (25%), Positives = 277/552 (50%), Gaps = 55/552 (9%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L  C     +  G+Q+H+  ++ G  FA + ++ + L+  Y++C +L  A  +F R+   
Sbjct: 48  LVACADLGALRAGEQVHSLAVRAG--FAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSP 105

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           +V  + ++I   CR G  E A    ++M + G+ P+   +  +L AC  +     G+ +H
Sbjct: 106 DVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIH 161

Query: 206 GYVL-KVGFDG-CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           GY++ K+G     V+ +++LID Y + G+ + A+ VFD +  +NVV+W SM+  Y+++G 
Sbjct: 162 GYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGR 221

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
            EEA++VF +M  EGV+P   +++ +L A  ++     G+Q H  A+ + +  D  + ++
Sbjct: 222 LEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAIKHDLITDIRVSNA 278

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA------------- 370
           +++ Y + GL+E+ E + +++   D+V+W   I++  Q+G  +  +A             
Sbjct: 279 LLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPN 338

Query: 371 ----SSIVDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLF 421
               SS++   A    +D   Q F+ + L+     ++   N L+  Y+  G+ G A   F
Sbjct: 339 GYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAF 397

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
             M     + ++ SWNS+I G  ++G  N+A ++F +M+S G++P+  T+  ++ G   +
Sbjct: 398 DVMH----THDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHS 453

Query: 482 SCGNEAILFFQEMLET-GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
               E  LFF+ M++     P+ +   C +         RNGR      + +D+    P 
Sbjct: 454 GMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLG-----RNGRFDEALRMINDMPF-EPD 507

Query: 541 VTSLVDMYAKCGNIHQ--------AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
                 + A C  +H+        A R+ ++S  ++   Y  M + YAMHG   +A  + 
Sbjct: 508 ALIWKTLLASC-KLHRNLDIGKLAADRLMELS-DRDSASYVLMSNIYAMHGEWEDARKVR 565

Query: 593 KNLQQKGIDPDS 604
           + + + G+  D+
Sbjct: 566 RRMDETGVKKDA 577



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 212/434 (48%), Gaps = 31/434 (7%)

Query: 47  YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARIL 106
           Y   IS+  +  +   A + L +M  +  +        +L  C        GQQIH  ++
Sbjct: 110 YTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRVLGQQIHGYLI 165

Query: 107 KNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA 166
           K     +++ Y  T L+ FY++     +A  +F  L  KNV SW +++ L  R G  E+A
Sbjct: 166 KKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEA 225

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
           L  F +M  +GV P+ F L  VL ACG+   +G GR +H   +K      + V+++L+ M
Sbjct: 226 LQVFGDMISEGVDPNEFALSIVLGACGS---IGLGRQLHCSAIKHDLITDIRVSNALLSM 282

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           YG+ G +EE   + + +   ++V+W + I    QNG  E+AI +  +M  EG  P   + 
Sbjct: 283 YGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAF 342

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE 346
           +S+LS+ A++ +LD+G Q H +A+  G + +   G+++IN YSK G +  A + F  M  
Sbjct: 343 SSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHT 402

Query: 347 RDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
            D+ +WN LI  + Q G      A+  +++++K           N I   D    +T L 
Sbjct: 403 HDVTSWNSLIHGHAQHGD-----ANKALEVFSKMRS--------NGIKPDD----STFLG 445

Query: 407 AYADLGRSG--EASRLFYQMQLE--GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
                  SG  E   LF+++ ++    +P    +  +I    RNG+ +EA  M   M   
Sbjct: 446 VLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP-- 503

Query: 463 GVQPNLITWTTLIS 476
             +P+ + W TL++
Sbjct: 504 -FEPDALIWKTLLA 516


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  328 bits (841), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 185/523 (35%), Positives = 276/523 (52%), Gaps = 60/523 (11%)

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           HA AV++G+  D  + SS+++ Y ++G    A  VF RM E+++V W+ LIA Y   G +
Sbjct: 40  HAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDA 99

Query: 366 DVV----------------------------------VASSIVDMYAK------------ 379
           +                                      +++V M+++            
Sbjct: 100 EAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCA 159

Query: 380 ------CERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
                  + +   KQV   ++      D  +   L+  Y   GR+ E  R+F+    E  
Sbjct: 160 LSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFH----ESS 215

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
             ++ S N+++ G  RN Q++EA  +F +    GV+ N+++WT++++   QN    EA+ 
Sbjct: 216 HMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVD 275

Query: 490 FFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
            F+ M   G++P++ TI C L A  +VA+L +GR+ H + +R        + ++LVDMYA
Sbjct: 276 LFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYA 335

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           KCG    A+ +FD  PS+ +  +NAMI GYAMHG A  A+ LF ++Q+    PD +TFT 
Sbjct: 336 KCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTC 395

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669
           +L ACS AGL  EG   F  M   H + P MEH+ C+V LL R G LDEA  +I  MP +
Sbjct: 396 VLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFE 455

Query: 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR 729
           PD+ I GSLL +C       LAE  +E L QLEP N GNYV LSN YA+   W+ V++VR
Sbjct: 456 PDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVR 515

Query: 730 DIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           D MK  GL+K  GCSWI+I  ++H+ +A D SHP    I   L
Sbjct: 516 DEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKL 558



 Score =  168 bits (426), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/476 (27%), Positives = 209/476 (43%), Gaps = 99/476 (20%)

Query: 74  NFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALD 133
           +F   P +    L+ C  +      + +HA  + +G   A + +V + L+  Y +  A  
Sbjct: 15  SFPPDPHLLPSALKSCPAQP---LARALHAAAVVSG--LAEDPFVASSLLHSYIRLGATG 69

Query: 134 VASRLFCRLRVKNVFSWAAII------------------------------------GLN 157
            A  +F R+  KNV  W+A+I                                    GLN
Sbjct: 70  AARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLN 129

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG--FDG 215
            R G +  A+   V M  +G  PD   +   L A G +  V  G+ VHGYV+K G   D 
Sbjct: 130 -RSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDA 188

Query: 216 CVFVASSLIDMYGKCGDLEEARKVF-----------DGMIAR------------------ 246
           CV  A  LIDMYGKCG  +E  +VF           + ++A                   
Sbjct: 189 CVVTA--LIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFI 246

Query: 247 ------NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
                 NVV+W S++   VQNG + EA+ +F  M   GVEP  V++  +L A AN+ AL 
Sbjct: 247 CRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALM 306

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            G+ AH  ++  G   D  +GS++++ Y+K G    A  +F  M  R++V+WN +I  Y 
Sbjct: 307 HGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYA 366

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
             G      A++ V ++   ++              D+V +  +L A +  G + E  R 
Sbjct: 367 MHGD-----AANAVQLFCSMQKCKQKP---------DLVTFTCVLGACSQAGLTEEGRRY 412

Query: 421 FYQMQL-EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           F +MQ   GISP +  +  ++    R+G+++EA D+  +M     +P+   W +L+
Sbjct: 413 FNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMP---FEPDSCIWGSLL 465



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 162/418 (38%), Gaps = 99/418 (23%)

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           PD  +LP+ LK+C A       RA+H   +  G     FVASSL+  Y + G    AR V
Sbjct: 18  PDPHLLPSALKSCPAQP---LARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSV 74

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS-------------- 285
           FD M  +NVV W+++I GY   G  E A  +  +M   GVEP  ++              
Sbjct: 75  FDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRA 134

Query: 286 ---------------------VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
                                V+  LSA  ++  +  GKQ H   V  G  LD  + +++
Sbjct: 135 LDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTAL 194

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
           I+ Y K G  ++   VF      D+ + N L+A   ++ Q                  + 
Sbjct: 195 IDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQ------------------VS 236

Query: 385 NAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
            A  +F   I R    +VV W +++A     GR  EA  LF  MQ  G+ PN ++   V+
Sbjct: 237 EALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVL 296

Query: 441 ---------------------LGFLRN--------------GQMNEAKDMFLQMQSLGVQ 465
                                 GFL +              G+   A+ +F  M S    
Sbjct: 297 PAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSR--- 353

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
            N+++W  +I G   +     A+  F  M +   KP   T TC L AC+       GR
Sbjct: 354 -NVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGR 410



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 152/350 (43%), Gaps = 49/350 (14%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S L++  +  +AV  L  M    F          L      +++  G+Q+H  ++K G 
Sbjct: 125 VSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGC 184

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLF------------------------------- 139
               +  V T L+  Y KC   D   R+F                               
Sbjct: 185 RL--DACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLF 242

Query: 140 ----CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
               CR    NV SW +I+    + G   +A+  F  MQ  GV P++  +P VL A   +
Sbjct: 243 REFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANV 302

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
             +  GR+ H + L+ GF   V+V S+L+DMY KCG    AR +FD M +RNVV+WN+MI
Sbjct: 303 AALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMI 362

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            GY  +G    A+++F  M     +P  V+ T +L A +     +EG++       N M+
Sbjct: 363 GGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRR-----YFNEMQ 417

Query: 316 LDNVLG------SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
             + +       + ++    + G L++A  + + M  E D   W  L+ S
Sbjct: 418 QGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGS 467



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 94/215 (43%), Gaps = 10/215 (4%)

Query: 490 FFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
            +  +      P    +  AL +C    +    RA+H   +   L     + +SL+  Y 
Sbjct: 7   LYHFLRHVSFPPDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYI 63

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           + G    A+ VFD  P K +  ++A+I+GY+  G A  A  L + ++  G++P+ IT+  
Sbjct: 64  RLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNG 123

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV---ILTM 666
           +++  + +G   + +   V M S+    P      C ++ +     +    +V   ++  
Sbjct: 124 LVSGLNRSGRALDAVTALVRMHSE-GFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKA 182

Query: 667 PCDPDAHIIGSLL---STCVKSNETELAEYISEHL 698
            C  DA ++ +L+     C +++E     + S H+
Sbjct: 183 GCRLDACVVTALIDMYGKCGRADEIVRVFHESSHM 217


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  328 bits (841), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 187/567 (32%), Positives = 306/567 (53%), Gaps = 28/567 (4%)

Query: 204 VHGYVLKVGFDGCVFVASSLID-MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
           +H  ++        F AS L+D +  K  ++  A  VF  +   N    N+M+  Y ++ 
Sbjct: 30  IHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESS 89

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             E A+R + EM  +G+     +   +L A   +  L EG      AV  G   D  + +
Sbjct: 90  TPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVN 149

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
            +I+ Y + G    A  VF    E+D+V+WN ++  YV  G+                  
Sbjct: 150 GLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGE------------------ 191

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYAD-LGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           ++NA+ +F+ +  RDVV W+ ++  Y   +G    A   F  M     + +++SWNS+I 
Sbjct: 192 MENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMP----TRDLVSWNSMID 247

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
           G+ + G+M  A+++F +M    +Q N+I+W+ +I G  Q+    EA+  F++ML  GIKP
Sbjct: 248 GYAKVGEMEVAREIFDKM----LQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKP 303

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
              ++  A+SAC+ + +L  GR IH Y+ R+ + L   + T+LVDMY KCG+  +A+R+F
Sbjct: 304 DRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIF 363

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           +  P + +  +N MI G  M+G   EAL  F  ++ + I  D + F  +L ACSHA LV 
Sbjct: 364 NSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVT 423

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           EGL +F  M   ++++P +EH+GC+V+LL R G LD+   +I +MP  P+A + GSLL  
Sbjct: 424 EGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLA 483

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C       LAE + E L +L+ D+ G YV +SN YA  G W  + ++R +MKE+ ++K+ 
Sbjct: 484 CRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDI 543

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEI 768
           G S I++   +  FV+ ++SH   EEI
Sbjct: 544 GRSVIEVDGNVEEFVSGEKSHILREEI 570



 Score =  162 bits (411), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 132/473 (27%), Positives = 219/473 (46%), Gaps = 76/473 (16%)

Query: 100 QIHARILKN---GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           QIHA+++      D FA +  +++ +    +K   ++ A  +F ++   N F    ++  
Sbjct: 29  QIHAQLITTNLISDTFAASRLLDSVV----SKTLNVNYAELVFAQIHQPNSFICNTMVKC 84

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
                  E+AL  + EM+  G+  DN+  P VLKACGA+  +  G  V G  +K GF G 
Sbjct: 85  YTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGD 144

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VFV + LI MY +CG+   AR VFDG   +++V+WNSM+ GYV  G  E A  +F EM  
Sbjct: 145 VFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEM-- 202

Query: 277 EGVEPTRVSVTSILSASANLDALDE--GKQAHAVAVINGMEL-DNVLGSSIINFYSKVGL 333
               P R     ++S S  +D   +  G+   A    + M   D V  +S+I+ Y+KVG 
Sbjct: 203 ----PER----DVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGE 254

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------------------------- 365
           +E A  +F +M+++++++W+++I  Y Q   S                            
Sbjct: 255 MEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSA 314

Query: 366 ------------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
                                   D+VV +++VDMY KC   D A+++FNS+  R+VV W
Sbjct: 315 CSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSW 374

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
           N ++      G   EA   F QM++E I  + + +  V++       + E   +F QM+ 
Sbjct: 375 NVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKG 434

Query: 462 L-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           +  ++P L  +  L+  L +    ++     Q M    +KP+       L AC
Sbjct: 435 VYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSM---PMKPNAALWGSLLLAC 484


>gi|302773325|ref|XP_002970080.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
 gi|300162591|gb|EFJ29204.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
          Length = 829

 Score =  328 bits (841), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 217/735 (29%), Positives = 348/735 (47%), Gaps = 104/735 (14%)

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++ FSW   I    R G   +AL  F  M  +GV+PD      +L A  +LG +  G   
Sbjct: 4   RSPFSWNLAIAEYARNGHHARALEIFRAMALEGVAPDRVSCIAILDAFASLGDLSQGEFF 63

Query: 205 HGYVLKV-GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           H  V +  G    V VA++++ MY +CG +  AR+ FD M+ RNVV+W++MI  Y Q G 
Sbjct: 64  HRTVCEASGLGSDVVVATAVLTMYNRCGSVSHARRAFDAMVVRNVVSWSAMIAAYAQRGH 123

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV-LGS 322
             +A+ +F  M  EGV+   ++  S+L A A++ A+  GK  H   V +G+  D+V LG+
Sbjct: 124 PGDALELFVRMDHEGVKANAITFVSVLDACASMRAIALGKSIHERIVADGLLGDDVILGN 183

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA------------------------- 357
           +I+N Y K G ++ A  VF RM  ++ VTWN +IA                         
Sbjct: 184 TIVNMYGKCGEVDLAREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRP 243

Query: 358 ------------SYVQS---------------GQSDVVVASSIVDMYAKCERIDNAKQVF 390
                       +++QS                +SD  VA+++V++Y KC ++  A+   
Sbjct: 244 NKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESDNTVANALVNLYGKCGKLRAARHAL 303

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS----------PNIISWNSVI 440
             I  RD + W TLLAAYA  G    A  +  +M  EG+            + ++  ++ 
Sbjct: 304 EGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALA 363

Query: 441 LG-------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           LG                         + + G  + A+  F +M  +    ++  W  L+
Sbjct: 364 LGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRMSDV---RDVTVWNALL 420

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH------GYL 529
           +       G E +  F  M   G+ P   T    L AC  +A+L  GR  H      G  
Sbjct: 421 AAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRMLERGLF 480

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF---DISPSKELPVYNAMISGYAMHGLAV 586
            R  +     + TS+++MYAKCG++  AK  F     + + ++  ++AM++ Y+  GL+ 
Sbjct: 481 DRQAVASADLLTTSVINMYAKCGSLADAKAEFAKARRARASDVVAWSAMVAAYSQFGLSE 540

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
           EAL  F ++QQ+G+ PDS++F + +  CSH+GLV E +  F  +  DH + P+  HF C+
Sbjct: 541 EALRCFYSMQQEGVKPDSVSFVSAIAGCSHSGLVREAVAFFTSLRHDHGIAPTEAHFACL 600

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           V+LLSR G + EA  ++   P         +LLS C    + E A  ++  L  L   + 
Sbjct: 601 VDLLSRAGWIREAEALMRRAPLGAHHSTWMTLLSACRTYGDLERARRVAARLASLRSGSA 660

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC-DRSHPKT 765
             Y  L++ +  S +W++V   R  + E+G    PGCSWI+I   ++ F A  DR  P+ 
Sbjct: 661 --YSLLASVFCLSRKWDDVRNARQSLVERGFITQPGCSWIEINNRVYEFFAGDDRLLPRE 718

Query: 766 EEIYATLALLGMHVR 780
           EEI+A L  L + +R
Sbjct: 719 EEIFAELERLCVEIR 733



 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 141/512 (27%), Positives = 236/512 (46%), Gaps = 99/512 (19%)

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  R+  +WN  I  Y +NG +  A+ +F  M LEGV P RVS  +IL A A+L  L +G
Sbjct: 1   MADRSPFSWNLAIAEYARNGHHARALEIFRAMALEGVAPDRVSCIAILDAFASLGDLSQG 60

Query: 303 KQAH-AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
           +  H  V   +G+  D V+ ++++  Y++ G +  A   F  MV R++V+W+ +IA+Y Q
Sbjct: 61  EFFHRTVCEASGLGSDVVVATAVLTMYNRCGSVSHARRAFDAMVVRNVVSWSAMIAAYAQ 120

Query: 362 SGQ-----------------------------------------------------SDVV 368
            G                                                       DV+
Sbjct: 121 RGHPGDALELFVRMDHEGVKANAITFVSVLDACASMRAIALGKSIHERIVADGLLGDDVI 180

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           + ++IV+MY KC  +D A++VF  +  ++ V WNT++AA +   R  EA  L  +M L+G
Sbjct: 181 LGNTIVNMYGKCGEVDLAREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLGEMDLDG 240

Query: 429 ISPNIISWNSVILG-----------------------------------FLRNGQMNEAK 453
           + PN I+  SVI                                     + + G++  A+
Sbjct: 241 LRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESDNTVANALVNLYGKCGKLRAAR 300

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
                +++     + I+WTTL++   ++  G  AI   + M   G+K  + T    L +C
Sbjct: 301 HALEGIET----RDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESC 356

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVY 572
             +A+L  G  IH  L    + L   + T+LVDMY KCGN   A+R FD +S  +++ V+
Sbjct: 357 VAIAALALGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRMSDVRDVTVW 416

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH-----AGLVNEGLELF 627
           NA+++ Y +     E L +F  +  +G+ PD++TF +IL+AC+       G +     L 
Sbjct: 417 NALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRMLE 476

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
            G+F    V  +      V+N+ ++CG+L +A
Sbjct: 477 RGLFDRQAVASADLLTTSVINMYAKCGSLADA 508



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 146/537 (27%), Positives = 237/537 (44%), Gaps = 67/537 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I++ ++     +A++L   M     +     +  +L  C   R +  G+ IH RI
Sbjct: 110 SWSAMIAAYAQRGHPGDALELFVRMDHEGVKANAITFVSVLDACASMRAIALGKSIHERI 169

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           + +G     +  +   +V  Y KC  +D+A  +F R+  KN  +W  +I    R    ++
Sbjct: 170 VADG-LLGDDVILGNTIVNMYGKCGEVDLAREVFERMEAKNAVTWNTMIAACSRHDRYKE 228

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A     EM  DG+ P+   L +V+ AC  +  +  GR VH  V   G +    VA++L++
Sbjct: 229 AFALLGEMDLDGLRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESDNTVANALVN 288

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +YGKCG L  AR   +G+  R+ ++W +++  Y ++G  + AI V   M  EGV+    +
Sbjct: 289 LYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFT 348

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
             ++L +   + AL  G++ H     +G+ELD VL +++++ Y K G  + A   F RM 
Sbjct: 349 FVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRMS 408

Query: 346 E-RDIVTWNLLIASYVQSGQS-----------------DVVVASSIVD------------ 375
           + RD+  WN L+A+YV   Q                  D V   SI+D            
Sbjct: 409 DVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGR 468

Query: 376 -----------------------------MYAKCERIDNAKQVF---NSIILRDVVLWNT 403
                                        MYAKC  + +AK  F         DVV W+ 
Sbjct: 469 LTHSRMLERGLFDRQAVASADLLTTSVINMYAKCGSLADAKAEFAKARRARASDVVAWSA 528

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SL 462
           ++AAY+  G S EA R FY MQ EG+ P+ +S+ S I G   +G + EA   F  ++   
Sbjct: 529 MVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAIAGCSHSGLVREAVAFFTSLRHDH 588

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
           G+ P    +  L+  L++     EA      M    +    +T    LSAC     L
Sbjct: 589 GIAPTEAHFACLVDLLSRAGWIREAEAL---MRRAPLGAHHSTWMTLLSACRTYGDL 642


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  328 bits (840), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 195/618 (31%), Positives = 319/618 (51%), Gaps = 78/618 (12%)

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLD 297
            FD +  R+V AWN MI GY + G + E IR F    L  G+ P   +  S+L A   + 
Sbjct: 41  TFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI 100

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
              +G + H +A+  G   D  + +S+I+ YS+   + +A ++F  M  RD+ +WN +I+
Sbjct: 101 ---DGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMIS 157

Query: 358 SYVQSGQSDVVVASS----------IVDMYAKC-----------------------ERID 384
            Y QSG +   +  S          +V + + C                       E + 
Sbjct: 158 GYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELLR 217

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS--------- 435
           + ++VF+ + +RD++ WN+++ AY    +   A  LF +M+L  I P+ ++         
Sbjct: 218 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 277

Query: 436 -------------------W--------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
                              W        N+V++ + + G ++ A+ +F  + +  V    
Sbjct: 278 QLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDV---- 333

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHG 527
           I+W T+ISG  QN   +EAI  +  M E G I  +  T    L AC+   +LR G  +HG
Sbjct: 334 ISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHG 393

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
            L+++ L L   +VTSL DMY KCG +  A  +F   P      +N +I+ +  HG   +
Sbjct: 394 RLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEK 453

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVV 647
           A+ LFK +  +G+ PD ITF  +L+ACSH+GLV+EG   F  M +D+ + PS++H+GC+V
Sbjct: 454 AVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMV 513

Query: 648 NLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707
           ++  R G L+ AL+ I +M   PDA I G+LLS C      +L +  SEHL ++EP++ G
Sbjct: 514 DMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVG 573

Query: 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEE 767
            +V LSN YA++G+W  V ++R I   KGLRK PG S +++  ++ VF   +++HP  EE
Sbjct: 574 YHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEE 633

Query: 768 IYATLALLGMHVRLVSKV 785
           +Y  L  L   ++++  V
Sbjct: 634 MYRELTALQAKLKMIGYV 651



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 191/396 (48%), Gaps = 37/396 (9%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL  C    D   G  IH+  +K+G        +E++L         L    ++F R+ V
Sbjct: 186 LLSACTEAGDFNRGVTIHSYSIKHG--------LESEL---------LRDCQKVFDRMYV 228

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +++ SW +II          +A+  F EM+   + PD   L ++      LG +   R+V
Sbjct: 229 RDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSV 288

Query: 205 HGYVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
            G+ L+ G F   + + ++++ MY K G ++ AR VF+ +   +V++WN++I GY QNG 
Sbjct: 289 QGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGF 348

Query: 264 NEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             EAI ++  M  EG +   + +  S+L A +   AL +G + H   + NG+ LD  + +
Sbjct: 349 ASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVT 408

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
           S+ + Y K G LEDA  +F ++   + V WN LIA +   G  +  V             
Sbjct: 409 SLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVML----------- 457

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVIL 441
               K++ +  +  D + + TLL+A +  G   E    F  MQ + GI+P++  +  ++ 
Sbjct: 458 ---FKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVD 514

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            + R GQ+  A      ++S+ +QP+   W  L+S 
Sbjct: 515 MYGRAGQLETALKF---IKSMSLQPDASIWGALLSA 547



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 191/405 (47%), Gaps = 41/405 (10%)

Query: 33  LRESDNSYESLYKSYFHQISSLSKEKQIRE----AVDLLTEMKCRNFQIGPEIYGELLQG 88
           LR+    ++ +Y       +S+ K  ++ E    A+ L  EM+    Q  P+    +   
Sbjct: 216 LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQ--PDCLTLISLA 273

Query: 89  CVYKR--DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKN 146
            +  +  D+   + +    L+ G +F  +  +   +VV YAK   +D A  +F  L   +
Sbjct: 274 SILSQLGDIRACRSVQGFTLRKG-WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 332

Query: 147 VFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRAVH 205
           V SW  II    + G + +A+  +  M+E+G ++ +     +VL AC   G +  G  +H
Sbjct: 333 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLH 392

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
           G +LK G    VFV +SL DMYGKCG LE+A  +F  +   N V WN++I  +  +G  E
Sbjct: 393 GRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGE 452

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI- 324
           +A+ +F EM  EGV+P  ++  ++LSA ++   +DEG+    +     M+ D  +  S+ 
Sbjct: 453 KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEM-----MQTDYGITPSLK 507

Query: 325 -----INFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASS------ 372
                ++ Y + G LE A + + S  ++ D   W  L+++    G  D+   +S      
Sbjct: 508 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 567

Query: 373 ----------IVDMYA---KCERIDNAKQVFNSIILRDVVLWNTL 404
                     + +MYA   K E +D  + + +   LR    W+++
Sbjct: 568 EPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSM 612



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 28/252 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  C     +  G ++H R+LKNG +   + +V T L   Y KC  L+ A  LF ++  
Sbjct: 375 VLPACSQAGALRQGMKLHGRLLKNGLYL--DVFVVTSLADMYGKCGRLEDALSLFYQIPR 432

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG--- 201
            N   W  +I  +   G  EKA++ F EM ++GV PD+     +L AC   G V  G   
Sbjct: 433 VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWC 492

Query: 202 ----RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIV 256
               +  +G    +   GC      ++DMYG+ G LE A K    M +  +   W +++ 
Sbjct: 493 FEMMQTDYGITPSLKHYGC------MVDMYGRAGQLETALKFIKSMSLQPDASIWGALLS 546

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS----ASANLDALDE------GKQAH 306
               +G N +  ++  E   E VEP  V    +LS    ++   + +DE      GK   
Sbjct: 547 ACRVHG-NVDLGKIASEHLFE-VEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLR 604

Query: 307 AVAVINGMELDN 318
                + ME+DN
Sbjct: 605 KTPGWSSMEVDN 616


>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  328 bits (840), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 202/606 (33%), Positives = 321/606 (52%), Gaps = 39/606 (6%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ +H  ++ +      F+AS LI  Y K      ARKVFD    RN   WN+M++GY  
Sbjct: 53  GKQLHARLILLSVTPDNFLASKLILFYSKSNHAHFARKVFDTTPHRNTFTWNAMLLGYSF 112

Query: 261 NGLNEEAIRVFYEMTLE---GVEPTRVSVTSILSASANLDALDE-GKQAHAVAVINGMEL 316
           N +   A+ +F   T        P   +++ +L A A+     E  K+ H + +  G+  
Sbjct: 113 NSMFRHALNLFGSFTFSTTPNASPDNFTISCVLKALASSFCSPELAKEVHCLILRRGLYS 172

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD---------- 366
           D  + +++I  Y +   +  A  VF  M ERDIVTWN +I  Y Q    D          
Sbjct: 173 DIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQRRLYDECKRLYLEML 232

Query: 367 --------VVVASSIVDMYAKCERIDNA------KQVFNSIILRDVVLWNTLLAAYADLG 412
                   VV A S+  M A  + +D A      + V  S I  DV L N ++A YA  G
Sbjct: 233 NVSAVAPNVVTAVSV--MQACGQSMDLAFGMELHRFVKESGIEIDVSLSNAVVAMYAKCG 290

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
           R   A  +F  M+      + +++ ++I G++  G +++A  +F  +++    P L  W 
Sbjct: 291 RLDYAREMFEGMR----EKDEVTYGAIISGYMDYGLVDDAMGVFRGVEN----PGLNMWN 342

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
            +ISG+ QN          ++M  +G+ P+  T+   L + +  ++LR G+ +HGY IR 
Sbjct: 343 AVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKEVHGYAIRR 402

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
                  + TS++D Y K G I  A+ VFD+S S+ L ++ ++IS YA HG A  AL L+
Sbjct: 403 GYEQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLY 462

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
             +  KGI PD +T T++L AC+H+GLV+E   +F  M S + ++P +EH+ C+V +LSR
Sbjct: 463 AQMLDKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNSMPSKYGIQPLVEHYACMVGVLSR 522

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G L EA++ I  MP +P A + G LL       + E+ ++  +HL ++EP+N GNY+ +
Sbjct: 523 AGKLSEAVQFISEMPIEPSAKVWGPLLHGASVFGDVEIGKFACDHLFEIEPENTGNYIIM 582

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           +N YA +G+W +  +VR+ MK  GL+K  G SWI+    L  F+A D S+ +++EIYA L
Sbjct: 583 ANLYAHAGKWEQAGEVRERMKVIGLQKIRGSSWIETSGGLLSFIAKDVSNGRSDEIYALL 642

Query: 773 -ALLGM 777
             LLG+
Sbjct: 643 EGLLGL 648



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 197/412 (47%), Gaps = 52/412 (12%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +++H  IL+ G +   + +V   L+  Y +CD + +A  +F  +  +++ +W A+IG   
Sbjct: 159 KEVHCLILRRGLY--SDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYS 216

Query: 159 RVGLSEKALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
           +  L ++    ++EM     V+P+     +V++ACG    + FG  +H +V + G +  V
Sbjct: 217 QRRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEIDV 276

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF------ 271
            ++++++ MY KCG L+ AR++F+GM  ++ V + ++I GY+  GL ++A+ VF      
Sbjct: 277 SLSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRGVENP 336

Query: 272 -------------------------YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
                                     +M   G+ P  V++ SIL + +    L  GK+ H
Sbjct: 337 GLNMWNAVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKEVH 396

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
             A+  G E +  + +SII+ Y K+G +  A  VF     R ++ W  +I++Y   G + 
Sbjct: 397 GYAIRRGYEQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWTSIISAYAAHGDAG 456

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
           + +      +YA         Q+ +  I  D V   ++L A A  G   EA  +F  M  
Sbjct: 457 LALG-----LYA---------QMLDKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNSMPS 502

Query: 427 E-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
           + GI P +  +  ++    R G+++EA     +M    ++P+   W  L+ G
Sbjct: 503 KYGIQPLVEHYACMVGVLSRAGKLSEAVQFISEMP---IEPSAKVWGPLLHG 551



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 135/284 (47%), Gaps = 38/284 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           ++Q C    D+  G ++H  + ++G     +  +   +V  YAKC  LD A  +F  +R 
Sbjct: 247 VMQACGQSMDLAFGMELHRFVKESG--IEIDVSLSNAVVAMYAKCGRLDYAREMFEGMRE 304

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFV-------------------------------EM 173
           K+  ++ AII      GL + A+  F                                +M
Sbjct: 305 KDEVTYGAIISGYMDYGLVDDAMGVFRGVENPGLNMWNAVISGMVQNKQFEGVFDLVRQM 364

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           Q  G+SP+   L ++L +      +  G+ VHGY ++ G++  V+V++S+ID YGK G +
Sbjct: 365 QGSGLSPNAVTLASILPSFSYFSNLRGGKEVHGYAIRRGYEQNVYVSTSIIDAYGKLGCI 424

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
             AR VFD   +R+++ W S+I  Y  +G    A+ ++ +M  +G+ P  V++TS+L+A 
Sbjct: 425 CGARWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLYAQMLDKGIRPDPVTLTSVLTAC 484

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           A+   +DE     A  + N M     +   + ++   VG+L  A
Sbjct: 485 AHSGLVDE-----AWNIFNSMPSKYGIQPLVEHYACMVGVLSRA 523



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 141/312 (45%), Gaps = 31/312 (9%)

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           L +GKQ HA  ++  +  DN L S +I FYSK      A  VF     R+  TWN ++  
Sbjct: 50  LRQGKQLHARLILLSVTPDNFLASKLILFYSKSNHAHFARKVFDTTPHRNTFTWNAMLLG 109

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-------DVVLWNTLLAAYADL 411
           Y            S   M+       +A  +F S           D    + +L A A  
Sbjct: 110 Y------------SFNSMF------RHALNLFGSFTFSTTPNASPDNFTISCVLKALASS 151

Query: 412 GRSGEASRLFYQMQL-EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
             S E ++  + + L  G+  +I   N++I  + R  ++  A+ +F  M     + +++T
Sbjct: 152 FCSPELAKEVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMS----ERDIVT 207

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLE-TGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           W  +I G +Q    +E    + EML  + + P+  T    + AC     L  G  +H ++
Sbjct: 208 WNAMIGGYSQRRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFV 267

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
               + +   +  ++V MYAKCG +  A+ +F+    K+   Y A+ISGY  +GL  +A+
Sbjct: 268 KESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDAM 327

Query: 590 ALFKNLQQKGID 601
            +F+ ++  G++
Sbjct: 328 GVFRGVENPGLN 339



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 116/273 (42%), Gaps = 53/273 (19%)

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
           AL  C+D   LR G+ +H  LI   +     + + L+  Y+K  + H A++VFD +P + 
Sbjct: 40  ALQHCSDHRLLRQGKQLHARLILLSVTPDNFLASKLILFYSKSNHAHFARKVFDTTPHRN 99

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNL---QQKGIDPDSITFTNILNA-----CS----- 615
              +NAM+ GY+ + +   AL LF +          PD+ T + +L A     CS     
Sbjct: 100 TFTWNAMLLGYSFNSMFRHALNLFGSFTFSTTPNASPDNFTISCVLKALASSFCSPELAK 159

Query: 616 --HAGLVNEGL--ELFV-----------------GMFSDHQVKPSMEHFGCVVNLLSRCG 654
             H  ++  GL  ++FV                     D   +  +  +  ++   S+  
Sbjct: 160 EVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQRR 219

Query: 655 NLDEALRVILTM----PCDPDAHIIGSLLSTCVKSNE----TELAEYISEHLLQLEPDNP 706
             DE  R+ L M       P+     S++  C +S +     EL  ++ E  ++++    
Sbjct: 220 LYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEID---- 275

Query: 707 GNYVALSNA----YAASGRWNEVSQVRDIMKEK 735
              V+LSNA    YA  GR +   ++ + M+EK
Sbjct: 276 ---VSLSNAVVAMYAKCGRLDYAREMFEGMREK 305



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 4/209 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS + + KQ     DL+ +M+             +L    Y  ++  G+++H   ++ G 
Sbjct: 345 ISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKEVHGYAIRRG- 403

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            + +N YV T ++  Y K   +  A  +F   + +++  W +II      G +  AL  +
Sbjct: 404 -YEQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLY 462

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV-LKVGFDGCVFVASSLIDMYGK 229
            +M + G+ PD   L +VL AC   G V     +   +  K G    V   + ++ +  +
Sbjct: 463 AQMLDKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNSMPSKYGIQPLVEHYACMVGVLSR 522

Query: 230 CGDLEEARKVFDGM-IARNVVAWNSMIVG 257
            G L EA +    M I  +   W  ++ G
Sbjct: 523 AGKLSEAVQFISEMPIEPSAKVWGPLLHG 551


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  328 bits (840), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 185/555 (33%), Positives = 296/555 (53%), Gaps = 56/555 (10%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L+  Y  CG+    R +FD +  +NVV +N MI  YV NGL ++A+ VF  M  +G  P 
Sbjct: 77  LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPD 136

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
             +   +L A +    L  G Q H   V  G+++         N Y              
Sbjct: 137 NYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDM---------NLY-------------- 173

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                     + + +V MY KC+ +D A++V + +  RD+V WN
Sbjct: 174 --------------------------IGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWN 207

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN--EAKDMFLQMQ 460
           +++A YA  GR  +A +L  +M+   + P+  +  S++         N    KDMF++++
Sbjct: 208 SMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLK 267

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
               + +LI+W  +I+    N+  NEA+  + +M   G++P   +I+  L AC D+++  
Sbjct: 268 ----EKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAV 323

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            GR IH Y+ R  L     +  +L+DMYAKCG + +A+ VFD    +++  + +MIS Y 
Sbjct: 324 LGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYG 383

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
           M G   +A+ALFK ++  G  PD I F ++L ACSHAGLV+EG   F  + +++ + P +
Sbjct: 384 MSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCF-NLMAEYGITPGI 442

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EH+ C+V+LL R G +DEA  +   MP +P+  + GSLLS C   +   +A   ++HL Q
Sbjct: 443 EHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQ 502

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           L P+  G YV LSN YA +GRW +V  VR IM  KG++K PG S ++I + ++ F+A D+
Sbjct: 503 LAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQ 562

Query: 761 SHPKTEEIYATLALL 775
           SH +++EIY  L +L
Sbjct: 563 SHTQSKEIYKALGVL 577



 Score =  186 bits (472), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 231/445 (51%), Gaps = 23/445 (5%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D  T +++H++IL + +    N  +  KL+  YA C        +F  +  KNV  +  +
Sbjct: 50  DAKTLKKLHSKILIDQNLHP-NPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVM 108

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I      GL + AL+ F  M   G  PDN+  P VLKAC   G +  G  +HG V+K+G 
Sbjct: 109 IRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGL 168

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           D  +++ + L+ MYGKC  L+ AR+V D M  R++V+WNSM+ GY QNG   +A+++  E
Sbjct: 169 DMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCRE 228

Query: 274 MTLEGVEPTRVSVTSILSASANL---------DALDEGKQAHAVA--VINGMELDNVLGS 322
           M    ++P   ++ S+L A  N          D   + K+   ++  V+  + ++N + +
Sbjct: 229 MEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPN 288

Query: 323 SIINFYSKV---GLLEDAEVVFSRMVERDIVTWNLL---IASYVQSGQ--SDVVVASSIV 374
             ++ Y ++   G+  DA  + S +     ++  +L   I  YV+  +   ++++ ++++
Sbjct: 289 EAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALI 348

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
           DMYAKC  +  A+ VF+ ++ RDVV W ++++AY   G+  +A  LF +M+  G +P+ I
Sbjct: 349 DMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWI 408

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           ++ SV+      G ++E +  F  M   G+ P +  +  ++  L +    +EA    ++M
Sbjct: 409 AFVSVLAACSHAGLVDEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQM 468

Query: 495 LETGIKPSTTTITCALSACTDVASL 519
               ++P+       LSAC   +S+
Sbjct: 469 ---PMEPNERVWGSLLSACRVYSSM 490



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 133/245 (54%), Gaps = 2/245 (0%)

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188
           CD +     +F +L+ K++ SW  +I +     +  +A+  +++MQ  GV PD   + +V
Sbjct: 253 CDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSV 312

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           L ACG L     GR +H YV +      + + ++LIDMY KCG L+EAR VFD M+ R+V
Sbjct: 313 LPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDV 372

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
           V+W SMI  Y  +G  ++A+ +F +M   G  P  ++  S+L+A ++   +DEG+    +
Sbjct: 373 VSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNL 432

Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTW-NLLIASYVQSGQSD 366
               G+       + +++   + G +++A  +  +M +E +   W +LL A  V S  + 
Sbjct: 433 MAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNI 492

Query: 367 VVVAS 371
            ++A+
Sbjct: 493 ALLAA 497



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 537 PTP-IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           P P +   L+  YA CG     + +FD    K +  +N MI  Y  +GL  +AL +FK +
Sbjct: 69  PNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTM 128

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
             +G  PD+ T+  +L ACS +G +  GL++  G      +  ++     +V++  +C  
Sbjct: 129 ANQGFYPDNYTYPCVLKACSVSGNLWVGLQIH-GAVVKLGLDMNLYIGNGLVSMYGKCKW 187

Query: 656 LDEALRVILTMP 667
           LD A RV+  MP
Sbjct: 188 LDAARRVLDEMP 199


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  328 bits (840), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 204/667 (30%), Positives = 334/667 (50%), Gaps = 85/667 (12%)

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA 250
           AC +   +  GR +H ++L         + + ++ MYGKCG L +AR+VFD M  RN+V+
Sbjct: 73  ACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVS 132

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           + S+I GY QNG   EAI ++ +M    + P + +  SI+ A A    +  GKQ HA  +
Sbjct: 133 YTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVI 192

Query: 311 --------------------INGME-----------LDNVLGSSIINFYSKVGLLEDAEV 339
                                N M             D +  SSII  +S++G   +A  
Sbjct: 193 KLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALS 252

Query: 340 VFSRMVERDIVTWN-LLIASYVQSGQS---------------------DVVVASSIVDMY 377
               M+   +   N  +  S +++  S                     + +   S+ DMY
Sbjct: 253 HLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMY 312

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           A+C  +D+A++VFN I   D   WN ++A  A+ G + EA  +F +M+  G  P+ IS  
Sbjct: 313 ARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLR 372

Query: 438 SVIL---------------------GFLRNGQM-NEAKDMFLQMQSLGVQPNL------- 468
           S++                      GFL +  + N    M+     L    NL       
Sbjct: 373 SLLCAQTKPMALCQGMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNK 432

Query: 469 ---ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
              ++W  +++   Q+    E +  F+ ML +  +P   T+   L  C +++SL+ G  +
Sbjct: 433 ADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQV 492

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           H Y  +  L L   I   L+DMYAKCG++ QA+R+FD   + ++  ++ +I GYA  G  
Sbjct: 493 HCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFG 552

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            EAL LF+ ++  GI+P+ +TF  +L ACSH GLV EGL+L+  M ++H + P+ EH  C
Sbjct: 553 EEALILFREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHGISPTKEHCSC 612

Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
           VV+LL+R G+L+EA R I  M  +PD  +  +LLS C      +LA+  +E++L+++P N
Sbjct: 613 VVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVDLAQKAAENILKIDPFN 672

Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
              +V L + +A+SG W + + +R  MK+  ++K PG SWI + +++H+F A D  HP+ 
Sbjct: 673 STAHVLLCSMHASSGNWEDAALLRSSMKKHDVKKIPGQSWIDVEDKIHIFFAEDVLHPER 732

Query: 766 EEIYATL 772
           ++IY  L
Sbjct: 733 DDIYTVL 739


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 201/636 (31%), Positives = 328/636 (51%), Gaps = 71/636 (11%)

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC----VFVASSLIDMYGKCGDLEE 235
           P+ F+  N++ A   +    + R V        FDG     +F  ++L+  Y K G L E
Sbjct: 36  PETFLHNNIVHAYALIRSSIYARRV--------FDGIPQPNLFSWNNLLLAYSKSGHLSE 87

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASA 294
             + F+ +  R+ V WN +I GY  +GL   A++ +  M  +     TRV++ ++L  S+
Sbjct: 88  MERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSS 147

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
           +   +  GKQ H   +  G E   ++GS +++ YSKVG + DA+ VF  + +R+ V +N 
Sbjct: 148 SNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNT 207

Query: 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
           L+   +                   C  I++A Q+F  +  +D V W+ ++   A  G  
Sbjct: 208 LMGGLLA------------------CGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGME 248

Query: 415 GEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQ--------------------- 448
            EA   F +M++EG+  +   + SV+     LG + +G+                     
Sbjct: 249 KEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSAL 308

Query: 449 ---------MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
                    ++ AK +F +M+    Q N+++WT ++ G  Q     EA+  F +M  +GI
Sbjct: 309 IDMYCKCKCLHYAKTVFDRMK----QKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGI 364

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
            P   T+  A+SAC +++SL  G   HG  I   L     +  SLV +Y KCG+I  + R
Sbjct: 365 DPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTR 424

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           +F+    ++   + AM+S YA  G AVEA+ LF  + Q G+ PD +T T +++ACS AGL
Sbjct: 425 LFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGL 484

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           V +G   F  M +++ + PS  H+ C+++L SR G ++EA+  I  MP  PDA    +LL
Sbjct: 485 VEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLL 544

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           S C      E+ ++ +E L++L+P +P  Y  LS+ YA+ G+W+ V+Q+R  MKEK +RK
Sbjct: 545 SACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRK 604

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            PG SWI+   +LH F A D S P +++IYA L  L
Sbjct: 605 EPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEEL 640



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 147/566 (25%), Positives = 250/566 (44%), Gaps = 97/566 (17%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFAR---------NEYVETKLVVFYAKCDA 131
           I+G +++   +         +HA  L     +AR         N +    L++ Y+K   
Sbjct: 25  IHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGH 84

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP-DNFVLPNVLK 190
           L    R F +L  ++  +W  +I      GL   A+  +  M +D  S      L  +LK
Sbjct: 85  LSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLK 144

Query: 191 ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV-- 248
              + G V  G+ +HG V+K+GF+  + V S L+DMY K G + +A+KVF G+  RN   
Sbjct: 145 LSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVM 204

Query: 249 ----------------------------VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
                                       V+W++MI G  QNG+ +EAI  F EM +EG++
Sbjct: 205 YNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLK 264

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
             +    S+L A   L A+++G+Q HA  +   ++    +GS++I+ Y K   L  A+ V
Sbjct: 265 MDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTV 324

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSD---------------------------------- 366
           F RM ++++V+W  ++  Y Q+G++                                   
Sbjct: 325 FDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSL 384

Query: 367 ------------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                             + V++S+V +Y KC  ID++ ++FN + +RD V W  +++AY
Sbjct: 385 EEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAY 444

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPN 467
           A  GR+ EA +LF +M   G+ P+ ++   VI    R G + + +  F L +   G+ P+
Sbjct: 445 AQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPS 504

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
              ++ +I   +++    EA+ F   M     +P     T  LSAC +  +L  G+    
Sbjct: 505 NGHYSCMIDLFSRSGRIEEAMGFINGM---PFRPDAIGWTTLLSACRNKGNLEIGKWAAE 561

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGN 553
            LI  D   P    T L  +YA  G 
Sbjct: 562 SLIELDPHHPAG-YTLLSSIYASKGK 586



 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 181/336 (53%), Gaps = 8/336 (2%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I  L++    +EA++   EMK    ++    +G +L  C     +  G+QIHA I
Sbjct: 234 SWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACI 293

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++       + YV + L+  Y KC  L  A  +F R++ KNV SW A++    + G + +
Sbjct: 294 IRTN--LQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGE 351

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  F++MQ  G+ PD++ L   + AC  +  +  G   HG  +  G    + V++SL+ 
Sbjct: 352 AVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVT 411

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +YGKCGD++++ ++F+ M  R+ V+W +M+  Y Q G   EAI++F +M   G++P  V+
Sbjct: 412 LYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVT 471

Query: 286 VTSILSASANLDALDEGKQAHAVAVIN--GMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           +T ++SA +    +++G Q +   +IN  G+   N   S +I+ +S+ G +E+A    + 
Sbjct: 472 LTGVISACSRAGLVEKG-QRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFING 530

Query: 344 MVER-DIVTWNLLIASYVQSGQSDV--VVASSIVDM 376
           M  R D + W  L+++    G  ++    A S++++
Sbjct: 531 MPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIEL 566


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/505 (35%), Positives = 282/505 (55%), Gaps = 63/505 (12%)

Query: 322 SSIINFYSKVGLLEDAEVVFSRM----VERDIVTWNLLIA-----SYVQSG--------- 363
           ++II  YS+    +DA +++S+M    V  D  T+  L+      S++Q G         
Sbjct: 88  NAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFR 147

Query: 364 ---QSDVVVASSIVDMYAKCERIDNAKQVFNSIIL--RDVVLWNTLLAAYADLGRSGEAS 418
              ++DV V + ++ +YAKC R+  A+ VF  + L  R +V W  +++AYA  G   EA 
Sbjct: 148 LGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEAL 207

Query: 419 RLFYQMQLEGISPNIISWNSVILGFL---------------------------------- 444
            +F QM+   + P+ ++  SV+  F                                   
Sbjct: 208 EIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMY 267

Query: 445 -RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            + GQ+  AK +F +M+S    PNLI W  +ISG  +N    +AI  F EM+   ++P T
Sbjct: 268 AKCGQVATAKILFDKMKS----PNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDT 323

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
            +IT A+SAC  V SL   R +  Y+ R D      I ++L+DM+AKCG++  A+ VFD 
Sbjct: 324 ISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDR 383

Query: 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623
           +  +++ V++AMI GY +HG A EA++L++ +++ G+ P+ +TF  +L AC+H+G+V EG
Sbjct: 384 TLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREG 443

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
              F  M +DH++ P  +H+ C+++LL R G+LD+A  VI  MP  P   + G+LLS C 
Sbjct: 444 WWFFNRM-ADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACK 502

Query: 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGC 743
           K    EL +Y ++ L  ++P N G+YV LSN YAA+  W+ V++VR  MKEKGL K+ GC
Sbjct: 503 KHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGC 562

Query: 744 SWIQIGEELHVFVACDRSHPKTEEI 768
           SW+++   L  F   D+SHP+ EEI
Sbjct: 563 SWVEVRGRLEGFRVGDKSHPRYEEI 587



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 147/536 (27%), Positives = 255/536 (47%), Gaps = 70/536 (13%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
            Y  L+    +K  +   +QIHAR+L  G  F+   ++ TKL+   +    +  A ++F 
Sbjct: 23  FYASLIDSSTHKAQL---RQIHARLLVLGLQFS--GFLITKLIHASSSYGDITFARQVFD 77

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
            L    VF W AII    R    + AL+ + +MQ   VSPD+F  P++LKACG L  +  
Sbjct: 78  DLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQM 137

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG--MIARNVVAWNSMIVGY 258
           GR VH  V ++GF+  VFV + LI +Y KC  L  AR VF+G  +  R +V+W +++  Y
Sbjct: 138 GRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAY 197

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            QNG   EA+ +F +M    V+P  V++ S+L+A   L  L++G+  HA  +  G+E + 
Sbjct: 198 AQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEP 257

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
            L  S+   Y+K G +  A+++F +M   +++ WN +I+ Y ++G               
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINK 317

Query: 364 -------------------------------------QSDVVVASSIVDMYAKCERIDNA 386
                                                + DV ++S+++DM+AKC  ++ A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECA 377

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
           + VF+  + RDVV+W+ ++  Y   G++ EA  L+  M+ +G+ PN +++  +++    +
Sbjct: 378 RSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHS 437

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G + E    F +M    + P    +  +I  L +    ++A    + M    ++P  T  
Sbjct: 438 GMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCM---PVQPGVTVW 494

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
              LSAC     +  G+     L   D         S    Y +  N++ A R++D
Sbjct: 495 GALLSACKKHRHVELGKYAAQQLFSID--------PSNTGHYVQLSNLYAAARLWD 542



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 225/471 (47%), Gaps = 23/471 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I   S+    ++A+ + ++M+          +  LL+ C     +  G+ +HA++ + G 
Sbjct: 91  IRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLG- 149

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRV--KNVFSWAAIIGLNCRVGLSEKALI 168
            F  + +V+  L+  YAKC  L  A  +F  L +  + + SW AI+    + G   +AL 
Sbjct: 150 -FEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALE 208

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F +M++  V PD   L +VL A   L  +  GR++H  V+K+G +    +  SL  MY 
Sbjct: 209 IFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYA 268

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG +  A+ +FD M + N++ WN+MI GY +NG  ++AI +F+EM  + V P  +S+TS
Sbjct: 269 KCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITS 328

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
            +SA A + +L++ +        +    D  + S++I+ ++K G +E A  VF R ++RD
Sbjct: 329 AISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRD 388

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           +V W+ +I  Y   GQ     A   + +Y   ER        + +   DV     L+A  
Sbjct: 389 VVVWSAMIVGYGLHGQ-----AREAISLYRAMER--------DGVHPNDVTFLGLLIACN 435

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
              G   E    F +M    I+P    +  +I    R G +++A ++   ++ + VQP +
Sbjct: 436 HS-GMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEV---IKCMPVQPGV 491

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
             W  L+S   ++          Q++    I PS T     LS     A L
Sbjct: 492 TVWGALLSACKKHRHVELGKYAAQQLF--SIDPSNTGHYVQLSNLYAAARL 540


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 230/806 (28%), Positives = 379/806 (47%), Gaps = 120/806 (14%)

Query: 79  PEIYGELLQGC--VYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD-ALDV- 134
           P  +G +L+ C       +    Q+H  + K    +A N  V   L+  Y  C   L + 
Sbjct: 160 PFTFGSVLRACQDAGPDLLAFAVQVHGLVSKT--IYASNTTVCNALISMYGNCSVGLPLQ 217

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG----VSPD-----NFVL 185
           A ++F    V+++ +W A++ +  + G        F+ M  D     + P+     + + 
Sbjct: 218 AQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLIT 277

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
              L +C +    G    V   VLK G    ++V S+L+  + + G L+EA+ +F  +  
Sbjct: 278 ATSLSSCSS----GVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKE 333

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL----DALDE 301
           RN V  N +IVG V+   +EEA+ +F       V  T   V  +LSA A      D L  
Sbjct: 334 RNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVV-LLSAVAEFSIPEDGLMR 392

Query: 302 GKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           G++ H   +  G+ +L   L + ++N Y+K G ++ A  VF  +  RD V+WN +I+   
Sbjct: 393 GREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLD 452

Query: 361 Q----------------------------------------SGQS------------DVV 368
           Q                                        +GQ             D  
Sbjct: 453 QNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTS 512

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY-ADLGRSGEASRLFYQMQLE 427
           V++++V MY  C     + ++FNS+   D+V WN+++    +    + E+  +F  M   
Sbjct: 513 VSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRS 572

Query: 428 GISPNIISW-----------------------------------NSVILGFLRNGQMNEA 452
           G++PN +++                                   N+++  + ++G M+  
Sbjct: 573 GLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSC 632

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           + +F    S+  + + ++W ++ISG   N    E +     M+ +       T +  L+A
Sbjct: 633 EQLF---SSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNA 689

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C  VA+L  G  +H + IR  L     + ++L+DMY+KCG I  A +VF+    K    +
Sbjct: 690 CASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSW 749

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
           N+MISGYA HGL  +AL +F+ +Q+ G  PD +TF ++L+ACSHAGLV+ GL+ F  M  
Sbjct: 750 NSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYF-EMME 808

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE---TE 689
           DH + P +EH+ CV++LL R G L +    I  MP  P+  I  ++L  C +S +    +
Sbjct: 809 DHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRID 868

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           L +  S  LL+LEP NP NYV  SN YAA+GRW + ++ R  M    ++K  G SW+ +G
Sbjct: 869 LGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLG 928

Query: 750 EELHVFVACDRSHPKTEEIYATLALL 775
           + +H F+A DRSHP T+EIY  L  L
Sbjct: 929 DGVHTFIAGDRSHPNTKEIYEKLNFL 954



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 158/678 (23%), Positives = 306/678 (45%), Gaps = 122/678 (17%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +++H  ++K G     + ++   LV  YAK   L  A ++F  +  +N  SW  ++    
Sbjct: 76  ERLHLELVKRG--LTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYV 133

Query: 159 RVGLSEKALIGFVEMQEDGVS---PDNFVLPNVLKACGALG--WVGFGRAVHGYVLKVGF 213
             G++++A   F  M  +G     P  F   +VL+AC   G   + F   VHG V K  +
Sbjct: 134 LSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIY 193

Query: 214 DGCVFVASSLIDMYGKC--GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
                V ++LI MYG C  G   +A++VFD    R+++ WN+++  Y + G       +F
Sbjct: 194 ASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLF 253

Query: 272 YEMTLEG----VEPTRVSVTSILSASANLDALDEG--KQAHAVAVINGMELDNVLGSSII 325
             M  +     + P   +  S+++A++ L +   G   Q  A  + +G   D  +GS+++
Sbjct: 254 MAMLHDDSAIELRPNEHTFGSLITATS-LSSCSSGVLDQVFARVLKSGSSSDLYVGSALV 312

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA--------------------SYVQSGQS 365
           + +++ G+L++A+ +F  + ER+ VT N LI                     S+V +  +
Sbjct: 313 SAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDT 372

Query: 366 DVVVASSI------------------------------------VDMYAKCERIDNAKQV 389
            VV+ S++                                    V+MYAKC  ID A +V
Sbjct: 373 FVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRV 432

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSG--EASRLFYQMQLEG-ISP--------------- 431
           F  +  RD V WNT+++    L ++G  E + + Y M  +G ISP               
Sbjct: 433 FRLLCARDRVSWNTIISV---LDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASL 489

Query: 432 -----------NIISW---------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
                      + + W         N+++  +   G  +E+ ++F  M     + ++++W
Sbjct: 490 RLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSM----AEHDIVSW 545

Query: 472 TTLISGL-TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
            +++  + + ++   E++  F  M+ +G+ P+  T    LSA + ++ L  G+ +H  ++
Sbjct: 546 NSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVL 605

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGLAVEAL 589
           +H       +  +L+  YAK G++   +++F  +S  ++   +N+MISGY  +G   E +
Sbjct: 606 KHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETM 665

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV-GMFSDHQVKPSMEHFGCVVN 648
                +       D  TF+ +LNAC+    +  G+E+   G+ S  +    +E    +++
Sbjct: 666 DCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVE--SALLD 723

Query: 649 LLSRCGNLDEALRVILTM 666
           + S+CG +D A +V  +M
Sbjct: 724 MYSKCGRIDYASKVFNSM 741



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 148/317 (46%), Gaps = 4/317 (1%)

Query: 54  LSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFA 113
           +S      E+V++ + M           +  LL        +  G+Q+HA +LK+G    
Sbjct: 553 VSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAI-- 610

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLR-VKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
            +  V+  L+  YAK   +D   +LF  +   ++  SW ++I      G  ++ +     
Sbjct: 611 EDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWL 670

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M       D      VL AC ++  +  G  +H + ++   +  V V S+L+DMY KCG 
Sbjct: 671 MMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGR 730

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           ++ A KVF+ M  +N  +WNSMI GY ++GL E+A+ +F EM   G  P  V+  S+LSA
Sbjct: 731 IDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSA 790

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVT 351
            ++   +D G     +   +G+       S +I+   + G L   +   +RM ++ + + 
Sbjct: 791 CSHAGLVDRGLDYFEMMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLI 850

Query: 352 WNLLIASYVQSGQSDVV 368
           W  ++ +  QS   D +
Sbjct: 851 WRTVLVACRQSKDGDRI 867


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 196/661 (29%), Positives = 323/661 (48%), Gaps = 94/661 (14%)

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H   +K+G    V+  +++++ Y KC +L  A  +FD M  R+ V+WN+MI G++  G  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           E +  V   M   G E  R +  S+L   A       G+Q H++ +  G   +   GS++
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV----------------- 367
           ++ Y+K   LEDA + F  + + + V+WN +I  Y Q+G  +                  
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 368 -----------------------------------VVASSIVDMYAKCERIDNAKQVFNS 392
                                               + ++++  Y+KC  +D+AK++F+S
Sbjct: 201 GTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDS 260

Query: 393 II-LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------- 440
              +RD+V WN+LLAAY    +   A +L   MQ  G  P++ S+ S+I           
Sbjct: 261 SAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNN 320

Query: 441 ----------LGFLRN----------------GQMNEAKDMFLQMQSLGVQPNLITWTTL 474
                      GF ++                G M EA  +F  ++      + ++W ++
Sbjct: 321 GRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEF----KDRVSWNSI 376

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           ++GL+Q     +A+  F  M    +     + +  L +C+D+A+ + G+ IH   +++ L
Sbjct: 377 LTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGL 436

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
                + +SL+ MY+KCG I  A+R F+ +       +NA++ GYA HG    AL LF  
Sbjct: 437 ESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFL 496

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           +++K +  D ITF  +L ACSH GLV +G +    M SD+ V P MEH+ C V+L  R G
Sbjct: 497 MEEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSG 556

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L+EA  +I  MP  PD  +  + L  C      ELA  ++ HLL++EP+    YV LSN
Sbjct: 557 RLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSN 616

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            Y    RW+E ++V+ +MKE+G++K PG SWI++   +H F+A D SHP  ++IY  L +
Sbjct: 617 MYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLLEV 676

Query: 775 L 775
           L
Sbjct: 677 L 677



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 134/508 (26%), Positives = 238/508 (46%), Gaps = 26/508 (5%)

Query: 65  DLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVV 124
           D+L  M+   F++    +G +L+G  +    + GQQ+H+ I+K G  +A N Y  + L+ 
Sbjct: 85  DVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMG--YAENVYAGSALLD 142

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
            YAKC+ L+ A   F  +   N  SW A+I    + G  E A      M+++G   D+  
Sbjct: 143 MYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGT 202

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
              +L       +      +HG ++K G +    + ++LI  Y KCG L++A+++FD   
Sbjct: 203 YAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSA 262

Query: 245 A-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
             R++V WNS++  Y+     + A ++  +M   G EP   S TSI+SA  N +  + G+
Sbjct: 263 GIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGR 322

Query: 304 QAHAVAVINGMELDNVLGSSIINFY--SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
             H + +  G E    + +++I+ Y  S  G +++A  +F  +  +D V+WN ++    Q
Sbjct: 323 SLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQ 382

Query: 362 SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
           +G S+  V  S + M +    ID+      S +LR      + LA +  LG+      L 
Sbjct: 383 TGSSEDAV-KSFLHMRSAAMDIDHYS---FSAVLRSC----SDLATF-QLGQQIHVLALK 433

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
           Y     G+  N    +S+I  + + G + +A+  F +      + + ITW  L+ G  Q+
Sbjct: 434 Y-----GLESNEFVSSSLIFMYSKCGIIEDARRSFEE----ASKNSSITWNALMFGYAQH 484

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI- 540
              N A+  F  M E  +K    T    L+AC+ +  +  G       +  D  +P  + 
Sbjct: 485 GQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQGCKFL-RCMESDYGVPPRME 543

Query: 541 -VTSLVDMYAKCGNIHQAKRVFDISPSK 567
                VD+Y + G + +AK + +  P K
Sbjct: 544 HYACAVDLYGRSGRLEEAKALIEEMPFK 571



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 16/213 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ++ LS+     +AV     M+     I    +  +L+ C        GQQIH   LK G 
Sbjct: 377 LTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYG- 435

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               NE+V + L+  Y+KC  ++ A R F      +  +W A++    + G    AL  F
Sbjct: 436 -LESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLF 494

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFG-------RAVHGYVLKVGFDGCVFVASSL 223
             M+E  V  D+     VL AC  +G V  G        + +G   ++    C       
Sbjct: 495 FLMEEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACA------ 548

Query: 224 IDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI 255
           +D+YG+ G LEEA+ + + M  + +   W + +
Sbjct: 549 VDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFL 581



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 42/226 (18%)

Query: 523 RAIHGYLIRHDLCLPTPIVT------SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           RA+   L+ H L +    +       ++++ Y KC  +  A  +FD  P ++   +N MI
Sbjct: 12  RALANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMI 71

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +G+   G    +  + + ++  G + D  TF ++L   +           F GMF     
Sbjct: 72  AGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIA-----------FAGMF----- 115

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
                H G  V+             +I+ M    + +   +LL    K  + E A Y+S 
Sbjct: 116 -----HLGQQVH------------SIIIKMGYAENVYAGSALLDMYAKCEKLEDA-YLS- 156

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
             L +   N  ++ A+ N YA +G       + D M+++G + + G
Sbjct: 157 -FLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDG 201


>gi|449473751|ref|XP_004153972.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Cucumis sativus]
          Length = 591

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 202/628 (32%), Positives = 328/628 (52%), Gaps = 66/628 (10%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRA--VHGYVLKVGFDGCVFVASSLIDMYGKC 230
           M+E  V  D F LP V +   ++ WV    A  VH   +++GF   ++  ++++++YGKC
Sbjct: 1   MREVRVEHDGFTLPIVNQVTMSI-WVDVAYAGMVHCVGIRMGFSSDLYFCNTMMEVYGKC 59

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +  AR VFD M  R++V+W SMI  YV  G    A+ +F  M  E +EP  V+V  +L
Sbjct: 60  GCMVSARDVFDEMPNRDLVSWTSMISAYVNGGDVFCALDIFEGMRRE-LEPNSVTVMVML 118

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A      L  G+      V NG+  D  L +S +  YS++G  ++  V FS +  ++ V
Sbjct: 119 QACCATQYLVLGRLLQCYVVKNGLLFDTHLQNSFLRMYSRLGRQDEFGVFFSEIDFKNAV 178

Query: 351 TWNLLIASYVQSG--------------------QSDVVVASSIVDMYAKCERI-DNAKQV 389
           +WN+L++ Y   G                    ++  ++ S I    ++C  + +N   +
Sbjct: 179 SWNILMSFYSSMGDIVKVVDILNKIMGEVPLSIETLTILISGIATSDSRCLMLGENLHSL 238

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
                L D +L  +LL  YA  G    ++ LF ++      PN                 
Sbjct: 239 AIKSGLYDGILCTSLLGMYAKFGELENSTSLFKEI------PN----------------- 275

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
                            +++TW  ++S   QN   ++A+  F++M   G+KPS   +   
Sbjct: 276 ----------------RSIVTWGAMMSSFIQNGHFDDAVDIFKQMQVAGLKPSVGILKHL 319

Query: 510 LSACTDVASLRNGRAIHGYLIR--HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
           + A   + +L+ G+AIH  LIR    +   T + TS+++MY +CG+I  A++ FD+   K
Sbjct: 320 IDAYAFLGALQLGKAIHCCLIRIYGFVVCNTRLETSVLNMYVRCGSIASARKCFDLIIIK 379

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           ++  + +MI GY  HGL V+AL LF  +  + + P+++TF ++L+ACSH+GLV+EG E+F
Sbjct: 380 DVVAWTSMIEGYGAHGLGVDALNLFHQMTSEEVTPNNVTFLSLLSACSHSGLVSEGCEIF 439

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             M S   +KP +EH+ C V+LLSR   + EA  +IL M    D  I G+L+  C    +
Sbjct: 440 YSMRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGD 499

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
            ++A Y +  LL+LEPDN G Y  LSN+ A+ G+W+E  ++R ++ EK L K PG S+I+
Sbjct: 500 NKIANYAAHRLLELEPDNVGYYTLLSNSQASVGQWHEAEKLRSLVYEKDLVKKPGWSFIE 559

Query: 748 IGEELHVFVACDRSHPKTEEIYATLALL 775
           +   +H FV+ DRSH +T EIY  L  +
Sbjct: 560 LNGTIHGFVSGDRSHNRTNEIYDVLVYI 587



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/459 (23%), Positives = 212/459 (46%), Gaps = 64/459 (13%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D+     +H   ++ G  F+ + Y    ++  Y KC  +  A  +F  +  +++ SW ++
Sbjct: 26  DVAYAGMVHCVGIRMG--FSSDLYFCNTMMEVYGKCGCMVSARDVFDEMPNRDLVSWTSM 83

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I      G    AL  F  M+ + + P++  +  +L+AC A  ++  GR +  YV+K G 
Sbjct: 84  ISAYVNGGDVFCALDIFEGMRRE-LEPNSVTVMVMLQACCATQYLVLGRLLQCYVVKNGL 142

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
                + +S + MY + G  +E    F  +  +N V+WN ++  Y   G   + + +  +
Sbjct: 143 LFDTHLQNSFLRMYSRLGRQDEFGVFFSEIDFKNAVSWNILMSFYSSMGDIVKVVDILNK 202

Query: 274 MTLEGVEPTRVSVTSIL---SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK 330
           +   G  P  +   +IL    A+++   L  G+  H++A+ +G+  D +L +S++  Y+K
Sbjct: 203 IM--GEVPLSIETLTILISGIATSDSRCLMLGENLHSLAIKSGL-YDGILCTSLLGMYAK 259

Query: 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD-----------------VVVASSI 373
            G LE++  +F  +  R IVTW  +++S++Q+G  D                 V +   +
Sbjct: 260 FGELENSTSLFKEIPNRSIVTWGAMMSSFIQNGHFDDAVDIFKQMQVAGLKPSVGILKHL 319

Query: 374 VDMYA-------------------------------------KCERIDNAKQVFNSIILR 396
           +D YA                                     +C  I +A++ F+ II++
Sbjct: 320 IDAYAFLGALQLGKAIHCCLIRIYGFVVCNTRLETSVLNMYVRCGSIASARKCFDLIIIK 379

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           DVV W +++  Y   G   +A  LF+QM  E ++PN +++ S++     +G ++E  ++F
Sbjct: 380 DVVAWTSMIEGYGAHGLGVDALNLFHQMTSEEVTPNNVTFLSLLSACSHSGLVSEGCEIF 439

Query: 457 LQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
             M+S   ++P+L  +T  +  L++++   EA      M
Sbjct: 440 YSMRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRM 478



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 125/212 (58%), Gaps = 5/212 (2%)

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA 152
           R +  G+ +H+  +K+G +   +  + T L+  YAK   L+ ++ LF  +  +++ +W A
Sbjct: 227 RCLMLGENLHSLAIKSGLY---DGILCTSLLGMYAKFGELENSTSLFKEIPNRSIVTWGA 283

Query: 153 IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV- 211
           ++    + G  + A+  F +MQ  G+ P   +L +++ A   LG +  G+A+H  ++++ 
Sbjct: 284 MMSSFIQNGHFDDAVDIFKQMQVAGLKPSVGILKHLIDAYAFLGALQLGKAIHCCLIRIY 343

Query: 212 GFDGC-VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270
           GF  C   + +S+++MY +CG +  ARK FD +I ++VVAW SMI GY  +GL  +A+ +
Sbjct: 344 GFVVCNTRLETSVLNMYVRCGSIASARKCFDLIIIKDVVAWTSMIEGYGAHGLGVDALNL 403

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           F++MT E V P  V+  S+LSA ++   + EG
Sbjct: 404 FHQMTSEEVTPNNVTFLSLLSACSHSGLVSEG 435



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 191/422 (45%), Gaps = 24/422 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS+      +  A+D+   M+ R  +        +LQ C   + +  G+ +   +
Sbjct: 79  SWTSMISAYVNGGDVFCALDIFEGMR-RELEPNSVTVMVMLQACCATQYLVLGRLLQCYV 137

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +KNG  F  + +++   +  Y++    D     F  +  KN  SW  ++     +G   K
Sbjct: 138 VKNGLLF--DTHLQNSFLRMYSRLGRQDEFGVFFSEIDFKNAVSWNILMSFYSSMGDIVK 195

Query: 166 AL-IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVFVASSL 223
            + I    M E  +S +   +     A      +  G  +H   +K G +DG   + +SL
Sbjct: 196 VVDILNKIMGEVPLSIETLTILISGIATSDSRCLMLGENLHSLAIKSGLYDG--ILCTSL 253

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           + MY K G+LE +  +F  +  R++V W +M+  ++QNG  ++A+ +F +M + G++P+ 
Sbjct: 254 LGMYAKFGELENSTSLFKEIPNRSIVTWGAMMSSFIQNGHFDDAVDIFKQMQVAGLKPSV 313

Query: 284 VSVTSILSASANLDALDEGKQAHAVAV-INGMELDNV-LGSSIINFYSKVGLLEDAEVVF 341
             +  ++ A A L AL  GK  H   + I G  + N  L +S++N Y + G +  A   F
Sbjct: 314 GILKHLIDAYAFLGALQLGKAIHCCLIRIYGFVVCNTRLETSVLNMYVRCGSIASARKCF 373

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
             ++ +D+V W  +I  Y   G                 + ++   Q+ +  +  + V +
Sbjct: 374 DLIIIKDVVAWTSMIEGYGAHGLG--------------VDALNLFHQMTSEEVTPNNVTF 419

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
            +LL+A +  G   E   +FY M+    I P++  +   +    R+ ++ EA  + L+M 
Sbjct: 420 LSLLSACSHSGLVSEGCEIFYSMRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMT 479

Query: 461 SL 462
           SL
Sbjct: 480 SL 481


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 190/579 (32%), Positives = 304/579 (52%), Gaps = 27/579 (4%)

Query: 220  ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN-GLNEEAIRVFYEMTLEG 278
            A +LI  Y   GD   A  VF   + RN + WNS +  +  + G     + VF E+  +G
Sbjct: 459  AKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKG 518

Query: 279  VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
            V       +  L     +  +  G + H   +  G +LD  L  +++NFY +   LE A 
Sbjct: 519  VVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKAN 578

Query: 339  VVFSRMVERDIVTWNLLIASYVQSG--QSDVVVASSIVDMYAKCERIDNAKQVFNSI--- 393
             VF  M   + + WN  I   +QS   Q  V +   +   + K E     + +  SI   
Sbjct: 579  QVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISEL 638

Query: 394  ------------ILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
                        +LR     DV +  +L+  Y        A  +F  M+    + NI +W
Sbjct: 639  GFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMK----NRNIFAW 694

Query: 437  NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
            NS++ G+   G   +A  +  QM+  G++P+L+TW  +ISG     CG EA+ FF +M +
Sbjct: 695  NSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQ 754

Query: 497  TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
             G+ P++ +ITC L AC  ++ L+ G+ IH   IR+       + T+L+DMY+K  ++  
Sbjct: 755  EGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKN 814

Query: 557  AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
            A +VF    +K L  +N MI G+A+ GL  EA+++F  +Q+ G+ PD+ITFT +L+AC +
Sbjct: 815  AHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKN 874

Query: 617  AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            +GL+ EG + F  M +D+++ P +EH+ C+V+LL R G LDEA  +I TMP  PDA I G
Sbjct: 875  SGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWG 934

Query: 677  SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
            +LL +C      + AE  +++L +LEP+N  NY+ + N Y+   RW ++  +R++M   G
Sbjct: 935  ALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAG 994

Query: 737  LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            +R     SWIQI + +HVF + ++ HP   +IY  L  L
Sbjct: 995  VRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQL 1033



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 214/449 (47%), Gaps = 56/449 (12%)

Query: 64  VDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV 123
           +++  E+  +      E+Y   L+ C    D++ G +IH  ++K G  F  + Y+   L+
Sbjct: 508 LEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRG--FDLDVYLRCALM 565

Query: 124 VFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
            FY +C  L+ A+++F  +       W   I LN +    +K +  F +MQ   +  +  
Sbjct: 566 NFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETA 625

Query: 184 VLPNVLKAC-GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
            +  VL+A    LG++  G+  HGYVL+ GFD  V+V +SLIDMY K   L  A+ VFD 
Sbjct: 626 TIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDN 685

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRV-------------------------------- 270
           M  RN+ AWNS++ GY   G+ E+A+R+                                
Sbjct: 686 MKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEA 745

Query: 271 ---FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327
              F +M  EGV P   S+T +L A A+L  L +GK+ H +++ NG   D  + +++I+ 
Sbjct: 746 LAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDM 805

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAK 387
           YSK   L++A  VF R+  + + +WN +I  +   G     +    + ++ + +++    
Sbjct: 806 YSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFG-----LGKEAISVFNEMQKVG--- 857

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRN 446
                 +  D + +  LL+A  + G  GE  + F  M  +  I P +  +  ++    R 
Sbjct: 858 ------VGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRA 911

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           G ++EA D+   + ++ ++P+   W  L+
Sbjct: 912 GYLDEAWDL---IHTMPLKPDATIWGALL 937



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 170/347 (48%), Gaps = 43/347 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRD-MYTGQQIHARILKNG 109
           I +L  EK +++ V+L  +M+    +        +LQ  + +   +  G++ H  +L+NG
Sbjct: 597 ILNLQSEK-LQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNG 655

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
             F  + YV T L+  Y K  +L  A  +F  ++ +N+F+W +++      G+ E AL  
Sbjct: 656 --FDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRL 713

Query: 170 FVEMQEDGVSPD-----------------------------NFVLPN------VLKACGA 194
             +M+++G+ PD                               V+PN      +L+AC +
Sbjct: 714 LNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACAS 773

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           L  +  G+ +H   ++ GF   VFVA++LIDMY K   L+ A KVF  +  + + +WN M
Sbjct: 774 LSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCM 833

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           I+G+   GL +EAI VF EM   GV P  ++ T++LSA  N   + EG + +  ++I   
Sbjct: 834 IMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWK-YFDSMITDY 892

Query: 315 ELDNVLGS--SIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIAS 358
            +   L     +++   + G L++A +++ +  ++ D   W  L+ S
Sbjct: 893 RIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGS 939


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 293/556 (52%), Gaps = 55/556 (9%)

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
            L+  Y  CG+    RKVFD M  RNVV +N MI  YV N   ++ + VF EM   G  P
Sbjct: 58  KLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRP 117

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
              +   +L A +  + L  G   H           +VL         KVGL        
Sbjct: 118 DNYTYPCVLKACSCSENLRYGLLIHG----------DVL---------KVGL-------- 150

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
                     +NL              V + ++ MY KC  +  A++VF+ +I +DVV W
Sbjct: 151 ---------DFNLF-------------VGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSW 188

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN--EAKDMFLQM 459
           N+++A YA   R  +A  +  +M+  G  P+  +  S++         N    + +F+ +
Sbjct: 189 NSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNL 248

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
           +    + NLI+W  +I    +NS   +A+  + +M +  ++P   T    L AC D+++L
Sbjct: 249 E----RKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSAL 304

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
             GR IH Y+ +  LC    +  SL+DMYA+CG +  AKRVFD    +++  + ++IS Y
Sbjct: 305 LLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAY 364

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
            M G    A+ALF  +   G  PDSI F  IL+ACSH+GL++EG   F  M  D+++ P 
Sbjct: 365 GMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPR 424

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           +EH+ C+V+LL R G +DEA  +I  MP +P+  +  +LLS+C      ++    +++LL
Sbjct: 425 IEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLL 484

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           QL P+  G YV LSN YA +GRW EV+++R +MK K +RK PG S +++  ++H F+A D
Sbjct: 485 QLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGD 544

Query: 760 RSHPKTEEIYATLALL 775
            SHP+++EIY  L +L
Sbjct: 545 TSHPQSKEIYEELGVL 560



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 228/455 (50%), Gaps = 31/455 (6%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +G L +      D+ T +++H  I        +N  +  KL+  YA C    +  ++F  
Sbjct: 21  FGLLAKALDQNPDIKTLKKLHTMIFYLNSH--QNPSLGIKLMRSYAACGEPGLTRKVFDE 78

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  +NV  +  +I         +  L+ F EM   G  PDN+  P VLKAC     + +G
Sbjct: 79  MSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYG 138

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             +HG VLKVG D  +FV + LI MYGKCG L EAR+VFD MI ++VV+WNSM+ GY  N
Sbjct: 139 LLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHN 198

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
              ++A+ +  EM   G +P   ++ S++ A AN  + +     +   +   +E  N++ 
Sbjct: 199 MRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSEN---VLYVEKIFVNLERKNLIS 255

Query: 322 SSI-INFYSKVGLLEDAEVVFSRM----VERDIVTWNLL---------------IASYVQ 361
            ++ I  Y K  L   A  ++ +M    VE D +T+  +               I  YV+
Sbjct: 256 WNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVE 315

Query: 362 SGQ--SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
             +   ++++ +S++DMYA+C  +D+AK+VF+ +  RDV  W +L++AY   G+   A  
Sbjct: 316 KKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVA 375

Query: 420 LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGL 478
           LF +M   G +P+ I++ +++     +G ++E +  F QM     + P +  +  L+  L
Sbjct: 376 LFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLL 435

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +    +EA    ++M    I+P+       LS+C
Sbjct: 436 GRAGRVDEAYNIIKQM---PIEPNERVWATLLSSC 467



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 18/184 (9%)

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
           I FF + + T    S   +  AL    D+ +L+    +  YL  H       +   L+  
Sbjct: 10  ITFFIQQILT----SFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQ---NPSLGIKLMRS 62

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           YA CG     ++VFD    + +  YN MI  Y  +    + L +F+ +   G  PD+ T+
Sbjct: 63  YAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTY 122

Query: 608 TNILNACS-----HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
             +L ACS       GL+  G  L VG+  +  V   +      + +  +CG L EA RV
Sbjct: 123 PCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGL------IAMYGKCGCLFEARRV 176

Query: 663 ILTM 666
              M
Sbjct: 177 FDEM 180


>gi|413918046|gb|AFW57978.1| hypothetical protein ZEAMMB73_147394 [Zea mays]
          Length = 729

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 205/682 (30%), Positives = 335/682 (49%), Gaps = 61/682 (8%)

Query: 138 LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW 197
           LF   R ++  SW A++  + R G    AL     M   GV        +V+ AC     
Sbjct: 63  LFDGTRHRDAISWNAVVSGHARHGNVPDALDTAARMHSSGVPFTEATFASVVGACARGRM 122

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
              G   HG V+K G +G     +SL+D Y  C DL   R +F+ +  +N + W+ M+V 
Sbjct: 123 FCAGTQAHGQVIKSGCEGFAVTGASLLDFYSSCFDLRATRTLFESLRPKNELLWSPMVVA 182

Query: 258 YVQNGLNEEAI----------------------------------RVFYEMTLE-GVEPT 282
            V+ GL  EA+                                  ++F ++  + GV P 
Sbjct: 183 LVRFGLLAEALDLLQNTPAPRDVFAWTAVISGYAKGTDQCCGKALQLFVKLLADDGVMPN 242

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
             +  S+L A   L ALD G+  H   +  G   + ++ S++++ Y     L+DA +V++
Sbjct: 243 EYTYDSVLRACVRLGALDFGRSVHGCLIRCGFRSEQLITSALVDLYCTSDALDDALLVYN 302

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            +     +T N LIA  +  G                  R ++AK VF+ +  +D   +N
Sbjct: 303 DLDRPSSITSNTLIAGLISIG------------------RTEHAKMVFSQMPEQDSGSYN 344

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
            ++ AYA  G      R+F +M       N++S NS++   L+NG++ E   +F Q++  
Sbjct: 345 LMIKAYAMEGELEHCRRIFEKMPRR----NMVSLNSMMSVLLQNGRLEEGLKLFKQIKD- 399

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
             + + ITW ++ISG  QN   +EA+  F  M    I+ S +T +  L AC  + +L  G
Sbjct: 400 --ERDTITWNSMISGYIQNDKPSEALKLFVVMCRLSIECSPSTFSALLHACATIGTLEQG 457

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           R +H +L +        + T+L DMY KCG +  A+  F    S  +  + ++I+G A +
Sbjct: 458 RMVHCHLCKTSFDSSDHVGTALADMYFKCGCVIDAQSAFTYVTSPNVASWTSLINGLAQN 517

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G  +EAL+ F  + +  + P+ ITF  +L A + AGLVN+G+++F  M  +  + P+++H
Sbjct: 518 GHWLEALSQFGRMLKHHVKPNEITFLGLLMASARAGLVNKGMKIFYSM-ENFGLVPTVQH 576

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
             CVV+LL R G   EA + I  MP   D  I G+LL+ C  S + E+ E +++ L  + 
Sbjct: 577 CTCVVDLLGRTGRTREAEKFIYEMPLPADGVIWGALLTACWYSMDLEMGEKVAQRLFFMG 636

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
             +   YVA+SN YA  G+W +V +VR  ++     K PGCSWI+I   +HVF+  D++H
Sbjct: 637 TKHRSAYVAMSNIYAKLGKWEDVVKVRTWLRSLNAEKEPGCSWIEIKGIVHVFLVDDQNH 696

Query: 763 PKTEEIYATLALLGMHVRLVSK 784
           P+ E +Y+ L  L  H+ L SK
Sbjct: 697 PERETMYSMLEALVSHISLHSK 718



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 134/579 (23%), Positives = 235/579 (40%), Gaps = 112/579 (19%)

Query: 15  SHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQ--------ISSLSKEKQIREAVDL 66
           SHT    P +++Q   T++         L+    H+        +S  ++   + +A+D 
Sbjct: 35  SHTSLAVPDRIAQQRATQVSFPRGRTRYLFDGTRHRDAISWNAVVSGHARHGNVPDALDT 94

Query: 67  LTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG-DFFARNEYVETKLVVF 125
              M           +  ++  C   R    G Q H +++K+G + FA        L+ F
Sbjct: 95  AARMHSSGVPFTEATFASVVGACARGRMFCAGTQAHGQVIKSGCEGFA---VTGASLLDF 151

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL----------------------- 162
           Y+ C  L     LF  LR KN   W+ ++    R GL                       
Sbjct: 152 YSSCFDLRATRTLFESLRPKNELLWSPMVVALVRFGLLAEALDLLQNTPAPRDVFAWTAV 211

Query: 163 -----------SEKALIGFVE-MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK 210
                        KAL  FV+ + +DGV P+ +   +VL+AC  LG + FGR+VHG +++
Sbjct: 212 ISGYAKGTDQCCGKALQLFVKLLADDGVMPNEYTYDSVLRACVRLGALDFGRSVHGCLIR 271

Query: 211 VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270
            GF     + S+L+D+Y     L++A  V++ +   + +  N++I G +  G  E A  V
Sbjct: 272 CGFRSEQLITSALVDLYCTSDALDDALLVYNDLDRPSSITSNTLIAGLISIGRTEHAKMV 331

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYS 329
           F +M     E    S   ++ A A      EG+  H   +   M   N++  +S+++   
Sbjct: 332 FSQMP----EQDSGSYNLMIKAYAM-----EGELEHCRRIFEKMPRRNMVSLNSMMSVLL 382

Query: 330 KVGLLEDAEVVFSRMV-ERDIVTWNLLIASYVQSGQ------------------------ 364
           + G LE+   +F ++  ERD +TWN +I+ Y+Q+ +                        
Sbjct: 383 QNGRLEEGLKLFKQIKDERDTITWNSMISGYIQNDKPSEALKLFVVMCRLSIECSPSTFS 442

Query: 365 -----------------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
                                        SD V  +++ DMY KC  + +A+  F  +  
Sbjct: 443 ALLHACATIGTLEQGRMVHCHLCKTSFDSSDHV-GTALADMYFKCGCVIDAQSAFTYVTS 501

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
            +V  W +L+   A  G   EA   F +M    + PN I++  +++   R G +N+   +
Sbjct: 502 PNVASWTSLINGLAQNGHWLEALSQFGRMLKHHVKPNEITFLGLLMASARAGLVNKGMKI 561

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           F  M++ G+ P +   T ++  L +     EA  F  EM
Sbjct: 562 FYSMENFGLVPTVQHCTCVVDLLGRTGRTREAEKFIYEM 600



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/513 (20%), Positives = 226/513 (44%), Gaps = 51/513 (9%)

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
             R +FDG   R+ ++WN+++ G+ ++G   +A+     M   GV  T  +  S++ A A
Sbjct: 59  RTRYLFDGTRHRDAISWNAVVSGHARHGNVPDALDTAARMHSSGVPFTEATFASVVGACA 118

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
                  G QAH   + +G E   V G+S+++FYS    L     +F  +  ++ + W+ 
Sbjct: 119 RGRMFCAGTQAHGQVIKSGCEGFAVTGASLLDFYSSCFDLRATRTLFESLRPKNELLWSP 178

Query: 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
           ++ + V+ G     + +  +D+              N+   RDV  W  +++ YA     
Sbjct: 179 MVVALVRFG-----LLAEALDLLQ------------NTPAPRDVFAWTAVISGYAKGTDQ 221

Query: 415 --GEASRLFYQMQL-EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
             G+A +LF ++   +G+ PN  +++SV+   +R G ++  + +   +   G +   +  
Sbjct: 222 CCGKALQLFVKLLADDGVMPNEYTYDSVLRACVRLGALDFGRSVHGCLIRCGFRSEQLIT 281

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           + L+     +   ++A+L + ++     +PS+ T    ++    +    + + +   +  
Sbjct: 282 SALVDLYCTSDALDDALLVYNDL----DRPSSITSNTLIAGLISIGRTEHAKMVFSQMPE 337

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
            D    +     ++  YA  G +   +R+F+  P + +   N+M+S    +G   E L L
Sbjct: 338 QD----SGSYNLMIKAYAMEGELEHCRRIFEKMPRRNMVSLNSMMSVLLQNGRLEEGLKL 393

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           FK ++    + D+IT+ ++++        +E L+LFV M     ++ S   F  +++  +
Sbjct: 394 FKQIKD---ERDTITWNSMISGYIQNDKPSEALKLFVVM-CRLSIECSPSTFSALLHACA 449

Query: 652 RCGNLDEALRVILTMPC----DPDAHIIGSLLST-----CVKSNETELAEYISEHLLQLE 702
             G L++  R++    C    D   H+  +L        CV   ++      S       
Sbjct: 450 TIGTLEQG-RMVHCHLCKTSFDSSDHVGTALADMYFKCGCVIDAQSAFTYVTSP------ 502

Query: 703 PDNPGNYVALSNAYAASGRWNE-VSQVRDIMKE 734
             N  ++ +L N  A +G W E +SQ   ++K 
Sbjct: 503 --NVASWTSLINGLAQNGHWLEALSQFGRMLKH 533



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 5/209 (2%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCR-NFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           IS   +  +  EA+ L   M CR + +  P  +  LL  C     +  G+ +H  + K  
Sbjct: 410 ISGYIQNDKPSEALKLFVVM-CRLSIECSPSTFSALLHACATIGTLEQGRMVHCHLCKTS 468

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
             F  +++V T L   Y KC  +  A   F  +   NV SW ++I    + G   +AL  
Sbjct: 469 --FDSSDHVGTALADMYFKCGCVIDAQSAFTYVTSPNVASWTSLINGLAQNGHWLEALSQ 526

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  M +  V P+      +L A    G V  G  +   +   G    V   + ++D+ G+
Sbjct: 527 FGRMLKHHVKPNEITFLGLLMASARAGLVNKGMKIFYSMENFGLVPTVQHCTCVVDLLGR 586

Query: 230 CGDLEEARK-VFDGMIARNVVAWNSMIVG 257
            G   EA K +++  +  + V W +++  
Sbjct: 587 TGRTREAEKFIYEMPLPADGVIWGALLTA 615


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 207/701 (29%), Positives = 352/701 (50%), Gaps = 105/701 (14%)

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
            Y KC ++  A  +F  +   N  SW  I+    R G   +AL  +  M  +G+ PD  +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLK---VGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
               +  C +   +  G+ +H  +L+   + FD  + + ++LI MY +C DLE ARK FD
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFD--IILGTALITMYARCRDLELARKTFD 118

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM---TLEGVEPTRVSVTSILSASANLDA 298
            M  + +V WN++I GY +NG +  A++++ +M   + EG++P  ++ +S L A + +  
Sbjct: 119 EMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGD 178

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           + +G++                                                  + A 
Sbjct: 179 ISQGRE--------------------------------------------------IEAR 188

Query: 359 YVQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
            V SG  SD +V +++++MY+KC  +++A++VF+ +  RDV+ WNT+++ YA  G + +A
Sbjct: 189 TVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQA 248

Query: 418 SRLFYQMQLEGISPNIISW------------------------------NSVILGFLRN- 446
             LF +M      PN++++                              + VI   L N 
Sbjct: 249 LELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNM 308

Query: 447 -----GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
                  + EA+ +F ++++     ++ITW  LI    Q     +A+  F++M    + P
Sbjct: 309 YTKCSSSLEEARQVFERLRT----RDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAP 364

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV-TSLVDMYAKCGNIHQAKRV 560
           +  T++  LSAC  + + R G+A+H  LI    C    ++  SL++MY +CG++     V
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKAVHA-LIASGRCKADVVLENSLMNMYNRCGSLDDTVGV 423

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F     K L  ++ +I+ YA HG +   L  F  L Q+G+  D +T  + L+ACSH G++
Sbjct: 424 FAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGML 483

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EG++ F+ M  DH + P   HF C+V+LLSR G L+ A  +I  MP  PDA    SLLS
Sbjct: 484 KEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLS 543

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVA-LSNAYAASGRWNEVSQVRDIMKEKGLRK 739
            C   N+T+ A  +++ L +LE ++  + V  LSN YA +GRW++V + R+    +  RK
Sbjct: 544 GCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN---RRAARK 600

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           NPGCS+I+I + +H FVA D+SHP+ E I A +  L   ++
Sbjct: 601 NPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMK 641



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 160/623 (25%), Positives = 276/623 (44%), Gaps = 74/623 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +++ ++    REA+     M     +    ++   +  C   +D+  GQ +HA IL+   
Sbjct: 30  VAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILET-Q 88

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +  + T L+  YA+C  L++A + F  +  K + +W A+I    R G    AL  +
Sbjct: 89  LLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIY 148

Query: 171 VEM---QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
            +M     +G+ PD     + L AC  +G +  GR +    +  G+     V ++LI+MY
Sbjct: 149 QDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMY 208

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
            KCG LE ARKVFD +  R+V+AWN+MI GY + G   +A+ +F  M     +P  V+  
Sbjct: 209 SKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFI 268

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV-GLLEDAEVVFSRMVE 346
            +L+A  NL+ L++G+  H     +G E D V+G+ ++N Y+K    LE+A  VF R+  
Sbjct: 269 GLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRT 328

Query: 347 RDIVTWNLLIASYVQSGQ------------------------------------------ 364
           RD++TWN+LI +YVQ GQ                                          
Sbjct: 329 RDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAV 388

Query: 365 ----------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
                     +DVV+ +S+++MY +C  +D+   VF +I  + +V W+TL+AAYA  G S
Sbjct: 389 HALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHS 448

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTT 473
                 F+++  EG++ + ++  S +      G + E    FL M    G+ P+   +  
Sbjct: 449 RTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLC 508

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           ++  L++      A     +M      P     T  LS C      +    +   L   +
Sbjct: 509 MVDLLSRAGRLEAAENLIHDM---PFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELE 565

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP---------VYNAMISGYAMHG- 583
                  VT L ++YA+ G     ++  +   +++ P           +  ++G   H  
Sbjct: 566 SEDEHSTVTLLSNVYAEAGRWDDVRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPE 625

Query: 584 ---LAVEALALFKNLQQKGIDPD 603
              +A E   L K ++  G  PD
Sbjct: 626 EELIAAEIKRLSKQMKDAGYVPD 648


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 185/611 (30%), Positives = 315/611 (51%), Gaps = 60/611 (9%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ +H  ++ +GF+    +   L+  Y     L +A  + +     + + WN +I  YV+
Sbjct: 112 GKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVR 171

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           NGL+ EA+  + +MT +G+ P + +  S+L A      +  GK+ HA    + +  +  +
Sbjct: 172 NGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFV 231

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
            +S+++ Y+K G L  A  +F  M+ERD V+WN +I+ Y   G     +     +++ K 
Sbjct: 232 HNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKG-----MWKEAFELFGKM 286

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW---- 436
            R++         I  +++ WNT+       G   EA  L   M+  GI  + ++     
Sbjct: 287 -RVEG--------IELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGL 337

Query: 437 -------------------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
                                          N++I  + R   +  A ++F   ++    
Sbjct: 338 GACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRT---- 393

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
            N+ITW +++SG T      EA   F+EML +GI+P+  TI   L  C  VA+L++G+  
Sbjct: 394 KNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEF 453

Query: 526 HGYLIRH----DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           H Y++R     D  L   +  SLVDMYA+ G + +AKR+FD    ++   Y ++I+GY +
Sbjct: 454 HCYILRRAGFKDYLL---LWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGI 510

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
            G   EAL LF  ++++ I PD +T   +L+ACSH+GLV EG++LF  M S + + P +E
Sbjct: 511 QGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLE 570

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           HF C+V+L  R G L +A  +I  MP  P + +  +LL  C      E+ E+ +E LL++
Sbjct: 571 HFACMVDLFGRAGLLHKAKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEM 630

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
            P+N G YV ++N YAA+G W+++++VR  M++ G+RK PGC+W+ +G     F+  D S
Sbjct: 631 RPENSGYYVLIANMYAAAGCWSKLAKVRTYMRDLGVRKAPGCAWVDVGSGFFPFLVDDTS 690

Query: 762 HPKTEEIYATL 772
            P   ++Y  L
Sbjct: 691 KPHVNKLYPLL 701



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 137/554 (24%), Positives = 246/554 (44%), Gaps = 104/554 (18%)

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA 152
           + +  G+Q+H  I+  G  F ++  +  KLV FY   D L  A  +     + +   W  
Sbjct: 107 KSLSQGKQLHTLIISLG--FEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNL 164

Query: 153 IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212
           +I    R GL  +AL  + +M   G+ PD F  P+VLKACG    + FG+ +H  +    
Sbjct: 165 LISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASC 224

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
               +FV +SL+ MY K G+L  AR +F+ M+ R+ V+WN+MI GY   G+ +EA  +F 
Sbjct: 225 LGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFG 284

Query: 273 EMTLEGVEPTRVSVTSI-----------------------------------LSASANLD 297
           +M +EG+E   ++  +I                                   L A +++ 
Sbjct: 285 KMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIG 344

Query: 298 ALDEGKQAHAVAVINGME-LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
           A+  G++ H  A+ +  + +DNV  +++I  YS+   L  A  +F     ++I+TWN ++
Sbjct: 345 AIKLGREIHGSAIRSFYDGVDNV-KNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSML 403

Query: 357 ASYVQSGQSD-----------------VVVASSIVDMYAKCERIDNAKQVFNSIILRD-- 397
           + Y    +S+                  V  +SI+ + A+   + + K+ F+  ILR   
Sbjct: 404 SGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKE-FHCYILRRAG 462

Query: 398 ----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
               ++LWN+L+  YA  G+  EA RLF  +       + +++ S+I G+   G+  EA 
Sbjct: 463 FKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRR----DEVTYTSLIAGYGIQGEGREAL 518

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSA 512
            +F +M+   ++P+ +T   ++S  + +    E I  F+ M    GI P      C    
Sbjct: 519 KLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFAC---- 574

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK-ELPV 571
                                          +VD++ + G +H+AK +    P +    +
Sbjct: 575 -------------------------------MVDLFGRAGLLHKAKEMITRMPYRPSSAM 603

Query: 572 YNAMISGYAMHGLA 585
           +  ++    +HG A
Sbjct: 604 WATLLGACRIHGNA 617


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 190/643 (29%), Positives = 338/643 (52%), Gaps = 84/643 (13%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            F+A+ +I MYGKC   E+AR+VFD +  RN  +W+ ++  YVQN + +EA+ V+ EM  
Sbjct: 2   TFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVR 61

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           + +     +++S+L+A   L  ++EG+     A   G E D V+ +S+I+ ++K G LE+
Sbjct: 62  KEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEE 121

Query: 337 AEVVFSRM-VERDIVTWNLLIASYVQSGQSD----------------------------- 366
           AE VF  M   RDI++   +I +YV+ G++D                             
Sbjct: 122 AESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACS 181

Query: 367 -----------------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
                                  + V ++++ MYAKC  + ++K +F ++ ++DVV WN 
Sbjct: 182 SPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNA 241

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           ++AAY   G   +A  LF++M   G +P+I +++S++       ++ + + + +++ + G
Sbjct: 242 MIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARG 301

Query: 464 ------VQPNLIT-------------------------WTTLISGLTQNSCGNEAILFFQ 492
                 +Q NLI+                         W T+++   Q   G +A+  ++
Sbjct: 302 FDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYK 361

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
            ML  G  P   T +  + +C  + +LR G+ IH             + T+LV+MYAKCG
Sbjct: 362 NMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCG 421

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           ++  AK+ FD   +K++  ++AMI+  A HG A EAL L   +  +GI  + +T +++L+
Sbjct: 422 SLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLH 481

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           ACSH G + EG++ F+G+  D  ++   E+    ++LL R G L EA  V+ TMP     
Sbjct: 482 ACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSF 541

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
             + +LL  C    +    + +++ ++ LEP+NPG+YV L+N YAA+GRW++V+++R  M
Sbjct: 542 VALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYM 601

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           ++KG+++  GCS I+  ++++ F   D S+P+  EI A L  L
Sbjct: 602 RKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERL 644



 Score =  182 bits (462), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 219/492 (44%), Gaps = 56/492 (11%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           A+D   +M+ +  +     Y  +L  C     +  G+ IH  IL++  F   N  V   L
Sbjct: 154 ALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHF--GNISVRNAL 211

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  YAKC +L  +  LF  + VK+V SW A+I      G  + A   F  M   G +PD 
Sbjct: 212 ITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDI 271

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
           +   ++L AC +   +  GR +H  +   GFD    + ++LI M+ +CG LE AR+ F  
Sbjct: 272 YTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYS 331

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           +  + + AWN+M+  Y Q    ++A+ ++  M LEG  P R + +S++ + A+L AL EG
Sbjct: 332 IEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG 391

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           K  H  +   G E D +LG++++N Y+K G L DA+  F  +  +D+V+W+ +IA+  Q 
Sbjct: 392 KFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQH 451

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G ++                                                 EA  L +
Sbjct: 452 GHAE-------------------------------------------------EALELSH 462

Query: 423 QMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQN 481
            M L+GI+ N ++ +SV+      G++ E  D F+ + Q  G++ +       I  L + 
Sbjct: 463 LMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRA 522

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541
               EA      M     K S   +   L  C     +R G+A+   ++  +   P   V
Sbjct: 523 GWLKEAEHVLHTM---PFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYV 579

Query: 542 TSLVDMYAKCGN 553
             L +MYA  G 
Sbjct: 580 L-LNNMYAAAGR 590



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 113/503 (22%), Positives = 211/503 (41%), Gaps = 107/503 (21%)

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------- 363
           D  L + II  Y K    EDA  VF R+ +R+  +W++L+  YVQ+              
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 364 ---------------------------------------QSDVVVASSIVDMYAKCERID 384
                                                  + DVVVA+S++ ++AKC  ++
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 385 NAKQVFNSI-ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW------- 436
            A+ VF S+  +RD++    ++ AY   G++  A   +++M+ +G+ P+  ++       
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 437 ----------------------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
                                       N++I  + + G + ++K +FL M       ++
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDV----KDV 236

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           ++W  +I+  T      +A   F  M   G  P   T +  L AC     L +GR +H  
Sbjct: 237 VSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVR 296

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           +          +  +L+ M+ +CG++  A+R F     KEL  +N M++ YA      +A
Sbjct: 297 ITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDA 356

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHF 643
           L L+KN+  +G  PD  TF++++++C+  G + EG  +       G   D  +  ++   
Sbjct: 357 LFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTAL--- 413

Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
              VN+ ++CG+L +A +    +  + D     ++++   +    E A  +S HL+ L+ 
Sbjct: 414 ---VNMYAKCGSLADAKKSFDGIS-NKDVVSWSAMIAASAQHGHAEEALELS-HLMNLQG 468

Query: 704 DNPGNYVALSNAYAAS--GRWNE 724
                  A S  +A S  GR  E
Sbjct: 469 IAQNEVTASSVLHACSHGGRLYE 491


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 187/584 (32%), Positives = 293/584 (50%), Gaps = 93/584 (15%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H +++K       F+ + ++D+     + E A  +F  +   N   +N+MI  Y  N
Sbjct: 31  KKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHN 90

Query: 262 GLNEEAIRVFYEMTLEG-----VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
            +   AI V+ +M         + P + +   ++ + A L   D GKQ H          
Sbjct: 91  KVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHG--------- 141

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
                  +  F  K                                  S+ VV +S+V+M
Sbjct: 142 ------HVFKFGQK----------------------------------SNTVVENSLVEM 161

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           Y KC+ +D+A +VF  +  RD V                                   SW
Sbjct: 162 YVKCDSLDDAHKVFEEMTERDAV-----------------------------------SW 186

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           N++I G +R GQM  A+ +F +MQ       + +WT ++SG  +  C  +A+ FF+ M  
Sbjct: 187 NTLISGHVRLGQMRRARAIFEEMQD----KTIFSWTAIVSGYARIGCYADALEFFRRMQM 242

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
            GI+P   ++   L AC  + +L  G+ IH Y  +        +  +L++MYAKCG+I +
Sbjct: 243 VGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDE 302

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
            +R+FD    +++  ++ MI G A HG A EA+ LF+ +Q+  I+P+ ITF  +L+AC+H
Sbjct: 303 GRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAH 362

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
           AGL+NEGL  F  M  D+ ++P +EH+GC+VNLL   G LD+AL +I  MP  PD+ I G
Sbjct: 363 AGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWG 422

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           SLLS+C   +  E+A    EHLL+LEP + GNYV LSN YA  G+W+ VS++R +M+ K 
Sbjct: 423 SLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKS 482

Query: 737 LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           ++K PGCS I++   +  F + D S P ++ IY  L LL MH R
Sbjct: 483 MKKTPGCSSIEVDNMVQEFASGDDSKPFSKAIYRVLKLLVMHQR 526



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/475 (25%), Positives = 225/475 (47%), Gaps = 64/475 (13%)

Query: 67  LTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFY 126
           L  +K R  +   +I+  +L+ C    ++   ++IHA I+K     +++ ++ TK+V   
Sbjct: 5   LRALKIREME---DIFVPILKNC---PNIVELKKIHAHIVKFS--LSQSSFLVTKMVDVC 56

Query: 127 AKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-----QEDGVSPD 181
                 + A+ LF R+   N F + A+I       +   A+  + +M      E+ + PD
Sbjct: 57  NHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPD 116

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
            F  P V+K+C  L     G+ VHG+V K G      V +SL++MY KC  L++A KVF+
Sbjct: 117 KFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFE 176

Query: 242 GMIARNVVAWNSMI-------------------------------VGYVQNGLNEEAIRV 270
            M  R+ V+WN++I                                GY + G   +A+  
Sbjct: 177 EMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEF 236

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK 330
           F  M + G+EP  +S+ S+L A A L AL+ GK  H  A   G   +  + +++I  Y+K
Sbjct: 237 FRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAK 296

Query: 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVF 390
            G +++   +F +M ERD+++W+ +I      G++               E I+  +++ 
Sbjct: 297 CGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAH--------------EAIELFQEMQ 342

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQM 449
            + I  +++ +  LL+A A  G   E  R F  M+ +  I P +  +  ++     +G++
Sbjct: 343 KAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRL 402

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
           ++A ++  +M    ++P+   W +L+S    +S    A++  + +LE  ++P+ T
Sbjct: 403 DQALELIKKMP---MKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLE--LEPADT 452



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 168/361 (46%), Gaps = 60/361 (16%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASR-------------------- 137
           G+Q+H  + K G     N  VE  LV  Y KCD+LD A +                    
Sbjct: 136 GKQVHGHVFKFGQ--KSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGH 193

Query: 138 -----------LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
                      +F  ++ K +FSW AI+    R+G    AL  F  MQ  G+ PD   L 
Sbjct: 194 VRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLV 253

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           +VL AC  LG +  G+ +H Y  K GF   + V ++LI+MY KCG ++E R++FD M  R
Sbjct: 254 SVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNER 313

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           +V++W++MIVG   +G   EAI +F EM    +EP  ++   +LSA A+   L+EG    
Sbjct: 314 DVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEG---- 369

Query: 307 AVAVINGMELDNVLGSSI------INFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASY 359
            +     M+ D  +   +      +N     G L+ A  +  +M ++ D   W  L++S 
Sbjct: 370 -LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSC 428

Query: 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
                S++ +A   ++   + E  D      N ++L ++         YADLG+    SR
Sbjct: 429 --RSHSNLEIAVIAMEHLLELEPADTG----NYVLLSNL---------YADLGKWDGVSR 473

Query: 420 L 420
           +
Sbjct: 474 M 474


>gi|224101423|ref|XP_002312273.1| predicted protein [Populus trichocarpa]
 gi|222852093|gb|EEE89640.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 221/748 (29%), Positives = 357/748 (47%), Gaps = 89/748 (11%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  L + C   R +    Q+HA +       +      TKL+  YA+  ++  ++ +F  
Sbjct: 4   YMPLFRSCKTLRQL---NQLHAHLSVTN--LSNTAQASTKLIESYAQMGSIKSSTLVFET 58

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
            +  + F W  +I  +      E+A++ + +M  +     +FV P+VL+AC   G +  G
Sbjct: 59  YQNPDSFMWGVLIKCHVWSHAFEEAILLYDKMLCNEAQITSFVFPSVLRACAGFGDMFIG 118

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             VHG ++K GFD   F+ +SL+ +YG+ G L +ARKVFD +  R++V+W+S+I  YV  
Sbjct: 119 AKVHGRIIKCGFDNDPFIETSLLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYVDK 178

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G   EA+ +F  +  E V+   V + S+  A + L  L   K  H   V   ++    L 
Sbjct: 179 GEANEALEMFRLLVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALD 238

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI------------------------- 356
           +S+I  YS    L  AE +F  M  +  ++W  +I                         
Sbjct: 239 NSLIEMYSSCDDLYSAERIFVNMANKTFISWTSMIYCYNRSGWFKEAFEIFVKMLELKVE 298

Query: 357 ---------------ASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQ 388
                           S+++ G+              D  +   ++++YA C ++   ++
Sbjct: 299 PNVITIMGVLKSCSGLSWLREGKLIHCYALKKGMTFQDDCLGPVLIELYAGCGKLGYCEK 358

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGF 443
           V  +I  R+VV WNTLL+  A  G   EA  LF QMQ  G+  +  S +S I     +G 
Sbjct: 359 VLLAIGERNVVSWNTLLSINARQGLFEEALVLFVQMQKRGLMLDFFSLSSAISACGNVGS 418

Query: 444 LRNGQMNEAKDM-------FLQMQSLGV------------------QPNLITWTTLISGL 478
           L+ G+      +       F++   +G+                  Q + + W ++ISG 
Sbjct: 419 LQLGRQIHGYAIKRCILGEFVKNALIGMYSRCGFSDSAYMIFNDIKQKSSVAWNSIISGF 478

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
            Q+    EAI    +M    +K +      A+ AC D+  L  G+ +H  LI + +    
Sbjct: 479 VQSGNSIEAIHLVDQMYLNCLKITDVVFLSAIQACADMVCLEKGKWLHHKLIMYGVEKDL 538

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            I T+L DMYAKCG++  A+ VF     K +  ++AMISGY MHG    A+  F  + + 
Sbjct: 539 YIETALTDMYAKCGDLRTAEGVFHSMSEKSVVSWSAMISGYGMHGRIDAAITFFNQMVEL 598

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           GI P+ ITF NIL+ACSH+G V +G + +  +  D  V+PS EHF C+V+LLSR G+++ 
Sbjct: 599 GIKPNHITFMNILSACSHSGSVEQG-KFYFDLMRDFGVEPSSEHFACLVDLLSRAGDVNG 657

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           A ++I +MP   DA ++G+LL+ C      ++   I + LL++   + G+Y  LSN YA 
Sbjct: 658 AYKIINSMPFPADASVLGNLLNGCRIHQRMDMIPEIEKDLLKIRTSDTGHYSLLSNIYAE 717

Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
            G W      R IM+  G +K PG S I
Sbjct: 718 IGNWAARENTRGIMERSGYKKVPGYSAI 745



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 146/290 (50%), Gaps = 3/290 (1%)

Query: 55  SKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFAR 114
           +++    EA+ L  +M+ R   +        +  C     +  G+QIH   +K       
Sbjct: 379 ARQGLFEEALVLFVQMQKRGLMLDFFSLSSAISACGNVGSLQLGRQIHGYAIKRCIL--- 435

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ 174
            E+V+  L+  Y++C   D A  +F  ++ K+  +W +II    + G S +A+    +M 
Sbjct: 436 GEFVKNALIGMYSRCGFSDSAYMIFNDIKQKSSVAWNSIISGFVQSGNSIEAIHLVDQMY 495

Query: 175 EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLE 234
            + +   + V  + ++AC  +  +  G+ +H  ++  G +  +++ ++L DMY KCGDL 
Sbjct: 496 LNCLKITDVVFLSAIQACADMVCLEKGKWLHHKLIMYGVEKDLYIETALTDMYAKCGDLR 555

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
            A  VF  M  ++VV+W++MI GY  +G  + AI  F +M   G++P  ++  +ILSA +
Sbjct: 556 TAEGVFHSMSEKSVVSWSAMISGYGMHGRIDAAITFFNQMVELGIKPNHITFMNILSACS 615

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +  ++++GK    +    G+E  +   + +++  S+ G +  A  + + M
Sbjct: 616 HSGSVEQGKFYFDLMRDFGVEPSSEHFACLVDLLSRAGDVNGAYKIINSM 665


>gi|357167336|ref|XP_003581113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Brachypodium distachyon]
          Length = 687

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 206/673 (30%), Positives = 331/673 (49%), Gaps = 61/673 (9%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A RLF  +R + V +W A++  + R G    AL     M   GVSP      +VL AC  
Sbjct: 15  ARRLFDGMRRRTVVTWNAMVAGHARCGSFLDALDLAARMHRSGVSPSEATFASVLGACAR 74

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN------- 247
              +  G  VH  V+K G +    V +SL+D Y  C DL  A  +FD +  RN       
Sbjct: 75  GRRLCVGAQVHCQVVKSGSENFEVVGASLLDFYSSCFDLSAAHMLFDTLHPRNERLWSPM 134

Query: 248 -------------------------VVAWNSMIVGYVQNGLN--EEAIRVFYEMTLE-GV 279
                                    V AW ++I GY +   +   +AI +F  M  + GV
Sbjct: 135 VVALVRFNLLSDALDLLDRMPAPRDVFAWTAVISGYARGASDCCRKAIGLFVRMLADHGV 194

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P   +  S+L A   + ALD G+  H   + +G + D ++ S++++ Y     + DA +
Sbjct: 195 MPNEFTFDSVLRACVKMGALDFGRSVHGCLLRSGFDTDKLITSALVDLYCSSDAVADALL 254

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
           V++ +    ++T N LI   +    +                  D AK VF+ +   D  
Sbjct: 255 VYNDLEMPSLITSNALIGGLISMHMT------------------DEAKIVFSQMPEHDSS 296

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
            +N ++ AY   G+  +  R+F +M       NI++ NS++   L+NG++ E   +F Q+
Sbjct: 297 TYNLMIKAYGIEGKLEQCQRMFEKMPRR----NIVTLNSMMSVLLQNGKLEEGLKLFEQI 352

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
           +    + N ITW ++ISG  QN+  +EA+  F  M    I  S +T    L AC  V ++
Sbjct: 353 KD---ERNTITWNSMISGYIQNNHSSEALKLFVTMRRLSIICSPSTFPTLLHACGTVGTI 409

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
             G+ +H +L +        + T+LVDMY+KCG +  A   F    S  +  + ++I+G 
Sbjct: 410 EQGKMVHAHLCKTPFESNGYVGTALVDMYSKCGCVSDALDAFCCITSPNVASWTSVINGL 469

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
           A +G  ++A+  F  + +  I+P+ ITF  +L A S AGLVN+G+  F  M   + + P+
Sbjct: 470 AHNGQCLKAIVEFGRMLRHRINPNEITFLGLLMASSRAGLVNKGMRFFHSM-ERYGLLPT 528

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           +EH+ C V+LL R G + EA + I  MP   D    G+LL+ C  S + E+ E ++E L 
Sbjct: 529 VEHYTCAVDLLGRNGRIIEAEKFISAMPVPADGVAWGALLTACWYSMDLEMGEKVAEKLF 588

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
            +   +   YVA+SN YA  G+W +V +VR  ++    +K PGCSWI + + +HVF+  D
Sbjct: 589 FMGTKHKSAYVAMSNIYAKLGKWEDVVKVRTRLRSLDAKKEPGCSWIGVKDTVHVFLVED 648

Query: 760 RSHPKTEEIYATL 772
           R+HP+ +EIY  L
Sbjct: 649 RNHPERDEIYLML 661



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 137/523 (26%), Positives = 224/523 (42%), Gaps = 80/523 (15%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           +A+DL   M           +  +L  C   R +  G Q+H +++K+G      E V   
Sbjct: 45  DALDLAARMHRSGVSPSEATFASVLGACARGRRLCVGAQVHCQVVKSGS--ENFEVVGAS 102

Query: 122 LVVFYAKCDALDVASRLFCRLRVKN--------------------------------VFS 149
           L+ FY+ C  L  A  LF  L  +N                                VF+
Sbjct: 103 LLDFYSSCFDLSAAHMLFDTLHPRNERLWSPMVVALVRFNLLSDALDLLDRMPAPRDVFA 162

Query: 150 WAAIIGLNCRVGLSE---KALIGFVEMQED-GVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           W A+I    R G S+   KA+  FV M  D GV P+ F   +VL+AC  +G + FGR+VH
Sbjct: 163 WTAVISGYAR-GASDCCRKAIGLFVRMLADHGVMPNEFTFDSVLRACVKMGALDFGRSVH 221

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
           G +L+ GFD    + S+L+D+Y     + +A  V++ +   +++  N++I G +   + +
Sbjct: 222 GCLLRSGFDTDKLITSALVDLYCSSDAVADALLVYNDLEMPSLITSNALIGGLISMHMTD 281

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSI 324
           EA  VF +M      P   S T  L   A      EGK      +   M   N++  +S+
Sbjct: 282 EAKIVFSQM------PEHDSSTYNLMIKA---YGIEGKLEQCQRMFEKMPRRNIVTLNSM 332

Query: 325 INFYSKVGLLEDAEVVFSRMV-ERDIVTWNLLIASYVQSGQSD--------------VVV 369
           ++   + G LE+   +F ++  ER+ +TWN +I+ Y+Q+  S               +  
Sbjct: 333 MSVLLQNGKLEEGLKLFEQIKDERNTITWNSMISGYIQNNHSSEALKLFVTMRRLSIICS 392

Query: 370 ASSIVDMYAKCERIDNAKQ-------VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
            S+   +   C  +   +Q       +  +    +  +   L+  Y+  G   +A   F 
Sbjct: 393 PSTFPTLLHACGTVGTIEQGKMVHAHLCKTPFESNGYVGTALVDMYSKCGCVSDALDAFC 452

Query: 423 QMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
            +     SPN+ SW SVI G   NGQ  +A   F +M    + PN IT+  L+   ++  
Sbjct: 453 CIT----SPNVASWTSVINGLAHNGQCLKAIVEFGRMLRHRINPNEITFLGLLMASSRAG 508

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
             N+ + FF  M   G+ P+    TCA+         RNGR I
Sbjct: 509 LVNKGMRFFHSMERYGLLPTVEHYTCAVDLLG-----RNGRII 546



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 3/208 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS   +     EA+ L   M+  +    P  +  LL  C     +  G+ +HA + K   
Sbjct: 365 ISGYIQNNHSSEALKLFVTMRRLSIICSPSTFPTLLHACGTVGTIEQGKMVHAHLCKTP- 423

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  N YV T LV  Y+KC  +  A   FC +   NV SW ++I      G   KA++ F
Sbjct: 424 -FESNGYVGTALVDMYSKCGCVSDALDAFCCITSPNVASWTSVINGLAHNGQCLKAIVEF 482

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M    ++P+      +L A    G V  G      + + G    V   +  +D+ G+ 
Sbjct: 483 GRMLRHRINPNEITFLGLLMASSRAGLVNKGMRFFHSMERYGLLPTVEHYTCAVDLLGRN 542

Query: 231 GDLEEARKVFDGM-IARNVVAWNSMIVG 257
           G + EA K    M +  + VAW +++  
Sbjct: 543 GRIIEAEKFISAMPVPADGVAWGALLTA 570


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 185/629 (29%), Positives = 318/629 (50%), Gaps = 54/629 (8%)

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           +P  F+L ++L A    G +   R V   +     D  +F  ++L+        + +  +
Sbjct: 45  APPTFLLNHLLTAYAKSGRLARARRVFDEMP----DPNLFTRNALLSALAHSRLVPDMER 100

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLD 297
           +F  M  R+ V++N++I G+   G    +++++  +  E  V PTR+++++++  ++ L 
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
               G   H   +  G      +GS +++ Y+K+GL+ DA  VF  M  + +V +N LI 
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
             +                  +C+ I++AK +F  ++ RD + W T++      G   EA
Sbjct: 221 GLL------------------RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEA 262

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK----------------------DM 455
             +F +M+ EG+  +  ++ S++          E K                      DM
Sbjct: 263 LDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDM 322

Query: 456 FLQMQSLGVQP---------NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           + + +S+ +           N+I+WT +I G  QN+C  EA+  F EM   GIKP   T+
Sbjct: 323 YSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
              +S+C ++ASL  G   H   +   L     +  +LV +Y KCG+I  A R+FD    
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            +   + A+++GYA  G A E + LF+ +   G+ PD +TF  +L+ACS AGLV +G + 
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDY 502

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  M  DH + P  +H+ C+++L SR G   EA   I  MP  PDA    +LLS+C    
Sbjct: 503 FDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
             E+ ++ +E+LL+ +P NP +YV L + +AA G+W EV+ +R  M+++ ++K PGCSWI
Sbjct: 563 NMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWI 622

Query: 747 QIGEELHVFVACDRSHPKTEEIYATLALL 775
           +   ++H+F A D+SHP +  IY  L  L
Sbjct: 623 KYKNKVHIFSADDQSHPFSSRIYEKLEWL 651



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/471 (29%), Positives = 231/471 (49%), Gaps = 66/471 (14%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D   G  +H ++L+ G  F    +V + LV  YAK   +  A R+F  +  K V  +  +
Sbjct: 161 DRALGHSVHCQVLRLG--FGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 154 IG--LNCRV-----------------------------GLSEKALIGFVEMQEDGVSPDN 182
           I   L C++                             GL  +AL  F  M+ +GV  D 
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQ 278

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
           +   ++L ACGAL     G+ +H Y+ +  ++  VFV S+L+DMY KC  +  A  VF  
Sbjct: 279 YTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRR 338

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  RN+++W +MIVGY QN  +EEA+R F EM ++G++P   ++ S++S+ ANL +L+EG
Sbjct: 339 MTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
            Q H +A+++G+     + ++++  Y K G +EDA  +F  M   D V+W  L+  Y Q 
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQF 458

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G++               E ID  +++  + +  D V +  +L+A +  G   +    F 
Sbjct: 459 GKAK--------------ETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFD 504

Query: 423 QMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
            MQ +  I P    +  +I  + R+G+  EA++   QM      P+   W TL+S     
Sbjct: 505 SMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPH---SPDAFGWATLLS----- 556

Query: 482 SC---GNEAILFF--QEMLETGIK-PSTTTITCALSAC----TDVASLRNG 522
           SC   GN  I  +  + +LET  + P++  + C++ A     T+VA LR G
Sbjct: 557 SCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRG 607



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 212/502 (42%), Gaps = 89/502 (17%)

Query: 137 RLFCRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
           RLF  +  ++  S+ A+I G +     +    +    ++E+ V P    L  ++    AL
Sbjct: 100 RLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASAL 159

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV------ 249
                G +VH  VL++GF    FV S L+DMY K G + +AR+VF  M A+ VV      
Sbjct: 160 SDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLI 219

Query: 250 -------------------------AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
                                     W +M+ G  QNGL  EA+ VF  M  EGV   + 
Sbjct: 220 TGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQY 279

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +  SIL+A   L A +EGKQ HA       E +  +GS++++ YSK   +  AE VF RM
Sbjct: 280 TFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339

Query: 345 VERDIVTWNLLIASYVQSGQSD-------------------------------------- 366
             R+I++W  +I  Y Q+  S+                                      
Sbjct: 340 TCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGA 399

Query: 367 --------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                         + V++++V +Y KC  I++A ++F+ +   D V W  L+  YA  G
Sbjct: 400 QFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFG 459

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITW 471
           ++ E   LF +M + G+ P+ +++  V+    R G + +  D F  MQ    + P    +
Sbjct: 460 KAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHY 519

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
           T +I   +++    EA  F ++M  +   P        LS+C    ++  G+     L+ 
Sbjct: 520 TCMIDLYSRSGRFKEAEEFIKQMPHS---PDAFGWATLLSSCRLRGNMEIGKWAAENLLE 576

Query: 532 HDLCLPTPIVTSLVDMYAKCGN 553
            D   P   V  L  M+A  G 
Sbjct: 577 TDPQNPASYVL-LCSMHAAKGQ 597



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 168/325 (51%), Gaps = 16/325 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ++ L++     EA+D+   M+     I    +G +L  C        G+QIHA I +   
Sbjct: 250 VTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRT-- 307

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
           ++  N +V + LV  Y+KC ++ +A  +F R+  +N+ SW A+I    +   SE+A+  F
Sbjct: 308 WYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAF 367

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EMQ DG+ PD+F L +V+ +C  L  +  G   H   L  G    + V+++L+ +YGKC
Sbjct: 368 SEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKC 427

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E+A ++FD M   + V+W +++ GY Q G  +E I +F +M + G++P  V+   +L
Sbjct: 428 GSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVL 487

Query: 291 SASAN-------LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           SA +         D  D  ++ H +  I+    D+   + +I+ YS+ G  ++AE    +
Sbjct: 488 SACSRAGLVEKGCDYFDSMQKDHDIVPID----DHY--TCMIDLYSRSGRFKEAEEFIKQ 541

Query: 344 MVER-DIVTWNLLIASYVQSGQSDV 367
           M    D   W  L++S    G  ++
Sbjct: 542 MPHSPDAFGWATLLSSCRLRGNMEI 566


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 197/645 (30%), Positives = 325/645 (50%), Gaps = 92/645 (14%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG---VEPTRVS 285
           K G L  AR++FD M  ++ ++W ++I GYV    + EA+ +F  M +E    ++P  +S
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 286 ---------------------------VTSILSASANLDALDE-GKQAHAVAVINGMELD 317
                                      V S+   SA LD   + GK      V + M + 
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 318 NVLG-SSIINFYSKVGLLEDAEVVFSRM----VERDIVTWNLLIASYVQSGQSDV----- 367
           NV+  ++II    + G  ++A V FS M    VE D  T+ + + +   SG  +      
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 368 ------------VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                        VA+++  MY KC +++    +F  + +RDVV W T++     +G+  
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300

Query: 416 EASRLFYQMQLEGISPN---------------IISW--------------------NSVI 440
            A + F +M+   +SPN                I W                    NS++
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             + + GQ+  +  +F +M     + ++++W+T+I+G +Q    +EA      M   G K
Sbjct: 361 TMYAKCGQLTSSSVIFHEM----TRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPK 416

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P+   +   LSAC ++A L +G+ +H Y++   L     ++++L++MY KCG+I +A R+
Sbjct: 417 PTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRI 476

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           FD + + ++  + AMI+GYA HG + E + LF+ + + G+ PDS+TF  +L+ACSHAGLV
Sbjct: 477 FDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLV 536

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
           + G   F  M   +Q+ PS EH+GC+++LL R G L +A  +I  MP   D  +  +LL 
Sbjct: 537 DLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLR 596

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C    + E     +E +LQLEP+  G ++ L+N YA+ G+W E + +R +MK KG+ K 
Sbjct: 597 ACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKE 656

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           PG SWI++ + +  FVA DRSHP+ E+IY  L LL     L   V
Sbjct: 657 PGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLLASRTELADCV 701



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 214/426 (50%), Gaps = 20/426 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+ L +    +EA+   +EM     +     +   L+ C     +  G++IHA+ +K G 
Sbjct: 189 ITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKG- 247

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +V   L   Y KC  L+    LF ++ +++V SW  II    ++G  E A+  F
Sbjct: 248 -FDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAF 306

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           + M+E  VSP+ +    V+  C  L  + +G  +H  +L +G    + V +S++ MY KC
Sbjct: 307 IRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKC 366

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L  +  +F  M  R++V+W+++I GY Q G   EA  +   M +EG +PT  ++ S+L
Sbjct: 367 GQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVL 426

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA  N+  L+ GKQ HA  +  G+E   ++ S++IN Y K G +E+A  +F      DIV
Sbjct: 427 SACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIV 486

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           +W  +I  Y + G S       ++D++ K  R+          +  D V +  +L+A + 
Sbjct: 487 SWTAMINGYAEHGYS-----REVIDLFEKIPRVG---------LRPDSVTFIGVLSACSH 532

Query: 411 LGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
            G      R F  M  +  ISP+   +  +I    R G++++A+ M   ++++    + +
Sbjct: 533 AGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHM---IEAMPFHRDDV 589

Query: 470 TWTTLI 475
            W+TL+
Sbjct: 590 VWSTLL 595



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 139/329 (42%), Gaps = 50/329 (15%)

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           V ++  +D+       DN  Q  + I   D+   N  L      G  G A R+F +M   
Sbjct: 19  VASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMS-- 76

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
               + ISW ++I G++       A D                              +EA
Sbjct: 77  --QKDEISWTTLISGYV------NAND-----------------------------SSEA 99

Query: 488 ILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           +L F+ M +E+G++     ++ A  AC   + +  G  +HGY ++  L     + ++L+D
Sbjct: 100 LLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLD 159

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MY K G I + +RVF   P + +  + A+I+G    G   EAL  F  + +  ++ DS T
Sbjct: 160 MYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYT 219

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS----RCGNLDEALRV 662
           F   L AC+ +G +N G E+         +K   +    V N L+    +CG L+  L +
Sbjct: 220 FAIALKACADSGALNYGREIHA-----QAMKKGFDVSSFVANTLATMYNKCGKLEYGLTL 274

Query: 663 ILTMPCDPDAHIIGSLLSTCVKSNETELA 691
              M    D     ++++T V+  + E A
Sbjct: 275 FEKMSM-RDVVSWTTIITTLVQMGQEECA 302


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 216/743 (29%), Positives = 356/743 (47%), Gaps = 104/743 (13%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           ++HA  + +G   ++   +  KLV  Y+      +A+  F      + F W ++I  +  
Sbjct: 30  RVHALAVTSG--LSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHHC 87

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF----DG 215
                 AL     M      P  F +P    A   LG +G G +VH Y ++ G      G
Sbjct: 88  ASDFVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDGG 147

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            V V SSL+ MY +CG + +A K+F+ M  R+VVAW +++ G V+NG   + +R   EM 
Sbjct: 148 SVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMV 207

Query: 276 -LEG---VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
            L G     P   ++ S L A   LD L+ G+  H  AV  G+    ++ S++ + YSK 
Sbjct: 208 RLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKC 267

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASY-------------------------------- 359
              EDA  +F  + E+D+V+W  LI  Y                                
Sbjct: 268 HSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLL 327

Query: 360 --------VQSGQS------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
                   V  G++            +V+V ++++ MY K E +DNA +VF  +  RD  
Sbjct: 328 SGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDAD 387

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-------------LG---- 442
            WN ++  Y   G   +   L+ +MQ       +   NS++             LG    
Sbjct: 388 SWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAH 447

Query: 443 ---------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
                                + R G+ + A  +F   +   ++ +++TW TLIS     
Sbjct: 448 CYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAK---LKGDVVTWNTLISSYAHL 504

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541
              N A+  + +ML  G+ P++TT+   +SAC ++ +L  G  IH Y+          I 
Sbjct: 505 GHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSIN 564

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
           T+L+DMYAKCG +  A+R+FD     ++  +N MISGY MHG A +AL LF  ++   I 
Sbjct: 565 TALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIK 624

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
           P+ +TF  IL+AC H+GL+ EG +LF  M   + ++P+++H+ C+V+LL + G+L EA  
Sbjct: 625 PNGVTFLAILSACCHSGLLEEGRQLFTRM-GKYSLEPNLKHYACMVDLLGKSGHLQEAED 683

Query: 662 VILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721
           ++L MP +PD  I G+LLS C   ++ E+   I++     + +N G Y+ +SN+Y ++ +
Sbjct: 684 MVLAMPVEPDGGIWGTLLSACKLHDDFEMGLRIAKKAFASDAENEGYYILISNSYGSAKK 743

Query: 722 WNEVSQVRDIMKEKGLRKNPGCS 744
           W+E+ ++R+ MK  G++K  G S
Sbjct: 744 WDEIEKLREAMKNHGVQKGAGWS 766



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 207/421 (49%), Gaps = 23/421 (5%)

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           IREA++L  EM     Q    +   LL G     +++ G+  HA I+K    F  N  V 
Sbjct: 301 IREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRN--FGDNVLVG 358

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
             L+  Y K + +D A R+F  L  ++  SW  +I   C+ G   K L  + EMQ     
Sbjct: 359 NALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTY 418

Query: 180 P---DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
               D   L + + +C  L  +  GR+ H Y +K   D    VA+ LI MYG+CG  + A
Sbjct: 419 EFLCDANSLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHA 478

Query: 237 RKVFD-GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
            K+F    +  +VV WN++I  Y   G +  A+ ++ +M  EG+ P   ++ +++SA AN
Sbjct: 479 CKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACAN 538

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L AL+ G++ H+     G + D  + +++I+ Y+K G L  A  +F  M++ D+V WN++
Sbjct: 539 LVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVM 598

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
           I+ Y   G+     A   ++++ K E            I  + V +  +L+A    G   
Sbjct: 599 ISGYGMHGE-----AKQALELFGKME---------GGSIKPNGVTFLAILSACCHSGLLE 644

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           E  +LF +M    + PN+  +  ++    ++G + EA+DM L M    V+P+   W TL+
Sbjct: 645 EGRQLFTRMGKYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMP---VEPDGGIWGTLL 701

Query: 476 S 476
           S
Sbjct: 702 S 702


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 196/661 (29%), Positives = 322/661 (48%), Gaps = 94/661 (14%)

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H   +K+G    V+  +++++ Y KC +L  A  +FD M  R+ V+WN+MI G++  G  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           E +  V   M   G E  R +  S+L   A       G+Q H++ +  G   +   GS++
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV----------------- 367
           ++ Y+K   LEDA + F  + + + V+WN +I  Y Q+G  +                  
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 368 -----------------------------------VVASSIVDMYAKCERIDNAKQVFNS 392
                                               + ++++  Y+KC  +D+AK++F+S
Sbjct: 201 GTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDS 260

Query: 393 II-LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------- 440
              +RD+V WN+LLAAY    +   A +L   MQ  G  P++ S+ S+I           
Sbjct: 261 SAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNN 320

Query: 441 ----------LGFLRN----------------GQMNEAKDMFLQMQSLGVQPNLITWTTL 474
                      GF ++                G M EA  +F  ++      + ++W ++
Sbjct: 321 GRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEF----KDRVSWNSI 376

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           ++GL+Q     +A+  F  M    +     + +  L +C+D+A+ + G+ IH   +++ L
Sbjct: 377 LTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGL 436

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
                + +SL+ MY+KCG I  A+R F+ +       +NA++ GYA HG    AL LF  
Sbjct: 437 ESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFL 496

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           ++ K +  D ITF  +L ACSH GLV +G +    M SD+ V P MEH+ C V+L  R G
Sbjct: 497 MEXKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSG 556

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L+EA  +I  MP  PD  +  + L  C      ELA  ++ HLL++EP+    YV LSN
Sbjct: 557 RLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSN 616

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLAL 774
            Y    RW+E ++V+ +MKE+G++K PG SWI++   +H F+A D SHP  ++IY  L +
Sbjct: 617 MYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLLEV 676

Query: 775 L 775
           L
Sbjct: 677 L 677



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/523 (24%), Positives = 231/523 (44%), Gaps = 61/523 (11%)

Query: 65  DLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVV 124
           D+L  M+   F++    +G +L+G  +    + GQQ+H+ I+K G  +A N Y  + L+ 
Sbjct: 85  DVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMG--YAENVYAGSALLD 142

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
            YAKC+ L+ A   F  +   N  SW A+I    + G  E A      M+++G   D+  
Sbjct: 143 MYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGT 202

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
              +L       +      +HG ++K G +    + ++LI  Y KCG L++A+++FD   
Sbjct: 203 YAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSA 262

Query: 245 A-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
             R++V WNS++  Y+     + A ++  +M   G EP   S TSI+SA  N +  + G+
Sbjct: 263 GIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGR 322

Query: 304 QAHAVAVINGMELDNVLGSSIINFY--SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ 361
             H + +  G E    + +++I+ Y  S  G +++A  +F  +  +D V+WN ++    Q
Sbjct: 323 SLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQ 382

Query: 362 SG----------------------------------------------------QSDVVV 369
           +G                                                    +S+  V
Sbjct: 383 TGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFV 442

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
           +SS++ MY+KC  I++A++ F        + WN L+  YA  G+   A  LF+ M+ + +
Sbjct: 443 SSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEXKKV 502

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAI 488
             + I++ +V+      G + +       M+S  GV P +  +   +    ++    EA 
Sbjct: 503 KMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAK 562

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
              +EM     KP TT     L AC    ++     + G+L+ 
Sbjct: 563 ALIEEM---PFKPDTTVWKTFLGACRSCGNIELACQVAGHLLE 602



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 16/213 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ++ LS+     +AV     M+     I    +  +L+ C        GQQIH   LK G 
Sbjct: 377 LTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYG- 435

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               NE+V + L+  Y+KC  ++ A R F      +  +W A++    + G    AL  F
Sbjct: 436 -LESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLF 494

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFG-------RAVHGYVLKVGFDGCVFVASSL 223
             M+   V  D+     VL AC  +G V  G        + +G   ++    C       
Sbjct: 495 FLMEXKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACA------ 548

Query: 224 IDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI 255
           +D+YG+ G LEEA+ + + M  + +   W + +
Sbjct: 549 VDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFL 581



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 42/226 (18%)

Query: 523 RAIHGYLIRHDLCLPTPIVT------SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           RA+   L+ H L +    +       ++++ Y KC  +  A  +FD  P ++   +N MI
Sbjct: 12  RALANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMI 71

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           +G+   G    +  + + ++  G + D  TF ++L   +           F GMF     
Sbjct: 72  AGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIA-----------FAGMF----- 115

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
                H G  V+             +I+ M    + +   +LL    K  + E A Y+S 
Sbjct: 116 -----HLGQQVH------------SIIIKMGYAENVYAGSALLDMYAKCEKLEDA-YLS- 156

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
             L +   N  ++ A+ N YA +G       + D M+++G + + G
Sbjct: 157 -FLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDG 201


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 182/563 (32%), Positives = 316/563 (56%), Gaps = 39/563 (6%)

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           I    + GD+  AR+VFD M  R+ V+WN+++    + G +  A R  ++       P+R
Sbjct: 23  ITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDM-----PSR 77

Query: 284 --VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVV 340
             +S  SI++       L  G  A A A        NV   ++++    ++G +EDA  +
Sbjct: 78  NVISWNSIIAG-----CLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSL 132

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F +M ER++V++                  +++VD  A+C  + +A+++F+++  R++V 
Sbjct: 133 FDQMPERNVVSY------------------TTMVDGLARCGEVASARELFDAMPTRNLVS 174

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           W  +++ Y D     EA +LF  M       N+++  ++I G+ + G +  A+ +F  ++
Sbjct: 175 WAAMISGYVDNNMLEEARKLFEAMP----EKNVVACTAMITGYCKEGDLQNARRLFDGIR 230

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
           +     ++I+W  +ISG   N  G EA   +  ML  GIKP   T+   L+AC+ +A LR
Sbjct: 231 A----KDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLR 286

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            GR+ H  +I+  L     I  +L+ MY+KCGN+ +++ VF    S+++  +N +I+ YA
Sbjct: 287 QGRSTHAVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYA 346

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            HG   + +ALF  ++  G+ P+ ITF ++L+AC HAG V+E L+LF  MFS + + P  
Sbjct: 347 QHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRA 406

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EH+ C+V++LSR G L++A   I  MP + + ++ G+LL         +L E  ++ L+ 
Sbjct: 407 EHYACIVDILSRAGQLEKACSYIKEMPSEAEKNVWGTLLCASQTHGNVQLGELAAKMLVL 466

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
            + ++ G YV LSN YAA+G W EV++VR  MKEKG++K PG SW +I +++H+FV  D 
Sbjct: 467 SDFESSGAYVMLSNIYAAAGMWGEVNRVRSQMKEKGVKKQPGHSWTEIADKVHMFVGGDA 526

Query: 761 SHPKTEEIYATLALLGMHVRLVS 783
           SHP+ + I + L  +  H+++V+
Sbjct: 527 SHPEMDMILSELRKISFHMQMVT 549



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 183/397 (46%), Gaps = 89/397 (22%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN    T +V   A+C  +  A  LF  +  +N+ SWAA+I              G+V  
Sbjct: 139 RNVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMIS-------------GYV-- 183

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
                  DN +L    K   A+                  +  V   +++I  Y K GDL
Sbjct: 184 -------DNNMLEEARKLFEAMP-----------------EKNVVACTAMITGYCKEGDL 219

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
           + AR++FDG+ A++V++WN++I GYV NGL EEA +++  M  EG++P + ++ ++L+A 
Sbjct: 220 QNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTAC 279

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           ++L  L +G+  HAV +   +E    + ++++  YSK G ++++E+VF  +  +DIV+WN
Sbjct: 280 SSLALLRQGRSTHAVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWN 339

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
            +IA+Y Q G+   V+A                                           
Sbjct: 340 TIIAAYAQHGRYQKVIA------------------------------------------- 356

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWT 472
                 LF++M+L G+ PN I++ S++      G+++E+  +F L      + P    + 
Sbjct: 357 ------LFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYA 410

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
            ++  L++     +A  + +EM     K    T+ CA
Sbjct: 411 CIVDILSRAGQLEKACSYIKEMPSEAEKNVWGTLLCA 447



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 184/391 (47%), Gaps = 37/391 (9%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SY   +  L++  ++  A +L   M  RN       +  ++ G V    +   +++   +
Sbjct: 143 SYTTMVDGLARCGEVASARELFDAMPTRNLVS----WAAMISGYVDNNMLEEARKLFEAM 198

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            +      +N    T ++  Y K   L  A RLF  +R K+V SW AII      GL E+
Sbjct: 199 PE------KNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEE 252

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A   ++ M  +G+ PD   L  +L AC +L  +  GR+ H  V+K   +  + + ++L+ 
Sbjct: 253 ATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAMLESSISICNALMT 312

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY KCG+++E+  VF  + ++++V+WN++I  Y Q+G  ++ I +F+EM L G+ P  ++
Sbjct: 313 MYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDIT 372

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLG------SSIINFYSKVGLLEDAEV 339
             S+LSA  +   +DE     ++ + + M     +       + I++  S+ G LE A  
Sbjct: 373 FLSMLSACGHAGRVDE-----SLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACS 427

Query: 340 VFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
               M  E +   W  L+ +    G         + ++ AK   + + +     ++L ++
Sbjct: 428 YIKEMPSEAEKNVWGTLLCASQTHGNVQ------LGELAAKMLVLSDFESSGAYVMLSNI 481

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
                    YA  G  GE +R+  QM+ +G+
Sbjct: 482 ---------YAAAGMWGEVNRVRSQMKEKGV 503


>gi|218190567|gb|EEC72994.1| hypothetical protein OsI_06907 [Oryza sativa Indica Group]
          Length = 711

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 203/690 (29%), Positives = 357/690 (51%), Gaps = 30/690 (4%)

Query: 93  RDMYT-GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWA 151
           R M+T G Q+H  ++K G       ++ + L+  Y++C  L+ +  +F  +  KN  SW 
Sbjct: 26  RQMFTQGTQLHGLLVKVG--CDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWT 83

Query: 152 AII---GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208
           A+I    L+ RV   E  L  F  M      P++     +   C     +  GR+VH   
Sbjct: 84  AMISGFALHNRV---EPCLHLFASMMLSSCKPNDITFATLFSVCTKHALLALGRSVHALQ 140

Query: 209 LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
           +++GF   V V+++L+ MY KCG +EEA+ +F  +  +++V+WN++I G  Q  L +  +
Sbjct: 141 MRMGFHSYVHVSNALLSMYAKCGCIEEAQFIFGCIACKDLVSWNAIIFGCSQYVLAKHCL 200

Query: 269 RVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME--LDNVLGSSIIN 326
            +  EM  + + P  +S   +LS+  +   ++EG+      + +G++  LD+   S +++
Sbjct: 201 DLLKEMERQHIVPDALSFLGVLSSCRHARLVEEGRHCFKTMIEHGIKPGLDHY--SCMVD 258

Query: 327 FYSKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDN 385
              + GLLE+A +++ +  +  + V W  L+ S    G  ++ +     +   K E    
Sbjct: 259 LLGRAGLLEEAWDLIQTMSIPPNAVIWGSLLGSCRVHG--NISIGIQAAEHRLKLEPGKG 316

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
                 SI+          +++ AD     + ++L   +   G    +   +S+I  + R
Sbjct: 317 ETSTDQSIL-------AAAMSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSR 369

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
             Q+  +  +F  M +     N ++WT +ISG   ++     +  F  M  +  KP+  T
Sbjct: 370 CSQLESSYLVFQTMPT----KNTVSWTAMISGFALHNRVEPCLHLFASMRLSSCKPNDIT 425

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
                S CT+ A L  G+++H   +R        +  +L+ MYAKCG I +A+ +F    
Sbjct: 426 FATLFSVCTNHALLALGKSVHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGFIA 485

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            K+L  +NAMI G + +GLA   L L K ++++ I PD+++F  +L++C HA LV EG  
Sbjct: 486 CKDLVSWNAMIFGCSQYGLAKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLVEEGRH 545

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
            F  M  +H +KP ++H+ C+V+LL R G L+EA  +I TM   P+A I GSLL +C   
Sbjct: 546 CFKTMI-EHGIKPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLLGSCRVH 604

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
               +    +EH L+LEP     ++ L+N YA  G W++V++VR  MK +GL+ N GCSW
Sbjct: 605 GNISIGIQAAEHRLKLEPGCAATHIQLANLYATIGCWSDVARVRMAMKARGLKTNIGCSW 664

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLALL 775
           I++G++++ F A +RS  K+ ++   LA+L
Sbjct: 665 IEVGDKVYSFTAENRS--KSHQVNNVLAIL 692



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/511 (25%), Positives = 242/511 (47%), Gaps = 38/511 (7%)

Query: 171 VEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           +E+   G  S D  +L   + +C        G  +HG ++KVG D  VF+ SSLI +Y +
Sbjct: 1   MELHRKGETSTDQSILAAAMSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSR 60

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           C  LE +  VF  M  +N V+W +MI G+  +   E  + +F  M L   +P  ++  ++
Sbjct: 61  CSQLESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMMLSSCKPNDITFATL 120

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
            S       L  G+  HA+ +  G      + +++++ Y+K G +E+A+ +F  +  +D+
Sbjct: 121 FSVCTKHALLALGRSVHALQMRMGFHSYVHVSNALLSMYAKCGCIEEAQFIFGCIACKDL 180

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
           V+WN +I      G S  V+A   +D+  + ER           I+ D + +  +L++  
Sbjct: 181 VSWNAIIF-----GCSQYVLAKHCLDLLKEMERQH---------IVPDALSFLGVLSSCR 226

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
                 E    F  M   GI P +  ++ ++    R G + EA D+   +Q++ + PN +
Sbjct: 227 HARLVEEGRHCFKTMIEHGIKPGLDHYSCMVDLLGRAGLLEEAWDL---IQTMSIPPNAV 283

Query: 470 TWTTLISGLTQNSCGNEAILF----FQEMLETGIKPSTT---TITCALSACTDVASLRNG 522
            W +L+     +  GN +I       +  LE G   ++T    +  A+S+C D      G
Sbjct: 284 IWGSLLGSCRVH--GNISIGIQAAEHRLKLEPGKGETSTDQSILAAAMSSCADRQMFTQG 341

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
             +HG L++        I +SL+ +Y++C  +  +  VF   P+K    + AMISG+A+H
Sbjct: 342 TQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALH 401

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG-----LELFVGMFSDHQVK 637
                 L LF +++     P+ ITF  + + C++  L+  G     L++ +G  S   V 
Sbjct: 402 NRVEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALGKSVHALQMRMGFHSYVHVS 461

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
            ++      +++ ++CG +DEA  +   + C
Sbjct: 462 NAL------LSMYAKCGCIDEAQSIFGFIAC 486


>gi|357116106|ref|XP_003559825.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Brachypodium distachyon]
          Length = 739

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 222/705 (31%), Positives = 356/705 (50%), Gaps = 59/705 (8%)

Query: 101 IHARILKNG-DFFARNEYVETKLVVFYAK-CDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           +H   + +G D F+   +V   L   YAK   +   A+++F   R ++V S+  I+    
Sbjct: 59  LHGLAIASGLDAFS---FVTNSLAARYAKSASSFPSAAKVFHTARARDVSSYNTILSALP 115

Query: 159 RVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALG-----WVGFGRAVHGYVLKVG 212
             G   +AL     M   G V PD   L   L    + G     W+   R +H    + G
Sbjct: 116 DRG---EALAFAAWMLRSGDVRPDAVTLTVALSLAASRGEADGVWIV--RQLHALASRSG 170

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG-LNEEAIRVF 271
               VFV ++L+  Y +   L  AR+VFD M AR++V+WN+MI G  Q+G    E I VF
Sbjct: 171 LVADVFVGNALVTAYSRGALLGAARRVFDEMPARDLVSWNAMICGLAQDGDCPTEVILVF 230

Query: 272 YEMTLEG---VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328
             +  +G   V P R+SV S++ A  +   ++ G+Q H+  V  G+E    +G+ ++  Y
Sbjct: 231 LRLLKDGGAAVRPDRISVCSVIPACGSEGKIELGRQVHSFTVKLGVEGKVSIGNVLVAMY 290

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388
            K G    A  +   M ERD+++W   I+     G+ D +                   +
Sbjct: 291 YKSGAAGCARKLLKSMDERDVISWTTAIS---MDGEEDAI-------------------E 328

Query: 389 VFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGF 443
           +FN +    +  + V +  L++A A  G      ++ + + L+ G+S    + NS+I  +
Sbjct: 329 LFNGMRQDGVPPNEVTFVALMSALA-AGCPARYGQMIHTVCLKTGVSDEAAAANSLITMY 387

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            +  +M++A+ +F +M     +P +I W  LISG  QN   NEA+  F  M+   ++P+ 
Sbjct: 388 AKLRRMDDARTVFDRMP----RPEIIAWNALISGYAQNELCNEALQVFSCMVRC-LRPNE 442

Query: 504 TTITCALSACTDV--ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
           TT    LSA T V   S+  G   H   ++  L +   +  +L+DMYAK G++ ++++ F
Sbjct: 443 TTFASVLSAVTAVETVSMAYGEMYHCQSLKLGLKVSEYVSGALIDMYAKRGSLEESRKAF 502

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           D++  + L  + A+IS +A HG     + LF ++   G+ PD +   ++L AC H+G VN
Sbjct: 503 DVTVHRSLIAWTAIISAHAKHGNYDTVMNLFDDMVCSGVAPDGVVLLSVLTACRHSGAVN 562

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
            G E+F  M ++H V+P  EH+ CV+++L R G L+EA  ++L MP  P    + SLL  
Sbjct: 563 TGREIFDSMPAEHHVEPWPEHYACVIDMLGRAGRLEEAEELMLQMPTGPSVSALQSLLGA 622

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C     T +AE ++  L + EP   G YV LSN YA  G W  V++VR  M+EKG+RK  
Sbjct: 623 CRIHGNTSIAERVAGILTETEPTESGAYVLLSNIYAEKGDWGGVAKVRREMREKGVRKEI 682

Query: 742 GCSWIQIGE----ELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
           G SW+  G      LH F + D +HP TEEIY     LG+  +L+
Sbjct: 683 GFSWVDFGAGESLHLHKFSSDDTTHPCTEEIYRVAEGLGLETKLL 727



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 91/205 (44%), Gaps = 18/205 (8%)

Query: 95  MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII 154
           M  G+  H + LK G     +EYV   L+  YAK  +L+ + + F     +++ +W AII
Sbjct: 460 MAYGEMYHCQSLKLG--LKVSEYVSGALIDMYAKRGSLEESRKAFDVTVHRSLIAWTAII 517

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR-------AVHGY 207
             + + G  +  +  F +M   GV+PD  VL +VL AC   G V  GR       A H  
Sbjct: 518 SAHAKHGNYDTVMNLFDDMVCSGVAPDGVVLLSVLTACRHSGAVNTGREIFDSMPAEHHV 577

Query: 208 VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEE 266
                   CV      IDM G+ G LEEA ++   M    +V A  S++     +G    
Sbjct: 578 EPWPEHYACV------IDMLGRAGRLEEAEELMLQMPTGPSVSALQSLLGACRIHGNTSI 631

Query: 267 AIRVFYEMTLEGVEPTRVSVTSILS 291
           A RV   +T    EPT      +LS
Sbjct: 632 AERVAGILT--ETEPTESGAYVLLS 654


>gi|297839569|ref|XP_002887666.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333507|gb|EFH63925.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score =  326 bits (836), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 215/730 (29%), Positives = 358/730 (49%), Gaps = 112/730 (15%)

Query: 69  EMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK 128
           E+ CR +      Y  LLQ C  +      +Q +   LK G F +    V   L+  Y++
Sbjct: 2   EVDCRRY------YVRLLQSCSNRNRETLWRQTNGLFLKKG-FISSIVIVANHLLQIYSR 54

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF-VLPN 187
              + +A  LF  +  +N FSW  +I              G++   + G S   F ++P 
Sbjct: 55  SGKMGIARNLFDEMPERNYFSWNTMIE-------------GYMNSGDKGTSLRFFDMMPE 101

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
                             GY   V   G           + K G+L  AR++FD M  ++
Sbjct: 102 R----------------DGYSWNVVISG-----------FAKAGELSVARRLFDAMPEKD 134

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           VV  NS++ GY+ NG +EEA+R+F E+         +++T++L A A L+AL  GKQ HA
Sbjct: 135 VVTLNSLLHGYILNGYSEEALRLFKELKFSA---DAITLTTVLKACAELEALKRGKQIHA 191

Query: 308 VAVINGMELDNVLGSSIINFYSKVGLLE-------------------------------D 336
             +I G+E D+ + SS++N Y+K G L                                +
Sbjct: 192 QILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIGEPDDHSLSTLISGYANCGRVNE 251

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQS----------------DVVVASSIVDMYAKC 380
           +  +F R   R ++ WN +I+ Y+ +                   D    +++++     
Sbjct: 252 SRRLFDRKSNRCVILWNSMISGYIANNMKFEALVLFNEMRNETWEDSRTLAAVINACIGL 311

Query: 381 ERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
             ++  KQ+        ++ D+V+ +TLL  Y+  G   EA +LF +++    S + I  
Sbjct: 312 GFLETGKQMHCHACKFGLVDDIVVASTLLDMYSKCGSPMEACKLFSEVE----SYDTILL 367

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           NS+I  +   G++++AK +F ++++     +LI+W ++ +G +QN C  E + +F +M +
Sbjct: 368 NSMIKVYFSCGRIDDAKRVFERIEN----KSLISWNSMTNGFSQNGCPVETLEYFSQMHK 423

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
             +     +++  +SAC  ++SL  G  +        L     + +SL+D+Y KCG++  
Sbjct: 424 LDLPTDEVSLSSVISACASISSLGLGEQVFARATIVGLDSDQIVSSSLIDLYCKCGSVEN 483

Query: 557 AKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
            +RVFD +  S E+P +N+MISGYA +G   EA+ LFK +   GI P  ITF  +L AC+
Sbjct: 484 GRRVFDTMVKSDEVP-WNSMISGYATNGHGFEAIDLFKKMSIAGIRPTQITFMVVLTACN 542

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           + GLV EG  LF  M  DH   P  EHF C+V+LL+R G ++EA+ ++  MP D DA + 
Sbjct: 543 YCGLVEEGRLLFEAMKLDHGFVPDKEHFSCMVDLLARAGYVEEAIDLVEEMPFDADASMW 602

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
            S+L  CV +    + + ++E +++LEP+N   YV LS  +A SG W   + VR +M+E 
Sbjct: 603 SSVLRGCVANGYKAMGKKVAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMREN 662

Query: 736 GLRKNPGCSW 745
            + KNPG SW
Sbjct: 663 NVSKNPGSSW 672


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  326 bits (836), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 197/645 (30%), Positives = 324/645 (50%), Gaps = 92/645 (14%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG---VEPTRVS 285
           K G L  AR++FD M  ++ ++W ++I GYV    + EA+ +F  M +E    ++P  +S
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 286 ---------------------------VTSILSASANLDALDE-GKQAHAVAVINGMELD 317
                                      V S+   SA LD   + GK      V + M + 
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 318 NVLG-SSIINFYSKVGLLEDAEVVFSRM----VERDIVTWNLLIASYVQSGQSDV----- 367
           NV+  ++II    + G  ++A V FS M    VE D  T+ + + +   SG  +      
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 368 ------------VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                        VA+++  MY KC +++    +F  + +RDVV W T++     +G+  
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300

Query: 416 EASRLFYQMQLEGISPN---------------IISW--------------------NSVI 440
            A + F +M+   +SPN                I W                    NS++
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             + + GQ+  +  +F +M     + ++++W+T+I+G  Q    +EA      M   G K
Sbjct: 361 TMYAKCGQLTSSSVIFHEM----TRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPK 416

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P+   +   LSAC ++A L +G+ +H Y++   L     ++++L++MY KCG+I +A R+
Sbjct: 417 PTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRI 476

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           FD + + ++  + AMI+GYA HG + E + LF+ + + G+ PDS+TF  +L+ACSHAGLV
Sbjct: 477 FDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLV 536

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
           + G   F  M   +Q+ PS EH+GC+++LL R G L +A  +I  MP   D  +  +LL 
Sbjct: 537 DLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLR 596

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C    + E     +E +LQLEP+  G ++ L+N YA+ G+W E + +R +MK KG+ K 
Sbjct: 597 ACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKE 656

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           PG SWI++ + +  FVA DRSHP+ E+IY  L LL     L   V
Sbjct: 657 PGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLLASRTELADCV 701



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 213/426 (50%), Gaps = 20/426 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+ L +    +EA+   +EM     +     +   L+ C     +  G++IHA+ +K G 
Sbjct: 189 ITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKG- 247

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  + +V   L   Y KC  L+    LF ++ +++V SW  II    ++G  E A+  F
Sbjct: 248 -FDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAF 306

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           + M+E  VSP+ +    V+  C  L  + +G  +H  +L +G    + V +S++ MY KC
Sbjct: 307 IRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKC 366

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L  +  +F  M  R++V+W+++I GY Q G   EA  +   M +EG +PT  ++ S+L
Sbjct: 367 GQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVL 426

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           SA  N+  L+ GKQ HA  +  G+E   ++ S++IN Y K G +E+A  +F      DIV
Sbjct: 427 SACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIV 486

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           +W  +I  Y + G S       ++D++ K  R+          +  D V +  +L+A + 
Sbjct: 487 SWTAMINGYAEHGYS-----REVIDLFEKIPRVG---------LRPDSVTFIGVLSACSH 532

Query: 411 LGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
            G        F  M  +  ISP+   +  +I    R G++++A+ M   ++++    + +
Sbjct: 533 AGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHM---IEAMPFHRDDV 589

Query: 470 TWTTLI 475
            W+TL+
Sbjct: 590 VWSTLL 595



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 139/329 (42%), Gaps = 50/329 (15%)

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           V ++  +D+       DN  Q  + I   D+   N  L      G  G A R+F +M   
Sbjct: 19  VASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMS-- 76

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
               + ISW ++I G++       A D                              +EA
Sbjct: 77  --QKDEISWTTLISGYV------NAND-----------------------------SSEA 99

Query: 488 ILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           +L F+ M +E+G++     ++ A  AC   + +  G  +HGY ++  L     + ++L+D
Sbjct: 100 LLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLD 159

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MY K G I + +RVF   P + +  + A+I+G    G   EAL  F  + +  ++ DS T
Sbjct: 160 MYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYT 219

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS----RCGNLDEALRV 662
           F   L AC+ +G +N G E+         +K   +    V N L+    +CG L+  L +
Sbjct: 220 FAIALKACADSGALNYGREIHA-----QAMKKGFDVSSFVANTLATMYNKCGKLEYGLTL 274

Query: 663 ILTMPCDPDAHIIGSLLSTCVKSNETELA 691
              M    D     ++++T V+  + E A
Sbjct: 275 FEKMSM-RDVVSWTTIITTLVQMGQEECA 302


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 198/628 (31%), Positives = 305/628 (48%), Gaps = 76/628 (12%)

Query: 221 SSLIDMYGKCGDLEEARKVFDG--MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           ++LI  Y   G+LE  R++F+G  +  R+ V +N+MI GY  NG    A+ +F  M  + 
Sbjct: 83  TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDD 142

Query: 279 VEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGM----------------------- 314
             P   + TS+LSA       ++   Q H   V  GM                       
Sbjct: 143 FRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELG 202

Query: 315 -----------------ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
                            + D +  +++I  Y +   L  A  VF  MVE     WN +I+
Sbjct: 203 ISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMIS 262

Query: 358 SYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV-- 398
            YV  G                 Q D +  ++I+   A        KQV   I+  ++  
Sbjct: 263 GYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNP 322

Query: 399 ------VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
                  + N L+  Y    +  EA ++FY M +     NII+WN+++ G++  G+M EA
Sbjct: 323 NHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR----NIITWNAILSGYVNAGRMEEA 378

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           K  F +M       NL+T T +ISGL QN  G+E +  F++M   G +P       AL+A
Sbjct: 379 KSFFEEMPV----KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTA 434

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C+ + +L NGR +H  L+         +  +++ MYAKCG +  A+ VF   PS +L  +
Sbjct: 435 CSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSW 494

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
           N+MI+    HG  V+A+ LF  + ++G+ PD ITF  +L ACSHAGLV +G   F  M  
Sbjct: 495 NSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLE 554

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
            + + P  +H+  +V+L  R G    A  VI +MP  P A +  +LL+ C      +L  
Sbjct: 555 SYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGI 614

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
             +E L +L P N G YV LSN YA  GRWNEV++VR +M+++ +RK P CSWI++  ++
Sbjct: 615 EAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKV 674

Query: 753 HVFVACDRSHPKTEEIYATLALLGMHVR 780
           HVF+  D  HP+   +Y  L  LG+ ++
Sbjct: 675 HVFMVDDDVHPEVLSVYRYLEQLGLEMK 702



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 151/603 (25%), Positives = 259/603 (42%), Gaps = 137/603 (22%)

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLF--CRLRVKNVFSWAAIIGLNCRVGLS 163
           + N D  AR     T L+  Y     L++   +F    L +++   + A+I      G  
Sbjct: 74  IPNPDAIAR-----TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDG 128

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKA----------CGALGWVGFGRAVHGYVLKVGF 213
             AL  F  M+ D   PD+F   +VL A          CG +         H  V+K G 
Sbjct: 129 HSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQM---------HCAVVKTGM 179

Query: 214 DGCVF--VASSLIDMYGK--------CGDLEEARKVFDGMIARNVVAWNSMIVGYVQN-- 261
            GCV   V ++L+ +Y K        C  +  ARK+FD M  R+ + W +MI GYV+N  
Sbjct: 180 -GCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDD 238

Query: 262 -----------------------------GLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
                                        G  +EA+ +  +M   G++   ++ T+I+SA
Sbjct: 239 LNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISA 298

Query: 293 SANLDALDEGKQAHAVAVINGMELDN----VLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
            AN+ +   GKQ HA  + N +  ++     + +++I  Y K   +++A  +F  M  R+
Sbjct: 299 CANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRN 358

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           I+TWN +++ YV +G                  R++ AK  F  + +++++    +++  
Sbjct: 359 IITWNAILSGYVNAG------------------RMEEAKSFFEEMPVKNLLTLTVMISGL 400

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSV-----ILGFLRNGQ--------------- 448
           A  G   E  +LF QM+L+G  P   ++        +LG L NG+               
Sbjct: 401 AQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSL 460

Query: 449 ---------------MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
                          +  A+ +F+ M S+    +L++W ++I+ L Q+  G +AI  F +
Sbjct: 461 SVGNAMISMYAKCGVVEAAESVFVTMPSV----DLVSWNSMIAALGQHGHGVKAIELFDQ 516

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP-IVTSLVDMYAKCG 552
           ML+ G+ P   T    L+AC+    +  GR     ++      P       +VD++ + G
Sbjct: 517 MLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAG 576

Query: 553 NIHQAKRVFDISPSKE-LPVYNAMISGYAMHG---LAVEAL-ALFKNLQQKGIDPDSITF 607
               A+ V D  PSK   PV+ A+++G  +HG   L +EA   LFK + Q   D   +  
Sbjct: 577 MFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQN--DGTYVLL 634

Query: 608 TNI 610
           +NI
Sbjct: 635 SNI 637



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 202/450 (44%), Gaps = 63/450 (14%)

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEY-- 117
            +EA+ L  +M+    Q     Y  ++  C        G+Q+HA ILKN +    + +  
Sbjct: 270 FQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKN-ELNPNHSFCL 328

Query: 118 -VETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA---------- 166
            V   L+  Y K + +D A ++F  + V+N+ +W AI+      G  E+A          
Sbjct: 329 SVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVK 388

Query: 167 ---------------------LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
                                L  F +M+ DG  P +F     L AC  LG +  GR +H
Sbjct: 389 NLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLH 448

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
             ++ +G++  + V +++I MY KCG +E A  VF  M + ++V+WNSMI    Q+G   
Sbjct: 449 AQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGV 508

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSSI 324
           +AI +F +M  EGV P R++  ++L+A ++   +++G+   +++    G+       + +
Sbjct: 509 KAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARM 568

Query: 325 INFYSKVGLLEDAEVVFSRMVER-DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
           ++ + + G+   A +V   M  +     W  L+A     G  D+               I
Sbjct: 569 VDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDL--------------GI 614

Query: 384 DNAKQVFNSIILRD---VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN-IISW--- 436
           + A+Q+F  +   D   V+L N     YAD+GR  E +++   M+ + +      SW   
Sbjct: 615 EAAEQLFKLMPQNDGTYVLLSNI----YADVGRWNEVAKVRKLMRDQAVRKEPACSWIEV 670

Query: 437 -NSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
            N V +  + +    E   ++  ++ LG++
Sbjct: 671 ENKVHVFMVDDDVHPEVLSVYRYLEQLGLE 700



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 147/315 (46%), Gaps = 33/315 (10%)

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           +++MY K   +  A+Q+F  I   D +   TL+ AY  LG       +F    L     +
Sbjct: 54  LLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPL--YMRD 111

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL-----TQNSCGNEA 487
            + +N++I G+  NG  + A ++F  M+    +P+  T+T+++S L      +  CG   
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ-- 169

Query: 488 ILFFQEMLETGIKPSTTTITCALSAC---------TDVASLRNGRAIHGYLIRHDLCLPT 538
                 +++TG+   ++++  AL +             +++ + R +   + + D    T
Sbjct: 170 --MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWT 227

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            ++T     Y +  +++ A+ VF+         +NAMISGY   G   EAL L + ++  
Sbjct: 228 TMITG----YVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFL 283

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC------VVNLLSR 652
           GI  D IT+T I++AC++ G    G ++   +  + ++ P+  H  C      ++ L  +
Sbjct: 284 GIQFDDITYTTIISACANVGSFQMGKQVHAYILKN-ELNPN--HSFCLSVSNALITLYCK 340

Query: 653 CGNLDEALRVILTMP 667
              +DEA ++   MP
Sbjct: 341 NNKVDEARKIFYAMP 355



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 4/209 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS L++     E + L  +M+   F+     +   L  C     +  G+Q+HA+++  G 
Sbjct: 397 ISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLG- 455

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            +  +  V   ++  YAKC  ++ A  +F  +   ++ SW ++I    + G   KA+  F
Sbjct: 456 -YESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELF 514

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK-VGFDGCVFVASSLIDMYGK 229
            +M ++GV PD      VL AC   G V  GR     +L+  G   C    + ++D++ +
Sbjct: 515 DQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCR 574

Query: 230 CGDLEEARKVFDGMIAR-NVVAWNSMIVG 257
            G    AR V D M ++     W +++ G
Sbjct: 575 AGMFSYARIVIDSMPSKPGAPVWEALLAG 603



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 16/139 (11%)

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
            M+ +G KP    +   L      ++L   R +   +   D    T ++T+    Y   G
Sbjct: 38  HMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITA----YCALG 93

Query: 553 NIHQAKRVFDISP--SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           N+   + +F+ +P   ++   YNAMI+GYA +G    AL LF+ +++    PD  TFT++
Sbjct: 94  NLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSV 153

Query: 611 LNACSHAGLVNEGLELFVG 629
           L+A          L LFVG
Sbjct: 154 LSA----------LVLFVG 162


>gi|255583926|ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527557|gb|EEF29678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 679

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 209/693 (30%), Positives = 343/693 (49%), Gaps = 74/693 (10%)

Query: 10  PNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTE 69
           P  KF    P KP+  S++                 S+   +   ++    REA+    +
Sbjct: 23  PTKKFLSHSPPKPISQSRSQ---------------ASWIESLRFNTRSNLFREAISTYVD 67

Query: 70  MKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129
           M           +  +L+     +D+  G+QIHA ++K G + + +  +   LV FY KC
Sbjct: 68  MILSGVSPDSYAFPVVLKAVTGLQDLNLGKQIHAHVVKYG-YESSSVAIANSLVNFYGKC 126

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
             LD   ++F R+  +++ SW ++I   CR    E AL  F  M  + + P +F L + +
Sbjct: 127 SELDDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDLEPSSFTLVSPV 186

Query: 190 KACGALG---WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
            AC  L     +  G+ +HGY  + G     F  ++L+ MY   G L++A+ +F     R
Sbjct: 187 IACSNLRKHEGLRLGKQIHGYCFRNG-HWSTFTNNALMTMYANLGRLDDAKFLFKLFEDR 245

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           N+++WN+MI  + QN    EA+     M LEGV+P  V++ S+L A + L+ L  GK+ H
Sbjct: 246 NLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPACSYLEMLGTGKEIH 305

Query: 307 AVAVINGMELDN-VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           A A+ +G  ++N  +GS++++ Y   G +     VF  ++ER    WN +IA Y Q+   
Sbjct: 306 AYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERKTGLWNAMIAGYAQNEHD 365

Query: 366 D---------VVVA---------SSIVDMYAKCERIDNAKQVFNSIILRDV----VLWNT 403
           +         V VA         +SIV   A+CE   + + +   +I RD+     + N 
Sbjct: 366 EKALMLFIEMVAVAGLCPNTTTMASIVPASARCESFFSKESIHGYVIKRDLERDRYVQNA 425

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           L+  Y+ + +   +  +F  M++     +I+SWN++I G++ +G  N+A  M  +MQ   
Sbjct: 426 LMDMYSRMRKMEISKTIFDSMEVR----DIVSWNTMITGYVISGCYNDALLMLHEMQH-- 479

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
                                NE I       +   KP++ T+   L  C  +A+L  G+
Sbjct: 480 --------------------ANEGINKHDGDKQACFKPNSITLMTVLPGCASLAALAKGK 519

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
            IH Y +R+ L     + ++LVDMYAKCG ++ ++RVFD  P K +  +N ++  Y MHG
Sbjct: 520 EIHAYAVRNALASEVTVGSALVDMYAKCGCLNLSRRVFDQMPIKNVITWNVIVMAYGMHG 579

Query: 584 LAVEALALFKNLQQKG-----IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
              EAL LFK++  KG     + P  +T   IL ACSH+G+V+EGL+LF  M  DH ++P
Sbjct: 580 NGEEALELFKDMVAKGDNVGEVKPTEVTMIAILAACSHSGMVDEGLKLFHRMKDDHGIEP 639

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
             +H+ CV +LL R G +++A   I TMP D D
Sbjct: 640 GPDHYACVADLLGRAGKVEQAYDFINTMPSDFD 672


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 216/724 (29%), Positives = 353/724 (48%), Gaps = 98/724 (13%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
           Q+  R+LK+G   + + YV + LV  +A+   LD A  ++  L+ +N  +   +I    +
Sbjct: 299 QLFVRVLKSG--CSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVK 356

Query: 160 VGLSEKALIGFVEMQEDG-VSPDNFV--LPNVLKACGALGWVGFGRAVHGYVLKVG-FDG 215
               E A   F+  ++   V+ D +V  L  + +   A   +  GR VH +VL+ G    
Sbjct: 357 QQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYR 416

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            + V++ L++MY KCG +++A +VF  M AR+ ++WN++I    QNG  E A+  +  M 
Sbjct: 417 KIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMR 476

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
              + P+  +  S LS+ A L  L  G+Q H                             
Sbjct: 477 QNSIGPSNFAAISGLSSCAGLGLLAAGQQLHC---------------------------- 508

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
                       D V W L +         D  V++++V MY +C R+    ++FNS+  
Sbjct: 509 ------------DAVKWGLYL---------DTSVSNALVKMYGECGRMSECWEIFNSMSA 547

Query: 396 RDVVLWNTLLAAYADLGRS-GEASRLFYQMQLEGISPNIISW------------------ 436
            DVV WN+++   A       E+ ++F  M   G+ PN +++                  
Sbjct: 548 HDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQ 607

Query: 437 -----------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
                            N+++  + ++G ++  + +F +M     + + I+W ++ISG  
Sbjct: 608 IHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSG---RRDAISWNSMISGYI 664

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
            N    EA+     M+ +       T +  L+AC  VA+L  G  +H + +R  L     
Sbjct: 665 YNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVV 724

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           + ++LVDMY+KCG I  A +VF     K    +N+MISGYA HGL  +AL +F+ +Q+ G
Sbjct: 725 VESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESG 784

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
             PD +TF ++L+ACSHAGLV  GL+ F  +  D+ + P +EH+ CV++LL R G LD+ 
Sbjct: 785 ESPDHVTFVSVLSACSHAGLVERGLDYF-ELMEDYGILPRIEHYSCVIDLLGRAGELDKI 843

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSN---ETELAEYISEHLLQLEPDNPGNYVALSNAY 716
              +  MP  P+  I  ++L  C +S    + +L    S  LL+LEP NP NYV  S  +
Sbjct: 844 QEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSKFH 903

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLG 776
           AA GRW + ++ R  MK   ++K  G SW+ + + +H F+A DRSHP T+EIY  L  L 
Sbjct: 904 AAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYEKLNFLI 963

Query: 777 MHVR 780
             +R
Sbjct: 964 QKIR 967



 Score =  192 bits (487), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 170/676 (25%), Positives = 302/676 (44%), Gaps = 119/676 (17%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           + +H  ++K G     + ++   LV  YAK   LD A R+F  +  +N  SW  +I  + 
Sbjct: 85  ESLHLEVVKRG--LTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHV 142

Query: 159 RVGLSEKALIGFVEMQED--GVSPDNFVLPNVLKACGALG--WVGFGRAVHGYVLKVGFD 214
             GL E A   F  M  +  G  P +F   +VL+AC   G   +GF   VHG V K  F 
Sbjct: 143 LSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFT 202

Query: 215 GCVFVASSLIDMYGKC--GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
               V ++LI MYG C  G    A++VFD    R+++ WN+++  Y + G       +F 
Sbjct: 203 SNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFR 262

Query: 273 EMTLE--GVE--PTRVSVTSILSA----SANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
            M  +  G+E  PT  +  S+++A    S +L  LD   Q     + +G   D  +GS++
Sbjct: 263 AMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLD---QLFVRVLKSGCSSDLYVGSAL 319

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------------ 366
           ++ +++ G+L++A+ ++  + ER+ VT N LIA  V+    +                  
Sbjct: 320 VSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVD 379

Query: 367 --VVVASSI------------------------------------VDMYAKCERIDNAKQ 388
             VV+ S+I                                    V+MYAKC  ID A +
Sbjct: 380 TYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACR 439

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP----------------- 431
           VF  +  RD + WNT++ A    G    A   +  M+   I P                 
Sbjct: 440 VFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGL 499

Query: 432 ---------NIISW---------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
                    + + W         N+++  +   G+M+E  ++F  M +     ++++W +
Sbjct: 500 LAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSA----HDVVSWNS 555

Query: 474 LISGLTQNSCG-NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           ++  +  +     E++  F  M+++G+ P+  T    L+A T ++ L  G+ IH  +++H
Sbjct: 556 IMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKH 615

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALAL 591
            +     +  +L+  YAK G++   +R+F  +S  ++   +N+MISGY  +G   EA+  
Sbjct: 616 GVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDC 675

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV-GMFSDHQVKPSMEHFGCVVNLL 650
              +       D  TF+ +LNAC+    +  G+E+   G+ S  +    +E    +V++ 
Sbjct: 676 VCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVE--SALVDMY 733

Query: 651 SRCGNLDEALRVILTM 666
           S+CG +D A +V  +M
Sbjct: 734 SKCGRIDYASKVFHSM 749


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 205/702 (29%), Positives = 343/702 (48%), Gaps = 85/702 (12%)

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF- 200
           LR+++ F W ++        L  +AL+ +  M   GVSPD+   P  L A  A       
Sbjct: 34  LRLRSAFLWNSLSRALSSASLPTEALLVYNHMLRSGVSPDDRTFPFALHAAAAAAQAHPA 93

Query: 201 -GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            G  +H   L+ G    VF  ++L+  Y  CG   +AR+VFD M AR+VV+WNS++  ++
Sbjct: 94  KGLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFL 153

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
            N + ++A +    M   GV     S+ S++ A         G   H + +  G++    
Sbjct: 154 ANKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVN 213

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------- 363
           LG+++++ Y K G +E +  VF  M ER+ V+WN  I  ++ +G                
Sbjct: 214 LGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERG 273

Query: 364 ------------------------------------QSDVVVASSIVDMYAKCERIDNAK 387
                                               + D+ VA+S+VDMYAK   ++ A 
Sbjct: 274 FMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKAC 333

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LG 442
            VF  I +R+VV WN ++A     G   EA  L  +MQ +G  PN I+  +++     + 
Sbjct: 334 AVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMA 393

Query: 443 FLRNGQM-----------------NEAKDMFLQMQSLGVQPNL--------ITWTTLISG 477
            L+ G+                  N   DM+ +   L +  ++        +++ TLI G
Sbjct: 394 SLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFDLSEKDDVSYNTLILG 453

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
            +Q+    E++  F+++   GI+    +   AL+ACT+++S + G+ IHG L+R  L   
Sbjct: 454 YSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNH 513

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             +  +L+ +Y K G +  A ++F+    K++  +N MI GY MHG    A  LF  ++ 
Sbjct: 514 PFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMKD 573

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
            G+  D +++  +L+ CSH GLV  G + F  M +   ++P   H+ C+V+LL R G L 
Sbjct: 574 HGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLA-QNLEPQQMHYACMVDLLGRSGQLT 632

Query: 658 EALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717
           E++ +IL MP   ++ + G+LL  C      ELA+Y ++HL +L+P++ G Y  L N YA
Sbjct: 633 ESVEIILDMPFHANSDVWGALLGACRIHGNIELAQYAADHLFELKPEHSGYYSVLRNMYA 692

Query: 718 ASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
            +GRWNE  ++R +MK + ++KNP  SW+Q G +L  F+  D
Sbjct: 693 EAGRWNEAHKIRTLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 734



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 137/528 (25%), Positives = 229/528 (43%), Gaps = 97/528 (18%)

Query: 227 YGKCGDLEEARKVF--DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT-- 282
           Y    DL  +R +     +  R+   WNS+        L  EA+ V+  M   GV P   
Sbjct: 16  YAALSDLASSRLLLFHHPLRLRSAFLWNSLSRALSSASLPTEALLVYNHMLRSGVSPDDR 75

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
                   +A+A      +G + HA A+ +G   D   G++++ FY+  G   DA  VF 
Sbjct: 76  TFPFALHAAAAAAQAHPAKGLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFD 135

Query: 343 RMVERDIVTWNLLIASYVQSGQSD------------------------------------ 366
            M  RD+V+WN L++S++ +   D                                    
Sbjct: 136 EMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGF 195

Query: 367 ----------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
                           V + +++VDMY K   ++ + +VF  +  R+ V WN+ +  + +
Sbjct: 196 GLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLN 255

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQ----------------- 448
            G  G+   LF  M   G  P  I+ +S++     LG+   G+                 
Sbjct: 256 AGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFV 315

Query: 449 MNEAKDMFLQMQSLGVQ---------PNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
            N   DM+ +  SL             N+++W  +I+ L QN   +EA     +M + G 
Sbjct: 316 ANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGE 375

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
            P++ T+   L AC+ +ASL+ G+ IH + IR  L     I  +L+DMYAKCG +  A+ 
Sbjct: 376 CPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQS 435

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           +FD+S   ++  YN +I GY+    + E+L LFK L   GI+ D+I+F   L AC++   
Sbjct: 436 IFDLSEKDDVS-YNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSS 494

Query: 620 VNEGLE----LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
             +G E    L   + S+H   P + +   ++ L ++ G LD A ++ 
Sbjct: 495 FKQGKEIHGVLVRRLLSNH---PFLAN--TLLGLYTKGGMLDTASKIF 537



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 133/275 (48%), Gaps = 4/275 (1%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL  C     + TG+QIHA  ++ G  F  + ++   L+  YAKC  L +A  +F  L  
Sbjct: 385 LLPACSRMASLKTGKQIHAWSIRTGLMF--DLFISNALIDMYAKCGQLRLAQSIF-DLSE 441

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           K+  S+  +I    +   S ++L  F ++   G+  D       L AC  L     G+ +
Sbjct: 442 KDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEI 501

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HG +++       F+A++L+ +Y K G L+ A K+F+ +  ++V +WN+MI+GY  +G  
Sbjct: 502 HGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQI 561

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           + A  +F  M   GV    VS  ++LS  ++   ++ GK+  +  +   +E   +  + +
Sbjct: 562 DAAFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQNLEPQQMHYACM 621

Query: 325 INFYSKVG-LLEDAEVVFSRMVERDIVTWNLLIAS 358
           ++   + G L E  E++       +   W  L+ +
Sbjct: 622 VDLLGRSGQLTESVEIILDMPFHANSDVWGALLGA 656


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 186/569 (32%), Positives = 302/569 (53%), Gaps = 58/569 (10%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           ++ +  I        ++ A   +  M   NV  +N+MI G+VQ+    +A+ ++ +M   
Sbjct: 15  YLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRA 74

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            V PT  +  S++ A   +  L   +  H     NG +                      
Sbjct: 75  NVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFD---------------------- 112

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
                                      S V V +S+VD Y+   RI+ + +VF+ +  RD
Sbjct: 113 ---------------------------SHVFVQTSLVDFYSSMGRIEESVRVFDEMPERD 145

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFL 457
           V  W T+++    +G    A RLF  M       N+ +WN++I G+ R  +++ A+ +F 
Sbjct: 146 VFAWTTMVSGLVRVGDMSSAGRLFDMMP----DRNLATWNTLIDGYARLREVDVAELLFN 201

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
           QM +     ++I+WTT+I+  +QN    EA+  F EM + GI P   T+   +SAC  + 
Sbjct: 202 QMPA----RDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLG 257

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           +L  G+ IH Y+++H   L   I ++L+DMYAKCG++ ++  +F     K L  +N++I 
Sbjct: 258 ALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIE 317

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
           G A+HG A EALA+F  ++++ I P+ +TF ++L+AC+HAGL+ EG + F  M  DH + 
Sbjct: 318 GLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIP 377

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
           P +EH+GC+V+LLS+ G L+EAL++I TM  +P+A I G+LLS C      E+A+  +  
Sbjct: 378 PGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANK 437

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN-PGCSWIQIGEELHVFV 756
           L+ LEP N G Y  L N  A   RW E +++R  MKE+G+ K  PG SWI++  ++H F 
Sbjct: 438 LMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQFA 497

Query: 757 ACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           A D+SH  ++EIY+ LA L   ++L   V
Sbjct: 498 ASDKSHAASDEIYSLLAELDGQMKLAGYV 526



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 210/431 (48%), Gaps = 44/431 (10%)

Query: 108 NGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL 167
           N D +  N+++ + L  F    + +D A   + ++ + NVF + A+I    +     +AL
Sbjct: 11  NQDCYLMNQFI-SALSTF----NRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQAL 65

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
             +V+M    VSP ++  P+++KACG +  + F  AVHG+V + GFD  VFV +SL+D Y
Sbjct: 66  ELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFY 125

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
              G +EE+ +VFD M  R+V AW +M+ G V+ G    A R+F  M      P R   T
Sbjct: 126 SSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMM------PDRNLAT 179

Query: 288 --SILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRM 344
             +++   A L  +D      A  + N M   +++  +++IN YS+     +A  VF+ M
Sbjct: 180 WNTLIDGYARLREVDV-----AELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEM 234

Query: 345 VERDI----VTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERI 383
            +  I    VT   +I++    G                   DV + S+++DMYAKC  +
Sbjct: 235 AKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSL 294

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           D +  +F  +  +++  WN+++   A  G + EA  +F +M+ E I PN +++ SV+   
Sbjct: 295 DRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSAC 354

Query: 444 LRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
              G + E +  F  M +   + P +  +  ++  L++     EA+   + M    ++P+
Sbjct: 355 NHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTM---KLEPN 411

Query: 503 TTTITCALSAC 513
                  LS C
Sbjct: 412 AVIWGALLSGC 422



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 202/432 (46%), Gaps = 59/432 (13%)

Query: 47  YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARIL 106
           Y   I    +  Q  +A++L  +M   N       +  L++ C     +   + +H  + 
Sbjct: 48  YNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVW 107

Query: 107 KNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA 166
           +NG  F  + +V+T LV FY+    ++ + R+F  +  ++VF+W  ++    RVG     
Sbjct: 108 RNG--FDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVG----- 160

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
                +M   G   D  ++P                           D  +   ++LID 
Sbjct: 161 -----DMSSAGRLFD--MMP---------------------------DRNLATWNTLIDG 186

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           Y +  +++ A  +F+ M AR++++W +MI  Y QN    EA+ VF EM   G+ P  V++
Sbjct: 187 YARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTM 246

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE 346
            +++SA A+L ALD GK+ H   + +G  LD  +GS++I+ Y+K G L+ + ++F ++ E
Sbjct: 247 ATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLRE 306

Query: 347 RDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
           +++  WN +I      G ++  +A     M+ K ER           I  + V + ++L+
Sbjct: 307 KNLFCWNSVIEGLAVHGYAEEALA-----MFDKMER---------EKIKPNGVTFVSVLS 352

Query: 407 AYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
           A    G   E  + F  M  +  I P +  +  ++    + G + EA  +   ++++ ++
Sbjct: 353 ACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQL---IRTMKLE 409

Query: 466 PNLITWTTLISG 477
           PN + W  L+SG
Sbjct: 410 PNAVIWGALLSG 421



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 16/220 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+  S+ K+ REA+ +  EM              ++  C +   +  G++IH  I
Sbjct: 210 SWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYI 269

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +++G  F  + Y+ + L+  YAKC +LD +  +F +LR KN+F W ++I      G +E+
Sbjct: 270 MQHG--FNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEE 327

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV-------HGYVLKVGFDGCVF 218
           AL  F +M+ + + P+     +VL AC   G +  GR         H     V   GC  
Sbjct: 328 ALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGC-- 385

Query: 219 VASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVG 257
               ++D+  K G LEEA ++   M +  N V W +++ G
Sbjct: 386 ----MVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSG 421


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 185/569 (32%), Positives = 296/569 (52%), Gaps = 86/569 (15%)

Query: 289 ILSASANLDALDEGKQAHA-VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           +L A      ++ G++ H  V+       D VL + II  YS  G   D+ +VF ++  +
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 170

Query: 348 DIVTWNLLIASYVQS-----------------------------------------GQ-- 364
           ++  WN ++++Y ++                                         GQ  
Sbjct: 171 NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 230

Query: 365 ----------SDVVVASSIVDMYAKCERIDNA-KQVFNSIILRDVVLWNTLLAAYADLGR 413
                     SDV V ++++ MY KC  ++ A K+VF+ +  + V  WN LL  YA    
Sbjct: 231 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSD 290

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM--FLQMQSLGVQP----- 466
             +A  L+ QM   G+ P+  +  S++L   R   ++  +++  F     L V P     
Sbjct: 291 PRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGIS 350

Query: 467 ------------------------NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
                                   +L++W  +I+G +QN   +EAI  F++ML  GI+P 
Sbjct: 351 LLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPY 410

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
              I C   AC+ +++LR G+ +H + ++  L     + +S++DMYAK G I  ++R+FD
Sbjct: 411 EIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFD 470

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
               K++  +N +I+GY +HG   EAL LF+ + + G+ PD  TFT IL ACSHAGLV +
Sbjct: 471 RLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVED 530

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           GLE F  M + H ++P +EH+ CVV++L R G +D+ALR+I  MP DPD+ I  SLLS+C
Sbjct: 531 GLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSC 590

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
                  L E ++  LL+LEP+ P NYV +SN +A SG+W++V +VR  MK+ GL+K+ G
Sbjct: 591 RIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAG 650

Query: 743 CSWIQIGEELHVFVACDRSHPKTEEIYAT 771
           CSWI++G ++H F+  D   P+ EE+  T
Sbjct: 651 CSWIEVGGKVHNFLIGDEMLPELEEVRET 679



 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 173/602 (28%), Positives = 294/602 (48%), Gaps = 66/602 (10%)

Query: 19  PQKPLKLS-QTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLL---TEMKCRN 74
           P   L LS QT  TK     NS  +   S  H+I  L +   ++EA+D L   ++    +
Sbjct: 41  PIASLSLSAQTRQTKSLSFANSSTNRQFSSLHEIKKLCESGNLKEALDFLQRESDDVVLD 100

Query: 75  FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV-ETKLVVFYAKCDALD 133
                E  G LLQ C  ++D+  G+++H  +  +  F   N++V  T+++  Y+ C +  
Sbjct: 101 SAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFC--NDFVLNTRIITMYSMCGSPS 158

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKAC 192
            +  +F +LR KN+F W AI+    R  L E A+  F E+       PDNF LP V+KAC
Sbjct: 159 DSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC 218

Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA-RKVFDGMIARNVVAW 251
             L  +G G+ +HG   K+     VFV ++LI MYGKCG +EEA ++VFD M  + V +W
Sbjct: 219 AGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSW 278

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N+++ GY QN    +A+ ++ +MT  G++P   ++ S+L A + + +L  G++ H  A+ 
Sbjct: 279 NALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALR 338

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------- 363
           NG+ +D  +G S+++ Y   G    A+V+F  M  R +V+WN++IA Y Q+G        
Sbjct: 339 NGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINL 398

Query: 364 --------------------------------------------QSDVVVASSIVDMYAK 379
                                                         D+ V+SSI+DMYAK
Sbjct: 399 FRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAK 458

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              I  ++++F+ +  +DV  WN ++A Y   GR  EA  LF +M   G+ P+  ++  +
Sbjct: 459 GGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGI 518

Query: 440 ILGFLRNGQMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           ++     G + +  + F QM +L  ++P L  +T ++  L +    ++A+   +EM    
Sbjct: 519 LMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPG-- 576

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
             P +   +  LS+C    +L  G  +   L+  +   P   V  + +++A  G     +
Sbjct: 577 -DPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVL-ISNLFAGSGKWDDVR 634

Query: 559 RV 560
           RV
Sbjct: 635 RV 636


>gi|255538774|ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551153|gb|EEF52639.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1218

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 196/610 (32%), Positives = 324/610 (53%), Gaps = 38/610 (6%)

Query: 21  KPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPE 80
           KP K S     K+ +S  +Y             L K+ ++ EAV  L  +     ++ P+
Sbjct: 29  KPTKSSVPFTKKITDSHLNY-------------LCKKGRLNEAVSALELIAQHGSKVSPK 75

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
            +  LLQ C+    +  G+++HA      +   +N ++ETKLV  YAKC +L  A +LF 
Sbjct: 76  TFISLLQSCIDCNSVTLGRKVHAHFHLVQE---KNPFLETKLVSMYAKCGSLSDARKLFG 132

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
            +R KN+++W+A+IG   R    ++ +  F  M E+   PD F+LP +L+ACG    +  
Sbjct: 133 EMREKNLYTWSAMIGAFSREHRWKEVVELFYMMMEENCLPDAFLLPKILQACGNSRDIKS 192

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G  VH   +K G DG  FV +S++ +Y KCG L  A K F+ M      AWN++I GY Q
Sbjct: 193 GEMVHSLAIKCGVDGYPFVNNSILAVYAKCGKLSLASKCFEMMDKSETAAWNALISGYCQ 252

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +G  EEA R+F  M  EG+EP  VS   +++    L   D   +      + G   D V 
Sbjct: 253 HGQIEEAQRLFDAMREEGIEPGLVSWNILIAGYNQLGYFDIAMELMKKMEVLGTSPDVVT 312

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS--------------- 365
            +S+I+  ++      A  +F+ M+   +    + I+S V +  S               
Sbjct: 313 WTSMISGLAQNDKASKALHLFNDMILARVEPNGVTISSAVSACASLKVLNEGLEIHALAV 372

Query: 366 ------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
                 DV+V +S++DMY+KC +++NA +VF+ +  +DV  WN+++  Y  +G  G+A  
Sbjct: 373 KLGFVEDVLVGNSLIDMYSKCGKLENAWKVFDMMPEKDVYTWNSMIGGYCQVGYCGKAHM 432

Query: 420 LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG-VQPNLITWTTLISGL 478
           LF +MQ     PN I+WN++I G++ NG  ++A D+F +M+  G ++ +  +W +LISG 
Sbjct: 433 LFMKMQKSETQPNAITWNNMIWGYIHNGDEDQAMDLFRRMEEDGKIKRDTASWNSLISGY 492

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
            Q    ++A+  F++M    I  ++ TI   L AC ++ +L+  + IHG +IR +L    
Sbjct: 493 LQIGQKDKALSIFRQMQSFSININSVTILSVLPACANLIALKMVKEIHGCVIRRNLDSLL 552

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
           PI  SL+D YAK GNI  ++ +FD +  K+   +N++I+GY + G +  AL L   +++ 
Sbjct: 553 PITNSLIDTYAKSGNIGYSRTIFDRALFKDFITWNSLIAGYVLFGCSDAALGLVDQMKKL 612

Query: 599 GIDPDSITFT 608
           GI P+  TF+
Sbjct: 613 GIKPNRSTFS 622



 Score =  208 bits (530), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 123/459 (26%), Positives = 226/459 (49%), Gaps = 53/459 (11%)

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           + G   EA+     +   G + +  +  S+L +  + +++  G++ HA   +   E +  
Sbjct: 51  KKGRLNEAVSALELIAQHGSKVSPKTFISLLQSCIDCNSVTLGRKVHAHFHLV-QEKNPF 109

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY-------------------- 359
           L + +++ Y+K G L DA  +F  M E+++ TW+ +I ++                    
Sbjct: 110 LETKLVSMYAKCGSLSDARKLFGEMREKNLYTWSAMIGAFSREHRWKEVVELFYMMMEEN 169

Query: 360 --------------------VQSGQ------------SDVVVASSIVDMYAKCERIDNAK 387
                               ++SG+                V +SI+ +YAKC ++  A 
Sbjct: 170 CLPDAFLLPKILQACGNSRDIKSGEMVHSLAIKCGVDGYPFVNNSILAVYAKCGKLSLAS 229

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
           + F  +   +   WN L++ Y   G+  EA RLF  M+ EGI P ++SWN +I G+ + G
Sbjct: 230 KCFEMMDKSETAAWNALISGYCQHGQIEEAQRLFDAMREEGIEPGLVSWNILIAGYNQLG 289

Query: 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
             + A ++  +M+ LG  P+++TWT++ISGL QN   ++A+  F +M+   ++P+  TI+
Sbjct: 290 YFDIAMELMKKMEVLGTSPDVVTWTSMISGLAQNDKASKALHLFNDMILARVEPNGVTIS 349

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
            A+SAC  +  L  G  IH   ++        +  SL+DMY+KCG +  A +VFD+ P K
Sbjct: 350 SAVSACASLKVLNEGLEIHALAVKLGFVEDVLVGNSLIDMYSKCGKLENAWKVFDMMPEK 409

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           ++  +N+MI GY   G   +A  LF  +Q+    P++IT+ N++    H G  ++ ++LF
Sbjct: 410 DVYTWNSMIGGYCQVGYCGKAHMLFMKMQKSETQPNAITWNNMIWGYIHNGDEDQAMDLF 469

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
             M  D ++K     +  +++   + G  D+AL +   M
Sbjct: 470 RRMEEDGKIKRDTASWNSLISGYLQIGQKDKALSIFRQM 508



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 223/501 (44%), Gaps = 63/501 (12%)

Query: 158 CRVGLSEKALIGFVEMQEDG--VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
           C+ G   +A+     + + G  VSP  F+  ++L++C     V  GR VH +   V  + 
Sbjct: 50  CKKGRLNEAVSALELIAQHGSKVSPKTFI--SLLQSCIDCNSVTLGRKVHAHFHLVQ-EK 106

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
             F+ + L+ MY KCG L +ARK+F  M  +N+  W++MI  + +    +E + +FY M 
Sbjct: 107 NPFLETKLVSMYAKCGSLSDARKLFGEMREKNLYTWSAMIGAFSREHRWKEVVELFYMMM 166

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            E   P    +  IL A  N   +  G+  H++A+  G++    + +SI+  Y+K G L 
Sbjct: 167 EENCLPDAFLLPKILQACGNSRDIKSGEMVHSLAIKCGVDGYPFVNNSILAVYAKCGKLS 226

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI-- 393
            A   F  M + +   WN LI+ Y Q GQ                  I+ A+++F+++  
Sbjct: 227 LASKCFEMMDKSETAAWNALISGYCQHGQ------------------IEEAQRLFDAMRE 268

Query: 394 --ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
             I   +V WN L+A Y  LG    A  L  +M++ G SP++++W S+I G  +N + ++
Sbjct: 269 EGIEPGLVSWNILIAGYNQLGYFDIAMELMKKMEVLGTSPDVVTWTSMISGLAQNDKASK 328

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A  +F  M    V+PN +T ++ +S        NE +      ++ G           + 
Sbjct: 329 ALHLFNDMILARVEPNGVTISSAVSACASLKVLNEGLEIHALAVKLGFVEDVLVGNSLID 388

Query: 512 ACTDVASLRNGRAIHGYLIRHDL------------------------------CLPTPIV 541
             +    L N   +   +   D+                                P  I 
Sbjct: 389 MYSKCGKLENAWKVFDMMPEKDVYTWNSMIGGYCQVGYCGKAHMLFMKMQKSETQPNAIT 448

Query: 542 -TSLVDMYAKCGNIHQAKRVF-----DISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
             +++  Y   G+  QA  +F     D    ++   +N++ISGY   G   +AL++F+ +
Sbjct: 449 WNNMIWGYIHNGDEDQAMDLFRRMEEDGKIKRDTASWNSLISGYLQIGQKDKALSIFRQM 508

Query: 596 QQKGIDPDSITFTNILNACSH 616
           Q   I+ +S+T  ++L AC++
Sbjct: 509 QSFSININSVTILSVLPACAN 529


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  326 bits (835), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 190/611 (31%), Positives = 304/611 (49%), Gaps = 55/611 (9%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           GRA  G  L+          +S++  + +     +AR VFD    R    W   I G  +
Sbjct: 29  GRAARGGSLEARLATVPHERASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCAR 88

Query: 261 NGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
            G   + +R F EM  EG   P    + +++   A +  ++ GK+ H   + NG+ LD V
Sbjct: 89  RGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVV 148

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           L +++++ Y+K G  E A  VF  M ERD V+WN+ I + +QSG                
Sbjct: 149 LCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGD--------------- 193

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              I  + Q+F+   LRD   WNT+++     G + +A     +M   G+  N  ++++ 
Sbjct: 194 ---ILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTA 250

Query: 440 IL--------------------------GFLRN---------GQMNEAKDMFLQMQSLGV 464
            +                           F+R+         G +  A  +F     L  
Sbjct: 251 FVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTR 310

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
             N   W+T+++G  QN    EA+  F+ ML  G+     T+T   +AC +V  +  GR 
Sbjct: 311 DMNF-AWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQ 369

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           +HG + +    L  P+ +++VDMYAKCGN+  A+ +FD + +K + V+ +M+  YA HG 
Sbjct: 370 VHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQ 429

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG 644
              A+ LF+ +  + + P+ IT   +L+ACSH GLV+EG   F  M  ++ + PS+EH+ 
Sbjct: 430 GRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYN 489

Query: 645 CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
           C+V+L  R G LD+A   I     + +A +  +LLS C      E A+  SE L+QLE  
Sbjct: 490 CIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQC 549

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPK 764
           + G+YV LSN YA + +W++  ++R  M+E+ +RK PG SWI +   +H FVA D SHP+
Sbjct: 550 DAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQ 609

Query: 765 TEEIYATLALL 775
           + EIYA L  L
Sbjct: 610 SAEIYAYLEKL 620



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 207/433 (47%), Gaps = 56/433 (12%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
           +   +++ C    D+ +G+++H  +L+NG     +  +   ++  YAKC   + A R+F 
Sbjct: 114 VLAAVVRCCAGMGDVESGKRVHGWMLRNGVHL--DVVLCNAVLDMYAKCGQFERARRVFG 171

Query: 141 RLRVKNVFSWAAIIGLNC--------------------------------RVGLSEKALI 168
            +  ++  SW   IG  C                                R G +  AL 
Sbjct: 172 AMAERDAVSWNIAIGA-CIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALS 230

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
               M + GV  +++         G L     GR +HG VL    +G  FV SSL+DMY 
Sbjct: 231 HLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYC 290

Query: 229 KCGDLEEARKVFDGM--IARNV-VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           KCG LE A  VFD    + R++  AW++M+ GYVQNG  EEA+ +F  M  EGV   R +
Sbjct: 291 KCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFT 350

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           +TS+ +A AN+  +++G+Q H        +LD  L S+I++ Y+K G LEDA  +F R  
Sbjct: 351 LTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRAC 410

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
            ++I  W  ++ SY   GQ  +      ++++   ER+   K   N I L  V      L
Sbjct: 411 TKNIAVWTSMLCSYASHGQGRIA-----IELF---ERMTAEKMTPNEITLVGV------L 456

Query: 406 AAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           +A + +G   E    F QMQ E GI P+I  +N ++  + R+G +++AK+    ++   +
Sbjct: 457 SACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNF---IEENNI 513

Query: 465 QPNLITWTTLISG 477
               I W TL+S 
Sbjct: 514 NHEAIVWKTLLSA 526



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 125/504 (24%), Positives = 212/504 (42%), Gaps = 94/504 (18%)

Query: 101 IHARILKNGDFFARNEYV---ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           +  R  + G   AR   V      ++ F+ +      A  +F     +    W   I   
Sbjct: 27  LRGRAARGGSLEARLATVPHERASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGC 86

Query: 158 CRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
            R G     +  F EM  +G  +P+ FVL  V++ C  +G V  G+ VHG++L+ G    
Sbjct: 87  ARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLD 146

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V + ++++DMY KCG  E AR+VF  M  R+ V+WN  I   +Q+G    ++++F E  L
Sbjct: 147 VVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPL 206

Query: 277 EGVEPTRVSVTSILSASANLDAL-------------------------------DEGKQA 305
                    ++ ++ +    DAL                               D G+Q 
Sbjct: 207 RDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQL 266

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM--VERDI-VTWNLLIASYVQS 362
           H   +I  +E D  + SS+++ Y K GLLE A  VF     + RD+   W+ ++A YVQ+
Sbjct: 267 HGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQN 326

Query: 363 GQS----------------------------------------------------DVVVA 370
           G+                                                     D  +A
Sbjct: 327 GREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLA 386

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           S+IVDMYAKC  +++A+ +F+    +++ +W ++L +YA  G+   A  LF +M  E ++
Sbjct: 387 SAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMT 446

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAIL 489
           PN I+   V+      G ++E +  F QMQ   G+ P++  +  ++    ++   ++A  
Sbjct: 447 PNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKN 506

Query: 490 FFQEMLETGIKPSTTTITCALSAC 513
           F +   E  I          LSAC
Sbjct: 507 FIE---ENNINHEAIVWKTLLSAC 527



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 3/172 (1%)

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           A L  GRA  G  +   L        S++  + +    H A+ VFD  P++  PV+   I
Sbjct: 24  ALLLRGRAARGGSLEARLATVPHERASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTI 83

Query: 577 SGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           SG A  G   + +  F  +  +G   P++     ++  C+  G V  G  +   M  +  
Sbjct: 84  SGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRN-G 142

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
           V   +     V+++ ++CG  + A RV   M  + DA      +  C++S +
Sbjct: 143 VHLDVVLCNAVLDMYAKCGQFERARRVFGAMA-ERDAVSWNIAIGACIQSGD 193


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 183/571 (32%), Positives = 304/571 (53%), Gaps = 63/571 (11%)

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           +N LNE A+     +   G+     ++ S+L   A+  AL EGK+ H    + G++    
Sbjct: 37  KNKLNE-AVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGT 95

Query: 320 -LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------QS 365
            L + +IN Y+K G   +A  VF +M  R++ +WN +++ Y + G             + 
Sbjct: 96  FLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK 155

Query: 366 DVVVASSIVDMYAKCERIDNA-----------------------------------KQVF 390
           DVV  +++V  +A+C   D A                                   +QV 
Sbjct: 156 DVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVH 215

Query: 391 NSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
             I+    L +VVL +++L AY   G  G+A +LF +M     + ++++W +++ G+ + 
Sbjct: 216 GQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMS----ARDVLAWTTMVSGYAKW 271

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G M  A ++F++M     + N ++WT LISG  +N  G++A+  F +M+   ++P   T 
Sbjct: 272 GDMKSANELFVEMP----EKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTF 327

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
           +  L AC  +ASL++G+ IH YL+R +    T +V++L+DMY+KCG++   ++VFD+  +
Sbjct: 328 SSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGN 387

Query: 567 K-ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
           K ++ ++N +IS  A HG   EA+ +  ++ + G  PD ITF  ILNACSH+GLV +GL 
Sbjct: 388 KLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLN 447

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
            F  M  D+ + PS EH+ C+++LL R G  +E +  +  MP  PD  +  +LL  C   
Sbjct: 448 FFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIH 507

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
              EL    +E L++LEP +   YV LS+ YA  GRW  V +VR +M E+ ++K    SW
Sbjct: 508 GHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISW 567

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLALLG 776
           ++I  ++H F   D SHP  E+IY+ L  L 
Sbjct: 568 LEIENKVHSFSVSDSSHPLKEQIYSVLEQLA 598



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 139/533 (26%), Positives = 226/533 (42%), Gaps = 101/533 (18%)

Query: 8   TPPNPKFS--HTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVD 65
           + PN  FS   T P+KP           R      E++ K        L K+ ++ EAV 
Sbjct: 5   SSPNLNFSPFRTNPRKP-----------RRRPCLVEAIVK--------LCKKNKLNEAVS 45

Query: 66  LLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARIL-----KNGDFF-------- 112
            L  +  R  ++       LLQ C   R +  G+++H  +      + G F         
Sbjct: 46  SLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMY 105

Query: 113 -----------------ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
                            ARN Y    ++  YAK   +  A +LF ++  K+V SW  ++ 
Sbjct: 106 AKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVI 165

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
            + + G  ++AL  + E ++ G+  + F    VL  C  L  VG  R VHG +L  GF  
Sbjct: 166 AHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLS 225

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM--------------------- 254
            V ++SS++D Y KCG + +ARK+FD M AR+V+AW +M                     
Sbjct: 226 NVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMP 285

Query: 255 ----------IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
                     I GY +NG+  +A+ +F +M L  V P + + +S L A A++ +L  GKQ
Sbjct: 286 EKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQ 345

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER-DIVTWNLLIASYVQSG 363
            HA  +    + + ++ S++I+ YSK G L     VF  M  + D+V WN +I++  Q G
Sbjct: 346 IHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHG 405

Query: 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
             +              E I     +  S    D + +  +L A +  G   +    F  
Sbjct: 406 CGE--------------EAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFES 451

Query: 424 MQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           M  + GI P+   +  +I    R G   E  D   Q++ +  +P+   W  L+
Sbjct: 452 MSCDYGIVPSQEHYACLIDLLGRAGCFEEVMD---QLEKMPYKPDDRVWNALL 501


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 199/667 (29%), Positives = 325/667 (48%), Gaps = 87/667 (13%)

Query: 201 GRAVHGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           G+ +H +++K+ +   C ++A++LI  Y KCG L  A+ VF+ +  +NVV++N +I G  
Sbjct: 26  GQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLS 85

Query: 260 QNGLNEE--AIRVFYEMTLEGVEPTRVSVTSILSASA-NLDALDEGKQAHAVAVINGMEL 316
            NG       + +F  M    + P   +   + +A+A NL    + +Q H + +      
Sbjct: 86  HNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASID 145

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY----------------- 359
           D  +GSS++NFY KVG + +A  +F RM ER++V+W  +I+ Y                 
Sbjct: 146 DVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMR 205

Query: 360 -----------------------VQSGQSD------------VVVASSIVDMYAKCERID 384
                                  V SG+              V V +++V MYAKC  ++
Sbjct: 206 LVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLN 265

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
            +  +F     ++ + W+ L+  Y+  G S +A +LF +M   G  P+  +   V+    
Sbjct: 266 YSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACS 325

Query: 445 RNGQMNEAK----------------------DMFLQMQSLG---------VQPNLITWTT 473
               + E K                      DM+ +    G         ++P+L+ WT+
Sbjct: 326 DVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTS 385

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +I+G  QN    EA+  +  M    I P+  T+   L AC+++A+L  G+ IH   I++ 
Sbjct: 386 IIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYG 445

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
           L     I ++L  MYAKCG++ +   +F     +++  +NAMISG + +G   EAL LF+
Sbjct: 446 LGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFE 505

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            ++ +G  PD ITF  +L+ACSH G+V  G   F  MF +  + P +EH+ C+V++LSR 
Sbjct: 506 EMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRA 565

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G L+EA   I +   D    +   LL  C      EL  Y  E L++L       YV LS
Sbjct: 566 GKLNEAKEFIESAIIDHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLS 625

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           + Y A GR  +V +VR +MK +G+RK  GCSWI++   +HVFV  D+ HP+ EEI   + 
Sbjct: 626 SIYTAMGRLADVVRVRRMMKVRGVRKETGCSWIELKSHVHVFVVGDQIHPQIEEIQGAIW 685

Query: 774 LLGMHVR 780
            L  H++
Sbjct: 686 RLRKHMK 692



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 145/491 (29%), Positives = 253/491 (51%), Gaps = 31/491 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  + ++  +EA+ +   M+     +   ++  +L   V    + +G+Q+H  +
Sbjct: 180 SWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVV 239

Query: 106 LKNGDFFARNEYVET--KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163
           +KNG      E+V     LV  YAKC  L+ +  LF     KN  +W+A+I    + G S
Sbjct: 240 VKNGVL----EFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDS 295

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
            KAL  F +M   G  P  F L  VLKAC  +  +  G+  HGY+LK G++  ++ A++L
Sbjct: 296 HKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATAL 355

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           +DMY K G   +ARK FD ++  ++V W S+I GYVQNG NEEA+ ++  M +  + P  
Sbjct: 356 VDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNE 415

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           +++ S+L A +NL AL++GKQ HA  +  G+  +  + S++   Y+K G LE+  ++F R
Sbjct: 416 LTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRR 475

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           M++RDIV+WN +I+   Q+G          ++++ +  R++  K         D + + T
Sbjct: 476 MLQRDIVSWNAMISGLSQNGH-----GREALELFEEM-RLEGTKP--------DHITFVT 521

Query: 404 LLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
           +L+A + +G        F  M  E  + P +  +  ++    R G++NEAK+    ++S 
Sbjct: 522 VLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEF---IESA 578

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQE-MLETGIKPST-----TTITCALSACTDV 516
            +   +  W  L+    +N C  E   +  E ++E G + S+     ++I  A+    DV
Sbjct: 579 IIDHGMCLWRILLPA-CRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADV 637

Query: 517 ASLRNGRAIHG 527
             +R    + G
Sbjct: 638 VRVRRMMKVRG 648


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 185/577 (32%), Positives = 302/577 (52%), Gaps = 82/577 (14%)

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE- 265
           Y+ K   +  +F  + +I    + GD++ A  VF GM A+N V+WNS++VG  ++     
Sbjct: 51  YLTKPSDEDQIFPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMM 110

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           EA ++F E+     EP   S   +LS                                  
Sbjct: 111 EAHQLFDEIP----EPDTFSYNIMLSC--------------------------------- 133

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDN 385
             Y + G  E A+  F+RM  +D  +WN +I  Y + G+                  ++ 
Sbjct: 134 --YVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGE------------------MEK 173

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A+ +F S++ ++ V WN +++ Y + G   +A+  F      G+    ++W ++I G+++
Sbjct: 174 ARVLFYSMMEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGV----VAWTAMITGYMK 229

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
             ++  A+ MF  M    V+ NL+TW  +ISG  +NS   + +  F+ MLE GI+P+++ 
Sbjct: 230 AKKVELAEAMFKDMT---VKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSG 286

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           ++ AL  C+++++L  GR IH                  + MY KCG +  A ++F+   
Sbjct: 287 LSSALLGCSELSALCLGRQIHQ-----------------IVMYCKCGELGDAWKLFEAMK 329

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            K++  +NAMISGYA HG A +AL LF  ++     PD ITF  +L AC+HAGLV+ G+ 
Sbjct: 330 KKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMT 389

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
            F  M  D++V+P  +H+ C+V+LL R G ++EAL++I +MP  P A + G+LL  C   
Sbjct: 390 YFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACRVH 449

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
              ELAE+ +E LL+L+P N   YV L+N YA+   W +V++VR  MKE  + K PG SW
Sbjct: 450 KNVELAEFAAEKLLELDPRNAAGYVQLANIYASKNLWEDVARVRKRMKESNVVKVPGYSW 509

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
           I+I  ++H F + DR HP+ + I+  L  L   ++L 
Sbjct: 510 IEIRNKIHHFRSSDRIHPELDSIHKKLKELERKMKLA 546



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 26/242 (10%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y +    + A   F R+  K+  SW  +I    R G  EKA + F  M E      N ++
Sbjct: 134 YVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVLFYSMMEKNEVSWNAMI 193

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-I 244
              ++ CG L      +A H +     F G V   +++I  Y K   +E A  +F  M +
Sbjct: 194 SGYIE-CGDLE-----KAAH-FFKAAPFRGVV-AWTAMITGYMKAKKVELAEAMFKDMTV 245

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            +N+V WN+MI GYV+N   E+ +++F  M  EG+ P    ++S L   + L AL  G+Q
Sbjct: 246 KKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQ 305

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            H + +                 Y K G L DA  +F  M ++D+V WN +I+ Y Q G 
Sbjct: 306 IHQIVM-----------------YCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGN 348

Query: 365 SD 366
           ++
Sbjct: 349 AE 350



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 18/184 (9%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVK-NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
           T ++  Y K   +++A  +F  + VK N+ +W A+I         E  L  F  M E+G+
Sbjct: 221 TAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGI 280

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
            P++  L + L  C  L  +  GR +H  V                 MY KCG+L +A K
Sbjct: 281 RPNSSGLSSALLGCSELSALCLGRQIHQIV-----------------MYCKCGELGDAWK 323

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +F+ M  ++VVAWN+MI GY Q+G  E+A+ +F+EM     +P  ++  ++L A  +   
Sbjct: 324 LFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGL 383

Query: 299 LDEG 302
           +D G
Sbjct: 384 VDIG 387


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 187/586 (31%), Positives = 315/586 (53%), Gaps = 38/586 (6%)

Query: 200 FGRAVHGY-VLKVGFDGCVFVASSLIDMYG--KCGDLEEARKVFDGMIARNVVAWNSMIV 256
           F R  H + VL   F     V  + +D+    + G ++ ARK+FD M  ++VV WNSM+ 
Sbjct: 9   FWRQRHSFFVLATLFSSTRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLS 68

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
            Y QNGL + +  +F+ M L  V    VS  SI++A    D L +  +  A A     E 
Sbjct: 69  AYWQNGLLQRSKALFHSMPLRNV----VSWNSIIAACVQNDNLQDAFRYLAAAP----EK 120

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
           +    ++II+  ++ G ++DA+ +F  M   ++V++                  +++VD 
Sbjct: 121 NAASYNAIISGLARCGRMKDAQRLFEAMPCPNVVSY------------------TAMVDG 162

Query: 377 YAKCER-IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
           YA+ E  I  A+ +F ++  R+ V W  ++    + G   EA  +F +M       N ++
Sbjct: 163 YARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWEVFVRMP----QKNDVA 218

Query: 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
             ++I GF + G+M +A+D+F +++      +L++W  +++G  QN  G EA+  F +M+
Sbjct: 219 RTAMITGFCKEGRMEDARDLFQEIRC----RDLVSWNIIMTGYAQNGRGEEALNLFSQMI 274

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
            TG++P   T      AC  +ASL  G   H  LI+H       +  +L+ +++KCG I 
Sbjct: 275 RTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIV 334

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
            ++ VF      +L  +N +I+ +A HGL  +A + F  +    + PD ITF ++L+AC 
Sbjct: 335 DSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACC 394

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
            AG VNE + LF  M  ++ + P  EH+ C+V+++SR G L  A ++I  MP   D+ I 
Sbjct: 395 RAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPFKADSSIW 454

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
           G++L+ C      EL E  +  +L L+P N G YV LSN YAA+G+W +V ++R +MKE+
Sbjct: 455 GAVLAACSVHLNVELGELAARRILNLDPFNSGAYVMLSNIYAAAGKWKDVHRIRVLMKEQ 514

Query: 736 GLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
           G++K    SW+QIG + H FV  D SHP   +I+  L  + +H+++
Sbjct: 515 GVKKQTAYSWLQIGNKTHYFVGGDPSHPNINDIHVALRRITLHMKV 560



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 159/337 (47%), Gaps = 24/337 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRN---FQIGPEIYGELLQGCVYKRDMYTG---- 98
           SY   IS L++  ++++A  L   M C N   +    + Y  +  G    R ++      
Sbjct: 124 SYNAIISGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRR 183

Query: 99  QQIHARILKNG-----------DFFAR----NEYVETKLVVFYAKCDALDVASRLFCRLR 143
             +   ++ NG           + F R    N+   T ++  + K   ++ A  LF  +R
Sbjct: 184 NSVSWVVMINGLVENGLCEEAWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEIR 243

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            +++ SW  I+    + G  E+AL  F +M   G+ PD+    +V  AC +L  +  G  
Sbjct: 244 CRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSK 303

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
            H  ++K GFD  + V ++LI ++ KCG + ++  VF  +   ++V+WN++I  + Q+GL
Sbjct: 304 AHALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGL 363

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-GMELDNVLGS 322
            ++A   F +M    V+P  ++  S+LSA      ++E     ++ V N G+   +   +
Sbjct: 364 YDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYA 423

Query: 323 SIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
            +++  S+ G L+ A  + + M  + D   W  ++A+
Sbjct: 424 CLVDVMSRAGQLQRACKIINEMPFKADSSIWGAVLAA 460



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 171/390 (43%), Gaps = 70/390 (17%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y +   L  +  LF  + ++NV SW +II    +    + A        E   +  N ++
Sbjct: 70  YWQNGLLQRSKALFHSMPLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAII 129

Query: 186 ---------------------PNVLKACGAL-------GWVGFGRAVHGYVLKVGFDGCV 217
                                PNV+     +       G +G  RA+   + +      V
Sbjct: 130 SGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWV 189

Query: 218 FVASSLID-------------------------MYGKCGD--LEEARKVFDGMIARNVVA 250
            + + L++                         + G C +  +E+AR +F  +  R++V+
Sbjct: 190 VMINGLVENGLCEEAWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVS 249

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           WN ++ GY QNG  EEA+ +F +M   G++P  ++  S+  A A+L +L+EG +AHA+ +
Sbjct: 250 WNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLI 309

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA 370
            +G + D  + +++I  +SK G + D+E+VF ++   D+V+WN +IA++ Q G  D   A
Sbjct: 310 KHGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLYD--KA 367

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGI 429
            S  D            Q+    +  D + + +LL+A    G+  E+  LF  M    GI
Sbjct: 368 RSYFD------------QMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGI 415

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
            P    +  ++    R GQ+  A  +  +M
Sbjct: 416 PPRSEHYACLVDVMSRAGQLQRACKIINEM 445


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 195/628 (31%), Positives = 320/628 (50%), Gaps = 55/628 (8%)

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           P+ F+  N++ A   +    + R V   + +      +F  ++L+  Y K G + E    
Sbjct: 39  PETFLYNNIVHAYALMKSSTYARRVFDRIPQPN----LFSWNNLLLAYSKAGLISEMEST 94

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDA 298
           F+ +  R+ V WN +I GY  +GL   A++ +  M  +     TRV++ ++L  S++   
Sbjct: 95  FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGH 154

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           +  GKQ H   +  G E   ++GS ++  Y+ VG + DA+ VF  + +R+ V +N L+  
Sbjct: 155 VSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGG 214

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
            +                   C  I++A Q+F  +  +D V W  ++   A  G + EA 
Sbjct: 215 LLA------------------CGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAI 255

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK----------------------DMF 456
             F +M+++G+  +   + SV+      G +NE K                      DM+
Sbjct: 256 ECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMY 315

Query: 457 LQMQSLGV---------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
            + + L           Q N+++WT ++ G  Q     EA+  F +M  +GI P   T+ 
Sbjct: 316 CKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLG 375

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
            A+SAC +V+SL  G   HG  I   L     +  SLV +Y KCG+I  + R+F+    +
Sbjct: 376 QAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR 435

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           +   + AM+S YA  G AVE + LF  + Q G+ PD +T T +++ACS AGLV +G   F
Sbjct: 436 DAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYF 495

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             M S++ + PS+ H+ C+++L SR G L+EA+R I  MP  PDA    +LLS C     
Sbjct: 496 KLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGN 555

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
            E+ ++ +E L++L+P +P  Y  LS+ YA+ G+W+ V+Q+R  M+EK ++K PG SWI+
Sbjct: 556 LEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIK 615

Query: 748 IGEELHVFVACDRSHPKTEEIYATLALL 775
              +LH F A D S P  ++IYA L  L
Sbjct: 616 WKGKLHSFSADDESSPYLDQIYAKLEEL 643



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 149/596 (25%), Positives = 259/596 (43%), Gaps = 101/596 (16%)

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFAR---- 114
           QI++ + L    + R  ++   I+G +++   Y         +HA  L     +AR    
Sbjct: 9   QIKQCIGLGARNQSRYVKM---IHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFD 65

Query: 115 -----NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
                N +    L++ Y+K   +      F +L  ++  +W  +I      GL   A+  
Sbjct: 66  RIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKA 125

Query: 170 FVEMQED-GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
           +  M  D   +     L  +LK   + G V  G+ +HG V+K+GF+  + V S L+ MY 
Sbjct: 126 YNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYA 185

Query: 229 KCGDLEEARKVFDGMIARNV------------------------------VAWNSMIVGY 258
             G + +A+KVF G+  RN                               V+W +MI G 
Sbjct: 186 NVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGL 245

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            QNGL +EAI  F EM ++G++  +    S+L A   L A++EGKQ HA  +    +   
Sbjct: 246 AQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHI 305

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------ 366
            +GS++I+ Y K   L  A+ VF RM ++++V+W  ++  Y Q+G+++            
Sbjct: 306 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRS 365

Query: 367 ----------------------------------------VVVASSIVDMYAKCERIDNA 386
                                                   V V++S+V +Y KC  ID++
Sbjct: 366 GIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDS 425

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
            ++FN + +RD V W  +++AYA  GR+ E  +LF +M   G+ P+ ++   VI    R 
Sbjct: 426 TRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRA 485

Query: 447 GQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
           G + + +  F  M S  G+ P++  ++ +I   +++    EA+ F   M      P    
Sbjct: 486 GLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGM---PFPPDAIG 542

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPT--PIVTSLVDMYAKCGNIHQAKR 559
            T  LSAC +  +L  G+     LI  D   P    +++S+     K  ++ Q +R
Sbjct: 543 WTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRR 598



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 179/335 (53%), Gaps = 6/335 (1%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I  L++    +EA++   EMK +  ++    +G +L  C     +  G+QIHA I
Sbjct: 237 SWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACI 296

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++    F  + YV + L+  Y KC  L  A  +F R++ KNV SW A++    + G +E+
Sbjct: 297 IRTN--FQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEE 354

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  F++MQ  G+ PD++ L   + AC  +  +  G   HG  +  G    V V++SL+ 
Sbjct: 355 AVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVT 414

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +YGKCGD++++ ++F+ M  R+ V+W +M+  Y Q G   E I++F +M   G++P  V+
Sbjct: 415 LYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVT 474

Query: 286 VTSILSASANLDALDEGKQAHAVAVIN-GMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +T ++SA +    +++G++   +     G+       S +I+ +S+ G LE+A    + M
Sbjct: 475 LTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGM 534

Query: 345 -VERDIVTWNLLIASYVQSGQSDV--VVASSIVDM 376
               D + W  L+++    G  ++    A S++++
Sbjct: 535 PFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIEL 569


>gi|15233482|ref|NP_192346.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75214457|sp|Q9XE98.1|PP303_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g04370
 gi|4982476|gb|AAD36944.1|AF069441_4 hypothetical protein [Arabidopsis thaliana]
 gi|7267194|emb|CAB77905.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656985|gb|AEE82385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 203/703 (28%), Positives = 357/703 (50%), Gaps = 97/703 (13%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G  ++ L  F  M  + + PD F  P++LKAC +L  + FG ++H  VL  GF    +++
Sbjct: 25  GDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYIS 84

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           SSL+++Y K G L  ARKVF+ M  R+VV W +MI  Y + G+  EA  +  EM  +G++
Sbjct: 85  SSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIK 144

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P  V++  +LS    +  L   +  H  AVI G + D  + +S++N Y K   + DA+ +
Sbjct: 145 PGPVTLLEMLSGVLEITQL---QCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDL 201

Query: 341 FSRMVERDIVTWNLLIASY----------------------------------------- 359
           F +M +RD+V+WN +I+ Y                                         
Sbjct: 202 FDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDL 261

Query: 360 ----------VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                     V++G   D+ + ++++ MY KC + + + +V  +I  +DVV W  +++  
Sbjct: 262 EMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGL 321

Query: 409 ADLGRSGEASRLFYQM--------------------QL---------------EGISPNI 433
             LGR+ +A  +F +M                    QL                G + + 
Sbjct: 322 MRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDT 381

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
            + NS+I  + + G ++++  +F +M     + +L++W  +ISG  QN    +A+L F+E
Sbjct: 382 PALNSLITMYAKCGHLDKSLVIFERMN----ERDLVSWNAIISGYAQNVDLCKALLLFEE 437

Query: 494 M-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           M  +T  +  + T+   L AC+   +L  G+ IH  +IR  +   + + T+LVDMY+KCG
Sbjct: 438 MKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCG 497

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
            +  A+R FD    K++  +  +I+GY  HG    AL ++      G++P+ + F  +L+
Sbjct: 498 YLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLS 557

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           +CSH G+V +GL++F  M  D  V+P+ EH  CVV+LL R   +++A +        P  
Sbjct: 558 SCSHNGMVQQGLKIFSSMVRDFGVEPNHEHLACVVDLLCRAKRIEDAFKFYKENFTRPSI 617

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            ++G +L  C  + +TE+ + I E +++L+P + G+YV L +++AA  RW++VS+  + M
Sbjct: 618 DVLGIILDACRANGKTEVEDIICEDMIELKPGDAGHYVKLGHSFAAMKRWDDVSESWNQM 677

Query: 733 KEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           +  GL+K PG S I++  +   F     SH  +++  + L LL
Sbjct: 678 RSLGLKKLPGWSKIEMNGKTTTFFMNHTSH--SDDTVSLLKLL 718


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  325 bits (833), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 190/638 (29%), Positives = 315/638 (49%), Gaps = 83/638 (13%)

Query: 203 AVHGYVLK-VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           AVH  +L+ +      ++ ++L+  Y   G L  AR+VFD M  RN+V  NS++    + 
Sbjct: 31  AVHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARA 90

Query: 262 GLNEEAIRVFYEMTLE---------------------------------GVEPTRVSVTS 288
           GL  +  R+F  +                                    GV P+R++++ 
Sbjct: 91  GLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSG 150

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
           ++  ++ L     G+Q H   +  G       GS +++ Y+KVG + DA  VF  M  ++
Sbjct: 151 VVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKN 210

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           +V  N +I   +                  +C+ +  A+ +F +I  RD + W T++   
Sbjct: 211 VVMCNTMITGLL------------------RCKMVAEARALFEAIEERDSITWTTMVTGL 252

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEAK---------- 453
              G   EA  +F +M+ EG+  +  ++ S++     L  L  G+   A           
Sbjct: 253 TQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNV 312

Query: 454 -------DMFLQMQSLGVQ---------PNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
                  DM+ + +S+ +           N+I+WT +I G  QN CG EA+  F EM   
Sbjct: 313 FVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRD 372

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           GIKP   T+   +S+C ++ASL  G   H   +   L     +  +LV +Y KCG+I  A
Sbjct: 373 GIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDA 432

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
            R+FD     +   + A++ GYA  G A E + LF+ +  KG+ PD +TF  +L+ACS +
Sbjct: 433 HRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRS 492

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           GLV++G   F  M  DH + P  +H+ C+++L SR G L +A   I  MP  PDA    +
Sbjct: 493 GLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWAT 552

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           LLS C    + E+ ++ +E+LL+L+P NP +YV L + +A+ G WN+V+++R  M+++ +
Sbjct: 553 LLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQV 612

Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           +K PGCSWI+   ++H+F A D+SHP +  IY  L  L
Sbjct: 613 KKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWL 650



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 226/466 (48%), Gaps = 56/466 (12%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV------ 147
           D   G+Q+H +IL+ G  F    +  + LV  YAK   +  A R+F  +  KNV      
Sbjct: 160 DRALGRQVHCQILRLG--FGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTM 217

Query: 148 -------------------------FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
                                     +W  ++    + GL  +AL  F  M+ +GV  D 
Sbjct: 218 ITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQ 277

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
           +   ++L ACGAL  +  G+ +H Y+ +  ++  VFV S+L+DMY KC  +  A  VF  
Sbjct: 278 YTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRR 337

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M+ +N+++W +MIVGY QNG  EEA+RVF EM  +G++P   ++ S++S+ ANL +L+EG
Sbjct: 338 MMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEG 397

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
            Q H +A+++G+     + ++++  Y K G +EDA  +F  M   D V+W  L+  Y Q 
Sbjct: 398 AQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQF 457

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G++               E ID  +++ +  +  D V +  +L+A +  G   +    F+
Sbjct: 458 GKAK--------------ETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFH 503

Query: 423 QMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
            MQ +  I P    +  +I  + R+G + +A++   QM      P+   W TL+S     
Sbjct: 504 SMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRC---PDAFGWATLLSACRLR 560

Query: 482 SCGNEAILFFQEMLETGIK-PSTTTITCALSAC----TDVASLRNG 522
                     + +L+   + P++  + C++ A      DVA LR G
Sbjct: 561 GDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRG 606



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 142/526 (26%), Positives = 225/526 (42%), Gaps = 90/526 (17%)

Query: 113 ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
            RN      L+   A+   +    RLF  L  ++  S+ A++    R G   +A   +V 
Sbjct: 74  GRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVA 133

Query: 173 MQED--GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           +  D  GV P    +  V+    ALG    GR VH  +L++GF    F  S L+DMY K 
Sbjct: 134 LLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKV 193

Query: 231 GDLEEARKVFDGMIARNVV-------------------------------AWNSMIVGYV 259
           G + +AR+VFD M  +NVV                                W +M+ G  
Sbjct: 194 GPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLT 253

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           QNGL  EA+ VF  M  EGV   + +  SIL+A   L AL+EGKQ HA       E +  
Sbjct: 254 QNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVF 313

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------QSD- 366
           +GS++++ YSK   +  AE VF RM+ ++I++W  +I  Y Q+G            Q D 
Sbjct: 314 VGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDG 373

Query: 367 ---------------------------------------VVVASSIVDMYAKCERIDNAK 387
                                                  V V++++V +Y KC  I++A 
Sbjct: 374 IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAH 433

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
           ++F+ +   D V W  L+  YA  G++ E   LF +M  +G+ P+ +++  V+    R+G
Sbjct: 434 RLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSG 493

Query: 448 QMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
            +++ +  F  M Q   + P    +T +I   +++    +A  F ++M      P     
Sbjct: 494 LVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRC---PDAFGW 550

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
              LSAC     +  G+     L++ D   P   V  L  M+A  G
Sbjct: 551 ATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVL-LCSMHASKG 595



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 171/324 (52%), Gaps = 14/324 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ++ L++     EA+D+   M+     I    +G +L  C     +  G+QIHA I +   
Sbjct: 249 VTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT-- 306

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            +  N +V + LV  Y+KC ++ +A  +F R+  KN+ SW A+I    + G  E+A+  F
Sbjct: 307 CYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVF 366

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EMQ DG+ PD+F L +V+ +C  L  +  G   H   L  G    V V+++L+ +YGKC
Sbjct: 367 SEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKC 426

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E+A ++FD M   + V+W ++++GY Q G  +E I +F +M  +GV+P  V+   +L
Sbjct: 427 GSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVL 486

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVL------GSSIINFYSKVGLLEDAEVVFSRM 344
           SA +    +D+G+     +  + M+ D+ +       + +I+ YS+ G L+ AE    +M
Sbjct: 487 SACSRSGLVDKGR-----SYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQM 541

Query: 345 VE-RDIVTWNLLIASYVQSGQSDV 367
               D   W  L+++    G  ++
Sbjct: 542 PRCPDAFGWATLLSACRLRGDMEI 565


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  325 bits (833), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 180/543 (33%), Positives = 305/543 (56%), Gaps = 40/543 (7%)

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR--VSVTSILSASANLDALD 300
           M  R+ V+WNS+I GY +NG  +E+ R+F      G+ PT+  VS  S+++     + +D
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLF------GLMPTKNVVSWNSMIAGCIEDERID 54

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           E  Q             N + S ++  Y +V   E+A  +F  M  R+++++        
Sbjct: 55  EAWQYFQAMPQRNTASWNAMISGLVR-YDRV---EEASRLFEEMPRRNVISY-------- 102

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
                     +++VD YAK   I+ A+ +FN +  ++VV W  +++ Y + G+  EA  L
Sbjct: 103 ----------TAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENL 152

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
           F QM       NI++  ++I G+ + G+ ++AK +F Q+       +L +W  +I+G  Q
Sbjct: 153 FEQMP----DKNIVAMTAMITGYCKEGKTDKAKILFDQIPC----RDLASWNAMITGYAQ 204

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
           N  G EA+    +ML+ G++P  +T+   L+AC+ +ASL+ GR  H  +++        I
Sbjct: 205 NGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISI 264

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
             +L+ MY KCG+I  ++  F      ++  +NAMI+ +A HG    ALA F  ++   +
Sbjct: 265 CNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRV 324

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
           +PD ITF ++L+AC HAG V+E L  F  M   +++ P  EHF C+V++LSR G +++A 
Sbjct: 325 EPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAY 384

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
           ++I  MP + D  I G+LL+ C      +L E  ++ +++LEP N G YV LSN YAA+G
Sbjct: 385 KIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAG 444

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            W EV++VR +M+E+G++K P  SW++I  ++H F+  D SHP+   I   L L GM ++
Sbjct: 445 MWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPEIHRI--RLELKGMKLQ 502

Query: 781 LVS 783
           +++
Sbjct: 503 MIA 505



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 193/415 (46%), Gaps = 68/415 (16%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           +S+I  Y K G  +E++++F  M  +NVV+WNSMI G +++   +EA + F  M      
Sbjct: 10  NSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAM------ 63

Query: 281 PTR--VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDA 337
           P R   S  +++S     D ++E     A  +   M   NV+  +++++ Y+K+G +E A
Sbjct: 64  PQRNTASWNAMISGLVRYDRVEE-----ASRLFEEMPRRNVISYTAMVDGYAKIGEIEQA 118

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSD-------------VVVASSIVDMYAKCERID 384
             +F+ M ++++V+W ++I+ YV++G+ D             +V  ++++  Y K  + D
Sbjct: 119 RALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTD 178

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN---IIS------ 435
            AK +F+ I  RD+  WN ++  YA  G   EA +L  QM   G+ P+   +IS      
Sbjct: 179 KAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACS 238

Query: 436 --------------------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
                                      N++I  + + G + +++  F Q+      P+++
Sbjct: 239 SLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQID----HPDVV 294

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           +W  +I+   ++   + A+  F EM    ++P   T    LSAC     +         +
Sbjct: 295 SWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSM 354

Query: 530 IRHDLCLPTPI-VTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMH 582
           I     +P P     LVD+ ++ G + +A ++    P   +  ++ A+++   +H
Sbjct: 355 IESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVH 409



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 131/253 (51%), Gaps = 30/253 (11%)

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
           D ++ ASRLF  +  +NV S+ A++    ++G  E+A   F                N +
Sbjct: 82  DRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALF----------------NCM 125

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGC-----------VFVASSLIDMYGKCGDLEEARK 238
                + W      + GYV    FD             +   +++I  Y K G  ++A+ 
Sbjct: 126 PQKNVVSWTVM---ISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKI 182

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +FD +  R++ +WN+MI GY QNG  EEA+++  +M   G++P   ++ S+L+A ++L +
Sbjct: 183 LFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLAS 242

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           L EG++ H + + +G E    + +++I  Y K G + D+E+ F ++   D+V+WN +IA+
Sbjct: 243 LQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAA 302

Query: 359 YVQSGQSDVVVAS 371
           + + G  D  +AS
Sbjct: 303 FARHGFYDRALAS 315



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 159/341 (46%), Gaps = 33/341 (9%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNF-----------QIGPEIYGELLQGCVYKRD 94
           S+   IS L +  ++ EA  L  EM  RN            +IG       L  C+ +++
Sbjct: 70  SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKN 129

Query: 95  MYTGQQIHARILKNGDFFARNEYVE----------TKLVVFYAKCDALDVASRLFCRLRV 144
           + +   + +  ++NG F       E          T ++  Y K    D A  LF ++  
Sbjct: 130 VVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPC 189

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +++ SW A+I    + G  E+AL    +M + G+ PD+  L +VL AC +L  +  GR  
Sbjct: 190 RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKT 249

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H  VLK G++  + + ++LI MY KCG + ++   F  +   +VV+WN+MI  + ++G  
Sbjct: 250 HVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFY 309

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM-ELDNVLG-- 321
           + A+  F EM    VEP  ++  S+LSA  +      GK   ++   N M E   ++   
Sbjct: 310 DRALASFGEMRSNRVEPDGITFLSLLSACGHA-----GKVHESLNWFNSMIESYKIVPRP 364

Query: 322 ---SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
              + +++  S+ G +E A  +   M  E D   W  L+A+
Sbjct: 365 EHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAA 405


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 188/589 (31%), Positives = 316/589 (53%), Gaps = 29/589 (4%)

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNV 248
           L  C  L  V   + +H  +++      + +A  LI     C     A +VF+ +   NV
Sbjct: 26  LPKCANLNQV---KQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNV 82

Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
              NS+I  +  N    +A  VF EM   G+     +   +L A + L  L   K  H  
Sbjct: 83  HLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNH 142

Query: 309 AVINGMELDNVLGSSIINFYSKVGLL--EDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
               G+  D  + +++I+ YS+ G L   DA  +F +M ERD V+WN ++   V++G+  
Sbjct: 143 IEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGE-- 200

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                           + +A+++F+ +  RD++ WNT+L  YA       A  LF +M  
Sbjct: 201 ----------------LRDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKMP- 243

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                N +SW+++++G+ + G M  A+ MF +M       N++TWT +I+G  +     E
Sbjct: 244 ---ERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPA--KNVVTWTIIIAGYAEKGLLKE 298

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           A     +M+ +G++         L+AC +   L  G   H  + + +L     ++ +L+D
Sbjct: 299 ADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLD 358

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MYAKCG++ +A  VF+  P K+L  +N M+ G  +HG   EA+ LF  ++++GI PD +T
Sbjct: 359 MYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVT 418

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           F  +L +C+HAGL++EG++ F  M   + + P +EH+GC+V+LL R G L EA++V+ TM
Sbjct: 419 FIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTM 478

Query: 667 PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726
           P +P+  I G+LL  C   NE ++A+ + ++L++L+P +PGNY  LSN YAA+  W  V+
Sbjct: 479 PMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAAEDWEGVA 538

Query: 727 QVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
            +R  MK  G+ K  G S +++ + +H F   D+SHPK+++IY  L  L
Sbjct: 539 DIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSL 587



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 133/493 (26%), Positives = 230/493 (46%), Gaps = 74/493 (15%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
            I+ E LQ      ++   +Q+HA+I++      ++ ++  KL+   + C   ++A R+F
Sbjct: 17  RIFEERLQDLPKCANLNQVKQLHAQIIRRN--LHQDLHIAPKLISALSLCRQTNLALRVF 74

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
            +++  NV    ++I  +       +A   F EMQ  G+  DNF  P +LKAC  L W+ 
Sbjct: 75  NQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLP 134

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL--EEARKVFDGMIARNVVAWNSMIVG 257
             + +H ++ K+G    ++V ++LID Y +CG L   +A K+F+ M  R+ V+WNSM+ G
Sbjct: 135 VVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGG 194

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ-AHAVAVINGM-E 315
            V+ G   +A ++F EM      P R     ++S +  LD     ++ + A  +   M E
Sbjct: 195 LVKAGELRDARKLFDEM------PQR----DLISWNTMLDGYARCREMSRAFELFEKMPE 244

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRM--VERDIVTWNLLIASYVQSG---------- 363
            + V  S+++  YSK G +E A V+F +M    +++VTW ++IA Y + G          
Sbjct: 245 RNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVD 304

Query: 364 ------------------------------------------QSDVVVASSIVDMYAKCE 381
                                                      S+  V ++++DMYAKC 
Sbjct: 305 QMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCG 364

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +  A  VFN +  +D+V WNT+L      G   EA  LF +M+ EGI P+ +++ +V+ 
Sbjct: 365 SLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLC 424

Query: 442 GFLRNGQMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
                G ++E  D F  M+ +  + P +  +  L+  L +     EAI   Q M    ++
Sbjct: 425 SCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTM---PME 481

Query: 501 PSTTTITCALSAC 513
           P+       L AC
Sbjct: 482 PNVVIWGALLGAC 494



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 165/343 (48%), Gaps = 16/343 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +  L K  ++R+A  L  EM  R+       +  +L G    R+M    ++  ++
Sbjct: 187 SWNSMLGGLVKAGELRDARKLFDEMPQRDLIS----WNTMLDGYARCREMSRAFELFEKM 242

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR--VKNVFSWAAIIGLNCRVGLS 163
            +      RN    + +V+ Y+K   +++A  +F ++    KNV +W  II      GL 
Sbjct: 243 PE------RNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLL 296

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
           ++A     +M   G+  D     ++L AC   G +  G   H  + K   +    V ++L
Sbjct: 297 KEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNAL 356

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           +DMY KCG L++A  VF+ M  +++V+WN+M+ G   +G  +EAI +F  M  EG+ P +
Sbjct: 357 LDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDK 416

Query: 284 VSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA-EVVF 341
           V+  ++L +  +   +DEG    +++  +  +         +++   + G L++A +VV 
Sbjct: 417 VTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQ 476

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
           +  +E ++V W  L+ +     + D  +A  ++D   K +  D
Sbjct: 477 TMPMEPNVVIWGALLGACRMHNEVD--IAKEVLDNLVKLDPSD 517


>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 692

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 198/651 (30%), Positives = 314/651 (48%), Gaps = 75/651 (11%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+A+H  +L+ G    V++ +SL+++Y KCG + +A+ VF+ +  ++VV+WN +I GY Q
Sbjct: 29  GKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQ 88

Query: 261 NGL--NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            G       + +F  M  E   P   + + + +A+++      G QAHA+A+      D 
Sbjct: 89  KGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDV 148

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV-----------------Q 361
            +GSS+IN Y K+G + DA  VF  + ER+ V+W  +I+ Y                  +
Sbjct: 149 FVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFLLMRRE 208

Query: 362 SGQSDVVVASSI-----------------------------------VDMYAKCERIDNA 386
            G  D  + +S+                                   V MY KC  +D+A
Sbjct: 209 EGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDA 268

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
            + F     +D + W+ ++  YA  G S EA  LFY M L G  P+  ++  VI      
Sbjct: 269 FKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDI 328

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT--QNSCGN-----EAILFFQE------ 493
           G + E K    Q+    ++           G    +  CG+     +   + +E      
Sbjct: 329 GALEEGK----QIHGYSLKAGYECQIYFRKGFDYLKAKCGSLVDARKGFDYLKEPDIVLW 384

Query: 494 ----MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
               M    I P   T+   L AC+ +A+L  G+ IH   I++   L  PI ++L  MYA
Sbjct: 385 TSCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYA 444

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           KCG++     VF   PS+++  +NAMISG + +G  ++AL LF+ L+     PD +TF N
Sbjct: 445 KCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVN 504

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669
           +L+ACSH GLV  G   F  M  +  + P +EH+ C+V++LSR G L E    I +   D
Sbjct: 505 VLSACSHMGLVERGKVYFRMMLDEFGIIPRVEHYACMVDILSRAGKLHETKEFIESATID 564

Query: 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR 729
               +   LL  C      EL  Y  E L++L       Y+ LS+ Y A GR ++V +VR
Sbjct: 565 HGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVR 624

Query: 730 DIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            +MK +G+ K PGCSWI++  ++HVFV  D+ HP+  +I + L  L  H++
Sbjct: 625 RLMKLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIVKICSELRRLRDHMK 675



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 133/485 (27%), Positives = 227/485 (46%), Gaps = 47/485 (9%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  + E+   EA +L   M+         IY  +L        ++ G+QIH   LKNG 
Sbjct: 186 ISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGL 245

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +  V   LV  Y KC  LD A + F     K+  +W+A+I    + G S +AL  F
Sbjct: 246 LSIAS--VGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLF 303

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M  +G  P  F    V+ AC  +G +  G+ +HGY LK G++  ++       +  KC
Sbjct: 304 YNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFRKGFDYLKAKC 363

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L +ARK FD +   ++V W S                    M +E + P  +++ S+L
Sbjct: 364 GSLVDARKGFDYLKEPDIVLWTSC------------------RMQMERIMPHELTMASVL 405

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A ++L AL++GKQ HA  +  G  L+  +GS++   Y+K G LED  +VF RM  RDI+
Sbjct: 406 RACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIM 465

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           TWN +I+   Q+G+                + ++  +++ +     D V +  +L+A + 
Sbjct: 466 TWNAMISGLSQNGEG--------------LKALELFEELRHGTTKPDYVTFVNVLSACSH 511

Query: 411 LGRSGEASRLFYQMQLE--GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
           +G   E  +++++M L+  GI P +  +  ++    R G+++E K+    ++S  +   +
Sbjct: 512 MGLV-ERGKVYFRMMLDEFGIIPRVEHYACMVDILSRAGKLHETKEF---IESATIDHGM 567

Query: 469 ITWTTLISGLTQNSCGNEAILFFQE-MLETGIKPST-----TTITCALSACTDVASLRNG 522
             W  L+ G  +N    E   +  E ++E G + S+     ++I  AL    DV  +R  
Sbjct: 568 CLWRILL-GACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRL 626

Query: 523 RAIHG 527
             + G
Sbjct: 627 MKLRG 631



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/480 (22%), Positives = 189/480 (39%), Gaps = 106/480 (22%)

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M L  + P   S   +L        L +GK  HA  +  G      L +S++N Y+K G 
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------------------SDVV 368
           +  A++VF  +  +D+V+WN LI  Y Q G                          S V 
Sbjct: 61  IVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVF 120

Query: 369 VASS-----------------------------IVDMYAKCERIDNAKQVFNSIILRDVV 399
            A+S                             +++MY K   + +A++VF++I  R+ V
Sbjct: 121 TAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTV 180

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF---------------- 443
            W T+++ YA    + EA  LF  M+ E  + +   + SV+                   
Sbjct: 181 SWATIISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLA 240

Query: 444 LRNGQMNEAK----------------DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
           L+NG ++ A                 D F   +  G + + ITW+ +I+G  Q    +EA
Sbjct: 241 LKNGLLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDD-ITWSAMITGYAQAGDSHEA 299

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
           +  F  M   G KPS  T    ++AC+D+ +L  G+ IHGY ++               +
Sbjct: 300 LNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFRKGFDYL 359

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
            AKCG++  A++ FD     ++ ++ +                    +Q + I P  +T 
Sbjct: 360 KAKCGSLVDARKGFDYLKEPDIVLWTSC------------------RMQMERIMPHELTM 401

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
            ++L ACS    + +G ++       +     +     +  + ++CG+L++   V   MP
Sbjct: 402 ASVLRACSSLAALEQGKQIHAQTIK-YGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMP 460


>gi|359492597|ref|XP_002282781.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Vitis vinifera]
          Length = 724

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 187/623 (30%), Positives = 324/623 (52%), Gaps = 79/623 (12%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +  ++ K GF+  V++ ++ +D YGK G +  A+ +F+ M  R+VV+WN++I GY +NG 
Sbjct: 75  IQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGY 134

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
           + +A+ VF +M  EG  P + ++  ++ +    D + +GK  H   + +G++LD  + ++
Sbjct: 135 DYDALEVFVQMLREGFPPCQRTLVGLVPSCGRPDIIFQGKAIHGFGIKSGLDLDCRVKNA 194

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------------- 363
           + + Y+K   L+ AEV+F  + E+  V+WN +I +Y Q+G                    
Sbjct: 195 LTSMYAKCADLQAAEVLFEEIFEKTEVSWNTMIGAYGQNGLFDEAMLVFKQMQKERVEVN 254

Query: 364 --------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
                                      +D  V +S+V  YA C  I++A  ++N +  R+
Sbjct: 255 YVTIISLLSANAHLDSTHCYVIKTGFATDASVITSLVCSYAGCGNIESAGLLYNLMPQRN 314

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF-------------- 443
           +V    +++ YA+ G  G     F QM    + P+ ++  S++ GF              
Sbjct: 315 LVSLTAMISGYAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHA 374

Query: 444 --LRNG----------------QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
             L+ G                +  + + +F     +G +  LI+W ++IS   Q    +
Sbjct: 375 YGLKTGLCADCLVVNGLISMYSKFGDIETVFSLFSEMG-EKQLISWNSVISACIQVGRTS 433

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
           +A+  F +M   G  P   TI   L+ C++V  L+ G  +H Y++R++L +   + T+LV
Sbjct: 434 DAMELFCQMRMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALV 493

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           DMY KCG +  A+RVF       L  +N MISGY + G    AL+ +  +Q++G+ PD I
Sbjct: 494 DMYIKCGRLESAERVFKSIKEPCLATWNTMISGYGLSGHEHRALSCYSEMQEQGLKPDRI 553

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           TF  +L+AC+H GLV EG   F  M  D  + P ++H  C+V+LLSR G L+EA+  +  
Sbjct: 554 TFLGVLSACTHGGLVWEGKRYFRSMREDFGMIPGLQHNACMVDLLSRAGFLEEAVIFVKN 613

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           M  +PD+ I G+LL++C    E +L E +++ LL L+  + G YV +SN YA+ GRW++V
Sbjct: 614 MEVEPDSAIWGALLTSCCIHQELKLGECLAKRLLLLDYYSGGLYVLMSNLYASKGRWDDV 673

Query: 726 SQVRDIMKEKGLRKNPGCSWIQI 748
           ++VR +MK+ G   + G S I++
Sbjct: 674 ARVRKMMKDTGGDGSSGISLIEV 696



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 15/193 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+  +  +  +A++L  +M+             LL GC     +  G+++H  +L+N  
Sbjct: 423 ISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNN- 481

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
                +++ET LV  Y KC  L+ A R+F  ++   + +W  +I      G   +AL  +
Sbjct: 482 -LDMEDFLETALVDMYIKCGRLESAERVFKSIKEPCLATWNTMISGYGLSGHEHRALSCY 540

Query: 171 VEMQEDGVSPDNFVLPNVLKAC--GALGWVG--FGRAVH---GYVLKVGFDGCVFVASSL 223
            EMQE G+ PD      VL AC  G L W G  + R++    G +  +  + C      +
Sbjct: 541 SEMQEQGLKPDRITFLGVLSACTHGGLVWEGKRYFRSMREDFGMIPGLQHNAC------M 594

Query: 224 IDMYGKCGDLEEA 236
           +D+  + G LEEA
Sbjct: 595 VDLLSRAGFLEEA 607


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  325 bits (832), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 190/607 (31%), Positives = 302/607 (49%), Gaps = 89/607 (14%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +H  ++  G     F+ +  ++     G++  ARKVFD     +V  WN++I GY  +  
Sbjct: 90  IHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNF 149

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
             +AI ++  M   GV P   ++  +L A + +  L+ GK+ H      G E        
Sbjct: 150 FGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFE-------- 201

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
                                                    SDV V + +V +YAKC R+
Sbjct: 202 -----------------------------------------SDVFVQNGLVALYAKCGRV 220

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           + A+ VF  +  R++V W ++++ Y   G   EA R+F QM+   + P+ I+  SV+  +
Sbjct: 221 EQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAY 280

Query: 444 L-----------------------------------RNGQMNEAKDMFLQMQSLGVQPNL 468
                                               + GQ+  A+  F QM+     PN+
Sbjct: 281 TDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEI----PNV 336

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           + W  +ISG  +N   NEA+  FQEM+   I+  + T+  A+ AC  V SL   + +  Y
Sbjct: 337 MMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDY 396

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           + + +      + T+L+DM+AKCG++  A+ VFD +  K++ V++AMI GY +HG   +A
Sbjct: 397 INKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDA 456

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           + LF  ++Q G+ P+ +TF  +L AC+H+GLV EG ELF  M   + ++   +H+ CVV+
Sbjct: 457 IDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVD 515

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           LL R G+L+EA   I TMP +P   + G+LL  C       L EY +E L  L+P N G+
Sbjct: 516 LLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGH 575

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YV LSN YA+S  W+ V++VR +M+EKGL K+ G S I+I  +L  F   D+SHP+ +EI
Sbjct: 576 YVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEI 635

Query: 769 YATLALL 775
           +  L  L
Sbjct: 636 FEELESL 642



 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 151/534 (28%), Positives = 256/534 (47%), Gaps = 68/534 (12%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
            +  LL   V+KR +    QIHA+++ +G     + ++ TK V        +  A ++F 
Sbjct: 73  FFSSLLDHSVHKRHL---NQIHAQLVVSG--LVESGFLVTKFVNASWNIGEIGYARKVFD 127

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
                +VF W AII           A+  +  MQ  GV+PD F LP VLKAC  +  +  
Sbjct: 128 EFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEV 187

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ VHG + ++GF+  VFV + L+ +Y KCG +E+AR VF+G+  RN+V+W SMI GY Q
Sbjct: 188 GKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQ 247

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           NGL  EA+R+F +M    V+P  +++ S+L A  +++ L++GK  H   V  G+E +  L
Sbjct: 248 NGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDL 307

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG----------------- 363
             S+   Y+K G +  A   F +M   +++ WN +I+ Y ++G                 
Sbjct: 308 LISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNI 367

Query: 364 -----------------------------------QSDVVVASSIVDMYAKCERIDNAKQ 388
                                              ++DV V ++++DM+AKC  +D A++
Sbjct: 368 RTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLARE 427

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           VF+  + +DVV+W+ ++  Y   GR  +A  LFY M+  G+ PN +++  ++     +G 
Sbjct: 428 VFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGL 487

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           + E  ++F  M+  G++     +  ++  L ++   NEA  F   M    I+P  +    
Sbjct: 488 VEEGWELFHSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTM---PIEPGVSVWGA 544

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
            L AC     +  G      L   D     P  T     Y +  N++ + R++D
Sbjct: 545 LLGACKIYRHVTLGEYAAEQLFSLD-----PFNTG---HYVQLSNLYASSRLWD 590



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 156/314 (49%), Gaps = 3/314 (0%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS   +     EA+ +  +M+ RN +        +L+      D+  G+ IH  +
Sbjct: 237 SWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCV 296

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K G  F  +  +   L   YAKC  + VA   F ++ + NV  W A+I    + G + +
Sbjct: 297 VKMGLEFEPDLLI--SLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNE 354

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A+  F EM    +  D+  + + + AC  +G +   + +  Y+ K  +   VFV ++LID
Sbjct: 355 AVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALID 414

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           M+ KCG ++ AR+VFD  + ++VV W++MIVGY  +G  ++AI +FY M   GV P  V+
Sbjct: 415 MFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVT 474

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM- 344
              +L+A  +   ++EG +        G+E  +   + +++   + G L +A    + M 
Sbjct: 475 FVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMP 534

Query: 345 VERDIVTWNLLIAS 358
           +E  +  W  L+ +
Sbjct: 535 IEPGVSVWGALLGA 548



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
           R+   IH  L+   L     +VT  V+     G I  A++VFD  P   + ++NA+I GY
Sbjct: 85  RHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGY 144

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDH 634
           + H    +A+ ++  +Q  G++PD  T   +L ACS   ++  G  +      +G  SD 
Sbjct: 145 SSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDV 204

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
            V+  +      V L ++CG +++A R++ 
Sbjct: 205 FVQNGL------VALYAKCGRVEQA-RIVF 227


>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
 gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
 gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  325 bits (832), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 220/780 (28%), Positives = 374/780 (47%), Gaps = 90/780 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS   + +   E++   ++M    F+     YG ++  C   +     + +    +K G 
Sbjct: 122 ISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGY 181

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
           FF   E VE+ L+  ++K    + A ++F      NV+ W  II    R          F
Sbjct: 182 FFY--EVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLF 239

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EM      PD++   +VL AC +L  + FG+ V   V+K G +  VFV ++++D+Y KC
Sbjct: 240 HEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAED-VFVCTAIVDLYAKC 298

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G + EA +VF  +   +VV+W  M+ GY ++     A+ +F EM   GVE    +VTS++
Sbjct: 299 GHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVI 358

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM--VERD 348
           SA      + E  Q HA    +G  LD+ + +++I+ YSK G ++ +E VF  +  ++R 
Sbjct: 359 SACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQ 418

Query: 349 IVTWNLLIASYVQSGQS------------------------------------------- 365
            +  N++I S+ QS +                                            
Sbjct: 419 NIV-NVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTL 477

Query: 366 ------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
                 D+ V SS+  +Y+KC  ++ + ++F  I  +D   W ++++ + + G   EA  
Sbjct: 478 KSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIG 537

Query: 420 LFYQMQLEGISPNIISWNSV---------------ILGFLRNGQMNEAKD-------MFL 457
           LF +M  +G SP+  +  +V               I G+     +++  D       M+ 
Sbjct: 538 LFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYS 597

Query: 458 QMQSLGVQ-------PNL--ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           +  SL +        P L  ++ ++LISG +Q+    +  L F++M+ +G    +  I+ 
Sbjct: 598 KCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISS 657

Query: 509 AL--SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
            L  +A +D +SL  G  +H Y+ +  LC    + +SL+ MY+K G+I    + F     
Sbjct: 658 ILKAAALSDESSL--GAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQING 715

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            +L  + A+I+ YA HG A EAL ++  +++KG  PD +TF  +L+ACSH GLV E    
Sbjct: 716 PDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFH 775

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
              M  D+ ++P   H+ C+V+ L R G L EA   I  M   PDA + G+LL+ C    
Sbjct: 776 LNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHG 835

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
           E EL +  ++  ++LEP + G Y++LSN  A  G W+EV + R +MK  G++K PG S +
Sbjct: 836 EVELGKVAAKKAIELEPSDAGAYISLSNILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895



 Score =  209 bits (532), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 177/715 (24%), Positives = 323/715 (45%), Gaps = 138/715 (19%)

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED 176
           ++   L+ +Y+   ++  A++LF  +   +V S   +I    +  L E++L  F +M   
Sbjct: 85  FLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMHFL 144

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G   +     +V+ AC AL    F   V  + +K+G+     V S+LID++ K    E+A
Sbjct: 145 GFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDA 204

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
            KVF   ++ NV  WN++I G ++N        +F+EM +   +P   + +S+L+A A+L
Sbjct: 205 YKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASL 264

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
           + L  GK   A  +  G E D  + ++I++ Y+K G + +A  VFSR+    +V+W +++
Sbjct: 265 EKLRFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVML 323

Query: 357 ASYVQSGQS--------------------------------------------------- 365
           + Y +S  +                                                   
Sbjct: 324 SGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFY 383

Query: 366 -DVVVASSIVDMYAKCERIDNAKQVFNSI--ILRDVVLWNTLLAAYADLGRSGEASRLFY 422
            D  VA++++ MY+K   ID ++QVF  +  I R  ++ N ++ +++   + G+A RLF 
Sbjct: 384 LDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV-NVMITSFSQSKKPGKAIRLFT 442

Query: 423 QMQLEGISPNIISWNSVI-------LG-------------------------FLRNGQMN 450
           +M  EG+  +  S  S++       LG                         + + G + 
Sbjct: 443 RMLQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLE 502

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
           E+  +F   Q +  + N   W ++ISG  +     EAI  F EML+ G  P  +T+   L
Sbjct: 503 ESYKLF---QGIPFKDN-ACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVL 558

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
           + C+   SL  G+ IHGY +R  +     + ++LV+MY+KCG++  A++V+D  P  +  
Sbjct: 559 TVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPV 618

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF--- 627
             +++ISGY+ HGL  +   LF+++   G   DS   ++IL A + +   + G ++    
Sbjct: 619 SCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYI 678

Query: 628 --VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
             +G+ ++  V  S+      + + S+ G++D+         C   + I G         
Sbjct: 679 TKIGLCTEPSVGSSL------LTMYSKFGSIDDC--------CKAFSQING--------- 715

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
                            PD    + AL  +YA  G+ NE  QV ++MKEKG + +
Sbjct: 716 -----------------PDLIA-WTALIASYAQHGKANEALQVYNLMKEKGFKPD 752



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 167/377 (44%), Gaps = 55/377 (14%)

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           DV +  S++  Y+    + +A ++F++I   DVV  N +++ Y       E+ R F +M 
Sbjct: 83  DVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMH 142

Query: 426 LEGISPNIISWNSVILG-----------------------------------FLRNGQMN 450
             G   N IS+ SVI                                     F +N +  
Sbjct: 143 FLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFE 202

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
           +A  +F       +  N+  W T+I+G  +N         F EM     KP + T +  L
Sbjct: 203 DAYKVFRD----SLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVL 258

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIV--TSLVDMYAKCGNIHQAKRVFDISPSKE 568
           +AC  +  LR G+ +   +I+   C    +   T++VD+YAKCG++ +A  VF   P+  
Sbjct: 259 AACASLEKLRFGKVVQARVIK---CGAEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPS 315

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           +  +  M+SGY     A  AL +FK ++  G++ ++ T T++++AC    +V E  ++  
Sbjct: 316 VVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHA 375

Query: 629 -----GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
                G + D  V  ++      +++ S+ G++D + +V   +      +I+  ++++  
Sbjct: 376 WVFKSGFYLDSSVAAAL------ISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFS 429

Query: 684 KSNETELAEYISEHLLQ 700
           +S +   A  +   +LQ
Sbjct: 430 QSKKPGKAIRLFTRMLQ 446


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  325 bits (832), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 193/636 (30%), Positives = 310/636 (48%), Gaps = 92/636 (14%)

Query: 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           SLI  +   G ++EA   F G+        N MI G+    L  +A+  +  M   G  P
Sbjct: 59  SLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARP 118

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
            R +   +L   A   AL EG+ AHA  +  G+  D    +S++  Y+K+GL+ DAE VF
Sbjct: 119 DRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVF 178

Query: 342 SRMVERDIVTWNLLIASYVQSG-------------------------------------- 363
             M  RDIV+WN ++  YV +G                                      
Sbjct: 179 DGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESAL 238

Query: 364 ---------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                          + DV V +S+VDMY KC  +  A+ VF  + LR VV WN ++  Y
Sbjct: 239 ALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGY 298

Query: 409 ADLGRSGEASRLFYQMQLEGIS-----------------------------------PNI 433
           A   R  +A   F QM+++G                                     P++
Sbjct: 299 ALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHV 358

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
           +   +++  + + G++  ++ +F Q+        L++W  +I+         EAI  F E
Sbjct: 359 VLETALLEMYGKVGKVESSEKIFGQI----TDKTLVSWNNMIAAYMYMEMYQEAIALFLE 414

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           +L   + P   T+T  + A   + S+R  + +H Y+++      T I+ +++ MYA+CGN
Sbjct: 415 LLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGN 474

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           I  ++ +FD  P K++  +N +I GYA+HG    AL +F  ++  G++P+  TF ++L A
Sbjct: 475 IVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTA 534

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           CS +GL  EG + F  M  ++ + P +EH+GC+ +LL R G L E LR I  MP  P + 
Sbjct: 535 CSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSR 594

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           I GSLL+     N+ ++AEY +E + QLE +N G YV LS+ YA +GRW +V ++R +MK
Sbjct: 595 IWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVERIRSLMK 654

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           EKGLR+    S +++  +   FV  D SHP++E+I+
Sbjct: 655 EKGLRRTEARSLVELNNKECSFVNGDMSHPQSEKIH 690



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 139/544 (25%), Positives = 238/544 (43%), Gaps = 70/544 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L+ C     +  G+  HA ++K G     + Y    LV  YAK   +  A R+F  +  
Sbjct: 126 VLKCCARAGALGEGRAAHAAVIKLG--LGADVYTANSLVALYAKLGLVGDAERVFDGMPA 183

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQED-GVSPDNFVLPNVLKACGALGWVGFGRA 203
           +++ SW  ++      G+   AL  F EM +   V  D+  +   L AC     +  GR 
Sbjct: 184 RDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGRE 243

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +HGY ++ G +  V V +SL+DMY KCG++  A  VF  M  R VV WN MI GY  N  
Sbjct: 244 IHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNER 303

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
             +A   F +M ++G +   V+  ++L+A A  ++   G+  HA  V        VL ++
Sbjct: 304 PVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETA 363

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY------------------------ 359
           ++  Y KVG +E +E +F ++ ++ +V+WN +IA+Y                        
Sbjct: 364 LLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPD 423

Query: 360 ---------------------------VQSGQSD-VVVASSIVDMYAKCERIDNAKQVFN 391
                                      V+ G  D  ++ ++++ MYA+C  I  ++++F+
Sbjct: 424 YFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFD 483

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
            +  +DV+ WNT++  YA  G+   A  +F +M+  G+ PN  ++ SV+     +G   E
Sbjct: 484 KMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAE 543

Query: 452 AKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
               F  MQ   G+ P +  +  +   L +     E + F + M    I P++      L
Sbjct: 544 GWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENM---PIAPTSRIWGSLL 600

Query: 511 SAC-----TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           +A       D+A     R    + + H+    T     L  MYA  G     +R+  +  
Sbjct: 601 TASRNKNDIDIAEYAAERI---FQLEHN---NTGCYVVLSSMYADAGRWEDVERIRSLMK 654

Query: 566 SKEL 569
            K L
Sbjct: 655 EKGL 658



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 125/231 (54%), Gaps = 2/231 (0%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           +A D   +M+   FQ+       LL  C        G+ +HA +++    F  +  +ET 
Sbjct: 306 DAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRR--HFLPHVVLETA 363

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  Y K   ++ + ++F ++  K + SW  +I     + + ++A+  F+E+    + PD
Sbjct: 364 LLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPD 423

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
            F +  V+ A   LG +   + +H Y++K+G+     + ++++ MY +CG++  +R++FD
Sbjct: 424 YFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFD 483

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
            M  ++V++WN++I+GY  +G  + A+ +F EM   G+EP   +  S+L+A
Sbjct: 484 KMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTA 534


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  325 bits (832), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 177/546 (32%), Positives = 299/546 (54%), Gaps = 31/546 (5%)

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           WN +I  Y +      A+ V+ ++     E       S+L A   +     GK+ H   +
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV--- 367
             G++ D  +G++++  Y +   +E A +VF +M+ERD+V+W+ +I S  ++ + D+   
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 368 --------------VVASSIVDMYAKCERIDNAKQVFNSIILRD------VVLWNTLLAA 407
                         V   S+V+++A    +   K +   +I         V     LL  
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
           YA  G  G A +LF  +        ++SW ++I G +R+ ++ EA+ +F   Q+  V   
Sbjct: 272 YAKCGHLGLARQLFNGL----TQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDV--- 324

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
            + WT ++S   Q +C ++A   F +M  +G++P+  TI   LS C    +L  G+ +H 
Sbjct: 325 -MIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHS 383

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
           Y+ +  + +   + T+LVDMYAKCG+I+ A R+F  + S+++ ++NA+I+G+AMHG   E
Sbjct: 384 YIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEE 443

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVV 647
           AL +F  ++++G+ P+ ITF  +L+ACSHAGLV EG +LF  M     + P +EH+GC+V
Sbjct: 444 ALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMV 503

Query: 648 NLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707
           +LL R G LDEA  +I +MP  P+  + G+L++ C      +L E  +  LL++EP+N G
Sbjct: 504 DLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCG 563

Query: 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEE 767
             V +SN YAA+ RW++ + VR  MK  G++K PG S I++   +H F+  D+SHP+   
Sbjct: 564 YNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRR 623

Query: 768 IYATLA 773
           I   LA
Sbjct: 624 INEMLA 629



 Score =  189 bits (479), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 225/473 (47%), Gaps = 63/473 (13%)

Query: 150 WAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL 209
           W  +I    +      AL  + ++++     DNF+ P+VLKACG + W   G+ +HG+VL
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR 269
           K G D  VFV ++L+ MYG+C  +E AR VFD M+ R+VV+W++MI    +N   + A+ 
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV--INGMELDNVLGSSIINF 327
           +  EM    V P+ V++ S+++  A+   +  GK  HA  +   N   +     +++++ 
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAK 387
           Y+K G L  A  +F+ + ++ +V+W  +IA  ++S                   R++ A+
Sbjct: 272 YAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSN------------------RLEEAR 313

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI------- 440
            +F+S   RDV++W  +L+AYA      +A  LF QM+  G+ P  ++  S++       
Sbjct: 314 ALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAG 373

Query: 441 ---LG-------------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
              LG                         + + G +N A  +F++     +  ++  W 
Sbjct: 374 ALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIE----AISRDICMWN 429

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
            +I+G   +  G EA+  F EM   G+KP+  T    L AC+    +  G+ +   ++ H
Sbjct: 430 AIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMV-H 488

Query: 533 DLCLPTPI--VTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMH 582
              L   I     +VD+  + G + +A  +    P K    V+ A+++   +H
Sbjct: 489 TFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 541



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/523 (25%), Positives = 238/523 (45%), Gaps = 78/523 (14%)

Query: 11  NPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQ-------------------- 50
           NP    T P  P   SQ  L+ L ++   +  + K++FH                     
Sbjct: 37  NPTPLQTPPTSP---SQHDLSTLEQTKQIHAHIIKTHFHHALQIPLNDFPSGLSPSAQWN 93

Query: 51  --ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKN 108
             I+S +K  Q R A+++  +++  +F++   +   +L+ C        G++IH  +LK 
Sbjct: 94  FVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKK 153

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G    R+ +V   L++ Y +C  ++ A  +F ++  ++V SW+ +I    R    + AL 
Sbjct: 154 G--LDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV--ASSLIDM 226
              EM    V P    + +++        +  G+A+H YV++   +  + V   ++L+DM
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVG----------------------------- 257
           Y KCG L  AR++F+G+  + VV+W +MI G                             
Sbjct: 272 YAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAML 331

Query: 258 --YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
             Y Q    ++A  +F +M   GV PT+V++ S+LS  A   ALD GK  H+      +E
Sbjct: 332 SAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVE 391

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVD 375
           +D +L +++++ Y+K G +  A  +F   + RDI  WN +I  +   G  +       +D
Sbjct: 392 VDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGE-----EALD 446

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNII 434
           ++A+ ER          +   D+     LL A +  G   E  +LF +M    G+ P I 
Sbjct: 447 IFAEMER--------QGVKPNDITFIG-LLHACSHAGLVTEGKKLFEKMVHTFGLVPQIE 497

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            +  ++    R G ++EA +M   ++S+ ++PN I W  L++ 
Sbjct: 498 HYGCMVDLLGRAGLLDEAHEM---IKSMPIKPNTIVWGALVAA 537


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  325 bits (832), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 186/597 (31%), Positives = 301/597 (50%), Gaps = 81/597 (13%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           ++  +L  G     F+ + L++     G++  ARK+FD     +V  WN+++  Y ++G 
Sbjct: 94  IYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGF 153

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
              AI ++  M +  V P   S   +L A + L AL+ G++ H     +G E        
Sbjct: 154 FGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFE-------- 205

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
                                                    SDV V + +V +YAKC  I
Sbjct: 206 -----------------------------------------SDVFVQNGLVALYAKCGEI 224

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
             A  VF  ++ R +V W ++++ YA  G+  EA R+F +M+   + P+ I+  SV+  +
Sbjct: 225 VRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAY 284

Query: 444 LRNGQMNEAK---------------DMFLQMQSLGVQ----------------PNLITWT 472
                +   K               D+ + + SL  +                P+LI W 
Sbjct: 285 TDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWN 344

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
            +ISG  +N    EAI  F+ M    I+P + T+T +++AC  + SL   R +  Y+   
Sbjct: 345 AMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMS 404

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
           +      + TSL+D YAKCG++  A+ VFD  P K++ V++AM+ GY +HG   E++ LF
Sbjct: 405 EFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILF 464

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
             ++Q G+ P+ +TF  +L AC ++GLV EG +LF  M  D+ ++P  +H+ CVV+LL R
Sbjct: 465 HAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGR 523

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G+LD A   ++ MP +P   + G+LLS C       L EY +E L  L+P N G+YV L
Sbjct: 524 AGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQL 583

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           SN YA+S  W+ V++VR +M+EKGL K+ G S I+I  +L  F A D++HP+++EI+
Sbjct: 584 SNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIF 640



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 158/563 (28%), Positives = 260/563 (46%), Gaps = 72/563 (12%)

Query: 6   FTTPPNP--KFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREA 63
            T PPN    F    PQ P K+        R   ++ + L     H  SSL+        
Sbjct: 8   LTRPPNKVSSFIALCPQ-PFKIRPLDPPPFRFPASTLKFLET---HYSSSLNLTTHFNNN 63

Query: 64  VDLLTEMKCRNFQIGPE-IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
            D      C      P+  Y  L+   ++K  +    QI+A++L  G       ++  KL
Sbjct: 64  KD-----DCNESTFKPDKFYASLIDDSIHKTHL---NQIYAKLLVTG--LQYGGFLIAKL 113

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           V   +    +  A +LF +    +VF W AI+    R G    A+  +  MQ   VSPD 
Sbjct: 114 VNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDG 173

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
           F  P VLKAC AL  +  GR VHG + + GF+  VFV + L+ +Y KCG++  A  VF  
Sbjct: 174 FSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGR 233

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           ++ R +V+W S+I GY QNG   EA+R+F EM    V P  +++ S+L A  +++ L+ G
Sbjct: 234 LVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHG 293

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           K  H   +  G+E +  L  S+ + Y+K G +  A + F+++    ++ WN +I+ YV++
Sbjct: 294 KSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKN 353

Query: 363 G----------------------------------------------------QSDVVVA 370
           G                                                    ++DV+V 
Sbjct: 354 GYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVN 413

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           +S++D YAKC  +D A+ VF+ I  +DVV+W+ ++  Y   G+  E+  LF+ M+  G+S
Sbjct: 414 TSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVS 473

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
           PN +++  ++     +G + E  D+F +M+  G++P    +  ++  L +    + A  F
Sbjct: 474 PNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNF 533

Query: 491 FQEMLETGIKPSTTTITCALSAC 513
              M    I+P  +     LSAC
Sbjct: 534 VMNM---PIEPGVSVWGALLSAC 553


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 193/612 (31%), Positives = 324/612 (52%), Gaps = 30/612 (4%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M  DG +  + +   +L  C   G +G  RA+HG+++K G    +FVA+SL+++Y +C  
Sbjct: 67  MLRDGQTVQSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCAS 126

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
             +AR++FDGM  +NVV W ++I G+  N     A+ VF EM   G  P+  ++  +LSA
Sbjct: 127 SRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSA 186

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
            +    +D G+Q H  ++  G +    +G+S+   Y K G LE     F    +++++TW
Sbjct: 187 CSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITW 246

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
             +I+S  +      +  S  +DM            + N   L  V+   +L  A  D+ 
Sbjct: 247 TTMISSCAEDENYLDLGLSLFLDML-------EGGVMPNEFTLTSVM---SLCGARLDMS 296

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
              +     Y++   G   N+   NS +  +LR G+ +EA  +F +M S     ++ITW 
Sbjct: 297 LGKQVQAFCYKV---GCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDS----SSIITWN 349

Query: 473 TLISGLTQ-----------NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
            +ISG  Q            S G +A+  F++++ + +KP   T +  LS C+ + +L  
Sbjct: 350 AMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQ 409

Query: 522 GRAIHGYLIRHDLCLPTPIVTS-LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
           G  IH   I+   CL   +V S LV+MY KCG+I  A + F   P++    + +MISGY+
Sbjct: 410 GEQIHANTIKTG-CLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYS 468

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            HG + +A+ LF+++   G  P+ ITF ++L+ACS+AGLV E    F  M +++ ++P +
Sbjct: 469 QHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLV 528

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           +H+GC+V++  R G LD+A   I     +P+  I  SL++ C      ELA Y ++ LL+
Sbjct: 529 DHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLE 588

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           L+P     YV L N Y ++GRW +V++VR + K + +      SWI I ++++ F A D 
Sbjct: 589 LKPKVIETYVLLLNMYISTGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKVYFFRADDM 648

Query: 761 SHPKTEEIYATL 772
           +HP+  E+Y  L
Sbjct: 649 THPQATELYQLL 660



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 151/545 (27%), Positives = 246/545 (45%), Gaps = 56/545 (10%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
           +Y  LL  CV    +   + +H  ++K G   A + +V T LV  Y +C +   A RLF 
Sbjct: 78  MYVPLLHRCVEAGGLGAARALHGHMVKTGT--AADMFVATSLVNVYMRCASSRDARRLFD 135

Query: 141 RLRVKNVFSWAAIIG---LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW 197
            +  KNV +W A+I    LN    L   AL  FVEM E G  P ++ L  +L AC A   
Sbjct: 136 GMPDKNVVTWTALITGHTLNSEPAL---ALEVFVEMLELGRYPSHYTLGGMLSACSAARR 192

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           +  G+ VHGY +K G D    + +SL  +Y K GDLE   + F G   +NV+ W +MI  
Sbjct: 193 IDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISS 252

Query: 258 YVQN-GLNEEAIRVFYEMTLEGVEPTRVSVTSILS-ASANLDALDEGKQAHAVAVINGME 315
             ++    +  + +F +M   GV P   ++TS++S   A LD +  GKQ  A     G E
Sbjct: 253 CAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLD-MSLGKQVQAFCYKVGCE 311

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------- 365
            +  + +S +  Y + G  ++A  +F  M    I+TWN +I+ Y Q   S          
Sbjct: 312 ANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSR 371

Query: 366 ------------------DVVVASSIVDMYAKCERIDNAKQVFNSII----LRDVVLWNT 403
                             D+   SSI+ + +    ++  +Q+  + I    L DVV+ + 
Sbjct: 372 GFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSA 431

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           L+  Y   G    A++ F +M     +P  ++W S+I G+ ++G+  +A  +F  M   G
Sbjct: 432 LVNMYNKCGSIECATKAFVEMPTR--TP--VTWTSMISGYSQHGRSQDAIQLFEDMVLSG 487

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRNG 522
            +PN IT+ +L+S  +      EA  +F  M  E  I+P      C +     +  L + 
Sbjct: 488 ARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDA 547

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI----HQAKRVFDISPSKELPVYNAMISG 578
                ++ R        I +SLV      GN+    + A R+ ++ P K +  Y  +++ 
Sbjct: 548 ---FSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKP-KVIETYVLLLNM 603

Query: 579 YAMHG 583
           Y   G
Sbjct: 604 YISTG 608



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 158/346 (45%), Gaps = 32/346 (9%)

Query: 89  CVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVF 148
           C  + DM  G+Q+ A   K G     N  V+   +  Y +    D A RLF  +   ++ 
Sbjct: 289 CGARLDMSLGKQVQAFCYKVG--CEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSII 346

Query: 149 SWAAIIGLNCRVGLSEK-----------ALIGFVEMQEDGVSPDNFVLPNVLKACGALGW 197
           +W A+I    ++  S K           AL  F ++    + PD F   ++L  C A+  
Sbjct: 347 TWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMA 406

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           +  G  +H   +K G    V V S+L++MY KCG +E A K F  M  R  V W SMI G
Sbjct: 407 LEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISG 466

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           Y Q+G +++AI++F +M L G  P  ++  S+LSA +    ++E ++   + + N   ++
Sbjct: 467 YSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDM-MRNEYHIE 525

Query: 318 NVLG--SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIV 374
            ++     +++ + ++G L+DA     R   E +   W+ L+A     G  ++       
Sbjct: 526 PLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA------ 579

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
             YA    ++   +V  + +L        LL  Y   GR  + +R+
Sbjct: 580 -FYAADRLLELKPKVIETYVL--------LLNMYISTGRWRDVARV 616


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 305/568 (53%), Gaps = 47/568 (8%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L+  Y +CG + EAR++F+ +  RNVV+WN+M+ GY +NG+ + A  +F  M      
Sbjct: 100 AALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMM------ 153

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS-------SIINFYSKVGL 333
           P R  V+ +   S  +      K+ H   V    EL + + S       ++++ Y ++G 
Sbjct: 154 PWRDDVSWLTMISGYI------KRKH---VREARELFDSMPSPPTSVCNALLSGYVELGY 204

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKC 380
           +  AEV+F +M  R+ V+WN++I  Y ++G             + DV+  ++I+  Y + 
Sbjct: 205 MRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQN 264

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             +D A +VF  +  RD V WNT++  +    R  +A +LF +M       + ISWN+++
Sbjct: 265 GSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP----DRDQISWNAIL 320

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
            G+++ G M+ A   F +  +     + I+W TLISG         A+    EM+  G+K
Sbjct: 321 QGYVQQGDMDSANAWFRRAPN----KDAISWNTLISGYKDEG----ALSLLSEMIRGGLK 372

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P   T++  +S C  + SL  G+ +H + I+        +++SL+ MY+KCG I +A +V
Sbjct: 373 PDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQV 432

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F++   ++   +NAMI+ YA HGLA EAL +F  + + G  PD  TF +IL+AC+H G +
Sbjct: 433 FELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYL 492

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EG   F  M  D  + P  +H+ C+V+LL R G + +A      +P D       +L S
Sbjct: 493 YEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFS 552

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C    E +L E I+ ++L+  P + G Y  LSN YAA   W+  + VR  MKE+GL+K 
Sbjct: 553 VCNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKE 612

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEI 768
            GCSWI++  E+  F + D +HP  E+I
Sbjct: 613 TGCSWIELKGEVVTFSSNDSNHPLIEQI 640



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 105/211 (49%), Gaps = 23/211 (10%)

Query: 110 DFFARNEYVETKLVVF-----------------YAKCDALDVASRLFCRLRVKNVFSWAA 152
           D F RN+ ++  L +F                 Y +   +D A+  F R   K+  SW  
Sbjct: 290 DGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNT 349

Query: 153 II-GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV 211
           +I G        E AL    EM   G+ PD   L  V+  C +L  +G G+ VH + +K 
Sbjct: 350 LISGYK-----DEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKT 404

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
           GF+    V SSLI MY KCG + EA +VF+ ++ R+ V WN+MI  Y  +GL +EA++VF
Sbjct: 405 GFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVF 464

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEG 302
             MT  G  P   +  SILSA A+   L EG
Sbjct: 465 DMMTKAGFRPDHATFLSILSACAHKGYLYEG 495



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 189/444 (42%), Gaps = 64/444 (14%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS   K K +REA +L   M          +   LL G V    M   + +    
Sbjct: 160 SWLTMISGYIKRKHVREARELFDSMP----SPPTSVCNALLSGYVELGYMRAAEVLF--- 212

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
              G    RN      ++  YA+  ++ +A RLF  +  K+V S  AI+    + G  + 
Sbjct: 213 ---GQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDA 269

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A   F +M                        V +   + G+V     D  + + S + D
Sbjct: 270 AWKVFKDMPHRDT-------------------VAWNTMMDGFVRNDRLDDALKLFSEMPD 310

Query: 226 M-----------YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
                       Y + GD++ A   F     ++ ++WN++I GY   G    A+ +  EM
Sbjct: 311 RDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEG----ALSLLSEM 366

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
              G++P + +++ ++S  A+L +L  GK  H  A+  G E D ++ SS+I+ YSK GL+
Sbjct: 367 IRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLI 426

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE-RIDNAKQVFNSI 393
            +A  VF  +++RD VTWN +IA+Y   G +D   A  + DM  K   R D+A   F SI
Sbjct: 427 SEASQVFELILQRDTVTWNAMIATYAYHGLAD--EALKVFDMMTKAGFRPDHA--TFLSI 482

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEA 452
                      L+A A  G   E    F  MQ +  + P    ++ ++    R+G +++A
Sbjct: 483 -----------LSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQA 531

Query: 453 KDMFLQMQSLGVQPNLITWTTLIS 476
            D   ++ S         W TL S
Sbjct: 532 YDFTRRIPS---DHRTTAWETLFS 552



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 13/180 (7%)

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           +A++VFD  P +    + A+++GYA  G   EA  LF  +  + +    +++  +++  +
Sbjct: 83  EARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNV----VSWNAMVSGYA 138

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
             G+V    ELF  M      +  +     +   + R  ++ EA  +  +MP  P + + 
Sbjct: 139 RNGMVKRARELFDMM----PWRDDVSWLTMISGYIKR-KHVREARELFDSMPSPPTS-VC 192

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
            +LLS  V+      AE +     Q++  NP ++  +   YA +G      ++ D M EK
Sbjct: 193 NALLSGYVELGYMRAAEVL---FGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEK 249


>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
          Length = 691

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 204/665 (30%), Positives = 320/665 (48%), Gaps = 80/665 (12%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           LQGC+ + D   G+ +H  +++ G     + +    L+  Y K   L  A RLF R+  +
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           N+ S+  ++  + + G  E A   F  ++ +G   + FVL  +LK   A+   G    VH
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
               K+G D   FV S LID Y  C  + +A  VF+G++ ++ V W +M+  Y +N   E
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
            A RVF +M + G +P   ++TS+L A+  L ++  GK  H  A+               
Sbjct: 246 NAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKT------------- 292

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDN 385
                   L D E                              V  +++DMYAKC  I +
Sbjct: 293 --------LNDTEPH----------------------------VGGALLDMYAKCGDIKD 316

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A+  F  I   DV+L + +++ YA   ++ +A  LF ++    + PN  S +SV+     
Sbjct: 317 ARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTN 376

Query: 446 NGQMNEAK-------------DMF------------------LQMQSLGVQPNLITWTTL 474
             Q++  K             D+F                  L++ S     N ++W T+
Sbjct: 377 MVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTI 436

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           + G +Q+  G EA+  F EM    +  +  T +  L AC   AS+R+   IH  + +   
Sbjct: 437 VVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTF 496

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
              T I  SL+D YAKCG I  A +VF     +++  +NA+ISGYA+HG A +AL LF  
Sbjct: 497 NNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDR 556

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           + +  ++ + ITF  +L+ CS  GLVN GL LF  M  DH +KPSMEH+ C+V LL R G
Sbjct: 557 MNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAG 616

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L++AL+ I  +P  P A +  +LLS+C+      L  + +E +L++EP +   YV LSN
Sbjct: 617 RLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSN 676

Query: 715 AYAAS 719
            YAA+
Sbjct: 677 MYAAA 681



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 244/494 (49%), Gaps = 39/494 (7%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC--VFVASSLIDMYGKCGDLEEARK 238
           D+F     L+ C A G    GRAVHG+V++ G  G   +F A+ L++MYGK G L  AR+
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +FD M  RN+V++ +++  + Q G  E A  +F  +  EG E  +  +T++L  +  +DA
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA 177

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
                  H+ A   G + +  +GS +I+ YS   L+ DAE VF+ +V +D V W  +++ 
Sbjct: 178 AGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQ---VFNSIILRDVVLWNTLLAAYADLGRSG 415
           Y ++         +   +++K  R+   K       S++   V L + +L      G  G
Sbjct: 238 YSEND-----CPENAFRVFSK-MRVSGCKPNPFALTSVLKAAVCLPSVVLGK----GIHG 287

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
            A +      L    P++    +++  + + G + +A+  F  +       ++I  + +I
Sbjct: 288 CAIK-----TLNDTEPHV--GGALLDMYAKCGDIKDARLAFEMIP----YDDVILLSFMI 336

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           S   Q++   +A   F  ++ + + P+  +++  L ACT++  L  G+ IH + I+    
Sbjct: 337 SRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHE 396

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
               +  +L+D YAKC ++  + ++F          +N ++ G++  GL  EAL++F  +
Sbjct: 397 SDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEM 456

Query: 596 QQKGIDPDSITFTNILNACS------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
           Q   +    +T++++L AC+      HAG ++  +E     F++  V  +      +++ 
Sbjct: 457 QAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIE--KSTFNNDTVIGN-----SLIDT 509

Query: 650 LSRCGNLDEALRVI 663
            ++CG + +AL+V 
Sbjct: 510 YAKCGYIRDALKVF 523



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 144/295 (48%), Gaps = 17/295 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILKN 108
           IS  ++  Q  +A +L   ++     + P  Y    +LQ C     +  G+QIH   +K 
Sbjct: 336 ISRYAQSNQNEQAFELF--LRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKI 393

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G     + +V   L+ FYAKC+ +D + ++F  LR  N  SW  I+    + GL E+AL 
Sbjct: 394 GH--ESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALS 451

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F EMQ   +        +VL+AC +   +     +H  + K  F+    + +SLID Y 
Sbjct: 452 VFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYA 511

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG + +A KVF  ++ R++++WN++I GY  +G   +A+ +F  M    VE   ++  +
Sbjct: 512 KCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVA 571

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSS------IINFYSKVGLLEDA 337
           +LS  ++      G   H +++ + M +D+ +  S      I+    + G L DA
Sbjct: 572 LLSVCSS-----TGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDA 621



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 20/239 (8%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA+ +  EM+          Y  +L+ C     +    QIH  I K+   F  +  +   
Sbjct: 448 EALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKST--FNNDTVIGNS 505

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  YAKC  +  A ++F  L  +++ SW AII      G +  AL  F  M +  V  +
Sbjct: 506 LIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESN 565

Query: 182 NFVLPNVLKACGALGWVGFG-------RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLE 234
           +     +L  C + G V  G       R  HG    +    C+      + + G+ G L 
Sbjct: 566 DITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCI------VRLLGRAGRLN 619

Query: 235 EARKVFDGMI--ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291
           +A + F G I  A + + W +++   + +  N    R   E  LE +EP   +   +LS
Sbjct: 620 DALQ-FIGDIPSAPSAMVWRALLSSCIIHK-NVALGRFSAEKILE-IEPQDETTYVLLS 675


>gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial; Flags: Precursor
 gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 695

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 214/730 (29%), Positives = 357/730 (48%), Gaps = 112/730 (15%)

Query: 69  EMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK 128
           E+ CR +      Y  LLQ C  +      +Q +  +LK G F +    V   L+  Y++
Sbjct: 22  EVDCRRY------YVRLLQSCSSRNRETLWRQTNGLLLKKG-FLSSIVIVANHLLQMYSR 74

Query: 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF-VLPN 187
              + +A  LF  +  +N FSW  +I              G++   E G S   F ++P 
Sbjct: 75  SGKMGIARNLFDEMPDRNYFSWNTMIE-------------GYMNSGEKGTSLRFFDMMPE 121

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
                             GY   V   G           + K G+L  AR++F+ M  ++
Sbjct: 122 R----------------DGYSWNVVVSG-----------FAKAGELSVARRLFNAMPEKD 154

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           VV  NS++ GY+ NG  EEA+R+F E+         +++T++L A A L+AL  GKQ HA
Sbjct: 155 VVTLNSLLHGYILNGYAEEALRLFKELNFSA---DAITLTTVLKACAELEALKCGKQIHA 211

Query: 308 VAVINGMELDNVLGSSIINFYSKVGLLE-------------------------------D 336
             +I G+E D+ + SS++N Y+K G L                                +
Sbjct: 212 QILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNE 271

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG----------------QSDVVVASSIVDMYAKC 380
           +  +F R   R ++ WN +I+ Y+ +                 + D    +++++     
Sbjct: 272 SRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNETREDSRTLAAVINACIGL 331

Query: 381 ERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
             ++  KQ+        ++ D+V+ +TLL  Y+  G   EA +LF +++    S + I  
Sbjct: 332 GFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVE----SYDTILL 387

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           NS+I  +   G++++AK +F ++++     +LI+W ++ +G +QN C  E + +F +M +
Sbjct: 388 NSMIKVYFSCGRIDDAKRVFERIEN----KSLISWNSMTNGFSQNGCTVETLEYFHQMHK 443

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
             +     +++  +SAC  ++SL  G  +        L     + +SL+D+Y KCG +  
Sbjct: 444 LDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEH 503

Query: 557 AKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
            +RVFD +  S E+P +N+MISGYA +G   EA+ LFK +   GI P  ITF  +L AC+
Sbjct: 504 GRRVFDTMVKSDEVP-WNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACN 562

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           + GLV EG +LF  M  DH   P  EHF C+V+LL+R G ++EA+ ++  MP D D  + 
Sbjct: 563 YCGLVEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMW 622

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
            S+L  CV +    + +  +E +++LEP+N   YV LS  +A SG W   + VR +M+E 
Sbjct: 623 SSILRGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMREN 682

Query: 736 GLRKNPGCSW 745
            + KNPG SW
Sbjct: 683 NVTKNPGSSW 692


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 185/584 (31%), Positives = 295/584 (50%), Gaps = 96/584 (16%)

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
           P +L +C  L  +     +H  ++  GF     + + LI++Y      + AR VFD    
Sbjct: 56  PRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPN 111

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
            + + WNSMI  Y ++    EA+ ++Y M  +G                           
Sbjct: 112 PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG--------------------------- 144

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
                  G+E D  +G+ +++ YSK+G L+ A  VF +M +RD+V WN +IA   QS   
Sbjct: 145 -------GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDP 197

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
            V                  A++VF+ ++ +D V W T++A YA  G   E   LF +M+
Sbjct: 198 YV------------------ARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMK 239

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
           L       ++WN +I  +++NG   EA   F QM+     PN +T+ ++           
Sbjct: 240 LGN-----VTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSV----------- 283

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
                                   L A   +A+ R G A H  +I+      T +  SL+
Sbjct: 284 ------------------------LPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLI 319

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           DMYAKCG +  ++++F+    K+   +NAM+SGYA+HG    A+ALF  +Q+  +  DS+
Sbjct: 320 DMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 379

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           +F ++L+AC HAGLV EG ++F  M   + +KP +EH+ C+V+LL R G  DE L  I  
Sbjct: 380 SFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKV 439

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MP +PDA + G+LL +C   +  +L E   +HL++LEP NP ++V LS+ YA SGRW + 
Sbjct: 440 MPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADA 499

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
            + R  M + GL+K PGCSW+++  ++H F   D+SHP+ E ++
Sbjct: 500 GKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMH 543



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 183/463 (39%), Gaps = 119/463 (25%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  LL  C +   +    QIHA+I+ +G    ++ +  T L+  Y+     D+A  +F  
Sbjct: 55  YPRLLSSCKHLNPLL---QIHAQIIVSG---FKHHHSITHLINLYSLFHKCDLARSVFDS 108

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
               +   W ++I    R     +AL  +  M E G                        
Sbjct: 109 TPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG------------------------ 144

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI------ 255
                     G +  VF+ + L+DMY K GDL+ AR+VFD M  R+VVAWN+MI      
Sbjct: 145 ----------GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQS 194

Query: 256 -------------------------VGYVQNGLNEEAIRVFYEMTL-------------- 276
                                     GY  NG   E + +F +M L              
Sbjct: 195 EDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQ 254

Query: 277 ----------------EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
                           E   P  V+  S+L A+A L A  EG   HA  +  G   + ++
Sbjct: 255 NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 314

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G+S+I+ Y+K G L+ +E +F+ M  +D V+WN +++ Y   G  D  +A     +++  
Sbjct: 315 GNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIA-----LFSLM 369

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSV 439
           +          S +  D V + ++L+A    G   E  ++F+ M  +  I P++  +  +
Sbjct: 370 QE---------SQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACM 420

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
           +    R G  +E       ++ + V+P+   W  L+     +S
Sbjct: 421 VDLLGRAGLFDETLGF---IKVMPVEPDAGVWGALLGSCRMHS 460



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 171/377 (45%), Gaps = 28/377 (7%)

Query: 55  SKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFAR 114
           SK   ++ A ++  +M  R+       +  ++ G     D Y  +++  +++   D    
Sbjct: 161 SKMGDLKRAREVFDKMPKRDVVA----WNAMIAGLSQSEDPYVARRVFDQMVDQDDV--- 213

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ 174
                  ++  YA          LF ++++ NV +W  II    + G +++A+  F +M+
Sbjct: 214 ---SWGTMMAGYAHNGCFVEVLELFDKMKLGNV-TWNVIIAAYMQNGHAKEAISSFHQMR 269

Query: 175 EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLE 234
            +   P++    +VL A   L     G A H  ++++GF     V +SLIDMY KCG L+
Sbjct: 270 LENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLD 329

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
            + K+F+ M  ++ V+WN+M+ GY  +G  + AI +F  M    V+   VS  S+LSA  
Sbjct: 330 YSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACR 389

Query: 295 NLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTW 352
           +   ++EG++  H+++    ++ D    + +++   + GL ++       M VE D   W
Sbjct: 390 HAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVW 449

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
             L+ S      S+V +    +D   K E  + A  V  S I             YA  G
Sbjct: 450 GALLGSCRM--HSNVKLGEVALDHLVKLEPRNPAHFVVLSSI-------------YAQSG 494

Query: 413 RSGEASRLFYQMQLEGI 429
           R  +A +   +M   G+
Sbjct: 495 RWADAGKARSKMNDLGL 511


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 213/721 (29%), Positives = 349/721 (48%), Gaps = 125/721 (17%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCV-FVASSLIDMYGKCGDLEEARK 238
           D F LP   K+  AL  +   R++HG  L+    DG    V+++L+  Y +CGDL  A  
Sbjct: 56  DRFALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALA 115

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL-D 297
           +FD M +R+ V +NS+I           A+    +M LEG   T  ++ S+L A ++L +
Sbjct: 116 LFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAE 175

Query: 298 ALDEGKQAHAVAVING-MELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDI-----V 350
            L  G++AHA A+ NG ++ D     +++++ Y+++GL++DA+ +F  +   D+     V
Sbjct: 176 DLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVV 235

Query: 351 TWNLLIASYVQSGQ---------------------------------------------- 364
           TWN +++  VQSG+                                              
Sbjct: 236 TWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYV 295

Query: 365 -------SDVVVASSIVDMYAKCERIDNAKQVFNSIIL--RDVVLWNTLLAAYADLGRSG 415
                  ++  VAS++VDMYA  ER+  A+ VF+ +    R + LWN ++  YA  G   
Sbjct: 296 LKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDE 355

Query: 416 EASRLFYQMQLE------------------------------------GISPNIISWNSV 439
           +A  LF +M+ E                                    G++ N    N++
Sbjct: 356 DALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNAL 415

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG- 498
           +  + R G M+ A+ +F  ++      ++++W TLI+G        +A    +EM + G 
Sbjct: 416 MDLYARLGDMDAARWIFATIEPR----DVVSWNTLITGCVVQGHIRDAFQLVREMQQQGR 471

Query: 499 -----------------IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541
                            + P+  T+   L  C  +A+   G+ IHGY +RH L     + 
Sbjct: 472 FTDAATEDGIAGADEEPVVPNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVG 531

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL-QQKGI 600
           ++LVDMYAKCG +  ++ VFD  P + +  +N +I  Y MHGL  EA+ALF  +      
Sbjct: 532 SALVDMYAKCGCLALSRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEA 591

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
            P+ +TF   L ACSH+G+V+ GLE+F  M  +H V+P+ +   C V++L R G LDEA 
Sbjct: 592 KPNEVTFIAALAACSHSGMVDRGLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAY 651

Query: 661 RVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
           R+I +M P +       S L  C       L E  +E L +LEPD   +YV L N Y+A+
Sbjct: 652 RIISSMEPGEQQVSAWSSFLGACRLHRNVALGEIAAERLFELEPDEASHYVLLCNIYSAA 711

Query: 720 GRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           G W + S+VR  M+++G+ K PGCSWI++   +H F+A + +HP++  ++A +  L   +
Sbjct: 712 GLWEKSSEVRSRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERM 771

Query: 780 R 780
           R
Sbjct: 772 R 772



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 149/320 (46%), Gaps = 25/320 (7%)

Query: 62  EAVDLLTEMKCRNFQIGPEI-YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           +A++L   M+     +  E     +L  C         + +H  ++K G   A N +V+ 
Sbjct: 356 DALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRG--MADNPFVQN 413

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ------ 174
            L+  YA+   +D A  +F  +  ++V SW  +I      G    A     EMQ      
Sbjct: 414 ALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFT 473

Query: 175 ----EDGVS--------PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
               EDG++        P+N  L  +L  C  L     G+ +HGY ++   D  V V S+
Sbjct: 474 DAATEDGIAGADEEPVVPNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSA 533

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL-EGVEP 281
           L+DMY KCG L  +R VFD +  RNV+ WN +I+ Y  +GL +EAI +F  M   +  +P
Sbjct: 534 LVDMYAKCGCLALSRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKP 593

Query: 282 TRVSVTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
             V+  + L+A ++   +D G +   ++   +G+E    L +  ++   + G L++A  +
Sbjct: 594 NEVTFIAALAACSHSGMVDRGLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRI 653

Query: 341 FSRMV--ERDIVTWNLLIAS 358
            S M   E+ +  W+  + +
Sbjct: 654 ISSMEPGEQQVSAWSSFLGA 673


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/504 (34%), Positives = 278/504 (55%), Gaps = 28/504 (5%)

Query: 281 PTRVSVT-SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           P R S T S L  + +   +   +  H+  V  G   D  +G+++I+ YSK G   DA  
Sbjct: 2   PRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 61

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
           VF  M ERD+V+WN  +A+ V+ G+                  +   +++F+ +  +D V
Sbjct: 62  VFDEMPERDVVSWNTAMAAMVREGE------------------LAGVRKLFDEMPEKDTV 103

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
            WNT+L  Y   G    A  LF +M       N++SW++++ G+ + G +  A+ +F +M
Sbjct: 104 SWNTILDGYTKAGEVEAAFELFQRMP----ERNVVSWSTMVSGYCKKGDLEMARVIFDKM 159

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
            S     NL+TWT ++S   Q    +EA   F +M E  ++     +   L+AC +  SL
Sbjct: 160 PS----KNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSL 215

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISG 578
             G+ IH Y+ + +L   T +  +L+DM+ KCG +++A  VFD    ++  V +N++I G
Sbjct: 216 SLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGG 275

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           +AMHG   +AL LF  ++Q+G +PD++T  N+L+AC+H G V+EG   F  M  D+ + P
Sbjct: 276 FAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMP 335

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
            +EH+GC+++LL R G + EA+ +I +MP +P+  I GSLLS C      E AE     L
Sbjct: 336 QIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNEL 395

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
            +L+P N GNY  LSN YA +G+W+++++ R  MK  G +K  G SW+++ E  H F   
Sbjct: 396 SKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVG 455

Query: 759 DRSHPKTEEIYATLALLGMHVRLV 782
           DR H  +++I   +  L  HV+ V
Sbjct: 456 DRKHQDSDQISEMVDRLSSHVKHV 479



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 165/350 (47%), Gaps = 30/350 (8%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D+F    ++KA  A G V   RAVH +V+K+G     FV ++LID Y K G   +ARKVF
Sbjct: 5   DSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVF 63

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D M  R+VV+WN+ +   V+ G      ++F EM     E   VS  +IL          
Sbjct: 64  DEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMP----EKDTVSWNTILDGYTKA---- 115

Query: 301 EGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
            G+   A  +   M   NV+  S++++ Y K G LE A V+F +M  +++VTW +++++ 
Sbjct: 116 -GEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSAC 174

Query: 360 VQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            Q G                 + DV    SI+   A+   +   K++   +  R++    
Sbjct: 175 AQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRST 234

Query: 403 TLLAAYADL-GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
            +  A  D+  + G  +R  Y    E +  + +SWNS+I GF  +G  ++A ++F QM+ 
Sbjct: 235 HVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQ 294

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCAL 510
            G  P+ +T   ++S  T     +E    F  M  + GI P      C +
Sbjct: 295 QGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI 344



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 176/381 (46%), Gaps = 31/381 (8%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           + +H+ ++K G     + +V   L+  Y+K      A ++F  +  ++V SW   +    
Sbjct: 25  RAVHSHVVKLGS--VEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMV 82

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL-KVGFDGCV 217
           R G        F EM E      N +L    KA         G     + L +   +  V
Sbjct: 83  REGELAGVRKLFDEMPEKDTVSWNTILDGYTKA---------GEVEAAFELFQRMPERNV 133

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
              S+++  Y K GDLE AR +FD M ++N+V W  M+    Q GL +EA ++F +M   
Sbjct: 134 VSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEA 193

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            VE    +V SIL+A A   +L  GK+ H       +     + +++I+ + K G +  A
Sbjct: 194 SVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRA 253

Query: 338 EVVF-SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           + VF +  V++D V+WN +I  +   G  D       ++++A+ +     +Q FN     
Sbjct: 254 DYVFDTETVQKDSVSWNSIIGGFAMHGHGD-----KALELFAQMK-----QQGFNP---- 299

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDM 455
           D V    +L+A   +G   E  R F  M+ + GI P I  +  +I    R G + EA D+
Sbjct: 300 DAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDL 359

Query: 456 FLQMQSLGVQPNLITWTTLIS 476
              ++S+  +PN + W +L+S
Sbjct: 360 ---IKSMPWEPNEVIWGSLLS 377



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 25/232 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+ +++  + EA  L  +MK  + ++       +L  C     +  G++IH  + K   
Sbjct: 171 VSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRN- 229

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRV-KNVFSWAAIIGLNCRVGLSEKALIG 169
              R+ +V   L+  + KC  ++ A  +F    V K+  SW +IIG     G  +KAL  
Sbjct: 230 -LGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALEL 288

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR-------AVHGYVLKVGFDGCVFVASS 222
           F +M++ G +PD   + NVL AC  +G+V  GR         +G + ++   GC      
Sbjct: 289 FAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGC------ 342

Query: 223 LIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI--------VGYVQNGLNE 265
           +ID+ G+ G ++EA  +   M    N V W S++        V Y +  +NE
Sbjct: 343 MIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNE 394


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 304/568 (53%), Gaps = 47/568 (8%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L+  Y +CG + EAR++F+ +  RNVV+WN+M+ GY +NG+ + A  +F  M      
Sbjct: 100 AALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMM------ 153

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS-------SIINFYSKVGL 333
           P R  V+ +   S  +      K+ H   V    EL + + S       ++++ Y ++G 
Sbjct: 154 PWRDDVSWLTMISGYI------KRKH---VREARELFDSMPSPPTSVCNALLSGYVELGY 204

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKC 380
           +  AEV+F +M  R+ V+WN++I  Y ++G             + DV+  ++I+  Y + 
Sbjct: 205 MRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQN 264

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             +D A +VF  +  RD V WNT++  +    R  +A +LF +M       + ISWN+++
Sbjct: 265 GSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP----DRDQISWNAIL 320

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
            G+++ G M+ A   F +        + I+W TLISG         A+    EM+  G+K
Sbjct: 321 QGYVQQGDMDSANAWFRR----APNKDAISWNTLISGYKDEG----ALSLLSEMIRGGLK 372

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P   T++  +S C  + SL  G+ +H + I+        +++SL+ MY+KCG I +A +V
Sbjct: 373 PDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQV 432

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F++   ++   +NAMI+ YA HGLA EAL +F  + + G  PD  TF +IL+AC+H G +
Sbjct: 433 FELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYL 492

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EG   F  M  D  + P  +H+ C+V+LL R G + +A      +P D       +L S
Sbjct: 493 YEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFS 552

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C    E +L E I+ ++L+  P + G Y  LSN YAA   W+  + VR  MKE+GL+K 
Sbjct: 553 VCNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKE 612

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEI 768
            GCSWI++  E+  F + D +HP  E+I
Sbjct: 613 TGCSWIELKGEVVTFSSNDSNHPLIEQI 640



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 105/211 (49%), Gaps = 23/211 (10%)

Query: 110 DFFARNEYVETKLVVF-----------------YAKCDALDVASRLFCRLRVKNVFSWAA 152
           D F RN+ ++  L +F                 Y +   +D A+  F R   K+  SW  
Sbjct: 290 DGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNT 349

Query: 153 II-GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV 211
           +I G        E AL    EM   G+ PD   L  V+  C +L  +G G+ VH + +K 
Sbjct: 350 LISGYK-----DEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKT 404

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
           GF+    V SSLI MY KCG + EA +VF+ ++ R+ V WN+MI  Y  +GL +EA++VF
Sbjct: 405 GFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVF 464

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEG 302
             MT  G  P   +  SILSA A+   L EG
Sbjct: 465 DMMTKAGFRPDHATFLSILSACAHKGYLYEG 495



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 189/444 (42%), Gaps = 64/444 (14%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS   K K +REA +L   M          +   LL G V    M   + +    
Sbjct: 160 SWLTMISGYIKRKHVREARELFDSMP----SPPTSVCNALLSGYVELGYMRAAEVLF--- 212

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
              G    RN      ++  YA+  ++ +A RLF  +  K+V S  AI+    + G  + 
Sbjct: 213 ---GQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDA 269

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A   F +M                        V +   + G+V     D  + + S + D
Sbjct: 270 AWKVFKDMPHRDT-------------------VAWNTMMDGFVRNDRLDDALKLFSEMPD 310

Query: 226 M-----------YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
                       Y + GD++ A   F     ++ ++WN++I GY   G    A+ +  EM
Sbjct: 311 RDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEG----ALSLLSEM 366

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
              G++P + +++ ++S  A+L +L  GK  H  A+  G E D ++ SS+I+ YSK GL+
Sbjct: 367 IRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLI 426

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE-RIDNAKQVFNSI 393
            +A  VF  +++RD VTWN +IA+Y   G +D   A  + DM  K   R D+A   F SI
Sbjct: 427 SEASQVFELILQRDTVTWNAMIATYAYHGLAD--EALKVFDMMTKAGFRPDHA--TFLSI 482

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEA 452
                      L+A A  G   E    F  MQ +  + P    ++ ++    R+G +++A
Sbjct: 483 -----------LSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQA 531

Query: 453 KDMFLQMQSLGVQPNLITWTTLIS 476
            D   ++ S         W TL S
Sbjct: 532 YDFTRRIPS---DHRTTAWETLFS 552



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 13/182 (7%)

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           + +A++VFD  P +    + A+++GYA  G   EA  LF  +  + +    +++  +++ 
Sbjct: 81  LAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNV----VSWNAMVSG 136

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
            +  G+V    ELF  M      +  +     +   + R  ++ EA  +  +MP  P + 
Sbjct: 137 YARNGMVKRARELFDMM----PWRDDVSWLTMISGYIKR-KHVREARELFDSMPSPPTS- 190

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           +  +LLS  V+      AE +     Q++  NP ++  +   YA +G      ++ D M 
Sbjct: 191 VCNALLSGYVELGYMRAAEVL---FGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMP 247

Query: 734 EK 735
           EK
Sbjct: 248 EK 249


>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
          Length = 648

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 204/674 (30%), Positives = 337/674 (50%), Gaps = 78/674 (11%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDV----ASRLFCRLRVKNVFSWAAIIG 155
           QIHA+ + +G     + +  ++L++F      L +    + RL   +   N FS   ++ 
Sbjct: 22  QIHAQFVASG--LLADAFAASRLILFTTSTRLLPLPFHHSLRLLHVVHRPNAFSCNMVLK 79

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
                GL    L  +  M     +PD +    +  AC     +  GR VH + ++ GF  
Sbjct: 80  AAREHGLPHLCLPLYASMS---AAPDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGR 136

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            +++A++L+ MY  CG L +ARKVFD     + V+WN+++  YVQ    ++A+ VF  M 
Sbjct: 137 NLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMP 196

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
             G                            A AV           SS+++ + + G+++
Sbjct: 197 ERG----------------------------AAAV-----------SSMVSLFGRRGMVD 217

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQ--------SDV------VVASSIVDMYAKCE 381
           +A  VF  +  +D+ TW  +I+ + ++G+        SD+      V  + +V + A C 
Sbjct: 218 EARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACA 277

Query: 382 RIDNAKQ-------VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
           R++  +         F + +   + + N L+  Y+       A RLF      G   +  
Sbjct: 278 RLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDS----GQCLDQF 333

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           SWNS+I G+L+NG + +AK++F  M       + ++WTT+ISG  QN   +EA+  F  M
Sbjct: 334 SWNSMIAGYLKNGSVKDAKELFTVMP----DKDNVSWTTMISGCVQNDQSSEALTIFNNM 389

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
              GIKP   T+   +SACT+++SL  G+++H Y+  H   +   + TSL+DMY KCG +
Sbjct: 390 QAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCL 449

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPDSITFTNILNA 613
             A  VFD    +  P +NA+I G AM+GL +++L +F  ++      P+ ITFT +L+A
Sbjct: 450 ESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSA 509

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           C HAGLV EG   F  M   + + P++ H+GC+V+LL R G + EA  +I +MP  PD  
Sbjct: 510 CRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVP 569

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
             G+LL +C K  + E+ E +   L+ L+P + G +  LSN YA+ G W  V  +R  MK
Sbjct: 570 AWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMK 629

Query: 734 EKGLRKNPGCSWIQ 747
           +  + K PG S ++
Sbjct: 630 QWHVPKIPGSSVVE 643



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 129/554 (23%), Positives = 228/554 (41%), Gaps = 119/554 (21%)

Query: 78  GPEIYGE--LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVA 135
            P+ Y    L   C  +R +  G+Q+H   +++G  F RN Y+   L+  Y+ C  L  A
Sbjct: 100 APDCYTHTILAAACATRRAIEEGRQVHCHAVRHG--FGRNLYLANALMSMYSACGCLGDA 157

Query: 136 SRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
            ++F    V +  SW  I+    +    ++A+  F  M E G +                
Sbjct: 158 RKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAA---------------- 201

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
                                    SS++ ++G+ G ++EARKVFDG+  ++V  W +MI
Sbjct: 202 -----------------------AVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMI 238

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
             + +NG   EA+ +F +M  EG       +  +++A A L+    G+  H +A   G+ 
Sbjct: 239 SCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLG 298

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVD 375
               + +++I+ YS    +  A  +F      D  +WN +IA Y+++G            
Sbjct: 299 SRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGS----------- 347

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
                  + +AK++F  +  +D V W T+++      +S EA  +F  MQ +GI P+ ++
Sbjct: 348 -------VKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVT 400

Query: 436 WNS-----------------------------VILG------FLRNGQMNEAKDMFLQMQ 460
             S                             VILG      +++ G +  A ++F  M+
Sbjct: 401 LVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTME 460

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI-KPSTTTITCALSACTDVASL 519
             G       W  +I GL  N    +++  F EM  +    P+  T T  LSAC     +
Sbjct: 461 ERGTP----CWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLV 516

Query: 520 RNGRAI-----HGYL----IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKEL 569
             G+       H Y     IRH  C        +VD+  + G + +A+ + +  P S ++
Sbjct: 517 EEGQHFFKLMQHKYHIIPNIRHYGC--------MVDLLGRAGYVKEAENLIESMPMSPDV 568

Query: 570 PVYNAMISGYAMHG 583
           P + A++     HG
Sbjct: 569 PAWGALLGSCWKHG 582


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 201/651 (30%), Positives = 322/651 (49%), Gaps = 89/651 (13%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVF---VASSLIDMYGKCGDLEEARKVFDGM 243
           ++L+ C +   +   + +H + + +G     +   + SSL   Y   G    ARK+FD +
Sbjct: 23  SLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDEL 82

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE-PTRVSVTSILSASANLDALDEG 302
              ++ +WN+MI  Y  +GL+ +A+ +F +M   G   P   +   ++ A  +    + G
Sbjct: 83  RNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMG 142

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY--- 359
              HA  V++G + D  + +S++  Y   G +E A  VF  M ER +V+WN +I  Y   
Sbjct: 143 ALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKN 202

Query: 360 -------------------------------------------------VQSGQSDVVVA 370
                                                            V++   D+ V 
Sbjct: 203 GCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVW 262

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           +S++DMYAKC  +D A+ +F  +  RDVV W T++  Y   G +  A  L   MQ E + 
Sbjct: 263 NSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVK 322

Query: 431 PNIISWNSVI-----LGFLRNG---------QMNEAK--------DMFLQMQSLGVQPNL 468
           PN ++  SV+     L  L++G         Q  E++        DM+ +  ++ +   +
Sbjct: 323 PNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRV 382

Query: 469 IT---------WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
            +         W  +ISG   N    +AI  F++ML   + P+  T+   L A   +  L
Sbjct: 383 FSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDL 442

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV--YNAMIS 577
           +  R +HGYLIR        + T L+D+Y+KCG++  A  +F+  P K+  +  ++A+I+
Sbjct: 443 QQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIA 502

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
           GY MHG    A++LF  + Q G+ P+ ITFT+IL+ACSHAGLV+EGL LF  M  D+Q+ 
Sbjct: 503 GYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMS 562

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
              +H+ CV++LL R G L+EA  +I TM   P+  + G+LL +CV     EL E  ++ 
Sbjct: 563 LRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKW 622

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           L +LEP N GNYV L+N Y+A GRW +   VR +M   GLRK P  S I++
Sbjct: 623 LFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEV 673


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 198/678 (29%), Positives = 337/678 (49%), Gaps = 102/678 (15%)

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD------------------ 241
             RAVHG ++  GF     + + LID+Y K  +L+ AR++FD                  
Sbjct: 32  LARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYC 91

Query: 242 --GMIA-------------RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
             G IA             R+ V +N+MI G+  N     AI +F +M  EG +P   + 
Sbjct: 92  ASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTY 151

Query: 287 TSILSASANLDALDEGKQA---HAVAVINGMELDNVLGSSIINFYSKVG----LLEDAEV 339
            S+L+  A +  +D+ KQ    HA A+ +G      + +++++ YS+      LL  A  
Sbjct: 152 ASVLAGLALV--VDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARK 209

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQSDV--------------VVASSIVDMYAKCERIDN 385
           VF  + E+D  +W  ++  YV++G  D+              V  ++++  Y  C     
Sbjct: 210 VFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQE 269

Query: 386 A-----------------------------------KQVFNSIILRDVVLW---NTLLAA 407
           A                                   KQV   ++ R+   +   N+L+  
Sbjct: 270 ALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDNSLVTL 329

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
           Y   G+  EA  +F +M     + +++SWN+++ G++ +G + EAK +F +M+    + N
Sbjct: 330 YYKCGKFNEARAIFEKMP----AKDLVSWNALLSGYVSSGHIGEAKLIFKEMK----EKN 381

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
           +++W  +ISGL +N  G E +  F  M   G +P     + A+ +C  + +  NG+  H 
Sbjct: 382 ILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHA 441

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
            L++           +L+ MYAKCG + +A++VF   P  +   +NA+I+    HG  VE
Sbjct: 442 QLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVE 501

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVV 647
           A+ +++ + +KGI PD ITF  +L ACSHAGLV++G + F  M + +++ P  +H+  ++
Sbjct: 502 AVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLI 561

Query: 648 NLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707
           +LL R G   EA  +I ++P  P A I  +LLS C      EL    ++ L  L P++ G
Sbjct: 562 DLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDG 621

Query: 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEE 767
            Y+ LSN YAA+G+W EV++VR +M+++G++K   CSWI++  ++H F+  D SHP+ E 
Sbjct: 622 TYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEA 681

Query: 768 IYATLALLGMHVRLVSKV 785
           +Y  L  LG  +R +  V
Sbjct: 682 VYKYLQDLGKEMRRLGYV 699



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 130/502 (25%), Positives = 214/502 (42%), Gaps = 93/502 (18%)

Query: 47  YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQG-CVYKRDMYTGQQIHARI 105
           Y   I+  S       A++L  +MK   F+     Y  +L G  +   D     Q HA  
Sbjct: 116 YNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAA 175

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDA----LDVASRLFCRLRVKNVFSWAAIIG------ 155
           LK+G  +  +  V   LV  Y++C +    L  A ++F  +  K+  SW  ++       
Sbjct: 176 LKSGAGYVTS--VSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNG 233

Query: 156 ----------------------------LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPN 187
                                       +NC  GL ++AL     M   G+  D F  P+
Sbjct: 234 CFDLGKELLKGMDENMKLVAYNAMISGYVNC--GLYQEALEMVRRMVSSGIELDEFTYPS 291

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           V++AC     +  G+ VH YVL+   D      +SL+ +Y KCG   EAR +F+ M A++
Sbjct: 292 VIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKD 350

Query: 248 VVAWNSMIVGYV-------------------------------QNGLNEEAIRVFYEMTL 276
           +V+WN+++ GYV                               +NG  EE +++F  M  
Sbjct: 351 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 410

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           EG EP   + +  + + A L A   G+Q HA  V  G +     G+++I  Y+K G++E+
Sbjct: 411 EGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEE 470

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           A+ VF  M   D V+WN LIA+  Q G                 E +D  +++    I  
Sbjct: 471 AQQVFRTMPCLDSVSWNALIAALGQHGHG--------------VEAVDVYEEMLKKGIRP 516

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWNSVILGFLRNGQMNEAKDM 455
           D + + T+L A +  G   +  + F  M+ +  I P    +  +I    R+G+ +EA+ +
Sbjct: 517 DRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESI 576

Query: 456 FLQMQSLGVQPNLITWTTLISG 477
              ++SL  +P    W  L+SG
Sbjct: 577 ---IESLPFKPTAEIWEALLSG 595



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS L++     E + L + MK   F+     +   ++ C        GQQ HA++
Sbjct: 384 SWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQL 443

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K G  F  +      L+  YAKC  ++ A ++F  +   +  SW A+I    + G   +
Sbjct: 444 VKIG--FDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVE 501

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHG-----YVLKVGFDGCVFVA 220
           A+  + EM + G+ PD      VL AC   G V  GR         Y +  G D      
Sbjct: 502 AVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADH----Y 557

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVA-WNSMIVGYVQNGLNEEAI 268
           + LID+  + G   EA  + + +  +     W +++ G   +G  E  I
Sbjct: 558 ARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGI 606



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 117/299 (39%), Gaps = 75/299 (25%)

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD--ISPSK-------- 567
           SL+  RA+HG +I         I+  L+D+Y K   +  A+++FD    P K        
Sbjct: 29  SLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVS 88

Query: 568 ----------------ELPV-------YNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
                           E PV       YNAMI+G++ +     A+ LF  ++ +G  PD 
Sbjct: 89  GYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDD 148

Query: 605 ITFTNILNACSHAGLVNEGLELFVG------MFSDHQVKPSMEHFGCVVNLL----SRCG 654
            T+ ++L           GL L V        F    +K    +   V N L    SRC 
Sbjct: 149 FTYASVL----------AGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCA 198

Query: 655 N----LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG--N 708
           +    L  A +V   +P + D     ++++  VK+   +L     + LL+   +N     
Sbjct: 199 SSPSLLHSARKVFDDIP-EKDERSWTTMMTGYVKNGCFDLG----KELLKGMDENMKLVA 253

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKG-----------LRKNPGCSWIQIGEELHVFV 756
           Y A+ + Y   G + E  ++   M   G           +R       +Q+G+++H +V
Sbjct: 254 YNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYV 312


>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 681

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 218/719 (30%), Positives = 349/719 (48%), Gaps = 104/719 (14%)

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA-LDVASRLFCR 141
             LLQ       ++ G+Q+H   LK G        +  +L+  YA+C   +  A  LF  
Sbjct: 9   ARLLQSLNTHSSIHQGKQLHLLFLKKG-LINATVSLANRLLQMYARCGGTMTDAHNLFDE 67

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  +N FSW  +I    RVG  E++L  F  M +      N V+             GF 
Sbjct: 68  MPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQKNDYSWNVVIS------------GFA 115

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           +A                           G+L+ A+K+F+ M  RN VAWNSMI GY +N
Sbjct: 116 KA---------------------------GELDVAKKLFNEMPRRNGVAWNSMIHGYARN 148

Query: 262 GLNEEAIRVFYEMTLEGVEPT---RVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           G   EA+ +F E+    +E +      + S++ A A+L A++ GKQ HA  +++ +ELD+
Sbjct: 149 GFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLGAIEYGKQVHARILMDDVELDS 208

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERD------------------------------ 348
           VL SS+IN Y+K G L+ A  V   M E D                              
Sbjct: 209 VLISSLINLYAKCGHLDTANYVLKMMDEVDDFSLSALIMGYANCGRMSDAVRIFRTKSNP 268

Query: 349 -IVTWNLLIASYVQSGQSDVVVA--------------SSIVDMYAKCERIDNA---KQVF 390
             V WN LI+ YV + +     A              S+I  + + C    NA   KQ+ 
Sbjct: 269 CFVVWNSLISGYVNNHEEMKAFALVNEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMH 328

Query: 391 NSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
             +    ++  V++ +  + AY+      +A +LF +++    + + +  NS+I  +   
Sbjct: 329 GYVCKVGLIDSVIVASAFIDAYSKCRNPNDACKLFSELK----AYDTVLLNSMITAYCNC 384

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G++ +AK++F  M S     +LI+W ++I GL QN+   EA+  F +M +  ++    ++
Sbjct: 385 GRIRDAKNIFETMPS----KSLISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSL 440

Query: 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566
              +SAC  ++SL  G  +    I   L     + TSLVD Y KCG I   +++FD    
Sbjct: 441 ASVISACACISSLELGEQVFARAIITGLESDQAVSTSLVDFYCKCGFIENGRKLFDSMIK 500

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
            +   +N+M+ GYA +G  +E L LF  ++Q G+ P  ITFT +L+AC H GLV EG + 
Sbjct: 501 TDEVSWNSMLMGYATNGYGLETLTLFNEMKQAGLRPTDITFTGVLSACDHCGLVEEGRKW 560

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  M  D+ + P +EH+ C+V+L +R G L EAL ++  MP + D  +  S+L  CV   
Sbjct: 561 FNIMKYDYHIDPGIEHYSCMVDLFARAGCLKEALNLVEHMPFEADCSMWSSVLRGCVAHG 620

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
           + +L + +++ ++QL P++   YV LS  +A SG W   + VR IM EK ++K+PG SW
Sbjct: 621 DKDLGKKVAQQIIQLNPESSSAYVQLSGIFATSGDWESSALVRKIMTEKQVKKHPGFSW 679



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 166/371 (44%), Gaps = 57/371 (15%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS      +  +A  L+ EMK    Q+       +L  C    +    +Q+H  + K G 
Sbjct: 277 ISGYVNNHEEMKAFALVNEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVG- 335

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLR----------------------VKNVF 148
               +  V +  +  Y+KC   + A +LF  L+                       KN+F
Sbjct: 336 -LIDSVIVASAFIDAYSKCRNPNDACKLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIF 394

Query: 149 ---------SWAAIIGLNCRVGLSE-----KALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
                    SW +II     VGL++     +AL  F +M +  +  D F L +V+ AC  
Sbjct: 395 ETMPSKSLISWNSII-----VGLAQNAYPLEALDVFGKMNKLDLRMDRFSLASVISACAC 449

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
           +  +  G  V    +  G +    V++SL+D Y KCG +E  RK+FD MI  + V+WNSM
Sbjct: 450 ISSLELGEQVFARAIITGLESDQAVSTSLVDFYCKCGFIENGRKLFDSMIKTDEVSWNSM 509

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           ++GY  NG   E + +F EM   G+ PT ++ T +LSA  +   ++EG++       N M
Sbjct: 510 LMGYATNGYGLETLTLFNEMKQAGLRPTDITFTGVLSACDHCGLVEEGRKW-----FNIM 564

Query: 315 ELDNVLG------SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDV 367
           + D  +       S +++ +++ G L++A  +   M  E D   W+ ++   V  G  D+
Sbjct: 565 KYDYHIDPGIEHYSCMVDLFARAGCLKEALNLVEHMPFEADCSMWSSVLRGCVAHGDKDL 624

Query: 368 --VVASSIVDM 376
              VA  I+ +
Sbjct: 625 GKKVAQQIIQL 635


>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 748

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 208/708 (29%), Positives = 337/708 (47%), Gaps = 104/708 (14%)

Query: 77  IGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVAS 136
           I    Y ++LQ     +D+   +Q+H  I+K+     ++ YV  KL+  Y +C  L    
Sbjct: 3   IDSYTYVDILQKVFKHKDLVLAKQVHECIIKSE--MEQHPYVANKLMSIYIRCGRLQNTR 60

Query: 137 RLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
            +F  L  KNVF+W  +IG        E A+  + +M+++GV P+     N+LKAC +  
Sbjct: 61  EVFDTLVEKNVFNWTIMIGGYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSPM 120

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
            + +GR +H ++   GF   + + ++LI MY +CG +++AR VF+GM+ R+++ WN MI 
Sbjct: 121 ALKWGRKIHDHIRHAGFQSDLRLGNALIHMYARCGSMDDARLVFNGMVDRDIITWNVMIG 180

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
             VQ+G   EA  +F +M  EG  P   +  S+L+A+A   AL   K+ H+ A+  G+E 
Sbjct: 181 RLVQHGRGHEAFSLFLQMQREGFVPDTTTYLSMLNANACTGALGWVKEVHSHALRAGLES 240

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------Q 364
           D  +G+++++ Y++ G ++DA +VF +M ER+I+TWN +I    Q G            Q
Sbjct: 241 DVRVGTALVHMYARSGSIKDARLVFDKMTERNIITWNSMIGGLAQHGCGLEAFSLFRQMQ 300

Query: 365 SDVVVASSI-----------------------------------------VDMYAKCERI 383
            + +V  +I                                         V MYAKC  +
Sbjct: 301 REGLVPDAITYVNILNNACASTGALQWVRKVHDDAAKVGLDFDVRVGNALVHMYAKCGSM 360

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG- 442
           D+A++VF  ++ RDVV W  ++   A  G   EA  LF QMQ EG  PN+ ++ S++ G 
Sbjct: 361 DDARRVFYGMVDRDVVSWTVMIGGLAQHGFGREAFSLFLQMQREGFVPNLTTYLSILNGK 420

Query: 443 ----------------------------------FLRNGQMNEAKDMFLQMQSLGVQPNL 468
                                             + + G +  A+ +F +M+      ++
Sbjct: 421 ASTGALEWVKEVHTHAVNAELDSHLRVGNALIHMYAKCGSIENARLVFDRMED----RDI 476

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           I+W  +I GL QN  G EA   F EM   G  P   T+   L+AC    +L   + +H +
Sbjct: 477 ISWNAMIGGLAQNGHGREAFSHFLEMQREGFIPDAATLVSILNACASTRALDRVKEVHSH 536

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
            +   L     + ++LV  YAKCG I  A+ VF+   S+++  +N MI G A HG   EA
Sbjct: 537 ALEAGLESDLRVGSALVHTYAKCGRIDDARLVFEGMASRDIITWNVMIGGLAQHGREHEA 596

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH----FG 644
            +LF  +Q  G  PD+IT+ +IL       +  E LE +V     H V+   +       
Sbjct: 597 FSLFLQMQDVGFVPDAITYLSILG----GNVSIEALE-WVKEVHRHAVRAGFDTDPRVSS 651

Query: 645 CVVNLLSRCGNLDEA-LRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
            +V++ ++CG++D A L     M  D D    G LL  C    + E+A
Sbjct: 652 ALVHMYTKCGDIDNAKLHFTPNMLPDLDGTAWGDLLDACRNHGDVEMA 699



 Score =  229 bits (584), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 166/562 (29%), Positives = 270/562 (48%), Gaps = 75/562 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I  L +  +  EA  L  +M+   F      Y  +L        +   +++H+  L+ G 
Sbjct: 179 IGRLVQHGRGHEAFSLFLQMQREGFVPDTTTYLSMLNANACTGALGWVKEVHSHALRAG- 237

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +  V T LV  YA+  ++  A  +F ++  +N+ +W ++IG   + G   +A   F
Sbjct: 238 -LESDVRVGTALVHMYARSGSIKDARLVFDKMTERNIITWNSMIGGLAQHGCGLEAFSLF 296

Query: 171 VEMQEDGVSPDNFVLPNVLK-AC---GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
            +MQ +G+ PD     N+L  AC   GAL WV   R VH    KVG D  V V ++L+ M
Sbjct: 297 RQMQREGLVPDAITYVNILNNACASTGALQWV---RKVHDDAAKVGLDFDVRVGNALVHM 353

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           Y KCG +++AR+VF GM+ R+VV+W  MI G  Q+G   EA  +F +M  EG  P   + 
Sbjct: 354 YAKCGSMDDARRVFYGMVDRDVVSWTVMIGGLAQHGFGREAFSLFLQMQREGFVPNLTTY 413

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVL--GSSIINFYSKVGLLEDAEVVFSRM 344
            SIL+  A+  AL+  K+ H  AV    ELD+ L  G+++I+ Y+K G +E+A +VF RM
Sbjct: 414 LSILNGKASTGALEWVKEVHTHAV--NAELDSHLRVGNALIHMYAKCGSIENARLVFDRM 471

Query: 345 VERDIVTWNLLIASYVQSGQS-----------------DVVVASSIVDMYAKCERIDNAK 387
            +RDI++WN +I    Q+G                   D     SI++  A    +D  K
Sbjct: 472 EDRDIISWNAMIGGLAQNGHGREAFSHFLEMQREGFIPDAATLVSILNACASTRALDRVK 531

Query: 388 QVFNSIIL----RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           +V +  +      D+ + + L+  YA  GR  +A  +F  M     S +II+WN +I G 
Sbjct: 532 EVHSHALEAGLESDLRVGSALVHTYAKCGRIDDARLVFEGMA----SRDIITWNVMIGGL 587

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            ++G+ +EA  +FLQMQ +G  P+ IT+ +++ G    +   EA+ + +E          
Sbjct: 588 AQHGREHEAFSLFLQMQDVGFVPDAITYLSILGG----NVSIEALEWVKE---------- 633

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-- 561
                                +H + +R        + ++LV MY KCG+I  AK  F  
Sbjct: 634 ---------------------VHRHAVRAGFDTDPRVSSALVHMYTKCGDIDNAKLHFTP 672

Query: 562 DISPSKELPVYNAMISGYAMHG 583
           ++ P  +   +  ++     HG
Sbjct: 673 NMLPDLDGTAWGDLLDACRNHG 694



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/564 (23%), Positives = 240/564 (42%), Gaps = 140/564 (24%)

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           KQ H   + + ME    + + +++ Y + G L++   VF  +VE+++  W ++I  Y ++
Sbjct: 25  KQVHECIIKSEMEQHPYVANKLMSIYIRCGRLQNTREVFDTLVEKNVFNWTIMIGGYAEN 84

Query: 363 G----------------------------------------------------QSDVVVA 370
                                                                QSD+ + 
Sbjct: 85  NHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSPMALKWGRKIHDHIRHAGFQSDLRLG 144

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           ++++ MYA+C  +D+A+ VFN ++ RD++ WN ++      GR  EA  LF QMQ EG  
Sbjct: 145 NALIHMYARCGSMDDARLVFNGMVDRDIITWNVMIGRLVQHGRGHEAFSLFLQMQREGFV 204

Query: 431 PNIISWNSVI--------LGFL---------------------------RNGQMNEAKDM 455
           P+  ++ S++        LG++                           R+G + +A+ +
Sbjct: 205 PDTTTYLSMLNANACTGALGWVKEVHSHALRAGLESDVRVGTALVHMYARSGSIKDARLV 264

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS-ACT 514
           F +M     + N+ITW ++I GL Q+ CG EA   F++M   G+ P   T    L+ AC 
Sbjct: 265 FDKM----TERNIITWNSMIGGLAQHGCGLEAFSLFRQMQREGLVPDAITYVNILNNACA 320

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
              +L+  R +H    +  L     +  +LV MYAKCG++  A+RVF     +++  +  
Sbjct: 321 STGALQWVRKVHDDAAKVGLDFDVRVGNALVHMYAKCGSMDDARRVFYGMVDRDVVSWTV 380

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           MI G A HG   EA +LF  +Q++G  P+  T+ +ILN  +  G +      +V     H
Sbjct: 381 MIGGLAQHGFGREAFSLFLQMQREGFVPNLTTYLSILNGKASTGALE-----WVKEVHTH 435

Query: 635 QVKPSMEHF----GCVVNLLSRCGNLD-------------------------------EA 659
            V   ++        ++++ ++CG+++                               EA
Sbjct: 436 AVNAELDSHLRVGNALIHMYAKCGSIENARLVFDRMEDRDIISWNAMIGGLAQNGHGREA 495

Query: 660 LRVILTMPCD---PDAHIIGSLLSTCVKSNETELAEYISEHLLQ--LEPD-NPGNYVALS 713
               L M  +   PDA  + S+L+ C  +   +  + +  H L+  LE D   G+  AL 
Sbjct: 496 FSHFLEMQREGFIPDAATLVSILNACASTRALDRVKEVHSHALEAGLESDLRVGS--ALV 553

Query: 714 NAYAASGRWNEVSQVRDIMKEKGL 737
           + YA  GR ++   V + M  + +
Sbjct: 554 HTYAKCGRIDDARLVFEGMASRDI 577



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 171/324 (52%), Gaps = 4/324 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I  L++    REA  L  +M+   F      Y  +L G      +   +++H   + N +
Sbjct: 382 IGGLAQHGFGREAFSLFLQMQREGFVPNLTTYLSILNGKASTGALEWVKEVHTHAV-NAE 440

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
             + +  V   L+  YAKC +++ A  +F R+  +++ SW A+IG   + G   +A   F
Sbjct: 441 LDS-HLRVGNALIHMYAKCGSIENARLVFDRMEDRDIISWNAMIGGLAQNGHGREAFSHF 499

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
           +EMQ +G  PD   L ++L AC +   +   + VH + L+ G +  + V S+L+  Y KC
Sbjct: 500 LEMQREGFIPDAATLVSILNACASTRALDRVKEVHSHALEAGLESDLRVGSALVHTYAKC 559

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +++AR VF+GM +R+++ WN MI G  Q+G   EA  +F +M   G  P  ++  SIL
Sbjct: 560 GRIDDARLVFEGMASRDIITWNVMIGGLAQHGREHEAFSLFLQMQDVGFVPDAITYLSIL 619

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS--RMVERD 348
             + +++AL+  K+ H  AV  G + D  + S++++ Y+K G +++A++ F+   + + D
Sbjct: 620 GGNVSIEALEWVKEVHRHAVRAGFDTDPRVSSALVHMYTKCGDIDNAKLHFTPNMLPDLD 679

Query: 349 IVTWNLLIASYVQSGQSDVVVASS 372
              W  L+ +    G  ++ V ++
Sbjct: 680 GTAWGDLLDACRNHGDVEMAVPTA 703


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/628 (29%), Positives = 325/628 (51%), Gaps = 54/628 (8%)

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           P+ F+  N++ A   LG + +   V  ++ +      +F  ++++ +Y K G L + +++
Sbjct: 38  PETFLSNNLITAYYKLGNLAYAHHVFDHIPQPN----LFSWNTILSVYSKLGLLSQMQQI 93

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDA 298
           F+ M  R+ V+WN  I GY   G   +A+RV+  M  +  +   R++ +++L   +    
Sbjct: 94  FNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRC 153

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           +D G+Q +   +  G   D  +GS +++ Y+K+GL+ DA+  F  M ER++V  N +I  
Sbjct: 154 VDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITG 213

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
            +                  +C  I+ ++++F  +  RD + W  ++      G   EA 
Sbjct: 214 LM------------------RCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREAL 255

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK----------------------DMF 456
            +F +M+L G + +  ++ SV+        + E K                      DM+
Sbjct: 256 DMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMY 315

Query: 457 LQMQSLGV---------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
            + +S+           Q N+I+WT ++ G  QN    EA+  F EM   G++P   T+ 
Sbjct: 316 SKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLG 375

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
             +S+C ++ASL  G   H   +   L     +  +L+ +Y KCG+   + R+F     +
Sbjct: 376 SVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIR 435

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           +   + A+++GYA  G A E + LF+ +   G+ PD +TF  +L+ACS AGLV +GL+ F
Sbjct: 436 DEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYF 495

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             M  +H + P ++H  C+++LL R G L+EA   I  MPC PD     +LLS+C    +
Sbjct: 496 ESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGD 555

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
            E+ ++ ++ L+ LEP NP +YV LS+ YA+ G+W++V+Q+R  M++K +RK PG SWI+
Sbjct: 556 MEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIK 615

Query: 748 IGEELHVFVACDRSHPKTEEIYATLALL 775
              ++HVF A D+S P   +IYA L  L
Sbjct: 616 YKGKVHVFSADDQSSPFLGQIYAELEKL 643



 Score =  205 bits (521), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 219/417 (52%), Gaps = 29/417 (6%)

Query: 71  KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE----------T 120
           K R   +G +I G++L+   +  D++ G  +     K G  +    Y +           
Sbjct: 150 KFRCVDLGRQINGQILK-FGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCN 208

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            ++    +C  ++ + RLFC L+ ++  SW  +I    + GL  +AL  F EM+  G + 
Sbjct: 209 TMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAM 268

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D F   +VL ACG+L  +G G+ +H YV++      VFV S+L+DMY KC  ++ A  VF
Sbjct: 269 DQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVF 328

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
             M  +NV++W +M+VGY QNG +EEA+++F+EM   GVEP   ++ S++S+ ANL +L+
Sbjct: 329 KRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLE 388

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           EG Q H  A+++G+     + +++I  Y K G  E++  +F+ M  RD V+W  L+A Y 
Sbjct: 389 EGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYA 448

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
           Q G+++              E I   +++    +  D V +  +L+A +  G   +  + 
Sbjct: 449 QFGKAN--------------ETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQY 494

Query: 421 FYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           F  M  E GI P +     +I    R G++ EA++    + ++   P+++ W TL+S
Sbjct: 495 FESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNF---INNMPCHPDVVGWATLLS 548



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 149/611 (24%), Positives = 252/611 (41%), Gaps = 125/611 (20%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  LL+ C   ++    +++H  ILK         ++   L+  Y K   L  A  +F  
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKT--IKQPETFLSNNLITAYYKLGNLAYAHHVFDH 65

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEK------------------ALIGFVE----------- 172
           +   N+FSW  I+ +  ++GL  +                  A+ G+             
Sbjct: 66  IPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVY 125

Query: 173 ---MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
              +++  ++ +      +L  C     V  GR ++G +LK GF   VFV S L+DMY K
Sbjct: 126 KLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTK 185

Query: 230 -------------------------------CGDLEEARKVFDGMIARNVVAWNSMIVGY 258
                                          CG +EE++++F G+  R+ ++W  MI G 
Sbjct: 186 LGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGL 245

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           +QNGL  EA+ +F EM L G    + +  S+L+A  +L AL EGKQ HA  VI     DN
Sbjct: 246 MQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAY-VIRTDHKDN 304

Query: 319 V-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD----------- 366
           V +GS++++ YSK   ++ AE VF RM ++++++W  ++  Y Q+G S+           
Sbjct: 305 VFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQR 364

Query: 367 -----------------------------------------VVVASSIVDMYAKCERIDN 385
                                                    + V+++++ +Y KC   +N
Sbjct: 365 NGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTEN 424

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           + ++F  + +RD V W  LLA YA  G++ E   LF +M   G+ P+ +++  V+    R
Sbjct: 425 SHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSR 484

Query: 446 NGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
            G + +    F  M +  G+ P +   T +I  L +     EA  F   M      P   
Sbjct: 485 AGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNM---PCHPDVV 541

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV--TSLVDMYAKCGNIHQAKRVFD 562
                LS+C     +  G+     LI  +   P   V  +SL     K   + Q +R   
Sbjct: 542 GWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMR 601

Query: 563 ISPSKELPVYN 573
               ++ P Y+
Sbjct: 602 DKRVRKEPGYS 612



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 175/350 (50%), Gaps = 22/350 (6%)

Query: 26  SQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGEL 85
           SQ     L+E D+       S+   I+ L +    REA+D+  EM+   F +    +G +
Sbjct: 223 SQRLFCGLKERDSI------SWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSV 276

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L  C     +  G+QIHA +++       N +V + LV  Y+KC ++  A  +F R+  K
Sbjct: 277 LTACGSLLALGEGKQIHAYVIRTDH--KDNVFVGSALVDMYSKCRSIKSAETVFKRMPQK 334

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           NV SW A++    + G SE+A+  F EMQ +GV PD+F L +V+ +C  L  +  G   H
Sbjct: 335 NVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFH 394

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
              L  G    + V+++LI +YGKCG  E + ++F  M  R+ V+W +++ GY Q G   
Sbjct: 395 CRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKAN 454

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ-------AHAVAVINGMELDN 318
           E I +F  M   G++P  V+   +LSA +    +++G Q        H +  I    +D+
Sbjct: 455 ETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPI----VDH 510

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDV 367
              + II+   + G LE+A    + M    D+V W  L++S    G  ++
Sbjct: 511 C--TCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEI 558


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/570 (32%), Positives = 314/570 (55%), Gaps = 51/570 (8%)

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE--EAIRVFYEMTLEGVEP 281
           I    + GD+  AR+VFD M  R+VV+WN+++    + G +    A R+F E       P
Sbjct: 22  ISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAM-----P 76

Query: 282 TR--VSVTSILS---ASANLDALDE---GKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           +R  VS  SI++   A  +LDA      G     VA  N M L  +L         ++G 
Sbjct: 77  SRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAM-LAGLL---------RLGR 126

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
            +DA+ +F  M +R++V++                  +++VD  A+   +  A++VF+++
Sbjct: 127 ADDADRLFGEMPKRNVVSY------------------TTMVDGLARRGEVARAREVFDAM 168

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
             R++V W  +++ Y + G   EA++LF  M       N+++  ++I  + + G +  A+
Sbjct: 169 PDRNLVSWAAMISGYVENGMFVEATKLFEAMP----EKNVVACTAMITSYCKQGDVESAR 224

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +F  +++     ++I+W T+I+G   N  G EA+     M   G+KP   T+   L+AC
Sbjct: 225 RLFDGIRA----KDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTAC 280

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
           + +A LR G++ H   I+  L        +L+ MY+KCGN+ +++ VF    +K++  +N
Sbjct: 281 SALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWN 340

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            +I+ YA HG   + +ALF  ++  G+ PD ITF ++L+AC H G V+  L+LF  M S 
Sbjct: 341 TIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSK 400

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           + + P  EH+ C+V++LSR G L++A   I  MP + + ++ GSLL  C      +L E 
Sbjct: 401 YAISPRAEHYACIVDILSRAGQLEKASSYIKDMPLEAEKNVWGSLLGACQMHGNVQLGEL 460

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            ++ L+Q + ++ G YV LSN YAA+G W +V+QVR  MKE+G++K PG SW +I  E+H
Sbjct: 461 AAKMLVQSDSESSGPYVILSNIYAAAGMWGQVNQVRGQMKERGVKKQPGYSWTEIANEVH 520

Query: 754 VFVACDRSHPKTEEIYATLALLGMHVRLVS 783
           +FV  D SHP+  +I + L  +  H+R+V+
Sbjct: 521 MFVGGDASHPEMRKIISELRKISFHMRMVT 550



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 180/357 (50%), Gaps = 42/357 (11%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE----------DGVSPD 181
           LD AS  F     +NV +W A++    R+G ++ A   F EM +          DG++  
Sbjct: 96  LDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMPKRNVVSYTTMVDGLARR 155

Query: 182 NFVLP--NVLKACGALGWVGFGRAVHGYVLKVGF-----------DGCVFVASSLIDMYG 228
             V     V  A      V +   + GYV    F           +  V   +++I  Y 
Sbjct: 156 GEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMPEKNVVACTAMITSYC 215

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           K GD+E AR++FDG+ A++V++WN+MI GYV NG  EEA+R+   M  EGV+P   ++ +
Sbjct: 216 KQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIA 275

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
           +L+A + L  L +GK  HA+A+   +E      ++++  YSK G + ++E+VF  +  +D
Sbjct: 276 VLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKD 335

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           IV+WN +IA+Y Q G+   V+A     ++ + E            ++ D + + ++L+A 
Sbjct: 336 IVSWNTIIAAYAQHGKYQKVIA-----LFHEMEMTG---------LIPDDITFLSVLSAC 381

Query: 409 ADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEA----KDMFLQMQ 460
             +G+   + +LF  M  +  ISP    +  ++    R GQ+ +A    KDM L+ +
Sbjct: 382 GHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKDMPLEAE 438



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 122/550 (22%), Positives = 224/550 (40%), Gaps = 107/550 (19%)

Query: 113 ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
           AR    + + +   A+   +  A R+F  +  ++V SW A++    R G     L     
Sbjct: 12  ARRLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAG--RHHLPAARR 69

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           + ++ +   + V  N + A                       GC+             GD
Sbjct: 70  LFDEAMPSRDVVSWNSIIA-----------------------GCL-----------AHGD 95

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L+ A   F G   RNV  WN+M+ G ++ G  ++A R+F EM    V    VS T+++  
Sbjct: 96  LDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMPKRNV----VSYTTMVDG 151

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
            A       G+ A A  V + M   N++  +++I+ Y + G+  +A  +F  M E+++V 
Sbjct: 152 LAR-----RGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMPEKNVVA 206

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
              +I SY + G                   +++A+++F+ I  +DV+ WNT++A Y   
Sbjct: 207 CTAMITSYCKQGD------------------VESARRLFDGIRAKDVISWNTMIAGYVHN 248

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQ------------------ 448
           G   EA RL   M  EG+ P+  +  +V+     L  LR G+                  
Sbjct: 249 GHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFS 308

Query: 449 ------------MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
                       + E++ +F+ +++     ++++W T+I+   Q+    + I  F EM  
Sbjct: 309 NALMTMYSKCGNVGESELVFINLRT----KDIVSWNTIIAAYAQHGKYQKVIALFHEMEM 364

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYL-IRHDLCLPTPIVTSLVDMYAKCGNIH 555
           TG+ P   T    LSAC  V  +     +   +  ++ +         +VD+ ++ G + 
Sbjct: 365 TGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLE 424

Query: 556 QAKR-VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNILN 612
           +A   + D+    E  V+ +++    MHG         K L Q   +     +  +NI  
Sbjct: 425 KASSYIKDMPLEAEKNVWGSLLGACQMHGNVQLGELAAKMLVQSDSESSGPYVILSNIYA 484

Query: 613 ACSHAGLVNE 622
           A    G VN+
Sbjct: 485 AAGMWGQVNQ 494


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 194/614 (31%), Positives = 304/614 (49%), Gaps = 94/614 (15%)

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H  +L +GF    F+A+ LI  Y   G    +R VFD +  ++V  WNS+I G+V+N   
Sbjct: 50  HARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLINGFVKNRAY 109

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
            EA   FY+M   GV     ++ ++      +  L+ GK  H  ++  G  L        
Sbjct: 110 NEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVL-------- 161

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
                                                    DV+VA+S++ MY+KC    
Sbjct: 162 -----------------------------------------DVIVANSLMSMYSKCGGFG 180

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSG---EASRLFYQMQLEGISPNIISWNSVIL 441
              ++F+ +  R+V  WN +L+ YAD G      E S     MQ+EG+ P+  + +S++ 
Sbjct: 181 ECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVKDMQIEGLKPDAFTVSSLLT 240

Query: 442 GFLRNGQMNEAK-----------------------------DMFLQMQSLGVQP------ 466
             L NG M +                               DM+ +   + V        
Sbjct: 241 --LCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMYSRSNRVDVGRRVFDRM 298

Query: 467 ---NLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNG 522
              N+  WT +I+G  QN    E ++ F EM +  G++P+  ++   L AC+ VA L   
Sbjct: 299 ECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKVSLVSVLPACSAVAGLTGV 358

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISGYAM 581
           + IHGY IR        +  +L+DMY+KCG++  AK+VF+    +  P+ +++MISGY +
Sbjct: 359 KQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVFEFGSFRRDPISWSSMISGYGL 418

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HG   EA+ ++  + Q G  PD IT   +L+ACS AGLV+EGL ++    + +++KP++E
Sbjct: 419 HGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAGLVDEGLCIYKSAINKYRIKPTVE 478

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
              CVV++L R G L +AL  I TMP +P   + G+++S  +    +E+ +     L+QL
Sbjct: 479 ICACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVSASIIHGNSEMQDLAYRFLVQL 538

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           EP+NP NYV+LSN +A+S RW+ VS+VR +MK++ L K PGCSWI I    H F A D+ 
Sbjct: 539 EPENPSNYVSLSNLHASSRRWDVVSEVRTMMKDRCLTKTPGCSWISINNTTHFFYAADKL 598

Query: 762 HPKTEEIYATLALL 775
           HP ++ IY  L  L
Sbjct: 599 HPCSKSIYELLGGL 612



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 144/519 (27%), Positives = 236/519 (45%), Gaps = 76/519 (14%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           QQ HARIL  G  F +N ++ TKL+  YA      ++  +F  L  K+V+ W ++I    
Sbjct: 47  QQCHARILSLG--FTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLINGFV 104

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           +     +A   F +M   GV  D++ L  + K C  +G +  G+ +HG  LK GF   V 
Sbjct: 105 KNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVLDVI 164

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG---LNEEAIRVFYEMT 275
           VA+SL+ MY KCG   E  K+FD M  RNV +WN ++ GY  +G    ++E      +M 
Sbjct: 165 VANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVKDMQ 224

Query: 276 LEGVEPTRVSVTSILS-ASANLDALDEGKQAHA------VAVINGMELDNVLGSSIINFY 328
           +EG++P   +V+S+L+  + ++   D G++ H       +AV +G E+   LG  +I+ Y
Sbjct: 225 IEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVH--LGCCLIDMY 282

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------QSDVVVA 370
           S+   ++    VF RM  R++  W  +I  +VQ+G                  + + V  
Sbjct: 283 SRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKVSL 342

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
            S++   +    +   KQ+    I +    DV L N L+  Y+  G    A ++F   + 
Sbjct: 343 VSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVF---EF 399

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
                + ISW+S+I G+  +G+  EA  ++ +M  LG +P++I                 
Sbjct: 400 GSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMI----------------- 442

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT-PIVTSLV 545
                             TI   LSAC+    +  G  I+   I      PT  I   +V
Sbjct: 443 ------------------TIVGVLSACSRAGLVDEGLCIYKSAINKYRIKPTVEICACVV 484

Query: 546 DMYAKCGNIHQAKRVFDISPSKELP-VYNAMISGYAMHG 583
           DM  + G + QA       P +  P V+ A++S   +HG
Sbjct: 485 DMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVSASIIHG 523



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 130/434 (29%), Positives = 211/434 (48%), Gaps = 32/434 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+   K +   EA     +M CR   +       + + C    D+  G+ IH + LK G 
Sbjct: 100 INGFVKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTG- 158

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS--EKALI 168
            F  +  V   L+  Y+KC       +LF  +  +NV SW  I+      G    +K + 
Sbjct: 159 -FVLDVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVS 217

Query: 169 GFV-EMQEDGVSPDNFVLPNVLKAC-GALGWVGFGRAVHGYV----LKVGFDGCVFVASS 222
           GFV +MQ +G+ PD F + ++L  C G +G    GR +HG++    L VG    V +   
Sbjct: 218 GFVKDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCC 277

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL-EGVEP 281
           LIDMY +   ++  R+VFD M  RNV AW +MI G+VQNG  EE + +F+EM + +GVEP
Sbjct: 278 LIDMYSRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEP 337

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
            +VS+ S+L A + +  L   KQ H  A+      D  L +++I+ YSK G L+ A+ VF
Sbjct: 338 NKVSLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVF 397

Query: 342 S-RMVERDIVTWNLLIASYVQSGQSDVVV--------------ASSIVDMYAKCER---I 383
                 RD ++W+ +I+ Y   G+ +  V                +IV + + C R   +
Sbjct: 398 EFGSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAGLV 457

Query: 384 DNAKQVFNSIILRDVVLWNT-LLAAYAD-LGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           D    ++ S I +  +     + A   D LGRSG+  +    ++   + P+   W +V+ 
Sbjct: 458 DEGLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVS 517

Query: 442 GFLRNGQMNEAKDM 455
             + +G  +E +D+
Sbjct: 518 ASIIHGN-SEMQDL 530


>gi|449456490|ref|XP_004145982.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 208/677 (30%), Positives = 338/677 (49%), Gaps = 58/677 (8%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           LD+A  LF  + V++V SW  +I    + G   +AL    EM  + V  +     ++L  
Sbjct: 53  LDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEMHCNNVKLNETTFSSLLSI 112

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C   G    G+  H  VLK G      V S+L+  Y    D+  A++VFD +  +N + W
Sbjct: 113 CAHSGCSSEGKQFHCLVLKSGLQIFERVGSALVYFYANINDISGAKQVFDELHDKNDLLW 172

Query: 252 NSMIVGYVQNGLNEEAIRVFYE--------------------------------MTLEG- 278
           + ++VGYV+  L ++A+ +F +                                M + G 
Sbjct: 173 DLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCSMRMNGE 232

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           VEP   +  S++ A   +  L  GK  H +    G   D+ + S++I FY +   +++A+
Sbjct: 233 VEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDNAK 292

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
            V+  M    +   N L+   + +G                  RI++A+++F  +  ++ 
Sbjct: 293 AVYDSMERPCLKASNSLLEGLIFAG------------------RINDAEEIFCKLREKNP 334

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
           V +N +L  YA  GR   + RLF +M  +  S    S N++I  + RNG++++A  +F  
Sbjct: 335 VSYNLMLKGYATSGRIEGSKRLFERMTHKTTS----SLNTMISVYSRNGEIDKAFKLFES 390

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           ++S G   + +TW ++ISG  QN     A+  +  M  T ++ S +T +    ACT +  
Sbjct: 391 VKSEG---DPVTWNSMISGCIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEY 447

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           ++ G+A+H + IR        + TSL+DMYAKCG+I+ A+  F       +  + A+I+G
Sbjct: 448 IQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCFPNVAAFTALING 507

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           Y  HGL +EA ++F  + +  + P+  T   IL+ACS AG+V EG+ +F  M   + V P
Sbjct: 508 YVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIP 567

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
           ++EH+ CVV+LL R G L EA   I  MP + D  I G+LL+ C    + EL E +++ +
Sbjct: 568 TLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNACWFWMDLELGESVAKKV 627

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
           L L+P     Y+ LSN YA  G+W E   VR  +    ++K  GCSWI +  +  VF A 
Sbjct: 628 LSLDPKAISAYIILSNIYAKLGKWVEKINVRRQLMSLKVKKIRGCSWIDVNNKTCVFSAG 687

Query: 759 DRSHPKTEEIYATLALL 775
           DRSHP    IY+TL  L
Sbjct: 688 DRSHPNCNAIYSTLEHL 704



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 150/594 (25%), Positives = 251/594 (42%), Gaps = 111/594 (18%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           IS  SK  +  EA++L +EM C N ++    +  LL  C +      G+Q H  +LK+G 
Sbjct: 75  ISGYSKFGKYSEALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEGKQFHCLVLKSGL 134

Query: 110 -----------DFFA-----------------RNEYVETKLVVFYAKCDALDVASRLFCR 141
                       F+A                 +N+ +   L+V Y KC+ +D A  LF +
Sbjct: 135 QIFERVGSALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMK 194

Query: 142 LRVKNVFSWAAIIGL------NCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGA 194
           +  ++V +W  +I        NC+ GL       F  M+ +G V P+ F   +V++ACG 
Sbjct: 195 IPTRDVVAWTTMISAYARSEHNCKRGLEL-----FCSMRMNGEVEPNEFTFDSVVRACGR 249

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM----------- 243
           + ++ +G+ VHG + K GF     V S+LI  Y +C  ++ A+ V+D M           
Sbjct: 250 MRYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDNAKAVYDSMERPCLKASNSL 309

Query: 244 --------------------IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
                                 +N V++N M+ GY  +G  E + R+F  MT      T 
Sbjct: 310 LEGLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMT----HKTT 365

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELD-NVLGSSIINFYSKVGLLEDAEVVFS 342
            S+ +++S  +    +D+  +        G  +  N + S  I  +   G L+    +  
Sbjct: 366 SSLNTMISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGCIQNHQHEGALKLYITMCR 425

Query: 343 RMVERDIVTWNLLIAS-----YVQSGQ------------SDVVVASSIVDMYAKCERIDN 385
             VER   T++ L  +     Y+Q GQ            S+V V +S++DMYAKC  I +
Sbjct: 426 TSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYD 485

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A+  F S+   +V  +  L+  Y   G   EA  +F +M    + PN     + +LG L 
Sbjct: 486 AQTSFASVCFPNVAAFTALINGYVHHGLGIEAFSVFDEMLKHKVPPN----GATLLGILS 541

Query: 446 ----NGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
                G + E   +F  M+   GV P L  +  ++  L ++    EA  F + M    I+
Sbjct: 542 ACSCAGMVKEGMTVFHSMEKCYGVIPTLEHYACVVDLLGRSGRLYEAEAFIRCM---PIE 598

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV--DMYAKCG 552
                    L+AC     L  G ++   ++  D   P  I   ++  ++YAK G
Sbjct: 599 ADRVIWGALLNACWFWMDLELGESVAKKVLSLD---PKAISAYIILSNIYAKLG 649



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 191/403 (47%), Gaps = 33/403 (8%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L+ A+ +F+ M  R+VV+WN MI GY + G   EA+ +  EM    V+    + +S+L
Sbjct: 51  GHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEMHCNNVKLNETTFSSLL 110

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           S  A+     EGKQ H + + +G+++   +GS+++ FY+ +  +  A+ VF  + +++ +
Sbjct: 111 SICAHSGCSSEGKQFHCLVLKSGLQIFERVGSALVYFYANINDISGAKQVFDELHDKNDL 170

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
            W+LL+  YV                  KC  +D+A  +F  I  RDVV W T+++AYA 
Sbjct: 171 LWDLLLVGYV------------------KCNLMDDALDLFMKIPTRDVVAWTTMISAYAR 212

Query: 411 LGRSGEAS-RLFYQMQLEG-ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
              + +    LF  M++ G + PN  +++SV+    R   ++  K +   +   G   + 
Sbjct: 213 SEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHFDH 272

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
              + LI    Q    + A   +  M    +K S + +   + A         GR     
Sbjct: 273 SVCSALILFYCQCEAIDNAKAVYDSMERPCLKASNSLLEGLIFA---------GRINDAE 323

Query: 529 LIRHDLCLPTPIVTSL-VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
            I   L    P+  +L +  YA  G I  +KR+F+    K     N MIS Y+ +G   +
Sbjct: 324 EIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDK 383

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
           A  LF++++ +G   D +T+ ++++ C         L+L++ M
Sbjct: 384 AFKLFESVKSEG---DPVTWNSMISGCIQNHQHEGALKLYITM 423


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 209/683 (30%), Positives = 330/683 (48%), Gaps = 91/683 (13%)

Query: 137 RLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196
           ++F  +  ++V +W  ++    +     +A+  F  M + G+ P      NV  A  ++G
Sbjct: 55  KVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVG 114

Query: 197 WVGFGRAVHGYVLKVG--FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
                  ++G +LK+G  +   +FV SS I MY + G L+  RKVFD  + ++   WN+M
Sbjct: 115 DFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTM 174

Query: 255 IVGYVQNGLNEEAIRVFYE-MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           I G++QN    E + +F + M  E      V+  S L+A + L  L  G+Q HA  + N 
Sbjct: 175 IGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKN- 233

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373
                VL  +++N                                             +I
Sbjct: 234 ---HTVLSVTVLN---------------------------------------------AI 245

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           + MY++C  +  + +VF  +  +DVV WNT+++ +   G   E   L Y+MQ +G   + 
Sbjct: 246 LVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADS 305

Query: 434 ISWNSVILGF--LRNGQMNEAKDMFLQMQSL---GVQPNLI------------------- 469
           ++  S++     LRN ++ +    +L    +   G+   LI                   
Sbjct: 306 VTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDGMDSYLIDMYAKSGLIRISQRVFENN 365

Query: 470 --------TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
                   TW  +I+G TQN    +A + F+ MLE  ++P+  T+   L AC+ + S+  
Sbjct: 366 NIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINL 425

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G+ +HG  IR+ L     + T+LVDMY+K G I+ A+ VF  S  +    Y  MI GY  
Sbjct: 426 GKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQ 485

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HG+   AL+LF ++++ GI PD+ITF  +L+ACS+AGLV+EGL +F  M  D +++PS  
Sbjct: 486 HGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTA 545

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII---GSLLSTCVKSNETELAEYISEHL 698
           H+ CV ++L R G + EA   +  +    + H+I   GSLL  C      EL E +S  L
Sbjct: 546 HYCCVADMLGRVGRVIEAYEFVKQL--GEEGHVIEIWGSLLGACRLHGHIELGEEVSNRL 603

Query: 699 LQLEPDN--PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
           L++   +   G  V LSN YA    W  V ++R  M+EKGLRK  GCSWI  G  L  FV
Sbjct: 604 LEMNSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREKGLRKEVGCSWIDTGGLLVRFV 663

Query: 757 ACDRSHPKTEEIYATLALLGMHV 779
           + D+ H + EEIY  L  L M +
Sbjct: 664 SKDKDHTRCEEIYEMLERLAMEM 686



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 140/545 (25%), Positives = 263/545 (48%), Gaps = 47/545 (8%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D      ++  +LK G+ +A + +V +  +  YA+   LD+  ++F     K+   W  +
Sbjct: 115 DFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTM 174

Query: 154 IGLNCRVGLSEKALIGFVE-MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212
           IG + +     + +  F++ M+ +    D+    + L A   L  +G G+ +H + +K  
Sbjct: 175 IGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNH 234

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
               V V ++++ MY +C  ++ + +VF+ M  ++VV+WN+MI G++QNGL+EE + + Y
Sbjct: 235 TVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVY 294

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
           EM  +G     V+VTS+LSA++NL   + GKQ HA  + +G++ D  + S +I+ Y+K G
Sbjct: 295 EMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDG-MDSYLIDMYAKSG 353

Query: 333 LLEDAEVVF--SRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASSI 373
           L+  ++ VF  + +  RD  TWN +IA Y Q+G                 + + V  +SI
Sbjct: 354 LIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASI 413

Query: 374 VDMYAKCERIDNAKQVFNSIIL----RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
           +   +    I+  KQ+    I     +++ +   L+  Y+  G    A  +F Q      
Sbjct: 414 LPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSS---- 469

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
             N +++ ++ILG+ ++G    A  +F  M+  G+QP+ IT+  ++S  +     +E + 
Sbjct: 470 ERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLR 529

Query: 490 FFQEM-LETGIKPSTTTITCALSACTDVASL--RNGRAIHGYLIRHDLCLPTPIVTSLVD 546
            F+ M  +  I+PST    C       VA +  R GR I  Y     L     ++     
Sbjct: 530 IFESMKRDFKIQPSTAHYCC-------VADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGS 582

Query: 547 MYAKC---GNIHQAK----RVFDISPSKELPVYNAMISG-YAMHGLAVEALALFKNLQQK 598
           +   C   G+I   +    R+ +++    L  Y  ++S  YA          L K++++K
Sbjct: 583 LLGACRLHGHIELGEEVSNRLLEMNSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREK 642

Query: 599 GIDPD 603
           G+  +
Sbjct: 643 GLRKE 647


>gi|224137486|ref|XP_002327138.1| predicted protein [Populus trichocarpa]
 gi|222835453|gb|EEE73888.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 192/604 (31%), Positives = 330/604 (54%), Gaps = 24/604 (3%)

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +++ SW A+I    R G    AL  FV++  +G SP    L  ++ +CG   +V  GR++
Sbjct: 4   RDIVSWNALICGCSRNGYDVDALEIFVQLLREGFSPLQTTLVGLVPSCGRREFVFQGRSI 63

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HG+ +K G D    V ++L  MY K GDLE A  +F+ +  ++VV+WN+MI  Y  NG  
Sbjct: 64  HGFGIKTGIDLDSQVKNALTYMYAKSGDLEAAELLFEELEDKSVVSWNTMIGAYAGNGFF 123

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
            E++ VF  M  + VE   V++ S+L A+ + + +      H  A+  G+  +  + +S+
Sbjct: 124 NESMLVFKRMVEQKVEVNPVTIMSLLPANISPELI------HCYAIKTGLINNGSVVTSL 177

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
           +  Y+K G  E AE+++    ++++V+   +I+SY + G  D+VV     + +++ +++D
Sbjct: 178 VCLYAKCGSTELAELLYWSFPQKNLVSLTAIISSYAEKGNMDLVV-----ECFSRMQQLD 232

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
                    +  D V   ++L    D         L       G+  + +  N +I  + 
Sbjct: 233 ---------MKLDSVAMVSILHGITDPSHMSIGIALHGYALKNGLDTHNLVSNGLISMYF 283

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
           +   +  A  +F +M     +  LI+W ++ISG  Q    ++A+ FF +M   G+ P T 
Sbjct: 284 KFNDIEAAISLFYEMP----EKPLISWNSVISGCVQAGRASDAMKFFCQMKMFGLSPDTI 339

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           T+   L+ C+ +  LR G  +H Y++R++L +   + TSL+DMY KCG+I  A+RVF   
Sbjct: 340 TVASLLTGCSQLGYLRLGERLHNYILRNNLEVEDFVGTSLIDMYTKCGSILLAERVFKSI 399

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
               +  +N MISGY+ +GL   AL  +  ++++G++PD ITF  +L AC H GL++EG 
Sbjct: 400 REPCVATWNTMISGYSWYGLEHNALNCYSKMREQGLEPDRITFLGVLAACIHGGLLHEGK 459

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
           + F  M  +  + P+++H  C+V LL R G  +EAL  I  M  +PD+ + G+LL+ C  
Sbjct: 460 KHFQIMTEEFGMVPNLQHCACMVGLLGRAGLFEEALLFIKNMESEPDSAVWGALLNACCI 519

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
             E +L E +++ L  L+  N G YV +SN YAA+ RWN+ +++R+IMK+ G     G S
Sbjct: 520 HQEIKLGECLAKKLYLLDYKNCGLYVLMSNLYAATNRWNDAAKMREIMKDIGGDGTSGVS 579

Query: 745 WIQI 748
            I++
Sbjct: 580 QIEV 583



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 211/466 (45%), Gaps = 60/466 (12%)

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
           IH   +K G     N  V T LV  YAKC + ++A  L+     KN+ S  AII      
Sbjct: 158 IHCYAIKTG--LINNGSVVTSLVCLYAKCGSTELAELLYWSFPQKNLVSLTAIISSYAEK 215

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G  +  +  F  MQ+  +  D+  + ++L        +  G A+HGY LK G D    V+
Sbjct: 216 GNMDLVVECFSRMQQLDMKLDSVAMVSILHGITDPSHMSIGIALHGYALKNGLDTHNLVS 275

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           + LI MY K  D+E A  +F  M  + +++WNS+I G VQ G   +A++ F +M + G+ 
Sbjct: 276 NGLISMYFKFNDIEAAISLFYEMPEKPLISWNSVISGCVQAGRASDAMKFFCQMKMFGLS 335

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P  ++V S+L+  + L  L  G++ H   + N +E+++ +G+S+I+ Y+K G +  AE V
Sbjct: 336 PDTITVASLLTGCSQLGYLRLGERLHNYILRNNLEVEDFVGTSLIDMYTKCGSILLAERV 395

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  + E  + TWN +I+ Y   G     +  + ++ Y+K                     
Sbjct: 396 FKSIREPCVATWNTMISGYSWYG-----LEHNALNCYSK--------------------- 429

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF-LQM 459
                                  M+ +G+ P+ I++  V+   +  G ++E K  F +  
Sbjct: 430 -----------------------MREQGLEPDRITFLGVLAACIHGGLLHEGKKHFQIMT 466

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
           +  G+ PNL     ++  L +     EA+LF + M     +P +      L+AC     +
Sbjct: 467 EEFGMVPNLQHCACMVGLLGRAGLFEEALLFIKNMES---EPDSAVWGALLNACCIHQEI 523

Query: 520 RNGRAIHG--YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
           + G  +    YL+ +  C    +   + ++YA     + A ++ +I
Sbjct: 524 KLGECLAKKLYLLDYKNC---GLYVLMSNLYAATNRWNDAAKMREI 566



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 9/190 (4%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEI--YGELLQGCVYKRDMYTGQQIHARILKN 108
           IS   +  +  +A+    +MK   F + P+      LL GC     +  G+++H  IL+N
Sbjct: 310 ISGCVQAGRASDAMKFFCQMKM--FGLSPDTITVASLLTGCSQLGYLRLGERLHNYILRN 367

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
                  ++V T L+  Y KC ++ +A R+F  +R   V +W  +I      GL   AL 
Sbjct: 368 N--LEVEDFVGTSLIDMYTKCGSILLAERVFKSIREPCVATWNTMISGYSWYGLEHNALN 425

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL--KVGFDGCVFVASSLIDM 226
            + +M+E G+ PD      VL AC   G +  G+  H  ++  + G    +   + ++ +
Sbjct: 426 CYSKMREQGLEPDRITFLGVLAACIHGGLLHEGKK-HFQIMTEEFGMVPNLQHCACMVGL 484

Query: 227 YGKCGDLEEA 236
            G+ G  EEA
Sbjct: 485 LGRAGLFEEA 494


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/564 (31%), Positives = 311/564 (55%), Gaps = 61/564 (10%)

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM-ELDNVLGSS 323
           ++A R+   M L   +P    + + L    NL A   G+ +HA  + + M + DN   ++
Sbjct: 39  DQAKRLKSHMHLHLFKPNDTFIHNRL---LNLYA-KSGEISHARKLFDEMTQRDNFSWNA 94

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS------------------ 365
           +++ Y+K GL+ED  V+F  M  RD V++N +I+ +  +G+                   
Sbjct: 95  MLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPT 154

Query: 366 ----------------------------------DVVVASSIVDMYAKCERIDNAKQVFN 391
                                             +V V +++ D+YA+C  ID A+++F+
Sbjct: 155 EYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFD 214

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
            +++R+VV WN +++ Y    +  +   LF++MQ+  + P+ ++ +SV+  +++ G ++E
Sbjct: 215 RMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDE 274

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A+ +F +++    + + + WT +I G  QN    +A+L F EML    +P   TI+  +S
Sbjct: 275 ARKVFGEIR----EKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVS 330

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           +C  +ASL +G+ +HG      +     + ++LVDMY KCG    A  +F    ++ +  
Sbjct: 331 SCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVS 390

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           +N+MI GYA++G  +EAL+L++N+ ++ + PDS+TF  +L+AC HAGLV EG E F  M 
Sbjct: 391 WNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMS 450

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
             H ++P+ +H+ C+VNL  R G++D+A+ +I +M  +P++ I  ++LS CV   + +  
Sbjct: 451 DQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHG 510

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
           E  +  L++L P N   Y+ LSN YAA GRW +V+ +R +MK K ++K    SWI+I  E
Sbjct: 511 EMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNE 570

Query: 752 LHVFVACDRSHPKTEEIYATLALL 775
           +H FVA DR+HP  + I+  L  L
Sbjct: 571 VHKFVADDRTHPDAKIIHVQLNRL 594



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 152/581 (26%), Positives = 272/581 (46%), Gaps = 80/581 (13%)

Query: 54  LSKEKQIREAVDLLTEMKCRNFQIGP---EIYGELLQGCVYKRDMYTGQQI----HARIL 106
           ++ + ++R+A+D L       +  GP   E Y  L   C    D+   +++    H  + 
Sbjct: 1   MNSKLKLRQAIDTL-------YTNGPASHECYTRLALECFRASDVDQAKRLKSHMHLHLF 53

Query: 107 KNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK- 165
           K  D F  N     +L+  YAK   +  A +LF  +  ++ FSW A++ L  + GL E  
Sbjct: 54  KPNDTFIHN-----RLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDL 108

Query: 166 ------------------------------ALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
                                         AL  F+ MQ++G+ P  +   +VL AC  L
Sbjct: 109 RVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQL 168

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
             +  G+ +HG ++     G VFV ++L D+Y +CG++++AR++FD M+ RNVV WN MI
Sbjct: 169 LDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMI 228

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            GY++N   E+ I +F+EM +  ++P +V+ +S+L A      +DE ++          E
Sbjct: 229 SGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEI----RE 284

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS---------GQ-- 364
            D V  + +I   ++ G  EDA ++FS M+  +       I+S V S         GQ  
Sbjct: 285 KDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVV 344

Query: 365 ----------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
                      D++V+S++VDMY KC    +A  +F+++  R+VV WN+++  YA  G+ 
Sbjct: 345 HGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQD 404

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL-GVQPNLITWTT 473
            EA  L+  M  E + P+ +++  V+   +  G + E K+ F  M    G++P    +  
Sbjct: 405 LEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYAC 464

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +++   ++   ++A+     M +   +P++   T  LS C     +++G      LI  +
Sbjct: 465 MVNLFGRSGHMDKAVDLISSMSQ---EPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELN 521

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
                P +  L +MYA  G       +  +  SK +  ++A
Sbjct: 522 PFNAVPYIM-LSNMYAARGRWKDVASIRSLMKSKHVKKFSA 561



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 198/432 (45%), Gaps = 55/432 (12%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           SY   IS  +   +   A+ +   M+    +     +  +L  C    D+  G+QIH RI
Sbjct: 122 SYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRI 181

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +        N +V   L   YA+C  +D A RLF R+ ++NV +W  +I    +    EK
Sbjct: 182 IICN--LGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEK 239

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
            +  F EMQ   + PD     +VL A                                  
Sbjct: 240 CIDLFHEMQVSNLKPDQVTASSVLGA---------------------------------- 265

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
            Y + G ++EARKVF  +  ++ V W  MIVG  QNG  E+A+ +F EM LE   P   +
Sbjct: 266 -YIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYT 324

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           ++S++S+ A L +L  G+  H  A + G+  D ++ S++++ Y K G+  DA  +FS M 
Sbjct: 325 ISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQ 384

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
            R++V+WN +I  Y  +GQ D+   S   +M       +N K         D V +  +L
Sbjct: 385 TRNVVSWNSMIGGYALNGQ-DLEALSLYENMLE-----ENLKP--------DSVTFVGVL 430

Query: 406 AAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           +A    G   E    F  M  + G+ P    +  ++  F R+G M++A D+   + S+  
Sbjct: 431 SACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDL---ISSMSQ 487

Query: 465 QPNLITWTTLIS 476
           +PN + WTT++S
Sbjct: 488 EPNSLIWTTVLS 499


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 204/674 (30%), Positives = 332/674 (49%), Gaps = 112/674 (16%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           +F  +S I    + G+L+EA  +F  M  R++V+WN+MI  Y +NG   +A +VF EM +
Sbjct: 50  IFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPV 109

Query: 277 EGV----------------------------EPTRVSVTSILSASANLDALDE------- 301
                                          E   VS  ++++        DE       
Sbjct: 110 RATTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAECLYAE 169

Query: 302 ---------------------GKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEV 339
                                GK   AV V  GM +  V+  SS+++ Y K+G + DA  
Sbjct: 170 TPVKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDARS 229

Query: 340 VFSRMVERDIVTWNLLIASYVQSG--------------QSDVVVAS-SIVDMYAKCE--- 381
           +F RM ER+++TW  +I  Y ++G              + DV V S ++  M+  C    
Sbjct: 230 LFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDFF 289

Query: 382 RIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           R     Q+ + ++ R     D+ L N+L++ Y+ LG  GEA  +F  M+ +    + +SW
Sbjct: 290 RYREGSQI-HGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYK----DSVSW 344

Query: 437 NSVILGFLRNGQMNEAKDMFLQM-------------------------QSLGVQP--NLI 469
           NS+I G ++  Q++EA ++F +M                         +  G+ P  + I
Sbjct: 345 NSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDDI 404

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           TWT +IS    N    EA+ +F +ML   + P++ T +  LSA   +A L  G  IHG +
Sbjct: 405 TWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQIHGRV 464

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
           ++ ++     +  SLV MY KCGN + A ++F       +  YN MISG++ +G   EA+
Sbjct: 465 VKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYNGFGKEAV 524

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
            LF  L+  G +P+ +TF  +L+AC H G V+ G + F  M   + ++P  +H+ C+V+L
Sbjct: 525 KLFSMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHYACMVDL 584

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
             R G LDEA  +I TMPC+P + + GSLLS        +LAE  ++ L++LEPD+   Y
Sbjct: 585 FGRSGLLDEAYNLISTMPCEPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPY 644

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           V LS  Y+  G+ ++  ++ +I K K ++K+PG SWI +  ++H F+A D SH   EEI 
Sbjct: 645 VVLSQLYSMVGKNSDCDRIMNIKKSKRIKKDPGSSWIILKGQVHNFLAGDESHLNLEEIA 704

Query: 770 ATLALLGMHVRLVS 783
            TL ++G  + L++
Sbjct: 705 FTLDMIGNEMELIT 718



 Score =  162 bits (411), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 155/606 (25%), Positives = 259/606 (42%), Gaps = 68/606 (11%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           QIS L++   ++EA  +  +M  R+       +  ++        M    Q+   +    
Sbjct: 56  QISKLARNGNLQEAEAIFRQMSHRSIVS----WNAMISAYAENGKMSKAWQVFDEM---- 107

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
              A   Y      +   KCD L  A  LFC +  KN  S+A +I    R G  ++A   
Sbjct: 108 PVRATTSYNAMITAMIKNKCD-LGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAECL 166

Query: 170 FVEMQEDGVSP--DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
           + E       P   N +L   L+      W    R   G  +K      V   SS++D Y
Sbjct: 167 YAETPVKFRDPVASNVLLSGYLRVG---KWNEAVRVFEGMAVKE-----VVSYSSMVDGY 218

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSV 286
            K G + +AR +FD M  RNV+ W +MI GY + G  E+   +F  M  EG V     ++
Sbjct: 219 CKMGRILDARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTL 278

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE 346
             +  A  +     EG Q H +     +E D  LG+S+I+ YSK+G + +A+ VF  M  
Sbjct: 279 AVMFRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKY 338

Query: 347 RDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           +D V+WN LI   VQ  Q              D+V  + ++  ++    I    ++F  +
Sbjct: 339 KDSVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMM 398

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV----------ILGF 443
             +D + W  +++A+   G   EA   F++M  + + PN  +++SV          I G 
Sbjct: 399 PEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGL 458

Query: 444 LRNG---QMNEAKDMFLQMQSLGV------------------QPNLITWTTLISGLTQNS 482
             +G   +MN A D+ +Q   + +                  +PN++++ T+ISG + N 
Sbjct: 459 QIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYNG 518

Query: 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI-V 541
            G EA+  F  +  TG +P+  T    LSAC  V  +  G      +       P P   
Sbjct: 519 FGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHY 578

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELP-VYNAMISGYAMHGLAVEALALFKNLQQKGI 600
             +VD++ + G + +A  +    P +    V+ +++S    H L V+ LA     +   +
Sbjct: 579 ACMVDLFGRSGLLDEAYNLISTMPCEPHSGVWGSLLSASKTH-LRVD-LAELAAKKLIEL 636

Query: 601 DPDSIT 606
           +PDS T
Sbjct: 637 EPDSAT 642



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 113/479 (23%), Positives = 219/479 (45%), Gaps = 47/479 (9%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-V 178
           + +V  Y K   +  A  LF R+  +NV +W A+I    + G  E     F+ M+++G V
Sbjct: 212 SSMVDGYCKMGRILDARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
             ++  L  + +AC        G  +HG + ++  +  +F+ +SLI MY K G + EA+ 
Sbjct: 272 RVNSNTLAVMFRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKA 331

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VF  M  ++ V+WNS+I G VQ     EA  +F +M  + +    VS T ++   +    
Sbjct: 332 VFGVMKYKDSVSWNSLITGLVQREQISEAYELFEKMPGKDM----VSWTDMIKGFSG--- 384

Query: 299 LDEGKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
             +G+ +  V +   M E D++  +++I+ +   G  E+A   F +M+ + +   +   +
Sbjct: 385 --KGEISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFS 442

Query: 358 SYVQSGQS---------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           S + +  S                     D+ V +S+V MY KC   ++A ++F+ I   
Sbjct: 443 SVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISEP 502

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           ++V +NT+++ ++  G   EA +LF  ++  G  PN +++ +++   +  G ++     F
Sbjct: 503 NIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYF 562

Query: 457 LQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC-- 513
             M+ S G++P    +  ++    ++   +EA      M     +P +      LSA   
Sbjct: 563 KSMKFSYGIEPGPDHYACMVDLFGRSGLLDEAYNLISTM---PCEPHSGVWGSLLSASKT 619

Query: 514 ---TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
               D+A L   + I    +  D   P  +++ L   Y+  G      R+ +I  SK +
Sbjct: 620 HLRVDLAELAAKKLIE---LEPDSATPYVVLSQL---YSMVGKNSDCDRIMNIKKSKRI 672


>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
          Length = 648

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 204/674 (30%), Positives = 337/674 (50%), Gaps = 78/674 (11%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDV----ASRLFCRLRVKNVFSWAAIIG 155
           QIHA+ + +G     + +  ++L++F      L +    + RL   +   N FS   ++ 
Sbjct: 22  QIHAQFVASG--LLADAFAASRLILFTTSTRLLPLPFHHSLRLLHVVHRPNAFSCNMVLK 79

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
                GL    L  +  M     +PD +    +  AC     +  GR VH + ++ GF  
Sbjct: 80  AAREHGLPHLCLPLYASMS---AAPDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGR 136

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            +++A++L+ MY  CG L +ARKVFD     + V+WN+++  YVQ    ++A+ VF  M 
Sbjct: 137 NLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMP 196

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
             G                            A AV           SS+++ + + G+++
Sbjct: 197 ERG----------------------------AAAV-----------SSMVSLFGRRGMVD 217

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQ--------SDV------VVASSIVDMYAKCE 381
           +A  VF  +  +D+ TW  +I+ + ++G+        SD+      V  + +V + A C 
Sbjct: 218 EARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACA 277

Query: 382 RIDNAKQ-------VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
           R++  +         F + +   + + N L+  Y+       A RLF      G   +  
Sbjct: 278 RLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDS----GQCLDQF 333

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           SWNS+I G+L+NG + +AK++F  M       + ++WTT+ISG  QN   +EA+  F  M
Sbjct: 334 SWNSMIAGYLKNGSVKDAKELFTVMP----DKDNVSWTTMISGCVQNDQSSEALTIFNNM 389

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
              GIKP   T+   +SACT+++SL  G+++H Y+  H   +   + TSL+DMY KCG +
Sbjct: 390 QAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCL 449

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPDSITFTNILNA 613
             A  VFD    +  P +NA+I G AM+GL +++L +F  ++      P+ ITFT +L+A
Sbjct: 450 ESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSA 509

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           C HAGLV EG   F  M   + + P++ H+GC+V+LL R G + EA  +I +MP  PD  
Sbjct: 510 CRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVP 569

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
             G+LL +C K  + E+ E +   L+ L+P + G +  LSN YA+ G W  V  +R  MK
Sbjct: 570 AWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMK 629

Query: 734 EKGLRKNPGCSWIQ 747
           +  + K PG S ++
Sbjct: 630 QWHVPKIPGSSVVE 643



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/554 (23%), Positives = 227/554 (40%), Gaps = 119/554 (21%)

Query: 78  GPEIYGE--LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVA 135
            P+ Y    L   C  +R +  G+Q+H   +++G  F RN Y+   L+  Y+ C  L  A
Sbjct: 100 APDCYTHTILAAACATRRAIEEGRQVHCHAVRHG--FGRNLYLANALMSMYSACGCLGDA 157

Query: 136 SRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
            ++F    V +  SW  I+    +    ++A+  F  M E G +                
Sbjct: 158 RKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAA---------------- 201

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
                                    SS++ ++G+ G ++EARKVFD +  ++V  W +MI
Sbjct: 202 -----------------------AVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMI 238

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
             + +NG   EA+ +F +M  EG       +  +++A A L+    G+  H +A   G+ 
Sbjct: 239 SCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLG 298

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVD 375
               + +++I+ YS    +  A  +F      D  +WN +IA Y+++G            
Sbjct: 299 SRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGS----------- 347

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
                  + +AK++F  +  +D V W T+++      +S EA  +F  MQ +GI P+ ++
Sbjct: 348 -------VKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVT 400

Query: 436 WNS-----------------------------VILG------FLRNGQMNEAKDMFLQMQ 460
             S                             VILG      +++ G +  A ++F  M+
Sbjct: 401 LVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTME 460

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI-KPSTTTITCALSACTDVASL 519
             G       W  +I GL  N    +++  F EM  +    P+  T T  LSAC     +
Sbjct: 461 ERGTP----CWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLV 516

Query: 520 RNGRAI-----HGYL----IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKEL 569
             G+       H Y     IRH  C        +VD+  + G + +A+ + +  P S ++
Sbjct: 517 EEGQHFFKLMQHKYHIIPNIRHYGC--------MVDLLGRAGYVKEAENLIESMPMSPDV 568

Query: 570 PVYNAMISGYAMHG 583
           P + A++     HG
Sbjct: 569 PAWGALLGSCWKHG 582


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 213/685 (31%), Positives = 334/685 (48%), Gaps = 106/685 (15%)

Query: 198 VGFGRAVHGYVLKVG--FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA--RNVVAWNS 253
           +  GRA+ G++L+ G   +    VA+SL+ +Y KC  +  AR VFDGM    R++V+W +
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTA 122

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA--SANLDALDEGKQAHAVAVI 311
           M     +NG   EA+R+F E   EG+ P   ++ +   A  ++ L  L  G     V  +
Sbjct: 123 MASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKL 182

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------- 363
                D  +G ++I+ ++K G L     VF  + ER +V W LLI  Y QSG        
Sbjct: 183 GFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVEL 242

Query: 364 --------------------------------------------QSDVVVASSIVDMYAK 379
                                                       +SD  V+  +VDMYAK
Sbjct: 243 FLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAK 302

Query: 380 C---ERIDNAKQVFNSIILRDVVLWNTLLAAYADLG-RSGEASRLFYQMQLEGISPNIIS 435
               + + NA++VFN +   +V+ W  LL+ Y   G +  +   LF +M  EGI PN I+
Sbjct: 303 SHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHIT 362

Query: 436 WNSVI-----LG------------------------------FLRNGQMNEAKDMFLQMQ 460
           ++S++     LG                              +  +G + EA+  F Q+ 
Sbjct: 363 YSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQL- 421

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
               + N+++++  + G  +++   +   +  E +E GI  ST T    +SA   V  L 
Sbjct: 422 ---YEKNMVSFSGNLDGDGRSNTYQD---YQIERMELGI--STFTFGSLISAAASVGMLT 473

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            G+ +H   ++        I  SLV MY++CG +  A +VFD      +  + +MISG A
Sbjct: 474 KGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLA 533

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            HG A  AL LF ++   G+ P+ +T+  +L+ACSHAGLV EG E F  M   H + P M
Sbjct: 534 KHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRM 593

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EH+ C+V+LL R G +++AL  I  MPC  DA +  +LL  C   N  ++ E  + H++Q
Sbjct: 594 EHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQ 653

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           LEP +P  YV LSN YA +G W++V+++R +M++K L K  G SW+ +   +H F A D 
Sbjct: 654 LEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDT 713

Query: 761 SHPKTEEIYATLALLGMHVRLVSKV 785
           SHP+ EEIY  L  L   ++++  V
Sbjct: 714 SHPQAEEIYTKLETLIREIKVMGYV 738



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/513 (24%), Positives = 225/513 (43%), Gaps = 65/513 (12%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EAV+L  +M    FQ        +L  C        GQQ+H+  L+ G     +  V   
Sbjct: 238 EAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLG--LESDSCVSCG 295

Query: 122 LVVFYAKC---DALDVASRLFCRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDG 177
           LV  YAK     +L  A  +F R+   NV +W A++ G   R     + +I F +M  +G
Sbjct: 296 LVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEG 355

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           + P++    ++LKAC  LG    GR +H + +K        V ++L+ MY + G +EEAR
Sbjct: 356 IRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEAR 415

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
             FD +  +N+V+++  + G  ++   ++     Y++    +  +  +  S++SA+A++ 
Sbjct: 416 HAFDQLYEKNMVSFSGNLDGDGRSNTYQD-----YQIERMELGISTFTFGSLISAAASVG 470

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
            L +G++ HA+++  G   D  +G+S+++ YS+ G L DA  VF  M + ++++W  +I+
Sbjct: 471 MLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMIS 530

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
              + G             YA                                      A
Sbjct: 531 GLAKHG-------------YA------------------------------------ARA 541

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLIS 476
             LF+ M   G+ PN +++ +V+      G + E K+ F  MQ   G+ P +  +  ++ 
Sbjct: 542 LELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVD 601

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
            L ++    +A+ F  EM     +         L AC    ++  G     ++I+ +   
Sbjct: 602 LLGRSGLVEDALDFINEM---PCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQD 658

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           P P V  L ++YA+ G   Q  R+  +   K L
Sbjct: 659 PAPYVL-LSNLYAEAGLWDQVARIRSLMRDKNL 690


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/523 (33%), Positives = 283/523 (54%), Gaps = 34/523 (6%)

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVT-SILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           G   +A+  F  M      P R S T S L  + +   +   +  H+  V  G   D  +
Sbjct: 112 GAPRDALAAFSAM------PRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFV 165

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G+++I+ YSK G   DA  VF  M ERD+V+WN  +A+ V+ G+                
Sbjct: 166 GNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGE---------------- 209

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             +   +++F+ +  +D V WNT+L  Y   G    A  LF +M       N++SW++++
Sbjct: 210 --LAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPER----NVVSWSTMV 263

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
            G+ + G +  A+ +F +M S     NL+TWT ++S   Q    +EA   F +M E  ++
Sbjct: 264 SGYCKKGDLEMARVIFDKMPS----KNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVE 319

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
                +   L+AC +  SL  G+ IH Y+ + +L   T +  +L+DM+ KCG +++A  V
Sbjct: 320 LDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYV 379

Query: 561 FDISP-SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           FD     K+   +N++I G+AMHG   +AL LF  ++Q+G +PD++T  N+L+AC+H G 
Sbjct: 380 FDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGF 439

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           V+EG   F  M  D+ + P +EH+GC+++LL R G + EA+ +I +MP +P+  I GSLL
Sbjct: 440 VDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLL 499

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
           S C      E AE     L +L+P N GNY  LSN YA +G+W+++++ R  MK  G +K
Sbjct: 500 SACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQK 559

Query: 740 NPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
             G SW+++ E  H F   DR H  +++I   +  L  HV+ V
Sbjct: 560 TAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKHV 602



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 170/370 (45%), Gaps = 34/370 (9%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G    AL  F  M       D+F    ++KA  A G V   RAVH +V+K+G     FV 
Sbjct: 112 GAPRDALAAFSAMPRR----DSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVG 166

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++LID Y K G   +ARKVFD M  R+VV+WN+ +   V+ G      ++F EM     E
Sbjct: 167 NALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMP----E 222

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEV 339
              VS  +IL           G+   A  +   M   NV+  S++++ Y K G LE A V
Sbjct: 223 KDTVSWNTILDGYTKA-----GEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARV 277

Query: 340 VFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCER 382
           +F +M  +++VTW +++++  Q G                 + DV    SI+   A+   
Sbjct: 278 IFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGS 337

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADL-GRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           +   K++   +  R++     +  A  D+  + G  +R  Y    E +  + +SWNS+I 
Sbjct: 338 LSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIG 397

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIK 500
           GF  +G  ++A ++F QM+  G  P+ +T   ++S  T     +E    F  M  + GI 
Sbjct: 398 GFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIM 457

Query: 501 PSTTTITCAL 510
           P      C +
Sbjct: 458 PQIEHYGCMI 467



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 176/381 (46%), Gaps = 31/381 (8%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           + +H+ ++K G     + +V   L+  Y+K      A ++F  +  ++V SW   +    
Sbjct: 148 RAVHSHVVKLGSV--EDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMV 205

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL-KVGFDGCV 217
           R G        F EM E      N +L    KA         G     + L +   +  V
Sbjct: 206 REGELAGVRKLFDEMPEKDTVSWNTILDGYTKA---------GEVEAAFELFQRMPERNV 256

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
              S+++  Y K GDLE AR +FD M ++N+V W  M+    Q GL +EA ++F +M   
Sbjct: 257 VSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEA 316

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            VE    +V SIL+A A   +L  GK+ H       +     + +++I+ + K G +  A
Sbjct: 317 SVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRA 376

Query: 338 EVVF-SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           + VF +  V++D V+WN +I  +   G  D       ++++A+ +     +Q FN     
Sbjct: 377 DYVFDTETVQKDSVSWNSIIGGFAMHGHGD-----KALELFAQMK-----QQGFNP---- 422

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDM 455
           D V    +L+A   +G   E  R F  M+ + GI P I  +  +I    R G + EA D+
Sbjct: 423 DAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDL 482

Query: 456 FLQMQSLGVQPNLITWTTLIS 476
              ++S+  +PN + W +L+S
Sbjct: 483 ---IKSMPWEPNEVIWGSLLS 500



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 25/232 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+ +++  + EA  L  +MK  + ++       +L  C     +  G++IH  + K   
Sbjct: 294 VSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRN- 352

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRV-KNVFSWAAIIGLNCRVGLSEKALIG 169
              R+ +V   L+  + KC  ++ A  +F    V K+  SW +IIG     G  +KAL  
Sbjct: 353 -LGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALEL 411

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR-------AVHGYVLKVGFDGCVFVASS 222
           F +M++ G +PD   + NVL AC  +G+V  GR         +G + ++   GC      
Sbjct: 412 FAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGC------ 465

Query: 223 LIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI--------VGYVQNGLNE 265
           +ID+ G+ G ++EA  +   M    N V W S++        V Y +  +NE
Sbjct: 466 MIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNE 517


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/524 (33%), Positives = 283/524 (54%), Gaps = 34/524 (6%)

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVT-SILSASANLDALDEGKQAHAVAVINGMELDNV 319
            G   +A+  F  M      P R S T S L  + +   +   +  H+  V  G   D  
Sbjct: 418 GGAPRDALAAFSAM------PRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTF 471

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           +G+++I+ YSK G   DA  VF  M ERD+V+WN  +A+ V+ G+               
Sbjct: 472 VGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGE--------------- 516

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              +   +++F+ +  +D V WNT+L  Y   G    A  LF +M       N++SW+++
Sbjct: 517 ---LAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPER----NVVSWSTM 569

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           + G+ + G +  A+ +F +M S     NL+TWT ++S   Q    +EA   F +M E  +
Sbjct: 570 VSGYCKKGDLEMARVIFDKMPS----KNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASV 625

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           +     +   L+AC +  SL  G+ IH Y+ + +L   T +  +L+DM+ KCG +++A  
Sbjct: 626 ELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADY 685

Query: 560 VFDISP-SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           VFD     K+   +N++I G+AMHG   +AL LF  ++Q+G +PD++T  N+L+AC+H G
Sbjct: 686 VFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMG 745

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
            V+EG   F  M  D+ + P +EH+GC+++LL R G + EA+ +I +MP +P+  I GSL
Sbjct: 746 FVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSL 805

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           LS C      E AE     L +L+P N GNY  LSN YA +G+W+++++ R  MK  G +
Sbjct: 806 LSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQ 865

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
           K  G SW+++ E  H F   DR H  +++I   +  L  HV+ V
Sbjct: 866 KTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKHV 909



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 169/368 (45%), Gaps = 34/368 (9%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G    AL  F  M       D+F    ++KA  A G V   RAVH +V+K+G     FV 
Sbjct: 419 GAPRDALAAFSAMPRR----DSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVG 473

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++LID Y K G   +ARKVFD M  R+VV+WN+ +   V+ G      ++F EM     E
Sbjct: 474 NALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMP----E 529

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEV 339
              VS  +IL           G+   A  +   M   NV+  S++++ Y K G LE A V
Sbjct: 530 KDTVSWNTILDGYTKA-----GEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARV 584

Query: 340 VFSRMVERDIVTWNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCER 382
           +F +M  +++VTW +++++  Q G                 + DV    SI+   A+   
Sbjct: 585 IFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGS 644

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADL-GRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           +   K++   +  R++     +  A  D+  + G  +R  Y    E +  + +SWNS+I 
Sbjct: 645 LSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIG 704

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIK 500
           GF  +G  ++A ++F QM+  G  P+ +T   ++S  T     +E    F  M  + GI 
Sbjct: 705 GFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIM 764

Query: 501 PSTTTITC 508
           P      C
Sbjct: 765 PQIEHYGC 772



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 176/381 (46%), Gaps = 31/381 (8%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           + +H+ ++K G     + +V   L+  Y+K      A ++F  +  ++V SW   +    
Sbjct: 455 RAVHSHVVKLGSV--EDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMV 512

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL-KVGFDGCV 217
           R G        F EM E      N +L    KA         G     + L +   +  V
Sbjct: 513 REGELAGVRKLFDEMPEKDTVSWNTILDGYTKA---------GEVEAAFELFQRMPERNV 563

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
              S+++  Y K GDLE AR +FD M ++N+V W  M+    Q GL +EA ++F +M   
Sbjct: 564 VSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEA 623

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
            VE    +V SIL+A A   +L  GK+ H       +     + +++I+ + K G +  A
Sbjct: 624 SVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRA 683

Query: 338 EVVF-SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           + VF +  V++D V+WN +I  +   G  D       ++++A+ +     +Q FN     
Sbjct: 684 DYVFDTETVQKDSVSWNSIIGGFAMHGHGD-----KALELFAQMK-----QQGFNP---- 729

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDM 455
           D V    +L+A   +G   E  R F  M+ + GI P I  +  +I    R G + EA D+
Sbjct: 730 DAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDL 789

Query: 456 FLQMQSLGVQPNLITWTTLIS 476
              ++S+  +PN + W +L+S
Sbjct: 790 ---IKSMPWEPNEVIWGSLLS 807



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 17/214 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S+ +++  + EA  L  +MK  + ++       +L  C     +  G++IH  + K   
Sbjct: 601 VSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRN- 659

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRV-KNVFSWAAIIGLNCRVGLSEKALIG 169
              R+ +V   L+  + KC  ++ A  +F    V K+  SW +IIG     G  +KAL  
Sbjct: 660 -LGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALEL 718

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR-------AVHGYVLKVGFDGCVFVASS 222
           F +M++ G +PD   + NVL AC  +G+V  GR         +G + ++   GC      
Sbjct: 719 FAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGC------ 772

Query: 223 LIDMYGKCGDLEEARKVFDGMI-ARNVVAWNSMI 255
           +ID+ G+ G ++EA  +   M    N V W S++
Sbjct: 773 MIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLL 806


>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 186/611 (30%), Positives = 310/611 (50%), Gaps = 83/611 (13%)

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
             ++Q+ G +P   +L  ++ +C   G V  G  +H  ++KVGFD  V++ S+L+DMYGK
Sbjct: 67  LAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDMYGK 126

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG +  A+++FD M  RNVV WNS+I GY+  G  E AI +F EM   G++PT  SV+++
Sbjct: 127 CGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSVSAV 186

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           L     ++    G Q H +++                   K G   +             
Sbjct: 187 LVGCWRMEDTKLGIQVHGLSM-------------------KCGFCYN------------- 214

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                            +VV + ++D+Y+K   ID ++ +F+ +  R+++ W +++A YA
Sbjct: 215 -----------------IVVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYA 257

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN-- 467
              +   A  L   MQ  GI  N +++N ++  F  +  ++  K +  ++   G++ N  
Sbjct: 258 HCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNSY 317

Query: 468 -------------------------------LITWTTLISGLTQNSCGNEAILFFQEMLE 496
                                           I+W  +I GL+    G  A+  F +M +
Sbjct: 318 LEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQ 377

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
            GI     T T  L A   +++L  G+ IH  +++        +   LV MYA+CG+I+ 
Sbjct: 378 AGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSIND 437

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           AKRVF +    ++  +N+++SG A HG   EA+ LF+ +++ G+ PD+ TF  +L+AC H
Sbjct: 438 AKRVFSLMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRH 497

Query: 617 AGLVNEGLELFVGMFSDHQVK-PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
            GL+++GLE F  M +D+ ++ P+ EH+  +V+L SR G L EA   I TMP +P   + 
Sbjct: 498 VGLLDKGLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVY 557

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
            +LLS C      E+A   ++ LLQ+ P++P  YV LSN  A  G W+ V+ +R +M ++
Sbjct: 558 KALLSACQVHGNVEIAVRCAKKLLQMCPNDPVIYVLLSNVQATVGYWDNVASIRKVMCDR 617

Query: 736 GLRKNPGCSWI 746
           G+RK PG SWI
Sbjct: 618 GVRKEPGYSWI 628



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/521 (26%), Positives = 234/521 (44%), Gaps = 63/521 (12%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
            I+  + EKQ    + LL +++         I   ++  C     ++ G Q+H+ I+K G
Sbjct: 50  HIACDTDEKQSSVDLKLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGIQLHSTIIKVG 109

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
             F  N Y+ + LV  Y KC A+  A RLF  +  +NV +W ++I     VG  E A+  
Sbjct: 110 --FDSNVYICSALVDMYGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIEL 167

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F+EM + G+ P  F +  VL  C  +     G  VHG  +K GF   + V + LID+Y K
Sbjct: 168 FLEMVKVGIDPTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSK 227

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
             +++ +R +FD M  RN++ W SM+ GY        A+ +  +M   G+    V+   +
Sbjct: 228 GWNIDASRLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCL 287

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV--GLLEDAEVVFSRMVER 347
           LS+ ++ + LD  KQ H   +  G+E ++ L  +++  YS+     LED   V S +   
Sbjct: 288 LSSFSSSNDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRW 347

Query: 348 DIVTWNLLIASYVQSGQ------------------------------------------- 364
           D ++WN +I      G                                            
Sbjct: 348 DQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIH 407

Query: 365 ---------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                    S++ V + +V MYA+C  I++AK+VF+ +   DV+ WN+LL+  A  G   
Sbjct: 408 ALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVISWNSLLSGCAYHGYGR 467

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ---SLGVQPNLITWT 472
           EA  LF QM+  G+ P+  ++  V+      G +++  + F  M+   SL   P    ++
Sbjct: 468 EAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLDKGLEYFDLMRNDYSLE-SPTTEHYS 526

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           +++   ++    +EA  F   M    I+P  +     LSAC
Sbjct: 527 SMVDLFSRAGYLSEAEDFINTM---PIEPGPSVYKALLSAC 564


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 214/716 (29%), Positives = 348/716 (48%), Gaps = 105/716 (14%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L  C     +Y G+ +H   LK+G   +    +  +L+  Y++C+++  A +LF  +  +
Sbjct: 13  LGSCNNYGSIYRGRLLHILFLKSGVLHSVLS-IGNRLLQMYSRCNSMREAQQLFEEMPKR 71

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           N FSW  +I    + G   K+L  F  M                    A  W        
Sbjct: 72  NCFSWNTMIEGYLKSGSKGKSLELFDSMPHKD----------------AFSW-------- 107

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
                          + +I  + K G+LE AR++F+ M  +N +AWNSMI GY  NG  +
Sbjct: 108 ---------------NVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPK 152

Query: 266 EAIRVFYEMTLEGVEP---TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
           EA+ +F +++L  +E        + +++ A  NL ALD GKQ HA  V++ +E D+VLGS
Sbjct: 153 EAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGS 212

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERD-------------------------------IVT 351
           S++N Y K G ++ A  V + M E D                               +V 
Sbjct: 213 SLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVL 272

Query: 352 WNLLIASYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSI- 393
           WN +I+ YV +                  Q D    +S++   +    ID   QV   + 
Sbjct: 273 WNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVY 332

Query: 394 ---ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
                 D+++ + L+  Y+   R  +A +LF  +Q    + + I  NS+I  +   G+++
Sbjct: 333 KVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQ----AYDTILLNSMITVYSNCGRID 388

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
           +A+ +F  M S     +LI+W ++I G +QN+C  EA+  F EM + G++    ++   +
Sbjct: 389 DARQIFDTMPS----KSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVI 444

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKEL 569
           SAC  ++SL  G  I        L     I TSLVD Y KCG +   +++FD +  S E+
Sbjct: 445 SACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEV 504

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
           P +N+M+ GYA +G  +EAL +F  ++  G+ P  ITF  +L+AC H GLV EG + F  
Sbjct: 505 P-WNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYA 563

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M  D+ + P +EH+ C+V+L +R G L++A+ +I  MP   D  +  S+L  CV      
Sbjct: 564 MKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNI 623

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
           L + +++ ++ L+P+N G YV LS  YA    W   +QVR +M +K + K PGCSW
Sbjct: 624 LGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKVPGCSW 679



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 162/625 (25%), Positives = 276/625 (44%), Gaps = 117/625 (18%)

Query: 55  SKEKQIREAVDLLTEMKCRN-FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFA 113
           S+   +REA  L  EM  RN F     I G L  G   K         H       D F+
Sbjct: 53  SRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK------DAFS 106

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVE 172
            N  +       +AK   L+VA RLF  +  KN  +W ++I G  C  G  ++A+  F +
Sbjct: 107 WNVVISG-----FAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACN-GRPKEAVGLFKD 160

Query: 173 MQEDGVSP---DNFVLPNVLKACGALGWVGFGRAVHGYVL--KVGFDGCVFVASSLIDMY 227
           +  + +     D FVL  V+ AC  LG +  G+ +H  ++  +V FD    + SSL+++Y
Sbjct: 161 LSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDS--VLGSSLVNLY 218

Query: 228 GKCGDLE-------------------------------EARKVFDGMIARNVVAWNSMIV 256
           GKCGD++                               +AR++F       VV WNSMI 
Sbjct: 219 GKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMIS 278

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           GYV N    EA+ +F  M  +GV+    +  S+LSA + L  +D+G Q HA     G   
Sbjct: 279 GYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTN 338

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
           D ++ S++++ YSK    +DA  +FS +   D +  N                  S++ +
Sbjct: 339 DIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLN------------------SMITV 380

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ----------L 426
           Y+ C RID+A+Q+F+++  + ++ WN+++  ++      EA  LF +M           L
Sbjct: 381 YSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSL 440

Query: 427 EGISPNIISWNSVILG-------------------------FLRNGQMNEAKDMFLQMQS 461
            G+     S +S+ LG                         + + G +   + +F +M  
Sbjct: 441 AGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRM-- 498

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
             ++ + + W +++ G   N  G EA+  F +M   G++P+  T    LSAC     +  
Sbjct: 499 --MKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEE 556

Query: 522 GRAIHGYLIRHDLCLPTPI--VTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISG 578
           GR    Y ++ D  +   I   + +VD+YA+ G +  A  + +  P K +  ++++++ G
Sbjct: 557 GRKWF-YAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRG 615

Query: 579 YAMHGLAVEALALFKNLQQKGIDPD 603
              HG  +    L K + ++ ID D
Sbjct: 616 CVAHGNNI----LGKKVAKRIIDLD 636


>gi|449527015|ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 208/677 (30%), Positives = 337/677 (49%), Gaps = 58/677 (8%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           LD+A  LF  + V++V SW  +I    + G   +AL    EM  + V  +     ++L  
Sbjct: 53  LDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEMHCNNVKLNETTFSSLLSI 112

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C   G    G+  H  VLK G      V S+L+  Y    D+  A++VFD +  +N + W
Sbjct: 113 CAHSGCSSEGKQFHCLVLKSGLQIFERVGSALVYFYANINDISGAKQVFDELHDKNDLLW 172

Query: 252 NSMIVGYVQNGLNEEAIRVFYE--------------------------------MTLEG- 278
           + ++VGYV+  L ++A+ +F +                                M + G 
Sbjct: 173 DLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCSMRMNGE 232

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
           VEP   +  S++ A   +  L  GK  H +    G   D+ + S++I FY +   ++ A+
Sbjct: 233 VEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDSAK 292

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
            V+  M    +   N L+   + +G                  RI++A+++F  +  ++ 
Sbjct: 293 AVYDSMERPCLKASNSLLEGLIFAG------------------RINDAEEIFCKLREKNP 334

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
           V +N +L  YA  GR   + RLF +M  +  S    S N++I  + RNG++++A  +F  
Sbjct: 335 VSYNLMLKGYATSGRIEGSKRLFERMTHKTTS----SLNTMISVYSRNGEIDKAFKLFES 390

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           ++S G   + +TW ++ISG  QN     A+  +  M  T ++ S +T +    ACT +  
Sbjct: 391 VKSEG---DPVTWNSMISGYIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEY 447

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           ++ G+A+H + IR        + TSL+DMYAKCG+I+ A+  F       +  + A+I+G
Sbjct: 448 IQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCLPNVAAFTALING 507

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           Y  HGL +EA ++F  + +  + P+  T   IL+ACS AG+V EG+ +F  M   + V P
Sbjct: 508 YVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIP 567

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
           ++EH+ CVV+LL R G L EA   I  MP + D  I G+LL+ C    + EL E +++ +
Sbjct: 568 TLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNACWFWMDLELGESVAKKV 627

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
           L L+P     Y+ LSN YA  G+W E   VR  +    ++K  GCSWI +  +  VF A 
Sbjct: 628 LSLDPKAISAYIILSNIYAKLGKWVEKINVRRKLMSLKVKKIRGCSWIDVNNKTCVFSAG 687

Query: 759 DRSHPKTEEIYATLALL 775
           DRSHP    IY+TL  L
Sbjct: 688 DRSHPNCNAIYSTLEHL 704



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 154/597 (25%), Positives = 256/597 (42%), Gaps = 117/597 (19%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           IS  SK  +  EA++L +EM C N ++    +  LL  C +      G+Q H  +LK+G 
Sbjct: 75  ISGYSKFGKYSEALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEGKQFHCLVLKSGL 134

Query: 110 -----------DFFA-----------------RNEYVETKLVVFYAKCDALDVASRLFCR 141
                       F+A                 +N+ +   L+V Y KC+ +D A  LF +
Sbjct: 135 QIFERVGSALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMK 194

Query: 142 LRVKNVFSWAAIIGL------NCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGA 194
           +  ++V +W  +I        NC+ GL       F  M+ +G V P+ F   +V++ACG 
Sbjct: 195 IPTRDVVAWTTMISAYARSEHNCKRGLEL-----FCSMRMNGEVEPNEFTFDSVVRACGR 249

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM----------- 243
           + ++ +G+ VHG + K GF     V S+LI  Y +C  ++ A+ V+D M           
Sbjct: 250 MRYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDSAKAVYDSMERPCLKASNSL 309

Query: 244 --------------------IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
                                 +N V++N M+ GY  +G  E + R+F  MT      T 
Sbjct: 310 LEGLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMT----HKTT 365

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            S+ +++S  +    +D+  +        G   D V  +S+I+ Y +    E A  ++  
Sbjct: 366 SSLNTMISVYSRNGEIDKAFKLFESVKSEG---DPVTWNSMISGYIQNHQHEGALKLYIT 422

Query: 344 M----VERDIVTWNLLIAS-----YVQSGQ------------SDVVVASSIVDMYAKCER 382
           M    VER   T++ L  +     Y+Q GQ            S+V V +S++DMYAKC  
Sbjct: 423 MCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGS 482

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG 442
           I +A+  F S+ L +V  +  L+  Y   G   EA  +F +M    + PN     + +LG
Sbjct: 483 IYDAQTSFASVCLPNVAAFTALINGYVHHGLGIEAFSVFDEMLKHKVPPN----GATLLG 538

Query: 443 FLR----NGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
            L      G + E   +F  M+   GV P L  +  ++  L ++    EA  F + M   
Sbjct: 539 ILSACSCAGMVKEGMTVFHSMEKCYGVIPTLEHYACVVDLLGRSGRLYEAEAFIRCM--- 595

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV--DMYAKCG 552
            I+         L+AC     L  G ++   ++  D   P  I   ++  ++YAK G
Sbjct: 596 PIEADRVIWGALLNACWFWMDLELGESVAKKVLSLD---PKAISAYIILSNIYAKLG 649



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 124/521 (23%), Positives = 234/521 (44%), Gaps = 55/521 (10%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L+ A+ +F+ M  R+VV+WN MI GY + G   EA+ +  EM    V+    + +S+L
Sbjct: 51  GHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEMHCNNVKLNETTFSSLL 110

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           S  A+     EGKQ H + + +G+++   +GS+++ FY+ +  +  A+ VF  + +++ +
Sbjct: 111 SICAHSGCSSEGKQFHCLVLKSGLQIFERVGSALVYFYANINDISGAKQVFDELHDKNDL 170

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
            W+LL+  YV                  KC  +D+A  +F  I  RDVV W T+++AYA 
Sbjct: 171 LWDLLLVGYV------------------KCNLMDDALDLFMKIPTRDVVAWTTMISAYAR 212

Query: 411 LGRSGEAS-RLFYQMQLEG-ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
              + +    LF  M++ G + PN  +++SV+    R   ++  K +   +   G   + 
Sbjct: 213 SEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHFDH 272

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT---------------TITCALSAC 513
              + LI    Q    + A   +  M    +K S +                I C L   
Sbjct: 273 SVCSALILFYCQCEAIDSAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFCKLREK 332

Query: 514 TDVAS--LRNGRAIHG------YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
             V+   +  G A  G       L        T  + +++ +Y++ G I +A ++F+   
Sbjct: 333 NPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDKAFKLFESVK 392

Query: 566 SKELPV-YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
           S+  PV +N+MISGY  +     AL L+  + +  ++    TF+ +  AC+    +  G 
Sbjct: 393 SEGDPVTWNSMISGYIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEYIQLGQ 452

Query: 625 ELFVGMFSDHQVKPSME---HFGC-VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            L V     H ++ + +   + G  ++++ ++CG++ +A +      C P+     +L++
Sbjct: 453 ALHV-----HAIREAFDSNVYVGTSLIDMYAKCGSIYDA-QTSFASVCLPNVAAFTALIN 506

Query: 681 TCVKSN-ETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
             V      E      E L    P N    + + +A + +G
Sbjct: 507 GYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAG 547


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 196/628 (31%), Positives = 305/628 (48%), Gaps = 76/628 (12%)

Query: 221 SSLIDMYGKCGDLEEARKVFDG--MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           ++LI  Y   G+LE  R++F+G  +  R+ V +N+MI GY  NG    A+ +F  M  + 
Sbjct: 83  TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDD 142

Query: 279 VEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGM----------------------- 314
             P   + TS+LSA       ++   Q H   V  GM                       
Sbjct: 143 FRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELG 202

Query: 315 -----------------ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
                            + D +  +++I  Y +   L  A  VF  MVE     WN +I+
Sbjct: 203 IPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMIS 262

Query: 358 SYVQSG-----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV-- 398
            YV  G                 Q D +  ++I+   A        KQ+   I+  ++  
Sbjct: 263 GYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNP 322

Query: 399 ------VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
                  + N L+  Y    +  EA ++FY M +     NII+WN+++ G++  G+M EA
Sbjct: 323 NHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR----NIITWNAILSGYVNAGRMEEA 378

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           K  F +M       NL+T T +ISGL QN  G+E +  F++M   G +P       AL+A
Sbjct: 379 KSFFEEMPV----KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTA 434

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C+ + +L NGR +H  L+         +  +++ MYAKCG +  A+ VF   PS +L  +
Sbjct: 435 CSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSW 494

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
           N+MI+    HG  V+A+ LF  + ++G+ PD ITF  +L ACSHAGLV +G   F  M  
Sbjct: 495 NSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLE 554

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
            + + P  +H+  +V+L  R G    A  VI +MP  P A +  +LL+ C      +L  
Sbjct: 555 SYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGI 614

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
             +E L +L P N G YV LSN YA  GRWN+V++VR +M+++ +RK P CSWI++  ++
Sbjct: 615 EAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKV 674

Query: 753 HVFVACDRSHPKTEEIYATLALLGMHVR 780
           HVF+  D  HP+   +Y  L  LG+ ++
Sbjct: 675 HVFMVDDDVHPEVLSVYRYLEQLGLEMK 702



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 162/660 (24%), Positives = 279/660 (42%), Gaps = 158/660 (23%)

Query: 49  HQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKN 108
           H I+S  K +     ++ L EM C++  +            VY R ++         + N
Sbjct: 38  HMIASGFKPRG--HFLNRLLEMYCKSSNV------------VYARQLFEE-------IPN 76

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLF--CRLRVKNVFSWAAIIGLNCRVGLSEKA 166
            D  AR     T L+  Y     L++   +F    L +++   + A+I      G    A
Sbjct: 77  PDAIAR-----TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSA 131

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKA----------CGALGWVGFGRAVHGYVLKVGFDGC 216
           L  F  M+ D   PD+F   +VL A          CG +         H  V+K G  GC
Sbjct: 132 LELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQM---------HCAVVKTGM-GC 181

Query: 217 VF--VASSLIDMYGK--------CGDLEEARKVFDGMIARNVVAWNSMIVGYVQN----- 261
           V   V ++L+ +Y K        C  +  ARK+FD M  R+ + W +MI GYV+N     
Sbjct: 182 VSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNG 241

Query: 262 --------------------------GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
                                     G  +EA+ +  +M   G++   ++ T+I+SA AN
Sbjct: 242 AREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACAN 301

Query: 296 LDALDEGKQAHAVAVINGMELDN----VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
           + +   GKQ HA  + N +  ++     + +++I  Y K   +++A  +F  M  R+I+T
Sbjct: 302 VGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIIT 361

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
           WN +++ YV +G                  R++ AK  F  + +++++    +++  A  
Sbjct: 362 WNAILSGYVNAG------------------RMEEAKSFFEEMPVKNLLTLTVMISGLAQN 403

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSV-----ILGFLRNGQ------------------ 448
           G   E  +LF QM+L+G  P   ++        +LG L NG+                  
Sbjct: 404 GFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVG 463

Query: 449 ------------MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
                       +  A+ +F+ M S+    +L++W ++I+ L Q+  G +AI  F +ML+
Sbjct: 464 NAMISMYAKCGVVEAAESVFVTMPSV----DLVSWNSMIAALGQHGHGVKAIELFDQMLK 519

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP-IVTSLVDMYAKCGNIH 555
            G+ P   T    L+AC+    +  GR     ++      P       +VD++ + G   
Sbjct: 520 EGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFS 579

Query: 556 QAKRVFDISPSKE-LPVYNAMISGYAMHG---LAVEAL-ALFKNLQQKGIDPDSITFTNI 610
            A+ V D  PSK   PV+ A+++G  +HG   L +EA   LFK + Q   D   +  +NI
Sbjct: 580 YARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQN--DGTYVLLSNI 637



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 202/450 (44%), Gaps = 63/450 (14%)

Query: 60  IREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEY-- 117
            +EA+ L  +M+    Q     Y  ++  C        G+Q+HA ILKN +    + +  
Sbjct: 270 FQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKN-ELNPNHSFCL 328

Query: 118 -VETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA---------- 166
            V   L+  Y K + +D A ++F  + V+N+ +W AI+      G  E+A          
Sbjct: 329 SVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVK 388

Query: 167 ---------------------LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
                                L  F +M+ DG  P +F     L AC  LG +  GR +H
Sbjct: 389 NLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLH 448

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
             ++ +G++  + V +++I MY KCG +E A  VF  M + ++V+WNSMI    Q+G   
Sbjct: 449 AQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGV 508

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSSI 324
           +AI +F +M  EGV P R++  ++L+A ++   +++G+   +++    G+       + +
Sbjct: 509 KAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARM 568

Query: 325 INFYSKVGLLEDAEVVFSRMVER-DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
           ++ + + G+   A +V   M  +     W  L+A     G  D+               I
Sbjct: 569 VDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDL--------------GI 614

Query: 384 DNAKQVFNSIILRD---VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN-IISW--- 436
           + A+Q+F  +   D   V+L N     YAD+GR  + +++   M+ + +      SW   
Sbjct: 615 EAAEQLFKLMPQNDGTYVLLSNI----YADVGRWNDVAKVRKLMRDQAVRKEPACSWIEV 670

Query: 437 -NSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
            N V +  + +    E   ++  ++ LG++
Sbjct: 671 ENKVHVFMVDDDVHPEVLSVYRYLEQLGLE 700



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 146/315 (46%), Gaps = 33/315 (10%)

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           +++MY K   +  A+Q+F  I   D +   TL+ AY  LG       +F    L     +
Sbjct: 54  LLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPL--YMRD 111

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL-----TQNSCGNEA 487
            + +N++I G+  NG  + A ++F  M+    +P+  T+T+++S L      +  CG   
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ-- 169

Query: 488 ILFFQEMLETGIK-PSTTTITCALSACTDVAS--------LRNGRAIHGYLIRHDLCLPT 538
                 +++TG+   S++ +   LS     AS        + + R +   + + D    T
Sbjct: 170 --MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWT 227

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            ++T     Y +  +++ A+ VF+         +NAMISGY   G   EAL L + ++  
Sbjct: 228 TMITG----YVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFL 283

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC------VVNLLSR 652
           GI  D IT+T I++AC++ G    G ++   +  + ++ P+  H  C      ++ L  +
Sbjct: 284 GIQFDDITYTTIISACANVGSFQMGKQMHAYILKN-ELNPN--HSFCLSVSNALITLYCK 340

Query: 653 CGNLDEALRVILTMP 667
              +DEA ++   MP
Sbjct: 341 NNKVDEARKIFYAMP 355



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 43/153 (28%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--- 566
           L +  D AS    RA+H ++I          +  L++MY K  N+  A+++F+  P+   
Sbjct: 20  LCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDA 79

Query: 567 ------------------------------KELPVYNAMISGYAMHGLAVEALALFKNLQ 596
                                         ++   YNAMI+GYA +G    AL LF+ ++
Sbjct: 80  IARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMR 139

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
           +    PD  TFT++L+A          L LFVG
Sbjct: 140 RDDFRPDDFTFTSVLSA----------LVLFVG 162


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 183/505 (36%), Positives = 280/505 (55%), Gaps = 30/505 (5%)

Query: 302 GKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRM----VERDIVTWNLLI 356
           G  A A +V++GM    V+G S++I  ++  G  E A  +  RM    VE +++TWN L+
Sbjct: 69  GATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLV 128

Query: 357 ASYVQSGQS-DVVVA----------------SSIVDMYAKCERIDNAKQVFNSIILR--- 396
           +   +SG++ D V+A                S  +        +   +Q+   ++     
Sbjct: 129 SGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCR 188

Query: 397 -DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
            D  +   L+  Y   GR+ E  R+F     E    ++ S N+++ G  RN Q++EA  +
Sbjct: 189 LDACVATALIDMYGKCGRADEIVRVFD----ESSHMDVASCNALVAGLSRNAQVSEALRL 244

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F +    G++ N+++WT++++   QN    EA+  F+EM   GI+P++ TI C L A  +
Sbjct: 245 FREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFAN 304

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +A+L +GR+ H + +R        + ++LVDMYAKCG +  A+ +F+  P + +  +NAM
Sbjct: 305 IAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAM 364

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I GYAMHG A  A+ LF+++Q     PD +TFT +L ACS AG   EG   F  M   H 
Sbjct: 365 IGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHG 424

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           + P MEH+ C+V LL R G LD+A  +I  MP +PD  I GSLL +C       LAE  +
Sbjct: 425 ISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAA 484

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           E+L QLEP+N GNYV LSN YA+   W+ V+++RD+MK  GL+K  GCSWI+I  ++H+ 
Sbjct: 485 ENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHML 544

Query: 756 VACDRSHPKTEEIYATLALLGMHVR 780
           +A D SHP    I   L  L M +R
Sbjct: 545 LAGDSSHPMMAAITEKLKHLTMEMR 569



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 186/373 (49%), Gaps = 67/373 (17%)

Query: 146 NVFSWAAII-GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           NV +W  ++ GLN R G +  A++  V M  +G  PD   +   L A G +G V  G  +
Sbjct: 120 NVITWNGLVSGLN-RSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQL 178

Query: 205 HGYVLKVG--FDGCVFVASSLIDMYGKCGDLEEARKVFD---------------GM---- 243
           HGYV+K G   D CV  A++LIDMYGKCG  +E  +VFD               G+    
Sbjct: 179 HGYVVKAGCRLDACV--ATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNA 236

Query: 244 ----------------IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
                           I  NVV+W S++   VQNG + EA+ +F EM  EG+EP  V++ 
Sbjct: 237 QVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIP 296

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
            +L A AN+ AL  G+ AH  ++  G   D  +GS++++ Y+K G + DA ++F  M  R
Sbjct: 297 CVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR 356

Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNT 403
           ++V+WN +I  Y   G++                  +NA ++F S+       D+V +  
Sbjct: 357 NVVSWNAMIGGYAMHGEA------------------ENAVRLFRSMQSSKEKPDLVTFTC 398

Query: 404 LLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
           +L A +  G + E    F +MQ + GISP +  +  ++    R G++++A D+  QM   
Sbjct: 399 VLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMP-- 456

Query: 463 GVQPNLITWTTLI 475
             +P+   W +L+
Sbjct: 457 -FEPDGCIWGSLL 468



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 136/254 (53%), Gaps = 5/254 (1%)

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
           + RD  + ++LL AY   G + +A  +   M        ++ W+++I     +G    A 
Sbjct: 51  VSRDAFVASSLLHAYLRFGATADARSVLDGMPHR----TVVGWSALIAAHASHGDAEGAW 106

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +  +M+S GV+PN+ITW  L+SGL ++    +A+L    M   G  P  T ++CALSA 
Sbjct: 107 GLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAV 166

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            DV  +  G  +HGY+++    L   + T+L+DMY KCG   +  RVFD S   ++   N
Sbjct: 167 GDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCN 226

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           A+++G + +    EAL LF+    +GI+ + +++T+I+  C   G   E ++LF  M S+
Sbjct: 227 ALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE 286

Query: 634 HQVKPSMEHFGCVV 647
             ++P+     CV+
Sbjct: 287 -GIEPNSVTIPCVL 299



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 176/394 (44%), Gaps = 51/394 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S L++  + R+AV  L  M    F          L       D+  G+Q+H  ++K G 
Sbjct: 128 VSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGC 187

Query: 111 FFARNEYVETKLVVFYAKC-------------DALDVAS------------------RLF 139
               +  V T L+  Y KC               +DVAS                  RLF
Sbjct: 188 RL--DACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLF 245

Query: 140 CRLRVK----NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195
                +    NV SW +I+    + G   +A+  F EMQ +G+ P++  +P VL A   +
Sbjct: 246 REFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANI 305

Query: 196 GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI 255
             +  GR+ H + L+ GF   ++V S+L+DMY KCG + +AR +F+ M  RNVV+WN+MI
Sbjct: 306 AALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMI 365

Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
            GY  +G  E A+R+F  M     +P  V+ T +L A +     +EG+     +  N M+
Sbjct: 366 GGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGR-----SYFNEMQ 420

Query: 316 LDNVLG------SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVV 368
             + +       + ++    + G L+DA  + ++M  E D   W  L+ S    G  +VV
Sbjct: 421 HKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHG--NVV 478

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
           +A    +   + E  +    V  S I     +W+
Sbjct: 479 LAEVAAENLFQLEPENAGNYVLLSNIYASKKMWD 512



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/498 (23%), Positives = 201/498 (40%), Gaps = 97/498 (19%)

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           PD  +LP+ LK+C A   +   RA+H      G     FVASSL+  Y + G   +AR V
Sbjct: 21  PDPRLLPSALKSCSA---LRLARALHAAAAVAGVSRDAFVASSLLHAYLRFGATADARSV 77

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS-------------- 285
            DGM  R VV W+++I  +  +G  E A  +   M  +GVEP  ++              
Sbjct: 78  LDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRA 137

Query: 286 ---------------------VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
                                V+  LSA  ++  +  G+Q H   V  G  LD  + +++
Sbjct: 138 RDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATAL 197

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
           I+ Y K G  ++   VF      D+ + N L+A   ++ Q                  + 
Sbjct: 198 IDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQ------------------VS 239

Query: 385 NAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
            A ++F   + R    +VV W +++A     GR  EA  LF +MQ EGI PN ++   V+
Sbjct: 240 EALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVL 299

Query: 441 LGF----------------LRNG----------------QMNEAKDMFLQMQSLGVQPNL 468
             F                LR G                +    +D  +  +++  + N+
Sbjct: 300 PAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR-NV 358

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           ++W  +I G   +     A+  F+ M  +  KP   T TC L AC+       GR+    
Sbjct: 359 VSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNE 418

Query: 529 LI-RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAV 586
           +  +H +         +V +  + G +  A  + +  P   +  ++ +++    +HG  V
Sbjct: 419 MQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVV 478

Query: 587 EALALFKNLQQKGIDPDS 604
            A    +NL Q  ++P++
Sbjct: 479 LAEVAAENLFQ--LEPEN 494


>gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 181/549 (32%), Positives = 292/549 (53%), Gaps = 52/549 (9%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ +H  +   G+     +AS+LI +Y  CG L  ARK+FD +   N+  W ++I    +
Sbjct: 48  GKKLHALLTTNGYVRFNLIASNLITLYTTCGQLSIARKLFDKIPQTNIHRWIALIATCAR 107

Query: 261 NGLNEEAIRVFYEM-TLEGVEPTRVSVT-SILSASANLDALDEGKQAHAVAVINGMELDN 318
            G ++ A+ VF EM TL   +   V V  S+L A  ++     G+Q H + +    E+  
Sbjct: 108 CGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACGHVGDRIYGEQVHCLVLKCSFEI-- 165

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
                                                          D  V+S+++ MY+
Sbjct: 166 -----------------------------------------------DAFVSSALIVMYS 178

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
           KC  + +A++VF+ ++++D+V  N +++ YA  G   EA  L   M+L G++PN+++WN+
Sbjct: 179 KCGEVRDARKVFDGMVVKDLVAMNAVVSGYAQQGLPNEALSLVENMKLMGVNPNVVTWNA 238

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I GF +        ++F  M    V+P++++WT+++SG  QN    EA   F++ML  G
Sbjct: 239 LISGFAQKCDREMVSEIFRLMNEDRVEPDVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLG 298

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
             P++ TI+  L AC   A +R G+ IHGY +   +     + ++LVDMYAKCG I +A+
Sbjct: 299 FCPTSATISALLPACATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFISEAR 358

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHA 617
            +F   P K     N+MI GYA HG   EA+ LF  ++ +G+   D +TFT  L ACSH 
Sbjct: 359 TLFYKMPEKNTVTMNSMIFGYANHGCCEEAIELFNQMEMEGVPKLDHLTFTAALTACSHV 418

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           G +  G  LF  M   + ++P +EH+ C+V+L  R G L+EA  +I +MP  PD  + G+
Sbjct: 419 GDIELGQRLFKIMQEKYCIEPRLEHYACMVDLFGRAGKLEEAYGIIKSMPVKPDLFVWGA 478

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           LL+ C      ELAE  ++HL +LEP++ GN + LS+ YA +G W +V +++  +K+  L
Sbjct: 479 LLAACRNHGHVELAEVAAKHLSELEPESAGNRLLLSSLYADAGTWGKVERIKRRIKKGKL 538

Query: 738 RKNPGCSWI 746
           RK  G SWI
Sbjct: 539 RKLQGLSWI 547



 Score =  199 bits (505), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 135/463 (29%), Positives = 232/463 (50%), Gaps = 32/463 (6%)

Query: 79  PEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRL 138
           PE Y +L++   + R +  G+++HA +  NG  + R   + + L+  Y  C  L +A +L
Sbjct: 29  PESYAKLIETYTHSRSLQQGKKLHALLTTNG--YVRFNLIASNLITLYTTCGQLSIARKL 86

Query: 139 FCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ--EDGVSPDNFVLPNVLKACGALG 196
           F ++   N+  W A+I    R G  + AL  F EMQ   D  S   FV+P+VLKACG +G
Sbjct: 87  FDKIPQTNIHRWIALIATCARCGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACGHVG 146

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
              +G  VH  VLK  F+   FV+S+LI MY KCG++ +ARKVFDGM+ +++VA N+++ 
Sbjct: 147 DRIYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDARKVFDGMVVKDLVAMNAVVS 206

Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
           GY Q GL  EA+ +   M L GV P  V+  +++S  A     +   +   +   + +E 
Sbjct: 207 GYAQQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQKCDREMVSEIFRLMNEDRVEP 266

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------- 363
           D V  +S+++ + +    E+A   F +M+       +  I++ + +              
Sbjct: 267 DVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSATISALLPACATEARVRFGKEIH 326

Query: 364 --------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                   + D+ V S++VDMYAKC  I  A+ +F  +  ++ V  N+++  YA+ G   
Sbjct: 327 GYALVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNTVTMNSMIFGYANHGCCE 386

Query: 416 EASRLFYQMQLEGISPNI--ISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITWT 472
           EA  LF QM++EG+ P +  +++ + +      G +   + +F  MQ    ++P L  + 
Sbjct: 387 EAIELFNQMEMEGV-PKLDHLTFTAALTACSHVGDIELGQRLFKIMQEKYCIEPRLEHYA 445

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
            ++    +     EA    + M    +KP        L+AC +
Sbjct: 446 CMVDLFGRAGKLEEAYGIIKSM---PVKPDLFVWGALLAACRN 485



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 165/362 (45%), Gaps = 14/362 (3%)

Query: 382 RIDNAKQVFNSIILR-DVVLWNTLLAAYADLGRSGEASRLFYQMQLEG-ISPNIISWNSV 439
           +I     +FN   LR +   +  L+  Y       +  +L   +   G +  N+I+ N +
Sbjct: 12  KIPTKNAIFNHHFLRSEPESYAKLIETYTHSRSLQQGKKLHALLTTNGYVRFNLIASNLI 71

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
            L +   GQ++ A+ +F ++     Q N+  W  LI+   +    + A+  F EM     
Sbjct: 72  TL-YTTCGQLSIARKLFDKIP----QTNIHRWIALIATCARCGFHDHALEVFSEMQTLND 126

Query: 500 KPSTTT--ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           + S +   I   L AC  V     G  +H  +++    +   + ++L+ MY+KCG +  A
Sbjct: 127 QKSNSVFVIPSVLKACGHVGDRIYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDA 186

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           ++VFD    K+L   NA++SGYA  GL  EAL+L +N++  G++P+ +T+  +++  +  
Sbjct: 187 RKVFDGMVVKDLVAMNAVVSGYAQQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQK 246

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE---ALRVILTMPCDPDAHI 674
                  E+F  M  D +V+P +  +  V++   +    +E   A + +L +   P +  
Sbjct: 247 CDREMVSEIFRLMNED-RVEPDVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSAT 305

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLE-PDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           I +LL  C         + I  + L +   D+     AL + YA  G  +E   +   M 
Sbjct: 306 ISALLPACATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMP 365

Query: 734 EK 735
           EK
Sbjct: 366 EK 367


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/567 (32%), Positives = 304/567 (53%), Gaps = 28/567 (4%)

Query: 204 VHGYVLKVGFDGCVFVASSLID-MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
           +H  ++        F AS L+D +  K  ++  A  VF  +   N    N+M+  Y ++ 
Sbjct: 30  IHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESS 89

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             E A+R + EM  +G+     +   +L A   +  L EG      AV  G   D  + +
Sbjct: 90  TPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVN 149

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
            +I+ Y + G    A  VF    E+D+V+WN ++  YV  G+                  
Sbjct: 150 GLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGE------------------ 191

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYAD-LGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           ++NA+ +F+ +  RDVV W+ ++  Y   +G    A   F  M     + +++SWNS+I 
Sbjct: 192 MENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMP----TRDLVSWNSMID 247

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
           G+ + G+M  A+++F +M    +Q N+I+W+ +I G   +    EA+  F++ML  GIKP
Sbjct: 248 GYAKVGEMEVAREIFBKM----LQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKP 303

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
              ++  A+SAC+ + +L  GR IH Y+ R+ + L   + T+LVDMY KCG+  +A+ +F
Sbjct: 304 DRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIF 363

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           +  P + +  +N MI G  M+G   EAL  F  ++ + I  D + F  +L ACSHA LV 
Sbjct: 364 NSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVT 423

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           EGL +F  M   ++++P +EH+GC+V+LL R G LD+   +I +MP  P+A + GSLL  
Sbjct: 424 EGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLA 483

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C       LAE + E L +L+ D+ G YV +SN YA  G W  + ++R +MKE+ ++K+ 
Sbjct: 484 CRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDI 543

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEI 768
           G S I++   +  FV+ ++SH   EEI
Sbjct: 544 GRSVIEVDGNVEEFVSGEKSHILREEI 570



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 218/473 (46%), Gaps = 76/473 (16%)

Query: 100 QIHARILKN---GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           QIHA+++      D FA +  +++ +    +K   ++ A  +F ++   N F    ++  
Sbjct: 29  QIHAQLITTNLISDTFAASRLLDSVV----SKTLNVNYAELVFAQIHQPNSFICNTMVKC 84

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
                  E+AL  + EM++ G+  DN+  P VLKACGA+  +  G  V G  +K GF G 
Sbjct: 85  YTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGD 144

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           VFV + LI MY +CG+   AR VFDG   +++V+WNSM+ GYV  G  E A  +F EM  
Sbjct: 145 VFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEM-- 202

Query: 277 EGVEPTRVSVTSILSASANLDALDE--GKQAHAVAVINGMEL-DNVLGSSIINFYSKVGL 333
               P R     ++S S  +D   +  G+   A    + M   D V  +S+I+ Y+KVG 
Sbjct: 203 ----PER----DVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGE 254

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------------------------- 365
           +E A  +F +M+++++++W+++I  Y     S                            
Sbjct: 255 MEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSA 314

Query: 366 ------------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
                                   D+VV +++VDMY KC   D A+ +FNS+  R+VV W
Sbjct: 315 CSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSW 374

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
           N ++      G   EA   F QM++E I  + + +  V++       + E   +F QM+ 
Sbjct: 375 NVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKG 434

Query: 462 L-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           +  ++P L  +  L+  L +    ++     Q M    +KP+       L AC
Sbjct: 435 VYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSM---PMKPNAALWGSLLLAC 484


>gi|357443809|ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481230|gb|AES62433.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 912

 Score =  323 bits (827), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 224/754 (29%), Positives = 362/754 (48%), Gaps = 99/754 (13%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G  IH+ I+K G     + Y+   L+  YAK   +  A  LF  +  ++V SW  I+  +
Sbjct: 33  GICIHSPIIKLG--LQHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTTILSSH 90

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            +      AL  F  M   G  P+ F L + L++C ALG    G  +H   +K+G +   
Sbjct: 91  TKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHCSAVKLGLEMNR 150

Query: 218 FVASSLIDMYGKCGDLE-EARKVF----DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
           FV +SL++ Y KCG    EA K+     DG    +VV+W +M+   V+NG   EA  ++ 
Sbjct: 151 FVGTSLVEFYTKCGCCSVEAWKLLSLVKDG---GDVVSWTTMLSSLVENGKWGEAFEIYV 207

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
           +M   GV P   +   +L A ++   L  GK  HA  ++ G EL+ VL +++++ YSK  
Sbjct: 208 KMIESGVYPNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCR 267

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ---------------------------- 364
            + DA  V +   E D+  W  LI+ + Q+ Q                            
Sbjct: 268 RMVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLN 327

Query: 365 ------------------------SDVVVASSIVDMYAKCERID-NAKQVFNSIILRDVV 399
                                    D+ + +++VDMY KC  I  NA +VF  I   +V+
Sbjct: 328 ASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVM 387

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG-----------FLRNGQ 448
            W +L+A +A+  R  ++ +LF +MQ  G+ PN  +  S ILG            + +G 
Sbjct: 388 CWTSLIAGFAE-KRLEDSFQLFAEMQAAGVRPNSFTM-SAILGACSKTRSLVPTMMLHGH 445

Query: 449 MNEAK------------------DMFLQMQSLGVQPNL---ITWTTLISGLTQNSCGNEA 487
           + + K                   M  +  S+    NL   IT+T L + L Q      A
Sbjct: 446 IIKTKVDIDIAVANALVDTYAGVGMIDEAWSVIGTMNLRDSITYTCLAARLNQKGHHGMA 505

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
           +     M   GIK    ++   LSA   + ++  G+ +H Y ++        +  SLV +
Sbjct: 506 LKVLIHMCNDGIKMDEFSLASFLSAAAGLGTMETGKQLHCYSVKSGFQRCHSVSNSLVHL 565

Query: 548 YAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           Y+KCG+IH A R F DIS       +N +ISG++ +GL   AL+ F +++  G+ PDSIT
Sbjct: 566 YSKCGSIHDANRAFKDISEPDAFS-WNGLISGFSWNGLISHALSTFDDMRLAGVKPDSIT 624

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
             ++++ACSH GL+  GLE F  M  ++ + P ++H+ C+V+LL R G L+EA+ VI  M
Sbjct: 625 LLSLISACSHGGLLELGLEYFHSMQKEYHITPKLDHYMCLVDLLGRGGRLEEAMGVIEKM 684

Query: 667 PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726
              PD+ I  +LL+ C       L E ++   L+L+P +P  Y+ L+N Y  +G  +   
Sbjct: 685 SFKPDSLICKTLLNACNLHGNVALGEDMARRCLELDPSDPAIYLLLANLYDNAGLSDFGE 744

Query: 727 QVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           + R +M+E+GLR++PG  W++I   +H F A ++
Sbjct: 745 KTRRLMRERGLRRSPGQCWMEIRSRVHHFSAGEK 778



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 200/463 (43%), Gaps = 98/463 (21%)

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
           N ++L EG   H+  +  G++ D  L +++++ Y+K   +  A  +F  M  RD+V+W  
Sbjct: 26  NSNSLKEGICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTT 85

Query: 355 LIASYVQSG-QSDVV--------------------------------------------- 368
           +++S+ ++   SD +                                             
Sbjct: 86  ILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHCSAVKLG 145

Query: 369 ------VASSIVDMYAKCERIDNAKQVFNSIILR--DVVLWNTLLAAYADLGRSGEASRL 420
                 V +S+V+ Y KC           S++    DVV W T+L++  + G+ GEA  +
Sbjct: 146 LEMNRFVGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMLSSLVENGKWGEAFEI 205

Query: 421 FYQMQLEGISPN------IISWNSVILGFLRNGQMNEAK-----------------DMF- 456
           + +M   G+ PN      ++   S  LG L  G++  A                  DM+ 
Sbjct: 206 YVKMIESGVYPNEFTFVKLLGAVSSFLG-LSYGKLLHAHLIMFGAELNLVLKTAVVDMYS 264

Query: 457 --------LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
                   +++ +L  + ++  WTTLISG TQN    EAI  F++M  +G+ P+  T + 
Sbjct: 265 KCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSS 324

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI-HQAKRVFDISPSK 567
            L+A + + SL  G   H  +I   L     I  +LVDMY KC +I   A +VF    S 
Sbjct: 325 LLNASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSP 384

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
            +  + ++I+G+A   L  ++  LF  +Q  G+ P+S T + IL ACS    +   +   
Sbjct: 385 NVMCWTSLIAGFAEKRLE-DSFQLFAEMQAAGVRPNSFTMSAILGACSKTRSLVPTM--- 440

Query: 628 VGMFSDHQVKPSMEHFGCVVNLL----SRCGNLDEALRVILTM 666
             M   H +K  ++    V N L    +  G +DEA  VI TM
Sbjct: 441 --MLHGHIIKTKVDIDIAVANALVDTYAGVGMIDEAWSVIGTM 481



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 507 TC--ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
           TC   LS C +  SL+ G  IH  +I+  L     +  +L+ +YAK   +H+A+ +FD  
Sbjct: 17  TCLRVLSFC-NSNSLKEGICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRARHLFDEM 75

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
           P++++  +  ++S +       +AL LF  +   G  P+  T ++ L +C   G    G+
Sbjct: 76  PNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGM 135

Query: 625 EL 626
           ++
Sbjct: 136 QI 137


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  323 bits (827), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 175/522 (33%), Positives = 292/522 (55%), Gaps = 25/522 (4%)

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           WN++I  +       +A+ +F+ M   GV   + S++ +L A + L  + EG Q H    
Sbjct: 91  WNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXHGFLR 150

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------- 363
             G+  D  L + +I  Y K G L  A  VF RM +RD V++N +I  YV+ G       
Sbjct: 151 KTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARE 210

Query: 364 --------QSDVVVASSIVDMYA-KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
                   + +++  +S+++ YA + + +D A  +F+ +  +D++ WN+L+  Y   GR 
Sbjct: 211 LFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRI 270

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
            +A  LF +M       ++++W +++ G+ + G +++AK +F QM     Q +++ + ++
Sbjct: 271 EDAKDLFDKMPRR----DVVTWATMVDGYAKLGFVHQAKSLFDQMP----QRDVVAYNSM 322

Query: 475 ISGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           ++G  QN    EAI  F +M  E+ + P  TT+   LSA   +  L     +H Y +   
Sbjct: 323 MAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKK 382

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
             L   +  +L+DMY+KCG+I QA  VF+   +K +  +NAMI G A+HGL   A  +  
Sbjct: 383 FLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLL 442

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            ++++ I PD ITF  +LNACSH+GLV EGL  F  M   H+++P ++H+GC+V++LSR 
Sbjct: 443 QIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRS 502

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G ++ A  +I  MP +P+  I  + L+ C    E E  E +++HL+     NP +YV LS
Sbjct: 503 GRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLS 562

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           N YA+ G W EV +VR +MKE+ ++K PGCSWI++   +H F
Sbjct: 563 NMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIELDGSVHEF 604



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 166/589 (28%), Positives = 258/589 (43%), Gaps = 118/589 (20%)

Query: 77  IGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVAS 136
           I P I  +LL  C    D+    +IHAR    G  F +N  + T++V+ +A      +A 
Sbjct: 14  ISPTI--QLLGTCKTSEDV---SKIHARKGTTG--FIKNTNLTTRIVLAFAASRRSYLAE 66

Query: 137 RLFCRLR-----------VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
              C              V++ F W A+I  +       KAL+ F  M ++GVS D F L
Sbjct: 67  FARCVFHEYHVSSXXSGNVEDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSL 126

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
             VLKAC  LG+V  G   HG++ K G    +F+ + LI +Y KCG L  AR+VFD M  
Sbjct: 127 SLVLKACSRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQ 186

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           R+ V++NSMI GYV+ GL E A  +F  M  E  +   +S  S+++  A        ++A
Sbjct: 187 RDSVSYNSMIDGYVKCGLIESARELFDLMPSE--KKNLISWNSMINGYA--------QRA 236

Query: 306 HAVAVINGM-----ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
             V + + +     E D +  +S+I+ Y K G +EDA+ +F +M  RD+VTW        
Sbjct: 237 DGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTW-------- 288

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
                     +++VD YAK   +  AK +F+ +  RDVV +N+++A Y       EA  +
Sbjct: 289 ----------ATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDI 338

Query: 421 FYQMQLEG-ISPNIISWNSVILGFLRNGQMNEAKDMFLQ--------------------- 458
           F  M+ E  +SP+  +   V+    + G++++A DM L                      
Sbjct: 339 FNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYS 398

Query: 459 -----MQSLGV-----QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
                 Q++GV       ++  W  +I GL  +  G  A     ++    IKP   T   
Sbjct: 399 KCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVG 458

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            L+AC+    ++ G           LC                      KR   I P   
Sbjct: 459 VLNACSHSGLVKEGL----------LCFEL------------------MKRKHKIEP--R 488

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNL-QQKGIDPDSITFTNILNACSH 616
           L  Y  M+   +  G     + L KNL ++  I+P+ + +   L ACSH
Sbjct: 489 LQHYGCMVDILSRSG----RIELAKNLIEEMPIEPNDVIWRTFLTACSH 533



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 89/416 (21%), Positives = 173/416 (41%), Gaps = 93/416 (22%)

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQM 449
           + D  LWN ++ +++      +A  LF+ M   G+S +  S + V+     LGF++ G  
Sbjct: 85  VEDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQ 144

Query: 450 NEA--------KDMFLQMQSLGV------------------------------------- 464
                       D+FLQ   +G+                                     
Sbjct: 145 XHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGL 204

Query: 465 --------------QPNLITWTTLISGLTQNSCGNE-AILFFQEMLETGIKPSTTTITCA 509
                         + NLI+W ++I+G  Q + G + A   F EM E  +    + I   
Sbjct: 205 IESARELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLI--- 261

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
                    + + + +   + R D+        ++VD YAK G +HQAK +FD  P +++
Sbjct: 262 -DGYVKHGRIEDAKDLFDKMPRRDVV----TWATMVDGYAKLGFVHQAKSLFDQMPQRDV 316

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFV 628
             YN+M++GY  +   +EA+ +F +++++  + PD  T   +L+A +  G +++ +++ +
Sbjct: 317 VAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHL 376

Query: 629 GMFSDHQVKPSMEHFG----CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
                + V+      G     ++++ S+CG++ +A+ V   +      H    +    + 
Sbjct: 377 -----YTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIH 431

Query: 685 SNETELAEYISEHLLQLE-----PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
                L E   + LLQ+E     PD+   +V + NA + SG   E     ++MK K
Sbjct: 432 G----LGESAFDMLLQIERRSIKPDDI-TFVGVLNACSHSGLVKEGLLCFELMKRK 482



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 117/257 (45%), Gaps = 30/257 (11%)

Query: 497 TGIKPSTTTI-TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV-------TSLVDMY 548
           + I P+   + TC  S   DV+ +   +   G++   +  L T IV        S +  +
Sbjct: 12  SSISPTIQLLGTCKTS--EDVSKIHARKGTTGFI--KNTNLTTRIVLAFAASRRSYLAEF 67

Query: 549 AKCGNIHQAKRVFDISPSKELP-VYNAMISGYAMHGL-AVEALALFKNLQQKGIDPDSIT 606
           A+C   H+       S + E P ++NA+I  ++ HG+   +AL LF  + + G+  D  +
Sbjct: 68  ARC-VFHEYHVSSXXSGNVEDPFLWNAVIKSHS-HGVEPRKALLLFFLMLKNGVSVDKFS 125

Query: 607 FTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
            + +L ACS  G V EG++        G++SD  ++       C++ L  +CG L  A +
Sbjct: 126 LSLVLKACSRLGFVKEGMQXHGFLRKTGIWSDLFLQ------NCLIGLYLKCGCLGFARQ 179

Query: 662 VILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721
           V   M    D+    S++   VK    E A  + + L+  E  N  ++ ++ N YA    
Sbjct: 180 VFDRMS-QRDSVSYNSMIDGYVKCGLIESARELFD-LMPSEKKNLISWNSMINGYAQRAD 237

Query: 722 WNEV-SQVRDIMKEKGL 737
             ++ S + D M EK L
Sbjct: 238 GVDIASNLFDEMPEKDL 254


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  322 bits (826), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 203/697 (29%), Positives = 334/697 (47%), Gaps = 97/697 (13%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           L  A R+F  +   +  SW +++  +   G    A     +M   G++   F L + L++
Sbjct: 45  LAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHARGLTASTFALGSALRS 104

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
             A      G  +  + +K G    VF AS+L+D+Y KCG L +AR+VFDGM  RN V+W
Sbjct: 105 AAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSW 164

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N++I GY ++    +A+ +F EM    + P   +  ++L       A  EG   ++    
Sbjct: 165 NALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALL-------ATVEGPSWYS---- 213

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVAS 371
               L   L   I  + S +GL                                  VV +
Sbjct: 214 ----LMQQLHGKIAKYGSALGL----------------------------------VVLN 235

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GIS 430
           + +  Y++C    +++++F+ I  RD++ WN++L AYA  G   EA R F +M  E G+ 
Sbjct: 236 AAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQ 295

Query: 431 PNIISWNSVI----------------------LG-----------------FLRNGQMNE 451
           P++ S+ SV+                      +G                 F  N  M +
Sbjct: 296 PDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMED 355

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
           A   F  +    V  + ++W ++++G + +   ++A+ FF+ M    +      ++ AL 
Sbjct: 356 AYKCFDSL----VFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALR 411

Query: 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
           +C+D+A LR GR +H  +I+        + +SL+ MY+KCG +  A++ F+ +       
Sbjct: 412 SCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVP 471

Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
           +N+M+ GYA HG A     LF  +    +  D +TF  +L A SH GLV+EG E+   M 
Sbjct: 472 WNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEILNSME 531

Query: 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
           + +++   MEH+ C V+L  R G LD+A  +I +MP  PDA +  +LL  C      ELA
Sbjct: 532 TRYKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHGNMELA 591

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
             ++ HL   EP     YV LS+ Y+  G W++ + V+ +MK +GL K PG SWI++  E
Sbjct: 592 SDVASHLFVAEPRQHSTYVLLSSMYSGRGMWSDRATVQKVMKNRGLSKVPGWSWIEVKNE 651

Query: 752 LHVFVACDRSHPKTEEIYATLALLGMHVRLVSKVFCS 788
           +H F A DRSHP+ +EI+  L +L      V++ FCS
Sbjct: 652 VHSFNADDRSHPRMDEIFDMLRML----LQVAQRFCS 684


>gi|2191182|gb|AAB61067.1| similar to N. tabacum membrane-associated salt-inducible protein
           (PID:g473874) [Arabidopsis thaliana]
          Length = 597

 Score =  322 bits (826), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 191/598 (31%), Positives = 303/598 (50%), Gaps = 75/598 (12%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV---------AWN 252
           + VH  +L +G    V +  SLI++Y  C D   AR VF+    R+ V         +WN
Sbjct: 51  KLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSASWN 110

Query: 253 SMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN 312
           ++I  + Q+G  E+A+ +F  M   G EP  VS+T  +SA + L  L+ GK+ H   V  
Sbjct: 111 TVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKK 170

Query: 313 GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASS 372
           G ELD                                                   V S+
Sbjct: 171 GFELDEY-------------------------------------------------VNSA 181

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           +VDMY KC+ ++ A++VF  +  + +V WN+++  Y   G S     +  +M +EG  P+
Sbjct: 182 LVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPS 241

Query: 433 IISWNSVILGFLRNGQM--------NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
             +  S+++   R+  +        N A+ +F + Q    +    +W  +IS     S G
Sbjct: 242 QTTLTSILMACSRSRNLLHGKFIHANLAETVFSKTQKDVAE----SWNVMISSYI--SVG 295

Query: 485 N--EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
           N  +A+  + +M+  G+KP   T T  L AC+ +A+L  G+ IH  +    L     +++
Sbjct: 296 NWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLS 355

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
           +L+DMY+KCGN  +A R+F+  P K++  +  MIS Y  HG   EAL  F  +Q+ G+ P
Sbjct: 356 ALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKP 415

Query: 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
           D +T   +L+AC HAGL++EGL+ F  M S + ++P +EH+ C++++L R G L EA  +
Sbjct: 416 DGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEI 475

Query: 663 ILTMPCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721
           I   P   D A ++ +L S C    E  L + I+  L++  PD+   Y+ L N YA+   
Sbjct: 476 IQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLYASGES 535

Query: 722 WNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           W+   +VR  MKE GLRK PGCSWI++ +++  F A DRSH + E +Y  LALL  H+
Sbjct: 536 WDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRSHLRAENVYECLALLSGHM 593



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 222/448 (49%), Gaps = 39/448 (8%)

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK-NVF--------SWA 151
           +H RIL  G    R+  +   L+  Y  C     A  +F    ++ +V+        SW 
Sbjct: 53  VHQRILTLG--LRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSASWN 110

Query: 152 AIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV 211
            +I    + G +EKAL  F  M+  G  P++  L   + AC  L W+  G+ +H   +K 
Sbjct: 111 TVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKK 170

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
           GF+   +V S+L+DMYGKC  LE AR+VF  M  +++VAWNSMI GYV  G ++  + + 
Sbjct: 171 GFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEIL 230

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH---AVAVINGMELD-----NVLGSS 323
             M +EG  P++ ++TSIL A +    L  GK  H   A  V +  + D     NV+ SS
Sbjct: 231 NRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHANLAETVFSKTQKDVAESWNVMISS 290

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSD 366
            I+  +    +E  + + S  V+ D+VT+  ++ +  Q                   ++D
Sbjct: 291 YISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETD 350

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
            ++ S+++DMY+KC     A ++FNSI  +DVV W  +++AY   G+  EA   F +MQ 
Sbjct: 351 ELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQK 410

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGN 485
            G+ P+ ++  +V+      G ++E    F QM+S  G++P +  ++ +I  L +     
Sbjct: 411 FGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLL 470

Query: 486 EAILFFQEMLETGIKPSTTTITCALSAC 513
           EA    Q+  ET    +   ++   SAC
Sbjct: 471 EAYEIIQQTPETS--DNAELLSTLFSAC 496



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 138/342 (40%), Gaps = 86/342 (25%)

Query: 510 LSACTD-VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD------ 562
           L  CT+   SLR  + +H  ++   L     +  SL+++Y  C +   A+ VF+      
Sbjct: 37  LRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRS 96

Query: 563 ---ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS---- 615
              I  S     +N +IS +   G A +AL LF  ++  G +P+S++ T  ++ACS    
Sbjct: 97  DVYIWNSLMSASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLW 156

Query: 616 -------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP- 667
                  H   V +G EL      D  V  ++      V++  +C  L+ A  V   MP 
Sbjct: 157 LERGKEIHRKCVKKGFEL------DEYVNSAL------VDMYGKCDCLEVAREVFQKMPR 204

Query: 668 ---------------------------------CDPDAHIIGSLLSTCVKSNETELAEYI 694
                                              P    + S+L  C +S      ++I
Sbjct: 205 KSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFI 264

Query: 695 SEHLLQ-----LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN--------P 741
             +L +      + D   ++  + ++Y + G W +  +V D M   G++ +        P
Sbjct: 265 HANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLP 324

Query: 742 GCSW---IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            CS    ++ G+++H+ ++   S  +T+E+  + ALL M+ +
Sbjct: 325 ACSQLAALEKGKQIHLSIS--ESRLETDELLLS-ALLDMYSK 363


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  322 bits (826), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 185/582 (31%), Positives = 289/582 (49%), Gaps = 93/582 (15%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +H +++K       F+ + ++D+    G+ E A  +F G+   N   +N+MI  Y  N
Sbjct: 31  KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 90

Query: 262 GLNEEAIRVFYEMT-----LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
            +   AI V+ +M         + P + +   ++ + A L   D GKQ H          
Sbjct: 91  KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHG--------- 141

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376
                  +  F  K                                  S+ VV +S+V+M
Sbjct: 142 ------HVFKFGQK----------------------------------SNTVVENSLVEM 161

Query: 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           Y KC+ +D+A +VF  +  RD V                                   SW
Sbjct: 162 YVKCDSLDDAHRVFEEMTERDAV-----------------------------------SW 186

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           N++I G +R GQM  A+ +F +MQ       + +WT ++SG  +  C  +A+ FF+ M  
Sbjct: 187 NTLISGHVRLGQMRRARAIFEEMQD----KTIFSWTAIVSGYARIGCYADALEFFRRMQM 242

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
            GI+P   ++   L  C  + +L  G+ IH Y  +        +  +L++MYAKCG+I Q
Sbjct: 243 VGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQ 302

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
            +R+FD    +++  ++ MI G A HG A EA+ LF+ +Q+  I+P  ITF  +L AC+H
Sbjct: 303 GRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAH 362

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
           AGL+NEGL  F  M  D+ ++P +EH+GC+VNLL   G LD+AL ++  MP  PD+ I G
Sbjct: 363 AGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWG 422

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           SLLS+C      ++A    EHLL+LEP + GNYV LSN YA  G+W+ VS++R +M+ K 
Sbjct: 423 SLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKS 482

Query: 737 LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMH 778
           ++K PGCS I++   +  F + D S P ++ I   L LL MH
Sbjct: 483 MKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKLLVMH 524



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 168/366 (45%), Gaps = 60/366 (16%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASR-------------------- 137
           G+Q+H  + K G     N  VE  LV  Y KCD+LD A R                    
Sbjct: 136 GKQVHGHVFKFGQ--KSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGH 193

Query: 138 -----------LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
                      +F  ++ K +FSW AI+    R+G    AL  F  MQ  G+ PD   L 
Sbjct: 194 VRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLV 253

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           +VL  C  LG +  G+ +H Y  K GF   + V ++LI+MY KCG +++ R++FD M  R
Sbjct: 254 SVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKER 313

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           +V++W++MIVG   +G   EAI +F EM    +EP+ ++   +L+A A+   L+EG    
Sbjct: 314 DVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEG---- 369

Query: 307 AVAVINGMELDNVLGSSI------INFYSKVGLLEDAEVVFSRMVER-DIVTWNLLIASY 359
            +     M+ D  +   +      +N     G L+ A  +  +M  + D   W  L++S 
Sbjct: 370 -LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSC 428

Query: 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
              G   + V +  ++   + E  D      N ++L ++         YADLG+    SR
Sbjct: 429 RSHGNLKIAVIA--MEHLLELEPADTG----NYVLLSNL---------YADLGKWDGVSR 473

Query: 420 LFYQMQ 425
           +   M+
Sbjct: 474 MRKLMR 479



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 204/443 (46%), Gaps = 58/443 (13%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           ++IHA I+K     +++ ++ TK+V         + A+ LF  +   N F + A+I    
Sbjct: 31  KKIHAHIVKFS--LSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYK 88

Query: 159 RVGLSEKALIGFVEM-----QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
              +   A+  + +M      E+ + PD F  P V+K+C  L     G+ VHG+V K G 
Sbjct: 89  HNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQ 148

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMI------------------ 255
                V +SL++MY KC  L++A +VF+ M  R+ V+WN++I                  
Sbjct: 149 KSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEE 208

Query: 256 -------------VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
                         GY + G   +A+  F  M + G+EP  +S+ S+L   A L AL+ G
Sbjct: 209 MQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELG 268

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           K  H  A   G   +  + +++I  Y+K G ++    +F +M ERD+++W+ +I      
Sbjct: 269 KWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANH 328

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G++               E I+  +++  + I   ++ +  LL A A  G   E  R F 
Sbjct: 329 GRAR--------------EAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFE 374

Query: 423 QMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
            M+ +  I P +  +  ++     +G++++A ++  +M     +P+   W +L+S    +
Sbjct: 375 SMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPR---KPDSPIWGSLLSSCRSH 431

Query: 482 SCGNEAILFFQEMLETGIKPSTT 504
                A++  + +LE  ++P+ T
Sbjct: 432 GNLKIAVIAMEHLLE--LEPADT 452



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 118/262 (45%), Gaps = 24/262 (9%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L  C ++  L+    IH ++++  L   + +VT +VD+    G    A  +F        
Sbjct: 21  LKDCPNIVELKK---IHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNA 77

Query: 570 PVYNAMISGYAMHGLAVEALALFKNL-----QQKGIDPDSITFTNILNACSHAGLVNEGL 624
            +YNAMI  Y  + + V A+ ++K +      +  I PD  TF  ++ +C+     + G 
Sbjct: 78  FLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGK 137

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
           ++   +F   Q   ++     +V +  +C +LD+A RV   M  + DA    +L+S  V+
Sbjct: 138 QVHGHVFKFGQKSNTVVE-NSLVEMYVKCDSLDDAHRVFEEM-TERDAVSWNTLISGHVR 195

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN---- 740
             +   A  I E   +++     ++ A+ + YA  G + +  +    M+  G+  +    
Sbjct: 196 LGQMRRARAIFE---EMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISL 252

Query: 741 ----PGCSW---IQIGEELHVF 755
               P C+    +++G+ +H++
Sbjct: 253 VSVLPDCAQLGALELGKWIHIY 274


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  322 bits (825), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 216/724 (29%), Positives = 354/724 (48%), Gaps = 131/724 (18%)

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKV----GFDGCVFVASSLIDMYGKCGDLEEA 236
           D+F LP   K+  AL  +   R++HG  L+     GF   V  A++L+  Y +CGDL  A
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAV--ANALLTAYARCGDLTAA 115

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
             +F+ M +R+ V +NS+I           A+    +M LEG   +  ++ S+L A ++L
Sbjct: 116 LALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHL 175

Query: 297 -DALDEGKQAHAVAVING-MELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERD----- 348
            + L  G++AHA A+ NG ++ D     +++++ Y+++GL++DA+++F  +   D     
Sbjct: 176 AEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGG 235

Query: 349 IVTWNLLIASYVQSGQ-------------------------------------------- 364
           +VTWN +++  VQSG+                                            
Sbjct: 236 VVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHA 295

Query: 365 -----SDVV----VASSIVDMYAKCERIDNAKQVFNSII--LRDVVLWNTLLAAYADLGR 413
                SD+     VAS++VDMYA  ER+  A++VF+ +    R + LWN ++  YA  G 
Sbjct: 296 YVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGM 355

Query: 414 SGEASRLFYQMQLE------------------------------------GISPNIISWN 437
             EA  LF +M+ E                                    G++ N    N
Sbjct: 356 DEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQN 415

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQP-NLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           +++  + R G M  A+ +F       ++P ++++W TLI+G       ++A    +EM +
Sbjct: 416 ALMDLYARLGDMEAARWIFA-----AIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQ 470

Query: 497 TG------------------IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
            G                  + P+  T+   L  C  +A+   G+ IHGY +RH L    
Sbjct: 471 QGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDI 530

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL-QQ 597
            + ++LVDMYAKCG +  ++ VFD  P + +  +N +I  Y MHGL  EA+ALF  +   
Sbjct: 531 AVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMS 590

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
               P+ +TF   L ACSH+G+V+ G+ELF  M  +H V+P+ +   C V++L R G LD
Sbjct: 591 NEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLD 650

Query: 658 EALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           EA  +I +M P +       S L  C       L E  +E L QLEPD   +YV L N Y
Sbjct: 651 EAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIY 710

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLG 776
           +A+G W + S+VR+ M+++G+ K PGCSWI++   +H F+A + +HP++  ++A +  L 
Sbjct: 711 SAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALW 770

Query: 777 MHVR 780
             +R
Sbjct: 771 ERMR 774



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 150/320 (46%), Gaps = 25/320 (7%)

Query: 62  EAVDLLTEMKCRNFQIGPEI-YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           EA++L   M+     +  E     +L  C         + +H  +LK G   A N +V+ 
Sbjct: 358 EALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRG--MADNPFVQN 415

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ------ 174
            L+  YA+   ++ A  +F  +  ++V SW  +I      G    A     EMQ      
Sbjct: 416 ALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFT 475

Query: 175 ----EDGVS--------PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
               EDG++        P+N  L  +L  C  L     G+ +HGY ++   D  + V S+
Sbjct: 476 DATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSA 535

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG-VEP 281
           L+DMY KCG L  +R VFD +  RNV+ WN +I+ Y  +GL +EAI +F  M +    +P
Sbjct: 536 LVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKP 595

Query: 282 TRVSVTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
             V+  + L+A ++   +D G +  H++   +G++    L +  ++   + G L++A  +
Sbjct: 596 NEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSI 655

Query: 341 FSRMV--ERDIVTWNLLIAS 358
            + M   E+ +  W+  + +
Sbjct: 656 ITSMEPGEQQVSAWSSFLGA 675


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  322 bits (825), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 209/781 (26%), Positives = 363/781 (46%), Gaps = 120/781 (15%)

Query: 81  IYGELLQGCVYKRDMYT-GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           +   L+  C     M+  G Q+H  + K+G     + YV T ++  Y     +  + ++F
Sbjct: 175 VIASLVTACGRSGSMFREGVQVHGFVAKSG--LLSDVYVSTAILHLYGVYGLVSCSRKVF 232

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             +  +NV SW +++     VG S+K              P+  +  ++ K         
Sbjct: 233 EEMPDRNVVSWTSLM-----VGYSDKG------------EPEEVI--DIYKD------ES 267

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            GR + G V+K G +  + V +SLI M G  G+++ A  +FD M  R+ ++WNS+   Y 
Sbjct: 268 LGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYA 327

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           QNG  EE+ R+F  M     E    +V+++LS   ++D    G+  H + V  G +    
Sbjct: 328 QNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVC 387

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS-------------- 365
           + ++++  Y+  G   +A +VF +M  +D+++WN L+AS+V  G+S              
Sbjct: 388 VCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSG 447

Query: 366 --------------------------------------DVVVASSIVDMYAKCERIDNAK 387
                                                 + ++ +++V MY K   +  ++
Sbjct: 448 KSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESR 507

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS------------ 435
           +V   +  RDVV WN L+  YA+     +A   F  M++EG+S N I+            
Sbjct: 508 RVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPG 567

Query: 436 ------------------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
                                    NS+I  + + G ++ ++D+F  + +     N+ITW
Sbjct: 568 DLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDN----RNIITW 623

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
             +++    +  G E +    +M   G+     + +  LSA   +A L  G+ +HG  ++
Sbjct: 624 NAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK 683

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
                 + I  +  DMY+KCG I +  ++   S ++ LP +N +IS    HG   E  A 
Sbjct: 684 LGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCAT 743

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  + + GI P  +TF ++L ACSH GLV++GL  +  +  D  ++P++EH  CV++LL 
Sbjct: 744 FHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLG 803

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G L EA   I  MP  P+  +  SLL++C      +     +E+L +LEP++   YV 
Sbjct: 804 RSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVL 863

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
            SN +A +GRW +V  VR  M  K ++K   CSW+++ +++  F   DR+HP+T EIYA 
Sbjct: 864 SSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAK 923

Query: 772 L 772
           L
Sbjct: 924 L 924



 Score =  219 bits (559), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 170/661 (25%), Positives = 297/661 (44%), Gaps = 131/661 (19%)

Query: 97  TGQQIHARILKNGDFFARNEYVETK-LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
           TG+ +HA  +K      R   + T  L+  Y K   +  A  LF  + V+N  SW  ++ 
Sbjct: 90  TGRAVHALCVKG---LVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMS 146

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG-WVGFGRAVHGYVLKVGFD 214
              RVGL  + +  F +M + G+ P +FV+ +++ ACG  G     G  VHG+V K G  
Sbjct: 147 GIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLL 206

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
             V+V+++++ +YG  G +  +RKVF+ M  RNVV+W S++VGY   G  EE I ++ + 
Sbjct: 207 SDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDE 266

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
           +L                         G+Q     V +G+E    + +S+I+    +G +
Sbjct: 267 SL-------------------------GRQIIGQVVKSGLESKLAVENSLISMLGSMGNV 301

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQ------------------------------ 364
           + A  +F +M ERD ++WN + A+Y Q+G                               
Sbjct: 302 DYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVL 361

Query: 365 ----------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                 S V V ++++ MYA   R   A  VF  +  +D++ WN
Sbjct: 362 GHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWN 421

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS---------------------VIL 441
           +L+A++ + GRS +A  L   M   G S N +++ S                     V+ 
Sbjct: 422 SLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVS 481

Query: 442 GFLRN--------------GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
           G   N              G+M+E++ + LQM     + +++ W  LI G  ++   ++A
Sbjct: 482 GLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP----RRDVVAWNALIGGYAEDEDPDKA 537

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVAS-LRNGRAIHGYLIRHDLCLPTPIVTSLVD 546
           +  FQ M   G+  +  T+   LSAC      L  G+ +H Y++         +  SL+ 
Sbjct: 538 LAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLIT 597

Query: 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606
           MYAKCG++  ++ +F+   ++ +  +NAM++  A HG   E L L   ++  G+  D  +
Sbjct: 598 MYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFS 657

Query: 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH----FGCVVNLLSRCGNLDEALRV 662
           F+  L+A +   ++ EG +L  G+     VK   EH    F    ++ S+CG + E +++
Sbjct: 658 FSEGLSAAAKLAVLEEGQQLH-GL----AVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM 712

Query: 663 I 663
           +
Sbjct: 713 L 713



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 106/202 (52%), Gaps = 14/202 (6%)

Query: 401 WNTLLAAYADLGRSG----EASRLFYQMQLEG-ISPNIISWNSVILGFLRNGQMNEAKDM 455
           WN  ++ +  +G S        R  + + ++G +  +++  N++I  + + G++  A+ +
Sbjct: 70  WNPEISCFDQIGFSQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHL 129

Query: 456 FLQMQSLGVQP--NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           F       + P  N ++W T++SG+ +     E + FF++M + GIKPS+  I   ++AC
Sbjct: 130 F------DIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTAC 183

Query: 514 TDVASL-RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
               S+ R G  +HG++ +  L     + T+++ +Y   G +  +++VF+  P + +  +
Sbjct: 184 GRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSW 243

Query: 573 NAMISGYAMHGLAVEALALFKN 594
            +++ GY+  G   E + ++K+
Sbjct: 244 TSLMVGYSDKGEPEEVIDIYKD 265


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  322 bits (825), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 196/598 (32%), Positives = 311/598 (52%), Gaps = 37/598 (6%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYG--KCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           + +H ++L+       + AS L+  Y    C  L  A+ VF+ +   N+  WN++I GY 
Sbjct: 89  KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYA 148

Query: 260 QNGLNEEAIRVFYEMTLEGVE-PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            +    ++  +F  M     E P + +   +  A++ L  L  G   H + +   +  D 
Sbjct: 149 SSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDL 208

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------ 366
            + +S+INFY   G  + A  VF+ M  +D+V+WN +I ++   G  D            
Sbjct: 209 FILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMK 268

Query: 367 -----VVVASSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEA 417
                V+   S++   AK   ++  + + + I        ++L N +L  Y   G   +A
Sbjct: 269 DVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDA 328

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT--WTTLI 475
             LF +M       +I+SW +++ G  + G  +EA  +F  M      P+  T  W  LI
Sbjct: 329 KDLFNKMS----EKDIVSWTTMLDGHAKLGNYDEAHCIFDAM------PHKWTAAWNALI 378

Query: 476 SGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           S   QN     A+  F EM L    KP   T+ CAL A   + ++  G  IH Y+ +HD+
Sbjct: 379 SAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDI 438

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
            L   + TSL+DMYAKCGN+++A  VF     K++ V++AMI   AM+G    AL LF +
Sbjct: 439 NLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSS 498

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           + +  I P+++TFTNIL AC+HAGLVNEG +LF  M   + + P ++H+ CVV++  R G
Sbjct: 499 MLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAG 558

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L++A   I  MP  P A + G+LL  C +    ELAE   ++LL+LEP N G +V LSN
Sbjct: 559 LLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSN 618

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
            YA +G W +VS +R +M++  ++K P CS I +   +H F+  D SHP +++IY+ L
Sbjct: 619 IYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKL 676



 Score =  186 bits (472), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 141/571 (24%), Positives = 255/571 (44%), Gaps = 94/571 (16%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYA--KCDALDVASRLFCRLRVKNVFSWAAII-G 155
           +QIHA +L+   F   + Y  +KL+  YA   C  L  A  +F ++   N++ W  +I G
Sbjct: 89  KQIHAHMLRTSRFC--DPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRG 146

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
                  ++  LI    +      P+ F  P + KA   L  +  G  +HG V+K     
Sbjct: 147 YASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSS 206

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            +F+ +SLI+ YG  G  + A +VF  M  ++VV+WN+MI  +   GL ++A+ +F EM 
Sbjct: 207 DLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEME 266

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
           ++ V+P  +++ S+LSA A    L+ G+   +    NG     +L +++++ Y K G + 
Sbjct: 267 MKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCIN 326

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
           DA+ +F++M E+DIV+W                  ++++D +AK    D A  +F+++  
Sbjct: 327 DAKDLFNKMSEKDIVSW------------------TTMLDGHAKLGNYDEAHCIFDAMPH 368

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQL-EGISPNIIS------------------W 436
           +    WN L++AY   G+   A  LF++MQL +   P+ ++                  W
Sbjct: 369 KWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHW 428

Query: 437 -----------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
                             S++  + + G +N+A ++F  ++    + ++  W+ +I  L 
Sbjct: 429 IHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVE----RKDVYVWSAMIGALA 484

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL---------I 530
               G  A+  F  MLE  IKP+  T T  L AC     +  G  +   +         I
Sbjct: 485 MYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQI 544

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVEAL 589
           +H +C        +VD++ + G + +A    +  P      V+ A++   + HG    A 
Sbjct: 545 QHYVC--------VVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAE 596

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
             ++NL +             L  C+H   V
Sbjct: 597 LAYQNLLE-------------LEPCNHGAFV 614



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 150/340 (44%), Gaps = 36/340 (10%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           +A+ L  EM+ ++ +        +L  C  K D+  G+ I + I  NG  F  +  +   
Sbjct: 257 KALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNG--FTEHLILNNA 314

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK---------------- 165
           ++  Y KC  ++ A  LF ++  K++ SW  ++  + ++G  ++                
Sbjct: 315 MLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAW 374

Query: 166 ---------------ALIGFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL 209
                          AL  F EMQ      PD   L   L A   LG + FG  +H Y+ 
Sbjct: 375 NALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIK 434

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR 269
           K   +    +A+SL+DMY KCG+L +A +VF  +  ++V  W++MI      G  + A+ 
Sbjct: 435 KHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALD 494

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFY 328
           +F  M    ++P  V+ T+IL A  +   ++EG+Q    +  + G+         +++ +
Sbjct: 495 LFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIF 554

Query: 329 SKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDV 367
            + GLLE A     +M +      W  L+ +  + G  ++
Sbjct: 555 GRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVEL 594



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 36/254 (14%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S FH++  LSK+ +  E V L+  + C + Q+G   +G  +   + K D+          
Sbjct: 392 SLFHEMQ-LSKDAKPDE-VTLICAL-CASAQLGAIDFGHWIHVYIKKHDINL-------- 440

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
                    N ++ T L+  YAKC  L+ A  +F  +  K+V+ W+A+IG     G  + 
Sbjct: 441 ---------NCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKA 491

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-------RAVHGYVLKVGFDGCVF 218
           AL  F  M E  + P+     N+L AC   G V  G         ++G V ++    CV 
Sbjct: 492 ALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCV- 550

Query: 219 VASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
                +D++G+ G LE+A    + M I      W +++    ++G N E   + Y+  LE
Sbjct: 551 -----VDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHG-NVELAELAYQNLLE 604

Query: 278 GVEPTRVSVTSILS 291
            +EP       +LS
Sbjct: 605 -LEPCNHGAFVLLS 617


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  322 bits (825), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 183/579 (31%), Positives = 306/579 (52%), Gaps = 23/579 (3%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G  +HG + K+GF     + ++LIDMY KCG+L+ A +VF GM  RNVV+W +++VG+++
Sbjct: 23  GVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLR 82

Query: 261 NGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           +G     +R+  EM T     P   ++++ L A   +     G   H + V  G +  +V
Sbjct: 83  HGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDV 142

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
           + SS++  YSK G + DA  VF    +   I TWN +++ Y  +G          + ++ 
Sbjct: 143 VASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGH-----GRDALLVFR 197

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS--PNIISW 436
           +  R +   Q        D   + +LL A + LG + E +++   M   G S   N I  
Sbjct: 198 EMRRHEGQHQP-------DEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILA 250

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
            +++  +++  ++  A  +F +++    + N+I WT ++ G  Q     EA+  F+    
Sbjct: 251 GALVDMYVKCRRLPVAMQVFERLE----RKNVIQWTAVVVGHAQEGQVTEALELFRRFWR 306

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
           +G +P +  ++  +    D A +  GR +H Y I+           S+VDMY KCG   +
Sbjct: 307 SGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDE 366

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A+R+F    +  +  +  M++G   HGL  EA+ALF+ ++  G++PD +T+  +L+ACSH
Sbjct: 367 AERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSH 426

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
           AGLV+E    F  +  D  V+P  EH+ C+V+LL R G L EA  +I TMP +P   +  
Sbjct: 427 AGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQ 486

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +LLS C    +  +     + LL ++ DNP NYV LSN  A +G W E  +VRD M+ +G
Sbjct: 487 TLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRG 546

Query: 737 LRKNPGCSWIQIGEELHVFVAC---DRSHPKTEEIYATL 772
           L+K  GCSW+++G+E+H F      + +HP+  +I   L
Sbjct: 547 LKKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDIRRVL 585



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 219/467 (46%), Gaps = 34/467 (7%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+       +  G Q+H  I K G  F  +  +   L+  Y KC  LD+A  +F  +R 
Sbjct: 10  LLRASARSSSLRGGVQLHGAITKMG--FGSDTMLGNNLIDMYVKCGELDLACEVFGGMRD 67

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRA 203
           +NV SW A++    R G +   L    EM+     +P+ + L   LKAC  +G    G  
Sbjct: 68  RNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVG 127

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG 262
           +HG  ++ G+     VASSL+ +Y K G + +AR+VFDG  +   +  WN+M+ GY   G
Sbjct: 128 IHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAG 187

Query: 263 LNEEAIRVFYEMTL-EGV-EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL--DN 318
              +A+ VF EM   EG  +P   +  S+L A + L A  EG Q HA    +G     + 
Sbjct: 188 HGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNA 247

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------- 364
           +L  ++++ Y K   L  A  VF R+  ++++ W  ++  + Q GQ              
Sbjct: 248 ILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRS 307

Query: 365 ---SDVVVASSIVDMYAKCERIDNAKQV----FNSIILRDVVLWNTLLAAYADLGRSGEA 417
               D  V SS+V + A    ++  +QV           DV   N+++  Y   G   EA
Sbjct: 308 GARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEA 367

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            R+F +M+    +PN++SW +++ G  ++G   EA  +F +M++ GV+P+ +T+  L+S 
Sbjct: 368 ERMFREMR----APNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSA 423

Query: 478 LTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGR 523
            +     +E   +F  +  +  ++P      C +        LR  R
Sbjct: 424 CSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREAR 470



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 198/419 (47%), Gaps = 28/419 (6%)

Query: 66  LLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV 123
           LL EM+  + +  P  Y     L+ C    D   G  IH   ++ G  +  ++ V + LV
Sbjct: 92  LLGEMRTAS-EAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAG--YQEHDVVASSLV 148

Query: 124 VFYAKCDALDVASRLFCRLRV-KNVFSWAAIIGLNCRVGLSEKALIGFVEMQ--EDGVSP 180
           + Y+K   +  A R+F    +   + +W A++      G    AL+ F EM+  E    P
Sbjct: 149 LVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQP 208

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC--VFVASSLIDMYGKCGDLEEARK 238
           D F   ++LKAC  LG    G  VH  +   GF       +A +L+DMY KC  L  A +
Sbjct: 209 DEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQ 268

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VF+ +  +NV+ W +++VG+ Q G   EA+ +F      G  P    ++S++   A+   
Sbjct: 269 VFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFAL 328

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           +++G+Q H   + +    D   G+SI++ Y K GL ++AE +F  M   ++V+W  ++  
Sbjct: 329 VEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNG 388

Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
             + G     +    V ++         +++    +  D V +  LL+A +  G   E  
Sbjct: 389 LGKHG-----LGREAVALF---------EEMRAGGVEPDEVTYLALLSACSHAGLVDECR 434

Query: 419 RLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           R F  ++ +  + P    +  ++    R G++ EA+D+   ++++ ++P +  W TL+S
Sbjct: 435 RYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDL---IRTMPMEPTVGVWQTLLS 490



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 131/256 (51%), Gaps = 2/256 (0%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPE--IYGELLQGCVYKRDMYTGQQIHARILKN 108
           +S  +     R+A+ +  EM+    Q  P+   +  LL+ C        G Q+HA +  +
Sbjct: 180 VSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTAS 239

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G   A N  +   LV  Y KC  L VA ++F RL  KNV  W A++  + + G   +AL 
Sbjct: 240 GFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALE 299

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F      G  PD+ VL +V+        V  GR VH Y +K      V   +S++DMY 
Sbjct: 300 LFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYL 359

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCG  +EA ++F  M A NVV+W +M+ G  ++GL  EA+ +F EM   GVEP  V+  +
Sbjct: 360 KCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLA 419

Query: 289 ILSASANLDALDEGKQ 304
           +LSA ++   +DE ++
Sbjct: 420 LLSACSHAGLVDECRR 435


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  322 bits (825), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 208/650 (32%), Positives = 319/650 (49%), Gaps = 105/650 (16%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           ++ASSL+ MY +CG LE A  VF  +  +++V W  +I  YV  G +  AI +F+ +  E
Sbjct: 63  YLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQE 122

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G+    +   S+LSA ++ + L  G+  H  AV  G+ L  ++ S++++ Y + G L DA
Sbjct: 123 GIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDA 182

Query: 338 EV--------------------------------VFSRMVE----RDIVTW--------- 352
                                             +F RM++     D+VT+         
Sbjct: 183 NALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSS 242

Query: 353 -NLLIASYVQSGQ---------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
              L AS V+            SDVVVA+++V+ YA+C  ID A++ F  +  R+ V W 
Sbjct: 243 SPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWT 302

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF--LRNGQMNEAKDMFLQMQ 460
           +++AA+  +G    A   F+ M LEG+ P   +  + + G   LR  ++ EA       Q
Sbjct: 303 SMIAAFTQIGHL-LAVETFHAMLLEGVVPTRSTLFAALEGCEDLRVARLVEAI-----AQ 356

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQE--------------------------- 493
            +GV  ++   T L+    +     +AI  F                             
Sbjct: 357 EIGVVTDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRST 416

Query: 494 ------MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL-----IRHDLCLPTPIVT 542
                  +E GI P       AL AC  +A+L  GR IH  +     +  D+ L   IV+
Sbjct: 417 FKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVS 476

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
               MY +CG++  A+  FD  P+++   +NAM+S  A HG   +   LF+ + Q+G D 
Sbjct: 477 ----MYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDA 532

Query: 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
           + I F N+L+AC+HAGLV  G E F  M  DH V P+ EH+GC+V+LL R G L +A  +
Sbjct: 533 ERIAFLNLLSACAHAGLVKAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGI 592

Query: 663 ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722
           +  MP  PDA    +L+  C    +TE   + +E +L+L  D+   YVAL N Y+A+GRW
Sbjct: 593 VQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRADHTAAYVALCNIYSAAGRW 652

Query: 723 NEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           ++ + VR IM + GLRK PG S I+I  ++H FV  DRSHP++E IYA L
Sbjct: 653 DDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAEL 702


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 302/559 (54%), Gaps = 67/559 (11%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
           +I  Y + G+L +AR +F+ +  + N V  N+M+ GY +N   +EA R+F  M      P
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAM------P 54

Query: 282 TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
            +                                 D V  +S++  Y++ G +      F
Sbjct: 55  AK---------------------------------DLVSWNSMLTGYTRNGEMRLGLQFF 81

Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
             M ERD+V+WNL++  +V+ G                   ++++ + F  I   + V W
Sbjct: 82  EEMAERDVVSWNLMVDGFVEVGD------------------LNSSWEFFEKIPNPNTVSW 123

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
            T+L  +A  G+  EA RLF QM +     N+++WN++I  +++N  ++EA  +F++M  
Sbjct: 124 VTMLCGFARFGKIAEARRLFDQMPIR----NVVAWNAMIAAYVQNCHVDEAISLFMEMP- 178

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
              + N I+WTT+I+G  +    +EA     +M     KP  +T  C LS+C  +A+L+ 
Sbjct: 179 ---EKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQV 234

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G+ +H  +++        +  +L+ MYAKCG+I  A+ +F      ++  +N++I+ YA+
Sbjct: 235 GKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYAL 294

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           +G   EAL LF  ++ +G+ PD +TF  IL+ACSH GL+++GL+LF  M   + ++P  E
Sbjct: 295 NGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAE 354

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701
           H+ C+V+LL R G L+EA +++  M  + +A I G+LL  C      ELA++ +E LL+ 
Sbjct: 355 HYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEF 414

Query: 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761
           EP    NYV LSN  A +GRW+EV++VR +MKEKG  K PG SWI++   +H F++ D +
Sbjct: 415 EPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPA 474

Query: 762 HPKTEEIYATLALLGMHVR 780
           HP+  E+   L  L  H+R
Sbjct: 475 HPRAVELCHILRSLTAHMR 493



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 172/407 (42%), Gaps = 91/407 (22%)

Query: 91  YKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSW 150
           Y R+   G+   AR L N   +  N      +V  YAK    D A RLF  +  K++ SW
Sbjct: 5   YTRN---GELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSW 61

Query: 151 AAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK 210
            +++    R G     L  F EM E  V   N ++   ++       VG   +   +  K
Sbjct: 62  NSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVE-------VGDLNSSWEFFEK 114

Query: 211 VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270
           +     V   + L   + + G + EAR++FD M  RNVVAWN+MI  YVQN   +EAI +
Sbjct: 115 IPNPNTVSWVTMLCG-FARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISL 173

Query: 271 FYEMTLEGV------------------------------EPTRVSVTSILSASANLDALD 300
           F EM  +                                +P + +    LS+ A+L AL 
Sbjct: 174 FMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQ 233

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
            GKQ H + + +G   D  + +++I  Y+K G +  AE++F  +   D+V+WN LIA+Y 
Sbjct: 234 VGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYA 293

Query: 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRL 420
            +G                                                GR  EA +L
Sbjct: 294 LNGN-----------------------------------------------GR--EALKL 304

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQP 466
           F++M++EG++P+ +++  ++      G +++   +F  M Q+  ++P
Sbjct: 305 FHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEP 351



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 10/304 (3%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+   +  ++ EA  LL +M  RN +     +   L  C +   +  G+Q+H  +
Sbjct: 184 SWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVGKQLHQLV 242

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K+G  +A + +V   L+  YAKC ++  A  LF  +   +V SW ++I      G   +
Sbjct: 243 MKSG--YATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGRE 300

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDGCVFVASSLI 224
           AL  F +M+ +GV+PD      +L AC  +G +  G +     V     +      + ++
Sbjct: 301 ALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMV 360

Query: 225 DMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           D+ G+ G LEEA ++  GM I  N   W +++     +G N E  +   E  LE  EP +
Sbjct: 361 DLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHG-NLELAKFAAEKLLE-FEPHK 418

Query: 284 VSVTSILS-ASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
            S   +LS   A     DE  +   +    G E     G S I   ++V      +    
Sbjct: 419 TSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQP--GWSWIELQNRVHAFLSEDPAHP 476

Query: 343 RMVE 346
           R VE
Sbjct: 477 RAVE 480


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 184/568 (32%), Positives = 313/568 (55%), Gaps = 47/568 (8%)

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE--EAIRVFYEMTLEGVEP 281
           I    + GD+  AR+VFD M  R+VV+WN+++    + G +    A R+F E       P
Sbjct: 22  ISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDEAM-----P 76

Query: 282 TR--VSVTSILS---ASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLE 335
           +R  VS  SI++   A  +LDA        A A   G    NV   ++++    ++G + 
Sbjct: 77  SRDVVSWNSIIAGCLAHGDLDA--------ASAYFAGAPERNVATWNAMLAGLVRLGRVV 128

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
           DA+ +F  M ER++V++                  +++VD  A+   ++ A++VF+S+  
Sbjct: 129 DAQRLFDEMPERNVVSY------------------TTMVDWLARRGEVERAREVFDSMPD 170

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
           R++V W  +++   + G   EA  LF  M       N+++  ++I G  + G ++ A+ +
Sbjct: 171 RNLVSWAAMISGCVENGMFVEARELFEAMP----EKNVVACTAMITGHCKQGDVDSARRL 226

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F  +++     ++I+W  +I+G   N  G EA+     M   G+KP   T+   L+AC+ 
Sbjct: 227 FDGIRA----KDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSA 282

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           +A LR G++ H   I+  L        +L+ MY+KCGN+ +++ VF    +K++  +N +
Sbjct: 283 LALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTI 342

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           I+ YA HG   + +ALF  ++  G+ PD ITF ++L+AC H G+V+  L+LF  M S + 
Sbjct: 343 IAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYA 402

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           + P  EH+ C+V++LSR G L++A   I  MP   + ++ GSLL  C      +L E  +
Sbjct: 403 ISPRAEHYACIVDILSRAGQLEKASSYIKHMPLKAEKNVWGSLLGACQIHGNVQLGELAA 462

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           + L+Q +  + G YV LSN YAA+G W +V+Q+R  MKE+G++K PG SW +IG E+H+F
Sbjct: 463 KMLVQSDSQSSGPYVILSNIYAAAGMWGQVNQIRGQMKERGVKKQPGYSWTEIGNEVHMF 522

Query: 756 VACDRSHPKTEEIYATLALLGMHVRLVS 783
           V  D SHP+  +I + L  +  H+R+V+
Sbjct: 523 VGGDASHPEMRKIISELRKISFHMRMVT 550



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 198/405 (48%), Gaps = 40/405 (9%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGD------FFA----RNEYVETKLVVFYAKCDALD 133
            L    +  RD+ +   I A  L +GD      +FA    RN      ++    +   + 
Sbjct: 69  RLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVV 128

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD-NFV-LPNVLKA 191
            A RLF  +  +NV S+  ++    R G  E+A   F  M      PD N V    ++  
Sbjct: 129 DAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSM------PDRNLVSWAAMISG 182

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C   G     R +   + +     C    +++I  + K GD++ AR++FDG+ A++V++W
Sbjct: 183 CVENGMFVEARELFEAMPEKNVVAC----TAMITGHCKQGDVDSARRLFDGIRAKDVISW 238

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N+MI GYV NG  EEA+R+   M  EGV+P   ++ ++L+A + L  L +GK  HA+A+ 
Sbjct: 239 NAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIK 298

Query: 312 NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVAS 371
             +E      ++++  YSK G + ++E+VF  +  +DIV+WN +IA+Y Q G+   V+A 
Sbjct: 299 AMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIA- 357

Query: 372 SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GIS 430
               ++ + E            ++ D + + ++L+A   +G    + +LF  M  +  IS
Sbjct: 358 ----LFHEMEVTG---------LIPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAIS 404

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
           P    +  ++    R GQ+ +A   +++   L  + N+  W +L+
Sbjct: 405 PRAEHYACIVDILSRAGQLEKASS-YIKHMPLKAEKNV--WGSLL 446


>gi|242092962|ref|XP_002436971.1| hypothetical protein SORBIDRAFT_10g012871 [Sorghum bicolor]
 gi|241915194|gb|EER88338.1| hypothetical protein SORBIDRAFT_10g012871 [Sorghum bicolor]
          Length = 726

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 199/682 (29%), Positives = 335/682 (49%), Gaps = 61/682 (8%)

Query: 138 LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW 197
           LF   R ++  SW A++  + R G    AL     M   G         +V+ AC     
Sbjct: 71  LFDGTRHRDAVSWNAMVSGHARRGNVPDALGTAARMHSSGQPFTEATFASVVGACARGRM 130

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
              G   HG V+K G +G   + +SL+D Y  C DL   R +F+ +  RN + W+ M+V 
Sbjct: 131 FRAGTQAHGQVIKSGCEGSAVIGASLLDFYSSCFDLRATRALFESLHQRNELLWSPMVVA 190

Query: 258 YVQNGLNEEAI----------------------------------RVFYEMTLE-GVEPT 282
            V+ GL  EA+                                  ++F ++  + G  P 
Sbjct: 191 LVRFGLLAEALDLLQITPARRDVFAWTAVISGYAKGTDQCCGKALQLFVKLLADDGAMPN 250

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
             +   +L A   L ALD G+  H   +  G   + ++ S++++ Y     L+DA +V++
Sbjct: 251 EYTYDCVLRACVRLGALDFGRSVHGCLIRCGFWCEQLITSALVDLYCTSDALDDALLVYN 310

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            +    ++T N LIA  +  G                  R ++AK VF+ +  +D   +N
Sbjct: 311 DLDRPPLITSNTLIAGLISIG------------------RTEDAKMVFSQMPEQDSGSYN 352

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
            ++ AYA  G+     R+F +M       N++S NS++   L+NG++ E   +F Q++  
Sbjct: 353 LMIKAYAMEGKLEHCRRMFEKMPKR----NMVSLNSMMSVLLQNGRLEEGLKLFKQIKD- 407

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
             + + +TW ++ISG  QN   +EA+  F  M    I  S +T +  L AC  + +L  G
Sbjct: 408 --ERDTVTWNSMISGYIQNDEPSEALKLFVVMCRLYIGCSPSTFSALLHACATIGTLEQG 465

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
           R IH +L +        + T+L DMY KCG +  A+  F    S  +  +  +++G A +
Sbjct: 466 RMIHAHLCKTSFDSNGHVGTALADMYFKCGCVIDARSAFTYVTSPNVASWTCLVNGLAQN 525

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           GL +EAL  F  + +  + P+ ITF  +L A + AGLVN+G+++F  M  +  + P+++H
Sbjct: 526 GLWLEALLQFGRMLKHHVSPNEITFLGLLMASARAGLVNKGMKIFYSM-ENFGLVPTVQH 584

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           + C V+LL R G+  EA + I  MP   D  I  +LL+ C  S + E+ E +++ L  + 
Sbjct: 585 YTCAVDLLGRTGHTREAEKFIYEMPLPADGIIWEALLTACWYSVDLEMGEKVAQRLFLMG 644

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
             +   YVA+SN YA  G+W +V +VR  M+    +K PGCSWI+I + +H+F+  D++H
Sbjct: 645 TKHRSAYVAMSNIYAKLGKWEDVVKVRTQMRSLNEKKEPGCSWIEIKDIVHIFLVDDQNH 704

Query: 763 PKTEEIYATLALLGMHVRLVSK 784
           P+ + +Y+ L  L  H+ L S+
Sbjct: 705 PERDHVYSMLEGLVSHISLHSE 726



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 133/585 (22%), Positives = 232/585 (39%), Gaps = 111/585 (18%)

Query: 9   PPNPKFSHTKPQKPLKLSQTHLTKLRES----------DNSYESLYKSYFHQISSLSKEK 58
           P  P+ SHT    P + +Q   T    S          D +      S+   +S  ++  
Sbjct: 36  PLQPR-SHTSSAVPDRAAQQRATPTEVSFPCGRTRYLFDGTRHRDAVSWNAMVSGHARRG 94

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
            + +A+     M           +  ++  C   R    G Q H +++K+G     +  +
Sbjct: 95  NVPDALGTAARMHSSGQPFTEATFASVVGACARGRMFRAGTQAHGQVIKSG--CEGSAVI 152

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGL---------------- 162
              L+ FY+ C  L     LF  L  +N   W+ ++    R GL                
Sbjct: 153 GASLLDFYSSCFDLRATRALFESLHQRNELLWSPMVVALVRFGLLAEALDLLQITPARRD 212

Query: 163 ------------------SEKALIGFVE-MQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
                               KAL  FV+ + +DG  P+ +    VL+AC  LG + FGR+
Sbjct: 213 VFAWTAVISGYAKGTDQCCGKALQLFVKLLADDGAMPNEYTYDCVLRACVRLGALDFGRS 272

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           VHG +++ GF     + S+L+D+Y     L++A  V++ +    ++  N++I G +  G 
Sbjct: 273 VHGCLIRCGFWCEQLITSALVDLYCTSDALDDALLVYNDLDRPPLITSNTLIAGLISIGR 332

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-S 322
            E+A  VF +M     E    S   ++ A A      EGK  H   +   M   N++  +
Sbjct: 333 TEDAKMVFSQMP----EQDSGSYNLMIKAYAM-----EGKLEHCRRMFEKMPKRNMVSLN 383

Query: 323 SIINFYSKVGLLEDAEVVFSRMV-ERDIVTWNLLIASYVQSGQ----------------- 364
           S+++   + G LE+   +F ++  ERD VTWN +I+ Y+Q+ +                 
Sbjct: 384 SMMSVLLQNGRLEEGLKLFKQIKDERDTVTWNSMISGYIQNDEPSEALKLFVVMCRLYIG 443

Query: 365 -----------------------------------SDVVVASSIVDMYAKCERIDNAKQV 389
                                              S+  V +++ DMY KC  + +A+  
Sbjct: 444 CSPSTFSALLHACATIGTLEQGRMIHAHLCKTSFDSNGHVGTALADMYFKCGCVIDARSA 503

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F  +   +V  W  L+   A  G   EA   F +M    +SPN I++  +++   R G +
Sbjct: 504 FTYVTSPNVASWTCLVNGLAQNGLWLEALLQFGRMLKHHVSPNEITFLGLLMASARAGLV 563

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           N+   +F  M++ G+ P +  +T  +  L +     EA  F  EM
Sbjct: 564 NKGMKIFYSMENFGLVPTVQHYTCAVDLLGRTGHTREAEKFIYEM 608



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 109/508 (21%), Positives = 219/508 (43%), Gaps = 53/508 (10%)

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG     R +FDG   R+ V+WN+M+ G+ + G   +A+     M   G   T  +  S+
Sbjct: 65  CG---RTRYLFDGTRHRDAVSWNAMVSGHARRGNVPDALGTAARMHSSGQPFTEATFASV 121

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           + A A       G QAH   + +G E   V+G+S+++FYS    L     +F  + +R+ 
Sbjct: 122 VGACARGRMFRAGTQAHGQVIKSGCEGSAVIGASLLDFYSSCFDLRATRALFESLHQRNE 181

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
           + W+ ++ + V+ G     + +  +D+     +I  A+        RDV  W  +++ YA
Sbjct: 182 LLWSPMVVALVRFG-----LLAEALDLL----QITPAR--------RDVFAWTAVISGYA 224

Query: 410 DLGRS--GEASRLFYQMQL-EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
                  G+A +LF ++   +G  PN  +++ V+   +R G ++  + +   +   G   
Sbjct: 225 KGTDQCCGKALQLFVKLLADDGAMPNEYTYDCVLRACVRLGALDFGRSVHGCLIRCGFWC 284

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
             +  + L+     +   ++A+L + ++    +  S T I   +S    +    + + + 
Sbjct: 285 EQLITSALVDLYCTSDALDDALLVYNDLDRPPLITSNTLIAGLIS----IGRTEDAKMVF 340

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
             +   D    +     ++  YA  G +   +R+F+  P + +   N+M+S    +G   
Sbjct: 341 SQMPEQD----SGSYNLMIKAYAMEGKLEHCRRMFEKMPKRNMVSLNSMMSVLLQNGRLE 396

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
           E L LFK ++    + D++T+ ++++        +E L+LFV M   + +  S   F  +
Sbjct: 397 EGLKLFKQIKD---ERDTVTWNSMISGYIQNDEPSEALKLFVVMCRLY-IGCSPSTFSAL 452

Query: 647 VNLLSRCGNLDEALRVILTMPC----DPDAHIIGSLLST-----CVKSNETELAEYISEH 697
           ++  +  G L++  R+I    C    D + H+  +L        CV    +      S  
Sbjct: 453 LHACATIGTLEQG-RMIHAHLCKTSFDSNGHVGTALADMYFKCGCVIDARSAFTYVTSP- 510

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEV 725
                  N  ++  L N  A +G W E 
Sbjct: 511 -------NVASWTCLVNGLAQNGLWLEA 531



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 7/210 (3%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIG--PEIYGELLQGCVYKRDMYTGQQIHARILKN 108
           IS   +  +  EA+ L   M CR + IG  P  +  LL  C     +  G+ IHA + K 
Sbjct: 418 ISGYIQNDEPSEALKLFVVM-CRLY-IGCSPSTFSALLHACATIGTLEQGRMIHAHLCKT 475

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
              F  N +V T L   Y KC  +  A   F  +   NV SW  ++    + GL  +AL+
Sbjct: 476 S--FDSNGHVGTALADMYFKCGCVIDARSAFTYVTSPNVASWTCLVNGLAQNGLWLEALL 533

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F  M +  VSP+      +L A    G V  G  +   +   G    V   +  +D+ G
Sbjct: 534 QFGRMLKHHVSPNEITFLGLLMASARAGLVNKGMKIFYSMENFGLVPTVQHYTCAVDLLG 593

Query: 229 KCGDLEEARK-VFDGMIARNVVAWNSMIVG 257
           + G   EA K +++  +  + + W +++  
Sbjct: 594 RTGHTREAEKFIYEMPLPADGIIWEALLTA 623


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 187/635 (29%), Positives = 320/635 (50%), Gaps = 84/635 (13%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVT 287
           K G L ++R +FD M  R+ ++W ++I GYV    + EA+ +F  M ++ G++  +  ++
Sbjct: 102 KQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMIS 161

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
             L A      +  G+  H  +V +G+     + S++I+ Y KVG +E    VF +M +R
Sbjct: 162 VALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKR 221

Query: 348 DIVTWNLLIASYV----------------------------------------------- 360
           ++V+W  +IA  V                                               
Sbjct: 222 NVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIH 281

Query: 361 -----QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                Q       V +++  MY KC + D   ++F  + + DVV W TL+  Y   G   
Sbjct: 282 TQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEE 341

Query: 416 EASRLFYQMQLEGISPN---------------IISWNSVILGF-LRNGQMNE-------- 451
            A   F +M+   +SPN               I  W   I G  LR G ++         
Sbjct: 342 HAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIV 401

Query: 452 ---AKDMFLQMQSL---GV-QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
              +K   L+  SL   G+ + ++I+W+T+I+  +Q     EA  +   M   G KP+  
Sbjct: 402 TLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEF 461

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
            ++  LS C  +A L  G+ +H +++   +     + ++L+ MY+KCG++ +A ++F+  
Sbjct: 462 ALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGM 521

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
               +  + AMI+GYA HG + EA+ LF+ +   G+ PD +TF  +L ACSHAG+V+ G 
Sbjct: 522 KINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGF 581

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
             F+ M +++Q+ PS EH+GC+++LL R G L EA  +I +MPC  D  +  +LL +C  
Sbjct: 582 YYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRV 641

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
             + +   + +E LL+L+P++ G ++AL+N YAA GRW E + +R +MK KG+ K  G S
Sbjct: 642 HGDVDRGRWTAEQLLRLDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWS 701

Query: 745 WIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           W+ + ++L+ FVA D++HP++E I   L LL  ++
Sbjct: 702 WVNVNDKLNAFVAGDQAHPQSEHITTVLELLSANI 736



 Score =  209 bits (533), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 162/612 (26%), Positives = 286/612 (46%), Gaps = 54/612 (8%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L+ C    ++  G+ +H   +K+G     + +V + L+  Y K   ++   R+F ++  +
Sbjct: 164 LKACGLGVNICFGELLHGFSVKSG--LINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKR 221

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           NV SW AII      G + +AL+ F EM    V  D+      LKA      +  G+A+H
Sbjct: 222 NVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIH 281

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
              +K GFD   FV ++L  MY KCG  +   ++F+ M   +VV+W ++I  YVQ G  E
Sbjct: 282 TQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEE 341

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
            A+  F  M    V P + +  +++SA ANL     G+Q H   +  G+     + +SI+
Sbjct: 342 HAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIV 401

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------QSDVV 368
             YSK GLL+ A +VF  +  +DI++W+ +IA Y Q G                 + +  
Sbjct: 402 TLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEF 461

Query: 369 VASSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
             SS++ +      ++  KQV   +    I  + ++ + L++ Y+  G   EAS++F  M
Sbjct: 462 ALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGM 521

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
           ++     NIISW ++I G+  +G   EA ++F ++ S+G++P+ +T+  +++  +     
Sbjct: 522 KIN----NIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMV 577

Query: 485 NEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
           +    +F  M  E  I PS     C +        L        ++IR   C    +V S
Sbjct: 578 DLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAE----HMIRSMPCYTDDVVWS 633

Query: 544 LVDMYAKC-GNIHQ----AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            +    +  G++ +    A+++  + P+     + A+ + YA  G   EA  + K ++ K
Sbjct: 634 TLLRSCRVHGDVDRGRWTAEQLLRLDPNSA-GTHIALANIYAAKGRWKEAAHIRKLMKSK 692

Query: 599 G-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657
           G I     ++ N          VN+ L  FV   +  Q  P  EH   V+ LLS   N+ 
Sbjct: 693 GVIKERGWSWVN----------VNDKLNAFV---AGDQAHPQSEHITTVLELLS--ANIG 737

Query: 658 EALRVILTMPCD 669
           +A + I ++  D
Sbjct: 738 DARQEIRSLNDD 749



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 164/319 (51%), Gaps = 6/319 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++  ++ +   AV+    M+  N       +  ++  C        G+QIH  +L+ G 
Sbjct: 331 ITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGL 390

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
             A +  V   +V  Y+K   L  AS +F  +  K++ SW+ II +  + G +++A    
Sbjct: 391 VDALS--VANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYL 448

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M+ +G  P+ F L +VL  CG++  +  G+ VH +VL +G D    V S+LI MY KC
Sbjct: 449 SWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKC 508

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +EEA K+F+GM   N+++W +MI GY ++G ++EAI +F +++  G++P  V+   +L
Sbjct: 509 GSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVL 568

Query: 291 SASANLDALDEGKQAHAVAVINGMEL--DNVLGSSIINFYSKVGLLEDAEVVFSRM-VER 347
           +A ++   +D G   + + + N  ++         II+   + G L +AE +   M    
Sbjct: 569 TACSHAGMVDLGFY-YFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYT 627

Query: 348 DIVTWNLLIASYVQSGQSD 366
           D V W+ L+ S    G  D
Sbjct: 628 DDVVWSTLLRSCRVHGDVD 646


>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  322 bits (824), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 181/551 (32%), Positives = 287/551 (52%), Gaps = 29/551 (5%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG--VEPTRVSVTSIL 290
           +  AR+ F+    R+    NSMI  +       +   +F ++  +     P   + T+++
Sbjct: 73  INHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALV 132

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
              A   A  EG   H + + NG+  D  + +++++ Y K G+L  A  VF  M  R  V
Sbjct: 133 KGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKV 192

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           +W  +I  Y                  A+C  +  A+++F+ +  RD+V +N ++  Y  
Sbjct: 193 SWTAVIVGY------------------ARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVK 234

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
           +G  G A  LF +M+      N++SW S++ G+  NG +  AK MF     L  + N+ T
Sbjct: 235 MGCVGLARELFNEMR----ERNVVSWTSMVSGYCGNGDVENAKLMF----DLMPEKNVFT 286

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W  +I G  QN   ++A+  F+EM    ++P+  T+ C L A  D+ +L  GR IH + +
Sbjct: 287 WNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFAL 346

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           R  L     I T+L+DMYAKCG I +AK  F+    +E   +NA+I+G+A++G A EAL 
Sbjct: 347 RKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALE 406

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           +F  + ++G  P+ +T   +L+AC+H GLV EG   F  M     + P +EH+GC+V+LL
Sbjct: 407 VFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNAM-ERFGIAPQVEHYGCMVDLL 465

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
            R G LDEA  +I TMP D +  I+ S L  C   N+   AE + + +++++ D  GNYV
Sbjct: 466 GRAGCLDEAENLIQTMPYDANGIILSSFLFACGYFNDVLRAERVLKEVVKMDEDVAGNYV 525

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            L N YA   RW +V  V+ +MK++G  K   CS I+IG     F A D  H   E I  
Sbjct: 526 MLRNLYATRQRWTDVEDVKQMMKKRGTSKEVACSVIEIGGSFIEFAAGDYLHSHLEVIQL 585

Query: 771 TLALLGMHVRL 781
           TL  L  H+++
Sbjct: 586 TLGQLSKHMKV 596



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 196/404 (48%), Gaps = 26/404 (6%)

Query: 58  KQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILKNGDFFARN 115
           +Q  +   L  +++ +     P+ Y    L++GC  +     G  +H  +LKNG  F  +
Sbjct: 102 RQFSQPFTLFRDLRRQAPPFTPDGYTFTALVKGCATRVATGEGTLLHGMVLKNGVCF--D 159

Query: 116 EYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE 175
            YV T LV  Y K   L  A ++F  + V++  SW A+I    R G   +A   F EM++
Sbjct: 160 LYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMED 219

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
             +   N ++   +K    +G VG  R +   + +      V   +S++  Y   GD+E 
Sbjct: 220 RDIVAFNAMIDGYVK----MGCVGLARELFNEMRERN----VVSWTSMVSGYCGNGDVEN 271

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A+ +FD M  +NV  WN+MI GY QN  + +A+ +F EM    VEP  V+V  +L A A+
Sbjct: 272 AKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVAD 331

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L ALD G+  H  A+   ++    +G+++I+ Y+K G +  A++ F  M ER+  +WN L
Sbjct: 332 LGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNAL 391

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
           I  +  +G      A   ++++A   R+       N + +  V      L+A    G   
Sbjct: 392 INGFAVNG-----CAKEALEVFA---RMIEEGFGPNEVTMIGV------LSACNHCGLVE 437

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           E  R F  M+  GI+P +  +  ++    R G ++EA+++   M
Sbjct: 438 EGRRWFNAMERFGIAPQVEHYGCMVDLLGRAGCLDEAENLIQTM 481



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 198/461 (42%), Gaps = 80/461 (17%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDAL-----------DVASRLFCRLRVKNVF 148
           QIHA IL++      N      L  F   C +L           + A R F     ++ F
Sbjct: 35  QIHAFILRHSLHSNLN-----LLTAFVTTCASLAASAKRPLAIINHARRFFNATHTRDTF 89

Query: 149 SWAAIIGLNCRVGLSEKALIGFVEMQEDG--VSPDNFVLPNVLKACGALGWVGFGRAVHG 206
              ++I  +       +    F +++      +PD +    ++K C      G G  +HG
Sbjct: 90  LCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALVKGCATRVATGEGTLLHG 149

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE 266
            VLK G    ++VA++L+DMY K G L  ARKVFD M  R+ V+W ++IVGY + G   E
Sbjct: 150 MVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSE 209

Query: 267 AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSII 325
           A R+F EM    +    V+  +++     +  +   ++     + N M   NV+  +S++
Sbjct: 210 ARRLFDEMEDRDI----VAFNAMIDGYVKMGCVGLARE-----LFNEMRERNVVSWTSMV 260

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS------------------DV 367
           + Y   G +E+A+++F  M E+++ TWN +I  Y Q+ +S                  +V
Sbjct: 261 SGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEV 320

Query: 368 VV----------------------------------ASSIVDMYAKCERIDNAKQVFNSI 393
            V                                   ++++DMYAKC  I  AK  F  +
Sbjct: 321 TVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGM 380

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
             R+   WN L+  +A  G + EA  +F +M  EG  PN ++   V+      G + E +
Sbjct: 381 TERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGR 440

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
             F  M+  G+ P +  +  ++  L +  C +EA    Q M
Sbjct: 441 RWFNAMERFGIAPQVEHYGCMVDLLGRAGCLDEAENLIQTM 481


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  322 bits (824), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 185/555 (33%), Positives = 294/555 (52%), Gaps = 55/555 (9%)

Query: 223  LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
            L+  Y  CG+    R +FD +  +NVV +N MI  YV N L  +A+ VF  M   G++P 
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 283  RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
              +   +L AS+  + L  G Q HA  V  G++L+                         
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLN------------------------- 1160

Query: 343  RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                    V V + ++ MY KC  +  A +V + +  RDVV WN
Sbjct: 1161 ------------------------VFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWN 1196

Query: 403  TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA--KDMFLQMQ 460
            +L+A  A  G+  +A  +  +M+L G+ P+  +  S++         N +  K+MF+++ 
Sbjct: 1197 SLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKL- 1255

Query: 461  SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
                  +L++W  +I+    NS   EA+  F +M +  + P   +I   L AC D+++L 
Sbjct: 1256 ---ANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALL 1312

Query: 521  NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
             GR IH Y++R  L     +  +L+DMYAKCG +  A+ VFD    +++  + +MIS Y 
Sbjct: 1313 LGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYG 1372

Query: 581  MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            M+G   +A++LF  +Q  G++PDSI F ++L+ACSHAGL++EG   F  M  + ++ P +
Sbjct: 1373 MNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRI 1432

Query: 641  EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
            EHF C+V+LL R G +DEA   I  MP +P+  + G+LLS C   +   +    ++ L Q
Sbjct: 1433 EHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQ 1492

Query: 701  LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
            L P+  G YV LSN YA +GRW +V+ VR IMK KG++K PG S  ++   +H F+A D+
Sbjct: 1493 LCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQ 1552

Query: 761  SHPKTEEIYATLALL 775
            SHP++++IY  L +L
Sbjct: 1553 SHPQSKQIYEELDVL 1567



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 221/444 (49%), Gaps = 32/444 (7%)

Query: 94   DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
            D+   +++H++I  + D  + N  +  KL+  YA C        +F  +  KNV  +  +
Sbjct: 1039 DIKYLKKLHSKICIDHDLHS-NPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVM 1097

Query: 154  IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
            I       L   AL+ F  M   G+ PD++  P VLKA      +  G  +H  V++VG 
Sbjct: 1098 IRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGL 1157

Query: 214  DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
            D  VFV + LI MYGKCG L EA +V D M  R+VV+WNS++ G  +NG  ++A+ V  E
Sbjct: 1158 DLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKE 1217

Query: 274  MTLEGVEPTRVSVTSILSASAN--LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
            M L G++P   ++ S+L A  N  LD +   K+         +   NV+    I  Y   
Sbjct: 1218 MELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVM----IAVYMNN 1273

Query: 332  GLLEDAEVVFSRMVERDIVTWNLLIAS-------------------YV--QSGQSDVVVA 370
             +  +A  +F +M +  +    + IAS                   YV  +  Q ++++ 
Sbjct: 1274 SMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLE 1333

Query: 371  SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
            ++++DMYAKC  ++ A++VF+ +  RDVV W ++++AY   G+  +A  LF +MQ  G++
Sbjct: 1334 NALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLN 1393

Query: 431  PNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
            P+ I++ SV+      G ++E +  F L  +   + P +  +  ++  L +    +EA  
Sbjct: 1394 PDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYG 1453

Query: 490  FFQEMLETGIKPSTTTITCALSAC 513
            F ++M    ++P+       LSAC
Sbjct: 1454 FIKQM---PMEPNERVWGALLSAC 1474



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 182/397 (45%), Gaps = 53/397 (13%)

Query: 82   YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
            Y  +L+      D++ G QIHA +++ G     N +V   L+  Y KC  L  A R+   
Sbjct: 1129 YPCVLKASSGSEDLWVGMQIHAAVVRVG--LDLNVFVGNGLISMYGKCGCLVEACRVLDZ 1186

Query: 142  LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
            +  ++V SW +++    R G  + AL    EM+  G+ PD   + ++L A          
Sbjct: 1187 MPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA---------- 1236

Query: 202  RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
                  V     D   FV                 +++F  +  +++V+WN MI  Y+ N
Sbjct: 1237 ------VTNTCLDNVSFV-----------------KEMFMKLANKSLVSWNVMIAVYMNN 1273

Query: 262  GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
             +  EA+ +F +M    V+P  +S+ S+L A  +L AL  G++ H   V   ++ + +L 
Sbjct: 1274 SMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLE 1333

Query: 322  SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
            +++I+ Y+K G LE A  VF +M  RD+V+W  +I++Y  +G+         V ++++ +
Sbjct: 1334 NALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGK-----GRDAVSLFSRMQ 1388

Query: 382  RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVI 440
             +          +  D + + ++L+A +  G   E    F  M  E  I P I  +  ++
Sbjct: 1389 DLG---------LNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMV 1439

Query: 441  LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
                R GQ++EA     QM    ++PN   W  L+S 
Sbjct: 1440 DLLGRAGQVDEAYGFIKQMP---MEPNERVWGALLSA 1473



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 30/190 (15%)

Query: 530  IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
            I HDL     +   L+  YA CG     + +FD  P K +  +N MI  Y  + L  +AL
Sbjct: 1052 IDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDAL 1111

Query: 590  ALFKNLQQKGIDPDSITFTNILNACS-----------HAGLVNEGLEL--FVGMFSDHQV 636
             +FKN+   GIDPD  T+  +L A S           HA +V  GL+L  FVG       
Sbjct: 1112 LVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVG------- 1164

Query: 637  KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
                     ++++  +CG L EA RV+  MPC  D     SL++ C ++ + + A  + +
Sbjct: 1165 -------NGLISMYGKCGCLVEACRVLDZMPCR-DVVSWNSLVAGCARNGQFDDALEVCK 1216

Query: 697  --HLLQLEPD 704
               LL L+PD
Sbjct: 1217 EMELLGLKPD 1226


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  322 bits (824), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 184/552 (33%), Positives = 293/552 (53%), Gaps = 55/552 (9%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L+  Y  CG+    R +FD +  +NVV +N MI  YV N L  +A+ VF  M   G++P 
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
             +   +L AS+  + L  G Q HA  V  G++L+                         
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLN------------------------- 171

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                   V V + ++ MY KC  +  A +V + +  RDVV WN
Sbjct: 172 ------------------------VFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWN 207

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA--KDMFLQMQ 460
           +L+A  A  G+  +A  +  +M+L G+ P+  +  S++         N +  K+MF+++ 
Sbjct: 208 SLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLA 267

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
           +     +L++W  +I+    NS   EA+  F +M +  + P   +I   L AC D+++L 
Sbjct: 268 N----KSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALL 323

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            GR IH Y++R  L     +  +L+DMYAKCG +  A+ VFD    +++  + +MIS Y 
Sbjct: 324 LGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYG 383

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
           M+G   +A++LF  +Q  G++PDSI F ++L+ACSHAGL++EG   F  M  + ++ P +
Sbjct: 384 MNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRI 443

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EHF C+V+LL R G +DEA   I  MP +P+  + G+LLS C   +   +    ++ L Q
Sbjct: 444 EHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQ 503

Query: 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           L P+  G YV LSN YA +GRW +V+ VR IMK KG++K PG S  ++   +H F+A D+
Sbjct: 504 LCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQ 563

Query: 761 SHPKTEEIYATL 772
           SHP++++IY  L
Sbjct: 564 SHPQSKQIYEEL 575



 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 223/447 (49%), Gaps = 38/447 (8%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D+   +++H++I  + D  + N  +  KL+  YA C        +F  +  KNV  +  +
Sbjct: 50  DIKYLKKLHSKICIDHDLHS-NPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVM 108

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I       L   AL+ F  M   G+ PD++  P VLKA      +  G  +H  V++VG 
Sbjct: 109 IRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGL 168

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           D  VFV + LI MYGKCG L EA +V D M  R+VV+WNS++ G  +NG  ++A+ V  E
Sbjct: 169 DLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKE 228

Query: 274 MTLEGVEPTRVSVTSILSASAN--LDALDEGKQAHAVAVINGMELDN---VLGSSIINFY 328
           M L G++P   ++ S+L A  N  LD +   K+         M+L N   V  + +I  Y
Sbjct: 229 MELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMF-------MKLANKSLVSWNVMIAVY 281

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG---------------------QSDV 367
               +  +A  +F +M +  +    + IAS + +                      Q ++
Sbjct: 282 MNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNL 341

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           ++ ++++DMYAKC  ++ A++VF+ +  RDVV W ++++AY   G+  +A  LF +MQ  
Sbjct: 342 LLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDL 401

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
           G++P+ I++ SV+      G ++E +  F L  +   + P +  +  ++  L +    +E
Sbjct: 402 GLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDE 461

Query: 487 AILFFQEMLETGIKPSTTTITCALSAC 513
           A  F ++M    ++P+       LSAC
Sbjct: 462 AYGFIKQM---PMEPNERVWGALLSAC 485



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 183/397 (46%), Gaps = 53/397 (13%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  +L+      D++ G QIHA +++ G     N +V   L+  Y KC  L  A R+  +
Sbjct: 140 YPCVLKASSGSEDLWVGMQIHAAVVRVG--LDLNVFVGNGLISMYGKCGCLVEACRVLDQ 197

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  ++V SW +++    R G  + AL    EM+  G+ PD   + ++L A          
Sbjct: 198 MPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA---------- 247

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
                 V     D   FV                 +++F  +  +++V+WN MI  Y+ N
Sbjct: 248 ------VTNTCLDNVSFV-----------------KEMFMKLANKSLVSWNVMIAVYMNN 284

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
            +  EA+ +F +M    V+P  +S+ S+L A  +L AL  G++ H   V   ++ + +L 
Sbjct: 285 SMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLE 344

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +++I+ Y+K G LE A  VF +M  RD+V+W  +I++Y  +G+         V ++++ +
Sbjct: 345 NALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGK-----GRDAVSLFSRMQ 399

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVI 440
            +          +  D + + ++L+A +  G   E    F  M  E  I P I  +  ++
Sbjct: 400 DLG---------LNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMV 450

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
               R GQ++EA     QM    ++PN   W  L+S 
Sbjct: 451 DLLGRAGQVDEAYGFIKQMP---MEPNERVWGALLSA 484



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 30/190 (15%)

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
           I HDL     +   L+  YA CG     + +FD  P K +  +N MI  Y  + L  +AL
Sbjct: 63  IDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDAL 122

Query: 590 ALFKNLQQKGIDPDSITFTNILNACS-----------HAGLVNEGLEL--FVGMFSDHQV 636
            +FKN+   GIDPD  T+  +L A S           HA +V  GL+L  FVG       
Sbjct: 123 LVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVG------- 175

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
                    ++++  +CG L EA RV+  MPC  D     SL++ C ++ + + A  + +
Sbjct: 176 -------NGLISMYGKCGCLVEACRVLDQMPCR-DVVSWNSLVAGCARNGQFDDALEVCK 227

Query: 697 --HLLQLEPD 704
              LL L+PD
Sbjct: 228 EMELLGLKPD 237


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  321 bits (823), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 195/600 (32%), Positives = 321/600 (53%), Gaps = 38/600 (6%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDM--YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           + +H  +L+       + AS L     +     L+ ARKVFD +   N+ +WN +I    
Sbjct: 156 KQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALA 215

Query: 260 QNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            +    +++ VF  M  +    P + +   ++ A A       GK  H +A+      D 
Sbjct: 216 TSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDV 275

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVE---RDIVTWNLLIASYVQSGQSDVVV------ 369
            + +S+I+FY+  G L+ A +VF  M+E   +DIV+WN ++  +VQ G  D  +      
Sbjct: 276 FVLNSLIHFYASCGHLDLAYLVFE-MIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERM 334

Query: 370 --------ASSIVDMYAKCERIDN---AKQVFNSI----ILRDVVLWNTLLAAYADLGRS 414
                   A ++V + + C +  N    ++V + I    ++ ++ + N  +  +   G  
Sbjct: 335 RNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEV 394

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
             A  LF  M+      +++SW ++I G+ +  +   A+D+F  M     + ++  W  L
Sbjct: 395 EIARGLFDNME----KRDVVSWTTIIDGYAKMSEHGIARDIFDSMP----RKDIPAWNVL 446

Query: 475 ISGLTQNSCGNEAILFFQEM--LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           ISG  Q+    EA+  F+E+   ++G +P   T+   LSAC  + ++  G  IHGY+ + 
Sbjct: 447 ISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKE 506

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
            + L   + TSL+DMY+K G++ +A  VF    +K++ V++AMI+G AMHG    A+ LF
Sbjct: 507 RIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELF 566

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
            ++Q+  + P+S+TFTN+L ACSH+GLV+EG  LF  M   + V P  +H+ C+V++L R
Sbjct: 567 LDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGR 626

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G+L+EAL+ I  MP  P A + G+LL  C      ELAE     LL++EP N G YV L
Sbjct: 627 AGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLL 686

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           SN YA +G W  VS++R  M++ GL+K  GCS I+I   +H F+  D +HP + +IYA L
Sbjct: 687 SNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKL 746



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 144/541 (26%), Positives = 255/541 (47%), Gaps = 67/541 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           L Q C   + +   +QIHA++L+           E      ++   ALD A ++F ++  
Sbjct: 145 LFQQCTSFKQL---KQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQ 201

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRA 203
            N++SW  +I          ++++ F+ M  D    P+ F  P ++KA         G+A
Sbjct: 202 PNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKA 261

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN--VVAWNSMIVGYVQN 261
           VHG  +K  F   VFV +SLI  Y  CG L+ A  VF+ +   N  +V+WNSM+ G+VQ 
Sbjct: 262 VHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQG 321

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G  ++A+ +F  M  EGV P  V++ S++SA A    L  G++       N M ++  + 
Sbjct: 322 GYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVC 381

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           ++ I+ + K G +E A  +F  M +RD+V+W                  ++I+D YAK  
Sbjct: 382 NATIDMFVKCGEVEIARGLFDNMEKRDVVSW------------------TTIIDGYAKMS 423

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL--EGISPNIIS---- 435
               A+ +F+S+  +D+  WN L++ Y   GR  EA  +F ++QL   G  P+ ++    
Sbjct: 424 EHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLST 483

Query: 436 --------------W-----------------NSVILGFLRNGQMNEAKDMFLQMQSLGV 464
                         W                  S+I  + ++G + +A ++F    S+G 
Sbjct: 484 LSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVF---HSIG- 539

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
             ++  W+ +I+GL  +  G  AI  F +M ET +KP++ T T  L AC+    +  G+ 
Sbjct: 540 NKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKR 599

Query: 525 IHGYLIRHDLCLP-TPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMH 582
           +   + R    +P T   + +VD+  + G++ +A +  +  P +    V+ A++    +H
Sbjct: 600 LFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIH 659

Query: 583 G 583
           G
Sbjct: 660 G 660


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  321 bits (823), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 203/688 (29%), Positives = 341/688 (49%), Gaps = 108/688 (15%)

Query: 184 VLPNVLKACGALGWVGFGRAV---HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           VL ++ +AC        GR+V   H  V K G     F A+ L  +Y KC  L+ ARKVF
Sbjct: 6   VLVDLFQACNN------GRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVF 59

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT-LEGVEPTRVSVTSILSASANLDAL 299
           D     NV  WNS +  Y +    EE +R+F+ M    G  P   ++   L A A L  L
Sbjct: 60  DETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRML 119

Query: 300 DEGKQAHAVAVING-MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
           + GK  H  A  N  +  D  +GS+++  YSK G + +A  VF      D V W  ++  
Sbjct: 120 ELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTG 179

Query: 359 Y-----------------------------------------VQSG------------QS 365
           Y                                         V++G              
Sbjct: 180 YQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDG 239

Query: 366 DVVVASSIVDMYAK--CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
           D+ + +S++++YAK  CE+I  A  +F+ +  +DV+ W+T++A YA+   + EA  LF++
Sbjct: 240 DLPLVNSLLNLYAKTGCEKI--AANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHE 297

Query: 424 MQLEGISPNIIS-------------------------WNSVILGF----------LRNGQ 448
           M  +   PN ++                         W    L F          ++   
Sbjct: 298 MIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSC 357

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
            +EA D+F ++     + ++++W  L+SG  QN    +++  F+ ML  GI+P    +  
Sbjct: 358 PDEAVDLFQRLP----KKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVK 413

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
            L+A +++   +    +HGY++R        +  SL+++Y+KCG++  A ++F     ++
Sbjct: 414 ILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRD 473

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNL-QQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
           + ++++MI+ Y +HG   EAL +F  + +   + P+++TF +IL+ACSHAGLV EGL++F
Sbjct: 474 VVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIF 533

Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
             M  D+Q++P  EHFG +V+LL R G L +A+ +I  MP     H+ G+LL  C   + 
Sbjct: 534 DRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHN 593

Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
            E+ E  +++L  L+P + G Y+ LSN YA  G+W+ V+++R  +KE+GL+K  G S ++
Sbjct: 594 IEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVE 653

Query: 748 IGEELHVFVACDRSHPKTEEIYATLALL 775
           +   +H F+A DR HP +++IY  L  L
Sbjct: 654 VRGGVHSFLASDRFHPDSQKIYELLRKL 681



 Score =  268 bits (685), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 149/441 (33%), Positives = 237/441 (53%), Gaps = 33/441 (7%)

Query: 364  QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
            Q D  + +    MY    RID A  VF  I      LWN ++  +A  GR   +  L+ +
Sbjct: 749  QYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSK 808

Query: 424  MQLEGISPNIISWNSVI-----LGFLRNGQMNE--------AKDMF-------------- 456
            M  +G+ P+  ++   +     L  L+ G++          + D+F              
Sbjct: 809  MMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGD 868

Query: 457  -----LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
                 L    + V+ +L++WT++ISG   N   +E + FF  M  +G+ P+  +I   L 
Sbjct: 869  IEAARLVFDKMAVR-DLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLL 927

Query: 512  ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
            AC ++ +LR G   H Y+I+        + T+++DMY+KCG++  A+ +FD +  K+L  
Sbjct: 928  ACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVC 987

Query: 572  YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631
            ++AMI+ Y +HG   +A+ LF  + + G+ P  +TFT +L+ACSH+GL+ EG   F  M 
Sbjct: 988  WSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMT 1047

Query: 632  SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
             +  +   + ++ C+V+LL R G L EA+ +I  MP +PDA I GSLL  C   N  +LA
Sbjct: 1048 EEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLA 1107

Query: 692  EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEE 751
            E I++HL  L+P + G +V LSN YAA  RWNEV +VR +M  +G  K  G S ++   +
Sbjct: 1108 EKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQ 1167

Query: 752  LHVFVACDRSHPKTEEIYATL 772
            +H F   DRSHP+ E++YA L
Sbjct: 1168 VHKFGVGDRSHPQWEKLYAKL 1188



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 210/435 (48%), Gaps = 25/435 (5%)

Query: 99   QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
            ++ HA+I   G     +  + TK  + Y   + +D AS +F  +     F W  +I    
Sbjct: 737  KKTHAKIFAYG--LQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFA 794

Query: 159  RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
              G    +L  + +M E G+ PD F  P  LK+C  L  +  G+ +H +++  G    +F
Sbjct: 795  TDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLF 854

Query: 219  VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
            V ++L+DMY KCGD+E AR VFD M  R++V+W SMI GY  NG N E +  F  M   G
Sbjct: 855  VDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSG 914

Query: 279  VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
            V P RVS+ S+L A  NL AL +G+  H+  +  G E D ++ ++I++ YSK G L+ A 
Sbjct: 915  VIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLAR 974

Query: 339  VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
             +F     +D+V W+ +IASY   G                 + ID   Q+  + +    
Sbjct: 975  CLFDETAGKDLVCWSAMIASYGIHGHGR--------------KAIDLFDQMVKAGVRPSH 1020

Query: 399  VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL-RNGQMNEAKDMFL 457
            V +  +L+A +  G   E    F  M  E +    +S  + ++  L R GQ++EA D+  
Sbjct: 1021 VTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDL-- 1078

Query: 458  QMQSLGVQPNLITWTTLISG--LTQNSCGNEAI---LFFQEMLETGIKPSTTTITCALSA 512
             ++++ V+P+   W +L+    +  N    E I   LF  + +  G     + I  A S 
Sbjct: 1079 -IENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSR 1137

Query: 513  CTDVASLRNGRAIHG 527
              +V  +R   A  G
Sbjct: 1138 WNEVEKVRKMMARRG 1152



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 176/732 (24%), Positives = 315/732 (43%), Gaps = 86/732 (11%)

Query: 24  KLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG 83
           K++    +K+ E D        S+   I+  +  +   EA++L  EM  + F+       
Sbjct: 258 KIAANLFSKMPEKD------VISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVV 311

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
             LQ C   R++  G++IH   +  G  F  +  V T L+  Y KC   D A  LF RL 
Sbjct: 312 SALQACAVSRNLEEGKKIHKIAVWKG--FELDFSVSTALIDMYMKCSCPDEAVDLFQRLP 369

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            K+V SW A++    + G++ K++  F  M  DG+ PD   +  +L A   LG       
Sbjct: 370 KKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALC 429

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +HGYV++ GF+  VFV +SLI++Y KCG L +A K+F GMI R+VV W+SMI  Y  +G 
Sbjct: 430 LHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGR 489

Query: 264 NEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-GMELDNVLG 321
             EA+ +F +M     V P  V+  SILSA ++   ++EG +     V +  +  D+   
Sbjct: 490 GGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHF 549

Query: 322 SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
             +++   ++G L  A  + +RM +      W  L+      G   +     + +  AK 
Sbjct: 550 GIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALL------GACRIHHNIEMGEAAAKN 603

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP----NIISW 436
               +       I+L ++         YA  G+    + L  +++  G+      +++  
Sbjct: 604 LFWLDPSHAGYYILLSNI---------YAVDGKWDNVAELRTRIKERGLKKMFGQSMVEV 654

Query: 437 NSVILGFLRNGQMN-EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
              +  FL + + + +++ ++  ++ L  Q     +   +  L  ++     + F+Q + 
Sbjct: 655 RGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHDT--GAVLQFWQRIK 712

Query: 496 ET-------GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
            T       G  P T TI+C   +C         +  H  +  + L   + I+T    MY
Sbjct: 713 ATESKYKTIGSAPGTDTISCF--SCL--------KKTHAKIFAYGLQYDSRILTKFAIMY 762

Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
                I  A  VF+  P+    ++N MI G+A  G  + +L L+  + +KG+ PD   F 
Sbjct: 763 VSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFP 822

Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
             L +C+             G+    + K   +H  C       CG             C
Sbjct: 823 FALKSCA-------------GLSDLQRGKVIHQHLVC-------CG-------------C 849

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
             D  +  +L+    K  + E A  + +   ++   +  ++ ++ + YA +G  +E    
Sbjct: 850 SNDLFVDAALVDMYAKCGDIEAARLVFD---KMAVRDLVSWTSMISGYAHNGYNSETLGF 906

Query: 729 RDIMKEKGLRKN 740
            D+M+  G+  N
Sbjct: 907 FDLMRSSGVIPN 918


>gi|357475531|ref|XP_003608051.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509106|gb|AES90248.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 763

 Score =  321 bits (823), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 195/683 (28%), Positives = 341/683 (49%), Gaps = 57/683 (8%)

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  +AK   L  A  +F  + ++ V SW  +I    + G   +AL     M    V  + 
Sbjct: 44  IAHHAKTGKLVEARHMFDEMPLRTVSSWNTMISGYSQWGKYTEALTLVSFMHSSCVKFNE 103

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
                 L AC   G +  G+ +H  + K G+     V S+L+  Y +C  + EA  VF+ 
Sbjct: 104 VSFSACLSACTRGGSLFLGKQIHSLLFKSGYQRFGPVGSALLHYYVQCCGIREAEMVFEE 163

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL-----------------EGVE----- 280
           +   N V W+ M+ GYVQ  +  +A+ +F +M +                 +G E     
Sbjct: 164 LRDENHVLWSLMLAGYVQRDMIGDAMEIFEKMPVRDVVAWTTLISGYAKREDGCERALDL 223

Query: 281 -----------PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329
                      P   ++  +L   A L  L  GK  H + + +G + DN + S++  FY 
Sbjct: 224 FGCMRRSSEVLPNEFTLDCVLRVCARLRILYVGKVVHGLCIKDGFDFDNSVSSALAEFYC 283

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQV 389
               ++DA+ V+  MV                 G++   VA S++       R+  A  +
Sbjct: 284 VSDAVDDAKRVYESMV-----------------GEACSNVADSLIGGLVSMGRVKEAGMI 326

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F  +  + ++  N ++  YA  G+  ++ +LF +M L+    ++ S N++I  + +NG++
Sbjct: 327 FYGLRDKTLISNNLMIKGYAMSGQFKKSKKLFEKMSLK----HLTSLNTMITVYSKNGEL 382

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           +EA  +F + +    + N +TW +++SG   N   +EA+  +  M    ++ S +T +  
Sbjct: 383 DEAVKLFDKTKG---ERNCVTWNSMMSGYIHNGEHSEALKLYVTMRRFLVEYSRSTFSVL 439

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
             AC  + S + G+ +H +L +        + T+LVD Y+KCG++  A+R F    S  +
Sbjct: 440 FRACAYLCSFQQGQLLHAHLAKTPYQENVYVGTALVDFYSKCGHLADAQRSFTSIFSPNV 499

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             + A+I+GYA HG   EA++ F+++  +G+ P++ TF  +L+ACSHAGLV+EGL+ F  
Sbjct: 500 AAWTALINGYAYHGCGSEAISRFRSMLDQGVVPNAATFVAVLSACSHAGLVDEGLKFFHS 559

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
           M  ++++ P++EH+ CVV+LL R G + EA   I+ MP   D  I G+LL+     N  E
Sbjct: 560 MQINYRITPTIEHYTCVVDLLGRSGRVKEAEEFIIQMPIKADGVIWGALLNASCFWNNVE 619

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
           L E  +  L  L+P++    V LSN YA  GRW + +++R  ++   LRK+ G SWI++ 
Sbjct: 620 LGERAAVKLFSLDPNSVSALVTLSNMYARRGRWGKKTKIRKRLQSLELRKDQGFSWIELN 679

Query: 750 EELHVFVACDRSHPKTEEIYATL 772
             +H+F   D +HP ++ IY T+
Sbjct: 680 NNVHLFSVEDTTHPYSDVIYKTV 702



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 128/526 (24%), Positives = 230/526 (43%), Gaps = 89/526 (16%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  S+  +  EA+ L++ M     +     +   L  C     ++ G+QIH+ + K+G 
Sbjct: 75  ISGYSQWGKYTEALTLVSFMHSSCVKFNEVSFSACLSACTRGGSLFLGKQIHSLLFKSG- 133

Query: 111 FFARNEYVETKLVVFYAKC-------------------------------DALDVASRLF 139
            + R   V + L+ +Y +C                               D +  A  +F
Sbjct: 134 -YQRFGPVGSALLHYYVQCCGIREAEMVFEELRDENHVLWSLMLAGYVQRDMIGDAMEIF 192

Query: 140 CRLRVKNVFSWAAII-GLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGW 197
            ++ V++V +W  +I G   R    E+AL  F  M+    V P+ F L  VL+ C  L  
Sbjct: 193 EKMPVRDVVAWTTLISGYAKREDGCERALDLFGCMRRSSEVLPNEFTLDCVLRVCARLRI 252

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR---NVVAWNSM 254
           +  G+ VHG  +K GFD    V+S+L + Y     +++A++V++ M+     NV   +S+
Sbjct: 253 LYVGKVVHGLCIKDGFDFDNSVSSALAEFYCVSDAVDDAKRVYESMVGEACSNVA--DSL 310

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           I G V  G  +EA  +FY +     + T +S   ++   A      + K+     +   M
Sbjct: 311 IGGLVSMGRVKEAGMIFYGLR----DKTLISNNLMIKGYAMSGQFKKSKK-----LFEKM 361

Query: 315 ELDNVLG-SSIINFYSKVGLLEDAEVVFSRMV-ERDIVTWNLLIASYVQSGQSDVVVASS 372
            L ++   +++I  YSK G L++A  +F +   ER+ VTWN +++ Y+ +G+      S 
Sbjct: 362 SLKHLTSLNTMITVYSKNGELDEAVKLFDKTKGERNCVTWNSMMSGYIHNGEH-----SE 416

Query: 373 IVDMYAKCER--IDNAKQVFNSIILR-------------------------DVVLWNTLL 405
            + +Y    R  ++ ++  F S++ R                         +V +   L+
Sbjct: 417 ALKLYVTMRRFLVEYSRSTF-SVLFRACAYLCSFQQGQLLHAHLAKTPYQENVYVGTALV 475

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
             Y+  G   +A R F  +     SPN+ +W ++I G+  +G  +EA   F  M   GV 
Sbjct: 476 DFYSKCGHLADAQRSFTSI----FSPNVAAWTALINGYAYHGCGSEAISRFRSMLDQGVV 531

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCAL 510
           PN  T+  ++S  +     +E + FF  M +   I P+    TC +
Sbjct: 532 PNAATFVAVLSACSHAGLVDEGLKFFHSMQINYRITPTIEHYTCVV 577



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 145/345 (42%), Gaps = 51/345 (14%)

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
           P++IS N  I    + G++ EA+ MF +M    V     +W T+ISG +Q     EA+  
Sbjct: 35  PHVISTNISIAHHAKTGKLVEARHMFDEMPLRTVS----SWNTMISGYSQWGKYTEALTL 90

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
              M  + +K +  + +  LSACT   SL  G+ IH  L +       P+ ++L+  Y +
Sbjct: 91  VSFMHSSCVKFNEVSFSACLSACTRGGSLFLGKQIHSLLFKSGYQRFGPVGSALLHYYVQ 150

Query: 551 CGNIHQAK-------------------------------RVFDISPSKELPVYNAMISGY 579
           C  I +A+                                +F+  P +++  +  +ISGY
Sbjct: 151 CCGIREAEMVFEELRDENHVLWSLMLAGYVQRDMIGDAMEIFEKMPVRDVVAWTTLISGY 210

Query: 580 AMHGLAVE-ALALFKNLQQKG-IDPDSITFTNILNACS-----HAGLVNEGLELFVGMFS 632
           A      E AL LF  +++   + P+  T   +L  C+     + G V  GL +  G   
Sbjct: 211 AKREDGCERALDLFGCMRRSSEVLPNEFTLDCVLRVCARLRILYVGKVVHGLCIKDGFDF 270

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
           D+ V  ++  F CV +       +D+A RV  +M  +  +++  SL+   V     + A 
Sbjct: 271 DNSVSSALAEFYCVSD------AVDDAKRVYESMVGEACSNVADSLIGGLVSMGRVKEAG 324

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
            I      L      +   +   YA SG++ +  ++ + M  K L
Sbjct: 325 MI---FYGLRDKTLISNNLMIKGYAMSGQFKKSKKLFEKMSLKHL 366



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 124/297 (41%), Gaps = 19/297 (6%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA+ L   M+    +     +  L + C Y      GQ +HA + K    +  N YV T 
Sbjct: 416 EALKLYVTMRRFLVEYSRSTFSVLFRACAYLCSFQQGQLLHAHLAKTP--YQENVYVGTA 473

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           LV FY+KC  L  A R F  +   NV +W A+I      G   +A+  F  M + GV P+
Sbjct: 474 LVDFYSKCGHLADAQRSFTSIFSPNVAAWTALINGYAYHGCGSEAISRFRSMLDQGVVPN 533

Query: 182 NFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
                 VL AC   G V  G +  H   +       +   + ++D+ G+ G ++EA +  
Sbjct: 534 AATFVAVLSACSHAGLVDEGLKFFHSMQINYRITPTIEHYTCVVDLLGRSGRVKEAEEFI 593

Query: 241 DGM-IARNVVAWNSMIVG---YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
             M I  + V W +++     +    L E A      + L  ++P  VS    LS   N+
Sbjct: 594 IQMPIKADGVIWGALLNASCFWNNVELGERA-----AVKLFSLDPNSVSALVTLS---NM 645

Query: 297 DALDE--GKQAHAVAVINGMELDNVLGSSIINFYSKVGL--LEDAEVVFSRMVERDI 349
            A     GK+      +  +EL    G S I   + V L  +ED    +S ++ + +
Sbjct: 646 YARRGRWGKKTKIRKRLQSLELRKDQGFSWIELNNNVHLFSVEDTTHPYSDVIYKTV 702



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/386 (18%), Positives = 152/386 (39%), Gaps = 75/386 (19%)

Query: 368 VVASSI-VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
           V++++I +  +AK  ++  A+ +F+ + LR V  WNT+++ Y+  G+  EA  L   M  
Sbjct: 37  VISTNISIAHHAKTGKLVEARHMFDEMPLRTVSSWNTMISGYSQWGKYTEALTLVSFMHS 96

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ--------------------- 465
             +  N +S+++ +    R G +   K +   +   G Q                     
Sbjct: 97  SCVKFNEVSFSACLSACTRGGSLFLGKQIHSLLFKSGYQRFGPVGSALLHYYVQCCGIRE 156

Query: 466 ----------PNLITWTTLISGLTQNSCGNEAILFFQEM-----------------LETG 498
                      N + W+ +++G  Q     +A+  F++M                  E G
Sbjct: 157 AEMVFEELRDENHVLWSLMLAGYVQRDMIGDAMEIFEKMPVRDVVAWTTLISGYAKREDG 216

Query: 499 ----------------IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
                           + P+  T+ C L  C  +  L  G+ +HG  I+        + +
Sbjct: 217 CERALDLFGCMRRSSEVLPNEFTLDCVLRVCARLRILYVGKVVHGLCIKDGFDFDNSVSS 276

Query: 543 SLVDMYAKCGNIHQAKRVFDISPSKELP-VYNAMISGYAMHGLAVEALALFKNLQQKGID 601
           +L + Y     +  AKRV++    +    V +++I G    G   EA  +F  L+ K + 
Sbjct: 277 ALAEFYCVSDAVDDAKRVYESMVGEACSNVADSLIGGLVSMGRVKEAGMIFYGLRDKTLI 336

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
            +++    ++   + +G   +  +LF  M   H     +     ++ + S+ G LDEA++
Sbjct: 337 SNNL----MIKGYAMSGQFKKSKKLFEKMSLKH-----LTSLNTMITVYSKNGELDEAVK 387

Query: 662 VILTMPCDPDAHIIGSLLSTCVKSNE 687
           +      + +     S++S  + + E
Sbjct: 388 LFDKTKGERNCVTWNSMMSGYIHNGE 413


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  321 bits (823), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 186/574 (32%), Positives = 301/574 (52%), Gaps = 61/574 (10%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGK--CGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           +HG VL+ G     +V+ +L+  Y      + + A KVF  +   NV  WN +I G ++N
Sbjct: 52  LHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLEN 111

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
               +AI  +  M ++   P + +  ++  A +   A+ EG+Q H   V +G+       
Sbjct: 112 NKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGI------- 163

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
                                                      SDV + S+ + MYA   
Sbjct: 164 ------------------------------------------GSDVHIKSAGIHMYASFG 181

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           R+++A+++F S    DVV WNT++  Y   G    A  LF QM ++    NI SWN +I 
Sbjct: 182 RLEDARKMFYSG-ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVK----NIGSWNVMIN 236

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
           G  + G + +A+ +F +M     + + I+W++++ G        EA+  FQ+M     +P
Sbjct: 237 GLAKGGNLGDARKLFDEMS----ERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRP 292

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
               ++  L+AC+++ ++  GR +H YL R+ + L   + T+L+DMYAKCG +     VF
Sbjct: 293 GRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVF 352

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           +    +E+  +NAMI G A+HG A +AL LF  LQ+  + P+ IT   +L AC+HAG V+
Sbjct: 353 EEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVD 412

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           +GL +F  M   + V P +EH+GC+V+LL R G   EA  +I +MP  P+A + G+LL  
Sbjct: 413 KGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGA 472

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C      +LAE + + LL+LEP N G YV LSN YA  GR+++VS++R +MK++G++  P
Sbjct: 473 CRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVP 532

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           G S + +   +H F   D SHP+ +EIY  L ++
Sbjct: 533 GVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKII 566



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 197/440 (44%), Gaps = 84/440 (19%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAK--CDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           Q+H  +L++G F  ++ YV   L+  YA       D A ++F  +   NVF W  +I   
Sbjct: 51  QLHGLVLRSGHF--QDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGC 108

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
                  KA+  +  M  D   P+ F  P + KAC     V  GR +HG+V+K G    V
Sbjct: 109 LENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDV 167

Query: 218 FVASSLIDMYGKCGDLEEARKVF--------------DG----------------MIARN 247
            + S+ I MY   G LE+ARK+F              DG                M  +N
Sbjct: 168 HIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKN 227

Query: 248 VVAWN-------------------------------SMIVGYVQNGLNEEAIRVFYEMTL 276
           + +WN                               SM+ GY+  G  +EA+ +F +M  
Sbjct: 228 IGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQR 287

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           E   P R  ++S+L+A +N+ A+D+G+  HA    N ++LD VLG+++++ Y+K G L+ 
Sbjct: 288 EETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDM 347

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
              VF  M ER+I TWN +I      G+     A   +++++K   +   +   N I L 
Sbjct: 348 GWEVFEEMKEREIFTWNAMIGGLAIHGR-----AEDALELFSK---LQEGRMKPNGITLV 399

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
            V      L A A  G   +  R+F  M +  G+ P +  +  ++    R+G  +EA+D+
Sbjct: 400 GV------LTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDL 453

Query: 456 FLQMQSLGVQPNLITWTTLI 475
              + S+ ++PN   W  L+
Sbjct: 454 ---INSMPMKPNAAVWGALL 470



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/445 (22%), Positives = 193/445 (43%), Gaps = 81/445 (18%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNG------------DFFARNEYVETKLVVFYA-- 127
           Y  L + C   + +  G+QIH  ++K+G              +A    +E    +FY+  
Sbjct: 135 YPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGE 194

Query: 128 --------------KCDALDVASRLFCRLRVKNV-------------------------- 147
                         KC  L+ A  LF ++ VKN+                          
Sbjct: 195 SDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEM 254

Query: 148 -----FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
                 SW++++      G  ++AL  F +MQ +   P  F+L +VL AC  +G +  GR
Sbjct: 255 SERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGR 314

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            VH Y+ +        + ++L+DMY KCG L+   +VF+ M  R +  WN+MI G   +G
Sbjct: 315 WVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHG 374

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVLG 321
             E+A+ +F ++    ++P  +++  +L+A A+   +D+G +    +    G++ +    
Sbjct: 375 RAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHY 434

Query: 322 SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
             +++   + GL  +AE + + M ++ +   W  L+ +    G  D  +A  +  +  + 
Sbjct: 435 GCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFD--LAERVGKILLEL 492

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP----NIISW 436
           E  ++ + V  S I             YA +GR  + S++   M+  GI      +I+  
Sbjct: 493 EPQNSGRYVLLSNI-------------YAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDL 539

Query: 437 NSVILGF-LRNGQMNEAKDMFLQMQ 460
           N  +  F + +G   + K+++ +++
Sbjct: 540 NGTVHEFKMGDGSHPQMKEIYRKLK 564



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 16/205 (7%)

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           + +EA+++  +M+    + G  I   +L  C     +  G+ +HA + +N      +  +
Sbjct: 274 RYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNS--IKLDAVL 331

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
            T L+  YAKC  LD+   +F  ++ + +F+W A+IG     G +E AL  F ++QE  +
Sbjct: 332 GTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRM 391

Query: 179 SPDNFVLPNVLKACGALGWVGFG-------RAVHGYVLKVGFDGCVFVASSLIDMYGKCG 231
            P+   L  VL AC   G+V  G       R  +G   ++   GC      ++D+ G+ G
Sbjct: 392 KPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGC------MVDLLGRSG 445

Query: 232 DLEEARKVFDGMIAR-NVVAWNSMI 255
              EA  + + M  + N   W +++
Sbjct: 446 LFSEAEDLINSMPMKPNAAVWGALL 470


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  321 bits (823), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 184/568 (32%), Positives = 304/568 (53%), Gaps = 47/568 (8%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           ++L+  Y +CG + EAR++F+ +  RNVV+WN+M+ GY +NG+ + A  +F  M      
Sbjct: 100 AALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMM------ 153

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS-------SIINFYSKVGL 333
           P R  V+ +   S  +      K+ H   V    EL + + S       ++++ Y ++G 
Sbjct: 154 PWRDDVSWLTMISGYI------KRKH---VREARELFDSMPSPPTSVCNALLSGYVELGY 204

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKC 380
           +  AEV+F +M  R+ V+WN++I  Y ++G             + DV+  ++I+  Y + 
Sbjct: 205 MRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQN 264

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             +D A +VF  +  RD V WNT++  +    R  +A +LF +M       + ISW++++
Sbjct: 265 GSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP----DRDQISWHAIL 320

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
            G+++ G M+ A   F +        + I+W TLISG         A+    EM+  G+K
Sbjct: 321 QGYVQQGDMDSANVWFPR----APNKDAISWNTLISGYKDEG----ALSLLSEMIRGGLK 372

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P   T++  +S C  + SL  G+ +H + I+        +++SL+ MY+KCG I +A +V
Sbjct: 373 PDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQV 432

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F++   ++   +NAMI+ YA HGLA EAL +F  + + G  PD  TF +IL+AC+H G +
Sbjct: 433 FELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYL 492

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            EG   F  M  D  + P  +H+ C+V+LL R G + +A      +P D       +L S
Sbjct: 493 YEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFS 552

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C    E +L E I+ ++L+  P + G Y  LSN YAA   W+  + VR  MKE+GL+K 
Sbjct: 553 ACNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKE 612

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEI 768
            GCSWI++  E+  F + D +HP  E+I
Sbjct: 613 TGCSWIELKGEVVTFSSNDSNHPLIEQI 640



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 105/211 (49%), Gaps = 23/211 (10%)

Query: 110 DFFARNEYVETKLVVF-----------------YAKCDALDVASRLFCRLRVKNVFSWAA 152
           D F RN+ ++  L +F                 Y +   +D A+  F R   K+  SW  
Sbjct: 290 DGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWNT 349

Query: 153 II-GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV 211
           +I G        E AL    EM   G+ PD   L  V+  C +L  +G G+ VH + +K 
Sbjct: 350 LISGYK-----DEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKT 404

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
           GF+    V SSLI MY KCG + EA +VF+ ++ R+ V WN+MI  Y  +GL +EA++VF
Sbjct: 405 GFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVF 464

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEG 302
             MT  G  P   +  SILSA A+   L EG
Sbjct: 465 DMMTKAGFRPDHATFLSILSACAHKGYLYEG 495



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 189/445 (42%), Gaps = 64/445 (14%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS   K K +REA +L   M          +   LL G V    M   + +    
Sbjct: 160 SWLTMISGYIKRKHVREARELFDSMP----SPPTSVCNALLSGYVELGYMRAAEVLF--- 212

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
              G    RN      ++  YA+  ++ +A RLF  +  K+V S  AI+    + G  + 
Sbjct: 213 ---GQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDA 269

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A   F +M                        V +   + G+V     D  + + S + D
Sbjct: 270 AWKVFKDMPHRDT-------------------VAWNTMMDGFVRNDRLDDALKLFSEMPD 310

Query: 226 M-----------YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
                       Y + GD++ A   F     ++ ++WN++I GY   G    A+ +  EM
Sbjct: 311 RDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGYKDEG----ALSLLSEM 366

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
              G++P + +++ ++S  A+L +L  GK  H  A+  G E D ++ SS+I+ YSK GL+
Sbjct: 367 IRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLI 426

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE-RIDNAKQVFNSI 393
            +A  VF  +++RD VTWN +IA+Y   G +D   A  + DM  K   R D+A   F SI
Sbjct: 427 SEASQVFELILQRDTVTWNAMIATYAYHGLAD--EALKVFDMMTKAGFRPDHA--TFLSI 482

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEA 452
                      L+A A  G   E    F  MQ +  + P    ++ ++    R+G +++A
Sbjct: 483 -----------LSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQA 531

Query: 453 KDMFLQMQSLGVQPNLITWTTLISG 477
            D   ++ S         W TL S 
Sbjct: 532 YDFTRRIPS---DHRTTAWETLFSA 553



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 13/180 (7%)

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           +A++VFD  P +    + A+++GYA  G   EA  LF  +  + +    +++  +++  +
Sbjct: 83  EARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNV----VSWNAMVSGYA 138

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
             G+V    ELF  M      +  +     +   + R  ++ EA  +  +MP  P + + 
Sbjct: 139 RNGMVKRARELFDMM----PWRDDVSWLTMISGYIKR-KHVREARELFDSMPSPPTS-VC 192

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
            +LLS  V+      AE +     Q++  NP ++  +   YA +G      ++ D M EK
Sbjct: 193 NALLSGYVELGYMRAAEVL---FGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEK 249


>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 202/597 (33%), Positives = 310/597 (51%), Gaps = 65/597 (10%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           +SL+  + K G ++EAR +F+ M  RNVV +N+M+ GYVQ G   +A R F EM     E
Sbjct: 80  TSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMP----E 135

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEV 339
              VS TS+L   AN   + E ++     + N M   NV+  +S++    + G LE+A  
Sbjct: 136 RNVVSWTSLLCGLANAGRIGEARE-----LFNVMPERNVVSWNSMLVGLIRSGQLEEARR 190

Query: 340 VFSRMVERDIVTWNLLIASYVQS-------------GQSDVVVASSIVDMYAKCERIDNA 386
           VF+ M  +  V+WN++IA Y +              G  +VV  +S++  Y +   +   
Sbjct: 191 VFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEG 250

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
             +F  +  R+VV W  ++  +A  G        FY+  L  +S N  S NS+I G++R 
Sbjct: 251 YCLFQKMPERNVVSWTAMIGGFAWNG--------FYKEALNSMSYNTQSCNSMINGYIRI 302

Query: 447 GQMNEAKDMFLQMQSLGVQPNL------------------------------ITWTTLIS 476
           GQ+ +A+ +F    ++ V+  +                              + WT ++S
Sbjct: 303 GQLEKAQSLF---DTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVS 359

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           G  QN    EA   F EM   G+ P  +T +  L A   +A L  GR  H  L++     
Sbjct: 360 GHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEF 419

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
              +  SL+ MYAKCG I  A  +F    S++L  +N+MI G++ HGL  EAL +F+ + 
Sbjct: 420 DLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAML 479

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
             G  P+S+TF  IL+ACSHAGL+N+G ELF  M     ++P +EH+ C+VNLL R G +
Sbjct: 480 TSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKV 539

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTC-VKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           +EA   I  +P +PD  I G+LL  C      T +A   ++ LL+L+P N   +V L N 
Sbjct: 540 EEAEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAKRLLELDPLNAPAHVVLCNI 599

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           +A+ G+  E  Q+R  M  KG+RK PGCSWI +  E +VF++ DR HP+ +E+ + L
Sbjct: 600 HASIGQRAEEGQLRKEMGLKGVRKVPGCSWILLKGEPYVFLSGDRIHPQADEMLSLL 656



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 141/543 (25%), Positives = 237/543 (43%), Gaps = 94/543 (17%)

Query: 18  KPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQI 77
           KPQ PL  S TH +KLR  D+           QI     ++++REA  +L EM  R    
Sbjct: 28  KPQIPL--SGTHYSKLRFDDS-----------QILECLSQQRLREARHMLDEMPNRGVLD 74

Query: 78  GPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASR 137
               +  LL    + ++ +  +   AR L       RN      ++  Y +C  L  A R
Sbjct: 75  RVVCWTSLLSK--FSKNGFIDE---ARALFE-IMPERNVVTYNAMLSGYVQCGRLSDACR 128

Query: 138 LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG-----FVEMQEDGVSPDNFVLPNVLKAC 192
            F  +  +NV SW +++      GL+    IG     F  M E  V   N +L  ++++ 
Sbjct: 129 FFEEMPERNVVSWTSLL-----CGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRS- 182

Query: 193 GAL-------------GWVGFGRAVHGYV-------LKVGFDGC----VFVASSLIDMYG 228
           G L               V +   + GY         +V FDG     V   +S+I  Y 
Sbjct: 183 GQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYC 242

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           + G+++E   +F  M  RNVV+W +MI G+  NG        FY+  L  +     S  S
Sbjct: 243 RAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNG--------FYKEALNSMSYNTQSCNS 294

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
           +++    +  L++ +       +     D +  +S+IN Y  VG +  A  +F+ M +RD
Sbjct: 295 MINGYIRIGQLEKAQSLFDTIPVR----DKISWTSMINGYFNVGQIAKACYLFNNMPDRD 350

Query: 349 IVTWNLLIASYVQS----------------GQSDVVVASSI-VDMYAKCERIDNAKQVFN 391
            V W ++++ +VQ+                G S +    SI +        +D  +Q F+
Sbjct: 351 AVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQ-FH 409

Query: 392 SIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
            ++++     D++L N+L++ YA  G  G+A  +F +M    IS ++ISWNS+I+GF  +
Sbjct: 410 CLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKM----ISRDLISWNSMIMGFSHH 465

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTT 505
           G  +EA  +F  M + G  PN +T+  ++S  +     N+    F  M +   I+P    
Sbjct: 466 GLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEH 525

Query: 506 ITC 508
             C
Sbjct: 526 YVC 528



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 155/318 (48%), Gaps = 16/318 (5%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           R++   T ++  Y     +  A  LF  +  ++  +W  ++  + +  L  +A   F EM
Sbjct: 318 RDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEM 377

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           +  GVSP N     +L A GA+ ++  GR  H  ++K  F+  + + +SLI MY KCG++
Sbjct: 378 RVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEI 437

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
            +A  +F  MI+R++++WNSMI+G+  +GL  EA++VF  M   G  P  V+   ILSA 
Sbjct: 438 GDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSAC 497

Query: 294 ANLDALDEGKQAH-AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVT 351
           ++   L++G +   A++ +  ++        ++N   + G +E+AE   S++  E D+  
Sbjct: 498 SHAGLLNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTI 557

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
           W  L+      G  +  VA        + + ++    V              L   +A +
Sbjct: 558 WGALLG-VCGFGMINTGVARRAAKRLLELDPLNAPAHV-------------VLCNIHASI 603

Query: 412 GRSGEASRLFYQMQLEGI 429
           G+  E  +L  +M L+G+
Sbjct: 604 GQRAEEGQLRKEMGLKGV 621


>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Glycine max]
          Length = 548

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/518 (33%), Positives = 277/518 (53%), Gaps = 55/518 (10%)

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           S   ++   A   AL  GK+ HA  V NG    NV+ S++++FY+  G L  A  +F ++
Sbjct: 29  SYAELIDMYARDRALHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLFDKI 88

Query: 345 VERDIVTWNLLIA---------------SYVQSGQS------------------------ 365
              ++  W  LI                S +Q+ Q                         
Sbjct: 89  PTTNVRRWIALIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRIT 148

Query: 366 ---------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
                          D  V+SS++ MY+KC ++++A++VF+ + ++D V  N ++A Y  
Sbjct: 149 GEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQ 208

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
            G + EA  L   M+L G+ PN+++WNS+I GF + G      ++F  M + GV+P++++
Sbjct: 209 QGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVS 268

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           WT++ISG  QN    EA   F++ML  G  P++ TI+  L AC   A +  GR IHGY +
Sbjct: 269 WTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPACATAARVSVGREIHGYAL 328

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
              +     + ++LVDMYAKCG I +A+ +F   P K    +N++I G+A HG   EA+ 
Sbjct: 329 VTGVEGDIYVRSALVDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEEAIE 388

Query: 591 LFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
           LF  ++++G+   D +TFT  L ACSH G    G  LF  M   + ++P +EH+ C+V+L
Sbjct: 389 LFNQMEKEGVAKLDHLTFTAALTACSHVGDFELGQRLFKIMQEKYSIEPRLEHYACMVDL 448

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
           L R G L EA  +I TMP +PD  + G+LL+ C      ELAE  + HL++LEP++  N 
Sbjct: 449 LGRAGKLHEAYCMIKTMPIEPDLFVWGALLAACRNHRHVELAEVAAMHLMELEPESAANP 508

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
           + LS+ YA +G+W +  +V+  +K+  LRK  G SWI+
Sbjct: 509 LLLSSVYADAGKWGKFERVKKRIKKGKLRKLQGLSWIE 546



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 145/476 (30%), Positives = 229/476 (48%), Gaps = 91/476 (19%)

Query: 75  FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV 134
           F+  PE Y EL+      R ++ G+++HA ++ NG  FAR   V + LV FY  C  L  
Sbjct: 23  FRSEPESYAELIDMYARDRALHAGKKLHAHLVTNG--FARFNVVASNLVSFYTCCGQLSH 80

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE-DGVSPDN-FVLPNVLKAC 192
           A +LF ++   NV  W A+IG   R G  + AL  F EMQ   G++P+  FV+P+VLKAC
Sbjct: 81  ARKLFDKIPTTNVRRWIALIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKAC 140

Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
           G +G    G  +HG++LK  F+   FV+SSLI MY KC  +E+ARKVFDGM  ++ VA N
Sbjct: 141 GHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALN 200

Query: 253 SMIVGYVQNGLNEEAI-----------------------------------RVFYEMTLE 277
           +++ GYVQ G   EA+                                    +F  M  +
Sbjct: 201 AVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQKGDQGRVSEIFRLMIAD 260

Query: 278 GVEPTRVSVTSILSASA----NLDALDEGKQA---------------------------- 305
           GVEP  VS TS++S       N +A D  KQ                             
Sbjct: 261 GVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPACATAARVSVG 320

Query: 306 ---HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
              H  A++ G+E D  + S++++ Y+K G + +A  +FSRM E++ VTWN +I  +   
Sbjct: 321 REIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFGFANH 380

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
           G  +       ++++ + E+   AK         D + +   L A + +G      RLF 
Sbjct: 381 GYCE-----EAIELFNQMEKEGVAKL--------DHLTFTAALTACSHVGDFELGQRLFK 427

Query: 423 QMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            MQ +  I P +  +  ++    R G+++EA   +  ++++ ++P+L  W  L++ 
Sbjct: 428 IMQEKYSIEPRLEHYACMVDLLGRAGKLHEA---YCMIKTMPIEPDLFVWGALLAA 480



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 121/283 (42%), Gaps = 8/283 (2%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS   +  + +EA D   +M    F         LL  C     +  G++IH   
Sbjct: 268 SWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPACATAARVSVGREIHGYA 327

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           L  G     + YV + LV  YAKC  +  A  LF R+  KN  +W +II      G  E+
Sbjct: 328 LVTG--VEGDIYVRSALVDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEE 385

Query: 166 ALIGFVEMQEDGVSP-DNFVLPNVLKACGALGWVGFGRAVHGYVL-KVGFDGCVFVASSL 223
           A+  F +M+++GV+  D+      L AC  +G    G+ +   +  K   +  +   + +
Sbjct: 386 AIELFNQMEKEGVAKLDHLTFTAALTACSHVGDFELGQRLFKIMQEKYSIEPRLEHYACM 445

Query: 224 IDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           +D+ G+ G L EA  +   M I  ++  W +++    +N  + E   V   M L  +EP 
Sbjct: 446 VDLLGRAGKLHEAYCMIKTMPIEPDLFVWGALLAA-CRNHRHVELAEV-AAMHLMELEPE 503

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
             +   +L +S   DA   GK       I   +L  + G S I
Sbjct: 504 S-AANPLLLSSVYADAGKWGKFERVKKRIKKGKLRKLQGLSWI 545


>gi|357147690|ref|XP_003574443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Brachypodium distachyon]
          Length = 859

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 204/687 (29%), Positives = 356/687 (51%), Gaps = 27/687 (3%)

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
           ETKL+ F++    LD A ++F  +  K++ +W+++IG     G+ ++ L+  V+M  +GV
Sbjct: 85  ETKLIAFHSSAGRLDDARKVFDGMSHKDLLAWSSMIGAYATRGMFDEVLVLAVKMVSEGV 144

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC---VFVASSLIDMYGKCGDLEE 235
            PD F++  +L+AC     +  G  +H   ++ GF G    V V++S++ MY KCG+L  
Sbjct: 145 LPDRFLITRILQACAYAEDLELGTVLHSMAIRRGFMGREKDVPVSNSVLVMYVKCGELGF 204

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           AR VF+ M  R++  WNSMI G  ++   EEA R+  +M  EG+EP  V+  +++S+ A 
Sbjct: 205 ARVVFEKMGRRDLGTWNSMIFGCCRSCKWEEARRLLDDMRKEGIEPGVVTWNTLISSYAR 264

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
              L+   +       +G+E D V  +S+++ +       +A   F RM    +    + 
Sbjct: 265 SGDLNVAVELLEQMEESGVEPDVVTWTSLVSGFVHSDRGVEALQCFIRMRLAGVEPNGMT 324

Query: 356 IASYVQSGQS---------------------DVVVASSIVDMYAKCERIDNAKQVFNSII 394
           IA  + +  S                     +V+  +S+VDMYAKC     A ++FN I 
Sbjct: 325 IACAISACASLKLLNQGSMLHCHAIKVGSVKNVLSGNSLVDMYAKCGETVAASRIFNQIP 384

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
            +D+  WN+++A YA  G  G+A  LF +M+  GI  N I+WN++I G++RNG    A +
Sbjct: 385 EKDIFSWNSMVAGYAQAGYCGKAYELFCKMENYGIRRNAITWNTMISGYIRNGDDERAFE 444

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           +F  M+S GV+ +  +W  LI+G   N   + A+  F++M    IKP   T+   + A  
Sbjct: 445 LFQTMESYGVKRDTASWNILIAGSVHNGYFDRALRIFRQMQAVLIKPDYITVLSIIPAFA 504

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
           ++ +    R IH  +  H+L +   I  +L++ Y+K G++  A  VFD   S+ +  +N 
Sbjct: 505 NLVAAWKVREIHACIFHHNLEIDGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWNC 564

Query: 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634
           +I  + +HG   E L  F  ++Q+G+ PD  T T ++ A     +V+EG E+F+ M  ++
Sbjct: 565 IIVAHLLHGSPTEVLNHFYKMKQQGVLPDHTTLTAVIKAYGMEAMVSEGREIFLNMEKNY 624

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694
            V P ++H+  +V+LL R G L EA  +I  MP  P+  +  +LL++ +      LA   
Sbjct: 625 NVTPDLDHYTAMVDLLGRSGRLQEAYELIDEMPLTPNLTVWEALLTSAIMHGNVRLAHLA 684

Query: 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           +  +  +EP +    + +S     +G+  +V ++    K + L     CS  +I   +++
Sbjct: 685 ATEMSDIEPSDLRIQMVVSGLQDLAGKSFDVPKLTVHNKGRMLDGIECCS-TEIKNIVYL 743

Query: 755 FVACDRSHPKTEEIYATLALLGMHVRL 781
           F   D  +  +E I A L L+ M + L
Sbjct: 744 FSTGD--NVASEHIVAELELIMMQIGL 768



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 142/488 (29%), Positives = 236/488 (48%), Gaps = 41/488 (8%)

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SS 323
           EE  R     ++   EP  VS T +++  ++   LD+ ++     V +GM   ++L  SS
Sbjct: 64  EEPARAHPSSSIASEEPRFVSETKLIAFHSSAGRLDDARK-----VFDGMSHKDLLAWSS 118

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS--------------------- 362
           +I  Y+  G+ ++  V+  +MV   ++    LI   +Q+                     
Sbjct: 119 MIGAYATRGMFDEVLVLAVKMVSEGVLPDRFLITRILQACAYAEDLELGTVLHSMAIRRG 178

Query: 363 ---GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
               + DV V++S++ MY KC  +  A+ VF  +  RD+  WN+++       +  EA R
Sbjct: 179 FMGREKDVPVSNSVLVMYVKCGELGFARVVFEKMGRRDLGTWNSMIFGCCRSCKWEEARR 238

Query: 420 LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           L   M+ EGI P +++WN++I  + R+G +N A ++  QM+  GV+P+++TWT+L+SG  
Sbjct: 239 LLDDMRKEGIEPGVVTWNTLISSYARSGDLNVAVELLEQMEESGVEPDVVTWTSLVSGFV 298

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
            +  G EA+  F  M   G++P+  TI CA+SAC  +  L  G  +H + I+        
Sbjct: 299 HSDRGVEALQCFIRMRLAGVEPNGMTIACAISACASLKLLNQGSMLHCHAIKVGSVKNVL 358

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
              SLVDMYAKCG    A R+F+  P K++  +N+M++GYA  G   +A  LF  ++  G
Sbjct: 359 SGNSLVDMYAKCGETVAASRIFNQIPEKDIFSWNSMVAGYAQAGYCGKAYELFCKMENYG 418

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           I  ++IT+  +++     G      ELF  M S + VK     +  ++      G  D A
Sbjct: 419 IRRNAITWNTMISGYIRNGDDERAFELFQTMES-YGVKRDTASWNILIAGSVHNGYFDRA 477

Query: 660 LRVILTMPC---DPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
           LR+   M      PD      II +  +        E+   I  H L+++        AL
Sbjct: 478 LRIFRQMQAVLIKPDYITVLSIIPAFANLVAAWKVREIHACIFHHNLEIDGKIAN---AL 534

Query: 713 SNAYAASG 720
            NAY+ SG
Sbjct: 535 INAYSKSG 542



 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 197/437 (45%), Gaps = 61/437 (13%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           +  C   + +  G  +H   +K G    +N      LV  YAKC     ASR+F ++  K
Sbjct: 329 ISACASLKLLNQGSMLHCHAIKVGS--VKNVLSGNSLVDMYAKCGETVAASRIFNQIPEK 386

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           ++FSW +++    + G   KA   F +M+  G+  +            A+ W        
Sbjct: 387 DIFSWNSMVAGYAQAGYCGKAYELFCKMENYGIRRN------------AITW-------- 426

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM----IARNVVAWNSMIVGYVQN 261
                          +++I  Y + GD E A ++F  M    + R+  +WN +I G V N
Sbjct: 427 ---------------NTMISGYIRNGDDERAFELFQTMESYGVKRDTASWNILIAGSVHN 471

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G  + A+R+F +M    ++P  ++V SI+ A ANL A  + ++ HA    + +E+D  + 
Sbjct: 472 GYFDRALRIFRQMQAVLIKPDYITVLSIIPAFANLVAAWKVREIHACIFHHNLEIDGKIA 531

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +++IN YSK G L  A  VF R   R+I++WN +I +++  G              +  E
Sbjct: 532 NALINAYSKSGDLAGACAVFDRHSSRNIISWNCIIVAHLLHG--------------SPTE 577

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVI 440
            +++  ++    +L D      ++ AY       E   +F  M+    ++P++  + +++
Sbjct: 578 VLNHFYKMKQQGVLPDHTTLTAVIKAYGMEAMVSEGREIFLNMEKNYNVTPDLDHYTAMV 637

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
               R+G++ EA ++  +M    + PNL  W  L++    +     A L   EM  + I+
Sbjct: 638 DLLGRSGRLQEAYELIDEMP---LTPNLTVWEALLTSAIMHGNVRLAHLAATEM--SDIE 692

Query: 501 PSTTTITCALSACTDVA 517
           PS   I   +S   D+A
Sbjct: 693 PSDLRIQMVVSGLQDLA 709


>gi|413938143|gb|AFW72694.1| hypothetical protein ZEAMMB73_533387 [Zea mays]
          Length = 663

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 202/649 (31%), Positives = 335/649 (51%), Gaps = 29/649 (4%)

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL-RVKNVFSWAAIIG 155
           T  Q+HA +L +G     + ++   L+  Y  C     A  L  ++ +  +V     ++ 
Sbjct: 30  TTAQLHALLLTSGHLHYDSPHL---LLYSYCACGCPFDAQNLLAQMPQPASVSVSNTLLR 86

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
               +G   +AL  + +M+      D+       KAC  L     GRAVHG  L  GF  
Sbjct: 87  SYSGLGFHRQALALYSQMRH----FDHLTFTFAAKACAGLRLRRHGRAVHGRALAAGFGS 142

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
             +V ++++ MY +C D+  A  VF  + +R  V+WN++I G V++G  E A+ VF  M 
Sbjct: 143 DAYVQNAIVSMYMRCRDVAAAEAVFVALPSRTTVSWNTVITGCVKDGRAERALEVFETMV 202

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
             GV   R SV S+L A A    L  G+  H +AV+ G+     + +++I+ Y K G LE
Sbjct: 203 DRGVCIDRASVVSVLPACAQARDLHTGRAVHRLAVVRGLGKYVAVKNALIDMYGKCGSLE 262

Query: 336 DAEVVFSR-MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
           DA  VF     ++D+V+W              V++ + +++ +A       ++ + +S  
Sbjct: 263 DARRVFDEDSYDKDVVSWT-------------VMIGAYVLNDHASKAFALGSEMLVSSEA 309

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAK 453
             + V    LL+A A L  SG+ ++  + + +  G+  +I+   +++  + + G M    
Sbjct: 310 QPNAVTMAHLLSACASL-LSGKHAKCTHALCIRLGLGSDIVVETALVDCYAKCGYMG-VI 367

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           DM ++  S   +    TW   ISG TQ   G +A+  F+ ML   ++P + T+   + A 
Sbjct: 368 DMVVEKGSRRTE----TWNAAISGYTQRDQGKKALALFKRMLAESVRPDSATMASVIPAY 423

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            + A L     IH  L+     + T I T L+D+YAK G++  A  +F   P K++  + 
Sbjct: 424 AESADLVQANNIHCCLLVRGCLVSTDIATGLIDLYAKAGDLGVAWELFQCLPEKDVVAWT 483

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            +I+GY MHG A  A+ L+  + + G+ P+++T  ++L++CSHAG+V+EGL LF  M   
Sbjct: 484 TVIAGYGMHGHAQTAMLLYSRMVELGVMPNTVTIASLLHSCSHAGMVDEGLRLFNDMHGV 543

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           H + P+ EH+ C+V++L R G ++EA R I  MP +P   +  SLL  CV     E  E 
Sbjct: 544 HGLMPNAEHYLCLVDMLGRAGRIEEAYRRIEDMPFEPTVSVWSSLLGACVLHENVEFGEV 603

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
            ++HL +LEPDN GNYV L   YAA+ RW++V  +R +M+   L K+PG
Sbjct: 604 AAKHLFELEPDNVGNYVLLGKVYAAAERWSDVQHLRRVMEGMDLHKDPG 652



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 197/433 (45%), Gaps = 33/433 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+   K+ +   A+++   M  R   I       +L  C   RD++TG+ +H   +  G 
Sbjct: 182 ITGCVKDGRAERALEVFETMVDRGVCIDRASVVSVLPACAQARDLHTGRAVHRLAVVRG- 240

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRV-KNVFSWAAIIGLNCRVGLSEKAL-I 168
              +   V+  L+  Y KC +L+ A R+F      K+V SW  +IG       + KA  +
Sbjct: 241 -LGKYVAVKNALIDMYGKCGSLEDARRVFDEDSYDKDVVSWTVMIGAYVLNDHASKAFAL 299

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
           G   +      P+   + ++L AC +L      +  H   +++G    + V ++L+D Y 
Sbjct: 300 GSEMLVSSEAQPNAVTMAHLLSACASLLSGKHAKCTHALCIRLGLGSDIVVETALVDCYA 359

Query: 229 KCGDLEEARKVFDGMI---ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           KCG +     V D ++   +R    WN+ I GY Q    ++A+ +F  M  E V P   +
Sbjct: 360 KCGYM----GVIDMVVEKGSRRTETWNAAISGYTQRDQGKKALALFKRMLAESVRPDSAT 415

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           + S++ A A    L +    H   ++ G  +   + + +I+ Y+K G L  A  +F  + 
Sbjct: 416 MASVIPAYAESADLVQANNIHCCLLVRGCLVSTDIATGLIDLYAKAGDLGVAWELFQCLP 475

Query: 346 ERDIVTWNLLIASYVQSG--QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           E+D+V W  +IA Y   G  Q+ +++ S +V++                 ++ + V   +
Sbjct: 476 EKDVVAWTTVIAGYGMHGHAQTAMLLYSRMVELG----------------VMPNTVTIAS 519

Query: 404 LLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
           LL + +  G   E  RLF  M  + G+ PN   +  ++    R G++ EA   + +++ +
Sbjct: 520 LLHSCSHAGMVDEGLRLFNDMHGVHGLMPNAEHYLCLVDMLGRAGRIEEA---YRRIEDM 576

Query: 463 GVQPNLITWTTLI 475
             +P +  W++L+
Sbjct: 577 PFEPTVSVWSSLL 589


>gi|15231402|ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13880
 gi|9294611|dbj|BAB02912.1| probable selenium-binding protein [Arabidopsis thaliana]
 gi|332641909|gb|AEE75430.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 207/730 (28%), Positives = 362/730 (49%), Gaps = 97/730 (13%)

Query: 138 LFCRLRVKNVFSWAA----IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACG 193
           +  + R K  F+  A    +  +  RVGL  + L    + +   +  + + +  + +   
Sbjct: 1   MLLQFRAKTFFNNIAQDSLVTLITKRVGLGYRFLSSLCQPKNTALDSEGYKI--LFQTAA 58

Query: 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
             G V  G+  HG+++K   + C+++ ++L++MY KC +L  AR++FD M  RN++++NS
Sbjct: 59  KSGSVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIISFNS 118

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           +I GY Q G  E+A+ +F E     ++  + +    L        LD G+  H + V+NG
Sbjct: 119 LISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNG 178

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS--------------- 358
           +     L + +I+ YSK G L+ A  +F R  ERD V+WN LI+                
Sbjct: 179 LSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGAAEEPLNLLA 238

Query: 359 ----------------------------YVQSGQS------------DVVVASSIVDMYA 378
                                       +++ G +            D+VV ++++DMYA
Sbjct: 239 KMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEFDIVVRTALLDMYA 298

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR-----SGEASRLFYQMQLEGISPNI 433
           K   +  A ++F+ +  ++VV +N +++ +  +       S EA +LF  MQ  G+ P+ 
Sbjct: 299 KNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSP 358

Query: 434 ISWNSVI--------LGFLRNGQMNEAKDMFLQMQSLGV--------------------- 464
            +++ V+        L + R       K+ F   + +G                      
Sbjct: 359 STFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCFAS 418

Query: 465 --QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
             + ++ +WT++I    QN     A   F+++  + I+P   T++  +SAC D A+L +G
Sbjct: 419 TSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAALSSG 478

Query: 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH 582
             I GY I+  +   T + TS + MYAK GN+  A +VF    + ++  Y+AMIS  A H
Sbjct: 479 EQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVATYSAMISSLAQH 538

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G A EAL +F++++  GI P+   F  +L AC H GLV +GL+ F  M +D+++ P+ +H
Sbjct: 539 GSANEALNIFESMKTHGIKPNQQAFLGVLIACCHGGLVTQGLKYFQCMKNDYRINPNEKH 598

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           F C+V+LL R G L +A  +IL+           +LLS+C    ++ + + ++E L++LE
Sbjct: 599 FTCLVDLLGRTGRLSDAENLILSSGFQDHPVTWRALLSSCRVYKDSVIGKRVAERLMELE 658

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
           P+  G+YV L N Y  SG  +   +VR++M+++G++K P  SWI IG + H F   D SH
Sbjct: 659 PEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEPALSWIVIGNQTHSFAVADLSH 718

Query: 763 PKTEEIYATL 772
           P ++ IY  L
Sbjct: 719 PSSQMIYTML 728


>gi|302817567|ref|XP_002990459.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
 gi|300141844|gb|EFJ08552.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
          Length = 830

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 203/723 (28%), Positives = 359/723 (49%), Gaps = 99/723 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF-CRLR 143
           ++  C     +  G+++H RI   G  F  +  V T LV  YAKC ++D A R+F  RL 
Sbjct: 115 VINACSESGSLAEGRRVHRRI--QGSDFEWSVDVGTALVRMYAKCGSVDEARRVFDNRLL 172

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            KN+ SW  ++      G  E+AL  F+EM ++GV+P+     +VL AC     +  GR 
Sbjct: 173 RKNIVSWTTMVSAYVERGCLEQALTLFIEMLQEGVAPNEITYVSVLNACD----LDAGRK 228

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           VH  + + G D   FV ++LI MY +CG LE+A  VFDG+  RN++ WNSMI GY     
Sbjct: 229 VHRLIEQSGLDSDAFVGNALIKMYRRCGSLEDASLVFDGIADRNLLVWNSMIAGYASLNE 288

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG--KQAHAVAVINGMELDNVLG 321
            +  +  F +M L+G +  + ++ ++L A A    L     +  H +AV +G++ D ++G
Sbjct: 289 AQGTLEFFRKMLLDGWKGDKHTLLTVLDACAKSSTLQASSLQTIHDLAVESGLDSDTLVG 348

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDI-------------------------------- 349
           ++++   S+ G  + A++VF  +  +D+                                
Sbjct: 349 TALVKIKSEQGDRKSAKMVFDSLRAKDLAAWNCMFSAYAKHGRLRDAMELQEQMKLDQVR 408

Query: 350 ---VTWNLLIASYVQSGQS--------------------DVVVASSIVDMYAKCERIDNA 386
              VT+  ++++   +G S                    D V+ +++V MYA C R+D+A
Sbjct: 409 PDKVTFVSILSACTATGSSLGLETGKKTHEEILEQGYRLDAVLGTALVRMYAACGRLDDA 468

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
           K VF  +  RD++ W T+L AY       EAS  F ++QLEG +P+ ++  +  LG   N
Sbjct: 469 KLVFEKMESRDLISWTTMLGAYTQARLLDEASITFRRIQLEGHTPDRVALIAA-LGACTN 527

Query: 447 GQMNEAKDMFLQMQSLGVQ-------------------------------PNLITWTTLI 475
             ++ A+D   +++ LG +                               P++I+W  LI
Sbjct: 528 --LSSARDFHERIRQLGWEKDPLVANALLEVYSACGSLEDANETFDGIGEPSVISWNLLI 585

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           +  T+    + A    + M   G  P + T+   +++   +   R G+ IH  ++   + 
Sbjct: 586 AAHTRLGHPDRAFDLLRAMELQGHNPDSVTLATVINSRASLQLFRKGKIIHDSILEAGME 645

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
           + + + T+LV+ Y KCG+   A+ +F  +  +  +  +N+ ++ YA  G A EAL +   
Sbjct: 646 IDSVVATALVNFYGKCGDFATARSIFQGVGAADNVVTWNSTLAAYAQSGHASEALHVLAE 705

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           + Q+G+ P ++TF ++L+ C HAG+ + G  LF  +  D+ + P  EH+GC+++LL+R G
Sbjct: 706 MVQQGVAPTAVTFVSVLSVCGHAGVADVGCHLFSSLRWDYDMDPIPEHYGCMIDLLARGG 765

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L+EA +++ TMP  PD+    +LLS C  ++  +   +++  LLQ    +   ++A+SN
Sbjct: 766 WLEEARQLLKTMPTTPDSIKWMALLSGCHGASVDKTGVFMAMQLLQQNTQSSSAHIAISN 825

Query: 715 AYA 717
            Y+
Sbjct: 826 LYS 828



 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 183/701 (26%), Positives = 332/701 (47%), Gaps = 117/701 (16%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+++HA+I+ +G    +N ++   +V  Y  C ++D A ++F ++  ++   WA ++   
Sbjct: 27  GKELHAQIVSDG--LDKNLHLANGIVHMYLVCKSVDNARKVFDKMASRDAGLWAPMMAAY 84

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            RVG  ++A   F  M ++GV PD   L  V+ AC   G +  GR VH  +    F+  V
Sbjct: 85  ARVGHLQEATGLFHRMLDEGVVPDRVTLLTVINACSESGSLAEGRRVHRRIQGSDFEWSV 144

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            V ++L+ MY KCG ++EAR+VFD  + R N+V+W +M+  YV+ G  E+A+ +F EM  
Sbjct: 145 DVGTALVRMYAKCGSVDEARRVFDNRLLRKNIVSWTTMVSAYVERGCLEQALTLFIEMLQ 204

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           EGV P  ++  S+L+A      LD G++ H +   +G++ D  +G+++I  Y + G LED
Sbjct: 205 EGVAPNEITYVSVLNAC----DLDAGRKVHRLIEQSGLDSDAFVGNALIKMYRRCGSLED 260

Query: 337 AEVVFSRMVERDIVTWNLLIASY------------------------------------- 359
           A +VF  + +R+++ WN +IA Y                                     
Sbjct: 261 ASLVFDGIADRNLLVWNSMIAGYASLNEAQGTLEFFRKMLLDGWKGDKHTLLTVLDACAK 320

Query: 360 ----------------VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                           V+SG  SD +V +++V + ++     +AK VF+S+  +D+  WN
Sbjct: 321 SSTLQASSLQTIHDLAVESGLDSDTLVGTALVKIKSEQGDRKSAKMVFDSLRAKDLAAWN 380

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV----------------------- 439
            + +AYA  GR  +A  L  QM+L+ + P+ +++ S+                       
Sbjct: 381 CMFSAYAKHGRLRDAMELQEQMKLDQVRPDKVTFVSILSACTATGSSLGLETGKKTHEEI 440

Query: 440 ---------ILG------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
                    +LG      +   G++++AK +F +M+S     +LI+WTT++   TQ    
Sbjct: 441 LEQGYRLDAVLGTALVRMYAACGRLDDAKLVFEKMES----RDLISWTTMLGAYTQARLL 496

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT-S 543
           +EA + F+ +   G  P    +  AL ACT+++S R+    H   IR       P+V  +
Sbjct: 497 DEASITFRRIQLEGHTPDRVALIAALGACTNLSSARD---FHER-IRQLGWEKDPLVANA 552

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+++Y+ CG++  A   FD      +  +N +I+ +   G    A  L + ++ +G +PD
Sbjct: 553 LLEVYSACGSLEDANETFDGIGEPSVISWNLLIAAHTRLGHPDRAFDLLRAMELQGHNPD 612

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV----VNLLSRCGNLDEA 659
           S+T   ++N+ +   L  +G      +  D  ++  ME    V    VN   +CG+   A
Sbjct: 613 SVTLATVINSRASLQLFRKG-----KIIHDSILEAGMEIDSVVATALVNFYGKCGDFATA 667

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
             +   +    +     S L+   +S     A ++   ++Q
Sbjct: 668 RSIFQGVGAADNVVTWNSTLAAYAQSGHASEALHVLAEMVQ 708



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/568 (23%), Positives = 246/568 (43%), Gaps = 108/568 (19%)

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           L   L+AC  L     G+ +H  ++  G D  + +A+ ++ MY  C  ++ ARKVFD M 
Sbjct: 14  LAASLRACHTLP---KGKELHAQIVSDGLDKNLHLANGIVHMYLVCKSVDNARKVFDKMA 70

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
           +R+   W  M+  Y + G  +EA  +F+ M  EGV P RV++ ++++A +   +L EG++
Sbjct: 71  SRDAGLWAPMMAAYARVGHLQEATGLFHRMLDEGVVPDRVTLLTVINACSESGSLAEGRR 130

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF-SRMVERDIVTWNLLIASYVQSG 363
            H     +  E    +G++++  Y+K G +++A  VF +R++ ++IV+W  ++++YV+ G
Sbjct: 131 VHRRIQGSDFEWSVDVGTALVRMYAKCGSVDEARRVFDNRLLRKNIVSWTTMVSAYVERG 190

Query: 364 ------------------------------------------------QSDVVVASSIVD 375
                                                            SD  V ++++ 
Sbjct: 191 CLEQALTLFIEMLQEGVAPNEITYVSVLNACDLDAGRKVHRLIEQSGLDSDAFVGNALIK 250

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-------- 427
           MY +C  +++A  VF+ I  R++++WN+++A YA L  +      F +M L+        
Sbjct: 251 MYRRCGSLEDASLVFDGIADRNLLVWNSMIAGYASLNEAQGTLEFFRKMLLDGWKGDKHT 310

Query: 428 -----------------------------GISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
                                        G+  + +   +++      G    AK +F  
Sbjct: 311 LLTVLDACAKSSTLQASSLQTIHDLAVESGLDSDTLVGTALVKIKSEQGDRKSAKMVFDS 370

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           +++     +L  W  + S   ++    +A+   ++M    ++P   T    LSACT   S
Sbjct: 371 LRA----KDLAAWNCMFSAYAKHGRLRDAMELQEQMKLDQVRPDKVTFVSILSACTATGS 426

Query: 519 ---LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
              L  G+  H  ++     L   + T+LV MYA CG +  AK VF+   S++L  +  M
Sbjct: 427 SLGLETGKKTHEEILEQGYRLDAVLGTALVRMYAACGRLDDAKLVFEKMESRDLISWTTM 486

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           +  Y    L  EA   F+ +Q +G  PD +     L AC++     +        F +  
Sbjct: 487 LGAYTQARLLDEASITFRRIQLEGHTPDRVALIAALGACTNLSSARD--------FHERI 538

Query: 636 VKPSMEHFGCVVNLL----SRCGNLDEA 659
            +   E    V N L    S CG+L++A
Sbjct: 539 RQLGWEKDPLVANALLEVYSACGSLEDA 566



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 146/569 (25%), Positives = 249/569 (43%), Gaps = 114/569 (20%)

Query: 287 TSILSASANLDA---LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
           T++   +A+L A   L +GK+ HA  V +G++ +  L + I++ Y     +++A  VF +
Sbjct: 9   TTVTDLAASLRACHTLPKGKELHAQIVSDGLDKNLHLANGIVHMYLVCKSVDNARKVFDK 68

Query: 344 MVERDIVTWNLLIASYVQSGQ--------------------------------------- 364
           M  RD   W  ++A+Y + G                                        
Sbjct: 69  MASRDAGLWAPMMAAYARVGHLQEATGLFHRMLDEGVVPDRVTLLTVINACSESGSLAEG 128

Query: 365 ---------SD----VVVASSIVDMYAKCERIDNAKQVFNSIILR-DVVLWNTLLAAYAD 410
                    SD    V V +++V MYAKC  +D A++VF++ +LR ++V W T+++AY +
Sbjct: 129 RRVHRRIQGSDFEWSVDVGTALVRMYAKCGSVDEARRVFDNRLLRKNIVSWTTMVSAYVE 188

Query: 411 LGRSGEASRLFYQMQLEGISPNIISW-------------------------------NSV 439
            G   +A  LF +M  EG++PN I++                               N++
Sbjct: 189 RGCLEQALTLFIEMLQEGVAPNEITYVSVLNACDLDAGRKVHRLIEQSGLDSDAFVGNAL 248

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           I  + R G + +A  +F  +       NL+ W ++I+G    +     + FF++ML  G 
Sbjct: 249 IKMYRRCGSLEDASLVFDGI----ADRNLLVWNSMIAGYASLNEAQGTLEFFRKMLLDGW 304

Query: 500 KPSTTTITCALSACTDVASLRNG--RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           K    T+   L AC   ++L+    + IH   +   L   T + T+LV + ++ G+   A
Sbjct: 305 KGDKHTLLTVLDACAKSSTLQASSLQTIHDLAVESGLDSDTLVGTALVKIKSEQGDRKSA 364

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
           K VFD   +K+L  +N M S YA HG   +A+ L + ++   + PD +TF +IL+AC+  
Sbjct: 365 KMVFDSLRAKDLAAWNCMFSAYAKHGRLRDAMELQEQMKLDQVRPDKVTFVSILSACTAT 424

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCV-----VNLLSRCGNLDEALRVILTMPCDPDA 672
           G     L L  G  +  ++         V     V + + CG LD+A  V   M    D 
Sbjct: 425 G---SSLGLETGKKTHEEILEQGYRLDAVLGTALVRMYAACGRLDDAKLVFEKME-SRDL 480

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI- 731
               ++L    ++   + A  I+   +QLE   P + VAL    AA G    +S  RD  
Sbjct: 481 ISWTTMLGAYTQARLLDEAS-ITFRRIQLEGHTP-DRVAL---IAALGACTNLSSARDFH 535

Query: 732 --MKEKGLRKNPGCSWIQIGEELHVFVAC 758
             +++ G  K+P    +     L V+ AC
Sbjct: 536 ERIRQLGWEKDP----LVANALLEVYSAC 560



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 4/164 (2%)

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           I  + T +  +L AC    +L  G+ +H  ++   L     +   +V MY  C ++  A+
Sbjct: 7   ISTTVTDLAASLRACH---TLPKGKELHAQIVSDGLDKNLHLANGIVHMYLVCKSVDNAR 63

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           +VFD   S++  ++  M++ YA  G   EA  LF  +  +G+ PD +T   ++NACS +G
Sbjct: 64  KVFDKMASRDAGLWAPMMAAYARVGHLQEATGLFHRMLDEGVVPDRVTLLTVINACSESG 123

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
            + EG  +          + S++    +V + ++CG++DEA RV
Sbjct: 124 SLAEGRRVH-RRIQGSDFEWSVDVGTALVRMYAKCGSVDEARRV 166


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 203/634 (32%), Positives = 331/634 (52%), Gaps = 81/634 (12%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           ++LK C A   +  G+++H   +K       + ++  I +Y KCG L  ARK F  +   
Sbjct: 13  HLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           NV ++N++I  Y +      A ++F ++     EP  VS  +++SA A     D G+ A 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIP----EPDLVSYNTLISAYA-----DCGETAP 123

Query: 307 AVAVINGM-----ELDNVLGSSIINFY-SKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           A+ + +GM     ++D    S++I      VGL+     V                   V
Sbjct: 124 ALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIGQLHSV------------------AV 165

Query: 361 QSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSII-LRDVVLWNTLLAAYADLGRSGEAS 418
            SG  S V V ++++  Y K   +D+AK+VF  +  +RD V WN+++ AY       +A 
Sbjct: 166 SSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKAL 225

Query: 419 RLFYQMQLEGISPNIISWNSVIL---------------------GFLRN----------- 446
            LF +M   G++ ++ +  SV+                      GF +N           
Sbjct: 226 GLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLY 285

Query: 447 ----GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS-CGNEAILFFQEMLETGIKP 501
               G M++ + +F ++     +P+L+ W T++SG +QN     +A+  F++M   G +P
Sbjct: 286 SKCGGGMSDCRKVFEEI----TEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRP 341

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT---SLVDMYAKCGNIHQAK 558
           +  +  C +SAC++++S   G+ IH   ++ D+  P+  ++   +L+ MY+KCGN+  A+
Sbjct: 342 NDCSFVCVISACSNLSSPSQGKQIHSLALKSDI--PSNRISVDNALIAMYSKCGNLQDAR 399

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           R+FD          N+MI+GYA HG+ +E+L LF+ + ++ I P SITF ++L+AC+H G
Sbjct: 400 RLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTG 459

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
            V EG   F  M     ++P  EH+ C+++LL R G L EA  +I  MP +P +    SL
Sbjct: 460 RVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASL 519

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L  C      ELA   +  +LQLEP N   YV LSN YA++GRW EV+ VR  M+++G++
Sbjct: 520 LGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVK 579

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           K PGCSWI++ + +HVFVA D SHP  +EIY  L
Sbjct: 580 KKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFL 613



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 155/581 (26%), Positives = 257/581 (44%), Gaps = 75/581 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  LL+ C+ +RD+ TG+ +H+  +K+  F   + Y     ++ Y+KC  L  A + F  
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKS--FIPPSTYFSNHFILLYSKCGRLAWARKAFQD 68

Query: 142 LRVKNVFSWAAIIGLNCR-------------------------------VGLSEKALIGF 170
           +   NVFS+ AII    +                                G +  AL  F
Sbjct: 69  ISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLF 128

Query: 171 VEMQEDGVSPDNFVLPNVLKA-CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
             M+E G+  D F L  V+ A C  +G +G    +H   +  GFD  V V ++L+  YGK
Sbjct: 129 SGMREMGLDMDGFTLSAVITACCDDVGLIG---QLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 230 CGDLEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
            GDL++A++VF GM   R+ V+WNSMIV Y Q+    +A+ +F EM   G+     ++ S
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLAS 245

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV-GLLEDAEVVFSRMVER 347
           +L+A   L+ L  G Q H   +  G   ++ +GS +I+ YSK  G + D   VF  + E 
Sbjct: 246 VLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEP 305

Query: 348 DIVTWNLLIASYVQSGQ--SDVVVA-------------SSIVDMYAKCERIDN---AKQV 389
           D+V WN +++ Y Q+ +   D +                S V + + C  + +    KQ+
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQI 365

Query: 390 FNSIILRD-----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
            +  +  D     + + N L+A Y+  G   +A RLF +M       N +S NS+I G+ 
Sbjct: 366 HSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA----EHNTVSLNSMIAGYA 421

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPST 503
           ++G   E+  +F  M    + P  IT+ +++S         E   +F  M E   I+P  
Sbjct: 422 QHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEA 481

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH----QAKR 559
              +C +        L     +   + R      +    SL+      GNI      A +
Sbjct: 482 EHYSCMIDLLGRAGKLSEAENL---IARMPFNPGSIGWASLLGACRTHGNIELAVKAANQ 538

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
           V  + PS   P Y  + + YA  G   E   + K ++ +G+
Sbjct: 539 VLQLEPSNAAP-YVVLSNMYASAGRWEEVATVRKFMRDRGV 578



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 160/332 (48%), Gaps = 7/332 (2%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I +  + ++  +A+ L  EM  R   +       +L       D+  G Q H ++
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266

Query: 106 LKNGDFFARNEYVETKLVVFYAKC-DALDVASRLFCRLRVKNVFSWAAII-GLNCRVGLS 163
           +K G  F +N +V + L+  Y+KC   +    ++F  +   ++  W  ++ G +      
Sbjct: 267 IKTG--FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFL 324

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASS 222
           E AL  F +MQ  G  P++     V+ AC  L     G+ +H   LK       + V ++
Sbjct: 325 EDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNA 384

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI MY KCG+L++AR++FD M   N V+ NSMI GY Q+G+  E++ +F  M    + PT
Sbjct: 385 LIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPT 444

Query: 283 RVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
            ++  S+LSA A+   ++EG    + +     +E +    S +I+   + G L +AE + 
Sbjct: 445 SITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLI 504

Query: 342 SRM-VERDIVTWNLLIASYVQSGQSDVVVASS 372
           +RM      + W  L+ +    G  ++ V ++
Sbjct: 505 ARMPFNPGSIGWASLLGACRTHGNIELAVKAA 536


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 195/698 (27%), Positives = 345/698 (49%), Gaps = 85/698 (12%)

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
           C +G  ++A+     M E  +  ++     +++ C        G  V+ YV        +
Sbjct: 82  CLLGNLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSL 141

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            + ++L+ M+ + G+L +A  VF  M  RN+ +WN ++ GY + GL +EA+ +++ M   
Sbjct: 142 QLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWV 201

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           GV+P   +   +L     +  L  G++ H   +  G E D  + +++I  Y K G +  A
Sbjct: 202 GVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTA 261

Query: 338 EVVFSRMVERDIVTWNLL------------------------------------------ 355
            +VF +M  RD ++WN +                                          
Sbjct: 262 RLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELL 321

Query: 356 --------IASYVQSGQ--SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                   I  YV   +   D  + +S++ MY+    I+ A+ VF+    RD+V W  ++
Sbjct: 322 GDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMI 381

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI--LGFLRNGQM-------------- 449
           + Y +     +A   +  M+ EGI P+ I+   V+     L N  M              
Sbjct: 382 SGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLV 441

Query: 450 ------NEAKDMFLQMQSLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
                 N   DM+ + + +          ++ N+++WT++I GL  N+   EA+ FF+EM
Sbjct: 442 SYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM 501

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
           +   +KP++ T+ C LSAC  + +L  G+ IH + +R  +     +  +++DMY +CG +
Sbjct: 502 IRR-LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRM 560

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A + F  S   E+  +N +++GYA  G    A  LF+ + +  + P+ +TF +IL AC
Sbjct: 561 EYAWKQF-FSVDHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCAC 619

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
           S +G+V EGLE F  M   + + P+++H+ CVV+LL R G L+EA   I  MP  PD  +
Sbjct: 620 SRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAV 679

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
            G+LL++C   +  EL E  +E++ Q +  + G Y+ LSN YA +G+W++V++VR +M++
Sbjct: 680 WGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQ 739

Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
            GL  +PGCSW+++   +H F++ D  HP+ +EI A L
Sbjct: 740 NGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALL 777


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  320 bits (821), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 205/649 (31%), Positives = 319/649 (49%), Gaps = 103/649 (15%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           ++ASSL+ MY +CG LE A  VF  +  +++V W  +I  YV  G +  AI +F+ +  E
Sbjct: 63  YLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQE 122

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G+    +   S+LSA ++ + L  G+  H  AV  G+ L  ++ S++++ Y + G L DA
Sbjct: 123 GIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDA 182

Query: 338 EV--------------------------------VFSRMVE----RDIVTW--------- 352
                                             +F RM++     D+VT+         
Sbjct: 183 NALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSS 242

Query: 353 -NLLIASYVQSGQ---------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
              L AS V+            SDVVVA+++V+ YA+C  ID A++ F ++  R+ V W 
Sbjct: 243 SPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWT 302

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ-MNEAKDMFLQMQS 461
           +++AA+A +G    A   F+ M LEG+ P      S +   L   + ++ A+ +    Q 
Sbjct: 303 SMIAAFAQIGHL-LAVETFHAMLLEGVVPT----RSTLFAALEGCEDLHTARLVEAIAQE 357

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQE---------------------------- 493
           +GV  ++   T L+    +     +AI  F                              
Sbjct: 358 IGVATDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTF 417

Query: 494 -----MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL-----IRHDLCLPTPIVTS 543
                 +E GI P       AL AC  +A+L  GR IH  +     +  D+ L   IV+ 
Sbjct: 418 KLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVS- 476

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
              MY +CG++  A+  FD  P+++   +NAM+S  A HG   +   LF+ + Q+G D +
Sbjct: 477 ---MYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAE 533

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            + F N+L+AC+HAGLV  G E F  M  DH V P+ EH+GC+V+LL R G L +A  ++
Sbjct: 534 RVAFLNLLSACAHAGLVEAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIV 593

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             MP  PDA    +L+  C    +TE   + +E +L+L  ++   YVAL N Y+A+GRW 
Sbjct: 594 QAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRANHTAAYVALCNIYSAAGRWE 653

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           + + VR IM + GLRK PG S I+I  ++H FV  DRSHP++E IYA L
Sbjct: 654 DAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAEL 702


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  320 bits (821), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/559 (32%), Positives = 295/559 (52%), Gaps = 56/559 (10%)

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           V   L+ +Y  CG+   AR +FD +  +NVV +N MI  YV N L ++A+ V+  M  +G
Sbjct: 56  VGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQG 115

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
             P   +   +L AS+  D+L  G Q H   +  G++L         N Y          
Sbjct: 116 FVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDL---------NLY---------- 156

Query: 339 VVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
                                         V + ++ MY KC+ +  A+QV + I  RDV
Sbjct: 157 ------------------------------VGNGLIAMYGKCKSLKEAQQVLDEIPCRDV 186

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN--EAKDMF 456
           V WN++++ YA  GR  +A  L  +M+   + PN  +  S++         N    K+MF
Sbjct: 187 VSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMF 246

Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
           L++     + ++I+W  +I+    NS   EA++ + +M   G++P   +I   L A  D+
Sbjct: 247 LKL----TKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDL 302

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
           ++L  GR +H +  R  L     +  +L+DMYAKCG +  A+ VF+    +++  + ++I
Sbjct: 303 SALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSII 362

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           S Y   G   +A+A+F  ++  G++PDSI F ++L ACSHAGL+++G   +  + ++  +
Sbjct: 363 SAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDG-RYYFNLMAECGI 421

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
            P +EHF CVV+LL R G +DEA   I  MP +PD  + G LLS C   +   +    ++
Sbjct: 422 TPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAAD 481

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
            LL L P++ G YV LSN YA +GRW +V+ +R IM+ KG++K PG S +++ + +H F+
Sbjct: 482 KLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFL 541

Query: 757 ACDRSHPKTEEIYATLALL 775
           A D SHP++++IY  L +L
Sbjct: 542 AGDHSHPQSKKIYEELDVL 560



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 227/455 (49%), Gaps = 37/455 (8%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D+ T +++H ++L N  +   N  V  KL+  YA C    +A  +F  +  KNV  +  +
Sbjct: 33  DINTLKKLHGKVL-NDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVM 91

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I       L + AL+ +  M   G  PD +  P VLKA      +  G  +HG VLK+G 
Sbjct: 92  IRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGL 151

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           D  ++V + LI MYGKC  L+EA++V D +  R+VV+WNSM+  Y QNG   +A+ +  E
Sbjct: 152 DLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCRE 211

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI-----INFY 328
           M    ++P   ++ S+L A  N         +  V  +  M L     S I     I  Y
Sbjct: 212 MEALNLKPNDCTMASLLPAVTN-------TTSDNVLYVKEMFLKLTKKSVISWNVMIAMY 264

Query: 329 SKVGLLEDAEVVFSRM----VERDIVTWNLLIASY-----VQSGQ------------SDV 367
               + ++A V++S+M    VE D+V+   ++ +Y     +  G+             ++
Sbjct: 265 VNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNL 324

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
           ++ ++++DMYAKC  + +A+ VFN +  RDVV W ++++AY   G+  +A  +F +M+  
Sbjct: 325 LLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNS 384

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
           G++P+ I++ SV+      G +++ +  F  M   G+ P L  +  ++  L +    +EA
Sbjct: 385 GLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEA 444

Query: 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522
             F ++M    ++P        LSAC   +++  G
Sbjct: 445 YGFIRQM---PLEPDERVWGPLLSACRVYSNMNIG 476



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 197/430 (45%), Gaps = 34/430 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+   K K ++EA  +L E+ CR+      +     Q   +   +   +++ A  LK  D
Sbjct: 162 IAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPND 221

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
                        V     D +     +F +L  K+V SW  +I +     + ++A++ +
Sbjct: 222 C----TMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLY 277

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M+ +GV PD   + +VL A G L  +  GR VH +  +      + + ++LIDMY KC
Sbjct: 278 SQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKC 337

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G L +AR VF+ M  R+VV+W S+I  Y + G   +A+ VF EM   G+ P  ++  S+L
Sbjct: 338 GCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVL 397

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDI 349
           +A ++   LD+G+    +    G+       + +++   + G +++A     +M +E D 
Sbjct: 398 AACSHAGLLDDGRYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDE 457

Query: 350 VTWN-LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
             W  LL A  V S  +  ++A+  + M        N +     ++L ++         Y
Sbjct: 458 RVWGPLLSACRVYSNMNIGILAADKLLML-------NPEHSGYYVLLSNI---------Y 501

Query: 409 ADLGRSGEASRLFYQMQLEGIS--PNI--ISWNSVILGFL-------RNGQMNEAKDMFL 457
           A  GR  + + +   M+ +GI   P I  +  N  +  FL       ++ ++ E  D+ +
Sbjct: 502 AKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLV 561

Query: 458 -QMQSLGVQP 466
            +M+ LG  P
Sbjct: 562 GKMKELGYMP 571


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  320 bits (821), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 193/649 (29%), Positives = 318/649 (48%), Gaps = 92/649 (14%)

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           + SL+      G ++EA +    +   +    N MI G+   GL   A+  +  M  +G 
Sbjct: 44  SKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGA 103

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P R +   ++   A L  LDEG+ AH + +  G+E D    +S++ FY+K+GL+EDAE 
Sbjct: 104 RPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAER 163

Query: 340 VFSRMVERDIVTWNLLIASYVQSG------------------------------------ 363
           VF  M  RDIVTWN+++  YV +G                                    
Sbjct: 164 VFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEF 223

Query: 364 -----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                            + D+ V +S++DMY KC  +  A+ VF ++ LR VV WN ++ 
Sbjct: 224 SSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIG 283

Query: 407 AYADLGRSGEASRLFYQMQLEGIS-----------------------------------P 431
            YA   R  EA   F QM+ EG+                                    P
Sbjct: 284 GYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLP 343

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           +++   +++  + + G++  ++ +F ++        L++W  +I+         EAI  F
Sbjct: 344 HVVLETALLEMYGKVGKVESSEKIFGKI----ANKTLVSWNNMIAAYMYKEMYTEAITLF 399

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
            E+L   + P   T++  + A   + SLR+ R IH Y+I       T I+ +++ MYA+ 
Sbjct: 400 LELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARS 459

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G++  ++ +FD   SK++  +N MI GYA+HG    AL +F  ++  G+ P+  TF ++L
Sbjct: 460 GDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVL 519

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
            ACS +GLV+EG   F  M  ++ + P +EH+GC+ +LL R G+L E L+ I +MP DP 
Sbjct: 520 TACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPT 579

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
           + + GSLL+     N+ ++AEY +E + QLE DN G Y+ LS+ YA +GRW +V +VR +
Sbjct: 580 SRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLL 639

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           MKEKGLR+    S +++      F   D SH ++  I+    +L   ++
Sbjct: 640 MKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSDILSRKIK 688



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 216/434 (49%), Gaps = 29/434 (6%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+  H  ++K G     + Y    LV FYAK   ++ A R+F  + V+++ +W  ++   
Sbjct: 126 GRAAHGMVIKLG--LEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGY 183

Query: 158 CRVGLSEKALIGFVEMQED-GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
              GL   AL  F EM +   V  D+  +   L AC        G+ +HGYV++ G +  
Sbjct: 184 VSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQD 243

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           + V +SL+DMY KCG++  AR VF  M  R VV WN MI GY  N   +EA   F +M  
Sbjct: 244 IKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRA 303

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           EG++   V+  ++L+A A  ++   G+  H   V        VL ++++  Y KVG +E 
Sbjct: 304 EGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVES 363

Query: 337 AEVVFSRMVERDIVTWNLLIASYV-----------------QSGQSDVVVASSIVDMYAK 379
           +E +F ++  + +V+WN +IA+Y+                 Q    D    S++V  +  
Sbjct: 364 SEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVL 423

Query: 380 CERIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
              + + +Q+ + II      + ++ N +L  YA  G    +  +F +M    +S ++IS
Sbjct: 424 LGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKM----VSKDVIS 479

Query: 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
           WN++I+G+  +GQ   A +MF +M+  G+QPN  T+ ++++  + +   +E  + F  ML
Sbjct: 480 WNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLML 539

Query: 496 -ETGIKPSTTTITC 508
            E G+ P      C
Sbjct: 540 QEYGMIPQIEHYGC 553



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 126/241 (52%), Gaps = 2/241 (0%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA D   +M+    Q+       LL  C        G+ +H  +++    F  +  +ET 
Sbjct: 293 EAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQ--FLPHVVLETA 350

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  Y K   ++ + ++F ++  K + SW  +I       +  +A+  F+E+    + PD
Sbjct: 351 LLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPD 410

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
            F +  V+ A   LG +   R +H Y++ +G+     + ++++ MY + GD+  +R++FD
Sbjct: 411 YFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFD 470

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M++++V++WN+MI+GY  +G  + A+ +F EM   G++P   +  S+L+A +    +DE
Sbjct: 471 KMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDE 530

Query: 302 G 302
           G
Sbjct: 531 G 531


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 177/535 (33%), Positives = 291/535 (54%), Gaps = 55/535 (10%)

Query: 247 NVVAWNSMIVGY-VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           N+  +N++I G    N  + E + V+ +M  +G+ P   ++  +L A A   A+ EG++ 
Sbjct: 103 NLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEV 162

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           H  A+                   K+GL                               S
Sbjct: 163 HGQAI-------------------KMGL------------------------------AS 173

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           DV V+++++ MYA C+ I +A++VF++   RD+V W T++  Y  +G + E   L Y ++
Sbjct: 174 DVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGL-YIIR 232

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
              ++ ++   N+++  +L+ G  N A+ +F +M       N+++W ++ISGL Q     
Sbjct: 233 NSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPV----KNVVSWNSMISGLAQKGQFK 288

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
           E++  F++M   G+KP   T+   L++C ++  L  G+ +H YL R+ +     I  +LV
Sbjct: 289 ESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALV 348

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           DMYAKCG+I QA  VF     K++  Y AMI G AMHG   +AL LF  + + GI+PD +
Sbjct: 349 DMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEV 408

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           TF  +L ACSH GLV EG + F  M + + ++P +EH+GC+V+LL R G ++EA   I  
Sbjct: 409 TFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRN 468

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MP +PDA ++G+LL  C    + EL E + + + ++EP   G YV +SN Y+++ RW + 
Sbjct: 469 MPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDA 528

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            ++R  MKE+ L K PGCS I++   +H F   D+SHPK +EIY  L  +  H++
Sbjct: 529 LKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLK 583



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 189/434 (43%), Gaps = 99/434 (22%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L+ C   R +  G+++H + +K G   A + YV   L+  YA CD +  A ++F     
Sbjct: 146 VLKACAESRAVREGEEVHGQAIKMG--LASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQ 203

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +++ SW  +I              G+V+M                         GF R  
Sbjct: 204 RDLVSWTTMIQ-------------GYVKM-------------------------GFAREG 225

Query: 205 HG-YVLK---VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
            G Y+++   V  D  VFV ++L+DMY KCGD   ARKVF  M  +NVV+WNSMI G  Q
Sbjct: 226 VGLYIIRNSNVNLD--VFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQ 283

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            G  +E++ +F +M   GV+P  V++ ++L++ ANL  L+ GK  HA    N +  D  +
Sbjct: 284 KGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFI 343

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           G+++++ Y+K G ++ A  VF  M  +D+ ++  +I      GQ                
Sbjct: 344 GNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQ---------------- 387

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
                                             G+A  LF +M   GI P+ +++  V+
Sbjct: 388 ---------------------------------GGKALDLFSEMPKMGIEPDEVTFVGVL 414

Query: 441 LGFLRNGQMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
                 G + E +  F  M ++  ++P L  +  ++  L +    NEA  F + M    I
Sbjct: 415 TACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNM---PI 471

Query: 500 KPSTTTITCALSAC 513
           +P    +   L AC
Sbjct: 472 EPDAFVLGALLGAC 485



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 193/420 (45%), Gaps = 64/420 (15%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALD--VASRLFCRLRVKNVFSWAAII-G 155
           +QIHA I+K          + T+L    A+   +D   A  L  +LR  N+  + AII G
Sbjct: 54  KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAIIRG 113

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
           L      S + L+ + +M   G+ PDN+ +P VLKAC     V  G  VHG  +K+G   
Sbjct: 114 LATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLAS 173

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            V+V+++L+ MY  C  +  ARKVFD    R++V+W +MI GYV+ G   E + ++    
Sbjct: 174 DVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYI--- 230

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
                        I +++ NLD                      +G+++++ Y K G   
Sbjct: 231 -------------IRNSNVNLDVF--------------------VGNALVDMYLKCGDAN 257

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQ-----------------SDVVVASSIVDMYA 378
            A  VF  M  +++V+WN +I+   Q GQ                  D V   ++++  A
Sbjct: 258 FARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCA 317

Query: 379 KCERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
               ++  K V   +    I  D  + N L+  YA  G   +A  +F  M  +    ++ 
Sbjct: 318 NLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRK----DVY 373

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           S+ ++I+G   +GQ  +A D+F +M  +G++P+ +T+  +++  +      E   +F++M
Sbjct: 374 SYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDM 433



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 145/291 (49%), Gaps = 4/291 (1%)

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED 176
           +V   LV  Y KC   + A ++F  + VKNV SW ++I    + G  +++L  F +MQ  
Sbjct: 241 FVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRL 300

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           GV PD+  L  VL +C  LG +  G+ VH Y+ +       F+ ++L+DMY KCG +++A
Sbjct: 301 GVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQA 360

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
             VF  M  ++V ++ +MIVG   +G   +A+ +F EM   G+EP  V+   +L+A +++
Sbjct: 361 CWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHV 420

Query: 297 DALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNL 354
             ++EG++    ++ I  +         +++   + GL+ +AE     M +E D      
Sbjct: 421 GLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGA 480

Query: 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           L+ +    G+  V +  S++    K E   +   V  S I      W   L
Sbjct: 481 LLGACKIHGK--VELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDAL 529


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 203/634 (32%), Positives = 331/634 (52%), Gaps = 81/634 (12%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           ++LK C A   +  G+++H   +K       + ++  I +Y KCG L  ARK F  +   
Sbjct: 13  HLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           NV ++N++I  Y +      A ++F ++     EP  VS  +++SA A     D G+ A 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIP----EPDLVSYNTLISAYA-----DCGETAP 123

Query: 307 AVAVINGM-----ELDNVLGSSIINFY-SKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           A+ + +GM     ++D    S++I      VGL+     V                   V
Sbjct: 124 ALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQLHSV------------------AV 165

Query: 361 QSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSII-LRDVVLWNTLLAAYADLGRSGEAS 418
            SG  S V V ++++  Y K   +D+AK+VF  +  +RD V WN+++ AY       +A 
Sbjct: 166 SSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKAL 225

Query: 419 RLFYQMQLEGISPNIISWNSVIL---------------------GFLRN----------- 446
            LF +M   G++ ++ +  SV+                      GF +N           
Sbjct: 226 GLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLY 285

Query: 447 ----GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS-CGNEAILFFQEMLETGIKP 501
               G M++ + +F ++     +P+L+ W T++SG +QN     +A+  F++M   G +P
Sbjct: 286 SKCGGGMSDCRKVFEEI----TEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRP 341

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT---SLVDMYAKCGNIHQAK 558
           +  +  C +SAC++++S   G+ IH   ++ D+  P+  ++   +L+ MY+KCGN+  A+
Sbjct: 342 NDCSFVCVISACSNLSSPSQGKQIHSLALKSDI--PSNRISVDNALIAMYSKCGNLQDAR 399

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           R+FD          N+MI+GYA HG+ +E+L LF+ + ++ I P SITF ++L+AC+H G
Sbjct: 400 RLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTG 459

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
            V EG   F  M     ++P  EH+ C+++LL R G L EA  +I  MP +P +    SL
Sbjct: 460 RVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASL 519

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L  C      ELA   +  +LQLEP N   YV LSN YA++GRW EV+ VR  M+++G++
Sbjct: 520 LGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVK 579

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           K PGCSWI++ + +HVFVA D SHP  +EIY  L
Sbjct: 580 KKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFL 613



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 155/581 (26%), Positives = 257/581 (44%), Gaps = 75/581 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  LL+ C+ +RD+ TG+ +H+  +K+  F   + Y     ++ Y+KC  L  A + F  
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKS--FIPPSTYFSNHFILLYSKCGRLAWARKAFQD 68

Query: 142 LRVKNVFSWAAIIGLNCR-------------------------------VGLSEKALIGF 170
           +   NVFS+ AII    +                                G +  AL  F
Sbjct: 69  ISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLF 128

Query: 171 VEMQEDGVSPDNFVLPNVLKA-CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
             M+E G+  D F L  V+ A C  +G +G    +H   +  GFD  V V ++L+  YGK
Sbjct: 129 SGMREMGLDMDXFTLSAVITACCDDVGLIG---QLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 230 CGDLEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
            GDL++A++VF GM   R+ V+WNSMIV Y Q+    +A+ +F EM   G+     ++ S
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLAS 245

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV-GLLEDAEVVFSRMVER 347
           +L+A   L+ L  G Q H   +  G   ++ +GS +I+ YSK  G + D   VF  + E 
Sbjct: 246 VLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEP 305

Query: 348 DIVTWNLLIASYVQSGQ--SDVVVA-------------SSIVDMYAKCERIDN---AKQV 389
           D+V WN +++ Y Q+ +   D +                S V + + C  + +    KQ+
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQI 365

Query: 390 FNSIILRD-----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
            +  +  D     + + N L+A Y+  G   +A RLF +M       N +S NS+I G+ 
Sbjct: 366 HSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA----EHNTVSLNSMIAGYA 421

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPST 503
           ++G   E+  +F  M    + P  IT+ +++S         E   +F  M E   I+P  
Sbjct: 422 QHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEA 481

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH----QAKR 559
              +C +        L     +   + R      +    SL+      GNI      A +
Sbjct: 482 EHYSCMIDLLGRAGKLSEAENL---IARMPFNPGSIGWASLLGACRTHGNIELAVKAANQ 538

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
           V  + PS   P Y  + + YA  G   E   + K ++ +G+
Sbjct: 539 VLQLEPSNAAP-YVVLSNMYASAGRWEEVATVRKFMRDRGV 578



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 160/332 (48%), Gaps = 7/332 (2%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I +  + ++  +A+ L  EM  R   +       +L       D+  G Q H ++
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266

Query: 106 LKNGDFFARNEYVETKLVVFYAKC-DALDVASRLFCRLRVKNVFSWAAII-GLNCRVGLS 163
           +K G  F +N +V + L+  Y+KC   +    ++F  +   ++  W  ++ G +      
Sbjct: 267 IKTG--FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFL 324

Query: 164 EKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASS 222
           E AL  F +MQ  G  P++     V+ AC  L     G+ +H   LK       + V ++
Sbjct: 325 EDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNA 384

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           LI MY KCG+L++AR++FD M   N V+ NSMI GY Q+G+  E++ +F  M    + PT
Sbjct: 385 LIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPT 444

Query: 283 RVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
            ++  S+LSA A+   ++EG    + +     +E +    S +I+   + G L +AE + 
Sbjct: 445 SITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLI 504

Query: 342 SRM-VERDIVTWNLLIASYVQSGQSDVVVASS 372
           +RM      + W  L+ +    G  ++ V ++
Sbjct: 505 ARMPFNPGSIGWASLLGACRTHGNIELAVKAA 536


>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
 gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
          Length = 695

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/574 (31%), Positives = 304/574 (52%), Gaps = 52/574 (9%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L  AR++FD M  R+VV WN+++  Y + GL +EA R+F EM           VT   +A
Sbjct: 81  LAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAA 140

Query: 293 SANLDALDEGKQAHAVAVINGMEL-DNVLGSSIINFYSKVGLLEDAEVVFSRMV-----E 346
              + ALD         V + M   D+   S++++ ++K G+L +AE + ++ +     +
Sbjct: 141 GQVVKALD---------VFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMD 191

Query: 347 RDIVTWNLLIASYVQSG---------------------------QSDVVVASSIVDMYAK 379
           + +  +N LI +Y Q+G                           + +VV  +S++  Y K
Sbjct: 192 KAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIK 251

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              + +A+ +FN +  +D+V WNT+++ Y       E+ +LF++M      P+ +SWN +
Sbjct: 252 AGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMP----DPDTVSWNLI 307

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           I GF++ G+   A+  F +M   G     I+W T+ISG  +N     ++  F +MLE G 
Sbjct: 308 IQGFMQKGEAEHARGFFDRMPERGT----ISWNTMISGYEKNGNYISSVKLFSKMLEVGE 363

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
            P   T +  L+AC  +  L  G  IH  L+       T I  +L+ MY++CG ++ A+ 
Sbjct: 364 IPDRHTFSSVLAACASIPMLGLGAQIH-QLVEKSFVPDTAISNALITMYSRCGALNDAEA 422

Query: 560 VF-DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           +F  +   K+L  +NA+I  Y  HG A +AL LFK +++  + P  ITF ++L+AC +AG
Sbjct: 423 IFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAG 482

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           LV+EG  +F  M  ++ +   +EH+  +VNL+ R G LD+AL VI +MP  PD  + G+ 
Sbjct: 483 LVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAF 542

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L  C       LA+  ++ L  + PD+   YV + N +A  G+W   + VR+ M+ +G+ 
Sbjct: 543 LGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIY 602

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           K PG SWI +  ++HVF++ D  HP  +EI++ L
Sbjct: 603 KQPGYSWIDLEGKMHVFISGDTWHPNAQEIFSVL 636



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/477 (25%), Positives = 212/477 (44%), Gaps = 90/477 (18%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT- 287
           + G    AR++FD + AR+VV WNS++ G  +      A   F  M      P R +V+ 
Sbjct: 12  RAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAM------PVRDAVSW 65

Query: 288 ----SILSASANLDALDEGKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEVVFS 342
               +  SAS + D L     A A  + + M + D V  ++++  Y++ GL+++A  +F 
Sbjct: 66  NTLLAAYSASPHPDHL-----AAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFD 120

Query: 343 RMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQV 389
            M +R+  +WN ++  +  +GQ              D    S++V  + K   +  A+++
Sbjct: 121 EMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEEL 180

Query: 390 FNSIIL-----RDVVLWNTLLAAYADLGRSGEASRLF-------YQ---MQLEGISPNII 434
               +      + V  +NTL+ AY   GR  +A RLF       YQ   ++ +G   N++
Sbjct: 181 LTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVV 240

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           SWNS+++ +++ G +  A+ +F +M       +L++W T+ISG TQ S   E+   F EM
Sbjct: 241 SWNSMMICYIKAGDVCSARALFNEMP----DKDLVSWNTMISGYTQASDMKESEKLFWEM 296

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
                 P   T++  L              I G++ +                    G  
Sbjct: 297 ------PDPDTVSWNL-------------IIQGFMQK--------------------GEA 317

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A+  FD  P +    +N MISGY  +G  + ++ LF  + + G  PD  TF+++L AC
Sbjct: 318 EHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAAC 377

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
           +   ++  GL   +    +    P       ++ + SRCG L++A  +   M    D
Sbjct: 378 ASIPML--GLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKD 432



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 195/442 (44%), Gaps = 72/442 (16%)

Query: 51  ISSLSKEKQIREAVDLLTE-MKCRNFQIGPEIYGELL----QGCVY---KR--DMY-TGQ 99
           +S  +K   + EA +LLT+ +   +     + Y  L+    Q   +   KR  DM   GQ
Sbjct: 165 VSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQ 224

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
             H  + + G  F RN      +++ Y K   +  A  LF  +  K++ SW  +I    +
Sbjct: 225 YQHNMLKRKG--FERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQ 282

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
               +++   F EM +    PD                V +   + G++ K         
Sbjct: 283 ASDMKESEKLFWEMPD----PDT---------------VSWNLIIQGFMQK--------- 314

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
                      G+ E AR  FD M  R  ++WN+MI GY +NG    ++++F +M   G 
Sbjct: 315 -----------GEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGE 363

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P R + +S+L+A A++  L  G Q H + V      D  + +++I  YS+ G L DAE 
Sbjct: 364 IPDRHTFSSVLAACASIPMLGLGAQIHQL-VEKSFVPDTAISNALITMYSRCGALNDAEA 422

Query: 340 VFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
           +F +M  ++D+V+WN LI  Y   G+     A+  + ++ +  R         + ++   
Sbjct: 423 IFKQMHTKKDLVSWNALIGCYEHHGR-----ATKALQLFKEMRR---------AKVMPTH 468

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFL 457
           + + +LL+A  + G   E   +F  M  E GI   I  + +++    R+GQ+++A ++  
Sbjct: 469 ITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEV-- 526

Query: 458 QMQSLGVQPNLITWTTLISGLT 479
            + S+ + P+   W   +   T
Sbjct: 527 -INSMPMAPDRSVWGAFLGACT 547



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 179/433 (41%), Gaps = 74/433 (17%)

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN------F 183
           D L  A RLF  +  ++V +W  ++G   R GL ++A   F EM +   +  N      F
Sbjct: 79  DHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFF 138

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGF----------------------DGCVFVAS 221
               V+KA      +    +     +  GF                      D  V   +
Sbjct: 139 AAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYN 198

Query: 222 SLIDMYGKCGDLEEARKVFDGM--------------IARNVVAWNSMIVGYVQNGLNEEA 267
           +LI  YG+ G   +A+++FD +                RNVV+WNSM++ Y++ G    A
Sbjct: 199 TLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSA 258

Query: 268 IRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327
             +F EM  + +    VS  +++S       + E ++          + D V  + II  
Sbjct: 259 RALFNEMPDKDL----VSWNTMISGYTQASDMKESEK----LFWEMPDPDTVSWNLIIQG 310

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ--------SDVVVASSIVDMY-- 377
           + + G  E A   F RM ER  ++WN +I+ Y ++G         S ++    I D +  
Sbjct: 311 FMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTF 370

Query: 378 ----AKCERID------NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
               A C  I          Q+     + D  + N L+  Y+  G   +A  +F QM  +
Sbjct: 371 SSVLAACASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTK 430

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
               +++SWN++I  +  +G+  +A  +F +M+   V P  IT+ +L+S        +E 
Sbjct: 431 ---KDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEG 487

Query: 488 ILFFQEML-ETGI 499
            + F  M+ E GI
Sbjct: 488 RMVFDTMVHEYGI 500



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 167/337 (49%), Gaps = 35/337 (10%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+  H  + + GF+  V   +S++  Y K GD+  AR +F+ M  +++V+WN+MI GY Q
Sbjct: 223 GQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQ 282

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM-ELDNV 319
               +E+ ++F+EM     +P  VS   I+        + +G+  HA    + M E   +
Sbjct: 283 ASDMKESEKLFWEMP----DPDTVSWNLIIQG-----FMQKGEAEHARGFFDRMPERGTI 333

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVE----RDIVTWNLLIASYV--------------- 360
             +++I+ Y K G    +  +FS+M+E     D  T++ ++A+                 
Sbjct: 334 SWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLV 393

Query: 361 -QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI-ILRDVVLWNTLLAAYADLGRSGEAS 418
            +S   D  ++++++ MY++C  +++A+ +F  +   +D+V WN L+  Y   GR+ +A 
Sbjct: 394 EKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKAL 453

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISG 477
           +LF +M+   + P  I++ S++   +  G ++E + +F  M    G+   +  +  L++ 
Sbjct: 454 QLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNL 513

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           + ++   ++A+     M    + P  +     L ACT
Sbjct: 514 IGRHGQLDDALEVINSM---PMAPDRSVWGAFLGACT 547



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 14/217 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIG--PE--IYGELLQGCVYKRDMYTGQQI 101
           S+   IS   K      +V L ++M     ++G  P+   +  +L  C     +  G QI
Sbjct: 334 SWNTMISGYEKNGNYISSVKLFSKM----LEVGEIPDRHTFSSVLAACASIPMLGLGAQI 389

Query: 102 HARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK-NVFSWAAIIGLNCRV 160
           H  + K+   F  +  +   L+  Y++C AL+ A  +F ++  K ++ SW A+IG     
Sbjct: 390 HQLVEKS---FVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHH 446

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHG-YVLKVGFDGCVFV 219
           G + KAL  F EM+   V P +    ++L AC   G V  GR V    V + G    +  
Sbjct: 447 GRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEH 506

Query: 220 ASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
            ++L+++ G+ G L++A +V + M +A +   W + +
Sbjct: 507 YAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFL 543



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 111/266 (41%), Gaps = 48/266 (18%)

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
           N  LAA    GR G A RLF  +     + ++++WNS++ G  R      A++ F  M  
Sbjct: 4   NRSLAALLRAGRYGAARRLFDALP----ARSVVTWNSLLAGLARRPDARAAREFFDAMPV 59

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
                + ++W TL++                                A SA      L  
Sbjct: 60  R----DAVSWNTLLA--------------------------------AYSASPHPDHLAA 83

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
            R +   + + D+        +L+  YA+ G + +A+R+FD  P +    +N M++G+  
Sbjct: 84  ARRLFDEMPQRDVV----TWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFA 139

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
            G  V+AL +F  +  K    DS + + +++  +  G+++E  EL     S   +  +++
Sbjct: 140 AGQVVKALDVFDAMPAK----DSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVD 195

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMP 667
            +  ++    + G   +A R+   +P
Sbjct: 196 AYNTLIVAYGQAGRFSDAKRLFDMIP 221


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 197/687 (28%), Positives = 336/687 (48%), Gaps = 100/687 (14%)

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM--IA 245
           +LKAC   G +  G+ +H  ++  G      + +SLI +Y KCGD E A  +F  M    
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEM---TLEGVEPTRVSVTSILSASANLDALDEG 302
           R++V+W+++I  +  N +   A+  F  M   +   + P     T++L + +N      G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 303 KQAHAVAVINGMELDNV-LGSSIINFYSKVGL-LEDAEVVFSRMVERDIVTWNLLIASYV 360
               A  +  G    +V +G ++I+ ++K GL ++ A +VF +M  +++VTW L+I  Y 
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYS 224

Query: 361 QSG----------------------------------------------------QSDVV 368
           Q G                                                     SDV 
Sbjct: 225 QLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVF 284

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           V  ++VDMYAK   ++N++++FN+++  +V+ W  L++ Y    +  EA +LF  M    
Sbjct: 285 VGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGH 344

Query: 429 ISPNIISWNSVI---------------------LG--------------FLRNGQMNEAK 453
           ++PN  +++SV+                     LG              + R+G M  A+
Sbjct: 345 VTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECAR 404

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
             F    ++  + NLI++ T      +    +E+  F  E+  TG+  S  T  C LS  
Sbjct: 405 KAF----NILFEKNLISYNTAADANAKALDSDES--FNHEVEHTGVGASPFTYACLLSGA 458

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
             + ++  G  IH  +++        I  +L+ MY+KCGN   A +VF+    + +  + 
Sbjct: 459 ACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWT 518

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           ++ISG+A HG A +AL LF  + + G+ P+ +T+  +L+ACSH GL++E  + F  M  +
Sbjct: 519 SIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYN 578

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           H + P MEH+ C+V+LL R G L EA+  I +MP D DA +  + L +C     T+L E+
Sbjct: 579 HSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEH 638

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            ++ +L+ EP +P  Y+ LSN YA+ GRW++V+ +R  MK+K L K  G SWI++  ++H
Sbjct: 639 AAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVH 698

Query: 754 VFVACDRSHPKTEEIYATLALLGMHVR 780
            F   D SHP+  +IY  L  L + ++
Sbjct: 699 KFHVGDTSHPQARKIYDELDELALKIK 725



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 211/426 (49%), Gaps = 22/426 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+  S+   + +AVDL   +    +         LL  CV       G+Q+H+ ++++G 
Sbjct: 220 ITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSG- 278

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
             A + +V   LV  YAK  A++ + ++F  +   NV SW A+I    +    ++A+  F
Sbjct: 279 -LASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLF 337

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M    V+P+ F   +VLKAC +L   G G+ +HG  +K+G      V +SLI+MY + 
Sbjct: 338 CNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARS 397

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E ARK F+ +  +N++++N+      +   ++E+    +E+   GV  +  +   +L
Sbjct: 398 GTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGVGASPFTYACLL 455

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
           S +A +  + +G+Q HA+ V +G   +  + +++I+ YSK G  E A  VF+ M  R+++
Sbjct: 456 SGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVI 515

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           TW  +I+ + + G      A+  ++++ +   I          +  + V +  +L+A + 
Sbjct: 516 TWTSIISGFAKHG-----FATKALELFYEMLEIG---------VKPNEVTYIAVLSACSH 561

Query: 411 LGRSGEASRLFYQMQL-EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
           +G   EA + F  M     ISP +  +  ++    R+G + EA +    + S+    + +
Sbjct: 562 VGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEF---INSMPFDADAL 618

Query: 470 TWTTLI 475
            W T +
Sbjct: 619 VWRTFL 624


>gi|224054634|ref|XP_002298341.1| predicted protein [Populus trichocarpa]
 gi|222845599|gb|EEE83146.1| predicted protein [Populus trichocarpa]
          Length = 429

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 163/385 (42%), Positives = 243/385 (63%), Gaps = 1/385 (0%)

Query: 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
           +SDV V SS++DMY+KC  ++ A++VF+ ++ +D+V  N +L+ Y   G + E   L  +
Sbjct: 42  ESDVYVISSLIDMYSKCGEVEKARRVFDRMVEKDLVALNAMLSGYGQHGFAKEGFALMDK 101

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           M+  GI PN+I+WNS+I GF + G       MF  M S GV+P++I+WT++ISGL QN  
Sbjct: 102 MEKLGIKPNVITWNSLISGFAQKGDDAMVSKMFELMISNGVEPDVISWTSVISGLVQNFR 161

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
              A   F++ML  G  P++ TI+  L+AC  +A++R GR IHGY +   +     + ++
Sbjct: 162 NEAAFDAFKQMLGRGFLPTSATISTVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSA 221

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ-KGIDP 602
           LVDMYAKCG I +A  +F + P +    +N+MI GYA HG   EA+ LF  +++ +G   
Sbjct: 222 LVDMYAKCGFISEASVLFYMMPERNTVTWNSMIFGYANHGYCDEAIELFDQMEKSEGNKL 281

Query: 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
           D +TFT +L ACSHAG+V  G  LF+ M   +++ P +EH+ C+V+LL R GNL+EA  +
Sbjct: 282 DHLTFTAVLTACSHAGMVEHGQSLFLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDM 341

Query: 663 ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722
           I  MP  PD  + G+LL  C    +  LAE  + HL +LEP+N GN + +SN YA +G W
Sbjct: 342 IKKMPVKPDLFVWGALLGACRNHGDIGLAEVAARHLAELEPENAGNNMLMSNLYADAGSW 401

Query: 723 NEVSQVRDIMKEKGLRKNPGCSWIQ 747
             VS+ + +MK K L+  PGCSWI+
Sbjct: 402 ENVSRSKKMMKRKRLKNFPGCSWIE 426



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 169/374 (45%), Gaps = 87/374 (23%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           MQ+ G+  + FV+P+VLK CG +  V  GR +H  +LK   +  V+V SSLIDMY KCG+
Sbjct: 1   MQKQGLGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGE 60

Query: 233 LEEARKVFDGMIAR-----------------------------------NVVAWNSMIVG 257
           +E+AR+VFD M+ +                                   NV+ WNS+I G
Sbjct: 61  VEKARRVFDRMVEKDLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISG 120

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA-------SANLDALDE--------- 301
           + Q G +    ++F  M   GVEP  +S TS++S         A  DA  +         
Sbjct: 121 FAQKGDDAMVSKMFELMISNGVEPDVISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLPT 180

Query: 302 -------------------GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
                              G++ H  AV+  +E D  + S++++ Y+K G + +A V+F 
Sbjct: 181 SATISTVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSALVDMYAKCGFISEASVLFY 240

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            M ER+ VTWN +I  Y   G  D       ++++ + E+ +  K         D + + 
Sbjct: 241 MMPERNTVTWNSMIFGYANHGYCD-----EAIELFDQMEKSEGNK--------LDHLTFT 287

Query: 403 TLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
            +L A +  G       LF  MQ +  I P +  +  ++    R G +NEA DM  +M  
Sbjct: 288 AVLTACSHAGMVEHGQSLFLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDMIKKMP- 346

Query: 462 LGVQPNLITWTTLI 475
             V+P+L  W  L+
Sbjct: 347 --VKPDLFVWGALL 358



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 128/266 (48%), Gaps = 13/266 (4%)

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           +V SW ++I    +   +E A   F +M   G  P +  +  VL AC  +  V  GR +H
Sbjct: 145 DVISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLPTSATISTVLAACATMANVRRGREIH 204

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
           GY + +  +  ++V S+L+DMY KCG + EA  +F  M  RN V WNSMI GY  +G  +
Sbjct: 205 GYAVVIRVEDDIYVRSALVDMYAKCGFISEASVLFYMMPERNTVTWNSMIFGYANHGYCD 264

Query: 266 EAIRVFYEM-TLEGVEPTRVSVTSILSASANLDALDEGKQ-----AHAVAVINGMELDNV 319
           EAI +F +M   EG +   ++ T++L+A ++   ++ G+           ++  +E    
Sbjct: 265 EAIELFDQMEKSEGNKLDHLTFTAVLTACSHAGMVEHGQSLFLLMQQKYKIVPRLEHY-- 322

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
             + +++   + G L +A  +  +M V+ D+  W  L+ +    G  D+ +A       A
Sbjct: 323 --ACMVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALLGACRNHG--DIGLAEVAARHLA 378

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTL 404
           + E  +    +  S +  D   W  +
Sbjct: 379 ELEPENAGNNMLMSNLYADAGSWENV 404



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 17/252 (6%)

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M + G+  +   I   L  C  V  ++ GR +H  ++++ +     +++SL+DMY+KCG 
Sbjct: 1   MQKQGLGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGE 60

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           + +A+RVFD    K+L   NAM+SGY  HG A E  AL   +++ GI P+ IT+ ++++ 
Sbjct: 61  VEKARRVFDRMVEKDLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISG 120

Query: 614 CSHAG---LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS---RCGNLDEALRVILTMP 667
            +  G   +V++  EL +     + V+P +  +  V++ L    R     +A + +L   
Sbjct: 121 FAQKGDDAMVSKMFELMI----SNGVEPDVISWTSVISGLVQNFRNEAAFDAFKQMLGRG 176

Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEH--LLQLEPDNPGNYV--ALSNAYAASGRWN 723
             P +  I ++L+ C           I  +  ++++E D    YV  AL + YA  G  +
Sbjct: 177 FLPTSATISTVLAACATMANVRRGREIHGYAVVIRVEDD---IYVRSALVDMYAKCGFIS 233

Query: 724 EVSQVRDIMKEK 735
           E S +  +M E+
Sbjct: 234 EASVLFYMMPER 245



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 26/255 (10%)

Query: 38  NSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYT 97
           N  E    S+   IS L +  +   A D   +M  R F         +L  C    ++  
Sbjct: 140 NGVEPDVISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLPTSATISTVLAACATMANVRR 199

Query: 98  GQQIH--ARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155
           G++IH  A +++  D    + YV + LV  YAKC  +  AS LF  +  +N  +W ++I 
Sbjct: 200 GREIHGYAVVIRVED----DIYVRSALVDMYAKCGFISEASVLFYMMPERNTVTWNSMIF 255

Query: 156 LNCRVGLSEKALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWVGFGRAV-------HGY 207
                G  ++A+  F +M++ +G   D+     VL AC   G V  G+++       +  
Sbjct: 256 GYANHGYCDEAIELFDQMEKSEGNKLDHLTFTAVLTACSHAGMVEHGQSLFLLMQQKYKI 315

Query: 208 VLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQN----G 262
           V ++    C      ++D+ G+ G+L EA  +   M +  ++  W +++ G  +N    G
Sbjct: 316 VPRLEHYAC------MVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALL-GACRNHGDIG 368

Query: 263 LNEEAIRVFYEMTLE 277
           L E A R   E+  E
Sbjct: 369 LAEVAARHLAELEPE 383


>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 908

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/574 (31%), Positives = 304/574 (52%), Gaps = 52/574 (9%)

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L  AR++FD M  R+VV WN+++  Y + GL +EA R+F EM           VT   +A
Sbjct: 117 LAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAA 176

Query: 293 SANLDALDEGKQAHAVAVINGMEL-DNVLGSSIINFYSKVGLLEDAEVVFSRMV-----E 346
              + ALD         V + M   D+   S++++ ++K G+L +AE + ++ +     +
Sbjct: 177 GQVVKALD---------VFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMD 227

Query: 347 RDIVTWNLLIASYVQSG---------------------------QSDVVVASSIVDMYAK 379
           + +  +N LI +Y Q+G                           + +VV  +S++  Y K
Sbjct: 228 KAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIK 287

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
              + +A+ +FN +  +D+V WNT+++ Y       E+ +LF++M      P+ +SWN +
Sbjct: 288 AGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMP----DPDTVSWNLI 343

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           I GF++ G+   A+  F +M   G     I+W T+ISG  +N     ++  F +MLE G 
Sbjct: 344 IQGFMQKGEAEHARGFFDRMPERGT----ISWNTMISGYEKNGNYISSVKLFSKMLEVGE 399

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
            P   T +  L+AC  +  L  G  IH  L+       T I  +L+ MY++CG ++ A+ 
Sbjct: 400 IPDRHTFSSVLAACASIPMLGLGAQIH-QLVEKSFVPDTAISNALITMYSRCGALNDAEA 458

Query: 560 VF-DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           +F  +   K+L  +NA+I  Y  HG A +AL LFK +++  + P  ITF ++L+AC +AG
Sbjct: 459 IFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAG 518

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           LV+EG  +F  M  ++ +   +EH+  +VNL+ R G LD+AL VI +MP  PD  + G+ 
Sbjct: 519 LVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAF 578

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L  C       LA+  ++ L  + PD+   YV + N +A  G+W   + VR+ M+ +G+ 
Sbjct: 579 LGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIY 638

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           K PG SWI +  ++HVF++ D  HP  +EI++ L
Sbjct: 639 KQPGYSWIDLEGKMHVFISGDTWHPNAQEIFSVL 672



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/477 (25%), Positives = 212/477 (44%), Gaps = 90/477 (18%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT- 287
           + G    AR++FD + AR+VV WNS++ G  +      A   F  M      P R +V+ 
Sbjct: 48  RAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAM------PVRDAVSW 101

Query: 288 ----SILSASANLDALDEGKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEVVFS 342
               +  SAS + D L     A A  + + M + D V  ++++  Y++ GL+++A  +F 
Sbjct: 102 NTLLAAYSASPHPDHL-----AAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFD 156

Query: 343 RMVERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCERIDNAKQV 389
            M +R+  +WN ++  +  +GQ              D    S++V  + K   +  A+++
Sbjct: 157 EMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEEL 216

Query: 390 FNSIIL-----RDVVLWNTLLAAYADLGRSGEASRLF-------YQ---MQLEGISPNII 434
               +      + V  +NTL+ AY   GR  +A RLF       YQ   ++ +G   N++
Sbjct: 217 LTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVV 276

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
           SWNS+++ +++ G +  A+ +F +M       +L++W T+ISG TQ S   E+   F EM
Sbjct: 277 SWNSMMICYIKAGDVCSARALFNEMPD----KDLVSWNTMISGYTQASDMKESEKLFWEM 332

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
                 P   T++  L              I G++ +                    G  
Sbjct: 333 ------PDPDTVSWNL-------------IIQGFMQK--------------------GEA 353

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A+  FD  P +    +N MISGY  +G  + ++ LF  + + G  PD  TF+++L AC
Sbjct: 354 EHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAAC 413

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
           +   ++  GL   +    +    P       ++ + SRCG L++A  +   M    D
Sbjct: 414 ASIPML--GLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKD 468



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 195/442 (44%), Gaps = 72/442 (16%)

Query: 51  ISSLSKEKQIREAVDLLTE-MKCRNFQIGPEIYGELL----QGCVY---KR--DMY-TGQ 99
           +S  +K   + EA +LLT+ +   +     + Y  L+    Q   +   KR  DM   GQ
Sbjct: 201 VSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQ 260

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCR 159
             H  + + G  F RN      +++ Y K   +  A  LF  +  K++ SW  +I    +
Sbjct: 261 YQHNMLKRKG--FERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQ 318

Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
               +++   F EM +    PD                V +   + G++ K         
Sbjct: 319 ASDMKESEKLFWEMPD----PDT---------------VSWNLIIQGFMQK--------- 350

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
                      G+ E AR  FD M  R  ++WN+MI GY +NG    ++++F +M   G 
Sbjct: 351 -----------GEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGE 399

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P R + +S+L+A A++  L  G Q H + V      D  + +++I  YS+ G L DAE 
Sbjct: 400 IPDRHTFSSVLAACASIPMLGLGAQIHQL-VEKSFVPDTAISNALITMYSRCGALNDAEA 458

Query: 340 VFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398
           +F +M  ++D+V+WN LI  Y   G+     A+  + ++ +  R         + ++   
Sbjct: 459 IFKQMHTKKDLVSWNALIGCYEHHGR-----ATKALQLFKEMRR---------AKVMPTH 504

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFL 457
           + + +LL+A  + G   E   +F  M  E GI   I  + +++    R+GQ+++A ++  
Sbjct: 505 ITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEV-- 562

Query: 458 QMQSLGVQPNLITWTTLISGLT 479
            + S+ + P+   W   +   T
Sbjct: 563 -INSMPMAPDRSVWGAFLGACT 583



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 179/433 (41%), Gaps = 74/433 (17%)

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN------F 183
           D L  A RLF  +  ++V +W  ++G   R GL ++A   F EM +   +  N      F
Sbjct: 115 DHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFF 174

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGF----------------------DGCVFVAS 221
               V+KA      +    +     +  GF                      D  V   +
Sbjct: 175 AAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYN 234

Query: 222 SLIDMYGKCGDLEEARKVFDGM--------------IARNVVAWNSMIVGYVQNGLNEEA 267
           +LI  YG+ G   +A+++FD +                RNVV+WNSM++ Y++ G    A
Sbjct: 235 TLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSA 294

Query: 268 IRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327
             +F EM  + +    VS  +++S       + E ++          + D V  + II  
Sbjct: 295 RALFNEMPDKDL----VSWNTMISGYTQASDMKESEK----LFWEMPDPDTVSWNLIIQG 346

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ--------SDVVVASSIVDMY-- 377
           + + G  E A   F RM ER  ++WN +I+ Y ++G         S ++    I D +  
Sbjct: 347 FMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTF 406

Query: 378 ----AKCERID------NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
               A C  I          Q+     + D  + N L+  Y+  G   +A  +F QM  +
Sbjct: 407 SSVLAACASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTK 466

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEA 487
               +++SWN++I  +  +G+  +A  +F +M+   V P  IT+ +L+S        +E 
Sbjct: 467 K---DLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEG 523

Query: 488 ILFFQEML-ETGI 499
            + F  M+ E GI
Sbjct: 524 RMVFDTMVHEYGI 536



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 167/337 (49%), Gaps = 35/337 (10%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+  H  + + GF+  V   +S++  Y K GD+  AR +F+ M  +++V+WN+MI GY Q
Sbjct: 259 GQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQ 318

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM-ELDNV 319
               +E+ ++F+EM     +P  VS   I+        + +G+  HA    + M E   +
Sbjct: 319 ASDMKESEKLFWEMP----DPDTVSWNLIIQG-----FMQKGEAEHARGFFDRMPERGTI 369

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVE----RDIVTWNLLIASYV--------------- 360
             +++I+ Y K G    +  +FS+M+E     D  T++ ++A+                 
Sbjct: 370 SWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLV 429

Query: 361 -QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI-ILRDVVLWNTLLAAYADLGRSGEAS 418
            +S   D  ++++++ MY++C  +++A+ +F  +   +D+V WN L+  Y   GR+ +A 
Sbjct: 430 EKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKAL 489

Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISG 477
           +LF +M+   + P  I++ S++   +  G ++E + +F  M    G+   +  +  L++ 
Sbjct: 490 QLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNL 549

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           + ++   ++A+     M    + P  +     L ACT
Sbjct: 550 IGRHGQLDDALEVINSM---PMAPDRSVWGAFLGACT 583



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 14/217 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIG--PE--IYGELLQGCVYKRDMYTGQQI 101
           S+   IS   K      +V L ++M     ++G  P+   +  +L  C     +  G QI
Sbjct: 370 SWNTMISGYEKNGNYISSVKLFSKM----LEVGEIPDRHTFSSVLAACASIPMLGLGAQI 425

Query: 102 HARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK-NVFSWAAIIGLNCRV 160
           H  + K+   F  +  +   L+  Y++C AL+ A  +F ++  K ++ SW A+IG     
Sbjct: 426 HQLVEKS---FVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHH 482

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHG-YVLKVGFDGCVFV 219
           G + KAL  F EM+   V P +    ++L AC   G V  GR V    V + G    +  
Sbjct: 483 GRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEH 542

Query: 220 ASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMI 255
            ++L+++ G+ G L++A +V + M +A +   W + +
Sbjct: 543 YAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFL 579



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 114/266 (42%), Gaps = 48/266 (18%)

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
           N  LAA    GR G A RLF  +     + ++++WNS++ G  R      A++ F    +
Sbjct: 40  NRSLAALLRAGRYGAARRLFDALP----ARSVVTWNSLLAGLARRPDARAAREFF---DA 92

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
           + V+ + ++W TL++                                A SA      L  
Sbjct: 93  MPVR-DAVSWNTLLA--------------------------------AYSASPHPDHLAA 119

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
            R +   + + D+        +L+  YA+ G + +A+R+FD  P +    +N M++G+  
Sbjct: 120 ARRLFDEMPQRDVV----TWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFA 175

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
            G  V+AL +F  +  K    DS + + +++  +  G+++E  EL     S   +  +++
Sbjct: 176 AGQVVKALDVFDAMPAK----DSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVD 231

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMP 667
            +  ++    + G   +A R+   +P
Sbjct: 232 AYNTLIVAYGQAGRFSDAKRLFDMIP 257


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  320 bits (819), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 196/627 (31%), Positives = 310/627 (49%), Gaps = 92/627 (14%)

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           L ++L+ C   G    G  VH Y+LK G    +  ++ LIDMY KC +   A KVFD M 
Sbjct: 9   LVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMP 68

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            RNVV+W++++ G+V NG  + ++ +F EM  +G+ P   + ++ L A   L+AL++G Q
Sbjct: 69  ERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQ 128

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            H                    F  K+G        F  MVE                  
Sbjct: 129 IHG-------------------FCLKIG--------FEMMVE------------------ 143

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
               V +S+VDMY+KC RI+ A++VF  I+ R ++ WN ++A +   G   +A   F  M
Sbjct: 144 ----VGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMM 199

Query: 425 QLEGI-----------------SPNIISWNSVILGFL----------------------R 445
           Q   I                 S  +I     I GFL                      +
Sbjct: 200 QEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVK 259

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
            G +  A+  F Q++    +  +I+W++LI G  Q     EA+  F+ + E   +  +  
Sbjct: 260 CGYLFSARKAFDQIK----EKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFA 315

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           ++  +    D A LR G+ +    ++    L T ++ S+VDMY KCG + +A++ F    
Sbjct: 316 LSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQ 375

Query: 566 SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            K++  +  +I+GY  HGL  +++ +F  + +  I+PD + +  +L+ACSH+G++ EG E
Sbjct: 376 LKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEE 435

Query: 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
           LF  +   H +KP +EH+ CVV+LL R G L EA  +I TMP  P+  I  +LLS C   
Sbjct: 436 LFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVH 495

Query: 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
            + EL + + + LL+++  NP NYV +SN Y  +G WNE    R++   KGL+K  G SW
Sbjct: 496 GDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSW 555

Query: 746 IQIGEELHVFVACDRSHPKTEEIYATL 772
           ++I  E+H F + + SHP T  I  TL
Sbjct: 556 VEIEREVHFFRSGEDSHPLTPVIQETL 582



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 141/525 (26%), Positives = 246/525 (46%), Gaps = 63/525 (12%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L+ C  K     G Q+H  +LK+G     N      L+  Y KC    +A ++F  +  
Sbjct: 12  ILRVCTRKGLSDQGGQVHCYLLKSGS--GLNLITSNYLIDMYCKCREPLMAYKVFDSMPE 69

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +NV SW+A++  +   G  + +L  F EM   G+ P+ F     LKACG L  +  G  +
Sbjct: 70  RNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQI 129

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HG+ LK+GF+  V V +SL+DMY KCG + EA KVF  ++ R++++WN+MI G+V  G  
Sbjct: 130 HGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYG 189

Query: 265 EEAIRVFYEMTLEGVE--PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN--VL 320
            +A+  F  M    ++  P   ++TS+L A ++   +  GKQ H   V +G    +   +
Sbjct: 190 SKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATI 249

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ---------------- 364
             S+++ Y K G L  A   F ++ E+ +++W+ LI  Y Q G+                
Sbjct: 250 TGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNS 309

Query: 365 -------SDVV-----------------------------VASSIVDMYAKCERIDNAKQ 388
                  S ++                             V +S+VDMY KC  +D A++
Sbjct: 310 QIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEK 369

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
            F  + L+DV+ W  ++  Y   G   ++ R+FY+M    I P+ + + +V+     +G 
Sbjct: 370 CFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGM 429

Query: 449 MNEAKDMFLQ-MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
           + E +++F + +++ G++P +  +  ++  L +     EA      M    IKP+     
Sbjct: 430 IKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTM---PIKPNVGIWQ 486

Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
             LS C     +  G+ +   L+R D   P   V  + ++Y + G
Sbjct: 487 TLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVM-MSNLYGQAG 530



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 215/494 (43%), Gaps = 67/494 (13%)

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
           R ++ SIL         D+G Q H   + +G  L+ +  + +I+ Y K      A  VF 
Sbjct: 6   RQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFD 65

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN-SIILRDVVLW 401
            M ER++V+W+ L++ +V +G          + ++++  R       F  S  L+   L 
Sbjct: 66  SMPERNVVSWSALMSGHVLNGD-----LKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLL 120

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
           N L      L   G   ++ ++M +E         NS++  + + G++NEA+ +F ++  
Sbjct: 121 NALEKG---LQIHGFCLKIGFEMMVE-------VGNSLVDMYSKCGRINEAEKVFRRI-- 168

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK--PSTTTITCALSACTDVASL 519
             V  +LI+W  +I+G      G++A+  F  M E  IK  P   T+T  L AC+    +
Sbjct: 169 --VDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMI 226

Query: 520 RNGRAIHGYLIRHDLCLPTP--IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
             G+ IHG+L+R     P+   I  SLVD+Y KCG +  A++ FD    K +  ++++I 
Sbjct: 227 YAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLIL 286

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE---LFVGMFSDH 634
           GYA  G  VEA+ LFK LQ+     DS   ++I+   +   L+ +G +   L V + S  
Sbjct: 287 GYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGL 346

Query: 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP--------------------------- 667
           +          VV++  +CG +DEA +    M                            
Sbjct: 347 ETSV----LNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIF 402

Query: 668 -------CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG--NYVALSNAYAA 718
                   +PD     ++LS C  S   +  E +   LL+     P   +Y  + +    
Sbjct: 403 YEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGR 462

Query: 719 SGRWNEVSQVRDIM 732
           +GR  E   + D M
Sbjct: 463 AGRLKEAKHLIDTM 476



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 172/345 (49%), Gaps = 6/345 (1%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           +A+D    M+  N +  P+ +    LL+ C     +Y G+QIH  ++++G     +  + 
Sbjct: 191 KALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATIT 250

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
             LV  Y KC  L  A + F +++ K + SW+++I    + G   +A+  F  +QE    
Sbjct: 251 GSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQ 310

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
            D+F L +++        +  G+ +    +K+       V +S++DMY KCG ++EA K 
Sbjct: 311 IDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKC 370

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F  M  ++V++W  +I GY ++GL ++++R+FYEM    +EP  V   ++LSA ++   +
Sbjct: 371 FAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMI 430

Query: 300 DEGKQAHAVAV-INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIA 357
            EG++  +  +  +G++      + +++   + G L++A+ +   M ++ ++  W  L++
Sbjct: 431 KEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLS 490

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                G  D+ +   +  +  + +  + A  V  S +      WN
Sbjct: 491 LCRVHG--DIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWN 533


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  320 bits (819), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 190/665 (28%), Positives = 326/665 (49%), Gaps = 100/665 (15%)

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           R  L E      V    D  S  +F   + LK    LG++  G+ +H +V+K+G    + 
Sbjct: 55  RASLPETGFTNLV----DSCSTHSFS-SHALKISAKLGFLHGGKQLHAHVIKLGNCNLLS 109

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV----FYEM 274
           + + ++ +Y KC +  +  K+FD M  +NVV+WN++I G V+       +R+    F +M
Sbjct: 110 LQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQM 169

Query: 275 TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
            LE + P  +++  +L AS  L+ +   +Q H   + +G +                   
Sbjct: 170 VLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFD------------------- 210

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
                                         S+  V S++VD YAK   +D A+  F+ + 
Sbjct: 211 ------------------------------SNCFVGSALVDSYAKFGLVDEAQSAFDEVS 240

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LG-- 442
            RD+VLWN +++ YA  G  G+A  +F  M+LEG+  +  ++ S+I          LG  
Sbjct: 241 SRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQ 300

Query: 443 -----------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
                                  + +N  + +A+  F  M    +  N+++WTT+I G  
Sbjct: 301 VHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGM----IVKNIVSWTTMIVGYG 356

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           Q+  G EA+   QEM+     P    +   LS+C ++++      +H Y++ +       
Sbjct: 357 QHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLS 416

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           I  +LV  Y+KCG+I  A + F      ++  + +++  YA HGL+ E + +F+ +    
Sbjct: 417 IANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSN 476

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           + PD + F  +L+AC+H G V EGL  F  M + +Q+ P  EH+ C+++LL R G LDEA
Sbjct: 477 VRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEA 536

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
           + ++ +MP +P +  +G+ L  C       LA + SE L  +EP+ P NY  +SN YA+ 
Sbjct: 537 INLLTSMPVEPRSDTLGAFLGACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASV 596

Query: 720 GRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           G W +V++VR +M+E+   K PGCSW++I  E+H FV+ D++HP+  ++Y  L LL   V
Sbjct: 597 GHWFDVARVRKLMRERCDFKVPGCSWMEIAGEVHTFVSRDKTHPRAVQVYGMLDLL---V 653

Query: 780 RLVSK 784
           RL+ +
Sbjct: 654 RLMEE 658



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 203/383 (53%), Gaps = 20/383 (5%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+  +   D+   +Q+H  ILK+G  F  N +V + LV  YAK   +D A   F  +  
Sbjct: 184 LLRASIELNDVGICRQLHCFILKSG--FDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSS 241

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           +++  W  ++      G+  KA   F  M+ +GV  DNF   +++ +CG LG  G G+ V
Sbjct: 242 RDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQV 301

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HG ++++ FD  V VAS+L+DMY K  ++E+ARK FDGMI +N+V+W +MIVGY Q+G  
Sbjct: 302 HGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDG 361

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           +EA+R+  EM      P  +++ SILS+  NL A  E  Q HA  V NG E    + +++
Sbjct: 362 KEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANAL 421

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID 384
           ++ YSK G +  A   FS + E DI++W  L+ +Y   G S               E ++
Sbjct: 422 VSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSK--------------EGVE 467

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGF 443
             +++  S +  D V +  +L+A A  G   E    F  M  +  I P+   +  +I   
Sbjct: 468 VFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLL 527

Query: 444 LRNGQMNEAKDMFLQMQSLGVQP 466
            R G ++EA ++   + S+ V+P
Sbjct: 528 GRAGFLDEAINL---LTSMPVEP 547



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 229/476 (48%), Gaps = 62/476 (13%)

Query: 95  MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII 154
           ++ G+Q+HA ++K G+       ++ +++  Y KC   +   ++F  + +KNV SW  +I
Sbjct: 89  LHGGKQLHAHVIKLGN--CNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLI 146

Query: 155 -GL---NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK 210
            G+   NC+  L       F +M  + ++P+   L  +L+A   L  VG  R +H ++LK
Sbjct: 147 CGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILK 206

Query: 211 VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270
            GFD   FV S+L+D Y K G ++EA+  FD + +R++V WN M+  Y  NG+  +A  V
Sbjct: 207 SGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGV 266

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK 330
           F  M LEGV+    + TS++++   L +   GKQ H + +    +LD ++ S++++ YSK
Sbjct: 267 FKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSK 326

Query: 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------------------- 364
              +EDA   F  M+ ++IV+W  +I  Y Q G                           
Sbjct: 327 NENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASI 386

Query: 365 ----------SDVV----------------VASSIVDMYAKCERIDNAKQVFNSIILRDV 398
                     S+VV                +A+++V  Y+KC  I +A Q F+S+   D+
Sbjct: 387 LSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDI 446

Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF-L 457
           + W +L+ AYA  G S E   +F +M    + P+ +++  V+      G + E    F L
Sbjct: 447 ISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNL 506

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +    + P+   +T +I  L +    +EAI     M    ++P + T+   L AC
Sbjct: 507 MINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSM---PVEPRSDTLGAFLGAC 559


>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 649

 Score =  320 bits (819), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 210/638 (32%), Positives = 332/638 (52%), Gaps = 72/638 (11%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A  LF  ++ ++  +W ++I    +     +A   F EM    V   N ++      CG+
Sbjct: 57  ARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSGYFSCCGS 116

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
             +V  GR +   + +     CV   +++I  Y K G +++A K+F+ M   N V++N++
Sbjct: 117 R-FVEEGRRLFELMPQ---RDCV-SWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAV 171

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL----------DEGKQ 304
           I G++ NG  E A+  F  M  E    +  ++ S L  +  LD            D+GK 
Sbjct: 172 ITGFLLNGDVESAVGFFRTMP-EHDSTSLCALISGLVRNGELDLAAGILRECGNGDDGKD 230

Query: 305 --AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF-------------SRMVERDI 349
              HA              +++I  Y + G +E+A  +F              R   R++
Sbjct: 231 DLVHAY-------------NTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNV 277

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
           V+WN ++  YV++G  D+V                 A+++F+ ++ RD   WNTL++ Y 
Sbjct: 278 VSWNSMMMCYVKAG--DIVF----------------ARELFDRMVERDNCSWNTLISCYV 319

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469
            +    EAS+LF +M     SP+++SWNS+I G  + G +N AKD F +M       NLI
Sbjct: 320 QISNMEEASKLFREMP----SPDVLSWNSIISGLAQKGDLNLAKDFFERMP----HKNLI 371

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           +W T+I+G  +N     AI  F EM   G +P   T++  +S  T +  L  G+ +H  L
Sbjct: 372 SWNTIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLH-QL 430

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGLAVEA 588
           +   +   +PI  SL+ MY++CG I  A  VF +I   K++  +NAMI GYA HG A EA
Sbjct: 431 VTKTVLPDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEA 490

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L LFK +++  I P  ITF ++LNAC+HAGLV EG   F  M +D+ ++P +EHF  +V+
Sbjct: 491 LELFKLMKRLKIHPTYITFISVLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFASLVD 550

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           +L R G L EA+ +I TMP  PD  + G+LL  C   N  ELA   ++ L++LEP++   
Sbjct: 551 ILGRQGQLQEAMDLINTMPFKPDKAVWGALLGACRVHNNVELALVAADALIRLEPESSAP 610

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
           YV L N YA  G+W++   VR +M+EK ++K  G SW+
Sbjct: 611 YVLLYNMYANLGQWDDAESVRVLMEEKNVKKQAGYSWV 648



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 153/629 (24%), Positives = 251/629 (39%), Gaps = 111/629 (17%)

Query: 15  SHTKPQKPLKLSQTHLT------KLRESDNSYESLYK----SYFHQISSLSKEKQIREAV 64
           +H     PL  S   L+      ++ E+   ++S+ +    ++   IS   + ++I  A 
Sbjct: 30  THNYNSSPLNQSNKKLSNLIRSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARAR 89

Query: 65  DLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVV 124
            L  EM  R+      I       C   R +  G+++   ++   D  + N  +      
Sbjct: 90  QLFDEMPRRDVVSWNLIVSGYFS-CCGSRFVEEGRRLF-ELMPQRDCVSWNTVISG---- 143

Query: 125 FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
            YAK   +D A +LF  +   N  S+ A+I      G  E A+  F  M E   +    +
Sbjct: 144 -YAKNGRMDQALKLFNAMPEHNAVSYNAVITGFLLNGDVESAVGFFRTMPEHDSTSLCAL 202

Query: 185 LPNVLK------ACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           +  +++      A G L   G G          G D  V   ++LI  YG+ G +EEAR+
Sbjct: 203 ISGLVRNGELDLAAGILRECGNG--------DDGKDDLVHAYNTLIAGYGQRGHVEEARR 254

Query: 239 VFDGM-------------IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +FD +               RNVV+WNSM++ YV+ G    A  +F  M    VE    S
Sbjct: 255 LFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRM----VERDNCS 310

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRM 344
             +++S    +  ++E     A  +   M   +VL  +SII+  ++ G L  A+  F RM
Sbjct: 311 WNTLISCYVQISNMEE-----ASKLFREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERM 365

Query: 345 VERDIVTWNLLIASY---------------------------------VQSGQSDVV--- 368
             +++++WN +IA Y                                 V +G  D+    
Sbjct: 366 PHKNLISWNTIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGK 425

Query: 369 ---------------VASSIVDMYAKCERIDNAKQVFNSIIL-RDVVLWNTLLAAYADLG 412
                          + +S++ MY++C  I +A  VFN I L +DV+ WN ++  YA  G
Sbjct: 426 QLHQLVTKTVLPDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHG 485

Query: 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITW 471
            + EA  LF  M+   I P  I++ SV+      G + E    F  M    G++P +  +
Sbjct: 486 SAAEALELFKLMKRLKIHPTYITFISVLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHF 545

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
            +L+  L +     EA+     M     KP        L AC    ++         LIR
Sbjct: 546 ASLVDILGRQGQLQEAMDLINTM---PFKPDKAVWGALLGACRVHNNVELALVAADALIR 602

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            +     P V  L +MYA  G    A+ V
Sbjct: 603 LEPESSAPYVL-LYNMYANLGQWDDAESV 630



 Score = 46.6 bits (109), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 14/142 (9%)

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           + G I +A+ +FD    ++   +N+MISGY        A  LF  + ++ +   ++  + 
Sbjct: 50  RSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSG 109

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSME--HFGCVVNLLSRCGNLDEALRVILTMP 667
             + C  +  V EG  LF       ++ P  +   +  V++  ++ G +D+AL++   MP
Sbjct: 110 YFSCCG-SRFVEEGRRLF-------ELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMP 161

Query: 668 ----CDPDAHIIGSLLSTCVKS 685
                  +A I G LL+  V+S
Sbjct: 162 EHNAVSYNAVITGFLLNGDVES 183


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  320 bits (819), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 174/499 (34%), Positives = 281/499 (56%), Gaps = 25/499 (5%)

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M    V P++ S + IL + A       G+  H   +  G E D +L + +++FY+KVG 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           L+ A+ VF  M  RD+V  N +I++  + G                   ++ A+ +F+++
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGY------------------VEEARNLFDNM 102

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
             R+   WN+++  Y  LG    A  +F    ++    +++SWN++I G+ ++ Q+  A+
Sbjct: 103 TERNSCSWNSMITCYCKLGDINSARLMFDCNPVK----DVVSWNAIIDGYCKSKQLVAAQ 158

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           ++FL M   G   N +TW T+IS   Q      AI  FQ+M    +KP+  T+   LSAC
Sbjct: 159 ELFLLM---GSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSAC 215

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
             + +L  G  IHGY+    L +   +  +L+DMY KCG +  A  VF     K +  +N
Sbjct: 216 AHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWN 275

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           ++I G  M+G   EA+A F  ++++GI PD +TF  IL+ CSH+GL++ G   F  M   
Sbjct: 276 SIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGV 335

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           + ++P +EH+GC+V+LL R G L EAL +I  MP  P++ ++GSLL  C    +T+L E 
Sbjct: 336 YGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQ 395

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
           +++ LL+L+P + GNYV LSN YA+  RW++V+  R +M ++G+ K PGCS I++   +H
Sbjct: 396 VTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVH 455

Query: 754 VFVACDRSHPKTEEIYATL 772
            FVA D SHP+  +I A L
Sbjct: 456 EFVAGDTSHPQFTQINAFL 474



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 170/359 (47%), Gaps = 35/359 (9%)

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M  + V P       +L++C   G    G A H  ++K+GF+  + + + L+D Y K GD
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L+ A++VF GM  R+VVA N+MI    ++G  EEA  +F  MT    E    S  S+++ 
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMT----ERNSCSWNSMITC 116

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVT 351
              L  ++  +       +     D V  ++II+ Y K   L  A+ +F  M   R+ VT
Sbjct: 117 YCKLGDINSARLMFDCNPVK----DVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVT 172

Query: 352 WNLLIASYVQSGQSDVVVAS--------------SIVDMYAKCER---IDNAKQVFNSII 394
           WN +I++YVQ G+    ++               ++V + + C     +D  + +   I 
Sbjct: 173 WNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIR 232

Query: 395 LR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
            +    DVVL N L+  Y   G    A  +F+ +       NI  WNS+I+G   NG+  
Sbjct: 233 TKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLS----RKNIFCWNSIIVGLGMNGRGE 288

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITC 508
           EA   F+ M+  G++P+ +T+  ++SG + +   +    +F EML   G++P      C
Sbjct: 289 EAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGC 347



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 203/458 (44%), Gaps = 74/458 (16%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L+ C    +   G+  H +I+K G  F  +  ++T L+ FYAK   L  A R+F  +  
Sbjct: 16  ILRSCAISGEAQLGEAFHCQIMKMG--FEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPR 73

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++V +  A+I    + G  E+A   F  M E      N ++    K    LG +   R +
Sbjct: 74  RDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCK----LGDINSARLM 129

Query: 205 HGYVLKVGFDGC-----VFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGY 258
                   FD C     V   +++ID Y K   L  A+++F  M  ARN V WN+MI  Y
Sbjct: 130 --------FD-CNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAY 180

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           VQ G    AI +F +M  E V+PT V++ S+LSA A+L ALD G+  H       +++D 
Sbjct: 181 VQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDV 240

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
           VLG+++I+ Y K G LE A  VF  +  ++I  WN +I     +G+ +  +A+ IV    
Sbjct: 241 VLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIV---- 296

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
                                                        M+ EGI P+ +++  
Sbjct: 297 ---------------------------------------------MEKEGIKPDGVTFVG 311

Query: 439 VILGFLRNGQMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           ++ G   +G ++  +  F +M  + G++P +  +  ++  L +     EA+   + M   
Sbjct: 312 ILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM--- 368

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
            +KP++  +   L AC      + G  +   L+  D C
Sbjct: 369 PMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPC 406



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 132/281 (46%), Gaps = 7/281 (2%)

Query: 126 YAKCDALDVASRLFCRL-RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV 184
           Y K   L  A  LF  +   +N  +W  +I    + G    A+  F +MQ + V P    
Sbjct: 148 YCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVT 207

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
           + ++L AC  LG +  G  +HGY+        V + ++LIDMY KCG LE A  VF G+ 
Sbjct: 208 MVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLS 267

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            +N+  WNS+IVG   NG  EEAI  F  M  EG++P  V+   ILS  ++   L  G++
Sbjct: 268 RKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQR 327

Query: 305 AHAVAV-INGMELDNVLGSSIINFYSKVGLLEDA-EVVFSR-MVERDIVTWNLLIASYVQ 361
             +  + + G+E        +++   + G L++A E++ +  M    +V  +LL A  + 
Sbjct: 328 YFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQI- 386

Query: 362 SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
               D  +   +     + +  D    VF S +   +  W+
Sbjct: 387 --HKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWD 425



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 13/211 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+  +  +   A+ +  +M+  N +        LL  C +   +  G+ IH  I     
Sbjct: 177 ISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYI--RTK 234

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII---GLNCRVGLSEKAL 167
               +  +   L+  Y KC AL+ A  +F  L  KN+F W +II   G+N   G  E+A+
Sbjct: 235 RLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMN---GRGEEAI 291

Query: 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV-GFDGCVFVASSLIDM 226
             F+ M+++G+ PD      +L  C   G +  G+     +L V G +  V     ++D+
Sbjct: 292 AAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDL 351

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
            G+ G L+EA ++   M  +     NSM++G
Sbjct: 352 LGRAGYLKEALELIRAMPMKP----NSMVLG 378


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  320 bits (819), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 204/638 (31%), Positives = 323/638 (50%), Gaps = 75/638 (11%)

Query: 209  LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
            LK  F    F+ ++L+  Y + G L +AR+VFD +   N  ++N+++  + + G   +A 
Sbjct: 787  LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 269  RVFYEMTLEGVEPTRVSVTSILSA----SANLDAL------------------------- 299
             +F+ +     +P + S  ++++A    S   DAL                         
Sbjct: 847  ALFHAIP----DPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSAC 902

Query: 300  ------DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
                    G Q HA+   +    D  +GS++++ Y+K    E+A  VF  M ER+IV+WN
Sbjct: 903  AAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWN 962

Query: 354  LLIASYVQSGQ-----------------SDVVVASSIVDMYAKCERIDNAKQVFNSII-- 394
             LI  Y Q+G                   D V  +S++   A        +QV   ++  
Sbjct: 963  SLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKS 1022

Query: 395  ---LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE 451
                 D+VL N L+  YA  GR+  A  +F +M     S +++S  S+I G+ R+  + +
Sbjct: 1023 DRFREDMVLSNALVDMYAKCGRTRAARCVFDRMA----SRSVVSETSLITGYARSANVED 1078

Query: 452  AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511
            A+ +F QM    V+ N+I W  LI+   QN    EA+  F  +    + P+  T    L+
Sbjct: 1079 AQMVFSQM----VEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLN 1134

Query: 512  ACTDVASLRNGRAIHGYLI----RHDLCLPTPIVT--SLVDMYAKCGNIHQAKRVFDISP 565
            AC +VA L+ G+  H +++    R D    + +    SLVDMY K G+I    +VF+   
Sbjct: 1135 ACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMA 1194

Query: 566  SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLE 625
            +++   +NAMI G+A +G A +AL LF+ +      PDS+T   +L+AC H+GLV EG  
Sbjct: 1195 ARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRR 1254

Query: 626  LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685
             F  M  DH + PS +H+ C+++LL R G+L E   +I  M  +PDA +  SLL +C   
Sbjct: 1255 YFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLH 1314

Query: 686  NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSW 745
               E+ E+ +  L +L+P N G YV LSN YA  G+W +V +VR  MK +G+ K PGCSW
Sbjct: 1315 KNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSW 1374

Query: 746  IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVS 783
            I+IG ++ VF+A D  HP   EI+A L ++ M +  VS
Sbjct: 1375 IEIGRKVSVFLARDNGHPCKNEIHAILRIIQMQMSRVS 1412



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 177/618 (28%), Positives = 304/618 (49%), Gaps = 53/618 (8%)

Query: 127 AKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
           A C ++  A  LF  + +++  SW AII  + R G   +AL  F  M   G+ P +  + 
Sbjct: 96  AACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMA 155

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           +VL  C     +   R +HG++ K  F   V + ++L+D+YG C  L +AR+ FD ++  
Sbjct: 156 SVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEP 215

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           N ++WN ++  Y   G+ + A+ +F+ M   GV P   +V+  + A  + +AL+EG+  H
Sbjct: 216 NAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIH 275

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
           A  + +G E    + SS+++ Y+K G ++ A+ +F           NL       +   D
Sbjct: 276 AFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLF-----------NL-------APMKD 317

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
           +V+++SIV   A C RI +AK+VF  +  R++V WN +L  Y        A  LF QM+ 
Sbjct: 318 MVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQ 377

Query: 427 EGISPNIISWNSVI---LGFLRNGQMNEA---------------KDMFLQMQS------- 461
           E    + I+  SV+    G L  G+  E                K+  ++M S       
Sbjct: 378 ETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRS 437

Query: 462 --------LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
                   +G + +  +W +LISG  ++S  +EA L+    +++ + P+ +T + AL+AC
Sbjct: 438 AERLLLFEMGSERDSYSWNSLISGYERHSM-SEAALYALTKMQSEVTPNQSTFSSALAAC 496

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            ++  L+ G  IH Y+IR    +   + + L+DMY KC     + R+F+  PS+++ ++N
Sbjct: 497 ANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWN 556

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           +MI G A  G     L LF  +Q++GI  DS+TF   L +C   G V  G   F  M  D
Sbjct: 557 SMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMM-D 615

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
             + P +EH+ C++ LL + G + E    +  MP +P   +   +   C +    +L E 
Sbjct: 616 ESIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGER 675

Query: 694 ISEHLLQLEPDNPGNYVA 711
            ++ +    P  P  +VA
Sbjct: 676 AAKCINDSNPLTPVQFVA 693



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 231/472 (48%), Gaps = 64/472 (13%)

Query: 46   SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
            SY   I++L++  +  +A+  L  M   +F +    +   L  C  ++D  TG Q+HA +
Sbjct: 859  SYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALV 918

Query: 106  LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
             K+    A++ Y+ + L+  YAKC+  + A R+F  +  +N+ SW ++I    + G   +
Sbjct: 919  SKSP--HAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGE 976

Query: 166  ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVFVASSLI 224
            AL+ FV M + G  PD   L +V+ AC  L     GR VH  V+K   F   + ++++L+
Sbjct: 977  ALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALV 1036

Query: 225  DMYGKCG-------------------------------DLEEARKVFDGMIARNVVAWNS 253
            DMY KCG                               ++E+A+ VF  M+ +NV+AWN 
Sbjct: 1037 DMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNV 1096

Query: 254  MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
            +I  Y QNG  EEA+R+F  +  E V PT  +  ++L+A  N+  L  G+QAH   +  G
Sbjct: 1097 LIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEG 1156

Query: 314  M------ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
                   E D  +G+S+++ Y K G ++D   VF RM  RD V+WN +I  + Q+G++  
Sbjct: 1157 FRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAK- 1215

Query: 368  VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG---EASRLFYQM 424
                   D     ER+  +K+  +S+         T++   +  G SG   E  R F  M
Sbjct: 1216 -------DALHLFERMLCSKESPDSV---------TMIGVLSACGHSGLVEEGRRYFRSM 1259

Query: 425  -QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
             +  GI P+   +  +I    R G + E +++  +M    ++P+ + W +L+
Sbjct: 1260 TEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMS---MEPDAVLWASLL 1308



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 156/609 (25%), Positives = 267/609 (43%), Gaps = 110/609 (18%)

Query: 112  FARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG---------- 161
            F    ++   LV  YA+   L  A R+F  +   N FS+ A++  + R+G          
Sbjct: 791  FVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFH 850

Query: 162  -------LSEKALIGFVEMQEDG---------VSPDNFVL-----PNVLKACGALGWVGF 200
                    S  A+I  +     G         +  D+FVL      + L AC A      
Sbjct: 851  AIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRT 910

Query: 201  GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
            G  VH  V K      V++ S+L+DMY KC   EEAR+VF+ M  RN+V+WNS+I  Y Q
Sbjct: 911  GVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQ 970

Query: 261  NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA-VAVINGMELDNV 319
            NG   EA+ +F  M   G  P  V++ S++SA A L A  EG+Q HA V   +    D V
Sbjct: 971  NGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMV 1030

Query: 320  LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
            L +++++ Y+K G    A  VF RM  R +V+   LI  Y +S                 
Sbjct: 1031 LSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSAN--------------- 1075

Query: 380  CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP-------- 431
               +++A+ VF+ ++ ++V+ WN L+AAYA  G   EA RLF +++ E + P        
Sbjct: 1076 ---VEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNV 1132

Query: 432  ---------------------------------NIISWNSVILGFLRNGQMNEAKDMFLQ 458
                                             ++   NS++  +L+ G +++   +F +
Sbjct: 1133 LNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER 1192

Query: 459  MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
            M +     + ++W  +I G  QN    +A+  F+ ML +   P + T+   LSAC     
Sbjct: 1193 MAA----RDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGL 1248

Query: 519  LRNGRAIHGYLIRHDLCLPTPI-VTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMI 576
            +  GR     +      +P+    T ++D+  + G++ + + +  ++S   +  ++ +++
Sbjct: 1249 VEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLL 1308

Query: 577  SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD-HQ 635
                +H          KN++        +   +  N+  +  L N   EL  G ++D  +
Sbjct: 1309 GSCRLH----------KNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAEL--GKWADVFR 1356

Query: 636  VKPSMEHFG 644
            V+ SM+H G
Sbjct: 1357 VRSSMKHRG 1365



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/556 (24%), Positives = 236/556 (42%), Gaps = 89/556 (16%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I++ S+     EA+ L + M     +        +L  C    D+   +Q+H  I K   
Sbjct: 123 ITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRD- 181

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F  N  + T LV  Y  C  L  A R F  +   N  SW  I+      G+ + A+  F
Sbjct: 182 -FQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMF 240

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M   GV P  + + + + AC     +  GR +H +VL+ G++  V V SS++DMY KC
Sbjct: 241 FRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKC 300

Query: 231 GDLE-------------------------------EARKVFDGMIARNVVAWNSMIVGYV 259
           G ++                               +A++VF+GM  RN+V+WN+M+ GY+
Sbjct: 301 GAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYI 360

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           ++     A+ +F +M  E  E   +++ S+LSA   +  + +G++ HA A+  G     +
Sbjct: 361 RSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPI 420

Query: 320 LGSSIINFYSKVGLLEDAE--VVFSRMVERDIVTWNLLIASYVQSGQS------------ 365
           L ++++  YSK G L  AE  ++F    ERD  +WN LI+ Y +   S            
Sbjct: 421 LKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQS 480

Query: 366 ---------------------------------------DVVVASSIVDMYAKCERIDNA 386
                                                  D ++ S ++DMY KC + D +
Sbjct: 481 EVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYS 540

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
            ++F +   RDV+LWN+++   A  G+      LF +MQ +GI  + +++   ++  +  
Sbjct: 541 IRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISE 600

Query: 447 GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
           G +   +  F  M    + P +  +  +I  L ++ C  E   F + M     +P+T   
Sbjct: 601 GHVRLGRSYFTLMMDESIIPRIEHYECMIELLGKHGCMVELEDFVEHM---PFEPTTAMW 657

Query: 507 TCALSACTDVASLRNG 522
                 C +  + + G
Sbjct: 658 LRIFDCCREYGNRKLG 673



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 126/529 (23%), Positives = 239/529 (45%), Gaps = 100/529 (18%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            F+ +  I+    CG + +AR++FD M  R+  +WN++I    + G   EA+ +F  M  
Sbjct: 85  TFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS 144

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
            G+ P   ++ S+LS  A    L   +Q H        + + +LG+++++ Y    LL D
Sbjct: 145 LGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLAD 204

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSD------------------------------ 366
           A   F  ++E + ++WN+++  Y  +G  D                              
Sbjct: 205 ARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRD 264

Query: 367 ----------------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                                 V V SS+VDMYAKC  +D A+ +FN   ++D+V+  ++
Sbjct: 265 NNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSI 324

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           ++  A  GR  +A R+F  M+      N++SWN+++ G++R+  +  A  +F QM+    
Sbjct: 325 VSGLASCGRIADAKRVFEGMK----ERNLVSWNAMLTGYIRSMDLTGALLLFQQMR---- 376

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
                                      QE  E        T+   LSACT +  +  G  
Sbjct: 377 ---------------------------QETREF----DAITLGSVLSACTGILDIGKGEE 405

Query: 525 IHGYLIRHDLCLPTPIV-TSLVDMYAKCGNIHQAKR--VFDISPSKELPVYNAMISGYAM 581
           +H + I+      +PI+  +LV MY+KCG +  A+R  +F++   ++   +N++ISGY  
Sbjct: 406 VHAFAIKCGF-FSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYER 464

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD-HQVKPSM 640
           H ++  AL     +Q + + P+  TF++ L AC++  L+ +G+++   M    +++   +
Sbjct: 465 HSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDIL 523

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
                ++++  +C   D ++R+    P   D  +  S++  C  S + E
Sbjct: 524 R--SVLIDMYCKCRQFDYSIRIFEARP-SRDVILWNSMIFGCAYSGKGE 569



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 163/731 (22%), Positives = 294/731 (40%), Gaps = 134/731 (18%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV----------------------- 134
           G+ IHA +L++G  +  + +V + +V  YAKC A+D                        
Sbjct: 271 GRCIHAFVLRHG--YEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGL 328

Query: 135 --------ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
                   A R+F  ++ +N+ SW A++    R      AL+ F +M+++    D   L 
Sbjct: 329 ASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLG 388

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK--VFDGMI 244
           +VL AC  +  +G G  VH + +K GF     + ++L+ MY KCG L  A +  +F+   
Sbjct: 389 SVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGS 448

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            R+  +WNS+I GY ++ ++E A+    +M  E V P + + +S L+A AN+  L +G Q
Sbjct: 449 ERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQ 507

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            HA  +  G E+D++L S +I+ Y K    + +  +F     RD++ WN +I     SG+
Sbjct: 508 IHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGK 567

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD----LGRSGEASRL 420
            +       +D++ + ++          I    V     L++  ++    LGRS      
Sbjct: 568 GEYG-----LDLFDEMQK--------QGIKADSVTFLGALVSCISEGHVRLGRS-----Y 609

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS---- 476
           F  M  E I P I  +  +I    ++G M E +D    ++ +  +P    W  +      
Sbjct: 610 FTLMMDESIIPRIEHYECMIELLGKHGCMVELEDF---VEHMPFEPTTAMWLRIFDCCRE 666

Query: 477 ------GLTQNSCGNEA-----ILFFQ----EMLETGIKPSTTTITCALSACTDVASLRN 521
                 G     C N++     + F      E  + G +  +T+ +     C ++     
Sbjct: 667 YGNRKLGERAAKCINDSNPLTPVQFVATVDYESNDGGREAESTSFSSEGEGCEELPFSLE 726

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP----------- 570
           G A           LP P+ T  + ++      H    V  +  S  L            
Sbjct: 727 GEASGS--------LPAPLTTRPLAIWYGMARHHHHHFVSHLRASAPLADLLRSAPNLPA 778

Query: 571 ------------------VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
                             + N ++S YA  G   +A  +F  +      P++ ++  +L+
Sbjct: 779 ARAAHARALKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPH----PNTFSYNALLS 834

Query: 613 ACSHAGLVNEGLELFVGMFSDHQV-KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP- 670
           A +  G   +   LF      H +  P    +  V+  L++     +AL  +  M  D  
Sbjct: 835 AHARLGRPADARALF------HAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDF 888

Query: 671 --DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV--ALSNAYAASGRWNEVS 726
             +A+   S LS C    ++     +   L+   P     Y+  AL + YA      E  
Sbjct: 889 VLNAYSFASALSACAAEKDSRTGVQV-HALVSKSPHAKDVYIGSALLDMYAKCEWPEEAR 947

Query: 727 QVRDIMKEKGL 737
           +V + M E+ +
Sbjct: 948 RVFEAMPERNI 958



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%)

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           +PT +    ++  A CG++  A+ +FD+ P ++   +NA+I+  +  G   EAL+LF N+
Sbjct: 83  VPTFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNM 142

Query: 596 QQKGIDPDSITFTNILNACS 615
              GI P   T  ++L+ C+
Sbjct: 143 NSLGIRPKDATMASVLSCCA 162


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 184/570 (32%), Positives = 291/570 (51%), Gaps = 62/570 (10%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +H  ++         + + LI        +  +  VF+    +N+  +N++I G   N  
Sbjct: 100 IHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSH 159

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
              AI  F  M   G++P R++   +L + A L + + G   H + +  G+ELD+     
Sbjct: 160 FFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSF---- 215

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
                                                        V  S+VDMY K E++
Sbjct: 216 ---------------------------------------------VRVSLVDMYVKVEKL 230

Query: 384 DNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
            +A +VF+    R       +LWN L+      G   +A +LF  M         +SW++
Sbjct: 231 GSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMP----KKENVSWST 286

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I GF +NG M+ A ++F QM     + N+++WTT++ G ++N    +A+  F +MLE G
Sbjct: 287 LIDGFAKNGDMDRAMELFDQMP----EKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEG 342

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           ++P+  TI  ALSAC  +  L  G  IH Y+  + L L   + T+LVDMYAKCGNI  A 
Sbjct: 343 VRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESAS 402

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
            VF  +  K +  +  MI G+A+HG + +A+A FK +   GI PD + F  +L AC H+G
Sbjct: 403 EVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSG 462

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
            V+ GL  F  M  D+ ++PSM+H+  +V++L R G L EALR I  MP +PD  I G+L
Sbjct: 463 QVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGAL 522

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
              C    +T++A++    LL+LEP + GNY+ LSNAYAA G+W +  +VR +M+ +G+ 
Sbjct: 523 FCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVH 582

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           KN G S I++  ++H FV+ D  H  ++ I
Sbjct: 583 KNSGWSCIEVEGQVHRFVSGDHDHKDSKAI 612



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 162/359 (45%), Gaps = 33/359 (9%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
           ++  L++GC     M    ++   + K      +     + L+  +AK   +D A  LF 
Sbjct: 252 LWNVLIKGCCKAGSMKKAVKLFKAMPK------KENVSWSTLIDGFAKNGDMDRAMELFD 305

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
           ++  KNV SW  ++    R G SEKAL  F +M E+GV P+ F + + L AC  +G +  
Sbjct: 306 QMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEA 365

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G  +H Y+   G      + ++L+DMY KCG++E A +VF     +++  W  MI G+  
Sbjct: 366 GLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAI 425

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +G +E+AI  F +M   G++P  V   ++L+A  +   +D G     +   + M LD  +
Sbjct: 426 HGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIG-----LNFFDSMRLDYCI 480

Query: 321 GSS------IINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSI 373
             S      I++   + G L++A     RM +  D V W  L  +          +A   
Sbjct: 481 EPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCAC--RAHKKTKMAKFA 538

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           ++   K E       +F             L  AYA LG+  +A R+   MQ  G+  N
Sbjct: 539 LNKLLKLEPTHTGNYIF-------------LSNAYAALGQWEDAERVRVLMQNRGVHKN 584



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 189/446 (42%), Gaps = 89/446 (19%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII-GLN 157
            QIHA+I+ +    + +  + T+L+   +   +++ +  +F   + KN+F++ A+I GL 
Sbjct: 98  HQIHAQIIIHN--LSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLT 155

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
                   A+  F  M   G+ PD    P VLK+   L     G A+H  +L+ G +   
Sbjct: 156 TNSHFFN-AIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDS 214

Query: 218 FVASSLIDMY------------------------------------GKCGDLEEARKVFD 241
           FV  SL+DMY                                     K G +++A K+F 
Sbjct: 215 FVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFK 274

Query: 242 GMIARNVVAWNSMIVGYVQ-------------------------------NGLNEEAIRV 270
            M  +  V+W+++I G+ +                               NG +E+A+ +
Sbjct: 275 AMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSM 334

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK 330
           F +M  EGV P   ++ S LSA A +  L+ G + H     NG+ L   LG+++++ Y+K
Sbjct: 335 FSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAK 394

Query: 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVF 390
            G +E A  VF    ++ I TW ++I  +   G S+  +A                KQ+ 
Sbjct: 395 CGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIAC--------------FKQMM 440

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQM 449
            + I  D V++  LL A    G+       F  M+L+  I P++  +  ++    R+GQ+
Sbjct: 441 FAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQL 500

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLI 475
            EA     +M    + P+ + W  L 
Sbjct: 501 KEALRFIERMP---MNPDFVIWGALF 523



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 117/284 (41%), Gaps = 31/284 (10%)

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAI 525
           PN    TT IS  ++N   +     F       I P+T T    +S      ++     I
Sbjct: 48  PNPPEITTTISKTSENKPKSSLSALF-------IPPTTPTEAHFISLIHGSKTILQLHQI 100

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           H  +I H+L   + I T L+   +   +I+ +  VF+    K L  +NA+I G   +   
Sbjct: 101 HAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHF 160

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV-------GMFSDHQVKP 638
             A+  F+ + + GI PD +T+  +L   S AGL +  L + +       G+  D  V+ 
Sbjct: 161 FNAIFHFRLMLRSGIKPDRLTYPFVLK--SMAGLFSTELGMAIHCMILRCGIELDSFVRV 218

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD----AHIIGSLLSTCVKSNETELAEYI 694
           S+      V++  +   L  A +V    P   D    A +   L+  C K+   + A   
Sbjct: 219 SL------VDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKA--- 269

Query: 695 SEHLLQLEPDNPG-NYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
              L +  P     ++  L + +A +G  +   ++ D M EK +
Sbjct: 270 -VKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNV 312


>gi|297811097|ref|XP_002873432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319269|gb|EFH49691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 970

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 223/742 (30%), Positives = 369/742 (49%), Gaps = 57/742 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQ-GC-VYKRDMYTGQQIHARILKN 108
           IS  S+    R A  +   M+C   +     +G L+   C + + D+   +QI   I K+
Sbjct: 178 ISVYSQTGDQRFAFKMFYSMQCDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKS 237

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G  F  + +V + LV  +AK  +L  A ++F ++  +N  +   ++    R    E+A  
Sbjct: 238 G--FLTDLFVGSGLVSAFAKSGSLIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATK 295

Query: 169 GFVEMQED-GVSPDNFV-LPNVLKACGALGWVGF--GRAVHGYVLKVGF-DGCVFVASSL 223
            F++M     VSP+++V L +          VG   GR VHG+V+  G  D  V + + L
Sbjct: 296 LFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGL 355

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           ++MY KCG + +AR+VF  M  ++ V+WNSMI G  QN    EA+  +  M    + P  
Sbjct: 356 VNMYAKCGSIADARRVFCFMTEKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEILPGS 415

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            ++ S +S+ A+L     G+Q H  ++  G++L+  + ++++  Y++ G L +   +FS 
Sbjct: 416 FTLISSISSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKIFSS 475

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           M E D V+WN +I +   S +S     +  ++          A Q  N I    V+    
Sbjct: 476 MPEHDQVSWNSIIGALASSERSLPEAVACFLNAL-------RAGQKLNRITFSSVLS-AV 527

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
              ++ +LG+      L Y +  E  +      N++I  + + G+M+  + +F +M    
Sbjct: 528 SSLSFGELGKQIHGLALKYNIADEATTE-----NALIACYGKCGEMDGCEKIFSRMSE-- 580

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
            + + +TW ++ISG   N    +A+     M++TG +  +      LSA   VA+L  G 
Sbjct: 581 -RRDDVTWNSMISGYIHNELLAKALDLVWFMMQTGQRLDSFMYATVLSAFASVATLERGM 639

Query: 524 AIHGYLIRHDLCLPTPIV--TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
            +H   +R   CL + +V  ++LVDMY+KCG +  A R F+  P                
Sbjct: 640 EVHACSVR--ACLESDVVVGSALVDMYSKCGRLDYALRFFNTMP---------------- 681

Query: 582 HGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
                    LF N++  G   PD +TF  +L+ACSHAGL+ EG + F  M   + + P +
Sbjct: 682 ---------LFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRI 732

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN--ETELAEYISEHL 698
           EHF C+ +LL R G LD+    I  MP  P+  I  ++L  C ++N  + EL +  +E L
Sbjct: 733 EHFSCMADLLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEML 792

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
            QLEP+N  NYV L N YAA GRW ++ + R  MK+  ++K  G SW+ + + +H+FVA 
Sbjct: 793 FQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAG 852

Query: 759 DRSHPKTEEIYATLALLGMHVR 780
           D+SHP  + IY  L  L   +R
Sbjct: 853 DKSHPDADVIYKKLKELNRKMR 874



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 186/765 (24%), Positives = 333/765 (43%), Gaps = 140/765 (18%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
            +Q C+  R     +  H+R+ KNG    ++ Y+   L+  Y +      A ++F  + +
Sbjct: 9   FVQSCIGHRG--AAKLFHSRLYKNG--LEKDVYLCNNLINAYLETGDSVSARKVFDEMPL 64

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG--FGR 202
           +N  SWA ++    R G  ++AL+   +M ++GV  +++   + L+AC  L  VG  FGR
Sbjct: 65  RNCVSWACVVSGYSRNGEHKEALVFLRDMVKEGVFSNHYAFVSALRACQELDSVGILFGR 124

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKC-GDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
            +HG + K+ +     V++ LI MY KC G L  A + FD +  +N V+WNS+I  Y Q 
Sbjct: 125 QIHGLLFKLSYAVDAVVSNVLISMYWKCGGSLGYALRAFDDVQVKNSVSWNSIISVYSQT 184

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI--NGMELDNV 319
           G    A ++FY M  +G  PT  +  S+++ + +L   D       +  I  +G   D  
Sbjct: 185 GDQRFAFKMFYSMQCDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGFLTDLF 244

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ------------------ 361
           +GS +++ ++K G L  A  +F++M  R+ VT N L+   V+                  
Sbjct: 245 VGSGLVSAFAKSGSLIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMI 304

Query: 362 --SGQSDVVVASS-------------------------------------IVDMYAKCER 382
             S +S V++ SS                                     +V+MYAKC  
Sbjct: 305 DVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGS 364

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAA-------------YADLGR---------------- 413
           I +A++VF  +  +D V WN+++               Y  + R                
Sbjct: 365 IADARRVFCFMTEKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEILPGSFTLISSISS 424

Query: 414 --SGEASRLFYQMQLE----GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
             S + ++L  Q+  E    GI  N+   N+++  +   G +NE + +F  M     + +
Sbjct: 425 CASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKIFSSMP----EHD 480

Query: 468 LITWTTLISGLTQNSCG-NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
            ++W ++I  L  +     EA+  F   L  G K +  T +  LSA + ++    G+ IH
Sbjct: 481 QVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIH 540

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLA 585
           G  +++++        +L+  Y KCG +   +++F  +S  ++   +N+MISGY  + L 
Sbjct: 541 GLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELL 600

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH--- 642
            +AL L   + Q G   DS  +  +L+A +    +  G+E+         V+  +E    
Sbjct: 601 AKALDLVWFMMQTGQRLDSFMYATVLSAFASVATLERGMEVHAC-----SVRACLESDVV 655

Query: 643 -FGCVVNLLSRCGNLDEALRVILTMP----------CDPDAHIIGSLLSTCVKSNETELA 691
               +V++ S+CG LD ALR   TMP            PD      +LS C  +   E  
Sbjct: 656 VGSALVDMYSKCGRLDYALRFFNTMPLFANMKLDGQTPPDHVTFVGVLSACSHAGLLE-- 713

Query: 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
                       +   ++ ++S++Y  + R    S + D++   G
Sbjct: 714 ------------EGFKHFESMSDSYGLAPRIEHFSCMADLLGRAG 746



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 193/439 (43%), Gaps = 48/439 (10%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+ L +     EAV+    M+      G       +  C   +    GQQIH   
Sbjct: 382 SWNSMITGLDQNSCFIEAVERYQSMRRHEILPGSFTLISSISSCASLKWAKLGQQIHGES 441

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           LK G     N  V   L+  YA+   L+   ++F  +   +  SW +IIG    +  SE+
Sbjct: 442 LKLG--IDLNVSVSNALMTLYAETGCLNECRKIFSSMPEHDQVSWNSIIGA---LASSER 496

Query: 166 AL----IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVAS 221
           +L      F+     G   +     +VL A  +L +   G+ +HG  LK          +
Sbjct: 497 SLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTEN 556

Query: 222 SLIDMYGKCGDLEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           +LI  YGKCG+++   K+F  M   R+ V WNSMI GY+ N L  +A+ + + M   G  
Sbjct: 557 ALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMMQTGQR 616

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
                  ++LSA A++  L+ G + HA +V   +E D V+GS++++ YSK G L+ A   
Sbjct: 617 LDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRF 676

Query: 341 FSRM-----------VERDIVTWNLLIASYVQSG--QSDVVVASSIVDMYAKCERIDNAK 387
           F+ M              D VT+  ++++   +G  +       S+ D Y    RI++  
Sbjct: 677 FNTMPLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEH-- 734

Query: 388 QVFNSIILRDVVLWNTLLAAYAD-LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR- 445
                             +  AD LGR+GE  +L   ++   + PN++ W +V+    R 
Sbjct: 735 -----------------FSCMADLLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRA 777

Query: 446 NGQMNE----AKDMFLQMQ 460
           NG+  E    A +M  Q++
Sbjct: 778 NGRKAELGKKAAEMLFQLE 796


>gi|302798571|ref|XP_002981045.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
 gi|300151099|gb|EFJ17746.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
          Length = 833

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 226/785 (28%), Positives = 369/785 (47%), Gaps = 105/785 (13%)

Query: 32  KLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVY 91
           ++RE D        S+   IS+ ++    R+A+DL TEM   +       +  LL+ C  
Sbjct: 58  RMRERD------VVSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDS 111

Query: 92  KRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWA 151
              +  G+QIHAR+         +  V   ++  Y KC+  D+A  +F  +R +++ SW 
Sbjct: 112 PEFLEDGKQIHARV-SALQLLESDVPVANAVMGMYRKCERADLAMAVFSEMRERDLISWN 170

Query: 152 AIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV 211
             I  N   G     L     MQ +G++PD     + L AC     +  GR +H  VL+ 
Sbjct: 171 NAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRSLSNGRLIHALVLER 230

Query: 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF 271
           G +G V + ++L+ MYG+CG LE AR++F  M  RNVV+WN+M+     N    EAI +F
Sbjct: 231 GMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELF 290

Query: 272 YEM-TLEGVEPTRVSVTSILSASANLDALDEGKQAHAV---------------------- 308
             M  +  VEPTRVS  ++L+A    +AL EG++ HA+                      
Sbjct: 291 KRMVAVAMVEPTRVSFITVLNAVTTPEALAEGRRIHAMIQERQLLSQIEVANALVTMYGR 350

Query: 309 --------AVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRM-VER---DIVTWNLL 355
                    V + ME  +++  +++I+ Y++ GL  +   +F RM  ER   D +T+ + 
Sbjct: 351 CGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMA 410

Query: 356 IASYVQSGQSD---VVVASSIVDMYAKCERIDNAKQ----------------------VF 390
           + +  +    D    V   S+   +  C  + NA                        +F
Sbjct: 411 LDACAEIRDLDSGRTVHHLSVESGFGSCISVANATMHLYSSCSSSSSSSSSLMEVVAGIF 470

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLR 445
            S+  RDV+ WNT++  Y   G S  A  +F +M LEGI  N +++ S++       FLR
Sbjct: 471 ESMAARDVISWNTMITGYVQAGDSFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRAFLR 530

Query: 446 NGQMNEAKDMFLQMQSLGVQP-----------------------------NLITWTTLIS 476
            G+    + +  Q   L   P                             NL +W ++IS
Sbjct: 531 QGETIH-RRVINQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMIS 589

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
               +    +A    + M   G+ P   T    L+AC    ++R+G+ IH  +I   L  
Sbjct: 590 AYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRHGKMIHARIIDSGLEK 649

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
            T +  +LV+ Y+KCGN+  A  +F     +++  +N +I+G+A +G A EAL     +Q
Sbjct: 650 DTVVANALVNFYSKCGNLDTATSLFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQ 709

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           Q G+ PD+ITF  IL+A SHAG + +G + FV M  DH+++  +EH+GC+++LL R G +
Sbjct: 710 QDGVRPDAITFLTILSASSHAGFLRQGGDDFVSMAVDHELERGVEHYGCMIDLLGRAGRI 769

Query: 657 DEALRVILTMPCDPDAHIIG-SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
            +A   +  M  D D  +   +LLS C    + E A+ ++  ++++ P +   YVALSN 
Sbjct: 770 GDAEYFVSAMR-DEDKEVSWMTLLSACEVHGDEERAKRVAGSIVEMNPQHSSAYVALSNL 828

Query: 716 YAASG 720
           YA  G
Sbjct: 829 YATCG 833



 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 190/674 (28%), Positives = 328/674 (48%), Gaps = 100/674 (14%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           Y  L++ C     +  G+++H  + ++ D   R+ +   +LV  Y +C +LD A ++F R
Sbjct: 1   YARLMRACGISGALEQGRRVHGHVQRHAD--DRSLFFGNRLVNMYRRCSSLDEARKVFDR 58

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +R ++V SW A+I    + G   +AL  F EM    + P+      +L+AC +  ++  G
Sbjct: 59  MRERDVVSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDSPEFLEDG 118

Query: 202 RAVHGYVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           + +H  V  +   +  V VA++++ MY KC   + A  VF  M  R++++WN+ I    +
Sbjct: 119 KQIHARVSALQLLESDVPVANAVMGMYRKCERADLAMAVFSEMRERDLISWNNAIAANAE 178

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +G     + +   M LEG+ P +V+  S L+A     +L  G+  HA+ +  GME D VL
Sbjct: 179 SGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRSLSNGRLIHALVLERGMEGDVVL 238

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS---------------------- 358
           G++++  Y + G LE A  +F RM ER++V+WN ++AS                      
Sbjct: 239 GTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAM 298

Query: 359 -----------------------------YVQSGQ--SDVVVASSIVDMYAKCERIDNAK 387
                                         +Q  Q  S + VA+++V MY +C  + +A+
Sbjct: 299 VEPTRVSFITVLNAVTTPEALAEGRRIHAMIQERQLLSQIEVANALVTMYGRCGGVGDAE 358

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW----------- 436
           +VF+++  RD+V WN +++AYA  G + E   LF++M+ E + P+ I++           
Sbjct: 359 RVFSAMERRDLVSWNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACAEIR 418

Query: 437 ----------NSVILGF-----LRNGQMN---------EAKDMFLQM-----QSLGVQPN 467
                      SV  GF     + N  M+          +    +++     +S+  + +
Sbjct: 419 DLDSGRTVHHLSVESGFGSCISVANATMHLYSSCSSSSSSSSSLMEVVAGIFESMAAR-D 477

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
           +I+W T+I+G  Q      A+  F+ ML  GI+ +  T    LS C   A LR G  IH 
Sbjct: 478 VISWNTMITGYVQAGDSFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRAFLRQGETIHR 537

Query: 528 YLIRHDLCLPT-PIV-TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
            +I     L + PIV  ++V+MY KCG +  A+ +F+ +  + L  +N+MIS YA+HG A
Sbjct: 538 RVINQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRA 597

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            +A  L + ++++G+ PD +TF  +LNAC   G V  G ++      D  ++        
Sbjct: 598 EQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRHG-KMIHARIIDSGLEKDTVVANA 656

Query: 646 VVNLLSRCGNLDEA 659
           +VN  S+CGNLD A
Sbjct: 657 LVNFYSKCGNLDTA 670



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           + AC    +L  GR +HG++ RH           LV+MY +C ++ +A++VFD    +++
Sbjct: 5   MRACGISGALEQGRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMRERDV 64

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             + AMIS YA  G   +AL LF  +    +DP+ +TF  +L AC     + +G ++   
Sbjct: 65  VSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDSPEFLEDGKQIHAR 124

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           + +   ++  +     V+ +  +C   D A+ V   M
Sbjct: 125 VSALQLLESDVPVANAVMGMYRKCERADLAMAVFSEM 161


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 202/642 (31%), Positives = 337/642 (52%), Gaps = 55/642 (8%)

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED 176
           Y   K + +  +   ++ A  LF      N  +W  +I    +     KA   F EM   
Sbjct: 58  YSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNR 117

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
            +   N +L   + +CG      F         ++    CV   ++++  Y K G +++A
Sbjct: 118 DIVSWNLMLSGYI-SCGG----KFVERARNMFDQMPETDCV-SWNTMLSGYAKSGMMDKA 171

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR--VSVTSILSASA 294
            ++F+ M  RNVV+WN+M+ GY+ NG  E+AI  F  M      P R   S+ +++S   
Sbjct: 172 EELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLM------PKRDSASLRALISGLI 225

Query: 295 NLDALDEGKQ---AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM------- 344
             D L E ++    +   V  G  +D    +++I  Y + G+  +A  +F R+       
Sbjct: 226 QNDKLVEAERILLQYGGNVGKGDLVDAY--NTLIAGYGQKGMAYEARKLFDRIPLCCDCG 283

Query: 345 -VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
              R++++WN +I  YV++G  D+V                +A+++F+ ++ RD   WNT
Sbjct: 284 YSRRNVISWNSMIMCYVRAG--DIV----------------SARELFDKMVERDTFSWNT 325

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           +++ Y  +    EAS LF +M      P+ +SWN +I GF   G +  A D+F ++    
Sbjct: 326 MISGYVQILDMKEASNLFSRMP----EPDTLSWNMMISGFSEIGSLKLAHDLFKRIP--- 378

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
            + +L++W ++ISG  +N     A+  F +M   G KP   T++  LSAC  +  L  G 
Sbjct: 379 -EKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGT 437

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMH 582
            IH  L+        PI  SLV MY++CG I +A+ VFD ++  +++  +NAMI GYA H
Sbjct: 438 QIHQ-LVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYH 496

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G A EAL LF  ++Q  + P  ITF ++LNAC+HAGL+ EG   F  M + H +KP +EH
Sbjct: 497 GFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEH 556

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           +  +V+++ R G L+EA+ +I +MPC+PD  + G+LL  C   N  E+A   +E L++L+
Sbjct: 557 YAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQ 616

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
           P++   YV L N YA  GRW++ +++R +M++  ++K+ G S
Sbjct: 617 PESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYS 658


>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
 gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score =  319 bits (818), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 226/775 (29%), Positives = 371/775 (47%), Gaps = 106/775 (13%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGEL--LQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           REA+     M      I P+ Y     L+ C    D   G +IH  I + G     + Y+
Sbjct: 81  REALGFFGYMS-EEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMG--LESDVYI 137

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
            T LV  Y K   L  A ++F ++ VK+V +W  ++    + G S  AL+ F +M+   V
Sbjct: 138 GTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCV 197

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS-LIDMYGKCGDLEEAR 237
             D+  L N++ A   L      R +HG V+K GF   +F  SS LIDMY  C DL  A 
Sbjct: 198 DIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGF---IFAFSSGLIDMYCNCADLYAAE 254

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
            VF+ +  ++  +W +M+  Y  NG  EE + +F  M    V   +V+  S L A+A + 
Sbjct: 255 SVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVG 314

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
            L +G   H  AV  G+  D  + +S+++ YSK G LE AE +F  + +RD+V+W+ +IA
Sbjct: 315 DLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIA 374

Query: 358 SYVQSGQSDVVV------------------------------------------------ 369
           SY Q+GQ D  +                                                
Sbjct: 375 SYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIES 434

Query: 370 ----ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
               A++++ MYAKC R   A + F  + ++D V +N L   Y  +G + +A  ++  M+
Sbjct: 435 ELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMK 494

Query: 426 LEGISPNI---------------ISWNSVILG-FLRNGQMNEAK------DMFLQMQSL- 462
           L G+ P+                 +  S + G  +++G  +E        +MF +  +L 
Sbjct: 495 LHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTKCDALA 554

Query: 463 ---------GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
                    G + + ++W  +++G   +    EA+  F++M     +P+  T    + A 
Sbjct: 555 AAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFVNIVRAA 614

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            ++++LR G ++H  LI+   C  TP+  SLVDMYAKCG I  +++ F    +K +  +N
Sbjct: 615 AELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNKYIVSWN 674

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            M+S YA HGLA  A++LF ++Q+  + PDS++F ++L+AC HAGLV EG  +F  M   
Sbjct: 675 TMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEGKRIFEEMGER 734

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           H+++  +EH+ C+V+LL + G   EA+ ++  M       + G+LL++        L+  
Sbjct: 735 HKIEAEVEHYACMVDLLGKAGLFGEAVEMMRRMRVKTSVGVWGALLNSSRMHCNLWLSNA 794

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
               L++LEP NP +       Y+   R  EV+ V  I      +K P CSWI++
Sbjct: 795 ALCQLVKLEPLNPSH-------YSQDRRLGEVNNVSRI------KKVPACSWIEV 836



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 166/691 (24%), Positives = 296/691 (42%), Gaps = 124/691 (17%)

Query: 66  LLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVF 125
           LL   +C+NF+   +++G L+          +G + H +++     F R           
Sbjct: 9   LLMLRECKNFRCLLQVHGSLI---------VSGLKPHNQLINAYSLFQRQ---------- 49

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED-GVSPDNFV 184
                  D++  +F  +R   V  W ++I    R GL  +AL  F  M E+ G+ PD + 
Sbjct: 50  -------DLSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYS 102

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI 244
               LKAC        G  +H  + ++G +  V++ ++L++MY K  DL  AR+VFD M 
Sbjct: 103 FTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMH 162

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
            ++VV WN+M+ G  QNG +  A+ +F++M    V+   VS+ +++ A + L+  D  + 
Sbjct: 163 VKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRC 222

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG- 363
            H + +  G        S +I+ Y     L  AE VF  +  +D  +W  ++A+Y  +G 
Sbjct: 223 LHGLVIKKGFIF--AFSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNGF 280

Query: 364 --------------------------------QSDVVVASSIVD---------------- 375
                                             D+V   +I D                
Sbjct: 281 FEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVATS 340

Query: 376 ---MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
              MY+KC  ++ A+Q+F +I  RDVV W+ ++A+Y   G+  EA  LF  M    I PN
Sbjct: 341 LMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPN 400

Query: 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS---------------- 476
            ++  SV+ G          K +        ++  L T T +IS                
Sbjct: 401 AVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFE 460

Query: 477 ---------------GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
                          G TQ    N+A   ++ M   G+ P + T+   L  C   +    
Sbjct: 461 RLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYAR 520

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISGYA 580
           G  ++G +I+H       +  +L++M+ KC  +  A  +FD    ++  V +N M++GY 
Sbjct: 521 GSCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYL 580

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQ 635
           +HG A EA+A F+ ++ +   P+++TF NI+ A +    +  G+ +       G  S   
Sbjct: 581 LHGQAEEAVATFRQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTP 640

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           V  S+      V++ ++CG ++ + +  + +
Sbjct: 641 VGNSL------VDMYAKCGMIESSEKCFIEI 665



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 209/433 (48%), Gaps = 21/433 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+S  +  Q  EA+ L  +M   + +        +LQGC        G+ IH   
Sbjct: 368 SWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYA 427

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K  D  +  E   T ++  YAKC     A + F RL +K+  ++ A+     ++G + K
Sbjct: 428 IK-ADIESELE-TATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANK 485

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           A   +  M+  GV PD+  +  +L+ C        G  V+G ++K GFD    VA +LI+
Sbjct: 486 AFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALIN 545

Query: 226 MYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
           M+ KC  L  A  +FD     ++ V+WN M+ GY+ +G  EEA+  F +M +E  +P  V
Sbjct: 546 MFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAV 605

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           +  +I+ A+A L AL  G   H+  +  G      +G+S+++ Y+K G++E +E  F  +
Sbjct: 606 TFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEI 665

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
             + IV+WN ++++Y   G     +AS  V ++   +  +         +  D V + ++
Sbjct: 666 SNKYIVSWNTMLSAYAAHG-----LASCAVSLFLSMQENE---------LKPDSVSFLSV 711

Query: 405 LAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           L+A    G   E  R+F +M +   I   +  +  ++    + G   EA +M   M+ + 
Sbjct: 712 LSACRHAGLVEEGKRIFEEMGERHKIEAEVEHYACMVDLLGKAGLFGEAVEM---MRRMR 768

Query: 464 VQPNLITWTTLIS 476
           V+ ++  W  L++
Sbjct: 769 VKTSVGVWGALLN 781



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 38/245 (15%)

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           ++++ M  +C+      QV  S+I+  +   N L+ AY+   R   +  +F  ++     
Sbjct: 6   TNLLLMLRECKNFRCLLQVHGSLIVSGLKPHNQLINAYSLFQRQDLSRVIFDSVR----D 61

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
           P ++ WNS+I G+ R G   EA   F  M                               
Sbjct: 62  PGVVLWNSMIRGYTRAGLHREALGFFGYMSE----------------------------- 92

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
                E GI P   + T AL AC      + G  IH  +    L     I T+LV+MY K
Sbjct: 93  -----EKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCK 147

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
             ++  A++VFD    K++  +N M+SG A +G +  AL LF +++   +D D ++  N+
Sbjct: 148 ARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNL 207

Query: 611 LNACS 615
           + A S
Sbjct: 208 IPAVS 212


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  319 bits (818), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 185/619 (29%), Positives = 321/619 (51%), Gaps = 65/619 (10%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +H   +K G    +  A+ L+ +Y K  ++  A+K+FD +  RN   W  +I G+ + G 
Sbjct: 311 LHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGS 370

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
           +E    +F EM  +G  P + +++S+L   +  + L  GK  HA  + NG+++D VLG+S
Sbjct: 371 SEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNS 430

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
           I++ Y K  + E AE +F  M E D+V+WN++I +Y+++G                   +
Sbjct: 431 ILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGD------------------V 472

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL-- 441
           + +  +F  +  +DVV WNT++      G    A    Y M   G   + ++++  ++  
Sbjct: 473 EKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILA 532

Query: 442 ------------------------GFLRN---------GQMNEA----KDMFLQMQSLG- 463
                                   GF+R+         G+M++A    +D+ L +   G 
Sbjct: 533 SSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGN 592

Query: 464 -------VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
                   +  +++W +++SG   N    + +  F+ M+   +     T+T  +SAC + 
Sbjct: 593 ARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANA 652

Query: 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMI 576
             L  GR +H Y+ +    +   + +SL+DMY+K G++  A  VF  S    + ++ +MI
Sbjct: 653 GILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMI 712

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
           SGYA+HG  + A+ LF+ +  +GI P+ +TF  +LNACSHAGL+ EG   F  M   + +
Sbjct: 713 SGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCI 772

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
            P +EH   +V+L  R G+L +    I          +  S LS+C      E+ +++SE
Sbjct: 773 NPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSE 832

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
            LLQ+ P +PG YV LSN  A++ RW+E ++VR +M ++G++K PG SWIQ+ +++H FV
Sbjct: 833 MLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFV 892

Query: 757 ACDRSHPKTEEIYATLALL 775
             DRSHP+ +EIY+ L +L
Sbjct: 893 MGDRSHPQDDEIYSYLDIL 911



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 210/474 (44%), Gaps = 67/474 (14%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS  ++        +L  EM+ +           +L+ C    ++  G+ +HA +L+NG 
Sbjct: 362 ISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNG- 420

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               +  +   ++  Y KC   + A RLF  +   +V SW  +IG   R G  EK+L  F
Sbjct: 421 -IDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMF 479

Query: 171 VEMQEDGVSPDNFVLPNVLKA---------------CG----------------ALGWVG 199
             +    V   N ++  +L+                CG                +L  V 
Sbjct: 480 RRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVE 539

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI--------AR----- 246
            GR +HG VLK GFD   F+ SSL++MY KCG +++A  +   +         AR     
Sbjct: 540 LGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKE 599

Query: 247 ---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
               +V+W SM+ GYV NG  E+ ++ F  M  E V     +VT+I+SA AN   L+ G+
Sbjct: 600 PKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGR 659

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
             HA     G  +D  +GSS+I+ YSK G L+DA +VF +  E +IV W  +I+ Y   G
Sbjct: 660 HVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHG 719

Query: 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
           Q           M+A    I   +++ N  I+ + V +  +L A +  G   E  R F  
Sbjct: 720 QG----------MHA----IGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRM 765

Query: 424 MQ-LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           M+    I+P +    S++  + R G + + K+   +    G+      W + +S
Sbjct: 766 MKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKN---GISHLTSVWKSFLS 816



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 124/533 (23%), Positives = 226/533 (42%), Gaps = 109/533 (20%)

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
           +HA  +KNG     N      L+  YAK + +  A +LF  +  +N  +W  +I    R 
Sbjct: 311 LHALYVKNGSLQTLNP--ANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARA 368

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G SE     F EMQ  G  P+ + L +VLK C     +  G+ VH ++L+ G D  V + 
Sbjct: 369 GSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLG 428

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF--------- 271
           +S++D+Y KC   E A ++F+ M   +VV+WN MI  Y++ G  E+++ +F         
Sbjct: 429 NSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVV 488

Query: 272 ----------------------YEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVA 309
                                 Y M   G E + V+ +  L  +++L  ++ G+Q H + 
Sbjct: 489 SWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMV 548

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVF------------SRMVERD----IVTWN 353
           +  G + D  + SS++  Y K G ++ A ++             +R+  ++    IV+W 
Sbjct: 549 LKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWG 608

Query: 354 LLIASYVQSGQS------------------------------------------------ 365
            +++ YV +G+                                                 
Sbjct: 609 SMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKI 668

Query: 366 ----DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
               D  V SS++DMY+K   +D+A  VF      ++V+W ++++ YA  G+   A  LF
Sbjct: 669 GHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLF 728

Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLIS--GL 478
            +M  +GI PN +++  V+      G + E    F  M+ +  + P +   T+++   G 
Sbjct: 729 EEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGR 788

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
             +    +  +F     + GI   T+     LS+C    ++  G+ +   L++
Sbjct: 789 AGHLTKTKNFIF-----KNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQ 836


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  319 bits (818), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 202/642 (31%), Positives = 337/642 (52%), Gaps = 55/642 (8%)

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED 176
           Y   K + +  +   ++ A  LF      N  +W  +I    +     KA   F EM   
Sbjct: 58  YSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNR 117

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
            +   N +L   + +CG      F         ++    CV   ++++  Y K G +++A
Sbjct: 118 DIVSWNLMLSGYI-SCGG----KFVERARNMFDQMPETDCV-SWNTMLSGYAKSGTMDKA 171

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR--VSVTSILSASA 294
            ++F+ M  RNVV+WN+M+ GY+ NG  E+AI  F  M      P R   S+ +++S   
Sbjct: 172 EELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLM------PKRDSASLRALVSGLI 225

Query: 295 NLDALDEGKQ---AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM------- 344
             D L E ++    +   V  G  +D    +++I  Y + G+  +A  +F R+       
Sbjct: 226 QNDKLVEAERILLQYGGNVGKGDLVDAY--NTLIAGYGQKGMAYEARKLFDRIPLCCDCG 283

Query: 345 -VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
              R++++WN +I  YV++G  D+V                +A+++F+ ++ RD   WNT
Sbjct: 284 YSRRNVISWNSMIMCYVRAG--DIV----------------SARELFDKMVERDTFSWNT 325

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           +++ Y  +    EAS LF +M      P+ +SWN +I GF   G +  A D+F ++    
Sbjct: 326 MISGYVQILDMKEASNLFSRMP----EPDTLSWNMMISGFSEIGSLKLAHDLFKRIP--- 378

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
            + +L++W ++ISG  +N     A+  F +M   G KP   T++  LSAC  +  L  G 
Sbjct: 379 -EKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGT 437

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMH 582
            IH  L+        PI  SLV MY++CG I +A+ VFD ++  +++  +NAMI GYA H
Sbjct: 438 QIHQ-LVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYH 496

Query: 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
           G A EAL LF  ++Q  + P  ITF ++LNAC+HAGL+ EG   F  M + H +KP +EH
Sbjct: 497 GFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEH 556

Query: 643 FGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
           +  +V+++ R G L+EA+ +I +MPC+PD  + G+LL  C   N  E+A   +E L++L+
Sbjct: 557 YAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQ 616

Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
           P++   YV L N YA  GRW++ +++R +M++  ++K+ G S
Sbjct: 617 PESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYS 658


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  319 bits (818), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 179/544 (32%), Positives = 297/544 (54%), Gaps = 27/544 (4%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           VH ++++ G +   F+ +  I        +  +  VFD +++ +   WNS++ GY     
Sbjct: 48  VHAHLIQKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQ 107

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
             + I ++  M  E   P R +  S+L   A+   + EG   H   +  G++ D  + +S
Sbjct: 108 FVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTS 167

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
           ++N Y K GL++ A  VF  M ER                  +VV  ++++  Y+    +
Sbjct: 168 LVNLYGKGGLIDCARKVFDGMSER------------------NVVSWTAMIVGYSSIGNL 209

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
             AK++F+ +  R+V  WN ++  Y  +G    A + F +M       N++S+ ++I G+
Sbjct: 210 VEAKRLFDLMPERNVASWNAIIGGYMKMGDVKSAEKAFDEMP----EKNVVSFTTMIDGY 265

Query: 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
            + G M  A+++F +      + ++I W+ LISG TQN   NEA+  F EM    +KP  
Sbjct: 266 AKAGDMLSARNLFQK----APERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDK 321

Query: 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS-LVDMYAKCGNIHQAKRVFD 562
             +T  + AC+ + +L   + +  Y  R  + L    VT+ L+DM AKCGN+ +A  +F+
Sbjct: 322 FVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFE 381

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622
             P ++L  Y +++ G ++HG   +A++LF+ +  + + PD + FT IL ACS AGLV+E
Sbjct: 382 KMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDE 441

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC 682
           G   F  M   + + PS++H+ C+V+LLSR G L EA  +I ++P    A   G+LL  C
Sbjct: 442 GWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGAC 501

Query: 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
               ++ELAE ++  L+++EP+N GNYV LSN YAA+ RW +VS VR+ M E+GLRK PG
Sbjct: 502 KLYCDSELAEVVASRLIEIEPENAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPG 561

Query: 743 CSWI 746
           CSWI
Sbjct: 562 CSWI 565



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/522 (25%), Positives = 251/522 (48%), Gaps = 46/522 (8%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S FH  +S +K    +  V L +                LL+ C    D++   Q+HA +
Sbjct: 9   SRFHTTTSFAKTTNPKSNVSLYS-------------ISALLKLCKTHIDLH---QVHAHL 52

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           ++ G    ++ ++ T+ +        +  ++ +F R+   + F W +++   C       
Sbjct: 53  IQKG--LEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVD 110

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
            +  +V M+ +  +PD +  P++LK C + G +  G A+HG +L+ G D  ++V +SL++
Sbjct: 111 IISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVN 170

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           +YGK G ++ ARKVFDGM  RNVV+W +MIVGY   G   EA R+F  M     E    S
Sbjct: 171 LYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMP----ERNVAS 226

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRM 344
             +I+     +  +   ++A      + M   NV+  +++I+ Y+K G +  A  +F + 
Sbjct: 227 WNAIIGGYMKMGDVKSAEKA-----FDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKA 281

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
            ERDI+ W+ LI+ Y Q+GQ +  V  + ++M ++  + D  K V  S++L    L N  
Sbjct: 282 PERDIIAWSALISGYTQNGQPNEAV-KTFLEMSSRNVKPD--KFVLTSLMLACSQLGNLD 338

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           LA + D      A+R    ++   ++  +I  N+      + G M  A  +F +M     
Sbjct: 339 LAKWVD----SYATRCSVDLRGAHVTAALIDMNA------KCGNMERAMYLFEKMP---- 384

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
           + +LI++ +++ GL+ +  G++A+  F+ ML   + P     T  L+AC+    +  G  
Sbjct: 385 KRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWH 444

Query: 525 IHGYL-IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
               +  ++ +         +VD+ ++ G + +A  +    P
Sbjct: 445 YFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSVP 486


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  319 bits (818), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 197/682 (28%), Positives = 335/682 (49%), Gaps = 91/682 (13%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED--GVSPDNFVLPNVL 189
           L VA ++F ++  +++ SW AI+         E+ALI F  M+ D  GVS D +VL   L
Sbjct: 44  LRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSVAL 103

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV 249
           KACG    + +G ++H Y  K      VFV S+L+DMY + G ++++ +VF  M  RN V
Sbjct: 104 KACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFRNSV 163

Query: 250 AWNSMIVGYVQNGLNEEAIRVFYEMT-LEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
            W + I G V  GL+ E +R F +M+  + +     +    L A A+L  +  G++ H  
Sbjct: 164 TWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREIHTH 223

Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVV 368
            ++ G                                    + W                
Sbjct: 224 VIVKGFA---------------------------------AILW---------------- 234

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
           VA+S+  MY +C  + +  ++F S+  RDVVLW +L+ AY  +G+  +A   F  M+   
Sbjct: 235 VANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQ 294

Query: 429 ISPN---------------IISW--------------------NSVILGFLRNGQMNEAK 453
           +SPN                + W                    NS++  +    +++ A 
Sbjct: 295 VSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDSAS 354

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +F  M+      ++I+W+T+I G +Q + G E   +F  M + G +P+   +   LS  
Sbjct: 355 VLFQGMRC----RDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLSVS 410

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
             +A L  GR +H   +   L     I ++L++MY+KCG+I +A +VF+     ++    
Sbjct: 411 GIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLT 470

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
           AMI+GYA HG   EA+ LF+   +    PD +TF ++L ACSH+G ++ G + F  M  +
Sbjct: 471 AMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSGQLDLGFQYFNLMQEN 530

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           + ++P+ EH+GC+V+LL R G L++A ++I  MP   D  +  +LL  C +  + E    
Sbjct: 531 YNMRPAKEHYGCMVDLLCRAGRLNDAEKMINEMPWKKDDVVWTTLLRACKEKGDVERGRR 590

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            ++ +L+L+P +    V L+N ++++G W E + VR  MK KG+ K PG S I I +++ 
Sbjct: 591 AAQRILELDPTSFTTLVTLANIHSSTGNWKEAANVRKDMKSKGVIKEPGWSSILIKDQVS 650

Query: 754 VFVACDRSHPKTEEIYATLALL 775
            F +   SHP++E++ + L L+
Sbjct: 651 AFASGSLSHPQSEDVCSILELV 672



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 205/425 (48%), Gaps = 20/425 (4%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L+ C   R +  G++IH  ++  G  FA   +V   L   Y +C  +    RLF  +  +
Sbjct: 205 LKACADLRQVKYGREIHTHVIVKG--FAAILWVANSLATMYTECGEMQDGLRLFESMSER 262

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           +V  W ++I    R+G  EKA+  F+ M+   VSP+     +   AC +L  + +G  +H
Sbjct: 263 DVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLH 322

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
           G V  +G    + V++S++ MY  C  L+ A  +F GM  R++++W+++I GY Q    E
Sbjct: 323 GNVFSLGLGDSLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGE 382

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           E  + F  M   G +PT  ++ S+LS S  +  L++G+Q HA+A+  G+E +  + S++I
Sbjct: 383 ECFKYFSWMRQAGPQPTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALI 442

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDN 385
           N YSK G + +A  VF      DIV+   +I  Y + G+ +       +D++ K  ++  
Sbjct: 443 NMYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGKCE-----EAIDLFEKSLKLS- 496

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFL 444
                      D V + ++L A +  G+     + F  MQ    + P    +  ++    
Sbjct: 497 --------FRPDDVTFISVLTACSHSGQLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLC 548

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
           R G++N+A+ M  +M     + + + WTTL+    +           Q +LE      TT
Sbjct: 549 RAGRLNDAEKMINEMP---WKKDDVVWTTLLRACKEKGDVERGRRAAQRILELDPTSFTT 605

Query: 505 TITCA 509
            +T A
Sbjct: 606 LVTLA 610



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 147/602 (24%), Positives = 260/602 (43%), Gaps = 70/602 (11%)

Query: 23  LKLSQTHLTKLRESD-NSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEI 81
           L++++    K+   D  S+ ++ K Y   +++   E    EA+ L + M+     +  + 
Sbjct: 44  LRVARQVFDKMPRRDIKSWTAIMKGY---VAATKPE----EALILFSAMRVDPLGVSGDT 96

Query: 82  Y--GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
           Y     L+ C    ++  G+ +HA   K   F   + +V + L+  Y +   +D + R+F
Sbjct: 97  YVLSVALKACGQSSNIAYGESLHAYAEKT--FLLSSVFVGSALLDMYMRIGKIDKSCRVF 154

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWV 198
             +  +N  +W A I      GL  + L  F +M     +S D F     LKAC  L  V
Sbjct: 155 AEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQV 214

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
            +GR +H +V+  GF   ++VA+SL  MY +CG++++  ++F+ M  R+VV W S+I  Y
Sbjct: 215 KYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAY 274

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           ++ G  E+A+  F  M    V P   +  S  +A A+L  L  G+Q H      G+    
Sbjct: 275 IRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSL 334

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG--------------- 363
            + +S++  YS    L+ A V+F  M  RDI++W+ +I  Y Q+                
Sbjct: 335 SVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQA 394

Query: 364 -------------------------------------QSDVVVASSIVDMYAKCERIDNA 386
                                                + +  + S++++MY+KC  I  A
Sbjct: 395 GPQPTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEA 454

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
            +VF      D+V    ++  YA+ G+  EA  LF +       P+ +++ SV+     +
Sbjct: 455 SKVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHS 514

Query: 447 GQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
           GQ++     F  MQ +  ++P    +  ++  L +    N+A     EM     K     
Sbjct: 515 GQLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRAGRLNDAEKMINEM---PWKKDDVV 571

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
            T  L AC +   +  GR     ++  D    T +VT L ++++  GN  +A  V     
Sbjct: 572 WTTLLRACKEKGDVERGRRAAQRILELDPTSFTTLVT-LANIHSSTGNWKEAANVRKDMK 630

Query: 566 SK 567
           SK
Sbjct: 631 SK 632



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK--GIDPDSITFTN 609
           G +  A++VFD  P +++  + A++ GY       EAL LF  ++    G+  D+   + 
Sbjct: 42  GKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSV 101

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTMP 667
            L AC  +  +  G  L    +++     S    G  ++++  R G +D++ RV   MP
Sbjct: 102 ALKACGQSSNIAYGESLHA--YAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMP 158


>gi|357147965|ref|XP_003574566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 923

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 227/830 (27%), Positives = 388/830 (46%), Gaps = 96/830 (11%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGC-VYKRDMYTGQQIHAR 104
           S++  IS   +  +   A  +L  M+ R   +       L+  C  ++     G  IHA 
Sbjct: 10  SWYTAISGCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACERWEEGRACGAAIHAL 69

Query: 105 ILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
             K G     N Y+ T L+  Y     +  A RLF  +  +NV SW A++      G  E
Sbjct: 70  TQKAG--LMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGHLE 127

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
           +AL  +  M+ + ++ +      V+  CG+L     G  V  +V+  G    V VA+SLI
Sbjct: 128 EALGYYRRMRRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANSLI 187

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV-EPTR 283
            M G  G + +A K+F  M  R+ V+WN+++  Y   GL  ++ RVF +M   G+     
Sbjct: 188 SMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDA 247

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            ++ S++S  A+ D +  G   H++ +  G+     + ++++N YS  G L DAE +F  
Sbjct: 248 TTLCSLISVCASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWN 307

Query: 344 MVERDIVTWNLLIASYVQSGQS-------------------------------------- 365
           M  RD+++WN +I+SYVQ+G +                                      
Sbjct: 308 MSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALMDG 367

Query: 366 --------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
                         +++V +S++ MY KC  I++A+++F  +   DVV  N L+ +YA L
Sbjct: 368 RMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYAVL 427

Query: 412 GRSGEASRLFYQMQLEGISPNIISW----------------------------------- 436
               +A ++F+ M+   +  N I+                                    
Sbjct: 428 EDGTKAMQVFFWMRRGEVKLNYITIVNILGSFTSSNDLRNYGLPLHAYTIHAGFLSDDYV 487

Query: 437 -NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
            NS+I  + + G +  + ++F ++    +  ++++W  +I+   Q+  G E++  F +M 
Sbjct: 488 SNSLITMYAKCGDLESSNNVFQRI----INRSVVSWNAMIAANVQHGHGEESLKLFMDMR 543

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
             G       +   +S+   +ASL  G  +HG  ++  L   + +V + +DMY KCG + 
Sbjct: 544 HDGNGLDHICLAECMSSSASLASLEEGMQLHGLGLKCGLGNDSHVVNAAMDMYGKCGKMD 603

Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           +  ++      +    +N +ISGYA +G   EA   FK++   G  PD +TF  +L+ACS
Sbjct: 604 EMLKMLPDPAIRPQQCWNTLISGYARYGYFKEAEETFKHMISVGRTPDYVTFVTLLSACS 663

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           HAGLV++G++ +  M S   V P ++H  C+V++L R G   EA + I  MP  P+  I 
Sbjct: 664 HAGLVDKGIDYYNSMSSVFGVSPGIKHCVCIVDILGRLGRFAEAEKFIEDMPVLPNDLIW 723

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
            SLLS+       ++    ++ LL+L+P +   YV LSN YA S RW++V +VR  MK  
Sbjct: 724 RSLLSSSRTHKNLDIGRKAAKRLLELDPFDDSAYVLLSNLYATSARWSDVDRVRSHMKTI 783

Query: 736 GLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
            L K P CSW++  +E+  F   D SH   ++IY  L  + + +R V  V
Sbjct: 784 NLNKIPACSWLKQKKEVSTFGIGDHSHKHADKIYMKLDEILLKLREVGYV 833


>gi|357114751|ref|XP_003559158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 695

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 197/637 (30%), Positives = 321/637 (50%), Gaps = 89/637 (13%)

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           +D   K G L +A  +FD M  +N+VAW S + G  +NG  E A+  F +M   GV P  
Sbjct: 34  LDRLMKSGSLGDALDLFDRMPRKNIVAWTSAVSGLTRNGRPEAAMAAFADMVASGVAPND 93

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343
            +  + L+A A+  AL  G+Q H++AV  G   D+ +GSS++  YS+ G L  A+ VF R
Sbjct: 94  FAFNAALAACADASALRAGEQVHSLAVRAGFAGDSWVGSSLVELYSRCGDLGAAKGVFDR 153

Query: 344 MVERDIVTWNLLIASYVQSGQSDVVV---------------------------------- 369
           M   D+V +  L++++ +SG+ ++ V                                  
Sbjct: 154 MESPDVVGYTSLVSAFCRSGEFELAVDTLHQMLRQGVEPNEHTMASILGSCCPFVLGEQV 213

Query: 370 -----------------ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                            +S+++D Y++    D AK VFN++  ++VV W +++  +   G
Sbjct: 214 HAYMIKAMGLHSQSMYASSALIDFYSRNSEFDMAKAVFNNLHCKNVVTWCSMMQLHIRDG 273

Query: 413 RSGEASRLFYQMQLEGI-SPNIISWN-------SVILG-------FLRN----------- 446
           R  +A ++F  M  EG+  PN  +++       S+ LG         RN           
Sbjct: 274 RPEDALQVFDDMISEGVVEPNEFAFSIALGACGSIALGRQLHSSAIKRNLTSDLRVSNAL 333

Query: 447 ----GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
               G++   +++   ++ +   P++++WTT IS   QN    +AI     +   G+ P+
Sbjct: 334 LSMYGRICHVQELEAVLKDI-ENPDIVSWTTAISANFQNGFSEKAIALLSMLHSRGLMPN 392

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
               + ALS+C D+A L  GR  H   ++    L      +L+++Y+KCG I  AK  FD
Sbjct: 393 DYAFSSALSSCADLALLDQGRQFHCLALKLGCDLKICTGNALINLYSKCGQIAPAKLAFD 452

Query: 563 ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ-KGIDPDSITFTNILNACSHAGLVN 621
           +   +++  +N++I GYA HG A  AL +F  ++  +G +PD  +F  +L AC+HAG+VN
Sbjct: 453 VMDHRDVTSWNSLIHGYAQHGDASMALQVFGEMRSIRGTEPDESSFLGVLAACNHAGMVN 512

Query: 622 EGLELF--VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           EG+ LF  +   S H   PS  H+ CVV+++ R G  D+ALR++  MP  P A I  +LL
Sbjct: 513 EGVALFRAIASHSQHGATPSPSHYACVVDMMGRSGRFDDALRLVEEMPFRPGALIWKTLL 572

Query: 680 STCVKSNETELAEYISEHLLQL----EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
           ++C      E  E  +E L++L    E  +  +YV +S  +A  G W +  +VR  M E 
Sbjct: 573 ASCRLHGNLETGELAAERLMELSEGGEDRDSASYVLMSGIHAMRGEWRDAYRVRRRMDEA 632

Query: 736 GLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           G+RK  GCSW+++  E+H FVA D+SHP +  IY  L
Sbjct: 633 GVRKEAGCSWVEVHNEVHTFVARDKSHPDSASIYQIL 669



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 209/434 (48%), Gaps = 26/434 (5%)

Query: 47  YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARIL 106
           Y   +S+  +  +   AVD L +M  +  +        +L  C        G+Q+HA ++
Sbjct: 162 YTSLVSAFCRSGEFELAVDTLHQMLRQGVEPNEHTMASILGSCC---PFVLGEQVHAYMI 218

Query: 107 KNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKA 166
           K     +++ Y  + L+ FY++    D+A  +F  L  KNV +W +++ L+ R G  E A
Sbjct: 219 KAMGLHSQSMYASSALIDFYSRNSEFDMAKAVFNNLHCKNVVTWCSMMQLHIRDGRPEDA 278

Query: 167 LIGFVEMQEDGV-SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
           L  F +M  +GV  P+ F     L ACG+   +  GR +H   +K      + V+++L+ 
Sbjct: 279 LQVFDDMISEGVVEPNEFAFSIALGACGS---IALGRQLHSSAIKRNLTSDLRVSNALLS 335

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MYG+   ++E   V   +   ++V+W + I    QNG +E+AI +   +   G+ P   +
Sbjct: 336 MYGRICHVQELEAVLKDIENPDIVSWTTAISANFQNGFSEKAIALLSMLHSRGLMPNDYA 395

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
            +S LS+ A+L  LD+G+Q H +A+  G +L    G+++IN YSK G +  A++ F  M 
Sbjct: 396 FSSALSSCADLALLDQGRQFHCLALKLGCDLKICTGNALINLYSKCGQIAPAKLAFDVMD 455

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
            RD+ +WN LI  Y Q G      AS  + ++ +   I   +   +S +         +L
Sbjct: 456 HRDVTSWNSLIHGYAQHGD-----ASMALQVFGEMRSIRGTEPDESSFL--------GVL 502

Query: 406 AAYADLGRSGEASRLFYQM---QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
           AA    G   E   LF  +      G +P+   +  V+    R+G+ ++A  +  +M   
Sbjct: 503 AACNHAGMVNEGVALFRAIASHSQHGATPSPSHYACVVDMMGRSGRFDDALRLVEEMP-- 560

Query: 463 GVQPNLITWTTLIS 476
             +P  + W TL++
Sbjct: 561 -FRPGALIWKTLLA 573



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/487 (24%), Positives = 230/487 (47%), Gaps = 70/487 (14%)

Query: 95  MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII 154
           +  G+Q+H+  ++ G  FA + +V + LV  Y++C  L  A  +F R+   +V  + +++
Sbjct: 109 LRAGEQVHSLAVRAG--FAGDSWVGSSLVELYSRCGDLGAAKGVFDRMESPDVVGYTSLV 166

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLK-VGF 213
              CR G  E A+    +M   GV P+   + ++L +C        G  VH Y++K +G 
Sbjct: 167 SAFCRSGEFELAVDTLHQMLRQGVEPNEHTMASILGSCCPF---VLGEQVHAYMIKAMGL 223

Query: 214 DG-CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
               ++ +S+LID Y +  + + A+ VF+ +  +NVV W SM+  ++++G  E+A++VF 
Sbjct: 224 HSQSMYASSALIDFYSRNSEFDMAKAVFNNLHCKNVVTWCSMMQLHIRDGRPEDALQVFD 283

Query: 273 EMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
           +M  EG VEP   + +  L A  ++ AL  G+Q H+ A+   +  D  + +++++ Y ++
Sbjct: 284 DMISEGVVEPNEFAFSIALGACGSI-AL--GRQLHSSAIKRNLTSDLRVSNALLSMYGRI 340

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA--------------------- 370
             +++ E V   +   DIV+W   I++  Q+G S+  +A                     
Sbjct: 341 CHVQELEAVLKDIENPDIVSWTTAISANFQNGFSEKAIALLSMLHSRGLMPNDYAFSSAL 400

Query: 371 -------------------------------SSIVDMYAKCERIDNAKQVFNSIILRDVV 399
                                          ++++++Y+KC +I  AK  F+ +  RDV 
Sbjct: 401 SSCADLALLDQGRQFHCLALKLGCDLKICTGNALINLYSKCGQIAPAKLAFDVMDHRDVT 460

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQ 458
            WN+L+  YA  G +  A ++F +M+ + G  P+  S+  V+      G +NE   +F  
Sbjct: 461 SWNSLIHGYAQHGDASMALQVFGEMRSIRGTEPDESSFLGVLAACNHAGMVNEGVALFRA 520

Query: 459 MQS---LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           + S    G  P+   +  ++  + ++   ++A+   +EM     +P        L++C  
Sbjct: 521 IASHSQHGATPSPSHYACVVDMMGRSGRFDDALRLVEEM---PFRPGALIWKTLLASCRL 577

Query: 516 VASLRNG 522
             +L  G
Sbjct: 578 HGNLETG 584


>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g53600, mitochondrial; Flags: Precursor
 gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 717

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 204/673 (30%), Positives = 331/673 (49%), Gaps = 112/673 (16%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF----- 271
           +F  +S I  + + G+L+EA  +F  M  R++V+W +MI  Y +NG   +A +VF     
Sbjct: 50  IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109

Query: 272 -----------------------YEMTLEGVEPTRVSVTSILSASANLDALDE------- 301
                                  YE+  +  E   VS  ++++        DE       
Sbjct: 110 RVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 302 ---------------------GKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEV 339
                                GK   AV V  GM +  V+  SS+++ Y K+G + DA  
Sbjct: 170 TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARS 229

Query: 340 VFSRMVERDIVTWNLLIASYVQSG--------------QSDVVVAS-SIVDMYAKCE--- 381
           +F RM ER+++TW  +I  Y ++G              + DV V S ++  M+  C    
Sbjct: 230 LFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFV 289

Query: 382 RIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           R     Q+ + ++ R     D+ L N+L++ Y+ LG  GEA  +F  M+    + + +SW
Sbjct: 290 RYREGSQI-HGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMK----NKDSVSW 344

Query: 437 NSVILGFLRNGQMNEAKDMFLQM-------------------------QSLGVQP--NLI 469
           NS+I G ++  Q++EA ++F +M                         +  G+ P  + I
Sbjct: 345 NSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNI 404

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           TWT +IS    N    EA+ +F +ML+  + P++ T +  LSA   +A L  G  IHG +
Sbjct: 405 TWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRV 464

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
           ++ ++     +  SLV MY KCGN + A ++F       +  YN MISGY+ +G   +AL
Sbjct: 465 VKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKAL 524

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
            LF  L+  G +P+ +TF  +L+AC H G V+ G + F  M S + ++P  +H+ C+V+L
Sbjct: 525 KLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDL 584

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
           L R G LD+A  +I TMPC P + + GSLLS        +LAE  ++ L++LEPD+   Y
Sbjct: 585 LGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPY 644

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           V LS  Y+  G+  +  ++ +I K K ++K+PG SWI +  E+H F+A D S    EEI 
Sbjct: 645 VVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEIG 704

Query: 770 ATLALLGMHVRLV 782
            TL ++   + L+
Sbjct: 705 FTLKMIRKEMELI 717



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 221/479 (46%), Gaps = 47/479 (9%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-V 178
           + +V  Y K   +  A  LF R+  +NV +W A+I    + G  E     F+ M+++G V
Sbjct: 212 SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
             ++  L  + KAC        G  +HG V ++  +  +F+ +SL+ MY K G + EA+ 
Sbjct: 272 KVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKA 331

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VF  M  ++ V+WNS+I G VQ     EA  +F +M  + +    VS T ++   +    
Sbjct: 332 VFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDM----VSWTDMIKGFSG--- 384

Query: 299 LDEGKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
             +G+ +  V +   M E DN+  +++I+ +   G  E+A   F +M+++++   +   +
Sbjct: 385 --KGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFS 442

Query: 358 SYVQSGQS---------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           S + +  S                     D+ V +S+V MY KC   ++A ++F+ I   
Sbjct: 443 SVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEP 502

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           ++V +NT+++ Y+  G   +A +LF  ++  G  PN +++ +++   +  G ++     F
Sbjct: 503 NIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYF 562

Query: 457 LQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC-- 513
             M+ S  ++P    +  ++  L ++   ++A      M     KP +      LSA   
Sbjct: 563 KSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTM---PCKPHSGVWGSLLSASKT 619

Query: 514 ---TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
               D+A L   + I    +  D   P  +++ L   Y+  G      R+ +I  SK +
Sbjct: 620 HLRVDLAELAAKKLIE---LEPDSATPYVVLSQL---YSIIGKNRDCDRIMNIKKSKRI 672



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 17/238 (7%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  +L       D+  G QIH R++K       +  V+  LV  Y KC   + A ++F  
Sbjct: 441 FSSVLSATASLADLIEGLQIHGRVVKMN--IVNDLSVQNSLVSMYCKCGNTNDAYKIFSC 498

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA-----LG 196
           +   N+ S+  +I      G  +KAL  F  ++  G  P+      +L AC       LG
Sbjct: 499 ISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLG 558

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI 255
           W  F      Y ++ G D      + ++D+ G+ G L++A  +   M  + +   W S++
Sbjct: 559 WKYFKSMKSSYNIEPGPDH----YACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLL 614

Query: 256 VG---YVQNGLNEEAIRVFYEMTLEGVEPTRV--SVTSILSASANLDALDEGKQAHAV 308
                +++  L E A +   E+  +   P  V   + SI+  + + D +   K++  +
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRI 672


>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
 gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 200/636 (31%), Positives = 339/636 (53%), Gaps = 52/636 (8%)

Query: 127 AKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
           AK   +D A  LF ++   N  SW AII    +     KA   F EM +  +   N ++ 
Sbjct: 8   AKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIVSWNLMIS 67

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
             + +C  + ++  GR +   + +      +   +++I  Y K G ++EA ++F  M   
Sbjct: 68  GYV-SCHGIRFLKEGRNLFDRMPERD----IVSWNTMISGYAKNGRMDEALRMFKLMPEG 122

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           +VV+WN+++ G++QNG    AI  F  M     E    S+++++S       LDE  +  
Sbjct: 123 DVVSWNAIVTGFLQNGDVARAIEYFERMP----ERDAASLSALVSGLIRNGELDEAARVV 178

Query: 307 AVAVINGMELDNVLGS--SIINFYSKVGLLEDAEVVFSRM-------------VERDIVT 351
                +G   +N+L +  ++I  Y +   +++A  +F ++               R++V+
Sbjct: 179 VRFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVS 238

Query: 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
           WN +I  YV++G                   I  A+++F+ ++ RD + WNT+++ Y ++
Sbjct: 239 WNTMIMCYVKAGN------------------IVFARELFDQMMERDTISWNTMISGYVNM 280

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
               EASRLF +M     +P+I SWN +I G  + G ++   D+F +M     Q NL++W
Sbjct: 281 LDMDEASRLFCEMP----NPDIFSWNKMIAGHAQIGDLDRVNDLFGRMP----QKNLVSW 332

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
            ++I+G  +N     AI  F +M   G KP   T++  LS    +  L+ G  IH  L+ 
Sbjct: 333 NSVITGYEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVDLQLGMQIH-QLVT 391

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALA 590
             +    PI  +L+ MY++CG I +A  +FD +   KE+  +NAMI GYA HG AVEAL 
Sbjct: 392 KTVIPDVPINNALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMIGGYASHGYAVEALE 451

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           +FK ++   + P  ITF ++L+AC+HAGLV EG E+F  M  +  ++PS+EH+  +V+++
Sbjct: 452 VFKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFESMADEFGIEPSVEHYASLVDIM 511

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
           SR G L++AL +I +MP +PD  + G+LLS     N+ E+A   +E L++LEPD+   YV
Sbjct: 512 SRHGQLEQALDLINSMPFEPDKAVWGALLSAAKVHNKIEVARVAAEALIRLEPDSSAPYV 571

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
            L N YA  G+W+  ++VR +M+   ++K    SW+
Sbjct: 572 LLYNMYADVGQWDSAAEVRIMMERSNIKKQAAYSWV 607



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 160/327 (48%), Gaps = 26/327 (7%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  ++ G V   DM    ++    + N D F+ N     K++  +A+   LD  + LF R
Sbjct: 270 WNTMISGYVNMLDMDEASRLFCE-MPNPDIFSWN-----KMIAGHAQIGDLDRVNDLFGR 323

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  KN+ SW ++I    +      A+  F++MQ +G  PD   L +VL     +  +  G
Sbjct: 324 MPQKNLVSWNSVITGYEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVDLQLG 383

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQ 260
             +H  V K      V + ++LI MY +CG + EA  +FD + + + V++WN+MI GY  
Sbjct: 384 MQIHQLVTKTVIPD-VPINNALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMIGGYAS 442

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVINGMELDNV 319
           +G   EA+ VF  M    V PT ++  S+L A A+   ++EG++   ++A   G+E    
Sbjct: 443 HGYAVEALEVFKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFESMADEFGIEPSVE 502

Query: 320 LGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIASYVQSGQSDV--VVASSIV-- 374
             +S+++  S+ G LE A +++ S   E D   W  L+++     + +V  V A +++  
Sbjct: 503 HYASLVDIMSRHGQLEQALDLINSMPFEPDKAVWGALLSAAKVHNKIEVARVAAEALIRL 562

Query: 375 ------------DMYAKCERIDNAKQV 389
                       +MYA   + D+A +V
Sbjct: 563 EPDSSAPYVLLYNMYADVGQWDSAAEV 589



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 144/636 (22%), Positives = 273/636 (42%), Gaps = 112/636 (17%)

Query: 11  NPKFSHTKPQKPLKLSQTHLTKLRESDN-SYESLYKSYFHQISSLSKEKQIREAVDLLTE 69
           N K S+      +  ++    ++ E++  S+ ++ ++Y        K ++I +A  L  E
Sbjct: 1   NKKISNLAKNGRIDEARALFDQMEETNTVSWNAIIRAYV-------KRREIAKARKLFDE 53

Query: 70  MKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129
           M  R+  +   +       C   R +  G+ +  R+ +  D  + N      ++  YAK 
Sbjct: 54  MPQRDI-VSWNLMISGYVSCHGIRFLKEGRNLFDRMPER-DIVSWN-----TMISGYAKN 106

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
             +D A R+F  +   +V SW AI+    + G   +A+  F  M E   +  + ++  ++
Sbjct: 107 GRMDEALRMFKLMPEGDVVSWNAIVTGFLQNGDVARAIEYFERMPERDAASLSALVSGLI 166

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVA-SSLIDMYGKCGDLEEARKVFDGM----- 243
           +  G L      R V  +    G    +  A ++LI  YG+   ++EARK+FD +     
Sbjct: 167 R-NGELD--EAARVVVRFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDG 223

Query: 244 --------IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
                     RNVV+WN+MI+ YV+ G    A  +F +M    +E   +S  +++S   N
Sbjct: 224 KGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELFDQM----MERDTISWNTMISGYVN 279

Query: 296 LDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
           +  +DE  +     +   M   ++   + +I  ++++G L+    +F RM ++++V+WN 
Sbjct: 280 MLDMDEASR-----LFCEMPNPDIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKNLVSWNS 334

Query: 355 LIASY-----------------VQSGQSDVVVASSIVDMYAKCERID---NAKQVFNSII 394
           +I  Y                 V+  + D    SS++ + A    +       Q+    +
Sbjct: 335 VITGYEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVDLQLGMQIHQLVTKTV 394

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454
           + DV + N L+  Y+  G   EA  +F +++L+     +ISWN++I G+  +G   EA +
Sbjct: 395 IPDVPINNALITMYSRCGAIIEAGTIFDEVKLQ---KEVISWNAMIGGYASHGYAVEALE 451

Query: 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTITCALSAC 513
           +F  M+S  V+P  IT+ +++          E    F+ M  E GI+PS           
Sbjct: 452 VFKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFESMADEFGIEPS----------- 500

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVY 572
                           + H          SLVD+ ++ G + QA  + +  P   +  V+
Sbjct: 501 ----------------VEH--------YASLVDIMSRHGQLEQALDLINSMPFEPDKAVW 536

Query: 573 NAMISGYAMHG----LAVEALALFKNLQQKGIDPDS 604
            A++S   +H       V A AL +      ++PDS
Sbjct: 537 GALLSAAKVHNKIEVARVAAEALIR------LEPDS 566



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 109/232 (46%), Gaps = 14/232 (6%)

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           N  I    +NG+++EA+ +F QM+    + N ++W  +I    +     +A   F EM +
Sbjct: 1   NKKISNLAKNGRIDEARALFDQME----ETNTVSWNAIIRAYVKRREIAKARKLFDEMPQ 56

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
             I      I+  +S C  +  L+ GR +   +   D+     +++     YAK G + +
Sbjct: 57  RDIVSWNLMISGYVS-CHGIRFLKEGRNLFDRMPERDIVSWNTMISG----YAKNGRMDE 111

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A R+F + P  ++  +NA+++G+  +G    A+  F+ + ++    D+ + + +++    
Sbjct: 112 ALRMFKLMPEGDVVSWNAIVTGFLQNGDVARAIEYFERMPER----DAASLSALVSGLIR 167

Query: 617 AGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP 667
            G ++E   + V    D   K + ++ +  ++    R   +DEA ++   +P
Sbjct: 168 NGELDEAARVVVRFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIP 219


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 195/579 (33%), Positives = 307/579 (53%), Gaps = 74/579 (12%)

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
           +R+  +W   +    ++    EAI  + EMT+ G  P   +  ++L A + L  L  G+Q
Sbjct: 54  SRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 305 AHAVAVINGMELDNV-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
            HA AV  G    +V + ++++N Y K G + D              T N L+A      
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGD-----------KTFTNNALMA------ 156

Query: 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
                       MYAK  R+D++K +F S + RD+V WNT++++++   R  EA   F  
Sbjct: 157 ------------MYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRL 204

Query: 424 MQLEGISPNIISWNSVILG----------------FLRNGQMNEAK-------DMFL--- 457
           M LEG+  + ++  SV+                   LRN  + E         DM+    
Sbjct: 205 MVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCR 264

Query: 458 QMQS--------LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE-TGIKPSTTTITC 508
           Q++S        LG +  L  W  +ISG  +N    +A++ F EM++  G+ P+TTT+  
Sbjct: 265 QVESGRRVFDHILGRRIEL--WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMAS 322

Query: 509 ALSACT-DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
            + AC   +A++  G+ IH Y IR+ L     + ++LVDMYAKCG ++ ++RVF+  P+K
Sbjct: 323 VMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK 382

Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKG-----IDPDSITFTNILNACSHAGLVNE 622
            +  +N +I    MHG   EAL LFKN+  +        P+ +TF  +  ACSH+GL++E
Sbjct: 383 NVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISE 442

Query: 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSLLST 681
           GL LF  M  DH V+P+ +H+ CVV+LL R G L+EA  ++ TMP + D      SLL  
Sbjct: 443 GLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGA 502

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C      EL E  +++LL LEP+   +YV LSN Y+++G WN+  +VR  M++ G++K P
Sbjct: 503 CRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEP 562

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           GCSWI+  +E+H F+A D SHP++E+++  L  L   +R
Sbjct: 563 GCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMR 601



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 133/480 (27%), Positives = 228/480 (47%), Gaps = 39/480 (8%)

Query: 5   TFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAV 64
           +  T P P       QKP     T  T  + +  S  +   S+   + S ++    REA+
Sbjct: 25  SLQTQPPPSI-----QKPTASPLTSKTPPKPTSPSRST--ASWVDALRSRTRSNDFREAI 77

Query: 65  DLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG-------------DF 111
               EM     +     +  +L+     +D+ TG+QIHA  +K G             + 
Sbjct: 78  STYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNM 137

Query: 112 FAR------NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           + +        +    L+  YAK   +D +  LF     +++ SW  +I    +     +
Sbjct: 138 YGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSE 197

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG-FDGCVFVASSLI 224
           AL  F  M  +GV  D   + +VL AC  L  +  G+ +H YVL+        FV S+L+
Sbjct: 198 ALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALV 257

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTR 283
           DMY  C  +E  R+VFD ++ R +  WN+MI GY +NGL+E+A+ +F EM  + G+ P  
Sbjct: 258 DMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNT 317

Query: 284 VSVTSILSASAN-LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
            ++ S++ A  + L A+ +GK+ HA A+ N +  D  +GS++++ Y+K G L  +  VF+
Sbjct: 318 TTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFN 377

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            M  ++++TWN+LI +    G+ +  +     +M A+  R   AK         + V + 
Sbjct: 378 EMPNKNVITWNVLIMACGMHGKGEEAL-ELFKNMVAEAGRGGEAKP--------NEVTFI 428

Query: 403 TLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
           T+ AA +  G   E   LFY+M+ + G+ P    +  V+    R GQ+ EA ++   M +
Sbjct: 429 TVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPA 488



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 125/519 (24%), Positives = 243/519 (46%), Gaps = 72/519 (13%)

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++  SW   +    R     +A+  ++EM   G  PDNF  P VLKA   L  +  G  +
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 205 HGYVLKVGF-DGCVFVASSLIDMYGKCGDL--------------------EEARKVFDGM 243
           H   +K G+    V VA++L++MYGKCG +                    ++++ +F+  
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESF 174

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
           + R++V+WN+MI  + Q+    EA+  F  M LEGVE   V++ S+L A ++L+ LD GK
Sbjct: 175 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 234

Query: 304 QAHAVAVINGMELDN-VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
           + HA  + N   ++N  +GS++++ Y     +E    VF  ++ R I  WN +I+ Y ++
Sbjct: 235 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARN 294

Query: 363 GQSDVVV---------------ASSIVDMYAKC----ERIDNAKQV----FNSIILRDVV 399
           G  +  +                +++  +   C      I   K++      +++  D+ 
Sbjct: 295 GLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDIT 354

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           + + L+  YA  G    + R+F +M     + N+I+WN +I+    +G+  EA ++F  M
Sbjct: 355 VGSALVDMYAKCGCLNLSRRVFNEMP----NKNVITWNVLIMACGMHGKGEEALELFKNM 410

Query: 460 QSLG-----VQPNLITWTTLISGLTQNSCGNEAI-LFFQEMLETGIKPSTTTITCALSAC 513
            +        +PN +T+ T+ +  + +   +E + LF++   + G++P++    C +   
Sbjct: 411 VAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLL 470

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ--------AKRVFDISP 565
                 R G+    Y + + +      V +   +   C  IHQ        AK +  + P
Sbjct: 471 G-----RAGQLEEAYELVNTMPAEFDKVGAWSSLLGAC-RIHQNVELGEVAAKNLLHLEP 524

Query: 566 SKELPVYNAMISG-YAMHGLAVEALALFKNLQQKGIDPD 603
           +  +  +  ++S  Y+  GL  +A+ + KN++Q G+  +
Sbjct: 525 N--VASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKE 561


>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 547

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 168/504 (33%), Positives = 275/504 (54%), Gaps = 54/504 (10%)

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
           AL++GK  HA  +++G+   N   S +I+FY++   L     +F R+ + +     +LI 
Sbjct: 44  ALNQGKHLHARLIVSGLASSNNFASKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIG 103

Query: 358 SYVQSG----------------------------------------------------QS 365
           +Y + G                                                    +S
Sbjct: 104 AYSRHGFYQDVLDVFSEMQNERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHLFES 163

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           DVVV ++++DMY++C  ++ A++VF+ +  +D+V  N ++  YA  G + E   L  QMQ
Sbjct: 164 DVVVNTALIDMYSRCRHVEKARKVFDGMQEKDLVALNAMVLGYAQNGFAKEGFLLVEQMQ 223

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
           +  I PN+++WN++I GF + G     +++F  M   G +P++I+WT++IS   QNS   
Sbjct: 224 MLDIKPNLVTWNTLISGFAQAGDKVMVQELFGLMSMHGFEPDVISWTSVISRFVQNSHNE 283

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
            A   F++ML+ G  P++ TI+  L AC  +A++R+GR +HGY     +     + +++V
Sbjct: 284 AAFAAFKQMLQHGAYPNSATISSLLPACASLANVRHGRELHGYAFAIGVEEDIYVRSAIV 343

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ-KGIDPDS 604
           DMY+KCG I +A+ +F   P +    +N+MI GYA HG   EA+ LF  +++ +    D 
Sbjct: 344 DMYSKCGLISEARMLFSKMPERHTVTWNSMIFGYANHGYCDEAIELFNQMEKTEAKKIDH 403

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
           ++FT +L ACSH  LV  G  LF+ M   +++ P +EH+ C+++LL R G L EA  +I 
Sbjct: 404 LSFTAVLTACSHGRLVELGQSLFLLMHEKYKIVPRLEHYACMIDLLGRAGKLSEAYDMIK 463

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
           TMP +PD  + G+LL  C +  E +LAE  + HL +LEP N GN + LSN YA +G W  
Sbjct: 464 TMPVEPDLFVWGALLGACRQHGEIDLAEIAARHLAELEPRNAGNNMLLSNLYADAGSWEN 523

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQI 748
           V++++ + K K LRK    SWIQ+
Sbjct: 524 VAKLK-MGKRKRLRKFSAYSWIQL 546



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 230/484 (47%), Gaps = 96/484 (19%)

Query: 73  RNFQIGP-EIYGELLQGCVYKRD--MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129
           R+FQ      + EL++   Y RD  +  G+ +HAR++ +G   A +    +KL+ FY + 
Sbjct: 22  RSFQSSSLHTFDELIK--TYTRDHALNQGKHLHARLIVSG--LASSNNFASKLISFYTET 77

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
             L +  +LF R+   N +    +IG   R G  +  L  F EMQ + + P+ FV+P+VL
Sbjct: 78  RQLSIVRKLFDRIPKPNFYQRTVLIGAYSRHGFYQDVLDVFSEMQNERLRPNKFVIPSVL 137

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV 249
           +ACG +  +  G+ +H  +L+  F+  V V ++LIDMY +C  +E+ARKVFDGM  +++V
Sbjct: 138 RACGHVFDLQTGKILHSVILRHLFESDVVVNTALIDMYSRCRHVEKARKVFDGMQEKDLV 197

Query: 250 AWNSMIVGYVQNGLNEEAI-----------------------------------RVFYEM 274
           A N+M++GY QNG  +E                                      +F  M
Sbjct: 198 ALNAMVLGYAQNGFAKEGFLLVEQMQMLDIKPNLVTWNTLISGFAQAGDKVMVQELFGLM 257

Query: 275 TLEGVEPTRVSVTSILSA----SANLDALDEGKQ--------------------AHAVAV 310
           ++ G EP  +S TS++S     S N  A    KQ                    A    V
Sbjct: 258 SMHGFEPDVISWTSVISRFVQNSHNEAAFAAFKQMLQHGAYPNSATISSLLPACASLANV 317

Query: 311 INGMEL-----------DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
            +G EL           D  + S+I++ YSK GL+ +A ++FS+M ER  VTWN +I  Y
Sbjct: 318 RHGRELHGYAFAIGVEEDIYVRSAIVDMYSKCGLISEARMLFSKMPERHTVTWNSMIFGY 377

Query: 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
              G  D       ++++ + E+ + AK++       D + +  +L A +  GR  E  +
Sbjct: 378 ANHGYCD-----EAIELFNQMEKTE-AKKI-------DHLSFTAVLTACSH-GRLVELGQ 423

Query: 420 LFYQMQLE--GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
             + +  E   I P +  +  +I    R G+++EA DM   ++++ V+P+L  W  L+  
Sbjct: 424 SLFLLMHEKYKIVPRLEHYACMIDLLGRAGKLSEAYDM---IKTMPVEPDLFVWGALLGA 480

Query: 478 LTQN 481
             Q+
Sbjct: 481 CRQH 484


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  319 bits (817), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 220/802 (27%), Positives = 370/802 (46%), Gaps = 108/802 (13%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALD--VASRLF 139
           +G LL+ C        G  +    L +   +A N  V   L+  Y  C      +A R+F
Sbjct: 168 FGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVF 227

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG----VSPDNFVLPNVLKACGAL 195
               ++++ +W A++ +  + G        F +MQ       + P      +++ A    
Sbjct: 228 DGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLS 287

Query: 196 GWVG-FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSM 254
                    V  +VLK G    ++V S+L+  + + G  +EA+ +F  +  +N V  N +
Sbjct: 288 SGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGL 347

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG----KQAHAVAV 310
           IVG V+   +EEA+++F   T   V+    +   +LSA A     +EG    +  H   +
Sbjct: 348 IVGLVRQDFSEEAVKIFVG-TRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHML 406

Query: 311 INGM-ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---- 365
             G+ +L   + + ++N Y+K G +E A  +F  M   D ++WN +I++  Q+G      
Sbjct: 407 RTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAV 466

Query: 366 ------------------------------------------------DVVVASSIVDMY 377
                                                           D  V++ +V MY
Sbjct: 467 MHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMY 526

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS-GEASRLFYQMQLEGISPNIISW 436
            +C  + +  +VFNS+   D V WNT++   A       E  ++F  M   G+ PN +++
Sbjct: 527 GECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTF 586

Query: 437 -----------------------------------NSVILGFLRNGQMNEAKDMFLQMQS 461
                                              N++I  + ++G M   + +F  M  
Sbjct: 587 INLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSD 646

Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521
              + + I+W ++ISG   N    EA+     M+ +G      T +  L+AC  VA+L  
Sbjct: 647 ---RRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALER 703

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G  +H + IR  L     + ++LVDMY+KCG +  A ++F+    +    +N+MISGYA 
Sbjct: 704 GMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYAR 763

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641
           HGL  +A+ +F+ + +    PD +TF ++L+ACSHAGLV  GLE F  M  DH + P +E
Sbjct: 764 HGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYF-EMMPDHGILPQIE 822

Query: 642 HFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE---TELAEYISEHL 698
           H+ CV++LL R G +D+    I  MP +P+A I  ++L  C +S +    +L    S  L
Sbjct: 823 HYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVL 882

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVAC 758
           L++EP NP NYV  SN +AA+G W + ++ R  M++   +K  G SW+ + + +H F+A 
Sbjct: 883 LEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAG 942

Query: 759 DRSHPKTEEIYATLALLGMHVR 780
           DRSHP T+EIY  L  L  ++R
Sbjct: 943 DRSHPNTKEIYEKLNFLIQNIR 964



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 157/681 (23%), Positives = 296/681 (43%), Gaps = 118/681 (17%)

Query: 94  DMYTGQQIHARILKNG---DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSW 150
           D  + + +H  ++K G   D F  N  V +     YAK   L  AS++F  +  +N  SW
Sbjct: 76  DANSPENLHVELIKRGLNHDLFLCNHLVNS-----YAKGARLAAASQVFDEMPERNAVSW 130

Query: 151 AAIIGLNCRVGLSEKALIGFVEMQED---GVSPDNFVLPNVLKAC--GALGWVGFGRAVH 205
             ++      G++E+A   F  M  +   G  P +F    +L+AC  G    +GF   VH
Sbjct: 131 TCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVH 190

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKC--GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           G V K  +     V ++LI MYG C  G    A++VFDG   R+++ WN+++  Y + G 
Sbjct: 191 GLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGD 250

Query: 264 NEEAIRVFYEM----TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI-NGMELDN 318
                 +F +M    +   + PT  +  S+++A++             V V+ +G   D 
Sbjct: 251 VASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDL 310

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------ 366
            +GS++++ +++ GL ++A+ +F  + +++ VT N LI   V+   S+            
Sbjct: 311 YVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNT 370

Query: 367 --------VVVASSIVD------------------------------------MYAKCER 382
                   VV+ S++ +                                    MYAKC  
Sbjct: 371 VDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGA 430

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP----------- 431
           I++A ++F  +   D + WNT+++A    G   EA   +  M+   ISP           
Sbjct: 431 IESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSS 490

Query: 432 ---------------NIISW---------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
                          + + W         N ++  +   G M++   +F  M     + +
Sbjct: 491 CAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSM----AEHD 546

Query: 468 LITWTTLISGLTQNSCG-NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
            ++W T++  +  +    +E +  F  M+  G+ P+  T    L+A + ++ L  G+ +H
Sbjct: 547 EVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVH 606

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGLA 585
             +++H +     +  +L+  YAK G++   + +F ++S  ++   +N+MISGY  +G  
Sbjct: 607 AAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNL 666

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
            EA+     +   G   D  TF+ ILNAC+    +  G+EL       H ++  +     
Sbjct: 667 QEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSH-LESDVVVESA 725

Query: 646 VVNLLSRCGNLDEALRVILTM 666
           +V++ S+CG +D A ++  +M
Sbjct: 726 LVDMYSKCGRVDYASKLFNSM 746


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  319 bits (817), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 198/678 (29%), Positives = 331/678 (48%), Gaps = 93/678 (13%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y+    L  A  LF     +N  +W  ++  +   G +  AL  F  M  +GV PD   +
Sbjct: 84  YSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTV 143

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
             VL   G         ++H + +K G D  VFV ++L+D Y K G L  AR+VF  M  
Sbjct: 144 TTVLNLPGCTV-----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHD 198

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           ++ V +N+M++G  + GL+ +A+++F  M   G+  T  + +SIL+ +A +  L  G Q 
Sbjct: 199 KDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQV 258

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           HA+ + +         +S++N                                       
Sbjct: 259 HALVLRS---------TSVLN--------------------------------------- 270

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
            V V +S++D Y+KC+ +D+ +++F+ +  RD V +N ++AAYA    +    RLF +MQ
Sbjct: 271 -VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 329

Query: 426 LEGISPNIISW-----------------------------------NSVILGFLRNGQMN 450
             G    ++ +                                   N++I  + + G ++
Sbjct: 330 KLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLD 389

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
            AK  F    S   + + I+WT LI+G  QN    EA+  F +M   G++P   T +  +
Sbjct: 390 AAKSNF----SNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSII 445

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
            A + +A +  GR +H YLIR          + LVDMYAKCG + +A R FD  P +   
Sbjct: 446 KASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSI 505

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
            +NA+IS YA +G A  A+ +F+ +   G +PDS+TF ++L ACSH GL +E ++ F  M
Sbjct: 506 SWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLM 565

Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETEL 690
              + + P  EH+ CV++ L R G   +  ++++ MP   D  I  S+L +C      EL
Sbjct: 566 KHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQEL 625

Query: 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGE 750
           A   ++ L  +EP +   YV LSN YA +G+W + + V+ IM+++G+RK  G SW++I +
Sbjct: 626 ARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQ 685

Query: 751 ELHVFVACDRSHPKTEEI 768
           +++ F + D + P  +EI
Sbjct: 686 KIYSFASNDLTSPMIDEI 703



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 228/467 (48%), Gaps = 40/467 (8%)

Query: 55  SKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFAR 114
           SKE    +A+ L   M+          +  +L        +  G Q+HA +L++      
Sbjct: 212 SKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL-- 269

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ 174
           N +V   L+ FY+KCD LD   RLF  +  ++  S+  II        +   L  F EMQ
Sbjct: 270 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 329

Query: 175 EDGVSPDNFVLP--NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           + G   D  VLP   +L   G+L  V  G+ +H  ++ +G      + ++LIDMY KCG 
Sbjct: 330 KLGF--DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGM 387

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L+ A+  F     ++ ++W ++I GYVQNG +EEA+++F +M   G+ P R + +SI+ A
Sbjct: 388 LDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA 447

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
           S++L  +  G+Q H+  + +G +     GS +++ Y+K G L++A   F  M ER+ ++W
Sbjct: 448 SSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISW 507

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL----RDVVLWNTLLAAY 408
           N +I++Y   G++                   NA ++F  ++      D V + ++LAA 
Sbjct: 508 NAVISAYAHYGEA------------------KNAIKMFEGMLHCGFNPDSVTFLSVLAAC 549

Query: 409 ADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
           +  G + E  + F+ M+ +  ISP    +  VI    R G  ++ + M ++M     + +
Sbjct: 550 SHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMP---FKAD 606

Query: 468 LITWTTLISGLTQNSC---GNEAILFFQEMLETGIKPSTTTITCALS 511
            I WT+++     +SC   GN+ +         G++P+  T    LS
Sbjct: 607 PIIWTSIL-----HSCRIHGNQELARVAADKLFGMEPTDATPYVILS 648



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 134/495 (27%), Positives = 223/495 (45%), Gaps = 59/495 (11%)

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED 176
           +V   L+  Y K   L  A R+F  +  K+  ++ A++    + GL  +AL  F  M+  
Sbjct: 171 FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA 230

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G+   +F   ++L     +  +  G  VH  VL+      VFV +SL+D Y KC  L++ 
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDM 290

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           R++FD M  R+ V++N +I  Y  N      +R+F EM   G +   +   ++LS + +L
Sbjct: 291 RRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL 350

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
             +  GKQ HA  V+ G+  +++LG+++I+ YSK G+L+ A+  FS   E+  ++W  LI
Sbjct: 351 PDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALI 410

Query: 357 ASYVQSGQ-----------------------SDVVVASS--------------------- 372
             YVQ+GQ                       S ++ ASS                     
Sbjct: 411 TGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYK 470

Query: 373 --------IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
                   +VDMYAKC  +D A + F+ +  R+ + WN +++AYA  G +  A ++F  M
Sbjct: 471 SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGM 530

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWTTLISGLTQNSC 483
              G +P+ +++ SV+     NG  +E    F L      + P    +  +I  L +  C
Sbjct: 531 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGC 590

Query: 484 GNEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
            ++     Q+ML E   K      T  L +C    +    R     L   +    TP V 
Sbjct: 591 FSQV----QKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVI 646

Query: 543 SLVDMYAKCGNIHQA 557
            L ++YA+ G    A
Sbjct: 647 -LSNIYARAGQWEDA 660



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/471 (21%), Positives = 191/471 (40%), Gaps = 109/471 (23%)

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
           G L  A  +F +M  ++I + NL++++Y  SG                   +  A+ +F 
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGD------------------LPAAQHLFL 98

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS---------------- 435
           S   R+   W  ++ A+A  GR+ +A  LF  M  EG+ P+ ++                
Sbjct: 99  SSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLH 158

Query: 436 --------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
                          N+++  + ++G +  A+ +FL+M       + +T+  ++ G ++ 
Sbjct: 159 PFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMH----DKDAVTYNAMMMGCSKE 214

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541
               +A+  F  M   GI  +  T +  L+    +A L  G  +H  ++R    L   + 
Sbjct: 215 GLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVN 274

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
            SL+D Y+KC  +   +R+FD  P ++   YN +I+ YA +  A   L LF+ +Q+ G D
Sbjct: 275 NSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFD 334

Query: 602 PDSITFTNILNACS-----HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
              + +  +L+        H G       + +G+ S+  +  ++      +++ S+CG L
Sbjct: 335 RQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNAL------IDMYSKCGML 388

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           D A                        KSN +  +E            +  ++ AL   Y
Sbjct: 389 DAA------------------------KSNFSNRSE-----------KSAISWTALITGY 413

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGC-----------SWIQIGEELHVFV 756
             +G+  E  Q+   M+  GLR +              + I +G +LH ++
Sbjct: 414 VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYL 464



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 27/200 (13%)

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
            M++TG    T  +   L +      L   RA+   +   ++     I+++    Y+  G
Sbjct: 33  RMVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSA----YSSSG 88

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           ++  A+ +F  SP +    +  M+  +A  G   +AL+LF+ +  +G+ PD +T T +LN
Sbjct: 89  DLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN 148

Query: 613 --ACS----HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC--GNLDEALRVIL 664
              C+    H   +  GL+  V              F C   L + C  G L  A RV L
Sbjct: 149 LPGCTVPSLHPFAIKFGLDTHV--------------FVCNTLLDAYCKHGLLAAARRVFL 194

Query: 665 TMPCDPDAHIIGSLLSTCVK 684
            M  D DA    +++  C K
Sbjct: 195 EMH-DKDAVTYNAMMMGCSK 213


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  319 bits (817), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 198/658 (30%), Positives = 331/658 (50%), Gaps = 96/658 (14%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
            H Y +K G    ++V++ ++D Y K G L  A  +FD M  R+ V+WN+MI GY   G 
Sbjct: 22  THCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGK 81

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
            E+A  +F  M   G +    S + +L   A++   D G+Q H + +  G E +  +GSS
Sbjct: 82  LEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSS 141

Query: 324 IINFYSKVGLLEDAEVVFSRMVE----------------RDIVT--W------------- 352
           +++ Y+K   +EDA   F  + E                RDI T  W             
Sbjct: 142 LVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTM 201

Query: 353 ------------------NLLI---ASYVQSG-QSDVVVASSIVDMYAKCERIDNAKQVF 390
                             NLL    A  ++ G Q ++ + ++++  YA C  + +AK+VF
Sbjct: 202 DAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVF 261

Query: 391 NSII-LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW------------- 436
           + +   +D++ WN+++A ++       A  LF QMQ   +  +I ++             
Sbjct: 262 DGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQ 321

Query: 437 ----------------------NSVILGFLR--NGQMNEAKDMFLQMQSLGVQPNLITWT 472
                                 N++I  +++   G M +A  +F  ++S     +LI+W 
Sbjct: 322 IFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKS----KDLISWN 377

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
           ++I+G  Q     +A+ FF  +  + IK      +  L +C+D+A+L+ G+ IH    + 
Sbjct: 378 SIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKS 437

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISGYAMHGLAVEALAL 591
                  +++SL+ MY+KCG I  A++ F    SK   V +NAMI GYA HGL   +L L
Sbjct: 438 GFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDL 497

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  +  + +  D +TFT IL ACSH GL+ EGLEL   M   ++++P MEH+   V+LL 
Sbjct: 498 FSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLG 557

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G +++A  +I +MP +PD  ++ + L  C    E E+A  ++ HLL++EP++   YV+
Sbjct: 558 RAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVS 617

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           LS+ Y+   +W E + V+ +MKE+G++K PG SWI+I  ++  F A DRS+P  ++IY
Sbjct: 618 LSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIY 675



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 132/540 (24%), Positives = 247/540 (45%), Gaps = 42/540 (7%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  +   ++ +A  L T MK     +    +  LL+G    +    G+Q+H  +
Sbjct: 68  SWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLV 127

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K G  +  N YV + LV  YAKC+ ++ A   F  +   N  SW A+I    +V   + 
Sbjct: 128 IKGG--YECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKT 185

Query: 166 A--LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
           A  L+G +EM+   V+ D      +L       +    + VH  VLK+G    + + +++
Sbjct: 186 AFWLLGLMEMKA-AVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAM 244

Query: 224 IDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           I  Y  CG + +A++VFDG+  ++++++WNSMI G+ ++ L E A  +F +M    VE  
Sbjct: 245 ISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETD 304

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK--VGLLEDAEVV 340
             + T +LSA +  +    GK  H + +  G+E      +++I+ Y +   G +EDA  +
Sbjct: 305 IYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSL 364

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  +  +D+++WN +I  + Q G S+              + +     + +S I  D   
Sbjct: 365 FESLKSKDLISWNSIITGFAQKGLSE--------------DAVKFFSYLRSSEIKVDDYA 410

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           ++ LL + +DL       ++       G   N    +S+I+ + + G +  A+  F Q+ 
Sbjct: 411 FSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQIS 470

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
           S   + + + W  +I G  Q+  G  ++  F +M    +K    T T  L+AC+    ++
Sbjct: 471 S---KHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQ 527

Query: 521 NGRAIHGYLIRHDLCLPTPI---------VTSLVDMYAKCGNIHQAKRVFDISPSKELPV 571
            G  +        L L  P+           + VD+  + G +++AK + +  P    P+
Sbjct: 528 EGLEL--------LNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPM 579


>gi|15238469|ref|NP_200768.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170472|sp|Q9FGR2.1|PP436_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g59600
 gi|10177776|dbj|BAB11040.1| unnamed protein product [Arabidopsis thaliana]
 gi|71143062|gb|AAZ23922.1| At5g59600 [Arabidopsis thaliana]
 gi|332009827|gb|AED97210.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 534

 Score =  319 bits (817), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 187/550 (34%), Positives = 305/550 (55%), Gaps = 55/550 (10%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           GR +H +++  G      +A+ L+  Y +CG + +ARKVFD M  R++     MI    +
Sbjct: 35  GRVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLDARKVFDEMPKRDISGCVVMIGACAR 94

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           NG  +E++  F EM  +G++     V S+L AS NL   + GK  H +            
Sbjct: 95  NGYYQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCL------------ 142

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
              ++ F                                  S +SD  + SS++DMY+K 
Sbjct: 143 ---VLKF----------------------------------SYESDAFIVSSLIDMYSKF 165

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
             + NA++VF+ +  +D+V++N +++ YA+  ++ EA  L   M+L GI P++I+WN++I
Sbjct: 166 GEVGNARKVFSDLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALI 225

Query: 441 LGF--LRNGQMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
            GF  +RN    E     L++  L G +P++++WT++ISGL  N    +A   F++ML  
Sbjct: 226 SGFSHMRN---EEKVSEILELMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTH 282

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           G+ P++ TI   L ACT +A +++G+ IHGY +   L     + ++L+DMY KCG I +A
Sbjct: 283 GLYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEA 342

Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
             +F  +P K    +N+MI  YA HGLA +A+ LF  ++  G   D +TFT IL ACSHA
Sbjct: 343 MILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHA 402

Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
           GL + G  LF+ M + +++ P +EH+ C+V+LL R G L EA  +I  M  +PD  + G+
Sbjct: 403 GLTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGA 462

Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           LL+ C      ELA   ++HL +LEP+N GN + L++ YA +G W  V +++ ++K+K  
Sbjct: 463 LLAACRNHGNMELARIAAKHLAELEPENSGNGLLLTSLYANAGSWESVVRMKKMIKKKRF 522

Query: 738 RKNPGCSWIQ 747
           R+  G SW++
Sbjct: 523 RRFLGSSWVE 532



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 233/473 (49%), Gaps = 29/473 (6%)

Query: 73  RNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL 132
           R   IG   Y EL++     R    G+ +HA ++ +G   AR   +  KLV FY +C  +
Sbjct: 12  RLLSIGS--YVELIEANGRDRLFCRGRVLHAHLVTSG--IARLTRIAAKLVTFYVECGKV 67

Query: 133 DVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC 192
             A ++F  +  +++     +IG   R G  +++L  F EM +DG+  D F++P++LKA 
Sbjct: 68  LDARKVFDEMPKRDISGCVVMIGACARNGYYQESLDFFREMYKDGLKLDAFIVPSLLKAS 127

Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
             L    FG+ +H  VLK  ++   F+ SSLIDMY K G++  ARKVF  +  +++V +N
Sbjct: 128 RNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKVFSDLGEQDLVVFN 187

Query: 253 SMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN 312
           +MI GY  N   +EA+ +  +M L G++P  ++  +++S  +++   ++  +   +  ++
Sbjct: 188 AMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNEEKVSEILELMCLD 247

Query: 313 GMELDNVLGSSII-----NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA----SYVQSG 363
           G + D V  +SII     NF ++       +++   +         LL A    +Y++ G
Sbjct: 248 GYKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATIITLLPACTTLAYMKHG 307

Query: 364 QS----DVV--------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
           +      VV        V S+++DMY KC  I  A  +F     +  V +N+++  YA+ 
Sbjct: 308 KEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANH 367

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLIT 470
           G + +A  LF QM+  G   + +++ +++      G  +  +++FL MQ+   + P L  
Sbjct: 368 GLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIVPRLEH 427

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
           +  ++  L +     EA    + M    ++P        L+AC +  ++   R
Sbjct: 428 YACMVDLLGRAGKLVEAYEMIKAM---RMEPDLFVWGALLAACRNHGNMELAR 477



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 108/234 (46%), Gaps = 16/234 (6%)

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           GR +H +L+   +   T I   LV  Y +CG +  A++VFD  P +++     MI   A 
Sbjct: 35  GRVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLDARKVFDEMPKRDISGCVVMIGACAR 94

Query: 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA-----GLVNEGLELFVGMFSDHQV 636
           +G   E+L  F+ + + G+  D+    ++L A  +      G +   L L     SD  +
Sbjct: 95  NGYYQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFI 154

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
             S+      +++ S+ G +  A +V   +  + D  +  +++S    +++ + A  + +
Sbjct: 155 VSSL------IDMYSKFGEVGNARKVFSDLG-EQDLVVFNAMISGYANNSQADEALNLVK 207

Query: 697 --HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
              LL ++PD    + AL + ++      +VS++ ++M   G + +   SW  I
Sbjct: 208 DMKLLGIKPDVI-TWNALISGFSHMRNEEKVSEILELMCLDGYKPDV-VSWTSI 259


>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 836

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 228/792 (28%), Positives = 374/792 (47%), Gaps = 107/792 (13%)

Query: 43  LYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGEL--LQGCVYKRDMYTGQQ 100
           L+ S     +     K+  E    ++E K     I P+ Y     L+ C    D   G +
Sbjct: 66  LWNSMIRGYTRAGLHKEALEVFGYMSEAK----GIDPDKYTFTFALKACAGSMDFEEGLR 121

Query: 101 IHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRV 160
           IH  I + G  F  + Y+ T LV  Y K   L  A ++F ++ VK++ +W  ++    + 
Sbjct: 122 IHDLIAEMG--FESDVYIGTALVEMYCKAGDLVSARQVFDKMPVKDIVTWNTMVSGLAQN 179

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G S +AL  F +M    V  D+  L N++ A   L      R +HG V+K GF      +
Sbjct: 180 GCSSEALRLFRDMHSSFVDIDHVSLYNLIPAVSKLEKNDVCRCLHGLVIKKGFTSAF--S 237

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           S LIDMY KC DL  A  VF+ + +++  +W +M+  Y  NG  EE + +F  M    V 
Sbjct: 238 SGLIDMYCKCADLYAAECVFEEVFSKDESSWGTMMAAYAHNGSFEEVLELFDVMRNYDVR 297

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
             +V+  S L A+A +  L++G   H   V  GM  D  + +S+IN YSK G LE AE +
Sbjct: 298 MNKVAAASALQAAAYVGNLEKGIAIHEYTVQQGMMSDISVATSLINMYSKCGELELAEQL 357

Query: 341 FSRMVERDIVTWNLLIASYVQSGQ------------------------------------ 364
           F ++ +RD+V+W+ +IAS+ Q+GQ                                    
Sbjct: 358 FIKIKDRDVVSWSAMIASFEQAGQHDEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAAS 417

Query: 365 ----------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
                           S++  A++++ MYAKC       + F  + ++D + +N L   Y
Sbjct: 418 RLGKSIHCYAIKADVESELETATAVISMYAKCGLFSPTLKAFERLPIKDAIAFNALAQGY 477

Query: 409 ADLGRSGEASRLFYQMQLEGISPNI---------------ISWNSVILG-FLRNGQMNEA 452
             +G + +A  ++  M+L G+ P+                 +  S + G  +++G  +E 
Sbjct: 478 TQIGDASKAFDVYKNMKLHGVCPDSGTMVGMLQTCALCSDYARGSCVYGQIIKHGFDSEC 537

Query: 453 K------DMFLQMQSL----------GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
                  DMF +  +L          G + + ++W  +++G   +    EAI  F++M  
Sbjct: 538 HVAHALIDMFTKCDALAAAKSLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAIATFRQMKV 597

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
              +P+  T    + A  ++A+L  G ++H  LI+   C  TP+  SLVDMYAKCG I  
Sbjct: 598 EKFQPNAVTFVNIVRAAAELAALSLGMSVHSSLIQFGFCSHTPVGNSLVDMYAKCGMIES 657

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           +K+ F    +K +  +N M+S YA HGLA  A++LF ++Q+  + PDS++F ++L+AC H
Sbjct: 658 SKKCFIEIRNKNMVSWNTMLSAYAAHGLANCAVSLFLSMQENELKPDSVSFLSVLSACRH 717

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
           AGL  EG  +F  M   H+++  +EH+ C+V+LL + G  DEA+ ++  M       + G
Sbjct: 718 AGLAEEGKRIFKEMEERHKIEAKVEHYACMVDLLGKSGLFDEAVEMVRRMRVKASVGVWG 777

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +LL++        L+      L++LEP NP +       Y    R  E + V  I     
Sbjct: 778 ALLNSSRMHCNLWLSNAALCQLVKLEPLNPSH-------YGQDQRLGEANNVSRI----- 825

Query: 737 LRKNPGCSWIQI 748
            +K P CSWIQ+
Sbjct: 826 -KKVPACSWIQV 836



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 168/688 (24%), Positives = 301/688 (43%), Gaps = 132/688 (19%)

Query: 71  KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCD 130
           +C+NF++  +I+G L+           G + H +++     F R                
Sbjct: 14  ECKNFRLLLQIHGSLI---------VAGLKPHNQLINAYSLFQRP--------------- 49

Query: 131 ALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE-DGVSPDNFVLPNVL 189
             D++ ++   +    V  W ++I    R GL ++AL  F  M E  G+ PD +     L
Sbjct: 50  --DLSRKIVDSVPYPGVVLWNSMIRGYTRAGLHKEALEVFGYMSEAKGIDPDKYTFTFAL 107

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV 249
           KAC        G  +H  + ++GF+  V++ ++L++MY K GDL  AR+VFD M  +++V
Sbjct: 108 KACAGSMDFEEGLRIHDLIAEMGFESDVYIGTALVEMYCKAGDLVSARQVFDKMPVKDIV 167

Query: 250 AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVA 309
            WN+M+ G  QNG + EA+R+F +M    V+   VS+ +++ A + L+  D  +  H + 
Sbjct: 168 TWNTMVSGLAQNGCSSEALRLFRDMHSSFVDIDHVSLYNLIPAVSKLEKNDVCRCLHGLV 227

Query: 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----- 364
           +  G    +   S +I+ Y K   L  AE VF  +  +D  +W  ++A+Y  +G      
Sbjct: 228 IKKG--FTSAFSSGLIDMYCKCADLYAAECVFEEVFSKDESSWGTMMAAYAHNGSFEEVL 285

Query: 365 -----------------------------------------------SDVVVASSIVDMY 377
                                                          SD+ VA+S+++MY
Sbjct: 286 ELFDVMRNYDVRMNKVAAASALQAAAYVGNLEKGIAIHEYTVQQGMMSDISVATSLINMY 345

Query: 378 AKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           +KC  ++ A+Q+F  I  RDVV W+ ++A++   G+  EA  LF  M      PN ++  
Sbjct: 346 SKCGELELAEQLFIKIKDRDVVSWSAMIASFEQAGQHDEALSLFRDMMRTHFKPNAVTLT 405

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS--------------------- 476
           SV+ G          K +        V+  L T T +IS                     
Sbjct: 406 SVLQGCAGVAASRLGKSIHCYAIKADVESELETATAVISMYAKCGLFSPTLKAFERLPIK 465

Query: 477 ----------GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
                     G TQ    ++A   ++ M   G+ P + T+   L  C   +    G  ++
Sbjct: 466 DAIAFNALAQGYTQIGDASKAFDVYKNMKLHGVCPDSGTMVGMLQTCALCSDYARGSCVY 525

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISGYAMHGLA 585
           G +I+H       +  +L+DM+ KC  +  AK +FD    ++  V +N M++GY +HG A
Sbjct: 526 GQIIKHGFDSECHVAHALIDMFTKCDALAAAKSLFDKCGFEKSTVSWNIMMNGYLLHGQA 585

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG- 644
            EA+A F+ ++ +   P+++TF NI+ A +    ++ G+           V  S+  FG 
Sbjct: 586 EEAIATFRQMKVEKFQPNAVTFVNIVRAAAELAALSLGM----------SVHSSLIQFGF 635

Query: 645 --------CVVNLLSRCGNLDEALRVIL 664
                    +V++ ++CG ++ + +  +
Sbjct: 636 CSHTPVGNSLVDMYAKCGMIESSKKCFI 663



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 224/456 (49%), Gaps = 27/456 (5%)

Query: 23  LKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY 82
           L+L++    K+++ D        S+   I+S  +  Q  EA+ L  +M   +F+      
Sbjct: 351 LELAEQLFIKIKDRD------VVSWSAMIASFEQAGQHDEALSLFRDMMRTHFKPNAVTL 404

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
             +LQGC        G+ IH   +K  D  +  E   T ++  YAKC       + F RL
Sbjct: 405 TSVLQGCAGVAASRLGKSIHCYAIK-ADVESELE-TATAVISMYAKCGLFSPTLKAFERL 462

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
            +K+  ++ A+     ++G + KA   +  M+  GV PD+  +  +L+ C        G 
Sbjct: 463 PIKDAIAFNALAQGYTQIGDASKAFDVYKNMKLHGVCPDSGTMVGMLQTCALCSDYARGS 522

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQN 261
            V+G ++K GFD    VA +LIDM+ KC  L  A+ +FD     ++ V+WN M+ GY+ +
Sbjct: 523 CVYGQIIKHGFDSECHVAHALIDMFTKCDALAAAKSLFDKCGFEKSTVSWNIMMNGYLLH 582

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G  EEAI  F +M +E  +P  V+  +I+ A+A L AL  G   H+  +  G      +G
Sbjct: 583 GQAEEAIATFRQMKVEKFQPNAVTFVNIVRAAAELAALSLGMSVHSSLIQFGFCSHTPVG 642

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
           +S+++ Y+K G++E ++  F  +  +++V+WN ++++Y   G     +A+  V ++   +
Sbjct: 643 NSLVDMYAKCGMIESSKKCFIEIRNKNMVSWNTMLSAYAAHG-----LANCAVSLFLSMQ 697

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVI 440
             +         +  D V + ++L+A    G + E  R+F +M +   I   +  +  ++
Sbjct: 698 ENE---------LKPDSVSFLSVLSACRHAGLAEEGKRIFKEMEERHKIEAKVEHYACMV 748

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
               ++G  +EA +M  +M+   V+ ++  W  L++
Sbjct: 749 DLLGKSGLFDEAVEMVRRMR---VKASVGVWGALLN 781



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 153/381 (40%), Gaps = 98/381 (25%)

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           ++++ M  +C+      Q+  S+I+  +   N L+ AY+   R   + ++   +      
Sbjct: 6   TTLLRMLRECKNFRLLLQIHGSLIVAGLKPHNQLINAYSLFQRPDLSRKIVDSVPY---- 61

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
           P ++ WNS+I G+ R G   EA ++F  M                         +EA   
Sbjct: 62  PGVVLWNSMIRGYTRAGLHKEALEVFGYM-------------------------SEA--- 93

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
                  GI P   T T AL AC        G  IH  +          I T+LV+MY K
Sbjct: 94  ------KGIDPDKYTFTFALKACAGSMDFEEGLRIHDLIAEMGFESDVYIGTALVEMYCK 147

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
            G++  A++VFD  P K++  +N M+SG A +G + EAL LF+++    +D D ++  N+
Sbjct: 148 AGDLVSARQVFDKMPVKDIVTWNTMVSGLAQNGCSSEALRLFRDMHSSFVDIDHVSLYNL 207

Query: 611 LNA-----------CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           + A           C H  ++ +G   F   FS             ++++  +C +L   
Sbjct: 208 IPAVSKLEKNDVCRCLHGLVIKKG---FTSAFSSG-----------LIDMYCKCADL--- 250

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
                                          AE + E +   +  + G  +A   AYA +
Sbjct: 251 -----------------------------YAAECVFEEVFSKDESSWGTMMA---AYAHN 278

Query: 720 GRWNEVSQVRDIMKEKGLRKN 740
           G + EV ++ D+M+   +R N
Sbjct: 279 GSFEEVLELFDVMRNYDVRMN 299



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 20/174 (11%)

Query: 501 PST-TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           P+T TT+   L  C +   L     IHG LI   L    P    L++ Y+       +++
Sbjct: 2   PNTCTTLLRMLRECKNFRLLLQ---IHGSLIVAGL---KP-HNQLINAYSLFQRPDLSRK 54

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ-KGIDPDSITFTNILNACSHAG 618
           + D  P   + ++N+MI GY   GL  EAL +F  + + KGIDPD  TFT  L AC+ + 
Sbjct: 55  IVDSVPYPGVVLWNSMIRGYTRAGLHKEALEVFGYMSEAKGIDPDKYTFTFALKACAGSM 114

Query: 619 LVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
              EGL +      +G  SD  +  ++      V +  + G+L  A +V   MP
Sbjct: 115 DFEEGLRIHDLIAEMGFESDVYIGTAL------VEMYCKAGDLVSARQVFDKMP 162


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 209/681 (30%), Positives = 323/681 (47%), Gaps = 111/681 (16%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-----------GMIA---- 245
            R VH +++  GF    ++ + LID+Y K  DL  A  +FD            +IA    
Sbjct: 34  ARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSS 93

Query: 246 ------------------RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
                             R+ V +N+MI GY  N     AI +F ++   G  P   + T
Sbjct: 94  AGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFT 153

Query: 288 SILSASANLDALDEGK--QAHAVAVING-------------------------------- 313
           S+L A A L   DE +  Q H   V +G                                
Sbjct: 154 SVLGALA-LIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAA 212

Query: 314 --------MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-- 363
                    E D +  +++I  Y + G L+ A      M E+ +V WN +I+ YV  G  
Sbjct: 213 ARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFF 272

Query: 364 ---------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILR---------DVV 399
                          Q D    +S++   A      + KQV ++ ILR          + 
Sbjct: 273 LEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQV-HAYILRTEPRPSLDFSLS 331

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
           + N L   Y   G+  EA ++F QM ++    +++SWN+++ G++  G+++EAK  F +M
Sbjct: 332 VNNALATLYWKCGKVDEARQVFNQMPVK----DLVSWNAILSGYVNAGRIDEAKSFFEEM 387

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
                + NL+TWT +ISGL QN  G E++  F  M   G +P       A+ AC  +A+L
Sbjct: 388 P----ERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAAL 443

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579
            +GR +H  L+R           +L+ MYAKCG +  A  +F   P  +   +NAMI+  
Sbjct: 444 MHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAAL 503

Query: 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
             HG   +AL LF+ + ++ I PD ITF  +L+ CSHAGLV EG   F  M   + + P 
Sbjct: 504 GQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPG 563

Query: 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
            +H+  +++LL R G   EA  +I TMP +P   I  +LL+ C      +L    +E L 
Sbjct: 564 EDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLF 623

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           +L P + G YV LSN YA  GRW++V++VR +M++KG++K PGCSWI++  ++HVF+  D
Sbjct: 624 ELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDD 683

Query: 760 RSHPKTEEIYATLALLGMHVR 780
             HP+ + +Y  L  LG+ +R
Sbjct: 684 IVHPEVQAVYNYLEELGLKMR 704



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 185/400 (46%), Gaps = 53/400 (13%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           R+E   T ++  Y +   LD A +    +  K V +W A+I      G   +AL  F +M
Sbjct: 223 RDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKM 282

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV----GFDGCVFVASSLIDMYGK 229
              G+  D F   +VL AC   G+   G+ VH Y+L+       D  + V ++L  +Y K
Sbjct: 283 YLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWK 342

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYV------------------------------ 259
           CG ++EAR+VF+ M  +++V+WN+++ GYV                              
Sbjct: 343 CGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGL 402

Query: 260 -QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            QNG  EE++++F  M  EG EP   +    + A A L AL  G+Q HA  V  G +   
Sbjct: 403 AQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSL 462

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
             G+++I  Y+K G++E A  +F  M   D V+WN +IA+  Q G               
Sbjct: 463 SAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHG------------- 509

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWN 437
             + ++  + +    IL D + + T+L+  +  G   E  R F  M  L GI P    + 
Sbjct: 510 -AQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYA 568

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            +I    R G+ +EAKDM   ++++ V+P    W  L++G
Sbjct: 569 RMIDLLCRAGKFSEAKDM---IETMPVEPGPPIWEALLAG 605



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 178/416 (42%), Gaps = 61/416 (14%)

Query: 37  DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMY 96
           D   E L  ++   IS         EA+++  +M     Q     Y  +L  C       
Sbjct: 249 DGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFL 308

Query: 97  TGQQIHARILKNG-----DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWA 151
            G+Q+HA IL+       DF   +  V   L   Y KC  +D A ++F ++ VK++ SW 
Sbjct: 309 HGKQVHAYILRTEPRPSLDF---SLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWN 365

Query: 152 AII--------------------------------GLNCRVGLSEKALIGFVEMQEDGVS 179
           AI+                                GL  + G  E++L  F  M+ +G  
Sbjct: 366 AILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGL-AQNGFGEESLKLFNRMKSEGFE 424

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           P ++     + AC  L  +  GR +H  ++++GFD  +   ++LI MY KCG +E A  +
Sbjct: 425 PCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCL 484

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F  M   + V+WN+MI    Q+G   +A+ +F  M  E + P R++  ++LS  ++   +
Sbjct: 485 FLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLV 544

Query: 300 DEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIA 357
           +EG +   +++ + G+       + +I+   + G   +A+ +   M VE     W  L+A
Sbjct: 545 EEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLA 604

Query: 358 SYVQSGQSDVVVASS----------------IVDMYAKCERIDNAKQVFNSIILRD 397
                G  D+ + ++                + +MYA   R D+  +V    ++RD
Sbjct: 605 GCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRK--LMRD 658


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 179/573 (31%), Positives = 317/573 (55%), Gaps = 26/573 (4%)

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCG-DLEEA 236
           +S   F   ++L+ C        G   H + +K G D   FV +SL+ +Y K G +L EA
Sbjct: 56  LSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEA 115

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           R+VFDG+  +++++W SMI GYV+    ++++ +F EM   G+EP   ++++++ A + L
Sbjct: 116 RRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGL 175

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
             L  GK  H V ++ G +L++V+ +++I+ Y +   ++DA +VF  + + D + W  +I
Sbjct: 176 GDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSII 235

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
           +++ ++   D  +       Y+ C +   +   F          + T+L A  +LGR  +
Sbjct: 236 SAFTRNDVYDKALGF----FYSMCRKHGLSPDGFT---------FGTVLTACGNLGRLKQ 282

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
              +  ++   G+S N+   +S++  + +   +N+++ +F +M       NL++WT L+ 
Sbjct: 283 GKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSV----KNLVSWTALLG 338

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           G  QN      I  F+E    G K  T +    L AC  +A++R G+ +H   ++   C 
Sbjct: 339 GYCQNGDFESVIRIFRE----GKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKR--CC 392

Query: 537 PTPIVT--SLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
              +VT  +LVD+YAKCG I  A R+F     + L  +N+MI G+A +G   E   LF  
Sbjct: 393 WRDVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDE 452

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           + ++GI PD I+F  +L ACSHAGLV++G + F  M   +++KP +EH+ C+++LL R G
Sbjct: 453 MIEEGIRPDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAG 512

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L+EA  +I    C  +  +   LL  C  S  +  AE I++  ++L+PD+  +YV L+N
Sbjct: 513 LLEEAENLIENANCRDEPSLWTVLLGACAASPHSATAERIAKKAVELKPDHHLSYVYLAN 572

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
            Y A GRW++  ++R++M ++G+ K PG SWI+
Sbjct: 573 VYRAVGRWDDAVKIRNLMTKRGVGKMPGTSWIE 605



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/518 (27%), Positives = 246/518 (47%), Gaps = 53/518 (10%)

Query: 21  KPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPE 80
           K L  SQ H + L   +       +S  ++I    K   + EA+ +L  +        P 
Sbjct: 2   KLLLSSQRHYSTLASLNLKTLENPQSKAYKIIQYCKSGSLFEAIHVLNSIDWTRLSNKPF 61

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA-LDVASRLF 139
            Y  LLQ C        G Q H+  +K+G     + +V   L+  Y K    L  A R+F
Sbjct: 62  FYASLLQTCTKAVSFTHGIQFHSHAIKSG--LDTDRFVGNSLLALYFKLGPNLFEARRVF 119

Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
             L  K++ SW ++I    +V   +K+L  F+EM   G+ P+ F L  V+KAC  LG + 
Sbjct: 120 DGLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLR 179

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            G+  HG V+  GFD    ++++LIDMYG+   +++A  VF  +   + + W S+I  + 
Sbjct: 180 LGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFT 239

Query: 260 QNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           +N + ++A+  FY M  + G+ P   +  ++L+A  NL  L +GK+ HA  + +G+  + 
Sbjct: 240 RNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNV 299

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------- 364
            + SS+++ Y K  L+  ++ VF RM  +++V+W  L+  Y Q+G               
Sbjct: 300 FVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFREGKKV 359

Query: 365 ----------------------------------SDVVVASSIVDMYAKCERIDNAKQVF 390
                                              DVV  S++VD+YAKC  ID A ++F
Sbjct: 360 DTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIF 419

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
             + +R+++ WN+++  +A  GR GE  +LF +M  EGI P+ IS+  V+      G ++
Sbjct: 420 VRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAGLVD 479

Query: 451 EAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEA 487
           + K  F  M  +  ++P +  +  +I  L +     EA
Sbjct: 480 QGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEA 517


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  318 bits (816), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 189/646 (29%), Positives = 325/646 (50%), Gaps = 98/646 (15%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG---VEPTRVS 285
           K   L++AR +FD +  R+ V+W ++I GYV +  + EA+R+F +M L+    ++P  +S
Sbjct: 61  KTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLS 120

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           +  + +    L+ L  G   H  +V  G+     +GS++++ Y K+G +  +  VF  M 
Sbjct: 121 L-GLKTCGLGLNYL-YGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMP 178

Query: 346 ERDIVTWNLLIASYVQSGQSDV-------------------------------------- 367
            R+ VTW  +I   V++G S+                                       
Sbjct: 179 TRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRS 238

Query: 368 --------------VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                          VA+S+  MY KC ++D     F  +   DVV W T++ AY  +G+
Sbjct: 239 IHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGK 298

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVI---------------------LGFL-------- 444
                + F +M+   + PN  ++++VI                     +GF+        
Sbjct: 299 EDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANS 358

Query: 445 ------RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
                 + G++     +F  M+      ++ITW+T+I+  +Q   G EA  +   M   G
Sbjct: 359 IMTLYSKCGELASVSKVFCSMKF----RDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEG 414

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
            KP+   +   LS C  +A L  G+ +H +++   L   + + ++L+ MYAKCG+I +A 
Sbjct: 415 PKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEAS 474

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           ++F  S   ++  + AMISGYA HG + EA+ LF+N+Q+ G+ PDS+TF  +L ACSHAG
Sbjct: 475 KIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAG 534

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           +V+ G   F  M  D+ + PS EH+GC+++LL R G L +A  +I +MP   D  +  +L
Sbjct: 535 MVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTL 594

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L  C    + +  +  +  +L+L+P+  G ++ L+N +AA G+W E + +R +MK KG+ 
Sbjct: 595 LRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVV 654

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL--GMHVRLV 782
           K PG S +++ + +  FV+ DRSHP+ E+IY  L  L  GM + ++
Sbjct: 655 KEPGWSSVKVKDSVFAFVSGDRSHPQGEDIYNILEELASGMEIYIL 700



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 155/619 (25%), Positives = 256/619 (41%), Gaps = 129/619 (20%)

Query: 8   TPPNPKFSHTKPQK-PLKLSQTHLTKLRESDNSYESLYK--------------------S 46
           T  NP+  +TKP    L    ++   L E++N  + L K                    S
Sbjct: 23  TNDNPRHLYTKPLSLTLNAHFSNKVDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVS 82

Query: 47  YFHQISSLSKEKQIREAVDLLTEMKCRN-FQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           + + IS         EA+ L ++M+ ++  +I P +    L+ C    +   G  +H   
Sbjct: 83  WTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFS 142

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K G     + +V + L+  Y K   +  + ++F  +  +N  +W A+I    R G SE 
Sbjct: 143 VKTG--LVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEA 200

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
            L  F  M    V  D++     LKA    G +  GR++H   LK GFD   FVA+SL  
Sbjct: 201 GLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTT 260

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY KCG L+     F  M   +VV+W +++  Y+Q G  +  ++ F  M    V P   +
Sbjct: 261 MYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYT 320

Query: 286 VTSILSASANLDALDEGKQAHA----VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
            ++++S  AN   L  G+Q HA    V  +N + + N    SI+  YSK G L     VF
Sbjct: 321 FSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVAN----SIMTLYSKCGELASVSKVF 376

Query: 342 SRMVERDIVTWNLLIASYVQSG-------------------------------------- 363
             M  RDI+TW+ +IA+Y Q G                                      
Sbjct: 377 CSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILE 436

Query: 364 --------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                         +   +V S+++ MYAKC  I  A ++F      D++ W  +++ YA
Sbjct: 437 QGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYA 496

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LGFL--------------- 444
           + G S EA  LF  +Q  G+ P+ +++  V+          LGF                
Sbjct: 497 EHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSK 556

Query: 445 -----------RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN---SCGNEAILF 490
                      R G++++A+ +   ++S+ +Q + + W+TL+     +    CG  A   
Sbjct: 557 EHYGCMIDLLCRAGRLHDAETL---IRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAA-- 611

Query: 491 FQEMLETGIKPSTTTITCA 509
             E+L+     + T IT A
Sbjct: 612 -AEVLKLDPNCAGTHITLA 629


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  318 bits (816), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 198/678 (29%), Positives = 331/678 (48%), Gaps = 93/678 (13%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y+    L  A  LF     +N  +W  ++  +   G +  AL  F  M  +GV PD   +
Sbjct: 84  YSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTV 143

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
             VL   G         ++H + +K G D  VFV ++L+D Y K G L  AR+VF  M  
Sbjct: 144 TTVLNLPGCTV-----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHD 198

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           ++ V +N+M++G  + GL+ +A+++F  M   G+  T  + +SIL+ +A +  L  G Q 
Sbjct: 199 KDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQV 258

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           HA+ + +         +S++N                                       
Sbjct: 259 HALVLRS---------TSVLN--------------------------------------- 270

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
            V V +S++D Y+KC+ +D+ +++F+ +  RD V +N ++AAYA    +    RLF +MQ
Sbjct: 271 -VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 329

Query: 426 LEGISPNIISW-----------------------------------NSVILGFLRNGQMN 450
             G    ++ +                                   N++I  + + G ++
Sbjct: 330 KLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLD 389

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
            AK  F    S   + + I+WT LI+G  QN    EA+  F +M   G++P   T +  +
Sbjct: 390 AAKSNF----SNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSII 445

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
            A + +A +  GR +H YLIR          + LVDMYAKCG + +A R FD  P +   
Sbjct: 446 KASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSI 505

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
            +NA+IS YA +G A  A+ +F+ +   G +PDS+TF ++L ACSH GL +E ++ F  M
Sbjct: 506 SWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLM 565

Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETEL 690
              + + P  EH+ CV++ L R G   +  ++++ MP   D  I  S+L +C      EL
Sbjct: 566 KHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQEL 625

Query: 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGE 750
           A   ++ L  +EP +   YV LSN YA +G+W + + V+ IM+++G+RK  G SW++I +
Sbjct: 626 ARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQ 685

Query: 751 ELHVFVACDRSHPKTEEI 768
           +++ F + D + P  +EI
Sbjct: 686 KIYSFASNDLTSPMIDEI 703



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 228/467 (48%), Gaps = 40/467 (8%)

Query: 55  SKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFAR 114
           SKE    +A+ L   M+          +  +L        +  G Q+HA +L++      
Sbjct: 212 SKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL-- 269

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ 174
           N +V   L+ FY+KCD LD   RLF  +  ++  S+  II        +   L  F EMQ
Sbjct: 270 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 329

Query: 175 EDGVSPDNFVLP--NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           + G   D  VLP   +L   G+L  V  G+ +H  ++ +G      + ++LIDMY KCG 
Sbjct: 330 KLGF--DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGM 387

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           L+ A+  F     ++ ++W ++I GYVQNG +EEA+++F +M   G+ P R + +SI+ A
Sbjct: 388 LDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA 447

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
           S++L  +  G+Q H+  + +G +     GS +++ Y+K G L++A   F  M ER+ ++W
Sbjct: 448 SSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISW 507

Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL----RDVVLWNTLLAAY 408
           N +I++Y   G++                   NA ++F  ++      D V + ++LAA 
Sbjct: 508 NAVISAYAHYGEA------------------KNAIKMFEGMLHCGFNPDSVTFLSVLAAC 549

Query: 409 ADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
           +  G + E  + F+ M+ +  ISP    +  VI    R G  ++ + M ++M     + +
Sbjct: 550 SHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMP---FKAD 606

Query: 468 LITWTTLISGLTQNSC---GNEAILFFQEMLETGIKPSTTTITCALS 511
            I WT+++     +SC   GN+ +         G++P+  T    LS
Sbjct: 607 PIIWTSIL-----HSCRIHGNQELARVAADKLFGMEPTDATPYVILS 648



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 225/501 (44%), Gaps = 59/501 (11%)

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED 176
           +V   L+  Y K   L  A R+F  +  K+  ++ A++    + GL  +AL  F  M+  
Sbjct: 171 FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA 230

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G+   +F   ++L     +  +  G  VH  VL+      VFV +SL+D Y KC  L++ 
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDM 290

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           R++FD M  R+ V++N +I  Y  N      +R+F EM   G +   +   ++LS + +L
Sbjct: 291 RRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL 350

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
             +  GKQ HA  V+ G+  +++LG+++I+ YSK G+L+ A+  FS   E+  ++W  LI
Sbjct: 351 PDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALI 410

Query: 357 ASYVQSGQ-----------------------SDVVVASS--------------------- 372
             YVQ+GQ                       S ++ ASS                     
Sbjct: 411 TGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYK 470

Query: 373 --------IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424
                   +VDMYAKC  +D A + F+ +  R+ + WN +++AYA  G +  A ++F  M
Sbjct: 471 SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGM 530

Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWTTLISGLTQNSC 483
              G +P+ +++ SV+     NG  +E    F L      + P    +  +I  L +  C
Sbjct: 531 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGC 590

Query: 484 GNEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542
            ++     Q+ML E   K      T  L +C    +    R     L   +    TP V 
Sbjct: 591 FSQV----QKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVI 646

Query: 543 SLVDMYAKCGNIHQAKRVFDI 563
            L ++YA+ G    A  V  I
Sbjct: 647 -LSNIYARAGQWEDAACVKKI 666



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/471 (21%), Positives = 191/471 (40%), Gaps = 109/471 (23%)

Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFN 391
           G L  A  +F +M  ++I + NL++++Y  SG                   +  A+ +F 
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGD------------------LPAAQHLFL 98

Query: 392 SIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS---------------- 435
           S   R+   W  ++ A+A  GR+ +A  LF  M  EG+ P+ ++                
Sbjct: 99  SSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLH 158

Query: 436 --------------WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
                          N+++  + ++G +  A+ +FL+M       + +T+  ++ G ++ 
Sbjct: 159 PFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMH----DKDAVTYNAMMMGCSKE 214

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541
               +A+  F  M   GI  +  T +  L+    +A L  G  +H  ++R    L   + 
Sbjct: 215 GLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVN 274

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
            SL+D Y+KC  +   +R+FD  P ++   YN +I+ YA +  A   L LF+ +Q+ G D
Sbjct: 275 NSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFD 334

Query: 602 PDSITFTNILNACS-----HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
              + +  +L+        H G       + +G+ S+  +  ++      +++ S+CG L
Sbjct: 335 RQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNAL------IDMYSKCGML 388

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
           D A                        KSN +  +E            +  ++ AL   Y
Sbjct: 389 DAA------------------------KSNFSNRSE-----------KSAISWTALITGY 413

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGC-----------SWIQIGEELHVFV 756
             +G+  E  Q+   M+  GLR +              + I +G +LH ++
Sbjct: 414 VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYL 464



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 27/200 (13%)

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
            M++TG    T  +   L +      L   RA+   +   ++     I+++    Y+  G
Sbjct: 33  RMVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSA----YSSSG 88

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           ++  A+ +F  SP +    +  M+  +A  G   +AL+LF+ +  +G+ PD +T T +LN
Sbjct: 89  DLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN 148

Query: 613 --ACS----HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC--GNLDEALRVIL 664
              C+    H   +  GL+  V              F C   L + C  G L  A RV L
Sbjct: 149 LPGCTVPSLHPFAIKFGLDTHV--------------FVCNTLLDAYCKHGLLAAARRVFL 194

Query: 665 TMPCDPDAHIIGSLLSTCVK 684
            M  D DA    +++  C K
Sbjct: 195 EMH-DKDAVTYNAMMMGCSK 213


>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
 gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
          Length = 828

 Score =  318 bits (816), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 220/778 (28%), Positives = 367/778 (47%), Gaps = 99/778 (12%)

Query: 81  IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
           +Y  L + C   R +    Q+HA ++        N    TKL+  Y++  +L  +  +F 
Sbjct: 3   LYMPLFRTCSTLRRL---TQLHAHLVVTS--LHNNPLASTKLLESYSQMGSLQSSRLVFY 57

Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGF---VEMQEDGVSPDNFVLPNVLKACGALGW 197
                + F ++ +I  +    L  + L  F   ++M         F+ P+V++A   +G 
Sbjct: 58  THPSPDSFMFSVLIKCHLWNHLFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGE 117

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           +  GR +HG +LK GF     + +SL+ MYG+   L +A+KVFD M  R++V W+S+I  
Sbjct: 118 LIVGRKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISC 177

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           YV+NG+  E + +F  M  EG+ P  V + S+  A   +  L   K  H   +  GM  D
Sbjct: 178 YVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGD 237

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS--------------- 362
             L +S+I  YS+ G L  A+ +F  + +R    W  +I++Y Q+               
Sbjct: 238 GSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQD 297

Query: 363 --------------------------------------GQSDVVVASSIVDMYAKCERID 384
                                                 G + + +  +++D Y+ C ++ 
Sbjct: 298 SEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSACWKMS 357

Query: 385 NAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI----------- 433
           + +++ +SI   ++V WNTL++ YA  G + EA   F  M  +GI P+            
Sbjct: 358 SCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFSLASSISASA 417

Query: 434 ----------ISWNSVILGFLRNGQMNEAKDMFLQMQSLGV---------QPNLITWTTL 474
                     I  + +  GF      N   DM+ +                 +++ W  +
Sbjct: 418 SSGSIQFGQQIHGHVMKRGFFDEFVQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCM 477

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI---- 530
           I G +QN    EA+  F EM +  ++ +  T   A+ AC+++  L  G+ IH  +I    
Sbjct: 478 ICGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGN 537

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           ++DL     I T+LVDMYAKCG++  A++VFD    K +  ++ MI+ + +HG    A +
Sbjct: 538 QNDL----YIDTALVDMYAKCGDLQTAQKVFDSIVEKSVVSWSTMIAAHGIHGQINAATS 593

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF  +    I P+ +TF NIL+AC HAG V EG   F  M   + + P++EHF  +V+LL
Sbjct: 594 LFHKMVLSNIKPNEVTFMNILSACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLL 653

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
           SR G+++ A  +I ++     A I G+LL+ C      ++ EYI+E L  +  D+ G Y 
Sbjct: 654 SRAGDINGAYEIIKSIRTPVAASIWGALLNGCRIYGRMDMIEYIAEELGGISTDDTGYYT 713

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
            LSN YA  G W E  +VR  M+  GL+K PG S ++I  +++ F + D S  + +EI
Sbjct: 714 LLSNIYAEGGNWYESRKVRSKMEGMGLKKVPGYSTVEIDRKIYRFGSGDTSEWQMKEI 771



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 221/432 (51%), Gaps = 28/432 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+ ++ +   EA+D+  +M+    +        +L  C     +  G+ +H  +L+N  
Sbjct: 276 ISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNA- 334

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
                  +   L+ FY+ C  +    +L   +  +N+ SW  +I    R GL+++A+  F
Sbjct: 335 MGVTGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFF 394

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M   G+ PD+F L + + A  + G + FG+ +HG+V+K GF    FV +SL+DMY KC
Sbjct: 395 ACMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGHVMKRGFFD-EFVQNSLMDMYSKC 453

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G    A  +F+ +  +++VAWN MI G+ QNG++ EA+ +F EM    +E  +V+  S +
Sbjct: 454 GFASSAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAI 513

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A +NL  LD+GK  H   ++ G + D  + +++++ Y+K G L+ A+ VF  +VE+ +V
Sbjct: 514 QACSNLGYLDKGKWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTAQKVFDSIVEKSVV 573

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV----VLWNTLLA 406
           +W+ +IA++   GQ                  I+ A  +F+ ++L ++    V +  +L+
Sbjct: 574 SWSTMIAAHGIHGQ------------------INAATSLFHKMVLSNIKPNEVTFMNILS 615

Query: 407 AYADLGRSGEASRLFYQMQ-LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ 465
           A    G   E    F  M+   GI PN+  + S++    R G +N A ++   ++S+   
Sbjct: 616 ACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYEI---IKSIRTP 672

Query: 466 PNLITWTTLISG 477
                W  L++G
Sbjct: 673 VAASIWGALLNG 684


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  318 bits (816), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 187/609 (30%), Positives = 303/609 (49%), Gaps = 61/609 (10%)

Query: 202 RAVHGYVLKVGF---DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
           + +HG+ +  G       + + S L   Y  CG +  ARK+FD +   ++  WN++I  Y
Sbjct: 99  KILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMY 158

Query: 259 VQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
           V  G + +A+RVF  M   G   P + +   ++ A + +  L+ G   H  A+++G   +
Sbjct: 159 VDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSN 218

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------- 363
             + +S++  Y   G +  A  VF+ M++R +V+WN +I+ + Q+G              
Sbjct: 219 MFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMD 278

Query: 364 --------------------------------------QSDVVVASSIVDMYAKCERIDN 385
                                                 Q  + V +++VDMY++C  ID 
Sbjct: 279 ARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGIDE 338

Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445
           A  VF     +DV+ W +++  Y   G +  A  L   MQL+G+ PN ++  S++     
Sbjct: 339 ASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACAS 398

Query: 446 NGQMN---EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502
              M     A     Q+ +   +   + W  L+SGL  N    EA+  F+ ML   ++ +
Sbjct: 399 LCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEAN 458

Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
             T    + A   +A L+    +H YL+R        ++T L+DMY+KCG++  A ++FD
Sbjct: 459 HATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFD 518

Query: 563 ISPSKE--LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
             P+KE  + V++ +I+GY MHG    A+ LF  +   G+ P+ ITFT++L+ACSH GLV
Sbjct: 519 EIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLV 578

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
           ++GL LF  M  ++   P   H+ CVV+LL R G LDEA  +I +MP   +  I G+LL 
Sbjct: 579 DDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLG 638

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C+     EL E  +E L +LEP++ GNY+ L+N YAA GRW +   VR IM + GLRK 
Sbjct: 639 ACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVGRWKDAENVRHIMSKIGLRKT 698

Query: 741 PGCSWIQIG 749
           P  S + + 
Sbjct: 699 PAQSSVGVA 707



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 154/559 (27%), Positives = 266/559 (47%), Gaps = 61/559 (10%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNE-YVETKLVVFYAKCDALDVASRLFCRLR 143
           LL+     R +   + +H   + +G   + N  ++ + L V YA C  + +A +LF  L 
Sbjct: 85  LLRHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLS 144

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGR 202
             ++F W AII +    G    AL  F  M   G   PD +  P V+KAC  +  +  G 
Sbjct: 145 DPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGV 204

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            +HG  L  GF   +FV +SL+ MY  CG +  AR+VF+ M+ R+VV+WN+MI G+ QNG
Sbjct: 205 LIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNG 264

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             EEA+ VF  M    VEP   ++ S L +   L  L+ G + H +   N ++    + +
Sbjct: 265 RPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRN 324

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA------------ 370
           ++++ YS+ G +++A +VF+   E+D++TW  +I  Y+ +G +   +A            
Sbjct: 325 ALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVP 384

Query: 371 ------------SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
                       +S+  MYAKC  +  + QVF     +  V WN LL+       + EA 
Sbjct: 385 NAVTLASLLSACASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAV 444

Query: 419 RLFYQMQLEGISPNIISWNSVILGF----------------LRNGQMNEAK------DMF 456
            LF  M +E +  N  ++NSVI  +                +R+G +++        DM+
Sbjct: 445 GLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMY 504

Query: 457 LQMQSLGV-----------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT 505
            +  SL             + ++I W+ LI+G   +  G  A+L F +M+ +G++P+  T
Sbjct: 505 SKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEIT 564

Query: 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP-IVTSLVDMYAKCGNIHQAKRVFDIS 564
            T  L AC+    + +G  +  Y+I +    P P   T +VD+  + G + +A  +    
Sbjct: 565 FTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSM 624

Query: 565 PSKE-LPVYNAMISGYAMH 582
           P ++   ++ A++    +H
Sbjct: 625 PFQQNHSIWGALLGACLIH 643



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 113/262 (43%), Gaps = 50/262 (19%)

Query: 518 SLRNGRAIHGYLIRHDLCLPTP----IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
           SL   + +HG+ I   L L +P    + + L   YA CG +  A+++FD      L ++N
Sbjct: 94  SLNKTKILHGHTITSGL-LHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWN 152

Query: 574 AMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLEL----FV 628
           A+I  Y   G   +AL +F ++   G   PD  TF  ++ ACS   ++N G+ +     V
Sbjct: 153 AIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGVLIHGRALV 212

Query: 629 GMFSDH--------------------------QVKPSMEHFGCVVNLLSRCGNLDEALRV 662
             FS +                           +K S+  +  +++   + G  +EAL V
Sbjct: 213 SGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAV 272

Query: 663 ILTM---PCDPDAHIIGSLLSTCVKSNETELA----EYISEHLLQ--LEPDNPGNYVALS 713
             +M     +PD+  I S L +C    E EL     + + ++ LQ  +E  N     AL 
Sbjct: 273 FNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRN-----ALV 327

Query: 714 NAYAASGRWNEVSQVRDIMKEK 735
           + Y+  G  +E S V    KEK
Sbjct: 328 DMYSRCGGIDEASLVFAETKEK 349


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  318 bits (816), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 197/693 (28%), Positives = 327/693 (47%), Gaps = 121/693 (17%)

Query: 170 FVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
           FV++     + PD+F L + L AC  L +   G  +H Y ++ G      V ++L+  Y 
Sbjct: 40  FVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHVGNTLLSFYA 99

Query: 229 KCGDLEEARKVFDGMIARNV-------------------------------VAWNSMIVG 257
           K  DL   ++VF+ +   +V                               V WN++I G
Sbjct: 100 KSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITG 159

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
             +N   E A+ +F EM   GV   + +  S+LS   +L+ LD G++ H + +  G  + 
Sbjct: 160 CAENKHTEIALNLFREMHQLGVRHDKYTFASVLSL-CSLELLDFGREVHTLVIKTGFLVR 218

Query: 318 NVLGSSIINFYSKVGLLEDAEVVF--SRMVERDIVTWNLLIASYVQSGQSD--------- 366
             + ++++  Y   G + DA  VF  +     D +T+N++I      G+ +         
Sbjct: 219 ASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEM 278

Query: 367 ----------------------------------------VVVASSIVDMYAKCERIDNA 386
                                                     V+++ + MY+ C  +   
Sbjct: 279 QEACLRPTELTFVSVMSSCSSARVSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAV 338

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN-------------- 432
             VF+ +  +D++ WN ++  YA       A   F QMQ  GI P+              
Sbjct: 339 HMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASSESL 398

Query: 433 ------------------IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
                             I   N+++  F ++GQ+ +A  +F  M S    PNLI+W T+
Sbjct: 399 EIVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSS----PNLISWNTI 454

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           ISG   N    + +  F E+L + +KP+  T++  LS C  +++LR+G+ IHGY++R  +
Sbjct: 455 ISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGV 514

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
              T +  +L+ MYAKCG++  + R+F++   +++  +NAMIS YA HG   EA+  FK 
Sbjct: 515 FSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKA 574

Query: 595 LQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
           +Q  G + PD  TFT +L+ACSHAGLV++G  +F  M +D+  +P  +H  C+V+LL R 
Sbjct: 575 MQDSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRA 634

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G L+EA R+I +      + I  +L S C       L   ++  LL++E ++P  YV LS
Sbjct: 635 GYLEEAERLINSKHLKIVSSIWWTLFSACAAHGNLRLGRIVAGFLLEIEQNDPAVYVLLS 694

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
           N YAA+G+W E +  RD+M++  + K PGCSWI
Sbjct: 695 NIYAAAGQWEEAANTRDLMQKTRVAKQPGCSWI 727



 Score =  168 bits (426), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/570 (23%), Positives = 257/570 (45%), Gaps = 71/570 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+  ++ K    A++L  EM     +     +  +L  C  +  +  G+++H  ++K G 
Sbjct: 157 ITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCSLEL-LDFGREVHTLVIKTG- 214

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLF--CRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           F  R   +   L +++      D A  +F      V +  ++  +IG    VG  E+ALI
Sbjct: 215 FLVRASVINALLTMYFNSGKVAD-AYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALI 273

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F EMQE  + P      +V+ +C +         VH   +K+GF+ C  V+++ + MY 
Sbjct: 274 MFKEMQEACLRPTELTFVSVMSSCSS---ARVSHQVHAQAIKMGFEACTPVSNAAMTMYS 330

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
            CG+L     VFD +  +++++WN +I+ Y Q      AI  F +M   G+EP   ++ S
Sbjct: 331 SCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGS 390

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
           +L++S +L+ +   K   A+   NG+     + +++++ +SK G +E A  VF+ M   +
Sbjct: 391 LLASSESLEIV---KMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPN 447

Query: 349 IVTWNLLIASYVQSG--------------------------------------------- 363
           +++WN +I+ ++ +G                                             
Sbjct: 448 LISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHG 507

Query: 364 ---QSDVVVASS----IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
              +S V   +S    ++ MYAKC  +D + ++FN +  RD+V WN +++AYA  G+  E
Sbjct: 508 YILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKE 567

Query: 417 ASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTL 474
           A   F  MQ   G+ P+  ++ +V+      G +++   +F  M    G +P     + +
Sbjct: 568 AVHFFKAMQDSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLSCI 627

Query: 475 ISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           +  L +     EA    + ++ +  +K  ++      SAC    +LR GR + G+L+  +
Sbjct: 628 VDLLGRAGYLEEA----ERLINSKHLKIVSSIWWTLFSACAAHGNLRLGRIVAGFLLEIE 683

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563
              P   V  L ++YA  G   +A    D+
Sbjct: 684 QNDPAVYVL-LSNIYAAAGQWEEAANTRDL 712



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 32/180 (17%)

Query: 468 LITWTTLISGLTQNSCGNEAI-LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
           LI    L++ LT++   + ++ LF Q      +KP   T++  L+AC ++    +G  +H
Sbjct: 17  LIKINQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLH 76

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV-------------------------- 560
            Y I+  L   T +  +L+  YAK  ++   +RV                          
Sbjct: 77  AYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIG 136

Query: 561 -----FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
                F+ +P     V+NA+I+G A +     AL LF+ + Q G+  D  TF ++L+ CS
Sbjct: 137 YACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCS 196


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  318 bits (815), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 183/568 (32%), Positives = 310/568 (54%), Gaps = 30/568 (5%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCG-DLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           + +H Y +  G   C +  S ++  Y     DL  A KVFD + A     WN +I G  Q
Sbjct: 5   KRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQ 64

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +    +AI  + +    G+ P  ++   IL A A ++AL+EG+Q H      G+  D  +
Sbjct: 65  SDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFV 124

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA---------- 370
            +S+I+ Y+  G L  A  VF  MV +D+V+WN LI  Y Q  +   ++A          
Sbjct: 125 SNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGV 184

Query: 371 ----SSIVDMYAKCERIDN-------AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
                +++ + + C R+ +        + + +  I  DV L NTL+  +   G+   A +
Sbjct: 185 KADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEK 244

Query: 420 LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           +F+ M++     NI++ N++I  + +   +  A+ +F Q+     + +LI+W+++ISG +
Sbjct: 245 VFFNMKVR----NIVTMNAMIAAYAKGQDIVSARKIFDQIP----KKDLISWSSMISGYS 296

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           Q +  ++A+  F++M    +KP    I   +S+C  + +L  G+ +H Y+ R+++   T 
Sbjct: 297 QANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTI 356

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           +  SL+DMY KCG+  +A +VF     K+   +N++I G A +G   E+L LF+ +  +G
Sbjct: 357 MENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEG 416

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
             P+ +TF  +L AC++A LV EGL+ F  M   + ++P M+H+GCVV+LL R G L++A
Sbjct: 417 FRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKA 476

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
           LR I  MP DPD  +   LL +C    +  +AE +++ L +LEP N GNY  LSNAYA++
Sbjct: 477 LRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASA 536

Query: 720 GRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
            RW+E   VR  M +  +RK+PGCS ++
Sbjct: 537 HRWSEAMNVRQCMADTDVRKSPGCSAVE 564



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 151/582 (25%), Positives = 273/582 (46%), Gaps = 70/582 (12%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDA-LDVASRLFCRLRVKNVFSWAAIIGLN 157
           +++HA  + +G +     Y  +K++  YA     L  A ++F ++     F W  +I   
Sbjct: 5   KRLHAYYIVSGLY--NCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGL 62

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            +      A+  + + Q  G+ PDN   P +LKAC  +  +  G  +H ++ K+G    +
Sbjct: 63  AQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDI 122

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           FV++SLI +Y  CG+L  AR VFD M+ ++VV+WNS+I GY Q    ++ + +F  M  E
Sbjct: 123 FVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNE 182

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVING--MELDNVLGSSIINFYSKVGLLE 335
           GV+  +V++  ++SA   L   D     + V  I    +E+D  LG+++++++ + G L+
Sbjct: 183 GVKADKVTMIKVVSACTRLG--DYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 240

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
            AE VF  M  R+IVT N +IA+                  YAK + I +A+++F+ I  
Sbjct: 241 SAEKVFFNMKVRNIVTMNAMIAA------------------YAKGQDIVSARKIFDQIPK 282

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII------------------SW- 436
           +D++ W+++++ Y+      +A  +F QMQ   + P+ I                   W 
Sbjct: 283 KDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWV 342

Query: 437 ----------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
                           NS+I  +++ G   EA  +F +M+    + + ++W ++I GL  
Sbjct: 343 HEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMK----EKDTLSWNSIIIGLAN 398

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-HDLCLPTP 539
           N    E++  FQ ML  G +P+  T    L AC +   +  G      + R + L     
Sbjct: 399 NGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMK 458

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELP-VYNAMISGYAMHGLAVEALALFKNLQQK 598
               +VD+  + G + +A R     P    P V+  ++     HG    A  + K L + 
Sbjct: 459 HYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNE- 517

Query: 599 GIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
            ++P +S  +T + NA + A   +E + +   M +D  V+ S
Sbjct: 518 -LEPSNSGNYTLLSNAYASAHRWSEAMNVRQCM-ADTDVRKS 557


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  318 bits (815), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 192/638 (30%), Positives = 313/638 (49%), Gaps = 92/638 (14%)

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           + SL+      G ++EA +    +   +    N MI G+   GL   A+  +  M  +G 
Sbjct: 44  SKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGA 103

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P R +   ++   A L  LDEG+ AH + +  G+E D    +S++ FY+K+GL+EDAE 
Sbjct: 104 RPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAER 163

Query: 340 VFSRMVERDIVTWNLLIASYVQSG------------------------------------ 363
           VF  M  RDIVTWN ++  YV +G                                    
Sbjct: 164 VFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEV 223

Query: 364 -----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                            + D+ V +S++DMY KC  +  A+ VF ++ LR VV WN ++ 
Sbjct: 224 SSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIG 283

Query: 407 AYADLGRSGEASRLFYQMQLEGIS-----------------------------------P 431
            YA   R  EA   F QM+ EG+                                    P
Sbjct: 284 GYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLP 343

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           +++   +++  + + G++  ++ +F ++        L++W  +I+         EAI  F
Sbjct: 344 HVVLETALLEMYGKVGKVESSEKIFGKI----ANKTLVSWNNMIAAYMYKEMYTEAITLF 399

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
            E+L   + P   T++  + A   + SLR+ R IH Y+I       T I+ +++ MYA+ 
Sbjct: 400 LELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARS 459

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G++  ++ +FD   SK++  +N MI GYA+HG    AL +F  ++  G+ P+  TF ++L
Sbjct: 460 GDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVL 519

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
            ACS +GLV+EG   F  M  ++ + P +EH+GC+ +LL R G+L E L+ I +MP DP 
Sbjct: 520 TACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPT 579

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
           + + GSLL+     N+ ++AEY +E + QLE DN G Y+ LS+ YA +GRW +V +VR +
Sbjct: 580 SRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLL 639

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
           MKEKGLR+    S +++      F   D SH ++  I+
Sbjct: 640 MKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIH 677



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 216/434 (49%), Gaps = 29/434 (6%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+  H  ++K G     + Y    LV FYAK   ++ A R+F  + V+++ +W  ++   
Sbjct: 126 GRAAHGMVIKLG--LEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGY 183

Query: 158 CRVGLSEKALIGFVEMQED-GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
              GL   AL  F EM +   V  D+  +   L AC        G+ +HGYV++ G +  
Sbjct: 184 VSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQD 243

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           + V +SL+DMY KCG++  AR VF  M  R VV WN MI GY  N   +EA   F +M  
Sbjct: 244 IKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRA 303

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           EG++   V+  ++L+A A  ++   G+  H   V        VL ++++  Y KVG +E 
Sbjct: 304 EGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVES 363

Query: 337 AEVVFSRMVERDIVTWNLLIASYV-----------------QSGQSDVVVASSIVDMYAK 379
           +E +F ++  + +V+WN +IA+Y+                 Q    D    S++V  +  
Sbjct: 364 SEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVL 423

Query: 380 CERIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435
              + + +Q+ + II      + ++ N +L  YA  G    +  +F +M    +S ++IS
Sbjct: 424 LGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKM----VSKDVIS 479

Query: 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
           WN++I+G+  +GQ   A +MF +M+  G+QPN  T+ ++++  + +   +E  + F  ML
Sbjct: 480 WNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLML 539

Query: 496 -ETGIKPSTTTITC 508
            E G+ P      C
Sbjct: 540 QEYGMIPQIEHYGC 553



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 126/241 (52%), Gaps = 2/241 (0%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           EA D   +M+    Q+       LL  C        G+ +H  +++    F  +  +ET 
Sbjct: 293 EAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQ--FLPHVVLETA 350

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPD 181
           L+  Y K   ++ + ++F ++  K + SW  +I       +  +A+  F+E+    + PD
Sbjct: 351 LLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPD 410

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
            F +  V+ A   LG +   R +H Y++ +G+     + ++++ MY + GD+  +R++FD
Sbjct: 411 YFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFD 470

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M++++V++WN+MI+GY  +G  + A+ +F EM   G++P   +  S+L+A +    +DE
Sbjct: 471 KMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDE 530

Query: 302 G 302
           G
Sbjct: 531 G 531


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  318 bits (815), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 193/604 (31%), Positives = 307/604 (50%), Gaps = 61/604 (10%)

Query: 178 VSPDNFVLPNVLKACGAL----GWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
           VSP N VL  VL+  G +      +   + VH  V  + F     +   L+  Y   G+ 
Sbjct: 26  VSPQNPVL--VLELLGKVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEP 83

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293
             AR VFD +  RNV+ +N MI  Y+ N L ++A+ VF +M   G  P   +   +L A 
Sbjct: 84  GLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKAC 143

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
           +  D L  G Q H                       KVGL                    
Sbjct: 144 SCSDNLRIGLQLHGAVF-------------------KVGL-------------------- 164

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                       ++ V + ++ +Y KC  +  A+ V + +  +DVV WN+++A YA   +
Sbjct: 165 ----------DLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQ 214

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN--EAKDMFLQMQSLGVQPNLITW 471
             +A  +  +M      P+  +  S++         N    ++MF+ ++    + +L++W
Sbjct: 215 FDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLE----KKSLVSW 270

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
             +IS   +NS   +++  + +M +  ++P   T    L AC D+++L  GR IH Y+ R
Sbjct: 271 NVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVER 330

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
             LC    +  SL+DMYA+CG +  AKRVFD    +++  + ++IS Y M G    A+AL
Sbjct: 331 KKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVAL 390

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  +Q  G  PDSI F  IL+ACSH+GL+NEG   F  M  D+++ P +EHF C+V+LL 
Sbjct: 391 FTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLG 450

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G +DEA  +I  MP  P+  + G+LLS+C   +  ++    ++ LLQL P+  G YV 
Sbjct: 451 RSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVL 510

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771
           LSN YA +GRW EV+ +R +MK + +RK PG S +++  ++H F+A D  HP+++EIY  
Sbjct: 511 LSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEE 570

Query: 772 LALL 775
           L++L
Sbjct: 571 LSVL 574



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/440 (29%), Positives = 222/440 (50%), Gaps = 25/440 (5%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D+ T + +H+++      F  N  +  KL+  YA      +A  +F  +  +NV  +  +
Sbjct: 47  DIKTLKNVHSKVFNLS--FHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVM 104

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I       L + AL+ F +M   G SPD++  P VLKAC     +  G  +HG V KVG 
Sbjct: 105 IRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGL 164

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
           D  +FV + LI +YGKCG L EAR V D M +++VV+WNSM+ GY QN   ++A+ +  E
Sbjct: 165 DLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICRE 224

Query: 274 MTLEGVEPTRVSVTSILSASANLDALD-----------EGKQAHAVAVINGMELDNVLGS 322
           M     +P   ++ S+L A  N  + +           E K   +  V+  + + N +  
Sbjct: 225 MDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPG 284

Query: 323 SIINFYSKVGLLE-DAEVVFSRMVERDIVTWNLL-----IASYVQSGQ--SDVVVASSIV 374
             ++ Y ++G  E + + +    V R     + L     I  YV+  +   ++++ +S++
Sbjct: 285 KSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLI 344

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
           DMYA+C  +++AK+VF+ +  RDV  W +L++AY   G+   A  LF +MQ  G SP+ I
Sbjct: 345 DMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSI 404

Query: 435 SWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
           ++ +++     +G +NE K  F QM     + P +  +  L+  L ++   +EA    ++
Sbjct: 405 AFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQ 464

Query: 494 MLETGIKPSTTTITCALSAC 513
           M    +KP+       LS+C
Sbjct: 465 M---PMKPNERVWGALLSSC 481


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  318 bits (815), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 193/660 (29%), Positives = 317/660 (48%), Gaps = 88/660 (13%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKC--GDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
            H    K G    ++VA++++  Y KC  GDL  A K+FD M  ++ V WN+MI GYV++
Sbjct: 21  THCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVES 80

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
           G    A      M   G +    +  SIL   A+    D G+Q H++ V  G E     G
Sbjct: 81  GNLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAG 140

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVV------------- 368
           S++++ Y+K   +EDA  VF  M  R+ V+WN LI  +VQ G  D               
Sbjct: 141 SALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVR 200

Query: 369 ---------------------------------------VASSIVDMYAKCERIDNAKQV 389
                                                  + ++ +  Y++C  +++AK+V
Sbjct: 201 VEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRV 260

Query: 390 FNSII-LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           F+  +  RD+V WN++L AY    +  +A  LF +MQ  G  P+I ++  VI        
Sbjct: 261 FDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAH 320

Query: 449 MNEAKD----------------------MFLQMQSLGVQPNL-----------ITWTTLI 475
            N  K                       M+L++ +  ++  L           ++W +++
Sbjct: 321 KNYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSIL 380

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           +G +Q     +A+  F  M  +  +      +  L +C+D+A L+ G+ IH   ++    
Sbjct: 381 TGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFD 440

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
               + +SL+ MY+KCG I  A + F+ +  +    +N+++  YA HG    AL LF  +
Sbjct: 441 SNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIM 500

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           +++ +  D +TF  +L ACSH GLV +G  +   M SD+ + P MEH+ C V+L  R G 
Sbjct: 501 REREVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGY 560

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           L+EA  +I +MP  P+A ++ +LL  C      ELA  ++  LL++EP+    YV LSN 
Sbjct: 561 LEEAKALIDSMPFQPNAMVLKTLLGACRACGNIELAAQVASQLLEVEPEEHCTYVILSNM 620

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           Y    RW++ + V  +M+E+ ++K PG SWI++  E+H F A DRSHP +E++Y  L  L
Sbjct: 621 YGHLKRWDDKASVTRLMRERKVKKVPGWSWIEVKNEVHAFKAEDRSHPYSEDVYQILGEL 680



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 125/507 (24%), Positives = 226/507 (44%), Gaps = 61/507 (12%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           A + L  MK R FQ     +G +L+G  +      GQQ+H+ I+K G  + ++ Y  + L
Sbjct: 86  AWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIG--YEQSVYAGSAL 143

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  YAKC+ ++ A  +F  + V+N  SW A+I    +VG  + A      MQ++GV  ++
Sbjct: 144 LDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVED 203

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
                +L       +      +H  ++K G +    + ++ +  Y +CG LE+A++VFDG
Sbjct: 204 GTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDG 263

Query: 243 MIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            +  R++V WNSM+V Y+ +  +E+A  +F EM   G EP   + T ++SA       + 
Sbjct: 264 AVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNY 323

Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVG--LLEDAEVVFSRMVERDIVTWNLLIASY 359
           GK  HA+ +  G+E    + +++I  Y K+    +E A  +F  M  +D V+WN ++  +
Sbjct: 324 GKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGF 383

Query: 360 VQSG----------------------------------------------------QSDV 367
            Q G                                                     S+ 
Sbjct: 384 SQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSND 443

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
            VASS++ MY+KC  I++A + F        + WN+++ AYA  G+   A  LF  M+  
Sbjct: 444 FVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMRER 503

Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNE 486
            +  + +++ +V+      G + + + +   M+S  G+ P +  +   +    +     E
Sbjct: 504 EVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEE 563

Query: 487 AILFFQEMLETGIKPSTTTITCALSAC 513
           A      M     +P+   +   L AC
Sbjct: 564 AKALIDSM---PFQPNAMVLKTLLGAC 587



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 144/292 (49%), Gaps = 15/292 (5%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
            +A +L  EM+   F+     Y  ++  C        G+  HA ++K G     +  +  
Sbjct: 287 EDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRG--LEESVTICN 344

Query: 121 KLVVFYAKCD--ALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
            L+  Y K +  +++ A  LF  ++ K+  SW +I+    ++G SE AL  F  M+    
Sbjct: 345 ALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLE 404

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
             D++    VL++C  L  +  G+ +H   +K GFD   FVASSLI MY KCG +E+A K
Sbjct: 405 EIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWK 464

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
            F+     + + WNS++  Y Q+G  + A+ +F  M    V+   V+  ++L+A +++  
Sbjct: 465 CFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGL 524

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSI------INFYSKVGLLEDAEVVFSRM 344
           +++G+      V+  ME D  +   +      ++ + + G LE+A+ +   M
Sbjct: 525 VEQGR-----CVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSM 571


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  318 bits (815), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 185/574 (32%), Positives = 299/574 (52%), Gaps = 61/574 (10%)

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGK--CGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           +H  VL+ G     +V+ +L+  Y      + + A KVF  +   NV  WN +I G ++N
Sbjct: 52  LHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLEN 111

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
               +AI  +  M ++   P + +  ++  A +   A+ EG+Q H   V +G+       
Sbjct: 112 NKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGI------- 163

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
                                                      SDV + S+ + MYA   
Sbjct: 164 ------------------------------------------GSDVHIKSAGIQMYASFG 181

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           R+++A+++F S    DVV WNT++  Y   G    A  LF QM ++    NI SWN +I 
Sbjct: 182 RLEDARKMFYSG-ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVK----NIGSWNVMIN 236

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
           G  + G + +A+ +F +M     + + I+W++++ G        EA+  FQ+M     +P
Sbjct: 237 GLAKGGNLGDARKLFDEMS----ERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRP 292

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
               ++  L+AC+++ ++  GR +H YL R+ + L   + T+L+DMYAKCG +     VF
Sbjct: 293 GRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVF 352

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
           +    +E+  +NAMI G A+HG A +AL LF  LQ+  + P+ IT   +L AC+HAG V+
Sbjct: 353 EEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVD 412

Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681
           +GL +F  M   + V P +EH+GC+V+LL R G   EA  +I +MP  P+A + G+LL  
Sbjct: 413 KGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGA 472

Query: 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           C      +LAE + + LL+LEP N G YV LSN YA  GR+++VS++R +MK +G++  P
Sbjct: 473 CRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVP 532

Query: 742 GCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           G S + +   +H F   D SHP+ +EIY  L ++
Sbjct: 533 GVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKII 566



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 198/440 (45%), Gaps = 84/440 (19%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAK--CDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           Q+HA +L++G F  ++ YV   L+  YA       D A ++F  +   NVF W  +I   
Sbjct: 51  QLHALVLRSGHF--QDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGC 108

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
                  KA+  +  M  D   P+ F  P + KAC     V  GR +HG+V+K G    V
Sbjct: 109 LENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDV 167

Query: 218 FVASSLIDMYGKCGDLEEARKVF--------------DG----------------MIARN 247
            + S+ I MY   G LE+ARK+F              DG                M  +N
Sbjct: 168 HIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKN 227

Query: 248 VVAWN-------------------------------SMIVGYVQNGLNEEAIRVFYEMTL 276
           + +WN                               SM+ GY+  G  +EA+ +F +M  
Sbjct: 228 IGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQR 287

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           E   P R  ++S+L+A +N+ A+D+G+  HA    N ++LD VLG+++++ Y+K G L+ 
Sbjct: 288 EETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDM 347

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
              VF  M ER+I TWN +I      G+     A   +++++K   +   +   N I L 
Sbjct: 348 GWEVFEEMKEREIFTWNAMIGGLAIHGR-----AEDALELFSK---LQEGRMKPNGITLV 399

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
            V      L A A  G   +  R+F  M +  G+ P +  +  ++    R+G  +EA+D+
Sbjct: 400 GV------LTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDL 453

Query: 456 FLQMQSLGVQPNLITWTTLI 475
              + S+ ++PN   W  L+
Sbjct: 454 ---INSMPMKPNAAVWGALL 470



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/445 (22%), Positives = 193/445 (43%), Gaps = 81/445 (18%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNG------------DFFARNEYVETKLVVFYA-- 127
           Y  L + C   + +  G+QIH  ++K+G              +A    +E    +FY+  
Sbjct: 135 YPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGE 194

Query: 128 --------------KCDALDVASRLFCRLRVKNV-------------------------- 147
                         KC  L+ A  LF ++ VKN+                          
Sbjct: 195 SDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEM 254

Query: 148 -----FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
                 SW++++      G  ++AL  F +MQ +   P  F+L +VL AC  +G +  GR
Sbjct: 255 SERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGR 314

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            VH Y+ +        + ++L+DMY KCG L+   +VF+ M  R +  WN+MI G   +G
Sbjct: 315 WVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHG 374

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVLG 321
             E+A+ +F ++    ++P  +++  +L+A A+   +D+G +    +    G++ +    
Sbjct: 375 RAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHY 434

Query: 322 SSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
             +++   + GL  +AE + + M ++ +   W  L+ +    G  D  +A  +  +  + 
Sbjct: 435 GCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFD--LAERVGKILLEL 492

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP----NIISW 436
           E  ++ + V  S I             YA +GR  + S++   M+  GI      +I+  
Sbjct: 493 EPQNSGRYVLLSNI-------------YAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDL 539

Query: 437 NSVILGF-LRNGQMNEAKDMFLQMQ 460
           N  +  F + +G   + K+++ +++
Sbjct: 540 NGTVHEFKMGDGSHPQMKEIYRKLK 564



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 16/205 (7%)

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           + +EA+++  +M+    + G  I   +L  C     +  G+ +HA + +N      +  +
Sbjct: 274 RYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNS--IKLDAVL 331

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
            T L+  YAKC  LD+   +F  ++ + +F+W A+IG     G +E AL  F ++QE  +
Sbjct: 332 GTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRM 391

Query: 179 SPDNFVLPNVLKACGALGWVGFG-------RAVHGYVLKVGFDGCVFVASSLIDMYGKCG 231
            P+   L  VL AC   G+V  G       R  +G   ++   GC      ++D+ G+ G
Sbjct: 392 KPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGC------MVDLLGRSG 445

Query: 232 DLEEARKVFDGMIAR-NVVAWNSMI 255
              EA  + + M  + N   W +++
Sbjct: 446 LFSEAEDLINSMPMKPNAAVWGALL 470


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  318 bits (815), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 189/646 (29%), Positives = 325/646 (50%), Gaps = 98/646 (15%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG---VEPTRVS 285
           K   L++AR +FD +  R+ V+W ++I GYV +  + EA+R+F +M L+    ++P  +S
Sbjct: 61  KTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLS 120

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           +  + +    L+ L  G   H  +V  G+     +GS++++ Y K+G +  +  VF  M 
Sbjct: 121 L-GLKTCGLGLNYL-YGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMP 178

Query: 346 ERDIVTWNLLIASYVQSGQSDV-------------------------------------- 367
            R+ VTW  +I   V++G S+                                       
Sbjct: 179 TRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRS 238

Query: 368 --------------VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                          VA+S+  MY KC ++D     F  +   DVV W T++ AY  +G+
Sbjct: 239 IHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGK 298

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVI---------------------LGFL-------- 444
                + F +M+   + PN  ++++VI                     +GF+        
Sbjct: 299 EDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANS 358

Query: 445 ------RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
                 + G++     +F  M+      ++ITW+T+I+  +Q   G EA  +   M   G
Sbjct: 359 IMTLYSKCGELASVSKVFCSMKF----RDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEG 414

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
            KP+   +   LS C  +A L  G+ +H +++   L   + + ++L+ MYAKCG+I +A 
Sbjct: 415 PKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEAS 474

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           ++F  S   ++  + AMISGYA HG + EA+ LF+N+Q+ G+ PDS+TF  +L ACSHAG
Sbjct: 475 KIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAG 534

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           +V+ G   F  M  D+ + PS EH+GC+++LL R G L +A  +I +MP   D  +  +L
Sbjct: 535 MVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTL 594

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           L  C    + +  +  +  +L+L+P+  G ++ L+N +AA G+W E + +R +MK KG+ 
Sbjct: 595 LRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVV 654

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL--GMHVRLV 782
           K PG S +++ + +  FV+ DRSHP+ E+IY  L  L  GM + ++
Sbjct: 655 KEPGWSSVKVKDSVFAFVSGDRSHPQGEDIYNILEELASGMEIYIL 700



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 155/619 (25%), Positives = 256/619 (41%), Gaps = 129/619 (20%)

Query: 8   TPPNPKFSHTKPQK-PLKLSQTHLTKLRESDNSYESLYK--------------------S 46
           T  NP+  +TKP    L    ++   L E++N  + L K                    S
Sbjct: 23  TNDNPRHLYTKPLSLTLNAHFSNKVDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVS 82

Query: 47  YFHQISSLSKEKQIREAVDLLTEMKCRN-FQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           + + IS         EA+ L ++M+ ++  +I P +    L+ C    +   G  +H   
Sbjct: 83  WTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFS 142

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K G     + +V + L+  Y K   +  + ++F  +  +N  +W A+I    R G SE 
Sbjct: 143 VKXG--LVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEA 200

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
            L  F  M    V  D++     LKA    G +  GR++H   LK GFD   FVA+SL  
Sbjct: 201 GLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTT 260

Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
           MY KCG L+     F  M   +VV+W +++  Y+Q G  +  ++ F  M    V P   +
Sbjct: 261 MYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYT 320

Query: 286 VTSILSASANLDALDEGKQAHA----VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVF 341
            ++++S  AN   L  G+Q HA    V  +N + + N    SI+  YSK G L     VF
Sbjct: 321 FSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVAN----SIMTLYSKCGELASVSKVF 376

Query: 342 SRMVERDIVTWNLLIASYVQSG-------------------------------------- 363
             M  RDI+TW+ +IA+Y Q G                                      
Sbjct: 377 CSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILE 436

Query: 364 --------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
                         +   +V S+++ MYAKC  I  A ++F      D++ W  +++ YA
Sbjct: 437 QGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYA 496

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVI----------LGFL--------------- 444
           + G S EA  LF  +Q  G+ P+ +++  V+          LGF                
Sbjct: 497 EHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSK 556

Query: 445 -----------RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN---SCGNEAILF 490
                      R G++++A+ +   ++S+ +Q + + W+TL+     +    CG  A   
Sbjct: 557 EHYGCMIDLLCRAGRLHDAETL---IRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAA-- 611

Query: 491 FQEMLETGIKPSTTTITCA 509
             E+L+     + T IT A
Sbjct: 612 -AEVLKLDPNCAGTHITLA 629


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  318 bits (815), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 183/568 (32%), Positives = 310/568 (54%), Gaps = 30/568 (5%)

Query: 202  RAVHGYVLKVGFDGCVFVASSLIDMYGKCG-DLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
            + +H Y +  G   C +  S ++  Y     DL  A KVFD + A     WN +I G  Q
Sbjct: 470  KRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQ 529

Query: 261  NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            +    +AI  + +    G+ P  ++   IL A A ++AL+EG+Q H      G+  D  +
Sbjct: 530  SDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFV 589

Query: 321  GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA---------- 370
             +S+I+ Y+  G L  A  VF  MV +D+V+WN LI  Y Q  +   ++A          
Sbjct: 590  SNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGV 649

Query: 371  ----SSIVDMYAKCERIDN-------AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
                 +++ + + C R+ +        + + +  I  DV L NTL+  +   G+   A +
Sbjct: 650  KADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEK 709

Query: 420  LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
            +F+ M++     NI++ N++I  + +   +  A+ +F Q+     + +LI+W+++ISG +
Sbjct: 710  VFFNMKVR----NIVTMNAMIAAYAKGQDIVSARKIFDQIP----KKDLISWSSMISGYS 761

Query: 480  QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
            Q +  ++A+  F++M    +KP    I   +S+C  + +L  G+ +H Y+ R+++   T 
Sbjct: 762  QANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTI 821

Query: 540  IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
            +  SL+DMY KCG+  +A +VF     K+   +N++I G A +G   E+L LF+ +  +G
Sbjct: 822  MENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEG 881

Query: 600  IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
              P+ +TF  +L AC++A LV EGL+ F  M   + ++P M+H+GCVV+LL R G L++A
Sbjct: 882  FRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKA 941

Query: 660  LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
            LR I  MP DPD  +   LL +C    +  +AE +++ L +LEP N GNY  LSNAYA++
Sbjct: 942  LRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASA 1001

Query: 720  GRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
             RW+E   VR  M +  +RK+PGCS ++
Sbjct: 1002 HRWSEAMNVRQCMADTDVRKSPGCSAVE 1029



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 182/305 (59%), Gaps = 5/305 (1%)

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           N +SWN VI GF   G++  A+ +F +M       N+++W+ +I G T+     EA+  F
Sbjct: 154 NAVSWNVVITGFAGWGEVEYARLLFERMPC----RNVVSWSGMIDGYTRACRPVEAVALF 209

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
           + M+  GI PS  T+   + A ++V  +  G A+HGY  +  L     +  SL+D+YAK 
Sbjct: 210 RRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKI 269

Query: 552 GNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           G+I  + RVFD +   + L  + ++ISG+AMHGL+V+A+ LF ++++ GI P+ ITF ++
Sbjct: 270 GSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSV 329

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L+ACSH GLV +G+  F  M  ++ + P ++HFGC++++L R G L EA ++I   P + 
Sbjct: 330 LHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEV 389

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
           +A +  +LL  C K  E E+ E   + +L LE +  G++V LSN      R+++   VR 
Sbjct: 390 NATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRK 449

Query: 731 IMKEK 735
           ++ ++
Sbjct: 450 LVDQR 454



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 159/626 (25%), Positives = 277/626 (44%), Gaps = 80/626 (12%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCDAL--------------------------- 132
           Q+H  +++ G  F    YV T LV  Y  C  L                           
Sbjct: 110 QLHGLVVRKG--FEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAG 167

Query: 133 ----DVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188
               + A  LF R+  +NV SW+ +I    R     +A+  F  M  +G+SP    +  V
Sbjct: 168 WGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAV 227

Query: 189 LKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI-ARN 247
           + A   +G +  G A+HGY  K G    V V +SLID+Y K G ++ + +VFD M+  RN
Sbjct: 228 VPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRN 287

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           +V+W S+I G+  +GL+ +A+ +F +M   G+ P R++  S+L A ++   +++G     
Sbjct: 288 LVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQG----- 342

Query: 308 VAVINGMELDNVLGSS------IINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYV 360
           VA    M  +  +         II+   + G L +AE +     VE +   W  L+    
Sbjct: 343 VAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCS 402

Query: 361 QSGQ-------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
           + G+                    D VV S   +M  +  R  +A+      I+R +V  
Sbjct: 403 KYGEVEMGERTMKKILALEREFGGDFVVLS---NMLTELRRFSDAE------IVRKLVDQ 453

Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF-LRNGQMNEAKDMFLQMQ 460
              + ++ ++ R     RL     + G+     + + V+  + +    +  A  +F Q++
Sbjct: 454 RNSVKSFFNIVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIE 513

Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
           +    P    W  LI GL Q+    +AI F+++    G+ P   T    L AC  + +L 
Sbjct: 514 A----PTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALN 569

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            G  +H ++ +  L     +  SL+ +YA CGN+  A+ VFD    K++  +N++I GY+
Sbjct: 570 EGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYS 629

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
                 + LALFK +Q +G+  D +T   +++AC+  G  +   +  V    D+ ++  +
Sbjct: 630 QCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMA-DYMVRYIEDYCIEVDV 688

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTM 666
                +V+   R G L  A +V   M
Sbjct: 689 YLGNTLVDYFGRRGQLQSAEKVFFNM 714



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 151/582 (25%), Positives = 273/582 (46%), Gaps = 70/582 (12%)

Query: 99   QQIHARILKNGDFFARNEYVETKLVVFYAKCDA-LDVASRLFCRLRVKNVFSWAAIIGLN 157
            +++HA  + +G +     Y  +K++  YA     L  A ++F ++     F W  +I   
Sbjct: 470  KRLHAYYIVSGLY--NCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGL 527

Query: 158  CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
             +      A+  + + Q  G+ PDN   P +LKAC  +  +  G  +H ++ K+G    +
Sbjct: 528  AQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDI 587

Query: 218  FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            FV++SLI +Y  CG+L  AR VFD M+ ++VV+WNS+I GY Q    ++ + +F  M  E
Sbjct: 588  FVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNE 647

Query: 278  GVEPTRVSVTSILSASANLDALDEGKQAHAVAVING--MELDNVLGSSIINFYSKVGLLE 335
            GV+  +V++  ++SA   L   D     + V  I    +E+D  LG+++++++ + G L+
Sbjct: 648  GVKADKVTMIKVVSACTRLG--DYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 705

Query: 336  DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
             AE VF  M  R+IVT N +IA+                  YAK + I +A+++F+ I  
Sbjct: 706  SAEKVFFNMKVRNIVTMNAMIAA------------------YAKGQDIVSARKIFDQIPK 747

Query: 396  RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII------------------SW- 436
            +D++ W+++++ Y+      +A  +F QMQ   + P+ I                   W 
Sbjct: 748  KDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWV 807

Query: 437  ----------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
                            NS+I  +++ G   EA  +F +M+    + + ++W ++I GL  
Sbjct: 808  HEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMK----EKDTLSWNSIIIGLAN 863

Query: 481  NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-HDLCLPTP 539
            N    E++  FQ ML  G +P+  T    L AC +   +  G      + R + L     
Sbjct: 864  NGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMK 923

Query: 540  IVTSLVDMYAKCGNIHQAKRVFDISPSKELP-VYNAMISGYAMHGLAVEALALFKNLQQK 598
                +VD+  + G + +A R     P    P V+  ++     HG    A  + K L + 
Sbjct: 924  HYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNE- 982

Query: 599  GIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
             ++P +S  +T + NA + A   +E + +   M +D  V+ S
Sbjct: 983  -LEPSNSGNYTLLSNAYASAHRWSEAMNVRQCM-ADTDVRKS 1022



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 133/543 (24%), Positives = 241/543 (44%), Gaps = 90/543 (16%)

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC-------- 230
           + D +     LKAC  LGW      +HG V++ GF+   +V ++L+++Y  C        
Sbjct: 86  ADDTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRM 145

Query: 231 -----------------------GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267
                                  G++E AR +F+ M  RNVV+W+ MI GY +     EA
Sbjct: 146 AFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEA 205

Query: 268 IRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327
           + +F  M  EG+ P+ ++V +++ A +N+  +  G+  H      G+  D  +G+S+I+ 
Sbjct: 206 VALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDL 265

Query: 328 YSKVGLLEDAEVVFSRMVE-RDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNA 386
           Y+K+G ++++  VF  M++ R++V+W  +I+ +   G S        V+++A   R    
Sbjct: 266 YAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLS-----VKAVELFADMRRAG-- 318

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLR 445
                  I  + + + ++L A +  G   +    F  M  E  I+P++  +  +I    R
Sbjct: 319 -------IRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGR 371

Query: 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTL-------------------ISGLTQNSCGNE 486
            G++ EA+ +   ++   V+ N   W TL                   I  L +   G+ 
Sbjct: 372 AGRLREAEQI---IRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDF 428

Query: 487 AILFFQEMLETGIKPSTTTITCAL-------SACTDVASLRNGRAIHGYLIRHDLCLPTP 539
            +L    ML    + S   I   L        +  ++  +   + +H Y I   L     
Sbjct: 429 VVL--SNMLTELRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAIKRLHAYYIVSGLYNCHY 486

Query: 540 IVTSLVDMYAKCG-NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            ++ ++  YA    ++  A +VFD   +    ++N +I G A      +A+A +K  Q  
Sbjct: 487 AMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGG 546

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRC 653
           G+ PD++TF  IL AC+    +NEG ++      +G+ SD  V  S+ H      L + C
Sbjct: 547 GMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIH------LYAAC 600

Query: 654 GNL 656
           GNL
Sbjct: 601 GNL 603



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 45/258 (17%)

Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
           R  Q+ +     +  Q    +P    W  L+   +      +A+  F+          T 
Sbjct: 34  RRRQLLQIHSQLIAHQVFDRRPT--PWHALLKAYSHGPHPQDALQLFRHA-RWHAADDTY 90

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
             T AL AC  +   R    +HG ++R      T + T+LV++Y  CG +  ++  F+  
Sbjct: 91  AFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEM 150

Query: 565 PSKELPVYNAMISGYAMHG-------------------------------LAVEALALFK 593
           P K    +N +I+G+A  G                                 VEA+ALF+
Sbjct: 151 PVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFR 210

Query: 594 NLQQKGIDPDSITFTNILNACSHAG--LVNEGLELFV---GMFSDHQVKPSMEHFGCVVN 648
            +  +GI P  IT   ++ A S+ G  L+ E L  +    G+  D +V  S+      ++
Sbjct: 211 RMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSL------ID 264

Query: 649 LLSRCGNLDEALRVILTM 666
           L ++ G++  +LRV   M
Sbjct: 265 LYAKIGSIQNSLRVFDEM 282


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 186/584 (31%), Positives = 286/584 (48%), Gaps = 92/584 (15%)

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A KVFD M  RN+V W  MI  + Q G   +AI +F +M L G  P R + +S+LSA   
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L  L  GKQ H+  +  G+ L                                       
Sbjct: 64  LGLLALGKQLHSRVIRLGLAL--------------------------------------- 84

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCE---RIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                     DV V  S+VDMYAKC     +D++++VF  +   +V+ W  ++ AYA  G
Sbjct: 85  ----------DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSG 134

Query: 413 R-SGEASRLFYQMQLEGISPNIISW----------------------------------- 436
               EA  LF +M    I PN  S+                                   
Sbjct: 135 ECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVG 194

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           NS+I  + R+G+M +A+  F     +  + NL+++  ++ G  +N    EA L F E+ +
Sbjct: 195 NSLISMYARSGRMEDARKAF----DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIAD 250

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
           TGI  S  T    LS    + ++  G  IHG L++        I  +L+ MY++CGNI  
Sbjct: 251 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 310

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A +VF+    + +  + +MI+G+A HG A  AL +F  + + G  P+ IT+  +L+ACSH
Sbjct: 311 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 370

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            G+++EG + F  M+ +H + P MEH+ C+V+LL R G L EA+  I +MP   DA +  
Sbjct: 371 VGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWR 430

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +LL  C     TEL  + +E +L+ EPD+P  Y+ LSN +A++G+W +V ++R  MKE+ 
Sbjct: 431 TLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERN 490

Query: 737 LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           L K  GCSWI++   +H F   + SHP+  +IY  L  L   ++
Sbjct: 491 LIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIK 534



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 139/492 (28%), Positives = 249/492 (50%), Gaps = 37/492 (7%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A ++F ++  +N+ +W  +I    ++G +  A+  F++M+  G  PD F   +VL AC  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC---GDLEEARKVFDGMIARNVVAW 251
           LG +  G+ +H  V+++G    V V  SL+DMY KC   G ++++RKVF+ M   NV++W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 252 NSMIVGYVQNG-LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
            ++I  Y Q+G  ++EAI +F +M    + P   S +S+L A  NL     G+Q ++ AV
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA 370
             G+   N +G+S+I+ Y++ G +EDA   F  + E+++V++N                 
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYN----------------- 226

Query: 371 SSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
            +IVD YAK  + + A  +FN I    I      + +LL+  A +G  G+  ++  ++  
Sbjct: 227 -AIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK 285

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
            G   N    N++I  + R G +  A  +F +M+      N+I+WT++I+G  ++     
Sbjct: 286 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEME----DRNVISWTSMITGFAKHGFATR 341

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-HDLCLPTPIVTSLV 545
           A+  F +MLETG KP+  T    LSAC+ V  +  G+     + + H +         +V
Sbjct: 342 ALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMV 401

Query: 546 DMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHG---LAVEALALFKNLQQKGID 601
           D+  + G + +A    +  P   +  V+  ++    +HG   L   A  +   L+Q+  D
Sbjct: 402 DLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI--LEQEPDD 459

Query: 602 PDSITFTNILNA 613
           P +    + L+A
Sbjct: 460 PAAYILLSNLHA 471



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 220/420 (52%), Gaps = 24/420 (5%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           R+A+DL  +M+   +      Y  +L  C     +  G+Q+H+R+++ G   A +  V  
Sbjct: 33  RDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG--LALDVCVGC 90

Query: 121 KLVVFYAKCDA---LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG-FVEMQED 176
            LV  YAKC A   +D + ++F ++   NV SW AII    + G  +K  I  F +M   
Sbjct: 91  SLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISG 150

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
            + P++F   +VLKACG L     G  V+ Y +K+G      V +SLI MY + G +E+A
Sbjct: 151 HIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA 210

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           RK FD +  +N+V++N+++ GY +N  +EEA  +F E+   G+  +  +  S+LS +A++
Sbjct: 211 RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASI 270

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            A+ +G+Q H   +  G + +  + +++I+ YS+ G +E A  VF+ M +R++++W  +I
Sbjct: 271 GAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMI 330

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
             + + G      A+  ++M+ K         +  +    + + +  +L+A + +G   E
Sbjct: 331 TGFAKHG-----FATRALEMFHK---------MLETGTKPNEITYVAVLSACSHVGMISE 376

Query: 417 ASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
             + F  M  E GI P +  +  ++    R+G + EA +    + S+ +  + + W TL+
Sbjct: 377 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEF---INSMPLMADALVWRTLL 433



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 143/315 (45%), Gaps = 29/315 (9%)

Query: 32  KLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQ 87
           ++ ++  +++ L++    SY   +   +K  +  EA  L  E+      I    +  LL 
Sbjct: 206 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 265

Query: 88  GCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV 147
           G      M  G+QIH R+LK G  +  N+ +   L+  Y++C  ++ A ++F  +  +NV
Sbjct: 266 GAASIGAMGKGEQIHGRLLKGG--YKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV 323

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR----- 202
            SW ++I    + G + +AL  F +M E G  P+      VL AC  +G +  G+     
Sbjct: 324 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNS 383

Query: 203 --AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYV 259
               HG V ++    C      ++D+ G+ G L EA +  + M +  + + W +++    
Sbjct: 384 MYKEHGIVPRMEHYAC------MVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 437

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
            +G N E  R   EM LE  EP   +   +LS   NL A   G+    V +   M+  N+
Sbjct: 438 VHG-NTELGRHAAEMILEQ-EPDDPAAYILLS---NLHA-SAGQWKDVVKIRKSMKERNL 491

Query: 320 L---GSSIINFYSKV 331
           +   G S I   ++V
Sbjct: 492 IKEAGCSWIEVENRV 506


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  318 bits (814), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 186/569 (32%), Positives = 308/569 (54%), Gaps = 30/569 (5%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYG-KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           + +H ++++       F+ S +I  Y     +L +A  VF+ +    +V WN MI G  Q
Sbjct: 34  KELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQ 93

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           +    EAI ++  M  +G+    +++  +  A A +  +  G++ H  A+  G E    +
Sbjct: 94  SDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFV 153

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV----------- 369
            +++I+ Y+  G L  A+ +F  M++RD+V+WN LI  Y Q  +   V+           
Sbjct: 154 SNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANI 213

Query: 370 ---ASSIVDMYAKCERIDN-------AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
              A ++V +   C  + +        K +  + +  DV L NTL+  Y     +  A  
Sbjct: 214 KADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQG 273

Query: 420 LFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           +F +M+      NI+SWN++++G  + G +  A+ +F  M     + ++I+WT++I+G +
Sbjct: 274 VFDRMR----ERNIVSWNALVMGHAKVGNLTAARKLFDNMP----KRDVISWTSMITGYS 325

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
           Q S  ++A+  FQEM+   +KP   T+   LSAC  +  L  G A+H Y+ RH +     
Sbjct: 326 QASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIY 385

Query: 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599
           +  SL+DMY KCG + +A  VF     K+   + ++ISG A++G A  AL LF  + ++G
Sbjct: 386 VGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREG 445

Query: 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
           + P   TF  IL AC+HAGLVN+GLE F  M S H + P+M+H+GCVV+LLSR GN+D+A
Sbjct: 446 VQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKA 505

Query: 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719
              I  MP  PD  +   LLS C       LAE  ++ LL+L+P + GNYV LSN YA  
Sbjct: 506 YEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGV 565

Query: 720 GRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
            RW++  ++R++M++  ++K  G S I++
Sbjct: 566 DRWDDAMKMRELMEDSDVQKPSGSSSIEV 594



 Score =  205 bits (522), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 151/579 (26%), Positives = 287/579 (49%), Gaps = 59/579 (10%)

Query: 97  TGQQIHARILK---NGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           T +++HA +++   + D F  ++ + +    +      L  A  +F ++    +  W  +
Sbjct: 32  TSKELHAHLIRTQLHTDPFLMSDVIRS----YSLSSTNLHKAHLVFNQIECPTLVVWNHM 87

Query: 154 IGLNCRVGLSE-----KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208
           I      GLS+     +A+  +  M   G++ +N  L  + KAC  +  +  GR +H + 
Sbjct: 88  IR-----GLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHA 142

Query: 209 LKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAI 268
           LK+GF+  +FV+++LI MY  CG L  A+K+FDGM+ R++V+WN++I GY Q    +E +
Sbjct: 143 LKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVL 202

Query: 269 RVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328
           R+F  MT   ++   V++  I+ A ++L   +           N +E+D  LG+++I+ Y
Sbjct: 203 RLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMY 262

Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVD 375
            +  L E A+ VF RM ER+IV+WN L+  + + G             + DV+  +S++ 
Sbjct: 263 GRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMIT 322

Query: 376 MYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP 431
            Y++  +  +A ++F  ++      D V   ++L+A A LG+      + + ++  G+  
Sbjct: 323 GYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQA 382

Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
           +I   NS+I  + + G + +A ++F +M+      + ++WT++ISGL  N   N A+  F
Sbjct: 383 DIYVGNSLIDMYCKCGMVEKALEVFHRMK----DKDSVSWTSVISGLAVNGFANSALDLF 438

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNG-------RAIHGYL--IRHDLCLPTPIVT 542
            +ML  G++P+  T    L AC     +  G        ++HG +  ++H  C       
Sbjct: 439 SQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGC------- 491

Query: 543 SLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
            +VD+ ++ GNI +A       P   ++ V+  ++S   +HG  V A    K L +  +D
Sbjct: 492 -VVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLE--LD 548

Query: 602 P-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639
           P DS  +  + N  +     ++ +++   M      KPS
Sbjct: 549 PCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPS 587


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  318 bits (814), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 186/584 (31%), Positives = 286/584 (48%), Gaps = 92/584 (15%)

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A KVFD M  RN+V W  MI  + Q G   +AI +F +M L G  P R + +S+LSA   
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355
           L  L  GKQ H+  +  G+ L                                       
Sbjct: 69  LGLLALGKQLHSRVIRLGLAL--------------------------------------- 89

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCE---RIDNAKQVFNSIILRDVVLWNTLLAAYADLG 412
                     DV V  S+VDMYAKC     +D++++VF  +   +V+ W  ++ AYA  G
Sbjct: 90  ----------DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSG 139

Query: 413 R-SGEASRLFYQMQLEGISPNIISW----------------------------------- 436
               EA  LF +M    I PN  S+                                   
Sbjct: 140 ECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVG 199

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           NS+I  + R+G+M +A+  F     +  + NL+++  ++ G  +N    EA L F E+ +
Sbjct: 200 NSLISMYARSGRMEDARKAF----DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIAD 255

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
           TGI  S  T    LS    + ++  G  IHG L++        I  +L+ MY++CGNI  
Sbjct: 256 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 315

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A +VF+    + +  + +MI+G+A HG A  AL +F  + + G  P+ IT+  +L+ACSH
Sbjct: 316 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 375

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            G+++EG + F  M+ +H + P MEH+ C+V+LL R G L EA+  I +MP   DA +  
Sbjct: 376 VGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWR 435

Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
           +LL  C     TEL  + +E +L+ EPD+P  Y+ LSN +A++G+W +V ++R  MKE+ 
Sbjct: 436 TLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERN 495

Query: 737 LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           L K  GCSWI++   +H F   + SHP+  +IY  L  L   ++
Sbjct: 496 LIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIK 539



 Score =  206 bits (523), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 139/492 (28%), Positives = 249/492 (50%), Gaps = 37/492 (7%)

Query: 135 ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194
           A ++F ++  +N+ +W  +I    ++G +  A+  F++M+  G  PD F   +VL AC  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC---GDLEEARKVFDGMIARNVVAW 251
           LG +  G+ +H  V+++G    V V  SL+DMY KC   G ++++RKVF+ M   NV++W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 252 NSMIVGYVQNG-LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
            ++I  Y Q+G  ++EAI +F +M    + P   S +S+L A  NL     G+Q ++ AV
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVA 370
             G+   N +G+S+I+ Y++ G +EDA   F  + E+++V++N                 
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYN----------------- 231

Query: 371 SSIVDMYAKCERIDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
            +IVD YAK  + + A  +FN I    I      + +LL+  A +G  G+  ++  ++  
Sbjct: 232 -AIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK 290

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
            G   N    N++I  + R G +  A  +F +M+      N+I+WT++I+G  ++     
Sbjct: 291 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEME----DRNVISWTSMITGFAKHGFATR 346

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-HDLCLPTPIVTSLV 545
           A+  F +MLETG KP+  T    LSAC+ V  +  G+     + + H +         +V
Sbjct: 347 ALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMV 406

Query: 546 DMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHG---LAVEALALFKNLQQKGID 601
           D+  + G + +A    +  P   +  V+  ++    +HG   L   A  +   L+Q+  D
Sbjct: 407 DLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI--LEQEPDD 464

Query: 602 PDSITFTNILNA 613
           P +    + L+A
Sbjct: 465 PAAYILLSNLHA 476



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 220/420 (52%), Gaps = 24/420 (5%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           R+A+DL  +M+   +      Y  +L  C     +  G+Q+H+R+++ G   A +  V  
Sbjct: 38  RDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG--LALDVCVGC 95

Query: 121 KLVVFYAKCDA---LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG-FVEMQED 176
            LV  YAKC A   +D + ++F ++   NV SW AII    + G  +K  I  F +M   
Sbjct: 96  SLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISG 155

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
            + P++F   +VLKACG L     G  V+ Y +K+G      V +SLI MY + G +E+A
Sbjct: 156 HIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA 215

Query: 237 RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296
           RK FD +  +N+V++N+++ GY +N  +EEA  +F E+   G+  +  +  S+LS +A++
Sbjct: 216 RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASI 275

Query: 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356
            A+ +G+Q H   +  G + +  + +++I+ YS+ G +E A  VF+ M +R++++W  +I
Sbjct: 276 GAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMI 335

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
             + + G      A+  ++M+ K         +  +    + + +  +L+A + +G   E
Sbjct: 336 TGFAKHG-----FATRALEMFHK---------MLETGTKPNEITYVAVLSACSHVGMISE 381

Query: 417 ASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475
             + F  M  E GI P +  +  ++    R+G + EA +    + S+ +  + + W TL+
Sbjct: 382 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEF---INSMPLMADALVWRTLL 438



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 143/315 (45%), Gaps = 29/315 (9%)

Query: 32  KLRESDNSYESLYK----SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQ 87
           ++ ++  +++ L++    SY   +   +K  +  EA  L  E+      I    +  LL 
Sbjct: 211 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 270

Query: 88  GCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNV 147
           G      M  G+QIH R+LK G  +  N+ +   L+  Y++C  ++ A ++F  +  +NV
Sbjct: 271 GAASIGAMGKGEQIHGRLLKGG--YKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV 328

Query: 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR----- 202
            SW ++I    + G + +AL  F +M E G  P+      VL AC  +G +  G+     
Sbjct: 329 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNS 388

Query: 203 --AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYV 259
               HG V ++    C      ++D+ G+ G L EA +  + M +  + + W +++    
Sbjct: 389 MYKEHGIVPRMEHYAC------MVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 442

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
            +G N E  R   EM LE  EP   +   +LS   NL A   G+    V +   M+  N+
Sbjct: 443 VHG-NTELGRHAAEMILEQ-EPDDPAAYILLS---NLHA-SAGQWKDVVKIRKSMKERNL 496

Query: 320 L---GSSIINFYSKV 331
           +   G S I   ++V
Sbjct: 497 IKEAGCSWIEVENRV 511


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  318 bits (814), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 189/578 (32%), Positives = 312/578 (53%), Gaps = 81/578 (14%)

Query: 272 YEMTLEGVEPTRVSVTSILSASANLDALDEGK----------QAHAVAVINGMELDNV-L 320
           + +T + ++ TR S + ILS   + ++L   K            H+  V + ++  NV L
Sbjct: 32  FSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFL 91

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ---------SGQS------ 365
            +S+IN Y+K  L  +A  +F++M   D++  +  +++  +         SG+S      
Sbjct: 92  WNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSI 151

Query: 366 ------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG---E 416
                 D VVA+SI+ MY KC   + +++VF+ + +R+   WN L+A YA  G      E
Sbjct: 152 RIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREE 211

Query: 417 ASRLFYQMQLEGISPNIIS--------------W------------NSVILG-------- 442
                 QMQ++ + P+  +              W            N ++LG        
Sbjct: 212 TWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLG 271

Query: 443 ------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-L 495
                 + R+ ++   + +F +M+      N+ +WT +I+G  +N   +EA+  F++M +
Sbjct: 272 CCLIDMYSRSNKVVVGRRVFDRMKC----RNVFSWTAMINGYVENGDSDEALSLFRDMQV 327

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
             GI+P+  ++   L AC+  + L +GR IHG+ +R +L     +  +L+DMY+KCG++ 
Sbjct: 328 IDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLD 387

Query: 556 QAKRVF-DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
            A+RVF D S  K+   +++MISGY +HG   EA+ L+  + Q GI PD IT   IL+AC
Sbjct: 388 SARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSAC 447

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
           S +GLVNEGL ++  + +D+ ++P++E F C+V++L R G LD AL  I  MP +P   +
Sbjct: 448 SRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSV 507

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
            G+L+S  +   + E+ E     L+QLEP+NP NYV++SN YA+S RW+ V++VR +MK+
Sbjct: 508 WGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKD 567

Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           K LRK PGCSWI I  + H F   D++HP    IY  L
Sbjct: 568 KRLRKVPGCSWISINNKTHCFYVADKAHPSATSIYNML 605



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 239/503 (47%), Gaps = 71/503 (14%)

Query: 75  FQIGPEIYGELLQG---CVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131
           F+  P +   LLQ     V  + +   +Q H+RIL  G   ++N  + TKL+  YA C  
Sbjct: 18  FEFDPSL--ALLQSLHFSVTHKSLKLTRQSHSRILSLG--LSQNSLLATKLIFAYAICQH 73

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
              +  +F  L+ KNVF W ++I    +  L  +A   F +M    V PD+F L  + K 
Sbjct: 74  PYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKV 133

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
              LG +  G+++HG  +++GF     VA+S++ MY KCG+ EE+RKVFD M  RN  +W
Sbjct: 134 SSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSW 193

Query: 252 NSMIVGYVQNG---LNEEAIRVFYEMTLEGVEPTRVSVTSILS-ASANLDALDEGKQAHA 307
           N +I GY  +G     EE      +M ++ V P   +++S+L     +    D G++ H 
Sbjct: 194 NVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHC 253

Query: 308 VAVIN----GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
             V N    G++ D  LG  +I+ YS+   +     VF RM  R++ +W  +I  YV++G
Sbjct: 254 YIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENG 313

Query: 364 QSD-----------------------------------------------------VVVA 370
            SD                                                     V + 
Sbjct: 314 DSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLC 373

Query: 371 SSIVDMYAKCERIDNAKQVF-NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
           ++++DMY+KC  +D+A++VF +  + +D + W+++++ Y   G+  EA  L+ +M   GI
Sbjct: 374 NALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGI 433

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQ-MQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
            P++I+   ++    R+G +NE  +++   +   G++P L  +  ++  L +    + A+
Sbjct: 434 RPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPAL 493

Query: 489 LFFQEM-LETGIKPSTTTITCAL 510
            F + M +E G       ++C++
Sbjct: 494 DFIKAMPVEPGPSVWGALVSCSI 516



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 137/506 (27%), Positives = 219/506 (43%), Gaps = 97/506 (19%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           R  H  +L +G      +A+ LI  Y  C     +R VFD +  +NV  WNS+I GY +N
Sbjct: 43  RQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKN 102

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
            L  EA ++F +M    V P   +++++   S+ L AL  GK  H  ++  G   D V+ 
Sbjct: 103 RLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVA 162

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------------ 363
           +SI++ Y K G  E++  VF  M  R+  +WN+LIA Y  SG                  
Sbjct: 163 NSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMD 222

Query: 364 --QSDVVVASSIV-------------------------------DMYAKCERIDN----- 385
             + D    SS++                               D++  C  ID      
Sbjct: 223 EVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSN 282

Query: 386 ----AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWNSV- 439
                ++VF+ +  R+V  W  ++  Y + G S EA  LF  MQ ++GI PN +S  SV 
Sbjct: 283 KVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVL 342

Query: 440 --------------ILGFLRNGQMNEAK-------DMFLQMQSL----------GVQPNL 468
                         I GF    ++N          DM+ +  SL           +  + 
Sbjct: 343 PACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDA 402

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
           I+W+++ISG   +  G EAIL + +ML+ GI+P   T    LSAC+    +  G  I+  
Sbjct: 403 ISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSS 462

Query: 529 LIRHDLCLPT-PIVTSLVDMYAKCGNIHQAKRVFDISPSKELP-VYNAMISGYAMHG-LA 585
           +I      PT  I   +VDM  + G +  A       P +  P V+ A++S   +HG L 
Sbjct: 463 VINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLE 522

Query: 586 VEALALFKNLQQKGIDPDS-ITFTNI 610
           ++ LA    +Q +  +P + ++ +N+
Sbjct: 523 MQELAYRFLIQLEPENPSNYVSISNL 548


>gi|224057531|ref|XP_002299253.1| predicted protein [Populus trichocarpa]
 gi|222846511|gb|EEE84058.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  318 bits (814), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 189/600 (31%), Positives = 307/600 (51%), Gaps = 56/600 (9%)

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF-VASSLIDMYGKCGDLEEARKVFDGM 243
           +  +LK C     +  G+ VH +++  G D  +  + S L+ MY  CGD++ A  VF  +
Sbjct: 27  IAGLLKQCLKFKTLRGGKQVHAWLVTRGTDLRILSLNSKLVGMYASCGDVKSATLVFKRI 86

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGK 303
              NV A N M++     G  +EAI  F  M        + + + +L A   L  L++GK
Sbjct: 87  RNPNVFALNWMVLASAFEGYYKEAIGYFCSMKDSVFIYNKYTFSIVLKAFVGLLDLNKGK 146

Query: 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363
           + H++    G E                                                
Sbjct: 147 EVHSMVKQLGFE------------------------------------------------ 158

Query: 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423
            SDV VA+++VDMY+KC  I  A+ VF+ +  RD+V W ++++ Y ++G+  EA  LF +
Sbjct: 159 -SDVCVANALVDMYSKCGCIGYARTVFDRMAKRDIVSWTSMISGYCNVGKIEEALVLFER 217

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           M+LEG+ PN  +WN++I G+ R G  + A  +  +M   G+ P+L+TW  +I+G  Q   
Sbjct: 218 MKLEGLEPNDFTWNALISGYARRGDSDGAFSLLSKMTREGLVPDLVTWNAMIAGFVQGER 277

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
             +A   FQ+ML  G+KP+  T+   L AC  V+S++ GRAIHG + R +  +    + S
Sbjct: 278 AGDAFKLFQDMLVLGVKPNLVTVAGLLPACGMVSSIQRGRAIHGLVYRLEFDISNAFIAS 337

Query: 544 -LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP 602
            L+DMY++CG+  +A+ VF+   +K +  +NAMI  Y  HG+   ++ LF+ +  +GI  
Sbjct: 338 ALIDMYSECGSFKEARTVFEKIHNKNVASWNAMIGCYGKHGMVNTSIQLFERMHGEGIQA 397

Query: 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662
           + +T   +L+ACSH+G V +GLE+F  M   + V    EH+ CVV++LSR G L +A  +
Sbjct: 398 NDVTLLCVLSACSHSGYVEKGLEIFWSMKERYMVDRKKEHYACVVDMLSRSGRLVDAYEL 457

Query: 663 ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722
           +  MP +    I G+  + C+     +LAE + + + + +   PG++  LS  YA SG  
Sbjct: 458 VKEMPIEVTKSIAGAFFNGCMIHGRRDLAEKMIDDVTRGDLKKPGSFAMLSAIYATSGER 517

Query: 723 NEV-SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTE-EIYATLALLGMHVR 780
            EV + ++ I+KE+  +K P CS +   EE   FV  +      E  I A   L+ M VR
Sbjct: 518 KEVRNTMKKIVKERKAQKEPACSQV---EEKDEFVGVEIEKENNEVSIKAAFQLIQMVVR 574



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 199/398 (50%), Gaps = 23/398 (5%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+ C+  + +  G+Q+HA ++  G    R   + +KLV  YA C  +  A+ +F R+R 
Sbjct: 30  LLKQCLKFKTLRGGKQVHAWLVTRGTDL-RILSLNSKLVGMYASCGDVKSATLVFKRIRN 88

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
            NVF+   ++  +   G  ++A+  F  M++     + +    VLKA   L  +  G+ V
Sbjct: 89  PNVFALNWMVLASAFEGYYKEAIGYFCSMKDSVFIYNKYTFSIVLKAFVGLLDLNKGKEV 148

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H  V ++GF+  V VA++L+DMY KCG +  AR VFD M  R++V+W SMI GY   G  
Sbjct: 149 HSMVKQLGFESDVCVANALVDMYSKCGCIGYARTVFDRMAKRDIVSWTSMISGYCNVGKI 208

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
           EEA+ +F  M LEG+EP   +  +++S  A     D      +     G+  D V  +++
Sbjct: 209 EEALVLFERMKLEGLEPNDFTWNALISGYARRGDSDGAFSLLSKMTREGLVPDLVTWNAM 268

Query: 325 INFYSKVGLLEDAEVVFSRM----VERDIVTWNLLI-----ASYVQSGQ----------- 364
           I  + +     DA  +F  M    V+ ++VT   L+      S +Q G+           
Sbjct: 269 IAGFVQGERAGDAFKLFQDMLVLGVKPNLVTVAGLLPACGMVSSIQRGRAIHGLVYRLEF 328

Query: 365 --SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
             S+  +AS+++DMY++C     A+ VF  I  ++V  WN ++  Y   G    + +LF 
Sbjct: 329 DISNAFIASALIDMYSECGSFKEARTVFEKIHNKNVASWNAMIGCYGKHGMVNTSIQLFE 388

Query: 423 QMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
           +M  EGI  N ++   V+     +G + +  ++F  M+
Sbjct: 389 RMHGEGIQANDVTLLCVLSACSHSGYVEKGLEIFWSMK 426



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 147/312 (47%), Gaps = 42/312 (13%)

Query: 57  EKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNE 116
           E   +EA+     MK   F      +  +L+  V   D+  G+++H+ + + G  F  + 
Sbjct: 104 EGYYKEAIGYFCSMKDSVFIYNKYTFSIVLKAFVGLLDLNKGKEVHSMVKQLG--FESDV 161

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQED 176
            V   LV  Y+KC  +  A  +F R+  +++ SW ++I   C VG  E+AL+ F  M+ +
Sbjct: 162 CVANALVDMYSKCGCIGYARTVFDRMAKRDIVSWTSMISGYCNVGKIEEALVLFERMKLE 221

Query: 177 GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA 236
           G+ P++F             W                       ++LI  Y + GD + A
Sbjct: 222 GLEPNDFT------------W-----------------------NALISGYARRGDSDGA 246

Query: 237 RKVFDGM----IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
             +   M    +  ++V WN+MI G+VQ     +A ++F +M + GV+P  V+V  +L A
Sbjct: 247 FSLLSKMTREGLVPDLVTWNAMIAGFVQGERAGDAFKLFQDMLVLGVKPNLVTVAGLLPA 306

Query: 293 SANLDALDEGKQAHAVAVINGMELDNV-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVT 351
              + ++  G+  H +      ++ N  + S++I+ YS+ G  ++A  VF ++  +++ +
Sbjct: 307 CGMVSSIQRGRAIHGLVYRLEFDISNAFIASALIDMYSECGSFKEARTVFEKIHNKNVAS 366

Query: 352 WNLLIASYVQSG 363
           WN +I  Y + G
Sbjct: 367 WNAMIGCYGKHG 378



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 16/244 (6%)

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS-LVDMYAKCGNIHQAKRV 560
           S   I   L  C    +LR G+ +H +L+     L    + S LV MYA CG++  A  V
Sbjct: 23  SLDPIAGLLKQCLKFKTLRGGKQVHAWLVTRGTDLRILSLNSKLVGMYASCGDVKSATLV 82

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           F    +  +   N M+   A  G   EA+  F +++      +  TF+ +L A      +
Sbjct: 83  FKRIRNPNVFALNWMVLASAFEGYYKEAIGYFCSMKDSVFIYNKYTFSIVLKAFVGLLDL 142

Query: 621 NEGLELF-----VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           N+G E+      +G  SD  V  ++      V++ S+CG +  A R +       D    
Sbjct: 143 NKGKEVHSMVKQLGFESDVCVANAL------VDMYSKCGCIGYA-RTVFDRMAKRDIVSW 195

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV--ALSNAYAASGRWNEVSQVRDIMK 733
            S++S      + E A  + E  ++LE   P ++   AL + YA  G  +    +   M 
Sbjct: 196 TSMISGYCNVGKIEEALVLFER-MKLEGLEPNDFTWNALISGYARRGDSDGAFSLLSKMT 254

Query: 734 EKGL 737
            +GL
Sbjct: 255 REGL 258


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  318 bits (814), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 204/688 (29%), Positives = 328/688 (47%), Gaps = 113/688 (16%)

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD-----GMIAR-------- 246
             R VHG+V+  GF     + + LID+Y K  D   ARK+FD      +IAR        
Sbjct: 31  LARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYS 90

Query: 247 --------------------NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
                               + V +N+MI GY        AI +F  M     +P   + 
Sbjct: 91  ALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTF 150

Query: 287 TSILSASANLDALDEGK--QAHAVAVINGMEL---------------------------- 316
            S+LSAS  L   DE +  Q H   V  G+E+                            
Sbjct: 151 ASVLSAST-LIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMA 209

Query: 317 ------------DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG- 363
                       +  + +++I  Y + G L  A  +   M E+  + WN +I+ Y+  G 
Sbjct: 210 SARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGL 269

Query: 364 ----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIIL------RDVVL- 400
                           Q D    +S++   A        KQV   I+       RD +L 
Sbjct: 270 FEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLS 329

Query: 401 -WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
             NTL+  Y   G+   A ++FY+M ++    +II+WN+++ G++  G+M EAK  F QM
Sbjct: 330 VGNTLITLYWKYGKVDGARKIFYEMPVK----DIITWNTLLSGYVNAGRMEEAKSFFAQM 385

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
                + NL+TWT +ISGL QN  G +A+  F +M   G +P+      A++AC+ + +L
Sbjct: 386 P----EKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGAL 441

Query: 520 RNGRAIHGYLIR--HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
            NGR +H  ++   HD  L   +  +++ MYA+CG +  A+ +F   P  +   +N+MI+
Sbjct: 442 ENGRQLHAQIVHLGHDSTLS--VGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIA 499

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
               HG  V+A+ L++ + ++GI PD  TF  +L+ACSHAGLV EG   F  M  ++ + 
Sbjct: 500 ALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIA 559

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
           P  +H+  +++L  R G   +A  VI +MP +  A I  +LL+ C      +L    +E 
Sbjct: 560 PGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEK 619

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVA 757
           L +L P + G YV LSN YA+ GRWN+V++ R +M+++G++K P CSW ++  ++HVF+ 
Sbjct: 620 LFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLV 679

Query: 758 CDRSHPKTEEIYATLALLGMHVRLVSKV 785
            D  HP+   IY  L  L + ++ +  +
Sbjct: 680 DDTVHPEVLSIYNYLEKLNLEMKKIGYI 707



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 189/400 (47%), Gaps = 53/400 (13%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RNE++ T L+  Y +   L  A  +   +  +   +W A+I      GL E AL  F +M
Sbjct: 221 RNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKM 280

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF----DGCVFVASSLIDMYGK 229
           +  GV  D     +V+ AC   G+   G+ VH Y+LK       D  + V ++LI +Y K
Sbjct: 281 RLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWK 340

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYV------------------------------ 259
            G ++ ARK+F  M  ++++ WN+++ GYV                              
Sbjct: 341 YGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGL 400

Query: 260 -QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
            QNG  E+A+++F +M L+G EP   +    ++A + L AL+ G+Q HA  V  G +   
Sbjct: 401 AQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTL 460

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
            +G+++I  Y++ G++E A  +F  M   D V+WN +IA+  Q G               
Sbjct: 461 SVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHG------------- 507

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWN 437
             + I+  +Q+    IL D   + T+L+A +  G   E +R F  M +  GI+P    + 
Sbjct: 508 -VKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYA 566

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
            +I  F R G+ ++AK++   + S+  +     W  L++G
Sbjct: 567 RMIDLFCRAGKFSDAKNV---IDSMPFEARAPIWEALLAG 603



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 184/428 (42%), Gaps = 57/428 (13%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKN-- 108
           IS         +A+ L  +M+    Q+    Y  ++  C        G+Q+HA ILKN  
Sbjct: 261 ISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNEL 320

Query: 109 ---GDFF-------------------ARNEYVE---------TKLVVFYAKCDALDVASR 137
               DF                    AR  + E           L+  Y     ++ A  
Sbjct: 321 NPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKS 380

Query: 138 LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW 197
            F ++  KN+ +W  +I    + G  E+AL  F +M+ DG  P+++     + AC  LG 
Sbjct: 381 FFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGA 440

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           +  GR +H  ++ +G D  + V +++I MY +CG +E AR +F  M   + V+WNSMI  
Sbjct: 441 LENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAA 500

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-GMEL 316
             Q+G   +AI ++ +M  EG+ P R +  ++LSA ++   ++EG +     + N G+  
Sbjct: 501 LGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAP 560

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVD 375
                + +I+ + + G   DA+ V   M  E     W  L+A     G  D+        
Sbjct: 561 GEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDL-------- 612

Query: 376 MYAKCERIDNAKQVFNSIILRD---VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
                  I+ A+++F  I   D   V+L N     YA LGR  + +R    M+  G+   
Sbjct: 613 ------GIEAAEKLFKLIPQHDGTYVLLSNM----YASLGRWNDVARTRKLMRDRGVKKE 662

Query: 433 -IISWNSV 439
              SW  V
Sbjct: 663 PACSWTEV 670



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 45/158 (28%)

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-------- 566
           +++S    R +HG++I     L   IV  L+D+Y K  +   A+++FD  P         
Sbjct: 25  NLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTT 84

Query: 567 ------------------KELPV-------YNAMISGYAMHGLAVEALALFKNLQQKGID 601
                              E P+       YNAMI+GY+       A+ LF+ ++     
Sbjct: 85  LITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQ 144

Query: 602 PDSITFTNILNACS------------HAGLVNEGLELF 627
           PD  TF ++L+A +            H  +V  G+E+F
Sbjct: 145 PDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIF 182


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  318 bits (814), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 185/605 (30%), Positives = 310/605 (51%), Gaps = 49/605 (8%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYV 259
            + +H  +L+        + S+++ +Y     L ++  +F+ + +    +AW S+I  Y 
Sbjct: 24  AKQLHAQILRTSLPSPSLL-STILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYT 82

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
            +GL   ++  F +M   G  P      S+L +   +  L  G+  H   +  GM  D  
Sbjct: 83  SHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLY 142

Query: 320 LGSSIINFYSKVGLLEDAEV-----------------------------VFSRMVERDIV 350
             ++++N YSK   LE+                                VF  M +RDIV
Sbjct: 143 TCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIV 202

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
           +WN +I+   Q+G  +        D       + NA    +S  L  V+    + A Y +
Sbjct: 203 SWNTVISGNAQNGMHE--------DALMMVREMGNADLRPDSFTLSSVL---PIFAEYVN 251

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLIT 470
           L +  E     Y ++  G   ++   +S+I  + +  +++++  +F  +     Q + I+
Sbjct: 252 LLKGKEIHG--YAIR-NGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLP----QHDGIS 304

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W ++I+G  QN   +E + FFQ+ML   IKP+  + +  + AC  + +L  G+ +HGY+I
Sbjct: 305 WNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYII 364

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           R        I ++LVDMYAKCGNI  A+ +FD     ++  + AMI GYA+HG A +A++
Sbjct: 365 RSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAIS 424

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LFK ++ +G+ P+ + F  +L ACSHAGLV+E  + F  M  D+++ P +EH+  V +LL
Sbjct: 425 LFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLL 484

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
            R G L+EA   I  M  +P   +  +LL+ C      ELAE +S+ L  ++P N G YV
Sbjct: 485 GRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYV 544

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            LSN Y+A+GRW +  ++R  M++KG++K P CSWI+I  ++H FVA D+SHP  + I  
Sbjct: 545 LLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINE 604

Query: 771 TLALL 775
            L +L
Sbjct: 605 ALKVL 609



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 137/512 (26%), Positives = 238/512 (46%), Gaps = 89/512 (17%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL-R 143
           LLQ     +     +Q+HA+IL+       +  + + ++  Y+  + L  +  +F  L  
Sbjct: 11  LLQNPSSVKSKSQAKQLHAQILRTS---LPSPSLLSTILSIYSNLNLLHDSLLIFNSLPS 67

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
                +W +II      GL   +L  F++M   G  PD+ V P+VLK+C  +  + FG +
Sbjct: 68  PPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGES 127

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEA--------------------------- 236
           VHG ++++G    ++  ++L++MY K   LEE                            
Sbjct: 128 VHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLG 187

Query: 237 --RKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
             RKVF+ M  R++V+WN++I G  QNG++E+A+ +  EM    + P   +++S+L   A
Sbjct: 188 SLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA 247

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
               L +GK+ H  A+ NG + D  +GSS+I+ Y+K   ++D+  VF  + + D ++WN 
Sbjct: 248 EYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNS 307

Query: 355 LIASYVQSGQSD------------------------------------------------ 366
           +IA  VQ+G  D                                                
Sbjct: 308 IIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSR 367

Query: 367 ----VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
               V +AS++VDMYAKC  I  A+ +F+ + L D+V W  ++  YA  G + +A  LF 
Sbjct: 368 FDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFK 427

Query: 423 QMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQN 481
           +M++EG+ PN +++ +V+      G ++EA   F  M Q   + P L  +  +   L + 
Sbjct: 428 RMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRV 487

Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
               EA  F  +M    I+P+ +  +  L+AC
Sbjct: 488 GRLEEAYEFISDM---HIEPTGSVWSTLLAAC 516


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 195/607 (32%), Positives = 319/607 (52%), Gaps = 35/607 (5%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLI--DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           + VH  +L+ G     F AS L           L+ AR +FD +   N+  WN++I  Y 
Sbjct: 42  KEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYA 101

Query: 260 QNGLNEEAIRVFYEMTLEGVE--PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD 317
            +    ++  +F ++ L+  E  P + +   ++ A++ L A   G   H +A+     +D
Sbjct: 102 SSSDPFQSFVIFLDL-LDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMD 160

Query: 318 NVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG------------QS 365
             + +S++ FY   G L  AE +F  +  +D+V+WN +I+++ Q              + 
Sbjct: 161 LYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMER 220

Query: 366 DVVVASSI--VDMYAKCER---IDNAKQVFNSI----ILRDVVLWNTLLAAYADLGRSGE 416
           + V+ +S+  V + + C +   ++  + V + I    I  D+ L N +L  Y   G   +
Sbjct: 221 ENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDD 280

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           A +LF +M       ++ SW  ++ G+ + G  + A+ +F  M        +  W  LIS
Sbjct: 281 AQKLFDEMP----ERDVFSWTIMLDGYAKMGDYDAARLVFNAMPV----KEIAAWNVLIS 332

Query: 477 GLTQNSCGNEAILFFQEMLETGI-KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
              QN    EA+  F E+  + I KP   T+   LSAC  + ++  G  IH Y+ R  + 
Sbjct: 333 AYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIV 392

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
           L   +++SLVDMYAKCG++ +A  VF     +++ V++AMI+G  MHG    A+ LF  +
Sbjct: 393 LNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEM 452

Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
           Q+  + P+S+TFTN+L ACSHAGLV+EG   F  M   + V P M+H+ C+V++L R G 
Sbjct: 453 QEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGF 512

Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
           L+EA+ +I  M   P A + G+LL  C      EL E  S+ LL+LEP N G  V LSN 
Sbjct: 513 LEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNI 572

Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           YA +GRW +VS++R +M++  L+K PGCS I+    +H F+  D +HP +  IY+ L  +
Sbjct: 573 YAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEI 632

Query: 776 GMHVRLV 782
              ++ V
Sbjct: 633 ATKLKSV 639



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 139/533 (26%), Positives = 259/533 (48%), Gaps = 81/533 (15%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYA--KCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           +++HAR+L+ G FF  + +  +KL    A      LD A  LF ++   N+++W  +I  
Sbjct: 42  KEVHARMLRTGLFF--DPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRA 99

Query: 157 NCRVGLSEKALIGFVEMQEDGVS-PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
                   ++ + F+++ +     P+ F  P V+KA   L     G AVHG  +K+ F  
Sbjct: 100 YASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGM 159

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            +++ +SL+  YG CGDL  A ++F G+  ++VV+WNSMI  + Q    E+A+ +F +M 
Sbjct: 160 DLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKME 219

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            E V P  V++  +LSA A    L+ G+   +     G+++D  L +++++ Y+K G ++
Sbjct: 220 RENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVD 279

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
           DA+ +F  M ERD+ +W +++                  D YAK    D A+ VFN++ +
Sbjct: 280 DAQKLFDEMPERDVFSWTIML------------------DGYAKMGDYDAARLVFNAMPV 321

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQL----------------------------- 426
           +++  WN L++AY   G+  EA  +F ++QL                             
Sbjct: 322 KEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGW 381

Query: 427 -------EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
                  EGI  N    +S++  + + G + +A ++F  ++    + ++  W+ +I+GL 
Sbjct: 382 IHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE----ERDVYVWSAMIAGLG 437

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA-------IHGYL--I 530
            +  G  AI  F EM E  +KP++ T T  L AC+    +  GR        ++G +  +
Sbjct: 438 MHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEM 497

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMH 582
           +H  C        +VD+  + G + +A  +  ++S +    V+ A++   ++H
Sbjct: 498 KHYAC--------MVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLH 542


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/470 (34%), Positives = 272/470 (57%), Gaps = 26/470 (5%)

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVA 370
           +I+ Y +    + A  +F +M ERD+ +WN+++  YV++              + D+V  
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 371 SSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430
           ++++  YA+   +D A+++F  + L++ + WN LLAAY   GR  +A RLF       + 
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESK----MD 116

Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490
             ++SWN ++ GF+R     + +++F  M     Q + I+W+ +I+G +QN C  EA+ F
Sbjct: 117 WTLVSWNCLMGGFVR-----KRRNLFDNMP----QRDSISWSAMIAGYSQNGCSEEALHF 167

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           F EM     + + ++ TCALS C+++A+L  GR +H  L++        +  +L+ MY K
Sbjct: 168 FVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCK 227

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
           CG+I +A+  F     K++  +N MI GYA HG   EAL +F+ ++  GI PD  T  ++
Sbjct: 228 CGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSV 287

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           L ACSHAGLV++G E F  M  D+ +   + H+ C+V+LL R G L+EA  ++  MP +P
Sbjct: 288 LAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEP 347

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730
           DA   G+LL        TEL E  ++ + ++EP N G Y+ LS  YAASGRW++  ++R 
Sbjct: 348 DAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRL 407

Query: 731 IMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            M+ KG++K PG SW+++  ++H F   D SHP T++IY  L  + + ++
Sbjct: 408 EMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLK 457



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 149/294 (50%), Gaps = 17/294 (5%)

Query: 138 LFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGW 197
           LF  +  ++  SW+A+I    + G SE+AL  FVEMQ D    +       L  C  +  
Sbjct: 136 LFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAA 195

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           +  GR +H  ++K G+    +V ++L+ MY KCG ++EAR  F  ++ ++VV+WN+MI G
Sbjct: 196 LELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHG 255

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVINGMEL 316
           Y ++G  EEA+ VF  M   G+ P   ++ S+L+A ++   +D+G +  +++    G+  
Sbjct: 256 YARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITA 315

Query: 317 DNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVD 375
             V  + +++   + G LE+A+ +   M  E D  TW  L+             AS I  
Sbjct: 316 KLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLG------------ASRI-- 361

Query: 376 MYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
            +   E  + A Q+   +   +  ++  L   YA  GR  +A ++  +M+ +G+
Sbjct: 362 -HGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGV 414



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 189/407 (46%), Gaps = 40/407 (9%)

Query: 122 LVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ-EDGVSP 180
           ++  Y +   L  A  LF R+  +++ SW A++    + G  ++A   F +M  ++G+S 
Sbjct: 32  MLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISW 91

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVL-KVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           +  +            +V  GR      L +   D  +   + L+      G + + R +
Sbjct: 92  NGLLA----------AYVQNGRIEDAKRLFESKMDWTLVSWNCLMG-----GFVRKRRNL 136

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD M  R+ ++W++MI GY QNG +EEA+  F EM  +     R S T  LS  +N+ AL
Sbjct: 137 FDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAAL 196

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
           + G+Q H   V  G +    +G++++  Y K G +++A   F  ++E+D+V+WN +I  Y
Sbjct: 197 ELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGY 256

Query: 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
            + G  +  +    + M     R D+A  V             ++LAA +  G   + S 
Sbjct: 257 ARHGFGEEALTVFEL-MKTTGIRPDDATMV-------------SVLAACSHAGLVDQGSE 302

Query: 420 LFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL---- 474
            FY M  + GI+  ++ +  ++    R GQ+ EA+++   M+++  +P+  TW  L    
Sbjct: 303 YFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNL---MKNMPFEPDAATWGALLGAS 359

Query: 475 -ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
            I G T+       I+F  E   +G+    + +  A    +D   +R
Sbjct: 360 RIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMR 406



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 71/350 (20%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           +F  + ++  Y +  DL+ AR +F+ M  R++V+WN+M+ GY QNG  +EA  +FY+M L
Sbjct: 26  LFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMPL 85

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKV-GLLE 335
           +      +S   +L+A      +++ K+            ++ +  +++++   + G + 
Sbjct: 86  K----NGISWNGLLAAYVQNGRIEDAKRL----------FESKMDWTLVSWNCLMGGFVR 131

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSG-------------------------------- 363
               +F  M +RD ++W+ +IA Y Q+G                                
Sbjct: 132 KRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCS 191

Query: 364 --------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
                               Q+   V ++++ MY KC  ID A+  F  I+ +DVV WNT
Sbjct: 192 NIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNT 251

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSL 462
           ++  YA  G   EA  +F  M+  GI P+  +  SV+      G +++  + F  M +  
Sbjct: 252 MIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDY 311

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
           G+   L+ +T ++  L +     EA    + M     +P   T    L A
Sbjct: 312 GITAKLVHYTCMVDLLGRAGQLEEAQNLMKNM---PFEPDAATWGALLGA 358



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 112/251 (44%), Gaps = 12/251 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+  S+     EA+    EM+    ++    +   L  C     +  G+Q+H R+
Sbjct: 147 SWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRL 206

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           +K G  +    YV   L+  Y KC ++D A   F  +  K+V SW  +I    R G  E+
Sbjct: 207 VKAG--YQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEE 264

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG-RAVHGYVLKVGFDGCVFVASSLI 224
           AL  F  M+  G+ PD+  + +VL AC   G V  G    +      G    +   + ++
Sbjct: 265 ALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMV 324

Query: 225 DMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG---LNEEAIRVFYEMTLEGVE 280
           D+ G+ G LEEA+ +   M    +   W +++     +G   L E+A ++ +EM     E
Sbjct: 325 DLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEM-----E 379

Query: 281 PTRVSVTSILS 291
           P    +  +LS
Sbjct: 380 PHNSGMYILLS 390


>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
 gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
          Length = 589

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 178/529 (33%), Positives = 283/529 (53%), Gaps = 29/529 (5%)

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
           +R+   WN+++  +        ++  F  M    V P   +  ++L A         G  
Sbjct: 79  SRHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLV 137

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            H  AV  G++ D    +++I+FY ++G       VF   V RD+V+WN ++A YV  G+
Sbjct: 138 VHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGV-RDLVSWNSMVAGYVGCGE 196

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL-GRSGEASRLFYQ 423
                             +D A+ +F+ +  RD   W T++  Y ++ G    A  LF Q
Sbjct: 197 ------------------VDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQ 238

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           M       +++ WNS+I G+ R+G+M+EA+ +F +M     + N+I+W+ +I G  +   
Sbjct: 239 MP----DRDLVCWNSMIDGYARHGRMDEARVLFEEMP----ERNVISWSIVIDGYVRFGE 290

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
            NEA+ FFQ ML  GIKP       A++AC  + +L  GR +H YL +  +     + T+
Sbjct: 291 PNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTA 350

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+DMY KCG +  AK +F+  P K +  +N MI G   HG  ++A+ LF  ++ +    D
Sbjct: 351 LIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMD 410

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            ++   +L +C+HAGLV+EGL +F  M  D  ++P +EH+G +++LL R G +D+A   I
Sbjct: 411 DLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTI 470

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
            TMP +P   + GSLL++C      ELAE   E L  L  D+ G YV LSN YA  G W+
Sbjct: 471 ETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWD 530

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           +V ++R +M  +G++KN G S I++  ++H FV    SHP  EEIY TL
Sbjct: 531 DVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTL 579



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 197/426 (46%), Gaps = 73/426 (17%)

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++ F W  ++ L+       ++L+ F  M+   V+PD +  P VLKACG       G  V
Sbjct: 80  RHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLVV 138

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HG  ++ G D  +F  ++LI  Y + GD    RKVFD  + R++V+WNSM+ GYV  G  
Sbjct: 139 HGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGV-RDLVSWNSMVAGYVGCGEV 197

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE--GKQAHAVAVINGM-ELDNVLG 321
           + A  +F EM                S +  +D   E  G    A  + + M + D V  
Sbjct: 198 DLAQDLFDEMRQR----------DAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCW 247

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------------- 365
           +S+I+ Y++ G +++A V+F  M ER++++W+++I  YV+ G+                 
Sbjct: 248 NSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIK 307

Query: 366 ------------------------------------DVVVASSIVDMYAKCERIDNAKQV 389
                                               DVVV ++++DMY KC R+D AK +
Sbjct: 308 PDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLI 367

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F S+  + VV WN ++      G   +A +LF QM+ E    + +S  +V+      G +
Sbjct: 368 FESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLV 427

Query: 450 NEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTIT 507
           +E   +F +M+  LG++P +  +  LI  L +    ++A    +  +ET  ++P+     
Sbjct: 428 SEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQA----RNTIETMPMEPTPELWG 483

Query: 508 CALSAC 513
             L++C
Sbjct: 484 SLLASC 489



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 184/417 (44%), Gaps = 51/417 (12%)

Query: 63  AVDLLTEMKCRN-FQIGPEI--YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           A DL  EM+ R+ F     I  YGE+  G    R+++         + + D    N  ++
Sbjct: 200 AQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQ-------MPDRDLVCWNSMID 252

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
                 YA+   +D A  LF  +  +NV SW+ +I    R G   +AL  F  M   G+ 
Sbjct: 253 G-----YARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIK 307

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYV--LKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           PD       + AC  LG +  GR +H Y+   KV FD  V V ++LIDMY KCG L+ A+
Sbjct: 308 PDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFD--VVVQTALIDMYVKCGRLDLAK 365

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
            +F+ M  ++VV WN MIVG   +G   +AI++F +M  E      +S+ ++L++  +  
Sbjct: 366 LIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAG 425

Query: 298 ALDEGKQAHAVAVINGMELDNVLG------SSIINFYSKVGLLEDAEVVFSRM-VERDIV 350
            + EG     + +   ME D  L        ++I+   + G ++ A      M +E    
Sbjct: 426 LVSEG-----LGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPE 480

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
            W  L+AS        V +A   V+  A     D+   V  S I  D  +W+ +      
Sbjct: 481 LWGSLLASC--RSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVF----- 533

Query: 411 LGRSGEASRLFYQMQLEGISPNI----ISWNSVILGFLRNGQMNEAK-DMFLQMQSL 462
                   R+   M  EG+  NI    I  +  I  F+  G  +  K +++L + +L
Sbjct: 534 --------RIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTLWNL 582


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  317 bits (812), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/593 (31%), Positives = 316/593 (53%), Gaps = 65/593 (10%)

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           +F+  +  NV  + SM+  Y     + + + ++ +M   GV P    V  IL  SA    
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAF-VYPILIKSAGTGG 114

Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM--VERDIVTWNLLI 356
           +  G  AH + + +G   D  + +++I+ Y+++G +  A  VF  +   ER +  WN ++
Sbjct: 115 I--GFHAHVLKLGHGS--DAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170

Query: 357 ASYVQ---SGQS----------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
           + Y +    GQ+          +V+  +++V  YAK + ++ A++ F+ +  R VV WN 
Sbjct: 171 SGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNA 230

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG--------------------- 442
           +L+ YA  G + EA RLF +M   GI P+  +W +VI                       
Sbjct: 231 MLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKR 290

Query: 443 -----FLRN---------GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
                F+R          G ++ A+ +F  M       N++TW ++I+G  QN     AI
Sbjct: 291 IQLNCFVRTALLDMYAKFGDLDSARKLFNTMPG----RNVVTWNSMIAGYAQNGQSAMAI 346

Query: 489 LFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547
             F+EM+    + P   T+   +SAC  + +L  G  +  +L  + + L      +++ M
Sbjct: 347 ELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFM 406

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           Y++CG++  AKRVF    ++++  YN +ISG+A HG  VEA+ L   +++ GI+PD +TF
Sbjct: 407 YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF 466

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
             +L ACSHAGL+ EG ++F  +       P+++H+ C+V+LL R G L++A R +  MP
Sbjct: 467 IGVLTACSHAGLLEEGRKVFESI-----KDPAIDHYACMVDLLGRVGELEDAKRTMERMP 521

Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
            +P A + GSLL+      + EL E  +  L +LEPDN GN++ LSN YA++GRW +V +
Sbjct: 522 MEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVER 581

Query: 728 VRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           +R+ MK+ G++K  G SW++ G +LH F+  DRSH ++++IY  L  L   +R
Sbjct: 582 IREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMR 634



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 183/369 (49%), Gaps = 30/369 (8%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           RN    T +V  YAK   L+ A R F  +  ++V SW A++    + GL+E+AL  F EM
Sbjct: 192 RNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM 251

Query: 174 QEDGVSPDNFVLPNVLKACGALG----WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
              G+ PD      V+ AC + G         R +H   +++      FV ++L+DMY K
Sbjct: 252 VNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLN----CFVRTALLDMYAK 307

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTS 288
            GDL+ ARK+F+ M  RNVV WNSMI GY QNG +  AI +F EM T + + P  V++ S
Sbjct: 308 FGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVS 367

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
           ++SA  +L AL+ G         N ++L     +++I  YS+ G +EDA+ VF  M  RD
Sbjct: 368 VISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRD 427

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           +V++N LI+ +   G                 E I+    +    I  D V +  +L A 
Sbjct: 428 VVSYNTLISGFAAHGHG--------------VEAINLMSTMKEGGIEPDRVTFIGVLTAC 473

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
           +  G   E  ++F     E I    I   + ++  L  G++ E +D    M+ + ++P+ 
Sbjct: 474 SHAGLLEEGRKVF-----ESIKDPAIDHYACMVDLL--GRVGELEDAKRTMERMPMEPHA 526

Query: 469 ITWTTLISG 477
             + +L++ 
Sbjct: 527 GVYGSLLNA 535



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/484 (25%), Positives = 204/484 (42%), Gaps = 141/484 (29%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASR----LFCRLRVKNVFSWAAII 154
           +Q+HA+I+ N      N +V     +    C  L         LF      NVF + +++
Sbjct: 18  RQLHAQIIHN-SLHHHNYWV----ALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSML 72

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD 214
                +    K ++ + +MQ  GV PD FV P ++K+ G  G +GF    H +VLK+G  
Sbjct: 73  RFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGT-GGIGF----HAHVLKLGHG 127

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDG-------------------------------- 242
              FV +++IDMY + G +  ARKVFD                                 
Sbjct: 128 SDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFD 187

Query: 243 -MIARNVVAW-------------------------------NSMIVGYVQNGLNEEAIRV 270
            M  RNV+ W                               N+M+ GY QNGL EEA+R+
Sbjct: 188 VMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRL 247

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM-----ELDNVLGSSII 325
           F EM   G+EP   +  +++SA ++      G    A +++  +     +L+  + ++++
Sbjct: 248 FDEMVNAGIEPDETTWVTVISACSS-----RGDPCLAASLVRTLHQKRIQLNCFVRTALL 302

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS------------------DV 367
           + Y+K G L+ A  +F+ M  R++VTWN +IA Y Q+GQS                  D 
Sbjct: 303 DMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDE 362

Query: 368 VVASSIVD-----------------------------------MYAKCERIDNAKQVFNS 392
           V   S++                                    MY++C  +++AK+VF  
Sbjct: 363 VTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQE 422

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
           +  RDVV +NTL++ +A  G   EA  L   M+  GI P+ +++  V+      G + E 
Sbjct: 423 MATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEG 482

Query: 453 KDMF 456
           + +F
Sbjct: 483 RKVF 486


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  317 bits (812), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 180/585 (30%), Positives = 309/585 (52%), Gaps = 17/585 (2%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ +H  +++ G     F+++  +++Y KCG+L+   K+FD M  RN+V+W S+I G+  
Sbjct: 94  GKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAH 153

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
           N   +EA+  F +M +EG   T+ +++S+L A  +L A+  G Q H + V  G   +  +
Sbjct: 154 NSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFV 213

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
           GS++ + YSK G L DA   F  M  +D V W  +I  +V++G     + + +       
Sbjct: 214 GSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYM------- 266

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
                 K V + + +   VL +TL A  A L  S     L   +   G        N++ 
Sbjct: 267 ------KMVTDDVFIDQHVLCSTLSACSA-LKASSFGKSLHATILKLGFEYETFIGNALT 319

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
             + ++G M  A ++F Q+ S  +  ++++ T +I G  +     +A+  F ++   GI+
Sbjct: 320 DMYSKSGDMVSASNVF-QIHSDCI--SIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIE 376

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
           P+  T T  + AC + A L +G  +HG +++ +      + ++LVDMY KCG    + ++
Sbjct: 377 PNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQL 436

Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
           FD   + +   +N ++  ++ HGL   A+  F  +  +G+ P+++TF N+L  CSHAG+V
Sbjct: 437 FDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMV 496

Query: 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLS 680
            +GL  F  M   + V P  EH+ CV++LL R G L EA   I  MP +P+     S L 
Sbjct: 497 EDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLG 556

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            C    + E A++ ++ L++LEP+N G +V LSN YA   +W +V  +R ++K+  + K 
Sbjct: 557 ACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKL 616

Query: 741 PGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           PG SW+ I  + HVF   D SHP+ +EIY  L  L   ++ +  V
Sbjct: 617 PGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYV 661



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 225/487 (46%), Gaps = 63/487 (12%)

Query: 83  GELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142
             L+Q     +++  G+Q+HA +++ G     N ++    +  Y+KC  LD   +LF ++
Sbjct: 79  AHLIQTYARTKELNKGKQLHAMLIRGGCL--PNTFLSNHFLNLYSKCGELDYTIKLFDKM 136

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
             +N+ SW +II         ++AL  F +M+ +G     F L +VL+AC +LG + FG 
Sbjct: 137 SQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGT 196

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            VH  V+K GF   +FV S+L DMY KCG+L +A K F+ M  ++ V W SMI G+V+NG
Sbjct: 197 QVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNG 256

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             ++A+  + +M  + V   +  + S LSA + L A   GK  HA  +  G E +  +G+
Sbjct: 257 DFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGN 316

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERD---IVTWNLLIASYVQSGQ--------------- 364
           ++ + YSK G +  A  VF   +  D   IV+   +I  YV+  Q               
Sbjct: 317 ALTDMYSKSGDMVSASNVFQ--IHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRG 374

Query: 365 -------------------------------------SDVVVASSIVDMYAKCERIDNAK 387
                                                 D  V+S++VDMY KC   D++ 
Sbjct: 375 IEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSI 434

Query: 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG 447
           Q+F+ I   D + WNTL+  ++  G    A   F  M   G+ PN +++ +++ G    G
Sbjct: 435 QLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAG 494

Query: 448 QMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
            + +  + F  M+ + GV P    ++ +I  L +     EA  F   M     +P+    
Sbjct: 495 MVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNM---PFEPNVFGW 551

Query: 507 TCALSAC 513
              L AC
Sbjct: 552 CSFLGAC 558



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 146/305 (47%), Gaps = 5/305 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I    K    ++A+    +M   +  I   +    L  C   +    G+ +HA ILK G 
Sbjct: 249 IDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLG- 307

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLF-CRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
            F    ++   L   Y+K   +  AS +F       ++ S  AII     +   EKAL  
Sbjct: 308 -FEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALST 366

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           FV+++  G+ P+ F   +++KAC     +  G  +HG V+K  F    FV+S+L+DMYGK
Sbjct: 367 FVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGK 426

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG  + + ++FD +   + +AWN+++  + Q+GL   AI  F  M   G++P  V+  ++
Sbjct: 427 CGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNL 486

Query: 290 LSASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VER 347
           L   ++   +++G     ++  I G+       S +I+   + G L++AE   + M  E 
Sbjct: 487 LKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEP 546

Query: 348 DIVTW 352
           ++  W
Sbjct: 547 NVFGW 551



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 117/282 (41%), Gaps = 56/282 (19%)

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRL 420
           SD    + ++  YA+ + ++  KQ+   +I    L +  L N  L  Y+  G      +L
Sbjct: 73  SDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKL 132

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
           F +M       N++SW S+I GF  N +  EA   F QM+   ++  + T   L S    
Sbjct: 133 FDKMS----QRNMVSWTSIITGFAHNSRFQEALSSFCQMR---IEGEIATQFALSS---- 181

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
                                        L ACT + +++ G  +H  +++        +
Sbjct: 182 ----------------------------VLQACTSLGAIQFGTQVHCLVVKCGFGCELFV 213

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
            ++L DMY+KCG +  A + F+  P K+  ++ +MI G+  +G   +AL  +  +    +
Sbjct: 214 GSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDV 273

Query: 601 DPDSITFTNILNACS-----------HAGLVNEGLEL--FVG 629
             D     + L+ACS           HA ++  G E   F+G
Sbjct: 274 FIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIG 315



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 102/211 (48%), Gaps = 19/211 (9%)

Query: 490 FFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS-LVDM 547
           F + +  +G K S T T+   +        L  G+ +H  LIR   CLP   +++  +++
Sbjct: 61  FLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGG-CLPNTFLSNHFLNL 119

Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
           Y+KCG +    ++FD    + +  + ++I+G+A +    EAL+ F  ++ +G        
Sbjct: 120 YSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFAL 179

Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC-------VVNLLSRCGNLDEAL 660
           +++L AC+  G +  G ++   +     VK     FGC       + ++ S+CG L +A 
Sbjct: 180 SSVLQACTSLGAIQFGTQVHCLV-----VKCG---FGCELFVGSNLTDMYSKCGELSDAC 231

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELA 691
           +    MPC  DA +  S++   VK+ + + A
Sbjct: 232 KAFEEMPC-KDAVLWTSMIDGFVKNGDFKKA 261


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  317 bits (812), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 196/671 (29%), Positives = 344/671 (51%), Gaps = 75/671 (11%)

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F  +  D   PD F   ++L+ C     +   + VH   +  G     FV++ L+ +Y +
Sbjct: 28  FSSITYDEDLPDFF--DHLLRQCNG---IQHSKQVHSATVVTGAYCSAFVSARLVSIYSR 82

Query: 230 CGDLEEARKVFDGM---IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
            G + +ARKVF         N + WNS+I   V +G   EA++++ +M   GV     + 
Sbjct: 83  YGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTF 142

Query: 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE 346
             +L AS+NL A +  K  H   V  G +    +G+ +I  Y+K+  ++DA  VF +M  
Sbjct: 143 PLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRI 202

Query: 347 RDIVTWNLLIASY-----------------VQSGQSDVVVASSIVDMYAKCERIDNAKQV 389
           + +V+WN +++ Y                 ++  + + V  +S++  +A+C  ++    +
Sbjct: 203 KSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVL 262

Query: 390 FNSIILRDV---------------------------------------VLWNTLLAAYAD 410
           F  + ++ V                                          N L+  Y  
Sbjct: 263 FCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGK 322

Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG----VQP 466
            G  G+A +LF++M+++    N++SWN++I  F  +G  ++A ++  Q++ +     ++P
Sbjct: 323 GGGVGDAEKLFHEMKVK----NLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKP 378

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIH 526
           N+ITW+ +I G      G E++  F++M    +K ++ TI   LS C  +A+L  GR +H
Sbjct: 379 NVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSICAMLAALNLGREMH 438

Query: 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586
           G++IR  +     +   L++MY KCG+      VF+   +++   +N+MI+GY  HGL  
Sbjct: 439 GHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGK 498

Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
           +ALA F ++ + G  PD +TF   L+ACSHAGLV EG  LF  M  + +++P +EH+ C+
Sbjct: 499 DALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYACM 558

Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           V+LL R G ++EA  +I  MP +P+A+I  SLL++C    +T+LAE  +  +  L     
Sbjct: 559 VDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDLAEEAAAKISNLNSKIT 618

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVA---CDRSHP 763
           G+++ LSN +AAS RW + ++VR   + KGL+K PG SWI++ +++++F A         
Sbjct: 619 GSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGWSWIEVKKKVYMFKAGYTISEGLE 678

Query: 764 KTEEIYATLAL 774
           K +EI   LA 
Sbjct: 679 KVDEILHDLAF 689



 Score =  155 bits (393), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 210/465 (45%), Gaps = 109/465 (23%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFS--------- 149
           + +H  +++ G  F  + +V  +L+  YAK + +D A ++F ++R+K+V S         
Sbjct: 159 KNLHCHVVQFG--FQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYA 216

Query: 150 --------------------------WAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
                                     W +++  + R G  E+ ++ F +M+  GV P   
Sbjct: 217 YNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAE 276

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
           +L  VL  C  L  +  G+ +HGY++K GF+  +F  ++LI +YGK G + +A K+F  M
Sbjct: 277 MLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEM 336

Query: 244 IARNVVAWNSM---------------------------------------IVGYVQNGLN 264
             +N+V+WN++                                       I G+   GL 
Sbjct: 337 KVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLG 396

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL-GSS 323
           EE++ VF +M L  V+   V++ S+LS  A L AL+ G++ H   +   M+ DNVL G+ 
Sbjct: 397 EESLEVFRKMQLANVKANSVTIASVLSICAMLAALNLGREMHGHVIRARMD-DNVLVGNG 455

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
           +IN Y+K G  +   +VF ++  RD ++WN +IA Y   G     +A+            
Sbjct: 456 LINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGKDALAT------------ 503

Query: 384 DNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNS 438
                 FN +I      D V +   L+A +  G   E   LF QM Q   I P I  +  
Sbjct: 504 ------FNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYAC 557

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           ++    R G + EA ++   ++ + ++PN   W++L+     NSC
Sbjct: 558 MVDLLGRAGLVEEASNI---IKGMPMEPNAYIWSSLL-----NSC 594



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 168/372 (45%), Gaps = 45/372 (12%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +SS ++   + E + L  +M+ +      E+   +L  C     + +GQ IH  ++K G 
Sbjct: 247 LSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGG- 305

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKAL--- 167
            F    + +  L+  Y K   +  A +LF  ++VKN+ SW A+I      G+ +KAL   
Sbjct: 306 -FNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELL 364

Query: 168 ------------------------------IG------FVEMQEDGVSPDNFVLPNVLKA 191
                                         +G      F +MQ   V  ++  + +VL  
Sbjct: 365 SQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSI 424

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C  L  +  GR +HG+V++   D  V V + LI+MY KCG  +    VF+ +  R+ ++W
Sbjct: 425 CAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSISW 484

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           NSMI GY  +GL ++A+  F  M   G  P  V+  + LSA ++   + EG    +    
Sbjct: 485 NSMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQ 544

Query: 312 N-GMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVV- 368
           N  +E +    + +++   + GL+E+A  +   M +E +   W+ L+ S      +D+  
Sbjct: 545 NFKIEPEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDLAE 604

Query: 369 -VASSIVDMYAK 379
             A+ I ++ +K
Sbjct: 605 EAAAKISNLNSK 616


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  317 bits (812), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 275/479 (57%), Gaps = 30/479 (6%)

Query: 321 GSSIINFYSKVGLLEDAEVVFSR-----MVERDIVTWNLLIASYVQ---SGQS------- 365
           G+  I F++ V  L      F R     M  R +  WN +++ Y +    GQ+       
Sbjct: 41  GTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVM 100

Query: 366 ---DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
              +V+  +++V  YAK + ++ A++ F+ +  R VV WN +L+ YA  G + EA RLF 
Sbjct: 101 PERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFD 160

Query: 423 QMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482
           +M   G   N ++WN++I  ++R G ++ A+ +F  M       N++TW ++I+G  QN 
Sbjct: 161 EML--GAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPG----RNVVTWNSMIAGYAQNG 214

Query: 483 CGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541
               AI  F+EM+    + P   T+   +SAC  + +L  G  +  +L  + + L     
Sbjct: 215 QSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGH 274

Query: 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601
            +++ MY++CG++  AKRVF    ++++  YN +ISG+A HG  VEA+ L   +++ GI+
Sbjct: 275 NAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIE 334

Query: 602 PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661
           PD +TF  +L ACSHAGL+ EG ++F  +       P+++H+ C+V+LL R G L++A R
Sbjct: 335 PDRVTFIGVLTACSHAGLLEEGRKVFESI-----KDPAIDHYACMVDLLGRVGELEDAKR 389

Query: 662 VILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721
            +  MP +P A + GSLL+      + EL E  +  L +LEPDN GN++ LSN YA++GR
Sbjct: 390 TMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGR 449

Query: 722 WNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           W +V ++R+ MK+ G++K  G SW++ G +LH F+  DRSH ++++IY  L  L   +R
Sbjct: 450 WKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMR 508



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 208/474 (43%), Gaps = 129/474 (27%)

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224
           K ++ + +MQ  GV PD FV P ++K+ G  G +GF    H +VLK+G     FV +++I
Sbjct: 13  KVVLMYEQMQGCGVRPDAFVYPILIKSAGTGG-IGF----HAHVLKLGHGSDAFVRNAVI 67

Query: 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284
           DMY        ARKV D         WN+M+ GY +     +A  +F       V P R 
Sbjct: 68  DMY--------ARKVAD---------WNAMVSGYWKWESEGQAQWLF------DVMPERN 104

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
            +T                                  ++++  Y+KV  LE A   F  M
Sbjct: 105 VIT---------------------------------WTAMVTGYAKVKDLEAARRYFDCM 131

Query: 345 VERDIVTWNLLIASYVQSGQSD---------------VVVASSIVDMYAKCERIDNAKQV 389
            ER +V+WN +++ Y Q+G ++                V  ++++  Y +   +D+A+++
Sbjct: 132 PERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKL 191

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIIS------------- 435
           FN++  R+VV WN+++A YA  G+S  A  LF +M   + ++P+ ++             
Sbjct: 192 FNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGA 251

Query: 436 -----W-----------------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
                W                 N++I  + R G M +AK +F +M +     +++++ T
Sbjct: 252 LELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMAT----RDVVSYNT 307

Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR----AIHGYL 529
           LISG   +  G EAI     M E GI+P   T    L+AC+    L  GR    +I    
Sbjct: 308 LISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPA 367

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMH 582
           I H  C        +VD+  + G +  AKR  +  P +    VY ++++   +H
Sbjct: 368 IDHYAC--------MVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIH 413



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 188/423 (44%), Gaps = 63/423 (14%)

Query: 84  ELLQGCVYKRDMYT-----------GQQIHARILKNG---DFFARNEYVE---------T 120
           E +QGC  + D +            G   HA +LK G   D F RN  ++          
Sbjct: 19  EQMQGCGVRPDAFVYPILIKSAGTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARKVADWN 78

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            +V  Y K ++   A  LF  +  +NV +W A++    +V   E A   F  M E  V  
Sbjct: 79  AMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVS 138

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV------FVASSLIDMYGKCGDLE 234
            N +L          G+   G A     L   FD  +         +++I  Y + GDL+
Sbjct: 139 WNAMLS---------GYAQNGLAEEALRL---FDEMLGAYRNSVTWNAMISAYMRVGDLD 186

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLEGVEPTRVSVTSILSAS 293
            ARK+F+ M  RNVV WNSMI GY QNG +  AI +F EM T + + P  V++ S++SA 
Sbjct: 187 SARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISAC 246

Query: 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWN 353
            +L AL+ G         N ++L     +++I  YS+ G +EDA+ VF  M  RD+V++N
Sbjct: 247 GHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYN 306

Query: 354 LLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
            LI+ +   G                 E I+    +    I  D V +  +L A +  G 
Sbjct: 307 TLISGFAAHGHG--------------VEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGL 352

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
             E  ++F     E I    I   + ++  L  G++ E +D    M+ + ++P+   + +
Sbjct: 353 LEEGRKVF-----ESIKDPAIDHYACMVDLL--GRVGELEDAKRTMERMPMEPHAGVYGS 405

Query: 474 LIS 476
           L++
Sbjct: 406 LLN 408


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  317 bits (812), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 187/596 (31%), Positives = 318/596 (53%), Gaps = 35/596 (5%)

Query: 204 VHGYVLKVGFDG-CVFVASSLIDMYGK-CGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           +H   +K G     +F+   +I    K  GD+  ARKVFD +   +V  WN+MI GY + 
Sbjct: 54  IHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRI 113

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV-L 320
             +E  + ++  M +  ++P   +   +L       AL  GK     AVI+G    N+ +
Sbjct: 114 NCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFV 173

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ--------------SGQSD 366
               I+ +S  GL+  A  +F      ++VTWN++++ Y +                + +
Sbjct: 174 QKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCE 233

Query: 367 VVVASSI--VDMYAKCERIDN---AKQVFNS-----IILRDVVLWNTLLAAYADLGRSGE 416
            V  +S+  V M + C ++ +    K ++N      I+  +++L N L+  +A  G    
Sbjct: 234 CVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDA 293

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           A  +F +M+    + ++ISW S++ GF    +++ A+  F QM     + + ++WT +I 
Sbjct: 294 ARGVFDEMK----TRDVISWTSIVTGFANTCRIDLARKYFDQMP----ERDYVSWTAMID 345

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           G  + +   E +  F++M  + +KP   T+   L+AC  + +L  G     Y+ ++ +  
Sbjct: 346 GYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKN 405

Query: 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ 596
            T I  +L+DMY KCGN+ +AK++F+    K+   + AMI G A +G   EAL +F  + 
Sbjct: 406 DTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYML 465

Query: 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
           +  + PD IT+  ++ AC+H GLV +G   F  M   H +KP++ H+GC+V+LL R G+L
Sbjct: 466 EASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHL 525

Query: 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
            EAL VI+ MP  P++ + GSLL  C      +LAE  +  +L+LEP+N   YV L N Y
Sbjct: 526 KEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIY 585

Query: 717 AASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           AA  +W  +  VR +M E+G++K PGCS +++   ++ FVA D+SHP+++EIYA L
Sbjct: 586 AACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKL 641



 Score =  182 bits (461), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 140/525 (26%), Positives = 235/525 (44%), Gaps = 69/525 (13%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDV--ASRLFCRL 142
           LL+ C     MY   QIH++ +K G   + N    TK+++F    ++ DV  A ++F  +
Sbjct: 41  LLETC---NTMYEINQIHSQTIKTG--LSSNHLFLTKVIIFCCTKESGDVYYARKVFDEI 95

Query: 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
              +VF W  +I    R+  SE  +  +  M    + PD F  P +LK       + +G+
Sbjct: 96  PQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGK 155

Query: 203 AVHGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
            +  + +  GF D  +FV    I ++  CG +  ARK+FD      VV WN ++ GY + 
Sbjct: 156 VLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRF 215

Query: 262 GLNEEAIRVFYEM--TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM-ELDN 318
              EE+ R+F EM    E V P  V++  +LSA + L  L  GK  +   +  G+ E + 
Sbjct: 216 KRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNL 275

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
           +L +++I+ ++  G ++ A  VF  M  RD+++W                  +SIV  +A
Sbjct: 276 ILENALIDMFASCGEMDAARGVFDEMKTRDVISW------------------TSIVTGFA 317

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS--- 435
              RID A++ F+ +  RD V W  ++  Y  + R  E   LF  MQ+  + P+  +   
Sbjct: 318 NTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVS 377

Query: 436 ---------------W-----------------NSVILGFLRNGQMNEAKDMFLQMQSLG 463
                          W                 N++I  + + G + +AK +F +MQ   
Sbjct: 378 ILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ--- 434

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
            + +  TWT +I GL  N  G EA+  F  MLE  + P   T    + ACT V  +  G+
Sbjct: 435 -KKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGK 493

Query: 524 AIHGYL-IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
                + ++H +         +VD+  + G++ +A  V    P K
Sbjct: 494 HFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVK 538



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 161/343 (46%), Gaps = 36/343 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEM--KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKN 108
           +S  ++ K+  E+  L  EM  KC            +L  C   +D+  G+ I+ + +K 
Sbjct: 209 LSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKE 268

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII---GLNCRVGLSEK 165
           G     N  +E  L+  +A C  +D A  +F  ++ ++V SW +I+      CR+ L+ K
Sbjct: 269 G-IVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARK 327

Query: 166 ----------------------------ALIGFVEMQEDGVSPDNFVLPNVLKACGALGW 197
                                        L  F +MQ   V PD F + ++L AC  LG 
Sbjct: 328 YFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGA 387

Query: 198 VGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVG 257
           +  G     Y+ K       F+ ++LIDMY KCG++E+A+K+F+ M  ++   W +MIVG
Sbjct: 388 LELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVG 447

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA-VAVINGMEL 316
              NG  EEA+ +F  M    V P  ++   ++ A  ++  + +GK   + +AV +G++ 
Sbjct: 448 LANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKP 507

Query: 317 DNVLGSSIINFYSKVGLLEDA-EVVFSRMVERDIVTWNLLIAS 358
           +      +++   + G L++A EV+ +  V+ + + W  L+ +
Sbjct: 508 NLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGA 550


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  317 bits (812), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 183/575 (31%), Positives = 301/575 (52%), Gaps = 93/575 (16%)

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           S+L A   +     GK+ H   +  G++ D  +G++++  Y +   +E A +VF +M+ER
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 348 DIVTWNLLIAS------------------YVQSGQSDVVVAS------------------ 371
           D+V+W+ +I S                  ++Q   S+V + S                  
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218

Query: 372 ------------------SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
                             +++DMYAKC  +  A+Q+FN +  + VV W  ++A      R
Sbjct: 219 AYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNR 278

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVIL--GF--------------LRNG---------- 447
             E ++LF +MQ E I PN I+  S+I+  GF              LRNG          
Sbjct: 279 LEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATA 338

Query: 448 ---------QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
                     +  A+ +F   Q+     +++ WT ++S   Q +C ++A   F +M  +G
Sbjct: 339 LVDMYGKCSDIRNARALFDSTQN----RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG 394

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558
           ++P+  TI   LS C    +L  G+ +H Y+ +  + +   + T+LVDMYAKCG+I+ A 
Sbjct: 395 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAG 454

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           R+F  + S+++ ++NA+I+G+AMHG   EAL +F  ++++G+ P+ ITF  +L+ACSHAG
Sbjct: 455 RLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAG 514

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           LV EG +LF  M     + P +EH+GC+V+LL R G LDEA  +I +MP  P+  + G+L
Sbjct: 515 LVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGAL 574

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           ++ C      +L E  +  LL++EP+N G  V +SN YAA+ RW++ + VR  MK  G++
Sbjct: 575 VAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMK 634

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           K PG S I++   +H F+  D+SHP+   I   LA
Sbjct: 635 KEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLA 669



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/445 (29%), Positives = 226/445 (50%), Gaps = 24/445 (5%)

Query: 37  DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNF-QIGPEIYGELLQGCVY--KR 93
           D   E    S+   I SLS+ K+   A++L+ EM   NF Q+ P     +    ++    
Sbjct: 153 DKMMERDVVSWSTMIRSLSRNKEFDMALELIREM---NFMQVRPSEVAMVSMVNLFADTA 209

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           +M  G+ +HA +++N +         T L+  YAKC  L +A +LF  L  K V SW A+
Sbjct: 210 NMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAM 269

Query: 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213
           I    R    E+    F+ MQE+ + P+   + +++  CG  G +  G+ +H Y+L+ GF
Sbjct: 270 IAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGF 329

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
              + +A++L+DMYGKC D+  AR +FD    R+V+ W +M+  Y Q    ++A  +F +
Sbjct: 330 SVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQ 389

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M   GV PT+V++ S+LS  A   ALD GK  H+      +E+D +L +++++ Y+K G 
Sbjct: 390 MRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGD 449

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393
           +  A  +F   + RDI  WN +I  +   G  +       +D++A+ ER          +
Sbjct: 450 INAAGRLFIEAISRDICMWNAIITGFAMHGYGE-----EALDIFAEMER--------QGV 496

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFLRNGQMNEA 452
              D+     LL A +  G   E  +LF +M    G+ P I  +  ++    R G ++EA
Sbjct: 497 KPNDITFIG-LLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEA 555

Query: 453 KDMFLQMQSLGVQPNLITWTTLISG 477
            +M   ++S+ ++PN I W  L++ 
Sbjct: 556 HEM---IKSMPIKPNTIVWGALVAA 577



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/493 (25%), Positives = 226/493 (45%), Gaps = 97/493 (19%)

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFD 241
           NF+ P+VLKACG + W   G+ +HG+VLK G D  VFV ++L+ MYG+C  +E AR VFD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 242 GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301
            M+ R+VV+W++MI    +N   + A+ +  EM    V P+ V++ S+++  A+   +  
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 302 GKQAHAVAV--INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
           GK  HA  +   N   +     +++++ Y+K G L  A  +F+ + ++ +V+W  +IA  
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 360 VQSGQSD----------------------------------------------------V 367
           ++S + +                                                    +
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSL 333

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
            +A+++VDMY KC  I NA+ +F+S   RDV++W  +L+AYA      +A  LF QM+  
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393

Query: 428 GISPNIISWNSVI----------LG-------------------------FLRNGQMNEA 452
           G+ P  ++  S++          LG                         + + G +N A
Sbjct: 394 GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 453

Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
             +F++     +  ++  W  +I+G   +  G EA+  F EM   G+KP+  T    L A
Sbjct: 454 GRLFIE----AISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHA 509

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPI--VTSLVDMYAKCGNIHQAKRVFDISPSK-EL 569
           C+    +  G+ +   ++ H   L   I     +VD+  + G + +A  +    P K   
Sbjct: 510 CSHAGLVTEGKKLFEKMV-HTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 568

Query: 570 PVYNAMISGYAMH 582
            V+ A+++   +H
Sbjct: 569 IVWGALVAACRLH 581



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 225/472 (47%), Gaps = 62/472 (13%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G++IH  +LK G    R+ +V   L++ Y +C  ++ A  +F ++  ++V SW+ +I   
Sbjct: 113 GKEIHGFVLKKG--LDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSL 170

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            R    + AL    EM    V P    + +++        +  G+A+H YV++   +  +
Sbjct: 171 SRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHM 230

Query: 218 FV--ASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            V   ++L+DMY KCG L  AR++F+G+  + VV+W +MI G +++   EE  ++F  M 
Sbjct: 231 GVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQ 290

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            E + P  +++ S++       AL  GKQ HA  + NG  +   L +++++ Y K   + 
Sbjct: 291 EENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIR 350

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSG-------------------------------- 363
           +A  +F     RD++ W  ++++Y Q+                                 
Sbjct: 351 NARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCA 410

Query: 364 --------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403
                               + D ++ +++VDMYAKC  I+ A ++F   I RD+ +WN 
Sbjct: 411 VAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNA 470

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSL 462
           ++  +A  G   EA  +F +M+ +G+ PN I++  ++      G + E K +F +M  + 
Sbjct: 471 IITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTF 530

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSAC 513
           G+ P +  +  ++  L +    +EA     EM+++  IKP+T      ++AC
Sbjct: 531 GLVPQIEHYGCMVDLLGRAGLLDEA----HEMIKSMPIKPNTIVWGALVAAC 578


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/542 (32%), Positives = 302/542 (55%), Gaps = 39/542 (7%)

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           NV++ N +I  ++++G    A+RVF  MT++    T V+  S+L+  +N      GK   
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVK----TTVTWNSMLAGYSN----RRGKIKV 55

Query: 307 AVAVINGMELDNVLGSSI-INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           A  + + +   ++   +I +  Y     +E A + F +M  +D  +WN +I+ + Q+G  
Sbjct: 56  ARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGM- 114

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
                            +D A+++F  + +R+ V WN +++ Y + G    A +LF    
Sbjct: 115 -----------------MDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLF---- 153

Query: 426 LEGISP--NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
              ++P  ++++W ++I GF++ G++  A+  F +M       NL+TW  +I+G  +N  
Sbjct: 154 --EVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMP----MKNLVTWNAMIAGYIENCQ 207

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
               +  F+ M+E+G +P+ ++++  L  C+++++L+ G+ +H  + +  +       TS
Sbjct: 208 AENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTS 267

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+ MY KCG++  A ++F + P K++  +NAMISGYA HG   +AL LF  ++ +G+ PD
Sbjct: 268 LLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPD 327

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            ITF  +L+AC+HAG V+ G+E F  M  D+ V+   +H+ CVV+LL R G L EA+ +I
Sbjct: 328 WITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLI 387

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
             MP  P + I G+LL  C      ELAE+ +++LL L+P++   YV L+N YAA  RW+
Sbjct: 388 KKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWD 447

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVS 783
            V+ VR  MK+  + K PG SWI++   +H F + DR HP+   I+  L  L   +RL  
Sbjct: 448 HVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAG 507

Query: 784 KV 785
            V
Sbjct: 508 YV 509



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 201/467 (43%), Gaps = 72/467 (15%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
           V  ++ +I  + + GDL  A +VF+ M  +  V WNSM+ GY         I+V  ++  
Sbjct: 5   VISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSN---RRGKIKVARQLFD 61

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL-DNVLGSSIINFYSKVGLLE 335
              EP   S   +L+       L       A    + M + D    +++I+ +S+ G+++
Sbjct: 62  RIPEPDIFSYNIMLACY-----LHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMD 116

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSD-------------VVVASSIVDMYAKCER 382
            A  +F  M  R+ V+WN +I+ YV+SG  D             VV  ++++  + K  +
Sbjct: 117 QARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGK 176

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG 442
           I+ A++ F  + ++++V WN ++A Y +  ++    +LF +M   G  PN  S +SV+LG
Sbjct: 177 IELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLG 236

Query: 443 -----------------------------------FLRNGQMNEAKDMFLQMQSLGVQPN 467
                                              + + G + +A  +FL M     Q +
Sbjct: 237 CSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP----QKD 292

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
           ++TW  +ISG  Q+  G +A+  F +M + G+KP   T    LSAC     +  G     
Sbjct: 293 VVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFN 352

Query: 528 YLIRHDLCLPTPI-VTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMHGLA 585
            ++R       P   T +VD+  + G + +A  +    P K    ++  ++    +H   
Sbjct: 353 SMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNL 412

Query: 586 VEALALFKNLQQKGIDPDS----ITFTNI---LNACSHAGLVNEGLE 625
             A    KNL    +DP+S    +   N+   +N   H  +V   ++
Sbjct: 413 ELAEFAAKNLLN--LDPESAAGYVQLANVYAAMNRWDHVAMVRRSMK 457



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 129/260 (49%), Gaps = 16/260 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  S+   + +A +L   M  RN       +  ++ G V   D+   +Q+    
Sbjct: 101 SWNTMISGFSQNGMMDQARELFLVMPVRN----SVSWNAMISGYVESGDLDLAKQLFEVA 156

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG---LNCRVGL 162
                   R+    T ++  + K   +++A + F  + +KN+ +W A+I     NC+   
Sbjct: 157 P------VRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQ--- 207

Query: 163 SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222
           +E  L  F  M E G  P+   L +VL  C  L  +  G+ VH  + K      +   +S
Sbjct: 208 AENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTS 267

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L+ MY KCGDLE+A K+F  M  ++VV WN+MI GY Q+G  E+A+ +F +M  EG++P 
Sbjct: 268 LLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPD 327

Query: 283 RVSVTSILSASANLDALDEG 302
            ++  ++LSA  +   +D G
Sbjct: 328 WITFVAVLSACNHAGFVDLG 347



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 39/241 (16%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           +++   +D A  LF  + V+N  SW A+I              G+VE  +  ++   F +
Sbjct: 109 FSQNGMMDQARELFLVMPVRNSVSWNAMIS-------------GYVESGDLDLAKQLFEV 155

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
             V             R+V  +             +++I  + K G +E A K F+ M  
Sbjct: 156 APV-------------RSVVAW-------------TAMITGFMKFGKIELAEKYFEEMPM 189

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           +N+V WN+MI GY++N   E  +++F  M   G  P   S++S+L   +NL AL  GKQ 
Sbjct: 190 KNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQV 249

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           H +   + +  +   G+S+++ Y K G LEDA  +F  M ++D+VTWN +I+ Y Q G  
Sbjct: 250 HQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAG 309

Query: 366 D 366
           +
Sbjct: 310 E 310



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 142/332 (42%), Gaps = 63/332 (18%)

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT---------- 479
           S N+IS N VI   +R+G +N A  +F   +S+ V+   +TW ++++G +          
Sbjct: 2   SSNVISSNRVITNHIRSGDLNSALRVF---ESMTVKTT-VTWNSMLAGYSNRRGKIKVAR 57

Query: 480 ----------------------QNSCGNEAILFFQEMLETGIKPSTTTIT-CALSACTD- 515
                                  N+    A LFF +M         T I+  + +   D 
Sbjct: 58  QLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQ 117

Query: 516 ------VASLRNGRA----IHGYLIRHDLCLPTPIV-----------TSLVDMYAKCGNI 554
                 V  +RN  +    I GY+   DL L   +            T+++  + K G I
Sbjct: 118 ARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKI 177

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A++ F+  P K L  +NAMI+GY  +  A   L LFK + + G  P+  + +++L  C
Sbjct: 178 ELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGC 237

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
           S+   +  G ++   +     V  ++     ++++  +CG+L++A ++ L MP   D   
Sbjct: 238 SNLSALKLGKQVH-QLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP-QKDVVT 295

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQ--LEPD 704
             +++S   +    E A Y+ + +    ++PD
Sbjct: 296 WNAMISGYAQHGAGEKALYLFDKMRDEGMKPD 327


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 209/659 (31%), Positives = 336/659 (50%), Gaps = 109/659 (16%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL---RVKNVFSWAAII 154
            +Q+HA IL +G   +  E +  + ++  A   +  VA  +   L   +  + FSWA  I
Sbjct: 20  AKQVHALILIHG--LSHLEPILARQILISASNYSATVAQYVHSVLHHSKSPDSFSWACAI 77

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF- 213
             + + G  ++A   +V+MQ  G+ P  F L + LKAC  + +   G ++HG V K GF 
Sbjct: 78  RFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGISIHGQVQKFGFS 137

Query: 214 ---DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270
              DG ++V ++L+D Y K GD+E ARK+FD M  RNVV+WNSM+ GY+++G    A RV
Sbjct: 138 CGGDG-IYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRV 196

Query: 271 FYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK 330
           F E+      P +                                 D +  +S+I+ Y++
Sbjct: 197 FDEI------PQK---------------------------------DVISWNSMISGYAR 217

Query: 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVF 390
            G +E A  +F +M ER+  +WN +I+ +V+ G                   ID+A+  F
Sbjct: 218 AGDMEKASSLFQQMPERNFASWNAMISGHVEFGD------------------IDSARSFF 259

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450
           +++  ++ V W T+++ Y+  G    A  LF Q+       +++ +N++I  + +N + N
Sbjct: 260 DAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVG----GKDLLLFNAMIACYAQNSRPN 315

Query: 451 EAKDMFLQMQS--LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           EA ++F  M +  + VQP+ +T  ++IS     +C     L F   +E+ ++        
Sbjct: 316 EALNLFNNMLNPYVNVQPDEMTLASVIS-----ACSQLGDLRFGPWIESYMR-------- 362

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
                      R G  + G+L            T+L+D+YAKCG+I +A  +F     K+
Sbjct: 363 -----------RLGIEMDGHL-----------ATALLDLYAKCGSIDKAYELFHGLRKKD 400

Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
           L  Y AMI G  ++G A++A+ LF  +    I P+SITF  +L A +HAGLV EG   F 
Sbjct: 401 LVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFT 460

Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
            M   + + PS++H+G +V+L  R G L EAL +I +MP  P A + G+LL  C   N  
Sbjct: 461 SM-KKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNV 519

Query: 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
           E  E  ++H  +LEPD  G    LSN YA+  RW++V ++R + KEKG  K PGCSW++
Sbjct: 520 EFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCSWME 578



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 174/368 (47%), Gaps = 39/368 (10%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   IS  ++   + +A  L  +M  RNF      +  ++ G V   D+ + +     +
Sbjct: 207 SWNSMISGYARAGDMEKASSLFQQMPERNF----ASWNAMISGHVEFGDIDSARSFFDAM 262

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            +      +N      ++  Y+KC  +D A  LF ++  K++  + A+I    +     +
Sbjct: 263 PQ------KNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNE 316

Query: 166 ALIGFVEMQED--GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSL 223
           AL  F  M      V PD   L +V+ AC  LG + FG  +  Y+ ++G +    +A++L
Sbjct: 317 ALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATAL 376

Query: 224 IDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283
           +D+Y KCG +++A ++F G+  +++VA+ +MI+G   NG   +AI++F EM    + P  
Sbjct: 377 LDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNS 436

Query: 284 VSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS-----IINFYSKVGLLEDA- 337
           ++   +L+A  +   ++EG +         M+  N++ S      +++ + + G L++A 
Sbjct: 437 ITFIGLLTAYNHAGLVEEGYR-----CFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEAL 491

Query: 338 EVVFSRMVERDIVTWNLLI---------------ASYVQSGQSDVVVASSIV-DMYAKCE 381
           E++ S  ++     W  L+               A +    + D     S++ ++YA  E
Sbjct: 492 ELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGE 551

Query: 382 RIDNAKQV 389
           R D+ K++
Sbjct: 552 RWDDVKRL 559


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 219/736 (29%), Positives = 352/736 (47%), Gaps = 105/736 (14%)

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR--VKNVFSW 150
           RD  + + IHA  L+ G     +  V   L+  YA+C  L  A  +F  +     +  S+
Sbjct: 73  RDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSF 132

Query: 151 AAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC----GALGWVGFGRAVHG 206
            ++I   C     + AL     M   G    +F L +VL+A      A   V  GR  H 
Sbjct: 133 NSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHA 192

Query: 207 YVLKVGF--DGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR--NVVAWNSMIVGYVQNG 262
           + LK G       F  ++L+ MY + G + +A+++F G      +VV WN+M+   VQ+G
Sbjct: 193 FALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSG 252

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
           + +EA++  Y+M   GV P  V+  S L A + L+ LD G++ HA               
Sbjct: 253 MFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAY-------------- 298

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
                     +++D E+                         ++  VAS++VDMYA  E+
Sbjct: 299 ----------VIKDDELA------------------------ANSFVASALVDMYATHEQ 324

Query: 383 IDNAKQVFNSI--ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE------------- 427
           +  A+QVF+ +    + + +WN ++  YA  G   EA RLF +M+ E             
Sbjct: 325 VGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASV 384

Query: 428 -----------------------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
                                  G++ N    N+++  + R G+ + A+ +F  +     
Sbjct: 385 LPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVD---- 440

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEML---ETGIKPSTTTITCALSACTDVASLRN 521
            P++++W TLI+G        +A    +EM    E G+ P+  T+   L  C  +A+   
Sbjct: 441 LPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPAR 500

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G+ IHGY +RH L     + ++LVDMYAKCG +  ++ VFD  P +    +N +I  Y M
Sbjct: 501 GKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGM 560

Query: 582 HGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
           HGL  EA  LF  +   G   P+ +TF   L ACSH+G+V+ GL+LF  M  DH V+P+ 
Sbjct: 561 HGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTP 620

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPC-DPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           +   CVV++L R G LDEA  ++ +M   +       ++L  C       L E   E LL
Sbjct: 621 DILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLL 680

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           +LEP+   +YV L N Y+A+G+W   ++VR  M+ +G+ K PGCSWI++   +H F+A +
Sbjct: 681 ELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGE 740

Query: 760 RSHPKTEEIYATLALL 775
            +HP +EE++A +  L
Sbjct: 741 SAHPASEEVHAHMEAL 756



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 134/438 (30%), Positives = 218/438 (49%), Gaps = 35/438 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S L +     EAV  L +M     +     +   L  C     +  G+++HA ++K+ D
Sbjct: 245 VSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKD-D 303

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVFSWAAIIGLNCRVGLSEKALI 168
             A N +V + LV  YA  + +  A ++F  +    K +  W A+I    + G+ E+AL 
Sbjct: 304 ELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALR 363

Query: 169 GFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
            F  M+ E G  P    + +VL AC          AVHGYV+K G  G  FV ++L+DMY
Sbjct: 364 LFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMY 423

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLE--GVEPTRV 284
            + G  + AR++F  +   +VV+WN++I G V  G   +A ++  EM  LE  GV P  +
Sbjct: 424 ARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAI 483

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           ++ ++L   A L A   GK+ H  AV + ++ D  +GS++++ Y+K G L  +  VF R+
Sbjct: 484 TLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRL 543

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVD-MYAKCERIDNAKQVFNSIILRDVVLWNT 403
             R+ +TWN+LI +Y   G      A+ + D M A  E   N                 T
Sbjct: 544 PRRNTITWNVLIMAYGMHGLGG--EATVLFDRMTASGEARPNEV---------------T 586

Query: 404 LLAAYADLGRSGEASR---LFYQMQLE-GI--SPNIISWNSVILGFLRNGQMNEAKDMFL 457
            +AA A    SG   R   LF+ M+ + G+  +P+I++    ILG  R G+++EA  M  
Sbjct: 587 FMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILG--RAGRLDEAYAMVT 644

Query: 458 QMQSLGVQPNLITWTTLI 475
            M++ G Q  +  W+T++
Sbjct: 645 SMET-GEQ-QVSAWSTML 660


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 173/525 (32%), Positives = 285/525 (54%), Gaps = 23/525 (4%)

Query: 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
           ++EA+RV+  M    VE    + T +L       AL++G+  H   +  G      + +S
Sbjct: 55  HKEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNS 114

Query: 324 IINFYSKVGL-LEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVVV 369
           ++ FY+     L  A  VF  M ERD+++WN +I++Y+  G+              ++V 
Sbjct: 115 LLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVT 174

Query: 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
            +S+V   +K   ++ A  VF  + LR+ V WN++++ Y  +G    A  +FYQM     
Sbjct: 175 WNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMP---- 230

Query: 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
              ++SW ++I G+  NG +  A+++F  M       N+++W  +ISG   N   ++A+ 
Sbjct: 231 EKTVVSWTAMISGYATNGDLKSAENIFNHMPV----KNVVSWNAMISGYVHNHEFDQALC 286

Query: 490 FFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
            F  ML  G  +P  TT+   LSAC  + SL +G+ I+ Y+ ++ L L  P+  +L+DM+
Sbjct: 287 VFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMF 346

Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
           AKCG++  AK VF     + +  +  M+SG A++G   EA+ LF  +  +G  PD + F 
Sbjct: 347 AKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFI 406

Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
            +L+AC+H GLV EG  +F  M  +  +KP +EH+GC+V+LL R G L+EA+R    M  
Sbjct: 407 AVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHL 466

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
            P+A I  +LL  C      +L + ++E ++  EP NP     +SN  A+ GRW +V   
Sbjct: 467 KPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSF 526

Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
           R  M+++ + K PGCS IQ+G  +H F+A D  H + +EIY  L+
Sbjct: 527 RVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEIYRALS 571



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 212/446 (47%), Gaps = 55/446 (12%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
           +EA+ + + MK    +     +  LL+     + +  G+ IH  ILK G  F  + +V+ 
Sbjct: 56  KEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLG--FGSSVFVQN 113

Query: 121 KLVVFYAKC-DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
            L+ FYA C + L  A R+F  +  ++V SW ++I      G  + A+    +M E  + 
Sbjct: 114 SLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIV 173

Query: 180 PDNFVLPNVLKACGA------------LGWVGFGRAVHGYVLKVG------------FDG 215
             N V+  + KA                  V +   + GYV ++G             + 
Sbjct: 174 TWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYV-RIGDVRAAQSIFYQMPEK 232

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            V   +++I  Y   GDL+ A  +F+ M  +NVV+WN+MI GYV N   ++A+ VF+ M 
Sbjct: 233 TVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHML 292

Query: 276 LEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
           + G   P + ++ SILSA A+L +L+ GK  ++    N + L   LG+++I+ ++K G +
Sbjct: 293 INGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDV 352

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
           E+A+ VF  M +R I+TW  +++    +G               KC    N   +F+ + 
Sbjct: 353 ENAKEVFHHMSKRCIITWTTMVSGLAVNG---------------KCREAIN---LFDKMC 394

Query: 395 LR----DVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQM 449
           L     D V++  +L+A    G   E  R+F QM  E GI P I  +  ++    R G++
Sbjct: 395 LEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKL 454

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLI 475
            EA     +M    ++PN + W TL+
Sbjct: 455 EEAVRFTARMH---LKPNAVIWATLL 477



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 224/497 (45%), Gaps = 65/497 (13%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
            +LQ C   R++   +Q H +I  +G     ++++  KL+   +  + LD A+       
Sbjct: 7   RILQHCKNIREL---KQTHLQIFIHG--LQHSDFMLPKLITVSSAFNLLDYATH------ 55

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
                               ++AL  +  M+   V  ++F    +LK       +  GR 
Sbjct: 56  --------------------KEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRV 95

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGD-LEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
           +HG +LK+GF   VFV +SL+  Y  C + L  A +VF+ M  R+V++WNSMI  Y+  G
Sbjct: 96  IHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRG 155

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN-VLG 321
             + AI +  +M    +  T  SV   LS + N++         A +V   M L N V  
Sbjct: 156 EIQSAIGLLDKMPERNI-VTWNSVVCGLSKAGNMEL--------AHSVFEQMPLRNEVSW 206

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ-------------SDVV 368
           +S+I+ Y ++G +  A+ +F +M E+ +V+W  +I+ Y  +G               +VV
Sbjct: 207 NSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVV 266

Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQ 423
             ++++  Y      D A  VF+ +++      D     ++L+A A LG       +   
Sbjct: 267 SWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSY 326

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           ++   +  +I   N++I  F + G +  AK++F  M     +  +ITWTT++SGL  N  
Sbjct: 327 IKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMS----KRCIITWTTMVSGLAVNGK 382

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP-TPIVT 542
             EAI  F +M   G KP        LSACT    +  G+ +   +++     P      
Sbjct: 383 CREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYG 442

Query: 543 SLVDMYAKCGNIHQAKR 559
            +VD+  + G + +A R
Sbjct: 443 CMVDLLGRAGKLEEAVR 459



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 158/331 (47%), Gaps = 17/331 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEI-YGELLQGCVYKRDMYTGQQIHARILKNG 109
           +  LSK   +  A  +  +M  RN     E+ +  ++ G V   D+   Q I  ++ +  
Sbjct: 179 VCGLSKAGNMELAHSVFEQMPLRN-----EVSWNSMISGYVRIGDVRAAQSIFYQMPE-- 231

Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
               +     T ++  YA    L  A  +F  + VKNV SW A+I         ++AL  
Sbjct: 232 ----KTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCV 287

Query: 170 FVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
           F  M  +G   PD   L ++L AC  LG +  G+ ++ Y+ K      + + ++LIDM+ 
Sbjct: 288 FHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFA 347

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           KCGD+E A++VF  M  R ++ W +M+ G   NG   EAI +F +M LEG +P  V   +
Sbjct: 348 KCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIA 407

Query: 289 ILSASANLDALDEGKQAHAVAVIN-GMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VE 346
           +LSA  +   ++EGK+     V   G++        +++   + G LE+A    +RM ++
Sbjct: 408 VLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLK 467

Query: 347 RDIVTWNLLIASYVQSGQSDVV--VASSIVD 375
            + V W  L+      G  D++  V   I+D
Sbjct: 468 PNAVIWATLLFCCKIHGNGDLLKSVTEKIMD 498


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 219/736 (29%), Positives = 352/736 (47%), Gaps = 105/736 (14%)

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR--VKNVFSW 150
           RD  + + IHA  L+ G     +  V   L+  YA+C  L  A  +F  +     +  S+
Sbjct: 71  RDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSF 130

Query: 151 AAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC----GALGWVGFGRAVHG 206
            ++I   C     + AL     M   G    +F L +VL+A      A   V  GR  H 
Sbjct: 131 NSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHA 190

Query: 207 YVLKVGF--DGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR--NVVAWNSMIVGYVQNG 262
           + LK G       F  ++L+ MY + G + +A+++F G      +VV WN+M+   VQ+G
Sbjct: 191 FALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSG 250

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
           + +EA++  Y+M   GV P  V+  S L A + L+ LD G++ HA               
Sbjct: 251 MFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAY-------------- 296

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
                     +++D E+                         ++  VAS++VDMYA  E+
Sbjct: 297 ----------VIKDDELA------------------------ANSFVASALVDMYATHEQ 322

Query: 383 IDNAKQVFNSI--ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE------------- 427
           +  A+QVF+ +    + + +WN ++  YA  G   EA RLF +M+ E             
Sbjct: 323 VGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASV 382

Query: 428 -----------------------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
                                  G++ N    N+++  + R G+ + A+ +F  +     
Sbjct: 383 LPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVD---- 438

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEML---ETGIKPSTTTITCALSACTDVASLRN 521
            P++++W TLI+G        +A    +EM    E G+ P+  T+   L  C  +A+   
Sbjct: 439 LPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPAR 498

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G+ IHGY +RH L     + ++LVDMYAKCG +  ++ VFD  P +    +N +I  Y M
Sbjct: 499 GKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGM 558

Query: 582 HGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
           HGL  EA  LF  +   G   P+ +TF   L ACSH+G+V+ GL+LF  M  DH V+P+ 
Sbjct: 559 HGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTP 618

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPC-DPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           +   CVV++L R G LDEA  ++ +M   +       ++L  C       L E   E LL
Sbjct: 619 DILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLL 678

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           +LEP+   +YV L N Y+A+G+W   ++VR  M+ +G+ K PGCSWI++   +H F+A +
Sbjct: 679 ELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGE 738

Query: 760 RSHPKTEEIYATLALL 775
            +HP +EE++A +  L
Sbjct: 739 SAHPASEEVHAHMEAL 754



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 134/438 (30%), Positives = 218/438 (49%), Gaps = 35/438 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S L +     EAV  L +M     +     +   L  C     +  G+++HA ++K+ D
Sbjct: 243 VSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKD-D 301

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVFSWAAIIGLNCRVGLSEKALI 168
             A N +V + LV  YA  + +  A ++F  +    K +  W A+I    + G+ E+AL 
Sbjct: 302 ELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALR 361

Query: 169 GFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
            F  M+ E G  P    + +VL AC          AVHGYV+K G  G  FV ++L+DMY
Sbjct: 362 LFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMY 421

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLE--GVEPTRV 284
            + G  + AR++F  +   +VV+WN++I G V  G   +A ++  EM  LE  GV P  +
Sbjct: 422 ARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAI 481

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           ++ ++L   A L A   GK+ H  AV + ++ D  +GS++++ Y+K G L  +  VF R+
Sbjct: 482 TLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRL 541

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVD-MYAKCERIDNAKQVFNSIILRDVVLWNT 403
             R+ +TWN+LI +Y   G      A+ + D M A  E   N                 T
Sbjct: 542 PRRNTITWNVLIMAYGMHGLGG--EATVLFDRMTASGEARPNEV---------------T 584

Query: 404 LLAAYADLGRSGEASR---LFYQMQLE-GI--SPNIISWNSVILGFLRNGQMNEAKDMFL 457
            +AA A    SG   R   LF+ M+ + G+  +P+I++    ILG  R G+++EA  M  
Sbjct: 585 FMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILG--RAGRLDEAYAMVT 642

Query: 458 QMQSLGVQPNLITWTTLI 475
            M++ G Q  +  W+T++
Sbjct: 643 SMEA-GEQ-QVSAWSTML 658


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 192/606 (31%), Positives = 316/606 (52%), Gaps = 83/606 (13%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           + +  ++LK GF   +   S L+D   KCGD++ AR+VFDGM  R++V WNS+I   +++
Sbjct: 85  KTIQAHMLKSGFPAEI-SGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKH 143

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
             ++EA+ ++  M    V P   +++S+  A ++L    E +++H +AVI G+E+     
Sbjct: 144 RRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEV----- 198

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
                                                      S+V V S++VDMY K  
Sbjct: 199 -------------------------------------------SNVFVGSALVDMYVKFG 215

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
           +   AK V + +  +DVVL   L+  Y+  G   EA + F  M +E + PN  ++ SV++
Sbjct: 216 KTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLI 275

Query: 442 ----------GFLRNGQMNEAK------------DMFLQM----QSLGV-----QPNLIT 470
                     G L +G M ++              M+L+      SL V      PN ++
Sbjct: 276 SCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVS 335

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           WT+LISGL QN     A++ F++M+   IKP++ T++ AL  C+++A    GR IHG + 
Sbjct: 336 WTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVT 395

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           ++         + L+D+Y KCG    A+ VFD     ++   N MI  YA +G   EAL 
Sbjct: 396 KYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALD 455

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF+ +   G+ P+ +T  ++L AC+++ LV EG ELF   F   ++  + +H+ C+V+LL
Sbjct: 456 LFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELF-DSFRKDKIMLTNDHYACMVDLL 514

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
            R G L+EA  ++ T   +PD  +  +LLS C    + E+AE I+  +L++EP + G  +
Sbjct: 515 GRAGRLEEA-EMLTTEVINPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLI 573

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR-SHPKTEEIY 769
            +SN YA++G+WN V +++  MK+  L+KNP  SW++I +E H F+A D  SHP +E+I 
Sbjct: 574 LMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQIL 633

Query: 770 ATLALL 775
             L  L
Sbjct: 634 ENLEEL 639



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 2/308 (0%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I   S++ +  EAV     M     Q     Y  +L  C   +D+  G+ IH  ++K+G 
Sbjct: 239 IVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSG- 297

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            F      +T L+  Y +C  +D + R+F  +   N  SW ++I    + G  E ALI F
Sbjct: 298 -FESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEF 356

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            +M  D + P++F L + L+ C  L     GR +HG V K GFD   +  S LID+YGKC
Sbjct: 357 RKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKC 416

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G  + AR VFD +   +V++ N+MI  Y QNG   EA+ +F  M   G++P  V+V S+L
Sbjct: 417 GCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVL 476

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A  N   ++EG +       + + L N   + +++   + G LE+AE++ + ++  D+V
Sbjct: 477 LACNNSRLVEEGCELFDSFRKDKIMLTNDHYACMVDLLGRAGRLEEAEMLTTEVINPDLV 536

Query: 351 TWNLLIAS 358
            W  L+++
Sbjct: 537 LWRTLLSA 544



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 130/486 (26%), Positives = 223/486 (45%), Gaps = 62/486 (12%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           + +LL+ C+ +R +   + I A +LK+G F A  E   +KLV    KC  +D A ++F  
Sbjct: 68  FSQLLRQCIDERSISGIKTIQAHMLKSG-FPA--EISGSKLVDASLKCGDIDYARQVFDG 124

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
           +  +++ +W ++I    +   S++A+  +  M  + V PD + L +V KA   L      
Sbjct: 125 MSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEA 184

Query: 202 RAVHGYVLKVGFD-GCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           +  HG  + +G +   VFV S+L+DMY K G   EA+ V D +  ++VV   ++IVGY Q
Sbjct: 185 QRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQ 244

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            G + EA++ F  M +E V+P   +  S+L +  NL  +  GK  H + V +G E     
Sbjct: 245 KGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALAS 304

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV----------- 369
            +S++  Y +  L++D+  VF  +   + V+W  LI+  VQ+G+ ++ +           
Sbjct: 305 QTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSI 364

Query: 370 -----------------------------------------ASSIVDMYAKCERIDNAKQ 388
                                                     S ++D+Y KC   D A+ 
Sbjct: 365 KPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARL 424

Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
           VF+++   DV+  NT++ +YA  G   EA  LF +M   G+ PN ++  SV+L    +  
Sbjct: 425 VFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRL 484

Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTIT 507
           + E  ++F   +   +      +  ++  L +     EA     EML T  I P      
Sbjct: 485 VEEGCELFDSFRKDKIMLTNDHYACMVDLLGRAGRLEEA-----EMLTTEVINPDLVLWR 539

Query: 508 CALSAC 513
             LSAC
Sbjct: 540 TLLSAC 545



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 159/357 (44%), Gaps = 41/357 (11%)

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
           ER I     + A  ++SG    +  S +VD   KC  ID A+QVF+ +  R +V WN+L+
Sbjct: 78  ERSISGIKTIQAHMLKSGFPAEISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLI 137

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNS---------------------VILG-- 442
           A      RS EA  ++  M    + P+  + +S                     VILG  
Sbjct: 138 AYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLE 197

Query: 443 -------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
                        +++ G+  EAK +  +++    + +++  T LI G +Q     EA+ 
Sbjct: 198 VSNVFVGSALVDMYVKFGKTREAKLVLDRVE----EKDVVLITALIVGYSQKGEDTEAVK 253

Query: 490 FFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
            FQ ML   ++P+  T    L +C ++  + NG+ IHG +++          TSL+ MY 
Sbjct: 254 AFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYL 313

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           +C  +  + RVF          + ++ISG   +G    AL  F+ + +  I P+S T ++
Sbjct: 314 RCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSS 373

Query: 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
            L  CS+  +  EG ++  G+ + +           +++L  +CG  D A  V  T+
Sbjct: 374 ALRGCSNLAMFEEGRQIH-GIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTL 429


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 297/568 (52%), Gaps = 84/568 (14%)

Query: 247 NVVAWNSMIVGY-VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           N+  +N++I G    N  + E + V+ +M  +G+ P   ++  +L A A   A+ EG++ 
Sbjct: 88  NLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEV 147

Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           H  A+                   K+GL                               S
Sbjct: 148 HGQAI-------------------KMGL------------------------------AS 158

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM- 424
           DV V+++++ MYA C+ I +A++VF++   RD+V W T++  Y  +G + E   LF++M 
Sbjct: 159 DVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMC 218

Query: 425 ----QLEGISPNIISWNSVILGFLRNGQM------------------NEAKDMFLQ---- 458
               Q +G++  I+  +   LG LR G+                   N   DM+L+    
Sbjct: 219 GENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDA 278

Query: 459 ------MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
                  Q + V+ N+++W ++ISGL Q     E++  F++M   G+KP   T+   L++
Sbjct: 279 NFARKVFQEMPVK-NVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNS 337

Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
           C ++  L  G+ +H YL R+ +     I  +LVDMYAKCG+I QA  VF     K++  Y
Sbjct: 338 CANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSY 397

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
            AMI G AMHG   +AL LF  + + GI+PD +TF  +L ACSH GLV EG + F  M +
Sbjct: 398 TAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMST 457

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
            + ++P +EH+GC+V+LL R G ++EA   I  MP +PDA ++G+LL  C    + EL E
Sbjct: 458 IYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGE 517

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
            + + + ++EP   G YV +SN Y+++ RW +  ++R  MKE+ L K PGCS I++   +
Sbjct: 518 SVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVI 577

Query: 753 HVFVACDRSHPKTEEIYATLALLGMHVR 780
           H F   D+SHPK +EIY  L  +  H++
Sbjct: 578 HEFQKGDKSHPKIKEIYKLLDEIMSHLK 605



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 221/472 (46%), Gaps = 60/472 (12%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALD--VASRLFCRLRVKNVFSWAAII-G 155
           +QIHA I+K          + T+L    A+   +D   A  L  +LR  N+  + AII G
Sbjct: 39  KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAIIRG 98

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
           L      S + L+ + +M   G+ PDN+ +P VLKAC     V  G  VHG  +K+G   
Sbjct: 99  LATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLAS 158

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            V+V+++L+ MY  C  +  ARKVFD    R++V+W +MI GYV+ G   E + +F+EM 
Sbjct: 159 DVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMC 218

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING-MELDNVLGSSIINFYSKVGLL 334
            E ++   +++  +LS+ A L  L  G++ H   + N  + LD  +G+++++ Y K G  
Sbjct: 219 GENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDA 278

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQ------------------------------ 364
             A  VF  M  +++V+WN +I+   Q GQ                              
Sbjct: 279 NFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSC 338

Query: 365 ----------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                 +D  + +++VDMYAKC  ID A  VF ++  +DV  + 
Sbjct: 339 ANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYT 398

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL 462
            ++   A  G+ G+A  LF +M   GI P+ +++  V+      G + E +  F  M ++
Sbjct: 399 AMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTI 458

Query: 463 -GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
             ++P L  +  ++  L +    NEA  F + M    I+P    +   L AC
Sbjct: 459 YNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNM---PIEPDAFVLGALLGAC 507



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 176/371 (47%), Gaps = 5/371 (1%)

Query: 37  DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMY 96
           D S +    S+   I    K    RE V L  EM   N Q        +L  C    D+ 
Sbjct: 184 DTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLR 243

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
            G+++H  I++N +    + +V   LV  Y KC   + A ++F  + VKNV SW ++I  
Sbjct: 244 LGRKLHRYIIRNSNV-NLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISG 302

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
             + G  +++L  F +MQ  GV PD+  L  VL +C  LG +  G+ VH Y+ +      
Sbjct: 303 LAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRAD 362

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            F+ ++L+DMY KCG +++A  VF  M  ++V ++ +MIVG   +G   +A+ +F EM  
Sbjct: 363 GFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPK 422

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLE 335
            G+EP  V+   +L+A +++  ++EG++    ++ I  +         +++   + GL+ 
Sbjct: 423 MGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLIN 482

Query: 336 DAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
           +AE     M +E D      L+ +    G+  V +  S++    K E   +   V  S I
Sbjct: 483 EAEEFIRNMPIEPDAFVLGALLGACKIHGK--VELGESVMKKIEKIEPRKDGAYVLMSNI 540

Query: 395 LRDVVLWNTLL 405
                 W   L
Sbjct: 541 YSSANRWRDAL 551


>gi|302787038|ref|XP_002975289.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
 gi|300156863|gb|EFJ23490.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
          Length = 730

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 214/734 (29%), Positives = 347/734 (47%), Gaps = 123/734 (16%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           ++IH+ + + G        +   LV  Y KC  L  A   F  +  KNVFSW+ IIGL  
Sbjct: 1   RRIHSELARTG--IDSETLLGNTLVQMYGKCGNLAEARAAFDGIAEKNVFSWSIIIGLYS 58

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           R  LS +A+  F  M    V P+     N L AC +  ++  G+ +H  ++    +  + 
Sbjct: 59  RHRLSREAIELFHAMD---VRPNCVTFINTLGACSSAEFLETGKKIHAQIVAGEVELELN 115

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           +A+SLI MY  CG L +A++ FDGM  RNVV+WN +I  +  +G   EA+ +FYEM  +G
Sbjct: 116 LANSLISMYSNCGSLVDAKRFFDGMNRRNVVSWNCIIAAFSGHGHYREAVDLFYEMEKQG 175

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
            +P RVS  S+ SA + L+ L +G++ HA      M+LD  +G++++N Y++ G L+DA 
Sbjct: 176 FKPDRVSFVSVFSACSILEDLSQGRRIHARFCDGRMKLDVSIGNTLLNMYARCGSLDDAR 235

Query: 339 VVFSRMVERDIVTWNLLIASYVQ------------------------------------- 361
           +VF  +  R+IV+W  +IA+Y Q                                     
Sbjct: 236 LVFDSITSRNIVSWTSMIAAYAQFDRFHDAYEVFQKMGVAPNEVTFITILGACAEARALK 295

Query: 362 -----------SG---QSDVVVASSIVDMYAKCERIDNAKQVFNSIIL--RDVVLWNTLL 405
                      SG   +  + V + +++ YAKC  + +AK VF S+    R+VV W +++
Sbjct: 296 QAREIHSLVLTSGILEKQQLTVGNGLINTYAKCGSLSDAKTVFESMATAERNVVTWTSII 355

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LG------------------ 442
           AA    G   EA  LF++M+LEGI  N I++ +V+     LG                  
Sbjct: 356 AACGLCGHPREALALFHRMELEGIPANEITFGTVLSACADLGSTREARYLHGLIVSGGYD 415

Query: 443 ------------FLRNGQMNEAKDMFLQMQS---------LGV----------------- 464
                       F + G + +A+ +F +M+S         LG                  
Sbjct: 416 RDTVVCNGLINMFGKCGMLEDARAIFERMRSRNLVTWTGMLGAYIQQQEIRQAVSLFQQM 475

Query: 465 ----QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
                 +++ WTT+++   Q    +EA+  +  M   G+ P   T    L AC+ + + +
Sbjct: 476 ERISYKDVMAWTTMVAAYAQAGYADEALKLYARMGLEGVAPDEITFVNLLHACSRMGAKK 535

Query: 521 NGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYA 580
            G  I  +++   L     +   LV  Y  CG   QAK VF+    ++   +NA I    
Sbjct: 536 EGWTIRSHILERGLPSSRVLGNGLVCFYGACGTWLQAKMVFENLAERDSAAWNAAIGVSG 595

Query: 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
            HG   E+L LF+ +  +G++PD ITFTN+L +CSH+G +      F+ M  DH ++P++
Sbjct: 596 QHGFYDESLRLFERMVLEGMEPDEITFTNVLFSCSHSGEIERAWRWFLVMRGDHGMEPNV 655

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700
           EH+GC+ +L  R G +DEA R++  +P    +    +LLS C    +   AE  +E  + 
Sbjct: 656 EHWGCLADLFGRLGWIDEAERLVSFLPRTRASIAWTTLLSGCKVHGDVSTAERAAERAMA 715

Query: 701 LEPDNPGNYVALSN 714
           ++P     YV LS+
Sbjct: 716 VDPSKSSPYVLLSH 729


>gi|356501914|ref|XP_003519768.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02750-like [Glycine max]
          Length = 627

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 193/596 (32%), Positives = 313/596 (52%), Gaps = 35/596 (5%)

Query: 182 NFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG-KCGDLEEARKVF 240
           +F  P + KAC  L      + +H ++LK GF    + +S+L   Y        +A K F
Sbjct: 37  SFTFPTLFKACTNLRSPSHTQTLHAHLLKTGFHSDPYASSALTAAYAANPRHFLDALKAF 96

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
           D M   NV + N+ + G+ +NG   EA+RVF    L  + P  V++  +L         +
Sbjct: 97  DEMPQPNVASLNAALSGFSRNGRRGEALRVFRRAGLGPLRPNSVTIACMLGVPRV--GAN 154

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
             +  H  AV  G+E D  + +S++  Y K G +  A  VF  +  + +V++N  ++  +
Sbjct: 155 HVEMMHCCAVKLGVEFDAYVATSLVTAYCKCGEVVSASKVFEELPVKSVVSYNAFVSGLL 214

Query: 361 QSGQSDVVV------------------ASSIVDMYAKC---ERIDNAKQVFNSIILRD-- 397
           Q+G   +V+                  + ++V + + C   + I   +QV   ++  +  
Sbjct: 215 QNGVPRLVLDVFKEMMRGEECVECKLNSVTLVSVLSACGSLQSIRFGRQVHGVVVKLEAG 274

Query: 398 --VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
             V++   L+  Y+  G    A  +F    +EG   N+I+WNS+I G + N +   A DM
Sbjct: 275 DGVMVMTALVDMYSKCGFWRSAFEVF--TGVEGNRRNLITWNSMIAGMMLNKESERAVDM 332

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQ-NSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514
           F +++S G++P+  TW ++ISG  Q   CG EA  +F +M   G+ P    +T  LSAC 
Sbjct: 333 FQRLESEGLKPDSATWNSMISGFAQLGECG-EAFKYFGQMQSVGVAPCLKIVTSLLSACA 391

Query: 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK--ELPVY 572
           D + L++G+ IHG  +R D+     +VT+LVDMY KCG    A+ VFD   +K  +   +
Sbjct: 392 DSSMLQHGKEIHGLSLRTDINRDDFLVTALVDMYMKCGLASWARGVFDQYDAKPDDPAFW 451

Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
           NAMI GY  +G    A  +F  + ++ + P+S TF ++L+ACSH G V+ GL  F  M  
Sbjct: 452 NAMIGGYGRNGDYESAFEIFDEMLEEMVRPNSATFVSVLSACSHTGQVDRGLHFFRMMRI 511

Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
           ++ ++P  EHFGC+V+LL R G L EA  ++  +  +P A +  SLL  C    ++ L E
Sbjct: 512 EYGLQPKPEHFGCIVDLLGRSGRLSEAQDLMEEL-AEPPASVFASLLGACRCYLDSNLGE 570

Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
            +++ LL +EP+NP   V LSN YA  GRW EV ++R ++ +KGL K  G S I++
Sbjct: 571 EMAKKLLDVEPENPAPLVVLSNIYAGLGRWKEVERIRGVITDKGLDKLSGFSMIEL 626



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 148/566 (26%), Positives = 255/566 (45%), Gaps = 84/566 (14%)

Query: 51  ISSLSKEKQIREAVDLLTEM-KCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           ++ L  +   REA+ L + +  C +  +    +  L + C   R     Q +HA +LK G
Sbjct: 8   LAKLVSDGFYREALSLFSHLHSCSSHTLHSFTFPTLFKACTNLRSPSHTQTLHAHLLKTG 67

Query: 110 DFFARNEYVETKLVVFYAK-----CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSE 164
             F  + Y  + L   YA       DAL    + F  +   NV S  A +    R G   
Sbjct: 68  --FHSDPYASSALTAAYAANPRHFLDAL----KAFDEMPQPNVASLNAALSGFSRNGRRG 121

Query: 165 KALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG----RAVHGYVLKVGFDGCVFVA 220
           +AL  F   +  G+ P   + PN +     LG    G      +H   +K+G +   +VA
Sbjct: 122 EALRVF---RRAGLGP---LRPNSVTIACMLGVPRVGANHVEMMHCCAVKLGVEFDAYVA 175

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL--EG 278
           +SL+  Y KCG++  A KVF+ +  ++VV++N+ + G +QNG+    + VF EM    E 
Sbjct: 176 TSLVTAYCKCGEVVSASKVFEELPVKSVVSYNAFVSGLLQNGVPRLVLDVFKEMMRGEEC 235

Query: 279 VEPTRVSVT--SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           VE    SVT  S+LSA  +L ++  G+Q H V V        ++ +++++ YSK G    
Sbjct: 236 VECKLNSVTLVSVLSACGSLQSIRFGRQVHGVVVKLEAGDGVMVMTALVDMYSKCGFWRS 295

Query: 337 AEVVFSRMV--ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
           A  VF+ +    R+++TWN +IA  + + +S+       VDM+ + E         +  +
Sbjct: 296 AFEVFTGVEGNRRNLITWNSMIAGMMLNKESE-----RAVDMFQRLE---------SEGL 341

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISP---------------NIISWNSV 439
             D   WN++++ +A LG  GEA + F QMQ  G++P               +++     
Sbjct: 342 KPDSATWNSMISGFAQLGECGEAFKYFGQMQSVGVAPCLKIVTSLLSACADSSMLQHGKE 401

Query: 440 ILG--------------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
           I G                    +++ G  + A+ +F Q  +    P    W  +I G  
Sbjct: 402 IHGLSLRTDINRDDFLVTALVDMYMKCGLASWARGVFDQYDAKPDDPAF--WNAMIGGYG 459

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY-LIRHDLCL-P 537
           +N     A   F EMLE  ++P++ T    LSAC+    +   R +H + ++R +  L P
Sbjct: 460 RNGDYESAFEIFDEMLEEMVRPNSATFVSVLSACSHTGQV--DRGLHFFRMMRIEYGLQP 517

Query: 538 TP-IVTSLVDMYAKCGNIHQAKRVFD 562
            P     +VD+  + G + +A+ + +
Sbjct: 518 KPEHFGCIVDLLGRSGRLSEAQDLME 543



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 138/531 (25%), Positives = 226/531 (42%), Gaps = 104/531 (19%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           + +H   +K G  F  + YV T LV  Y KC  +  AS++F  L VK+V S+ A +    
Sbjct: 157 EMMHCCAVKLGVEF--DAYVATSLVTAYCKCGEVVSASKVFEELPVKSVVSYNAFVSGLL 214

Query: 159 RVGLSEKALIGFVEMQ--EDGVSP--DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFD 214
           + G+    L  F EM   E+ V    ++  L +VL ACG+L  + FGR VHG V+K+   
Sbjct: 215 QNGVPRLVLDVFKEMMRGEECVECKLNSVTLVSVLSACGSLQSIRFGRQVHGVVVKLEAG 274

Query: 215 GCVFVASSLIDMYGKCGDLEEARKVFDGMIA--RNVVAWNSMIVGYVQNGLNEEAIRVFY 272
             V V ++L+DMY KCG    A +VF G+    RN++ WNSMI G + N  +E A+ +F 
Sbjct: 275 DGVMVMTALVDMYSKCGFWRSAFEVFTGVEGNRRNLITWNSMIAGMMLNKESERAVDMFQ 334

Query: 273 EMTLEGVEPTRVS-----------------------------------VTSILSASANLD 297
            +  EG++P   +                                   VTS+LSA A+  
Sbjct: 335 RLESEGLKPDSATWNSMISGFAQLGECGEAFKYFGQMQSVGVAPCLKIVTSLLSACADSS 394

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER--DIVTWNLL 355
            L  GK+ H +++   +  D+ L +++++ Y K GL   A  VF +   +  D   WN +
Sbjct: 395 MLQHGKEIHGLSLRTDINRDDFLVTALVDMYMKCGLASWARGVFDQYDAKPDDPAFWNAM 454

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
           I  Y ++G  +                                                 
Sbjct: 455 IGGYGRNGDYE------------------------------------------------- 465

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITWTTL 474
            A  +F +M  E + PN  ++ SV+      GQ++     F  M+   G+QP    +  +
Sbjct: 466 SAFEIFDEMLEEMVRPNSATFVSVLSACSHTGQVDRGLHFFRMMRIEYGLQPKPEHFGCI 525

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           +  L ++   +EA    Q+++E   +P  +     L AC        G  +   L+  + 
Sbjct: 526 VDLLGRSGRLSEA----QDLMEELAEPPASVFASLLGACRCYLDSNLGEEMAKKLLDVEP 581

Query: 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
             P P+V  L ++YA  G   + +R+  +   K L      +SG++M  LA
Sbjct: 582 ENPAPLVV-LSNIYAGLGRWKEVERIRGVITDKGLD----KLSGFSMIELA 627


>gi|297819724|ref|XP_002877745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323583|gb|EFH54004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 764

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 190/687 (27%), Positives = 360/687 (52%), Gaps = 24/687 (3%)

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFA-RNEYVETKLVVFYAKCDALDVASRLFCRL 142
           EL + CV    +    Q+HA IL  G   A  + Y    L+  Y +C +L+ A +LF ++
Sbjct: 12  ELTRKCVSITALKRACQLHAIILTAGAGSASESPYKNNNLISMYVRCGSLEQARKLFDKM 71

Query: 143 RVKNVFSWAAIIGLNCR-VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
             +NV S+ A+     R +  +  A     +M  + + P++    ++++ C  L  V  G
Sbjct: 72  PERNVVSYNALYSAYSRNLDYASYAFSLINQMASESLKPNSSTFTSLVQVCTVLEDVLMG 131

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
             +H  ++K+G+   V V +S++ MY  CGDLE AR++F+ +   + VAWN+MIVG  +N
Sbjct: 132 SLLHSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFECVNGGDAVAWNTMIVGIFRN 191

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL--DEGKQAHAVAVINGMELDNV 319
              E+ + +F  M + GV+PT+ + + +L+A + L +     GK  HA  +++ +  D  
Sbjct: 192 DKIEDGLMLFRSMLMSGVDPTQFTYSMVLNACSKLGSYRYSVGKLIHARMIVSDILADLP 251

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           + +++++ Y   G +++A  VF ++   ++V+WN +I     SG S+       + MY +
Sbjct: 252 VENALLDMYCSCGDMKEAFYVFGKIHNPNLVSWNSII-----SGCSENGFGEQAILMYRR 306

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
             RI   +         D   ++  + A A+  +      L  Q+   G   ++    ++
Sbjct: 307 LLRISTPRP--------DEYTFSAAIPATAEPEKFIHGKLLHGQVTKLGYERSVFVGTTL 358

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           +  + +NG+   A+ +F     +  + +++ WT +I G ++      A+  F EM     
Sbjct: 359 LSMYFKNGEAESAQKVF----GVITERDVVLWTEMIVGESRVGNSECAVQLFIEMYREKN 414

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           +    +++  L AC+D+A LR G+  H   I+        +  +LVDMY K G    A+ 
Sbjct: 415 RTDGFSLSSVLGACSDMAMLRQGQVFHSLAIKTGFDNVMSVSGALVDMYGKNGKYETAES 474

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           +F +  + +L  +N+M+  Y+ HG+  +A + F+ + + G  PD++T+ ++L ACSH G 
Sbjct: 475 IFSLVSNPDLKCWNSMLGAYSQHGMVEKAQSFFEQILENGFTPDAVTYLSLLAACSHKGS 534

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSL 678
             EG  L+  M  +  +    +H+ C+V+L+S+ G L EAL +I   P + + A +  +L
Sbjct: 535 TQEGKFLWNQM-KEQGITAGFKHYSCMVSLVSKAGLLGEALELIKQSPPENNQAELWRTL 593

Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           LS CV +   ++  Y ++ +L+L+P++   ++ LSN YA +GRW +V+++R  ++     
Sbjct: 594 LSACVNARNLQIGLYAADQILKLDPEDTATHILLSNLYAVNGRWKDVAEMRRKIRGLASA 653

Query: 739 KNPGCSWIQI-GEELHVFVACDRSHPK 764
           K+PG SWI++     HVF + D+S+P+
Sbjct: 654 KDPGLSWIEVNNNNTHVFSSGDQSNPE 680



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/498 (25%), Positives = 229/498 (45%), Gaps = 38/498 (7%)

Query: 39  SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
           SY +LY +Y   +   S       A  L+ +M   + +     +  L+Q C    D+  G
Sbjct: 78  SYNALYSAYSRNLDYASY------AFSLINQMASESLKPNSSTFTSLVQVCTVLEDVLMG 131

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
             +H++I+K G  ++ N  V+T ++  Y+ C  L+ A R+F  +   +  +W  +I    
Sbjct: 132 SLLHSQIIKLG--YSDNVVVQTSVLGMYSSCGDLESARRIFECVNGGDAVAWNTMIVGIF 189

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF--GRAVHGYVLKVGFDGC 216
           R    E  L+ F  M   GV P  F    VL AC  LG   +  G+ +H  ++       
Sbjct: 190 RNDKIEDGLMLFRSMLMSGVDPTQFTYSMVLNACSKLGSYRYSVGKLIHARMIVSDILAD 249

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE-MT 275
           + V ++L+DMY  CGD++EA  VF  +   N+V+WNS+I G  +NG  E+AI ++   + 
Sbjct: 250 LPVENALLDMYCSCGDMKEAFYVFGKIHNPNLVSWNSIISGCSENGFGEQAILMYRRLLR 309

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335
           +    P   + ++ + A+A  +    GK  H      G E    +G+++++ Y K G  E
Sbjct: 310 ISTPRPDEYTFSAAIPATAEPEKFIHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNGEAE 369

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERID----------- 384
            A+ VF  + ERD+V W  +I    + G S+  V    ++MY +  R D           
Sbjct: 370 SAQKVFGVITERDVVLWTEMIVGESRVGNSECAV-QLFIEMYREKNRTDGFSLSSVLGAC 428

Query: 385 ------NAKQVFNSIILRD-----VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
                    QVF+S+ ++      + +   L+  Y   G+   A  +F  +     +P++
Sbjct: 429 SDMAMLRQGQVFHSLAIKTGFDNVMSVSGALVDMYGKNGKYETAESIFSLVS----NPDL 484

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
             WNS++  + ++G + +A+  F Q+   G  P+ +T+ +L++  +      E    + +
Sbjct: 485 KCWNSMLGAYSQHGMVEKAQSFFEQILENGFTPDAVTYLSLLAACSHKGSTQEGKFLWNQ 544

Query: 494 MLETGIKPSTTTITCALS 511
           M E GI       +C +S
Sbjct: 545 MKEQGITAGFKHYSCMVS 562


>gi|302816264|ref|XP_002989811.1| hypothetical protein SELMODRAFT_130525 [Selaginella moellendorffii]
 gi|300142377|gb|EFJ09078.1| hypothetical protein SELMODRAFT_130525 [Selaginella moellendorffii]
          Length = 756

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 224/765 (29%), Positives = 366/765 (47%), Gaps = 142/765 (18%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L  CV    +  G++IH   ++ G    +N +VE  L+  Y KC AL+ A ++   +  
Sbjct: 1   MLDWCVRLGALEAGKRIHRHSVECG--MGKNRFVENLLINMYGKCGALEEARKILDGMED 58

Query: 145 KNVFSWAAIIGLNCRVGL----------------------------SEKALIG----FVE 172
            NVFSW  ++    + GL                            +E+ + G    F +
Sbjct: 59  SNVFSWTIMLAAYAQNGLDSAKRVFDLSHAKRDVVSWNSMLSTCSQNEQGIQGTWELFQQ 118

Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
           M  +G  PD      +L  C +   +  GR VH   +  G D    VA+ +++MYGKC D
Sbjct: 119 MDLEGFQPDRVTFVTLLDCCASFADLRRGRQVHQCAVASGMDLLPTVANCVVNMYGKCDD 178

Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
           LEEAR+VF+ +  +N ++W+S++  Y QN    EA+++F  M LEG++P RV++ S+L A
Sbjct: 179 LEEARRVFESLKRKNEISWSSLVAAYAQNNQATEAMKLFQHMDLEGLKPDRVTLISVLDA 238

Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE--RDIV 350
             +L A  +  Q HA  +   +E D V+ +++++ Y K+G LE A V+F  M E  RD++
Sbjct: 239 CGDLRASKQSSQIHARVLEADLERDVVVANALVSMYGKLGRLEQATVIFETMGEKSRDVI 298

Query: 351 TWNLLIASYVQSG----------------------------------------------- 363
            WN +I++Y  +G                                               
Sbjct: 299 AWNAMISAYAHTGHHTRAFGIFRIMLLEAAVTPSAATISAILAACLDLGSGRRIHCLAAS 358

Query: 364 ---QSDVVVASSIVDMYAKCER-IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASR 419
              +S   VA S++ MY++C   I +A+ +F  +  + +V WNT++AA A  G + EA  
Sbjct: 359 IGVESHPSVAISLLGMYSRCSSSITSARALFLGMERKSLVAWNTMIAACAQRGLAAEAQE 418

Query: 420 LFYQMQLE------------------------GIS-----PNIISWNSVILGFLRNGQMN 450
           LF  M +E                        GI+       +I   +++  + R G + 
Sbjct: 419 LFKAMDVEPDGFTFASLLAVCCDLDLGRRLHAGIATARLASRLIVDTALVGMYSRCGSLG 478

Query: 451 EAKDMFLQMQ------SLG---------VQPNLITWTTLISGLTQNSCGNEAILFFQEML 495
           +A  +F  M+      SLG            + ++W ++IS    +    +AI  ++ M 
Sbjct: 479 DAAAVFEGMEDRDTCGSLGDAKLVFDRIPDKDAVSWNSMISAYAHHGRYKDAIATYRAM- 537

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS-LVDMYAKCGNI 554
               +P   TI  AL+A + +A L  G AIH   +  +L + TP V S L  M+AKCG++
Sbjct: 538 --DCRPDEATIVSALAAASALADLDEGAAIHARAL--ELGIATPAVESTLASMHAKCGSL 593

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A  +F+ +  K+L  +NAM++ YA HG   EALAL   ++ +GI P+ +T + +L +C
Sbjct: 594 DAAMALFEKNREKDLVSWNAMVAAYAQHGDGSEALALIHRMELEGISPNGVTLSGVLASC 653

Query: 615 SHAGLVNEGLELFVGMFS-DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           SHAGL+  G+  +VG  S +H V    EH+  VV LL RCG L EA  V+  MP +P+  
Sbjct: 654 SHAGLLERGM-FYVGWLSREHGVAVESEHYRFVVELLGRCGRLGEAEAVVRGMPLEPEPA 712

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           +  +L++ CV   E   A+  +     L+P +  +YV L+N Y+A
Sbjct: 713 LWVTLVAACVLHEEVSRADRAAA---GLDPGDAASYVLLANVYSA 754


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 168/566 (29%), Positives = 314/566 (55%), Gaps = 32/566 (5%)

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G+L  A ++F+ +    +  +N +I  + +NG   +A+ +F ++  EG+ P   +   + 
Sbjct: 80  GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350
            A   L  + EG++ +   V +G+E D  + +S+++ Y++VG +++   VF  M +RD+V
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199

Query: 351 TWNLLIASYVQSGQSDVVV---------------ASSIVDMYAKC---ERIDNAKQVFNS 392
           +WN+LI+ YV+  + +  V                +++V   + C   + ++  K++   
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRY 259

Query: 393 IILR---DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           +  +    + + N L+  Y   G    A  +F  M ++     +I W S++ G++  GQ+
Sbjct: 260 VREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIK----TVICWTSMVSGYVNCGQL 315

Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
           +EA+++F +        +++ WT +I+G  Q +  ++A+  F+EM    + P   T+   
Sbjct: 316 DEARELFERSPV----RDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVAL 371

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           L+ C  + +L  G+ IHGY+  + + +   + T+L++MYAKCG I ++  +F+    K+ 
Sbjct: 372 LTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDT 431

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             + ++I G AM+G   +AL LF  + Q G+ PD ITF  +L+ACSH GLV EG + F  
Sbjct: 432 ASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRS 491

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII---GSLLSTCVKSN 686
           M + +Q++P +EH+GC+++LL R G LDEA  +I   P   +  I+   G+LLS C    
Sbjct: 492 MTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHG 551

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
             E+ E +++ L+ +E  +   +  L+N YA++ RW +V++VR  MK+ G++K PGCS +
Sbjct: 552 NVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSV 611

Query: 747 QIGEELHVFVACDRSHPKTEEIYATL 772
           ++   +H F+  D SHP+  EIY+ L
Sbjct: 612 EVNGIVHEFLVGDASHPEMREIYSML 637



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 147/536 (27%), Positives = 261/536 (48%), Gaps = 59/536 (11%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+ C   + M   +QI  +IL+ G   + +   +  +         L  A R+F  + +
Sbjct: 38  LLKNC---KSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDI 94

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
             +F +  +I    + G   KA++ F +++E+G+SPDNF  P V KA G LG V  G  V
Sbjct: 95  PGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKV 154

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           +G+V+K G +   +V +SL+DMY + G ++  R+VF+ M  R+VV+WN +I GYV+    
Sbjct: 155 YGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRY 214

Query: 265 EEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSS 323
           E+A+ VF  M  +  + P   +V S LSA   L  L+ GK+ H   V   +     +G++
Sbjct: 215 EDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRY-VREQLGFTIKIGNA 273

Query: 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI 383
           +++ Y K G L  A  +F+ M  + ++ W  +++ YV  GQ                  +
Sbjct: 274 LVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQ------------------L 315

Query: 384 DNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
           D A+++F    +RDVVLW  ++  Y    R  +A  LF +MQ++ +SP+  +  +++ G 
Sbjct: 316 DEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGC 375

Query: 444 LRNGQMNEAK----------------------DMFLQM----QSLGV-----QPNLITWT 472
            + G + + K                      +M+ +     +SL +     + +  +WT
Sbjct: 376 AQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWT 435

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA-IHGYLIR 531
           ++I GL  N   ++A+  F EM++TG+KP   T    LSAC+    +  GR         
Sbjct: 436 SIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAV 495

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE----LPVYNAMISGYAMHG 583
           + +         L+D+  + G + +A+ + + SP+      +P+Y A++S    HG
Sbjct: 496 YQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHG 551


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 219/736 (29%), Positives = 352/736 (47%), Gaps = 105/736 (14%)

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR--VKNVFSW 150
           RD  + + IHA  L+ G     +  V   L+  YA+C  L  A  +F  +     +  S+
Sbjct: 71  RDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSF 130

Query: 151 AAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC----GALGWVGFGRAVHG 206
            ++I   C     + AL     M   G    +F L +VL+A      A   V  GR  H 
Sbjct: 131 NSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHA 190

Query: 207 YVLKVGF--DGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR--NVVAWNSMIVGYVQNG 262
           + LK G       F  ++L+ MY + G + +A+++F G      +VV WN+M+   VQ+G
Sbjct: 191 FALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSG 250

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
           + +EA++  Y+M   GV P  V+  S L A + L+ LD G++ HA               
Sbjct: 251 MFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAY-------------- 296

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
                     +++D E+                         ++  VAS++VDMYA  E+
Sbjct: 297 ----------VIKDDELA------------------------ANSFVASALVDMYATHEQ 322

Query: 383 IDNAKQVFNSI--ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE------------- 427
           +  A+QVF+ +    + + +WN ++  YA  G   EA RLF +M+ E             
Sbjct: 323 VGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASV 382

Query: 428 -----------------------GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
                                  G++ N    N+++  + R G+ + A+ +F  +     
Sbjct: 383 LPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVD---- 438

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEML---ETGIKPSTTTITCALSACTDVASLRN 521
            P++++W TLI+G        +A    +EM    E G+ P+  T+   L  C  +A+   
Sbjct: 439 LPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPAR 498

Query: 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581
           G+ IHGY +RH L     + ++LVDMYAKCG +  ++ VFD  P +    +N +I  Y M
Sbjct: 499 GKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGM 558

Query: 582 HGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM 640
           HGL  EA  LF  +   G   P+ +TF   L ACSH+G+V+ GL+LF  M  DH V+P+ 
Sbjct: 559 HGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTP 618

Query: 641 EHFGCVVNLLSRCGNLDEALRVILTMPC-DPDAHIIGSLLSTCVKSNETELAEYISEHLL 699
           +   CVV++L R G LDEA  ++ +M   +       ++L  C       L E   E LL
Sbjct: 619 DILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLL 678

Query: 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACD 759
           +LEP+   +YV L N Y+A+G+W   ++VR  M+ +G+ K PGCSWI++   +H F+A +
Sbjct: 679 ELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGE 738

Query: 760 RSHPKTEEIYATLALL 775
            +HP +EE++A +  L
Sbjct: 739 SAHPASEEVHAHMEAL 754



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 134/438 (30%), Positives = 218/438 (49%), Gaps = 35/438 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S L +     EAV  L +M     +     +   L  C     +  G+++HA ++K+ D
Sbjct: 243 VSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKD-D 301

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVFSWAAIIGLNCRVGLSEKALI 168
             A N +V + LV  YA  + +  A ++F  +    K +  W A+I    + G+ E+AL 
Sbjct: 302 ELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALR 361

Query: 169 GFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMY 227
            F  M+ E G  P    + +VL AC          AVHGYV+K G  G  FV ++L+DMY
Sbjct: 362 LFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMY 421

Query: 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM-TLE--GVEPTRV 284
            + G  + AR++F  +   +VV+WN++I G V  G   +A ++  EM  LE  GV P  +
Sbjct: 422 ARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAI 481

Query: 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
           ++ ++L   A L A   GK+ H  AV + ++ D  +GS++++ Y+K G L  +  VF R+
Sbjct: 482 TLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRL 541

Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVD-MYAKCERIDNAKQVFNSIILRDVVLWNT 403
             R+ +TWN+LI +Y   G      A+ + D M A  E   N                 T
Sbjct: 542 PRRNTITWNVLIMAYGMHGLGG--EATVLFDRMTASGEARPNEV---------------T 584

Query: 404 LLAAYADLGRSGEASR---LFYQMQLE-GI--SPNIISWNSVILGFLRNGQMNEAKDMFL 457
            +AA A    SG   R   LF+ M+ + G+  +P+I++    ILG  R G+++EA  M  
Sbjct: 585 FMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILG--RAGRLDEAYAMVT 642

Query: 458 QMQSLGVQPNLITWTTLI 475
            M++ G Q  +  W+T++
Sbjct: 643 SMET-GEQ-QVSAWSTML 658


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 192/683 (28%), Positives = 334/683 (48%), Gaps = 99/683 (14%)

Query: 192 CGALGWVGFGRAVHGYVLKVG-----FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
           C  L  +  GR VH ++L              +++ LI MYG+CG  + AR VFDGM+ R
Sbjct: 52  CSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDSARVVFDGMLDR 111

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           N V+W ++I  + QN    +A+ +F  M   G  P + ++ S + A + L  L  G+Q H
Sbjct: 112 NPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVH 171

Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS- 365
           A A+      D ++ ++++  YSK G + D   +F R+ ++D+++W  +IA   Q G+  
Sbjct: 172 AQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGREM 231

Query: 366 -----------------------------DVVVAS------------------------S 372
                                         VVV S                        S
Sbjct: 232 DALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCS 291

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           + DMYA+C  +D+A++VF  I   D+V WN+L+ A++  G   EA  LF +M+  G+ P+
Sbjct: 292 LSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPD 351

Query: 433 -----------------------------------IISWNSVILGFLRNGQMNEAKDMFL 457
                                              +I  NS++  + R    + A D+F 
Sbjct: 352 GITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFH 411

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
           +        +++TW ++++   Q+    +    F  +  +       ++   LSA  ++ 
Sbjct: 412 ETH----DRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELG 467

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI-SPSKELPVYNAMI 576
                + +H Y  +  L     +   L+D YAKCG++  A ++F+I    +++  ++++I
Sbjct: 468 YFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLI 527

Query: 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636
            GYA  G A EAL LF  ++  G+ P+ +TF  +L ACS  GLV+EG   +  M  ++ +
Sbjct: 528 VGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACSRVGLVDEGCYYYSIMKPEYGI 587

Query: 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696
            P+ EH  CV++LL+R G L EA + +  MP +PD  +  +LL+     N+ ++ +  +E
Sbjct: 588 VPTREHCSCVLDLLARAGRLSEAAKFVDQMPFEPDIIMWKTLLAASRTHNDVDMGKRAAE 647

Query: 697 HLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756
            +L ++P +   YV L N YA+SG WNE ++++  M+  G++K+PG SWI++  EL VF+
Sbjct: 648 GVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDMRSSGVQKSPGKSWIKLKGELKVFI 707

Query: 757 ACDRSHPKTEEIYATLALLGMHV 779
             DRSHP+++EIY  L ++G+ +
Sbjct: 708 VEDRSHPESDEIYTMLEVIGLEM 730


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 179/545 (32%), Positives = 301/545 (55%), Gaps = 29/545 (5%)

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           N   WN++I  +       EA  +F  M   GV   + S + +L A + L  + EG Q H
Sbjct: 86  NPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIH 145

Query: 307 AVAVINGMEL--DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG- 363
            +  +  ME+  D  L + ++  Y + G L  A  +F RM++RD V++N +I  YV+ G 
Sbjct: 146 GL--LGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGM 203

Query: 364 --------------QSDVVVASSIVDMYAKCER-IDNAKQVFNSIILRDVVLWNTLLAAY 408
                         Q +++  +S++  YA+ E  +  A ++F  +  RD++ WN+++   
Sbjct: 204 VKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGC 263

Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
              G+   A  LF QM       +++SW +++ G+ + G+++ A+ +F +M     + ++
Sbjct: 264 VKCGKMENAHHLFNQMP----KRDVVSWANMVDGYAKLGEIDIARGLFDEMP----ERDV 315

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
           I+   +++G  QN    EA+ FF +ML    + P   T+   LSA   +     G A+H 
Sbjct: 316 ISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHC 375

Query: 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587
           Y+  +   L   +  +L+DMYAKCG+I  A  VF+    K +  +NA+I G A+HGL   
Sbjct: 376 YIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEV 435

Query: 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVV 647
           A  LF  +++  + PD ITF  +LNAC+HAGLV EGL  F  M   H+V+P ++H+GC+V
Sbjct: 436 AFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMV 495

Query: 648 NLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707
           ++L R G+++EA + +  MP +P+  +  +LLS C       + E +++HL+ ++  NP 
Sbjct: 496 DILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPS 555

Query: 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEE 767
           +YV LSN YA  G WN+V ++R +MK++ L+K PGCS I++   +H F   D+SHP+  E
Sbjct: 556 SYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQVRE 615

Query: 768 IYATL 772
           IY+ L
Sbjct: 616 IYSML 620



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 133/516 (25%), Positives = 230/516 (44%), Gaps = 68/516 (13%)

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVA--------SRLFCRLRV 144
           + ++   QIH+R++  G  F  N  + T++++ ++      +         SR F R   
Sbjct: 25  KTLHDVNQIHSRLITTG--FINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHR 82

Query: 145 K--NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGR 202
           K  N F W AII          +A + F  M E+GV  D F    VLKAC  LG +  G 
Sbjct: 83  KQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGM 142

Query: 203 AVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNG 262
            +HG + ++     VF+ + L+ +Y +CG L  AR++FD M+ R+ V++NSMI GYV++G
Sbjct: 143 QIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHG 202

Query: 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
           + + A  +F  M +E  +   +S  S++S  A     +EG +          + D +  +
Sbjct: 203 MVKSARELFDVMPME--QKNLISWNSMISGYAR---SEEGLRVAWELFEEMPKRDLISWN 257

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
           S+I+   K G +E+A  +F++M +RD+V+W                  +++VD YAK   
Sbjct: 258 SMIDGCVKCGKMENAHHLFNQMPKRDVVSW------------------ANMVDGYAKLGE 299

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVIL 441
           ID A+ +F+ +  RDV+  N ++A Y   G   EA   F+ M   + + P+  +    + 
Sbjct: 300 IDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLS 359

Query: 442 GFLRNGQMNEA--------KDMFLQMQSLGV-----------------------QPNLIT 470
              + G  +E          + F   + LGV                         ++  
Sbjct: 360 AIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDH 419

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           W  +I GL  +  G  A   F EM +  +KP   T    L+AC     ++ G      + 
Sbjct: 420 WNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMR 479

Query: 531 R-HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           R H +         +VD+  + G++ +AK+  +  P
Sbjct: 480 RVHKVEPKLQHYGCMVDILGRAGHVEEAKKFVEKMP 515



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 142/305 (46%), Gaps = 13/305 (4%)

Query: 57  EKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNE 116
           E+ +R A +L  EM  R+       +  ++ GCV    M     +  ++ K      R+ 
Sbjct: 235 EEGLRVAWELFEEMPKRDLIS----WNSMIDGCVKCGKMENAHHLFNQMPK------RDV 284

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QE 175
                +V  YAK   +D+A  LF  +  ++V S  A++    + G   +AL  F +M   
Sbjct: 285 VSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSR 344

Query: 176 DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
             + PDN  L   L A   LG    G A+H Y+   GF     +  +LIDMY KCG ++ 
Sbjct: 345 KELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDN 404

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A  VF+ +  +++  WN++I G   +GL E A  +F EM    V+P  ++   +L+A  +
Sbjct: 405 ALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNH 464

Query: 296 LDALDEGKQAHAVA-VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWN 353
              + EG     +   ++ +E        +++   + G +E+A+    +M +E + V W 
Sbjct: 465 AGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWR 524

Query: 354 LLIAS 358
            L+++
Sbjct: 525 TLLSA 529



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 10/205 (4%)

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
           Q N   W  +I   +      EA + F  MLE G+     + +  L AC+ +  ++ G  
Sbjct: 84  QDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQ 143

Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGL 584
           IHG L R ++     +   L+ +Y +CG +  A+++FD    ++   +N+MI GY  HG+
Sbjct: 144 IHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGM 203

Query: 585 AVEALALFK--NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642
              A  LF    ++QK +    I++ ++++  + +    EGL +   +F +   K  +  
Sbjct: 204 VKSARELFDVMPMEQKNL----ISWNSMISGYARS---EEGLRVAWELFEE-MPKRDLIS 255

Query: 643 FGCVVNLLSRCGNLDEALRVILTMP 667
           +  +++   +CG ++ A  +   MP
Sbjct: 256 WNSMIDGCVKCGKMENAHHLFNQMP 280


>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 206/632 (32%), Positives = 339/632 (53%), Gaps = 57/632 (9%)

Query: 132 LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
           L  A  LF  ++ ++  +W ++I          +A   F EM    V   N ++     +
Sbjct: 55  LSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVVSWNLIVSGYF-S 113

Query: 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAW 251
           C    +V  GR +  + L    D CV   +++I  Y K G +++A K+F+ M  RN V+ 
Sbjct: 114 CRGSRFVEEGRRL--FELMPQRD-CV-SWNTVISGYAKNGRMDQALKLFNAMPERNAVSS 169

Query: 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI 311
           N++I G++ NG  + A+  F  M     E    S+++++S       LD    A  +   
Sbjct: 170 NALITGFLLNGDVDSAVDFFRTMP----EHYSTSLSALISGLVRNGELD---MAAGILCE 222

Query: 312 NGMELDNVLGS--SIINFYSKVGLLEDAEVVFS-------------RMVERDIVTWNLLI 356
            G   D+++ +  ++I  Y + G +E+A  +F              R   R++V+WN ++
Sbjct: 223 CGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMM 282

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
             YV++G  D+V                +A+++F+ ++ +D   WNT+++ Y  +    E
Sbjct: 283 MCYVKAG--DIV----------------SARELFDRMVEQDTCSWNTMISGYVQISNMEE 324

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
           AS+LF +M +    P+++SWN ++ GF + G +N AKD F +M       NLI+W ++I+
Sbjct: 325 ASKLFREMPI----PDVLSWNLIVSGFAQKGDLNLAKDFFERMP----LKNLISWNSIIA 376

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL 536
           G  +N     AI  F  M   G +P   T++  +S CT + +L  G+ IH  + +  + +
Sbjct: 377 GYEKNEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTK--IVI 434

Query: 537 P-TPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGLAVEALALFKN 594
           P +PI  SL+ MY++CG I  A  VF +I   K++  +NAMI GYA HGLA EAL LFK 
Sbjct: 435 PDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALELFKL 494

Query: 595 LQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654
           +++  I P  ITF +++NAC+HAGLV EG   F  M +D+ ++  +EHF  +V++L R G
Sbjct: 495 MKRLKIHPTYITFISVMNACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDILGRQG 554

Query: 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714
            L EA+ +I TMP  PD  + G+LLS C   N  ELA   ++ L++LEP++   YV L N
Sbjct: 555 QLQEAMDLINTMPFKPDKAVWGALLSACRVHNNVELALVAADALIRLEPESSAPYVLLYN 614

Query: 715 AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
            YA  G+W++   VR +M+EK ++K  G SW+
Sbjct: 615 IYANLGQWDDAESVRVLMEEKNVKKQAGYSWV 646



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 145/608 (23%), Positives = 243/608 (39%), Gaps = 121/608 (19%)

Query: 50  QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
           +IS+L +  ++ EA  L   MK R+       +  ++ G V++R++   +Q+        
Sbjct: 45  KISNLIRSGRLSEARALFDSMKHRD----TVTWNSMITGYVHRREIARARQLF------- 93

Query: 110 DFFARNEYVETKLVVF-YAKCDA---LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
           D   R + V   L+V  Y  C     ++   RLF  +  ++  SW  +I    + G  ++
Sbjct: 94  DEMPRRDVVSWNLIVSGYFSCRGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQ 153

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA------------VHGYVLK--- 210
           AL  F  M E      N ++   L        V F R             + G V     
Sbjct: 154 ALKLFNAMPERNAVSSNALITGFLLNGDVDSAVDFFRTMPEHYSTSLSALISGLVRNGEL 213

Query: 211 -----------VGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM-------------IAR 246
                       G D  V   ++LI  YG+ G +EEAR++FDG+               R
Sbjct: 214 DMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRR 273

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
           NVV+WNSM++ YV+ G    A  +F  M    VE    S  +++S    +  ++E     
Sbjct: 274 NVVSWNSMMMCYVKAGDIVSARELFDRM----VEQDTCSWNTMISGYVQISNMEE----- 324

Query: 307 AVAVINGMELDNVLGSS-IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ- 364
           A  +   M + +VL  + I++ +++ G L  A+  F RM  +++++WN +IA Y ++   
Sbjct: 325 ASKLFREMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDY 384

Query: 365 ---------------------------------------------SDVVVASS-----IV 374
                                                        + +V+  S     ++
Sbjct: 385 KGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDSPINNSLI 444

Query: 375 DMYAKCERIDNAKQVFNSIIL-RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
            MY++C  I +A  VFN I L +DV+ WN ++  YA  G + EA  LF  M+   I P  
Sbjct: 445 TMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIHPTY 504

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
           I++ SV+      G + E +  F  M    G++  +  + +L+  L +     EA+    
Sbjct: 505 ITFISVMNACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLIN 564

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
            M     KP        LSAC    ++         LIR +     P V  L ++YA  G
Sbjct: 565 TM---PFKPDKAVWGALLSACRVHNNVELALVAADALIRLEPESSAPYVL-LYNIYANLG 620

Query: 553 NIHQAKRV 560
               A+ V
Sbjct: 621 QWDDAESV 628



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 21/236 (8%)

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           N  I   +R+G+++EA+ +F  M+      + +TW ++I+G         A   F EM  
Sbjct: 43  NKKISNLIRSGRLSEARALFDSMK----HRDTVTWNSMITGYVHRREIARARQLFDEMPR 98

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
             +  S   I     +C     +  GR +   + + D C+    V S    YAK G + Q
Sbjct: 99  RDV-VSWNLIVSGYFSCRGSRFVEEGRRLFELMPQRD-CVSWNTVIS---GYAKNGRMDQ 153

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A ++F+  P +     NA+I+G+ ++G    A+  F+ + +         ++  L+A   
Sbjct: 154 ALKLFNAMPERNAVSSNALITGFLLNGDVDSAVDFFRTMPEH--------YSTSLSALI- 204

Query: 617 AGLVNEG-LELFVGMFSD--HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669
           +GLV  G L++  G+  +  +     +  +  ++    + G+++EA R+   +P D
Sbjct: 205 SGLVRNGELDMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDD 260



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 20/145 (13%)

Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTN 609
           + G + +A+ +FD    ++   +N+MI+GY        A  LF  + ++    D +++  
Sbjct: 51  RSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRR----DVVSWNL 106

Query: 610 ILN---ACSHAGLVNEGLELFVGMFSDHQVKPSME--HFGCVVNLLSRCGNLDEALRVIL 664
           I++   +C  +  V EG  LF       ++ P  +   +  V++  ++ G +D+AL++  
Sbjct: 107 IVSGYFSCRGSRFVEEGRRLF-------ELMPQRDCVSWNTVISGYAKNGRMDQALKLFN 159

Query: 665 TMP----CDPDAHIIGSLLSTCVKS 685
            MP       +A I G LL+  V S
Sbjct: 160 AMPERNAVSSNALITGFLLNGDVDS 184


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 189/604 (31%), Positives = 303/604 (50%), Gaps = 85/604 (14%)

Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYG--KCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
           + +H  +L+       F AS ++        G L  AR VF+ +        NS+I GY 
Sbjct: 57  KQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYT 116

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
              L  +AI  +  M L+G++P R +  S+  +      L EGKQ H  +          
Sbjct: 117 NKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCG---VLCEGKQLHCHS---------- 163

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
                    +K+G   DA                     Y+Q+         ++++MY+ 
Sbjct: 164 ---------TKLGFASDA---------------------YIQN---------TLMNMYSN 184

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
           C  + +A++VF+ ++ + VV W T++ AYA      EA +LF +M++  + PN I+  +V
Sbjct: 185 CGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNV 244

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGV-------------------------------QPNL 468
           +    R+  +  AK +   +   G+                               + NL
Sbjct: 245 LTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNL 304

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
             W  +I+G  ++S   EA+  F EM  +G+K    T+   L ACT + +L  G+ +H Y
Sbjct: 305 FCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVY 364

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
           + +  + +   + T+LVDMYAKCG+I  A RVF   P K++  + A+I G AM G  ++A
Sbjct: 365 IEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKA 424

Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
           L LF  +Q   + PD+ITF  +L ACSHAGLVNEG+  F  M + + ++PS+EH+GC+V+
Sbjct: 425 LELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVD 484

Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
           +L R G + EA  +I  MP  PD  ++  LLS C       +AE  ++ L++L+P N G 
Sbjct: 485 MLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGT 544

Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           YV LSN Y++   W    ++R++M E+ ++K PGCS I++G  +H FV  D SHP++ EI
Sbjct: 545 YVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEI 604

Query: 769 YATL 772
           Y TL
Sbjct: 605 YETL 608



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 229/487 (47%), Gaps = 73/487 (14%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDA--LDVASRLFCRLRVKNVFSWAAIIGL 156
           +QIHA++L+   F   + +  +K+V F A  D+  L  A  +F ++     F+  +II  
Sbjct: 57  KQIHAQMLRTCLFV--DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRG 114

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
                L  +A++ +  M   G+ PD F  P++ K+CG L     G+ +H +  K+GF   
Sbjct: 115 YTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASD 171

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
            ++ ++L++MY  CG L  ARKVFD M+ ++VV+W +MI  Y Q  L  EAI++F  M +
Sbjct: 172 AYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEI 231

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
             V+P  +++ ++L+A A    L+  KQ H      G+    VL S++++ Y K G    
Sbjct: 232 ASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPL 291

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG--------------------------------- 363
           A  +F++M E+++  WN++I  +V+                                   
Sbjct: 292 ARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTH 351

Query: 364 -------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
                              + DV + +++VDMYAKC  I++A +VF  +  +DV+ W  L
Sbjct: 352 LGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTAL 411

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLG 463
           +   A  G+  +A  LF++MQ+  + P+ I++  V+      G +NE    F  M    G
Sbjct: 412 IVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYG 471

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
           +QP++  +  ++  L +     EA    Q M    + P    +   LSAC          
Sbjct: 472 IQPSIEHYGCMVDMLGRAGRIAEAEDLIQNM---PMAPDYFVLVGLLSACR--------- 519

Query: 524 AIHGYLI 530
            IHG L+
Sbjct: 520 -IHGNLV 525



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 195/381 (51%), Gaps = 20/381 (5%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G+Q+H    K G  FA + Y++  L+  Y+ C  L  A ++F ++  K+V SWA +IG  
Sbjct: 156 GKQLHCHSTKLG--FASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAY 213

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            +  L  +A+  F  M+   V P+   L NVL AC     +   + VH Y+ + G     
Sbjct: 214 AQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHT 273

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            + S+L+D+Y KCG    AR +F+ M  +N+  WN MI G+V++   EEA+ +F EM L 
Sbjct: 274 VLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 333

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           GV+  +V++ S+L A  +L AL+ GK  H       +E+D  LG+++++ Y+K G +E A
Sbjct: 334 GVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESA 393

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
             VF  M E+D++TW  LI      GQ                + ++   ++  S +  D
Sbjct: 394 MRVFQEMPEKDVMTWTALIVGLAMCGQG--------------LKALELFHEMQMSEVKPD 439

Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMF 456
            + +  +LAA +  G   E    F  M  + GI P+I  +  ++    R G++ EA+D+ 
Sbjct: 440 AITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDL- 498

Query: 457 LQMQSLGVQPNLITWTTLISG 477
             +Q++ + P+      L+S 
Sbjct: 499 --IQNMPMAPDYFVLVGLLSA 517



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 149/297 (50%), Gaps = 11/297 (3%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
            EA+ L   M+  + +        +L  C   RD+ T +Q+H  I + G  F  +  + +
Sbjct: 220 HEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGF--HTVLTS 277

Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
            L+  Y KC    +A  LF ++  KN+F W  +I  +      E+AL  F EMQ  GV  
Sbjct: 278 ALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKG 337

Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           D   + ++L AC  LG +  G+ +H Y+ K   +  V + ++L+DMY KCG +E A +VF
Sbjct: 338 DKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVF 397

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
             M  ++V+ W ++IVG    G   +A+ +F+EM +  V+P  ++   +L+A ++   ++
Sbjct: 398 QEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVN 457

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
           EG     +A  N M     +  SI ++   V +L  A     R+ E + +  N+ +A
Sbjct: 458 EG-----IAYFNSMPNKYGIQPSIEHYGCMVDMLGRA----GRIAEAEDLIQNMPMA 505



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 7/191 (3%)

Query: 56  KEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARN 115
           ++    EA+ L  EM+    +        LL  C +   +  G+ +H  I K  +    +
Sbjct: 316 EDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEK--EKIEVD 373

Query: 116 EYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA-IIGLN-CRVGLSEKALIGFVEM 173
             + T LV  YAKC +++ A R+F  +  K+V +W A I+GL  C  GL  KAL  F EM
Sbjct: 374 VALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGL--KALELFHEM 431

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL-KVGFDGCVFVASSLIDMYGKCGD 232
           Q   V PD      VL AC   G V  G A    +  K G    +     ++DM G+ G 
Sbjct: 432 QMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGR 491

Query: 233 LEEARKVFDGM 243
           + EA  +   M
Sbjct: 492 IAEAEDLIQNM 502


>gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera]
          Length = 674

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 183/581 (31%), Positives = 310/581 (53%), Gaps = 63/581 (10%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
           +++I  Y K  +L +A K+F  M  R +VA ++MI GY + GL + A +VF  M    ++
Sbjct: 104 TAMITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVFDAM----ID 159

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEV 339
               S TS++S         +G+ A A  + + M   NV+  ++++  Y++ GL++ A  
Sbjct: 160 TNVFSWTSLISGY-----FRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARS 214

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
           VF++M E++ ++W  ++ SYV +G                  R D A ++F+ +  R++ 
Sbjct: 215 VFNQMPEKNTISWTAMMKSYVDNG------------------RTDEALKLFHEMPQRNLY 256

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
            WNT+++   D  R  EA +LF+ M L     N +SW  ++ G  RNG    A++ F QM
Sbjct: 257 SWNTMISGCLDGKRVNEAFKLFHLMPLR----NAVSWTIMVSGLARNGFTKLAREYFDQM 312

Query: 460 QS---------------------------LGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
            +                           L  + N++TW  +I G  ++    EA+    
Sbjct: 313 PNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMKHLI 372

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
            ML + I+P+ TT+T  L++C  +  L      H   I       T +  +L+ MY++ G
Sbjct: 373 LMLRSCIRPNETTMTIILTSCWGMLELMQA---HALAIVVGCECETSLSNALITMYSRIG 429

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           +I  ++  F+   +K++  + AM+  +  HG    AL +F ++ + G  PD ITF  +L+
Sbjct: 430 DISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLS 489

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP-CDPD 671
           ACSHAGLV +G +LF  M   + ++P  EH+ C+V++L R G + EA+ V+  MP C+ D
Sbjct: 490 ACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEAMDVVWKMPECERD 549

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
             ++G+LL  C      E+A+YI + L++L+P++ G YV L+N +AA G W+E ++VR  
Sbjct: 550 GAVLGALLGACRLHGNVEMADYIGQKLIELQPNSSGGYVLLANVFAARGNWDEFAEVRKK 609

Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           MK++ +RK PG S I++  + H F A D+SHP+ EEIY  L
Sbjct: 610 MKDRNVRKVPGFSQIEVKGKCHAFFAGDKSHPQVEEIYELL 650



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/508 (23%), Positives = 214/508 (42%), Gaps = 110/508 (21%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           R    E+ ++  YAK   +D A ++F  +   NVFSW ++I    R G   KA   F +M
Sbjct: 129 RTIVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQM 188

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233
               V                + W                       ++++  Y + G +
Sbjct: 189 PAKNV----------------VSW-----------------------TTMVLGYARNGLI 209

Query: 234 EEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR--VSVTSILS 291
           ++AR VF+ M  +N ++W +M+  YV NG  +EA+++F+EM      P R   S  +++S
Sbjct: 210 DQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEM------PQRNLYSWNTMIS 263

Query: 292 ASANLDALDEGKQAHAVAVINGMELDNVLGSSI-INFYSKVGLLEDAEVVFSRMVERDIV 350
                  LD  +   A  + + M L N +  +I ++  ++ G  + A   F +M  +DI 
Sbjct: 264 G-----CLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMPNKDIA 318

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
            WN +I +YV                  +C  ++ A ++FN +  R++V WN ++  YA 
Sbjct: 319 AWNAMITAYVD-----------------ECLIVE-ASELFNLMTERNIVTWNAMIDGYAR 360

Query: 411 LGRSGEASRLFYQMQLEGISPNIIS--------W------------------------NS 438
               GEA +    M    I PN  +        W                        N+
Sbjct: 361 HRPDGEAMKHLILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSNA 420

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           +I  + R G ++ ++  F  +++     ++++WT ++   T +  G+ A+  F  ML++G
Sbjct: 421 LITMYSRIGDISSSRIAFESLKA----KDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSG 476

Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIR-HDLCLPTPIVTSLVDMYAKCGNIHQA 557
            KP   T    LSAC+    ++ G+ +   + R + L       + LVD+  + G +H+A
Sbjct: 477 TKPDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEA 536

Query: 558 KRVFDISP--SKELPVYNAMISGYAMHG 583
             V    P   ++  V  A++    +HG
Sbjct: 537 MDVVWKMPECERDGAVLGALLGACRLHG 564



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 171/375 (45%), Gaps = 49/375 (13%)

Query: 113 ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
           A+N    T +V+ YA+   +D A  +F ++  KN  SW A++      G +++AL  F E
Sbjct: 190 AKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHE 249

Query: 173 MQEDGVSPDN---------------FVLPNVLKACGALGWV----GFGRAVHGYVLKVGF 213
           M +  +   N               F L +++    A+ W     G  R     + +  F
Sbjct: 250 MPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYF 309

Query: 214 DGC----VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR 269
           D      +   +++I  Y     + EA ++F+ M  RN+V WN+MI GY ++  + EA++
Sbjct: 310 DQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMK 369

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329
               M    + P   ++T IL++   +  L    QAHA+A++ G E +  L +++I  YS
Sbjct: 370 HLILMLRSCIRPNETTMTIILTSCWGMLEL---MQAHALAIVVGCECETSLSNALITMYS 426

Query: 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQV 389
           ++G +  + + F  +  +D+V+W  ++ ++   G                    D+A  V
Sbjct: 427 RIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHG------------------DHALHV 468

Query: 390 FNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVILGFL 444
           F  ++      D + +  +L+A +  G   +  +LF  M +  G+ P    ++ ++    
Sbjct: 469 FGHMLKSGTKPDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILG 528

Query: 445 RNGQMNEAKDMFLQM 459
           R GQ++EA D+  +M
Sbjct: 529 RAGQVHEAMDVVWKM 543



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 160/372 (43%), Gaps = 77/372 (20%)

Query: 358 SYVQSGQSDVVVASSIVDMY---------AKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           S   SG+S++   S+++D+Y          +C  +  A+++F+ +   D V +  ++ AY
Sbjct: 53  SSSNSGKSNL--RSTVLDIYNCNIKISQLGRCGNVRGARKLFDEMPHHDNVSYTAMITAY 110

Query: 409 ADLGRSGEASRLFYQM----------QLEG-----------------ISPNIISWNSVIL 441
                  +A +LF  M           ++G                 I  N+ SW S+I 
Sbjct: 111 LKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLIS 170

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
           G+ R+GQ+ +A  +F QM +     N+++WTT++ G  +N   ++A   F +M E     
Sbjct: 171 GYFRDGQVAKACQLFDQMPA----KNVVSWTTMVLGYARNGLIDQARSVFNQMPEK---- 222

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC---GNIHQAK 558
           +T + T  + +  D     NGR      + H+  +P   + S   M + C     +++A 
Sbjct: 223 NTISWTAMMKSYVD-----NGRTDEALKLFHE--MPQRNLYSWNTMISGCLDGKRVNEAF 275

Query: 559 RVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618
           ++F + P +    +  M+SG A +G    A   F  +  K I   +   T  ++ C    
Sbjct: 276 KLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAYVDEC---- 331

Query: 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678
           L+ E  ELF  M   + V      +  +++  +R     EA++ ++ M            
Sbjct: 332 LIVEASELFNLMTERNIVT-----WNAMIDGYARHRPDGEAMKHLILM------------ 374

Query: 679 LSTCVKSNETEL 690
           L +C++ NET +
Sbjct: 375 LRSCIRPNETTM 386


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 184/591 (31%), Positives = 309/591 (52%), Gaps = 56/591 (9%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L D+         AR +FD +         ++I    +   ++E +  F  +   G +  
Sbjct: 25  LHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVP 84

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
              V  ++ + A L A  +GKQ H  A++ G+  D  + +++++FY+K G ++ A  VF 
Sbjct: 85  PGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFD 144

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            M  +D +  N LI  Y +SG  DVV                 A+++F+ ++ R    WN
Sbjct: 145 EMPVKDPIPMNCLITGYSKSG--DVV----------------KARRLFDGMVRRTSASWN 186

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIIS------------------WNSVILG-- 442
           +++A YA  G   EA RLF +M  EG  PN I+                  W   ++   
Sbjct: 187 SMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQ 246

Query: 443 --------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
                         +++   ++EA+  F +MQ    Q +++ W+T+I+G  QN   +E++
Sbjct: 247 DLQNMIVHTALMEMYVKCQAIDEARREFDRMQ----QRDVVAWSTMIAGYAQNGRPHESL 302

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
             F+ M  T  KP+  T+   LSAC  + S   G  I  ++   +L L + + ++L+DMY
Sbjct: 303 ELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMY 362

Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
            KCG++ +A+ VF+    K +  +N+M+ G A++G A +A+ L+K + ++ + P+ ITF 
Sbjct: 363 TKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFV 422

Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
            +L AC+HAGLV++G+  F  M + H V P +EH  C+V+LL + G L EA + I  M  
Sbjct: 423 ALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEV 482

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
           +P+A I  +LLS C    + ELA+  +  LL LEPDN   YV LSN YA +G W +V ++
Sbjct: 483 EPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREI 542

Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           RD+M+ K ++K    SWI++  E+H F+  D  HPK+ EI+  +  +G+H+
Sbjct: 543 RDLMRSKNVQKLSAYSWIELDGEVHKFLVQDTYHPKSAEIFNVVDGMGLHL 593



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 222/493 (45%), Gaps = 54/493 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+LS+    +E +D  + +  R   + P     +++ C        G+Q+H   +  G 
Sbjct: 57  ISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRG- 115

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVF---------------------- 148
               + +V+T LV FYAK   +D A ++F  + VK+                        
Sbjct: 116 -LLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLF 174

Query: 149 ---------SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
                    SW ++I      G  ++AL  F  M  +G  P+   +  +   C   G + 
Sbjct: 175 DGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLE 234

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            G+     + +      + V ++L++MY KC  ++EAR+ FD M  R+VVAW++MI GY 
Sbjct: 235 TGKWARSLIAEQDLQN-MIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYA 293

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           QNG   E++ +F  M     +P  V++  +LSA A L + + G Q  +      + L + 
Sbjct: 294 QNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSY 353

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           LGS++I+ Y+K G +  A  VF+RM  + ++TWN ++     +G      A   + +Y  
Sbjct: 354 LGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNG-----FAQDAITLY-- 406

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWNS 438
                  K++    +  + + +  LL A    G   +    F +M+ +  +SP +     
Sbjct: 407 -------KEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCAC 459

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           ++    ++G++ EA      M+   V+PN + W+TL+S    ++    A L   ++L   
Sbjct: 460 IVDLLCKSGRLREAYKFICDME---VEPNAVIWSTLLSACRAHADVELAKLAASKLLV-- 514

Query: 499 IKPSTTTITCALS 511
           ++P  ++I   LS
Sbjct: 515 LEPDNSSIYVLLS 527



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 124/504 (24%), Positives = 230/504 (45%), Gaps = 59/504 (11%)

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           R+   ++ L  F  +   G       +P V+K+C  L     G+ VH + +  G  G +F
Sbjct: 62  RLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIF 121

Query: 219 VASSLIDMYGKCGDLE-------------------------------EARKVFDGMIARN 247
           V ++L+D Y K GD++                               +AR++FDGM+ R 
Sbjct: 122 VQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRT 181

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
             +WNSMI  Y   G  +EA+R+F  M  EG  P  +++ ++ S  A    L+ GK A  
Sbjct: 182 SASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWAR- 240

Query: 308 VAVINGMELDN-VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
            ++I   +L N ++ ++++  Y K   +++A   F RM +RD+V W+ +IA Y Q+G+  
Sbjct: 241 -SLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRP- 298

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                  ++++   ER+       N + L  V      L+A A LG      ++   ++ 
Sbjct: 299 ----HESLELF---ERMKATSCKPNEVTLVGV------LSACAQLGSDELGGQIGSHVES 345

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
           + +       +++I  + + G +  A+ +F +M+   V    ITW +++ GL  N    +
Sbjct: 346 QNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVV----ITWNSMMRGLALNGFAQD 401

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-HDLCLPTPIVTSLV 545
           AI  ++EM E  ++P+  T    L+ACT    +  G +    +   H +         +V
Sbjct: 402 AITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIV 461

Query: 546 DMYAKCGNIHQA-KRVFDISPSKELPVYNAMISGYAMHG-LAVEALALFKNLQQKGIDPD 603
           D+  K G + +A K + D+       +++ ++S    H  + +  LA  K L    ++PD
Sbjct: 462 DLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLV---LEPD 518

Query: 604 SITFTNIL-NACSHAGLVNEGLEL 626
           + +   +L N  + AGL  +  E+
Sbjct: 519 NSSIYVLLSNIYADAGLWGDVREI 542



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 181/400 (45%), Gaps = 17/400 (4%)

Query: 33  LRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYK 92
           +R +  S+ S+   Y H         + +EA+ L   M     +        +   C   
Sbjct: 178 VRRTSASWNSMIACYAHG-------GEYQEALRLFRRMLSEGARPNAITIATMFSICAKT 230

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA 152
            D+ TG+   + I +      +N  V T L+  Y KC A+D A R F R++ ++V +W+ 
Sbjct: 231 GDLETGKWARSLIAEQD---LQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWST 287

Query: 153 IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212
           +I    + G   ++L  F  M+     P+   L  VL AC  LG    G  +  +V    
Sbjct: 288 MIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQN 347

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
                ++ S+LIDMY KCG +  AR VF+ M  + V+ WNSM+ G   NG  ++AI ++ 
Sbjct: 348 LPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYK 407

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQ-AHAVAVINGMELDNVLGSSIINFYSKV 331
           EMT E V+P  ++  ++L+A  +   +D+G      +  I+ +       + I++   K 
Sbjct: 408 EMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKS 467

Query: 332 GLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVF 390
           G L +A      M VE + V W+ L+++      +DV +A          E  +++  V 
Sbjct: 468 GRLREAYKFICDMEVEPNAVIWSTLLSAC--RAHADVELAKLAASKLLVLEPDNSSIYVL 525

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRL--FYQMQLEG 428
            S I  D  LW   +    DL RS    +L  +  ++L+G
Sbjct: 526 LSNIYADAGLWGD-VREIRDLMRSKNVQKLSAYSWIELDG 564


>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
 gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
          Length = 590

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 182/532 (34%), Positives = 279/532 (52%), Gaps = 31/532 (5%)

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
           AR+   WN+ I  +   G    A+  F  M   GV P   +  ++L A         G  
Sbjct: 76  ARDPFPWNTAIRLHAP-GRPRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPGCRAGLL 134

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM--VERDIVTWNLLIASYVQS 362
            HA AV  G+  D    +++I+FY ++        VF     V RD+V+WN ++A YV  
Sbjct: 135 VHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRDLVSWNSMVAGYVGC 194

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG--EASRL 420
           G+  +                  A+++F+ +  RD   W  L+  Y   G +G   A  L
Sbjct: 195 GEMGL------------------AQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRAREL 236

Query: 421 FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480
           F QM       +++ WNS+I G+ R+G+M+EA+ +F +M     + N+I+W+ +I G  +
Sbjct: 237 FDQMT----ERDLVCWNSMIDGYARHGRMDEARSLFEEMP----ERNVISWSIVIDGHVR 288

Query: 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540
                EA+  FQ ML  GI+P       A+SAC  + +L  GR +H YL +  +     +
Sbjct: 289 CGEAKEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVV 348

Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
            T+L+DMY KCG +  A  +F+  P + +  +N MI G   HG  ++A+ LF  ++ + +
Sbjct: 349 QTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERV 408

Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
             D ++   +L AC+HAGLV+EGLE+F  M  D  + P +EH+G +V+LL R G LD+A 
Sbjct: 409 AVDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQAR 468

Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
             I TMP +P   + GSLL+ C   +  ELAE   E L  L  D+ G YV LSN YA  G
Sbjct: 469 HAIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLANLGADDSGVYVLLSNIYADEG 528

Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
            W +V ++R +M ++G+RK+ G S I++  E+H FV    SH  T+EIY  L
Sbjct: 529 MWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIHEFVNGGGSHLCTDEIYLML 580



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 215/479 (44%), Gaps = 81/479 (16%)

Query: 100 QIHARILKNGDFFARNEYVETKLVVFYAKCD-ALDVASRLFCRL---RVKNVFSWAAIIG 155
           Q HA +L +G   A    +   L++  A    A  +A  +F RL     ++ F W   I 
Sbjct: 28  QCHALLLTSGHLAASPLRLSNLLLLAIASVPGAAPLADAVFARLPEPAARDPFPWNTAIR 87

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
           L+   G    AL+ F  M+  GV PD +  P VLKACG       G  VH   ++ G   
Sbjct: 88  LHA-PGRPRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPGCRAGLLVHAEAVRRGLGA 146

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFD--GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
            +F  ++LI  Y +  D    RKVFD  G ++R++V+WNSM+ GYV  G    A  +F E
Sbjct: 147 DLFTVNALISFYCRILDCISGRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQELFDE 206

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQA-----HAVAVINGM-ELDNVLGSSIINF 327
           M      P R       S  A +D    GKQ       A  + + M E D V  +S+I+ 
Sbjct: 207 M------PQR----DAFSWGALIDGY--GKQGGAGVDRARELFDQMTERDLVCWNSMIDG 254

Query: 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ----------------------- 364
           Y++ G +++A  +F  M ER++++W+++I  +V+ G+                       
Sbjct: 255 YARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRVAA 314

Query: 365 -----------------------------SDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395
                                        SDVVV ++++DMY KC R+D A  +F S+  
Sbjct: 315 VGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPE 374

Query: 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
           R VV WN ++      G   +A  LF++M+ E ++ + +S  +++      G ++E  ++
Sbjct: 375 RSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEI 434

Query: 456 FLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           F +M+   G+ P +  +  L+  L +    ++A    + M    ++P+       L+AC
Sbjct: 435 FHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETM---PMEPTPELWGSLLAAC 490



 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 212/459 (46%), Gaps = 46/459 (10%)

Query: 61  REAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARILKNG---DFFARN 115
           R    LL   + R+  + P+ Y    +L+ C        G  +HA  ++ G   D F  N
Sbjct: 93  RPRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPGCRAGLLVHAEAVRRGLGADLFTVN 152

Query: 116 EYVETKLVVFYAKCDALDVAS--RLFCRLR--VKNVFSWAAIIG--LNC-RVGLSEKALI 168
                 L+ FY  C  LD  S  ++F       +++ SW +++   + C  +GL+++   
Sbjct: 153 -----ALISFY--CRILDCISGRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQEL-- 203

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
            F EM +     D F    ++   G  G  G  RA   +      D  +   +S+ID Y 
Sbjct: 204 -FDEMPQR----DAFSWGALIDGYGKQGGAGVDRARELFDQMTERD--LVCWNSMIDGYA 256

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
           + G ++EAR +F+ M  RNV++W+ +I G+V+ G  +EA+  F  M   G+ P RV+   
Sbjct: 257 RHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRVAAVG 316

Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
            +SA A L AL++G+  H+      +  D V+ +++I+ Y K G ++ A ++F  M ER 
Sbjct: 317 AVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERS 376

Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
           +VTWN++I      G          +D      R++  +   + + L        +L A 
Sbjct: 377 VVTWNVMIVGLGTHGYG--------LDAVMLFHRMEAERVAVDDLSLL------AMLTAC 422

Query: 409 ADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
              G   E   +F++M+ + GI P +  + +++    R G++++A+     ++++ ++P 
Sbjct: 423 THAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARH---AIETMPMEPT 479

Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506
              W +L++    +SC   A L  + +   G   S   +
Sbjct: 480 PELWGSLLAACRSHSCVELAELSVERLANLGADDSGVYV 518



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 171/378 (45%), Gaps = 38/378 (10%)

Query: 72  CRNFQIGPEIYGELLQGCVYKRDMYT--------GQQIHARILKNGDFFARNEYVETKLV 123
           C    +  E++ E+ Q     RD ++        G+Q  A + +  + F  ++  E  LV
Sbjct: 194 CGEMGLAQELFDEMPQ-----RDAFSWGALIDGYGKQGGAGVDRARELF--DQMTERDLV 246

Query: 124 VF------YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177
            +      YA+   +D A  LF  +  +NV SW+ +I  + R G +++AL  F  M   G
Sbjct: 247 CWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCG 306

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           + PD       + AC  LG +  GR +H Y+ K      V V ++LIDMY KCG ++ A 
Sbjct: 307 IRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAM 366

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
            +F+ M  R+VV WN MIVG   +G   +A+ +F+ M  E V    +S+ ++L+A  +  
Sbjct: 367 LIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAG 426

Query: 298 ALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLL 355
            + EG +  H +    G++       ++++   + G L+ A      M +E     W  L
Sbjct: 427 LVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSL 486

Query: 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
           +A+      S V +A   V+  A     D+   V  S I             YAD G  G
Sbjct: 487 LAAC--RSHSCVELAELSVERLANLGADDSGVYVLLSNI-------------YADEGMWG 531

Query: 416 EASRLFYQMQLEGISPNI 433
           +  R+   M  EG+  +I
Sbjct: 532 DVLRIRKLMSDEGMRKDI 549


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 205/691 (29%), Positives = 339/691 (49%), Gaps = 71/691 (10%)

Query: 97  TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
           +GQ   AR L +     RN      ++   A+   +D A  LF  +  +N  SW A+I  
Sbjct: 31  SGQLAAARRLFDA-MPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMI-- 87

Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
                LS+   +       D +   +     V+ +C A G  G        + ++  D C
Sbjct: 88  ---AALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARG--GDLELARDVLDRMPGDKC 142

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
               +++I  Y K G  ++A K+   M A ++V+WNS + G  Q+G    A++ F EM  
Sbjct: 143 TACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMVK 202

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLE 335
           +      +    + +   N           A +    +E  NV+   +++N Y + G + 
Sbjct: 203 DMTSWNLMLAGFVRTGDLNA----------ASSFFAKIESPNVISWVTLLNGYCRAGRIA 252

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQ--------------------------SGQSD--- 366
           DA  +F RM ER++V WN+++  YV                           SG +    
Sbjct: 253 DARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGLARAGK 312

Query: 367 ---------------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL 411
                          V   ++++  Y +    D+A+++F+ + + D V WNT+++ Y   
Sbjct: 313 LQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQC 372

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
           G   EA  LF +M     + +++SWN++I G+ ++GQM++A  +F +M     + N ++W
Sbjct: 373 GILEEAMLLFQRMP----NKDMVSWNTMIAGYAQDGQMHKAIGIFRRMN----RRNTVSW 424

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
            ++ISG  QN    +A+  F  M     +   +T    L AC ++A L  GR +H  L+R
Sbjct: 425 NSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVR 484

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
                 +    +L+  YAKCG I +AK++FD    K++  +NA+I GYA +G   EA+A+
Sbjct: 485 SGHINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAV 544

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F+ ++  G+ PD +TF  IL+ACSHAGL++EGL  F  M  ++ +KP  EH+ C+V+LL 
Sbjct: 545 FREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYSMTKEYLLKPVAEHYACMVDLLG 604

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G L+EA  ++  M   P+A + G+LL  C      ELA+  +E L +LEP    NYV 
Sbjct: 605 RAGKLNEAFELVQGMQIQPNAGVWGALLGACHMHKNHELAQLAAERLSELEPRKASNYVL 664

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742
           LSN  A +G+W+E  + R  +KEKG+ K PG
Sbjct: 665 LSNISAEAGKWDESEKARASIKEKGVNKPPG 695



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 137/574 (23%), Positives = 259/574 (45%), Gaps = 87/574 (15%)

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           F ++  +    + G L  AR++FD M  RN V +N+M+    ++G  +EA  +F  M   
Sbjct: 19  FRSNKELTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGM--- 75

Query: 278 GVEPTRVSVTSILSASANLDAL-DEGKQAHAVAVINGMEL-DNVLGSSIINFYSKVGLLE 335
              P R +V    S +A + AL D G+ A A ++ + M + D    + +++ Y++ G LE
Sbjct: 76  ---PGRNTV----SWNAMIAALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLE 128

Query: 336 DAEVVFSRMV-ERDIVTWNLLIASYVQSGQ-------------SDVVVASSIVDMYAKCE 381
            A  V  RM  ++    +N +I+ Y ++G+              D+V  +S +    +  
Sbjct: 129 LARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSG 188

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            +  A Q F+ ++ +D+  WN +LA +   G    AS  F +++    SPN+ISW +++ 
Sbjct: 189 EMVRAVQFFDEMV-KDMTSWNLMLAGFVRTGDLNAASSFFAKIE----SPNVISWVTLLN 243

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM-LETGIK 500
           G+ R G++ +A+D+F +M     + N++ W  ++ G    S   EA   F EM ++  I 
Sbjct: 244 GYCRAGRIADARDLFDRMP----ERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSI- 298

Query: 501 PSTTTITCALSACTDVASLRN-------------GRAIHGYLIR---------------H 532
            S TTI   L+    +   ++                +HGYL R               H
Sbjct: 299 -SWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGMEVH 357

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
           D    T    +++  Y +CG + +A  +F   P+K++  +N MI+GYA  G   +A+ +F
Sbjct: 358 D----TVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIF 413

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
           + + ++    +++++ ++++         + L  F+ M           +  C    L  
Sbjct: 414 RRMNRR----NTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASC----LRA 465

Query: 653 CGNL-----DEALRVILTMPCDPDAHIIG-SLLSTCVKSNETELAEYISEHLLQLEPDNP 706
           C NL        L  +L      +    G +L+ST  K      A+ I + ++     + 
Sbjct: 466 CANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMVY---KDI 522

Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKN 740
            ++ AL + YA++G+  E   V   M+  G+R +
Sbjct: 523 VSWNALIDGYASNGQGTEAIAVFREMEANGVRPD 556


>gi|413941674|gb|AFW74323.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
          Length = 876

 Score =  316 bits (809), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 203/688 (29%), Positives = 348/688 (50%), Gaps = 28/688 (4%)

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
           ETKL+  ++    L  A ++F  +  +++ +W+A+IG     GL E+ +   V M  +GV
Sbjct: 102 ETKLITVHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYEEVVALAVAMVREGV 161

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF--DGC--VFVASSLIDMYGKCGDLE 234
            PD F++  +L+AC     +  G A+H   ++ GF  +G   V V +S++ MY KCG+L 
Sbjct: 162 IPDRFLITRILQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVKCGELG 221

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
            AR  FD M  R++  WNSMI G  ++   EEA R+  +M  +G EP  V+  +++S+ A
Sbjct: 222 RARAAFDMMGQRDLCTWNSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTLVSSYA 281

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
               LD   +       +G+  D V  +S+++ +       +A   F+RM    +    +
Sbjct: 282 RSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAGVEPNGM 341

Query: 355 LIASYVQSGQS---------------------DVVVASSIVDMYAKCERIDNAKQVFNSI 393
            IAS + +  S                     +V+  +S+VDMYAKC  I  AK+VF+ I
Sbjct: 342 TIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAKRVFDEI 401

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
             +D+  WN+++A YA  G  G+A  LF +M+  G+  N+I+WN +I G++RNG    A 
Sbjct: 402 PEKDIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGYIRNGDDERAF 461

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           ++F  M+S GV+ +  +W  LI+G   N   + A+  F +M    ++P   TI   + A 
Sbjct: 462 ELFQMMESCGVKRDTASWNALIAGSVHNGHSDRALRIFWQMQSLLVRPDFITILSIIPAF 521

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            ++A     R IH  +  ++L +   I  +L++ Y+K G++  A  VFD   S+ +  +N
Sbjct: 522 ANLAGFWKVREIHACIYHNNLEMDGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWN 581

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            +I  + +HG   EAL  F  ++Q+G+ PD  T T ++ A    G V+E   +F  M  D
Sbjct: 582 CIILAHLLHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEAKRIFHNMTHD 641

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           + + P ++H+  +V+LL R G+L EA   I  MP  P+  +  +LL+         LA  
Sbjct: 642 YNIIPDLDHYTAIVDLLGRSGSLQEAYEFIGNMPLIPNLAVWEALLTAATIHGNARLANL 701

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            +  L  L+P +P     + N +  +G+  +V  +      + L     CS ++I   ++
Sbjct: 702 TARELSSLDPSDPRIQRLVFNYWGLTGKSVDVPLMTVYNGGRELEDVDSCS-VEIKNNVY 760

Query: 754 VFVACDRSHPKTEEIYATLALLGMHVRL 781
           +F   D  +   E   A L L+ + +R+
Sbjct: 761 LFSTGD--NLALESTVAELKLIMIQIRM 786



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 12/170 (7%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           ++IHA I  N      +  +   L+  Y+K   L  A  +F R   +N+ SW  II  + 
Sbjct: 531 REIHACIYHNN--LEMDGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWNCIILAHL 588

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG-----FGRAVHGYVLKVGF 213
             G   +AL  F EM+++GV PD+  L  V+KA G  G V      F    H Y +    
Sbjct: 589 LHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEAKRIFHNMTHDYNIIPDL 648

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG 262
           D      ++++D+ G+ G L+EA +    M +  N+  W +++     +G
Sbjct: 649 DH----YTAIVDLLGRSGSLQEAYEFIGNMPLIPNLAVWEALLTAATIHG 694


>gi|302798306|ref|XP_002980913.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
 gi|300151452|gb|EFJ18098.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
          Length = 809

 Score =  316 bits (809), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 193/697 (27%), Positives = 335/697 (48%), Gaps = 114/697 (16%)

Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGF-------DGCVFVASSLIDMYGKCGDLEEARKV 239
            +LK CG LG +  G+ +H  + + G         G  F+ + L+ MYGKCG  +EA++ 
Sbjct: 19  RLLKECGRLGDLAHGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEAQRA 78

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           FD +  +N+ +W S++V Y   GL+ +A+  F++M   GVEP R+   + L+    L  L
Sbjct: 79  FDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLAALNVCGILKRL 138

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359
           ++G   H       ++ D  +G+++++ Y K G L+ A+ +F  +  +++++W +L++ +
Sbjct: 139 EDGAGIHRQIQDKLLDSDLEIGNALVSMYGKCGRLDLAKQLFDCLEMKNVISWTILVSVF 198

Query: 360 VQSGQS-----------------------------------------------------D 366
            ++G+                                                      +
Sbjct: 199 AENGRRRETWGLLRSMAVEGIKPDKVLLLTLLNVCSSRGVLDEDSWMAHDYIVGSGLDRE 258

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRD---VVLWNTLLAAYADLGRSGEASRLFYQ 423
            VVA++++ M+A+C R+D A+++F  +       +  WN ++ AYA  G S EA  L   
Sbjct: 259 AVVATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNAMITAYAHRGCSKEALFLLDS 318

Query: 424 MQLEGISPNIISW--------------------------------NSVILGFLRNGQMNE 451
           +QL+G+ PN I++                                N+++  + R G + +
Sbjct: 319 LQLQGVKPNCITFISSLGACSSLQDGRALHLLIDESGFDREVSVANALVTMYGRCGSLLD 378

Query: 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML-ETGIKPSTTTITCAL 510
           +  +F +M     + +L +W + I+    +   +E I    +M  E G++PS+ T+  A+
Sbjct: 379 SAKLFSEM----AEKDLASWNSAIAAHAYHGRSDECIKLLDQMRGEGGLEPSSVTLVTAM 434

Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
           SAC  +A   + + +H       L   T +   LVDMY K G++  A+ +FD +  + + 
Sbjct: 435 SACGGLADPSSSKRVHERARELGLESETCVANGLVDMYGKAGDVDTARYIFDRALRRNVT 494

Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
            +NAM   Y   G+    L L + +Q+ G  PDS+TF ++L+ C H+GL+ E    FV M
Sbjct: 495 TWNAMAGAYRQCGVTRGVLWLVRTMQRDGYRPDSVTFVSLLSVCGHSGLLEEARYNFVAM 554

Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEA----LRVILTMPCDPDAHIIGSLLSTCVKSN 686
             +  + PS +H+ CV++LL+R G L +A     R+ ++ P      +  +LL  C    
Sbjct: 555 RREFGIDPSPKHYSCVIDLLARAGELQQAEDFIARISVSSPASSPMWM--ALLGACRSLG 612

Query: 687 ETELAEYI----SEHLLQLEP----DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
           ++          +  + ++EP    D    +VAL+N  AASG W+E   +R  M EKGLR
Sbjct: 613 DSSSRARRAARNAMDVEKMEPRSQHDPSAAHVALANICAASGNWDEALSIRKAMAEKGLR 672

Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           K PG S I +   LH FVA DR HP+ EEIYA L  L
Sbjct: 673 KEPGRSLIAVKNRLHEFVAGDRDHPRREEIYAELRRL 709



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 134/591 (22%), Positives = 245/591 (41%), Gaps = 140/591 (23%)

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN-------VLGSSIIN 326
           ++  GV+    S   +L     L  L  GK+ HA    +G+ LD+        LG+ ++ 
Sbjct: 5   ISRSGVDDACRSYARLLKECGRLGDLAHGKRLHAQIRESGLLLDDREESGARFLGNCLVQ 64

Query: 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG----------------------- 363
            Y K G  ++A+  F  +  ++I +W  ++ +Y  +G                       
Sbjct: 65  MYGKCGRTDEAQRAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLV 124

Query: 364 -----------------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSII 394
                                         SD+ + +++V MY KC R+D AKQ+F+ + 
Sbjct: 125 FLAALNVCGILKRLEDGAGIHRQIQDKLLDSDLEIGNALVSMYGKCGRLDLAKQLFDCLE 184

Query: 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII------------------SW 436
           +++V+ W  L++ +A+ GR  E   L   M +EGI P+ +                  SW
Sbjct: 185 MKNVISWTILVSVFAENGRRRETWGLLRSMAVEGIKPDKVLLLTLLNVCSSRGVLDEDSW 244

Query: 437 --NSVILG----------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
             +  I+G                F R G++++A+++F ++     Q  +  W  +I+  
Sbjct: 245 MAHDYIVGSGLDREAVVATALLSMFARCGRVDKAREIFEKVADHSAQV-IECWNAMITAY 303

Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
               C  EA+     +   G+KP+  T   +L AC+   SL++GRA+H  +         
Sbjct: 304 AHRGCSKEALFLLDSLQLQGVKPNCITFISSLGACS---SLQDGRALHLLIDESGFDREV 360

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQ-Q 597
            +  +LV MY +CG++  + ++F     K+L  +N+ I+ +A HG + E + L   ++ +
Sbjct: 361 SVANALVTMYGRCGSLLDSAKLFSEMAEKDLASWNSAIAAHAYHGRSDECIKLLDQMRGE 420

Query: 598 KGIDPDSITFTNILNAC------SHAGLVNE-----GLEL-------FVGMFS------- 632
            G++P S+T    ++AC      S +  V+E     GLE         V M+        
Sbjct: 421 GGLEPSSVTLVTAMSACGGLADPSSSKRVHERARELGLESETCVANGLVDMYGKAGDVDT 480

Query: 633 -----DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD---PDAHIIGSLLSTCVK 684
                D  ++ ++  +  +     +CG     L ++ TM  D   PD+    SLLS C  
Sbjct: 481 ARYIFDRALRRNVTTWNAMAGAYRQCGVTRGVLWLVRTMQRDGYRPDSVTFVSLLSVCGH 540

Query: 685 SNETELAEY---ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
           S   E A Y          ++P +P +Y  + +  A +G   E+ Q  D +
Sbjct: 541 SGLLEEARYNFVAMRREFGIDP-SPKHYSCVIDLLARAG---ELQQAEDFI 587


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  316 bits (809), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 184/591 (31%), Positives = 309/591 (52%), Gaps = 56/591 (9%)

Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
           L D+         AR +FD +         ++I    +   ++E +  F  +   G +  
Sbjct: 25  LHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVP 84

Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342
              V  ++ + A L A  +GKQ H  A++ G+  D  + +++++FY+K G ++ A  VF 
Sbjct: 85  PGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFD 144

Query: 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
            M  +D +  N LI  Y +SG  DVV                 A+++F+ ++ R    WN
Sbjct: 145 EMPVKDPIPMNCLITGYSKSG--DVV----------------KARRLFDGMVRRTSASWN 186

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIIS------------------WNSVILG-- 442
           +++A YA  G   EA RLF +M  EG  PN I+                  W   ++   
Sbjct: 187 SMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQ 246

Query: 443 --------------FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
                         +++   ++EA+  F +MQ    Q +++ W+T+I+G  QN   +E++
Sbjct: 247 DLQNMIVHTALMEMYVKCRAIDEARREFDRMQ----QRDVVAWSTMIAGYAQNGRPHESL 302

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
             F+ M  T  KP+  T+   LSAC  + S   G  I  ++   +L L + + ++L+DMY
Sbjct: 303 ELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMY 362

Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
            KCG++ +A+ VF+    K +  +N+M+ G A++G A +A+ L+K + ++ + P+ ITF 
Sbjct: 363 TKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFV 422

Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
            +L AC+HAGLV++G+  F  M + H V P +EH  C+V+LL + G L EA + I  M  
Sbjct: 423 ALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEV 482

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
           +P+A I  +LLS C    + ELA+  +  LL LEPDN   YV LSN YA +G W +V ++
Sbjct: 483 EPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREI 542

Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           RD+M+ K ++K    SWI++  E+H F+  D  HPK+ EI+  +  +G+H+
Sbjct: 543 RDLMRSKNVQKLSAYSWIELDGEVHKFLVQDTYHPKSAEIFNVVDGMGLHL 593



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 222/493 (45%), Gaps = 54/493 (10%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+LS+    +E +D  + +  R   + P     +++ C        G+Q+H   +  G 
Sbjct: 57  ISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRG- 115

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVF---------------------- 148
               + +V+T LV FYAK   +D A ++F  + VK+                        
Sbjct: 116 -LLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLF 174

Query: 149 ---------SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
                    SW ++I      G  ++AL  F  M  +G  P+   +  +   C   G + 
Sbjct: 175 DGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLE 234

Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYV 259
            G+     + +      + V ++L++MY KC  ++EAR+ FD M  R+VVAW++MI GY 
Sbjct: 235 TGKWARSLIAEQDLQN-MIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYA 293

Query: 260 QNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           QNG   E++ +F  M     +P  V++  +LSA A L + + G Q  +      + L + 
Sbjct: 294 QNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSY 353

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           LGS++I+ Y+K G +  A  VF+RM  + ++TWN ++     +G      A   + +Y  
Sbjct: 354 LGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNG-----FAQDAITLY-- 406

Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ-LEGISPNIISWNS 438
                  K++    +  + + +  LL A    G   +    F +M+ +  +SP +     
Sbjct: 407 -------KEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCAC 459

Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
           ++    ++G++ EA      M+   V+PN + W+TL+S    ++    A L   ++L   
Sbjct: 460 IVDLLCKSGRLREAYKFICDME---VEPNAVIWSTLLSACRAHADVELAKLAASKLLV-- 514

Query: 499 IKPSTTTITCALS 511
           ++P  ++I   LS
Sbjct: 515 LEPDNSSIYVLLS 527



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 124/504 (24%), Positives = 230/504 (45%), Gaps = 59/504 (11%)

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           R+   ++ L  F  +   G       +P V+K+C  L     G+ VH + +  G  G +F
Sbjct: 62  RLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIF 121

Query: 219 VASSLIDMYGKCGDLE-------------------------------EARKVFDGMIARN 247
           V ++L+D Y K GD++                               +AR++FDGM+ R 
Sbjct: 122 VQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRT 181

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
             +WNSMI  Y   G  +EA+R+F  M  EG  P  +++ ++ S  A    L+ GK A  
Sbjct: 182 SASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWAR- 240

Query: 308 VAVINGMELDN-VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
            ++I   +L N ++ ++++  Y K   +++A   F RM +RD+V W+ +IA Y Q+G+  
Sbjct: 241 -SLIAEQDLQNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRP- 298

Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
                  ++++   ER+       N + L  V      L+A A LG      ++   ++ 
Sbjct: 299 ----HESLELF---ERMKATSCKPNEVTLVGV------LSACAQLGSDELGGQIGSHVES 345

Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
           + +       +++I  + + G +  A+ +F +M+   V    ITW +++ GL  N    +
Sbjct: 346 QNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVV----ITWNSMMRGLALNGFAQD 401

Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-HDLCLPTPIVTSLV 545
           AI  ++EM E  ++P+  T    L+ACT    +  G +    +   H +         +V
Sbjct: 402 AITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIV 461

Query: 546 DMYAKCGNIHQA-KRVFDISPSKELPVYNAMISGYAMHG-LAVEALALFKNLQQKGIDPD 603
           D+  K G + +A K + D+       +++ ++S    H  + +  LA  K L    ++PD
Sbjct: 462 DLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLV---LEPD 518

Query: 604 SITFTNIL-NACSHAGLVNEGLEL 626
           + +   +L N  + AGL  +  E+
Sbjct: 519 NSSIYVLLSNIYADAGLWGDVREI 542



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 181/400 (45%), Gaps = 17/400 (4%)

Query: 33  LRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYK 92
           +R +  S+ S+   Y H         + +EA+ L   M     +        +   C   
Sbjct: 178 VRRTSASWNSMIACYAHG-------GEYQEALRLFRRMLSEGARPNAITIATMFSICAKT 230

Query: 93  RDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAA 152
            D+ TG+   + I +      +N  V T L+  Y KC A+D A R F R++ ++V +W+ 
Sbjct: 231 GDLETGKWARSLIAEQD---LQNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWST 287

Query: 153 IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212
           +I    + G   ++L  F  M+     P+   L  VL AC  LG    G  +  +V    
Sbjct: 288 MIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQN 347

Query: 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
                ++ S+LIDMY KCG +  AR VF+ M  + V+ WNSM+ G   NG  ++AI ++ 
Sbjct: 348 LPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYK 407

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQ-AHAVAVINGMELDNVLGSSIINFYSKV 331
           EMT E V+P  ++  ++L+A  +   +D+G      +  I+ +       + I++   K 
Sbjct: 408 EMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKS 467

Query: 332 GLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVF 390
           G L +A      M VE + V W+ L+++      +DV +A          E  +++  V 
Sbjct: 468 GRLREAYKFICDMEVEPNAVIWSTLLSAC--RAHADVELAKLAASKLLVLEPDNSSIYVL 525

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRL--FYQMQLEG 428
            S I  D  LW   +    DL RS    +L  +  ++L+G
Sbjct: 526 LSNIYADAGLWGD-VREIRDLMRSKNVQKLSAYSWIELDG 564


>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
          Length = 589

 Score =  316 bits (809), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 178/529 (33%), Positives = 283/529 (53%), Gaps = 29/529 (5%)

Query: 245 ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304
           +R+   WN+++  +        ++  F  M    V P   +  ++L A         G  
Sbjct: 79  SRHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRVAVAPDAYTFPAVLKACGCAPGCRVGLV 137

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364
            H  AV  G++ D    +++I+FY ++G       VF   V RD+V+WN ++A YV  G+
Sbjct: 138 VHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGV-RDLVSWNSMVAGYVGCGE 196

Query: 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADL-GRSGEASRLFYQ 423
                             +D A+ +F+ +  RD   W T++  Y ++ G    A  LF Q
Sbjct: 197 ------------------VDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQ 238

Query: 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483
           M       +++ WNS+I G+ R+G+M+EA+ +F +M     + N+I+W+ +I G  +   
Sbjct: 239 MP----DRDLVCWNSMIDGYARHGRMDEARVLFEEMP----ERNVISWSIVIDGYVRFGE 290

Query: 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543
            NEA+ FFQ ML  GIKP       A++AC  + +L  GR +H YL +  +     + T+
Sbjct: 291 PNEALEFFQRMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTA 350

Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
           L+DMY KCG +  AK +F+  P K +  +N MI G   HG  ++A+ LF  ++ +    D
Sbjct: 351 LIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMD 410

Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
            ++   +L +C+HAGLV+EGL +F  M  D  ++P +EH+G +++LL R G +D+A   I
Sbjct: 411 DLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTI 470

Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
            TMP +P   + GSLL++C      ELAE   E L  L  D+ G YV LSN YA  G W+
Sbjct: 471 ETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWD 530

Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           +V ++R +M  +G++KN G S I++  ++H FV    SHP  EEIY TL
Sbjct: 531 DVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTL 579



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 197/426 (46%), Gaps = 73/426 (17%)

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204
           ++ F W  ++ L+       ++L+ F  M+   V+PD +  P VLKACG       G  V
Sbjct: 80  RHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRVAVAPDAYTFPAVLKACGCAPGCRVGLVV 138

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           HG  ++ G D  +F  ++LI  Y + GD    RKVFD  + R++V+WNSM+ GYV  G  
Sbjct: 139 HGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGV-RDLVSWNSMVAGYVGCGEV 197

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE--GKQAHAVAVINGM-ELDNVLG 321
           + A  +F EM                S +  +D   E  G    A  + + M + D V  
Sbjct: 198 DLAQDLFDEMRQR----------DAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCW 247

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------------- 365
           +S+I+ Y++ G +++A V+F  M ER++++W+++I  YV+ G+                 
Sbjct: 248 NSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLSCGIK 307

Query: 366 ------------------------------------DVVVASSIVDMYAKCERIDNAKQV 389
                                               DVVV ++++DMY KC R+D AK +
Sbjct: 308 PDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLI 367

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           F S+  + VV WN ++      G   +A +LF QM+ E    + +S  +V+      G +
Sbjct: 368 FESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSVLAVLTSCTHAGLV 427

Query: 450 NEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTIT 507
           +E   +F +M+  LG++P +  +  LI  L +    ++A    +  +ET  ++P+     
Sbjct: 428 SEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQA----RNTIETMPMEPTPELWG 483

Query: 508 CALSAC 513
             L++C
Sbjct: 484 SLLASC 489



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 184/417 (44%), Gaps = 51/417 (12%)

Query: 63  AVDLLTEMKCRN-FQIGPEI--YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119
           A DL  EM+ R+ F     I  YGE+  G    R+++         + + D    N  ++
Sbjct: 200 AQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQ-------MPDRDLVCWNSMID 252

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
                 YA+   +D A  LF  +  +NV SW+ +I    R G   +AL  F  M   G+ 
Sbjct: 253 G-----YARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLSCGIK 307

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYV--LKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           PD       + AC  LG +  GR +H Y+   KV FD  V V ++LIDMY KCG L+ A+
Sbjct: 308 PDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFD--VVVQTALIDMYVKCGRLDLAK 365

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
            +F+ M  ++VV WN MIVG   +G   +AI++F +M  E      +SV ++L++  +  
Sbjct: 366 LIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSVLAVLTSCTHAG 425

Query: 298 ALDEGKQAHAVAVINGMELDNVLG------SSIINFYSKVGLLEDAEVVFSRM-VERDIV 350
            + EG     + +   ME D  L        ++I+   + G ++ A      M +E    
Sbjct: 426 LVSEG-----LGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPE 480

Query: 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410
            W  L+AS        V +A   V+  A     D+   V  S I  D  +W+ +      
Sbjct: 481 LWGSLLASC--RSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVF----- 533

Query: 411 LGRSGEASRLFYQMQLEGISPNI----ISWNSVILGFLRNGQMNEAK-DMFLQMQSL 462
                   R+   M  EG+  NI    I  +  I  F+  G  +  K +++L + +L
Sbjct: 534 --------RIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTLWNL 582


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  316 bits (809), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 175/520 (33%), Positives = 290/520 (55%), Gaps = 33/520 (6%)

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P  +S   +      L+ L  G Q HA  ++ G++   ++GS ++ FY+  G ++ +  V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIV--------DMYAKCERIDNAKQVF-- 390
           F+ + E   + +N +I +Y + G ++  VA+           D +     + ++ ++   
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 391 ------NSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
                 + +ILR     D+ +  +L+  Y   G   +A ++F  M +  +S    SWN++
Sbjct: 188 WMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVS----SWNAL 243

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML--ET 497
           + G+ ++G ++ A  +F +M       N+++WTT+ISG +Q+    +A+  F EM+  ++
Sbjct: 244 LAGYTKSGCIDAALAIFERMP----WRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDS 299

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
           G++P+  TI   L AC  +++L  GR IH    R  L     ++ +L  MYAKCG++  A
Sbjct: 300 GVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDA 359

Query: 558 KRVFDI--SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
           +  FD      K L  +N MI+ YA +G  ++A++ F+ + Q GI PD ITFT +L+ CS
Sbjct: 360 RNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCS 419

Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675
           H+GLV+ GL+ F  M + + + P +EH+ CV +LL R G L EA +++  MP      I 
Sbjct: 420 HSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIW 479

Query: 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
           GSLL+ C K    E+AE  +  L  LEP+N GNYV LSN YA +GRW EV ++R I+K +
Sbjct: 480 GSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQ 539

Query: 736 GLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           G +K+PGCSWI+I  + H+F+  D SHP+ +EIY  L  L
Sbjct: 540 GTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEAL 579



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 201/423 (47%), Gaps = 70/423 (16%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G Q+HA +L  G        V +K+V FYA    +D +  +F  +   +   + ++I   
Sbjct: 89  GHQVHAHMLLRG--LQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAY 146

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            R G +E+ +  +  M   G + D F  P VLK+   L  V  G+ VHG +L++G    +
Sbjct: 147 ARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDL 206

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIA-------------------------------R 246
           +VA+SLI +YGKCG++ +A KVFD M                                 R
Sbjct: 207 YVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWR 266

Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE--GVEPTRVSVTSILSASANLDALDEGKQ 304
           N+V+W +MI GY Q+GL ++A+ +F EM  E  GV P  V++ S+L A A L  L+ G+Q
Sbjct: 267 NIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQ 326

Query: 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM--VERDIVTWNLLIASY--- 359
            H +A   G+  +  +  ++   Y+K G L DA   F ++   E++++ WN +I +Y   
Sbjct: 327 IHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASY 386

Query: 360 -------------VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                        +Q+G Q D +  + ++   +    +D   + FN +     +  N  +
Sbjct: 387 GHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSI--NPRV 444

Query: 406 AAY---ADL----GRSGEASRLFYQMQLEGISPNIISWNSVILGFL--RNGQMNE--AKD 454
             Y   ADL    GR  EAS+L  +M +    P+I  W S++      RN +M E  A+ 
Sbjct: 445 EHYACVADLLGRAGRLAEASKLVGEMPMPA-GPSI--WGSLLAACRKHRNLEMAETAARK 501

Query: 455 MFL 457
           +F+
Sbjct: 502 LFV 504



 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 162/364 (44%), Gaps = 57/364 (15%)

Query: 188 VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247
           V +    L  +  G  VH ++L  G      V S ++  Y   GD++ +  VF+G+   +
Sbjct: 76  VFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPS 135

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
            + +NSMI  Y + G  E  +  ++ M   G      +   +L +S  L ++  GK  H 
Sbjct: 136 SLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHG 195

Query: 308 VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDV 367
           + +  G++ D  + +S+I  Y K G + DA  VF  M  RD+ +WN L+A Y +SG    
Sbjct: 196 LILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSG---- 251

Query: 368 VVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427
                       C  ID A  +F  +  R++V W T+++ Y+  G + +A  LF +M  E
Sbjct: 252 ------------C--IDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKE 297

Query: 428 --GISPNIISWNSVILG-----------------------------------FLRNGQMN 450
             G+ PN ++  SV+                                     + + G + 
Sbjct: 298 DSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLV 357

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
           +A++ F ++     + NLI W T+I+       G +A+  F+EM++ GI+P   T T  L
Sbjct: 358 DARNCFDKLNR--NEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLL 415

Query: 511 SACT 514
           S C+
Sbjct: 416 SGCS 419


>gi|297721495|ref|NP_001173110.1| Os02g0670700 [Oryza sativa Japonica Group]
 gi|50251347|dbj|BAD28323.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255671158|dbj|BAH91839.1| Os02g0670700 [Oryza sativa Japonica Group]
          Length = 687

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 196/680 (28%), Positives = 335/680 (49%), Gaps = 88/680 (12%)

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           R G  E+ +I +  ++   +  D   +  VLK+C  L  +  G+ +H   LK G  G  F
Sbjct: 6   RAGYPEEVIILYKRLKLHQIGLDGKTITFVLKSCTELENLYLGKGMHVDSLKFGLSGDKF 65

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY--VQNGLNEEAIRVFYEMTL 276
           + SSLI +Y K   +++++ VF  +I ++VVA+ SMI GY  + + +   A  +  +M  
Sbjct: 66  IGSSLIVLYSKLHRMDDSQGVFKEIIDKDVVAYTSMITGYSEIVDSVAWNAFDIAIDMLQ 125

Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL-DNVLGSSIINFYSKVGLLE 335
             +E  RV++ S+L  + NL AL EGK  H  ++   + + D +L + I+N Y++ G  +
Sbjct: 126 GNLEVNRVTMISLLQIAGNLGALKEGKSLHCYSIRRALVVSDYILETCIVNLYTRCGAYQ 185

Query: 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQS------------------------------ 365
            A V   +  +    +WN +++   ++GQS                              
Sbjct: 186 SA-VATLQNSKGTAASWNAMLSGLTRAGQSFDAIHYLSVMLHEHKITPDSVTFANVISAC 244

Query: 366 -----------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402
                                  DVV+A+++V +Y+KC++I  ++ +FN +I++D V +N
Sbjct: 245 VEVCYFGYAASIHTYLIRRYIPLDVVLATALVKVYSKCKKITISRHLFNQLIVKDAVSYN 304

Query: 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF----------------LRN 446
            ++  Y   G + EA+ L   M  EGI P+  +  S++  F                +R+
Sbjct: 305 AMMYGYLHNGMANEATSLLNYMMAEGIVPDFATVLSLLAAFADQRDLVRGRWIHGFGIRH 364

Query: 447 GQMNEA--KDMFLQMQSLGVQP-------------NLITWTTLISGLTQNSCGNEAILFF 491
           G  ++   ++  L M S+  +P             +L++WT ++ G      G+E +  F
Sbjct: 365 GFCSDGDVENHILYMYSVCGKPAAARVIFDLLEQKSLVSWTAMMKGCLPYGHGDEVVQLF 424

Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
             M + G KP + ++  A+ A +++  L   + IH ++ R  L        SL+  YAKC
Sbjct: 425 HLMQKHGEKPDSMSLVTAVQAVSELGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKC 484

Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
           G +  +  +F     + L  +NA+IS YAMHG  +  L +FK ++++ I PD +TF+ +L
Sbjct: 485 GRLDLSVGLFFSLEYRNLDTWNAIISAYAMHGFYINMLEMFKQMEEENIQPDELTFSTVL 544

Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
            ACSHAGLV +G  +F  M S + V P  EH+GC+V+LL R G+L++  + I        
Sbjct: 545 TACSHAGLVKDGWRMFNSMTSVYSVLPQEEHYGCMVDLLGRAGHLEDGYKFIKLSTLKDK 604

Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
           + I   L+S C     T+LA  IS+ LL+  P  PG Y  +S  YA  G+WNE +  R  
Sbjct: 605 STIFCVLISACRTHRNTQLALAISKELLEHGPQKPGIYALISEVYAQEGQWNEFTNTRAR 664

Query: 732 MKEKGLRKNPGCSWIQIGEE 751
               GL+K+PG S+I++ E+
Sbjct: 665 ANLSGLKKHPGSSFIELMEQ 684



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 218/496 (43%), Gaps = 36/496 (7%)

Query: 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM 314
           +V Y + G  EE I ++  + L  +     ++T +L +   L+ L  GK  H  ++  G+
Sbjct: 1   MVDYFRAGYPEEVIILYKRLKLHQIGLDGKTITFVLKSCTELENLYLGKGMHVDSLKFGL 60

Query: 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIV 374
             D  +GSS+I  YSK+  ++D++ VF  ++++D+V +  +I  Y           S IV
Sbjct: 61  SGDKFIGSSLIVLYSKLHRMDDSQGVFKEIIDKDVVAYTSMITGY-----------SEIV 109

Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF-YQMQLEGISPNI 433
           D  A     D A  +    +  + V   +LL    +LG   E   L  Y ++   +  + 
Sbjct: 110 DSVA-WNAFDIAIDMLQGNLEVNRVTMISLLQIAGNLGALKEGKSLHCYSIRRALVVSDY 168

Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
           I    ++  + R G    A       +         +W  ++SGLT+     +AI +   
Sbjct: 169 ILETCIVNLYTRCGAYQSAVATLQNSKGTAA-----SWNAMLSGLTRAGQSFDAIHYLSV 223

Query: 494 ML-ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           ML E  I P + T    +SAC +V       +IH YLIR  + L   + T+LV +Y+KC 
Sbjct: 224 MLHEHKITPDSVTFANVISACVEVCYFGYAASIHTYLIRRYIPLDVVLATALVKVYSKCK 283

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
            I  ++ +F+    K+   YNAM+ GY  +G+A EA +L   +  +GI PD  T  ++L 
Sbjct: 284 KITISRHLFNQLIVKDAVSYNAMMYGYLHNGMANEATSLLNYMMAEGIVPDFATVLSLLA 343

Query: 613 ACSHA-----GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
           A +       G    G  +  G  SD  V+        ++ + S CG    A RVI  + 
Sbjct: 344 AFADQRDLVRGRWIHGFGIRHGFCSDGDVENH------ILYMYSVCGK-PAAARVIFDLL 396

Query: 668 CDPDAHIIGSLLSTCVK-SNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS--GRWNE 724
                    +++  C+   +  E+ +    HL+Q   + P +   ++   A S  G  N 
Sbjct: 397 EQKSLVSWTAMMKGCLPYGHGDEVVQLF--HLMQKHGEKPDSMSLVTAVQAVSELGHLNG 454

Query: 725 VSQVRDIMKEKGLRKN 740
           + Q+   +    L K+
Sbjct: 455 LKQIHCFVYRSLLEKD 470


>gi|15237290|ref|NP_200097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171558|sp|Q9FLX6.1|PP430_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g52850, chloroplastic; Flags: Precursor
 gi|10177099|dbj|BAB10433.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008885|gb|AED96268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 893

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 212/760 (27%), Positives = 361/760 (47%), Gaps = 88/760 (11%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G  IH  ++K G     N  +   L+  Y K D +  A +LF  +  + VF+W  +I   
Sbjct: 42  GLHIHCPVIKFG--LLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFAWTVMISAF 99

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            +      AL  F EM   G  P+ F   +V+++C  L  + +G  VHG V+K GF+G  
Sbjct: 100 TKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNS 159

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            V SSL D+Y KCG  +EA ++F  +   + ++W  MI   V      EA++ + EM   
Sbjct: 160 VVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKA 219

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           GV P   +   +L AS+ L  L+ GK  H+  ++ G+ L+ VL +S+++FYS+   +EDA
Sbjct: 220 GVPPNEFTFVKLLGASSFL-GLEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDA 278

Query: 338 EVVFSRMVERDIVTWNLLIASY-------------------------------------- 359
             V +   E+D+  W  +++ +                                      
Sbjct: 279 VRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAV 338

Query: 360 -------------VQSGQSDVV-VASSIVDMYAKCERID-NAKQVFNSIILRDVVLWNTL 404
                        ++ G  D   V +++VDMY KC   +  A +VF +++  +VV W TL
Sbjct: 339 RSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTL 398

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILG----------------FLR--- 445
           +    D G   +   L  +M    + PN+++ + V+                   LR   
Sbjct: 399 ILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHV 458

Query: 446 NGQM---NEAKDMFLQMQSLGVQPNLI---------TWTTLISGLTQNSCGNEAILFFQE 493
           +G+M   N   D +   + +    N+I         T+T+L++   +      A+     
Sbjct: 459 DGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMALSVINY 518

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           M   GI+    ++   +SA  ++ +L  G+ +H Y ++        ++ SLVDMY+KCG+
Sbjct: 519 MYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGS 578

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           +  AK+VF+   + ++  +N ++SG A +G    AL+ F+ ++ K  +PDS+TF  +L+A
Sbjct: 579 LEDAKKVFEEIATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFLILLSA 638

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           CS+  L + GLE F  M   + ++P +EH+  +V +L R G L+EA  V+ TM   P+A 
Sbjct: 639 CSNGRLTDLGLEYFQVMKKIYNIEPQVEHYVHLVGILGRAGRLEEATGVVETMHLKPNAM 698

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           I  +LL  C       L E ++   L L P +P  Y+ L++ Y  SG+     + R++M 
Sbjct: 699 IFKTLLRACRYRGNLSLGEDMANKGLALAPSDPALYILLADLYDESGKPELAQKTRNLMT 758

Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSH-PKTEEIYATL 772
           EK L K  G S +++  ++H FV+ D +   KT  IYA +
Sbjct: 759 EKRLSKKLGKSTVEVQGKVHSFVSEDVTRVDKTNGIYAEI 798



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 16/218 (7%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
           LS C   +S R G  IH  +I+  L     +  +L+ +Y K   I  A+++FD    + +
Sbjct: 31  LSFCESNSS-RIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTV 89

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC------SHAGLVNEG 623
             +  MIS +        AL+LF+ +   G  P+  TF++++ +C      S+ G V+ G
Sbjct: 90  FAWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVH-G 148

Query: 624 LELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683
             +  G   +  V  S+       +L S+CG   EA  +  ++  + D      ++S+ V
Sbjct: 149 SVIKTGFEGNSVVGSSLS------DLYSKCGQFKEACELFSSLQ-NADTISWTMMISSLV 201

Query: 684 KSNE-TELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
            + +  E  ++ SE +    P N   +V L  A +  G
Sbjct: 202 GARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFLG 239


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  315 bits (808), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 193/637 (30%), Positives = 312/637 (48%), Gaps = 92/637 (14%)

Query: 202 RAVHGYVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           +A+H +V+  G   G +   S+L   Y  CG +  ARK+FD M   +++++N +I  YV+
Sbjct: 35  KALHCHVITGGRVSGHIL--STLSVTYALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVR 92

Query: 261 NGLNEEAIRVFYEMTLEGVE--PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           +GL  +AI VF  M  EG++  P   +   +  A+  L ++  G   H   + +   +D 
Sbjct: 93  DGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVIHGRILRSWFGMDK 152

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD------------ 366
            + ++++  Y   G +E A  VF  M  RD+++WN +I+ Y ++G  +            
Sbjct: 153 YVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNE 212

Query: 367 ----------------------------------------VVVASSIVDMYAKCERIDNA 386
                                                   + V +++V+MY KC R+D A
Sbjct: 213 GVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEA 272

Query: 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446
           + VF  +  RDV+ W  ++  Y + G    A  L   MQ EG+ PN ++  S++      
Sbjct: 273 RFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDA 332

Query: 447 GQMNEAK-------------------------------DMFLQMQSLGVQPNLITWTTLI 475
            ++N+ K                               D+  ++ S   + +   W+ +I
Sbjct: 333 LKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAII 392

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
           +G  QN    +A+  F+ M    ++P+  T+   L A   +A LR    IH YL +    
Sbjct: 393 AGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFM 452

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVF----DISPSKELPVYNAMISGYAMHGLAVEALAL 591
                 T LV +Y+KCG +  A ++F    +   SK++ ++ A+ISGY MHG    AL +
Sbjct: 453 SSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQV 512

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
           F  + + G+ P+ ITFT+ LNACSH+GLV EGL LF  M   ++      H+ C+V+LL 
Sbjct: 513 FMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLG 572

Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711
           R G LDEA  +I T+P +P + I G+LL+ CV     +L E  +  L +LEP+N GNYV 
Sbjct: 573 RAGRLDEAYNLITTIPFEPTSTIWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVL 632

Query: 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
           L+N YAA GRW ++ +VR++M+  GLRK PG S I+I
Sbjct: 633 LANIYAALGRWKDMEKVRNMMENVGLRKKPGHSTIEI 669



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 15/195 (7%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           I+   + + +R+A+DL   M+  + +        LL       D+     IH  + K G 
Sbjct: 392 IAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTG- 450

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFC----RLRVKNVFSWAAIIGLNCRVGLSEKA 166
            F  +    T LV  Y+KC  L+ A ++F     + + K+V  W A+I      G    A
Sbjct: 451 -FMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNA 509

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS---- 222
           L  F+EM   GV+P+     + L AC   G V  G  +  ++L    +    +A S    
Sbjct: 510 LQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFSFML----EHYKTLARSNHYT 565

Query: 223 -LIDMYGKCGDLEEA 236
            ++D+ G+ G L+EA
Sbjct: 566 CIVDLLGRAGRLDEA 580


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  315 bits (808), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 174/555 (31%), Positives = 282/555 (50%), Gaps = 92/555 (16%)

Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
           +G   H   V  G      + +++I+FY+K   +EDA +VF  M +RDI++WN +I    
Sbjct: 2   DGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 361 QSGQSDVVV--------------------------------------------------- 369
            +G  D  V                                                   
Sbjct: 62  SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETS 121

Query: 370 -ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
             ++++DMY+ C    +  ++F ++  ++VV W  ++ +Y   G   + + LF +M LEG
Sbjct: 122 LGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEG 181

Query: 429 ISPNIISWNSVILGF----------------LRNG-------------------QMNEAK 453
           I P++ +  S +  F                +RNG                    M EA+
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEAR 241

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
            +F  +     + + I+W TLI G ++++  NEA   F EML   ++P+  T+ C L A 
Sbjct: 242 FIFDHV----TKKDTISWNTLIGGYSRSNLANEAFTLFNEML-LQLRPNAVTMACILPAA 296

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
             ++SL  GR +H Y +R        +  +LVDMY KCG +  A+R+FD+  +K L  + 
Sbjct: 297 ASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWT 356

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            MI+GY MHG   +A+ALF+ ++  GI PD+ +F+ IL ACSH+GL +EG   F  M ++
Sbjct: 357 IMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNE 416

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           H+++P ++H+ C+V+LL   GNL EA   I TMP +PD+ I  SLL  C      +LAE 
Sbjct: 417 HRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEK 476

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
           ++E + +LEP+N G YV L+N YA + RW  V ++++ +  +GLR+N GCSWI++  + H
Sbjct: 477 VAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAH 536

Query: 754 VFVACDRSHPKTEEI 768
           +F A +R+HP+   I
Sbjct: 537 IFFAENRNHPQGMRI 551



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 219/468 (46%), Gaps = 57/468 (12%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G  +H  ++K G  F     V   L+ FYAK + ++ A  +F  +  +++ SW +IIG  
Sbjct: 3   GLVVHGYLVKYG--FGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGC 60

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
              GL +KA+  FV M  +G   D+  L +V+ AC    +   G  VHGY ++ G     
Sbjct: 61  ASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISET 120

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            + ++L+DMY  C D     K+F  M  +NVV+W +MI  Y + G  ++   +F EM LE
Sbjct: 121 SLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLE 180

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           G+ P   ++TS L A A  ++L  GK  H  A+ NG+E    + ++++  Y K G +E+A
Sbjct: 181 GIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEA 240

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQS-------------------------------- 365
             +F  + ++D ++WN LI  Y +S  +                                
Sbjct: 241 RFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAASLS 300

Query: 366 -------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
                              D  VA+++VDMY KC  +  A+++F+ +  ++++ W  ++A
Sbjct: 301 SLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIA 360

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQ 465
            Y   GR  +A  LF QM+  GI P+  S+++++     +G  +E    F  M++   ++
Sbjct: 361 GYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIE 420

Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           P L  +  ++  L       EA  F + M    I+P ++     L  C
Sbjct: 421 PKLKHYACMVDLLCHTGNLKEAYEFIETM---PIEPDSSIWVSLLRGC 465


>gi|413941673|gb|AFW74322.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
          Length = 1028

 Score =  315 bits (808), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 203/688 (29%), Positives = 348/688 (50%), Gaps = 28/688 (4%)

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
           ETKL+  ++    L  A ++F  +  +++ +W+A+IG     GL E+ +   V M  +GV
Sbjct: 102 ETKLITVHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYEEVVALAVAMVREGV 161

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF--DGC--VFVASSLIDMYGKCGDLE 234
            PD F++  +L+AC     +  G A+H   ++ GF  +G   V V +S++ MY KCG+L 
Sbjct: 162 IPDRFLITRILQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVKCGELG 221

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
            AR  FD M  R++  WNSMI G  ++   EEA R+  +M  +G EP  V+  +++S+ A
Sbjct: 222 RARAAFDMMGQRDLCTWNSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTLVSSYA 281

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
               LD   +       +G+  D V  +S+++ +       +A   F+RM    +    +
Sbjct: 282 RSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAGVEPNGM 341

Query: 355 LIASYVQSGQS---------------------DVVVASSIVDMYAKCERIDNAKQVFNSI 393
            IAS + +  S                     +V+  +S+VDMYAKC  I  AK+VF+ I
Sbjct: 342 TIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAKRVFDEI 401

Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
             +D+  WN+++A YA  G  G+A  LF +M+  G+  N+I+WN +I G++RNG    A 
Sbjct: 402 PEKDIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGYIRNGDDERAF 461

Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           ++F  M+S GV+ +  +W  LI+G   N   + A+  F +M    ++P   TI   + A 
Sbjct: 462 ELFQMMESCGVKRDTASWNALIAGSVHNGHSDRALRIFWQMQSLLVRPDFITILSIIPAF 521

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYN 573
            ++A     R IH  +  ++L +   I  +L++ Y+K G++  A  VFD   S+ +  +N
Sbjct: 522 ANLAGFWKVREIHACIYHNNLEMDGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWN 581

Query: 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633
            +I  + +HG   EAL  F  ++Q+G+ PD  T T ++ A    G V+E   +F  M  D
Sbjct: 582 CIILAHLLHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEAKRIFHNMTHD 641

Query: 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEY 693
           + + P ++H+  +V+LL R G+L EA   I  MP  P+  +  +LL+         LA  
Sbjct: 642 YNIIPDLDHYTAIVDLLGRSGSLQEAYEFIGNMPLIPNLAVWEALLTAATIHGNARLANL 701

Query: 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753
            +  L  L+P +P     + N +  +G+  +V  +      + L     CS ++I   ++
Sbjct: 702 TARELSSLDPSDPRIQRLVFNYWGLTGKSVDVPLMTVYNGGRELEDVDSCS-VEIKNNVY 760

Query: 754 VFVACDRSHPKTEEIYATLALLGMHVRL 781
           +F   D  +   E   A L L+ + +R+
Sbjct: 761 LFSTGD--NLALESTVAELKLIMIQIRM 786



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 12/170 (7%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           ++IHA I  N      +  +   L+  Y+K   L  A  +F R   +N+ SW  II  + 
Sbjct: 531 REIHACIYHNN--LEMDGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWNCIILAHL 588

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG-----FGRAVHGYVLKVGF 213
             G   +AL  F EM+++GV PD+  L  V+KA G  G V      F    H Y +    
Sbjct: 589 LHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEAKRIFHNMTHDYNIIPDL 648

Query: 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGM-IARNVVAWNSMIVGYVQNG 262
           D      ++++D+ G+ G L+EA +    M +  N+  W +++     +G
Sbjct: 649 DH----YTAIVDLLGRSGSLQEAYEFIGNMPLIPNLAVWEALLTAATIHG 694


>gi|125555089|gb|EAZ00695.1| hypothetical protein OsI_22717 [Oryza sativa Indica Group]
          Length = 992

 Score =  315 bits (808), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 205/733 (27%), Positives = 345/733 (47%), Gaps = 90/733 (12%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G  +HA  LK+G     +E V    +  YA    L  +  LF +  V N+ S  ++I + 
Sbjct: 262 GDPLHAFALKSG--VLGDESVTPAFISMYAAFGHLSSSLSLFHQSLVDNLVSCNSMISVC 319

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            + G  EKA   F  M+  G+ P+   + ++L  C     +  G +VHG V+K G    V
Sbjct: 320 MQHGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIKFGLAEQV 379

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            V S+L+ MY K GDL+ A  +F  +  ++ + WNS+I GY+ N      +     M +E
Sbjct: 380 SVVSALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIE 439

Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
           GV+P  ++V S++S   + + L  GK  HA AV + +EL+  + ++++  Y+  G L   
Sbjct: 440 GVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSIC 499

Query: 338 EVVFSRMVERDIVTWNLLIASYVQSGQS-------------------------------- 365
             +F  M  R +++WN +I+ + ++G S                                
Sbjct: 500 CKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLSAI 559

Query: 366 --------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
                               DV VA++++ MY  C  I   +++F+S+   + + +N L+
Sbjct: 560 EDITVGESVHSLAIRSGCNLDVSVANALITMYTNCGIIQAGEKLFDSLSSVNTISYNALM 619

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIIS------------------------------ 435
             Y       E   LFY M      PNII+                              
Sbjct: 620 TGYRKNNLFKEILPLFYHMIKNDQKPNIITLLNLLPICHSQLQGKTVHSYAIRNFSKLET 679

Query: 436 --WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
             + S I  + R   +    ++F     L  + N I W  ++S   Q      A  +F++
Sbjct: 680 SLFTSAICMYSRFNNLEYCHNLF----CLVGERNNIVWNAILSACVQCKQAGVAFDYFRQ 735

Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
           +    +K    T+   +SAC+ +        +    ++        ++ +L+DM+++CG+
Sbjct: 736 IQFLNVKTDAVTMLALISACSQLGKADLAECVTAIALQKGFDGTIVVLNALIDMHSRCGS 795

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
           I  A+++FDIS  K+   ++ MI+ Y+MHG    AL LF  +   GI PD ITF ++L+A
Sbjct: 796 ISFARKIFDISMEKDSVSWSTMINAYSMHGDGGSALDLFLMMVSTGIKPDDITFVSVLSA 855

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
           CS +G + +G  LF  M +DH + P MEH+ C+V+LL R G+LDEA  ++ TMP  P   
Sbjct: 856 CSRSGFLEQGRTLFRSMLADHGITPRMEHYACMVDLLGRTGHLDEAYDIVTTMPFRPSKS 915

Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
           ++ SLL  C     ++L E + + L + +  NP +YV LSN YA++G+W++  ++R  M+
Sbjct: 916 LLESLLGACRFHGNSKLGESVGKILTESDHGNPRSYVMLSNIYASAGKWSDYERLRSDME 975

Query: 734 EKGLRKNPGCSWI 746
            KGL K+ G S I
Sbjct: 976 AKGLIKDVGVSLI 988



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 188/718 (26%), Positives = 318/718 (44%), Gaps = 106/718 (14%)

Query: 74  NFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALD 133
           NF   P     +++ C     +  G+++H R+++ G     N  V+T L+  YAK   +D
Sbjct: 142 NFTFPP-----VIRACAAVSCLRLGKEVHCRVVRTGH--GGNVGVQTALLDMYAKSGQVD 194

Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACG 193
           ++ R+F  ++ +++ SW A+I      G   +A     +MQ+DG  P+   L  ++    
Sbjct: 195 LSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGFRPNASSLVGIVSMVS 254

Query: 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNS 253
            LG    G  +H + LK G  G   V  + I MY   G L  +  +F   +  N+V+ NS
Sbjct: 255 GLGVRDAGDPLHAFALKSGVLGDESVTPAFISMYAAFGHLSSSLSLFHQSLVDNLVSCNS 314

Query: 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING 313
           MI   +Q+G  E+A  VF  M  +G+ P  V+V SIL   +N   ++ G+  H + +  G
Sbjct: 315 MISVCMQHGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIKFG 374

Query: 314 MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVAS-- 371
           +     + S++++ YSK+G L+ A  +FS + E+  + WN LI+ Y+ + + ++V+ S  
Sbjct: 375 LAEQVSVVSALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVR 434

Query: 372 ------------SIVDMYAKCERIDN--------AKQVFNSIILRDVVLWNTLLAAYADL 411
                       +++ + +KC   ++        A  V + + L + V+ N LLA YAD 
Sbjct: 435 RMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVM-NALLAMYADC 493

Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471
           G+     +LF+ M++      +ISWN++I GF  NG        F QM+   +Q +L+T 
Sbjct: 494 GQLSICCKLFHTMEVR----TLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTL 549

Query: 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531
             LIS                                +LSA  D+     G ++H   IR
Sbjct: 550 IALIS--------------------------------SLSAIEDITV---GESVHSLAIR 574

Query: 532 HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALAL 591
               L   +  +L+ MY  CG I   +++FD   S     YNA+++GY  + L  E L L
Sbjct: 575 SGCNLDVSVANALITMYTNCGIIQAGEKLFDSLSSVNTISYNALMTGYRKNNLFKEILPL 634

Query: 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF----------------VGMFSDHQ 635
           F ++ +    P+ IT  N+L  C H+ L  + +  +                + M+S   
Sbjct: 635 FYHMIKNDQKPNIITLLNLLPIC-HSQLQGKTVHSYAIRNFSKLETSLFTSAICMYSRFN 693

Query: 636 VKPSMEHFGCVVN---------LLSRCGNLDEA------LRVILTMPCDPDAHIIGSLLS 680
                 +  C+V          +LS C    +A       R I  +    DA  + +L+S
Sbjct: 694 NLEYCHNLFCLVGERNNIVWNAILSACVQCKQAGVAFDYFRQIQFLNVKTDAVTMLALIS 753

Query: 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR---DIMKEK 735
            C +  + +LAE ++   LQ   D  G  V L+       R   +S  R   DI  EK
Sbjct: 754 ACSQLGKADLAECVTAIALQKGFD--GTIVVLNALIDMHSRCGSISFARKIFDISMEK 809


>gi|255560453|ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539509|gb|EEF41097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 662

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 199/648 (30%), Positives = 343/648 (52%), Gaps = 52/648 (8%)

Query: 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQ 174
           N Y   K +  + +   ++ A  LF +L  +N  +W ++I    + G   KA   F EM 
Sbjct: 46  NLYSSNKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEMP 105

Query: 175 EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLE 234
           E  V   N ++   + +C    ++  GR +   +     + C    +++I  Y K G ++
Sbjct: 106 ERDVVSWNLIISGYV-SCRGKRFIEEGRNLFDKMP----ERCCVSWNTMISGYAKNGRMD 160

Query: 235 EARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
           EA  +F+ M  +N V+WN+M+ G++QNG    AI  F  M    V     S+++++S   
Sbjct: 161 EALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPERDV----TSLSALVSGLI 216

Query: 295 NLDALDEGKQAHAVAVINGMELDNVLGS--SIINFYSKVGLLEDAEVVFSRM-------- 344
               LD+ ++       NG   + ++ +  ++I  Y + G +++A+ +F ++        
Sbjct: 217 QNSELDQAERILLDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGK 276

Query: 345 -----VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399
                 ER++V+WN +I  YV++G  DV+                +A+++F+ +  RD  
Sbjct: 277 GRTGRFERNVVSWNTMIMCYVKAG--DVI----------------SARKLFDQMPDRDSF 318

Query: 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459
            WNT+++ Y  +    EAS LF++M     SP+ +SWN +I G+ ++G +  A D F +M
Sbjct: 319 SWNTMISGYVHVLDMEEASNLFHKMP----SPDTLSWNLMISGYAQSGSLELAHDFFERM 374

Query: 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519
                Q NL++W ++I+G  +N     AI  F +M   G K    T++  LS  + +  L
Sbjct: 375 P----QKNLVSWNSVIAGYEKNGDYIGAINLFIQMQVEGEKSDRHTLSSLLSVSSGIVDL 430

Query: 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISG 578
           + G  IH  L+   +    P+  +L+ MY++CG I +A+ +F ++   KE+  +NAMI G
Sbjct: 431 QLGMQIH-QLVSKTVIPDVPLNNALITMYSRCGAIFEARTIFYEMKLQKEVISWNAMIGG 489

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           YA HG A EAL LFK ++   + P  ITF ++LNAC+HAGLV EG  +F  M SD+ V+P
Sbjct: 490 YASHGYATEALELFKLMRSFKVQPTYITFISVLNACAHAGLVEEGRRIFESMVSDYGVEP 549

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHL 698
            +EHF  +V+++ R G L+EAL +I +M  +PD  + G+LL      N  E+A   +E L
Sbjct: 550 RVEHFASLVDIVGRQGQLEEALDLINSMTIEPDKAVWGALLGASRVHNNVEMARVAAEAL 609

Query: 699 LQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
           ++LEPD+   Y+ L N Y   G+W+  +++R +M+   ++K    SW+
Sbjct: 610 MKLEPDSSVPYILLYNMYVDVGQWDNAAEIRSMMERNNIKKEAAISWV 657


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  315 bits (807), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 202/661 (30%), Positives = 326/661 (49%), Gaps = 102/661 (15%)

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           R+G   + +  F       + P  FV   ++K  G       G   H YVLK+G     F
Sbjct: 77  RMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK-----SGNMFHAYVLKLGHIDDHF 131

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           + ++++DMY K G ++ AR +F+ M  R +  WNSMI G  ++G   EA+ +F  M    
Sbjct: 132 IRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMM---- 187

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
             P R  +T                                  +S++  Y+K+G LE A 
Sbjct: 188 --PARNIIT---------------------------------WTSMVTGYAKMGDLESAR 212

Query: 339 VVFSRMVERDIVTWNLLIASYVQ---------------------------------SGQS 365
             F  M ER +V+WN + ++Y Q                                 S   
Sbjct: 213 RYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIG 272

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           D  +A SI+ M      ID    V NS +         LL  +A  G    A  +F ++ 
Sbjct: 273 DPTLADSILRM------IDQKHIVLNSFVK------TALLDMHAKFGNLEIARNIFDEL- 319

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
             G   N ++WN +I  + R G+++ A+++F  M     + ++++W ++I+G  QN    
Sbjct: 320 --GSQRNAVTWNIMISAYTRVGKLSLARELFDNMP----KRDVVSWNSMIAGYAQNGESA 373

Query: 486 EAILFFQEMLE-TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
            +I  F+EM+    I+P   TI   LSAC  + +L+    +   +   ++ L      SL
Sbjct: 374 MSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSL 433

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           + MY+KCG++  A R+F    ++++  +N +ISG+A +G   EA+ L   ++++GI+PD 
Sbjct: 434 IFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDH 493

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
           +T+  +L ACSHAGL+NEG  +F  + +     P+++H+ C+V+LL R G LDEA  +I 
Sbjct: 494 VTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKMLIQ 548

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
           +MP  P A + GSLL+         L E  +  L +LEP N GNYV LSN YA+ GRW +
Sbjct: 549 SMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWED 608

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSK 784
           V +VR++MK+ GL+K+ G SW++   ++H F   DRSH ++++IY  LA L   ++ V  
Sbjct: 609 VKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGF 668

Query: 785 V 785
           V
Sbjct: 669 V 669



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 147/593 (24%), Positives = 254/593 (42%), Gaps = 141/593 (23%)

Query: 42  SLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQI 101
           S+Y       S +    Q+   V L       N +  P +Y  L+     K    +G   
Sbjct: 66  SVYSCMLKYYSRMGAHNQV---VSLFKCTHSLNLRPQPFVYIYLI-----KLAGKSGNMF 117

Query: 102 HARILKNG---DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           HA +LK G   D F RN  ++      YAK   +D+A  LF ++  + +  W ++I    
Sbjct: 118 HAYVLKLGHIDDHFIRNAILD-----MYAKNGQVDLARNLFEQMAERTLADWNSMISGCW 172

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           + G   +A++ F                N++ A   + W                     
Sbjct: 173 KSGNETEAVVLF----------------NMMPARNIITW--------------------- 195

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
             +S++  Y K GDLE AR+ FD M  R+VV+WN+M   Y Q    +EA+ +F++M  EG
Sbjct: 196 --TSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEG 253

Query: 279 VEPTRVS-VTSILSASANLDA------LDEGKQAHAVAVINGMELDNVLGSSIINFYSKV 331
           + P   + V +I S S+  D       L    Q H V       L++ + +++++ ++K 
Sbjct: 254 ITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIV-------LNSFVKTALLDMHAKF 306

Query: 332 GLLEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVF 390
           G LE A  +F  +  +R+ VTWN++I++Y + G                  ++  A+++F
Sbjct: 307 GNLEIARNIFDELGSQRNAVTWNIMISAYTRVG------------------KLSLARELF 348

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-------------------------- 424
           +++  RDVV WN+++A YA  G S  +  LF +M                          
Sbjct: 349 DNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGAL 408

Query: 425 ----------QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
                     + + I   I  +NS+I  + + G + +A  +F   Q++G + +++++ TL
Sbjct: 409 KLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIF---QTMGTR-DVVSFNTL 464

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG----RAIHGYLI 530
           ISG   N  G EAI     M E GI+P   T    L+AC+    L  G    ++I    +
Sbjct: 465 ISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTV 524

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMH 582
            H  C        +VD+  + G + +AK +    P K    VY ++++   +H
Sbjct: 525 DHYAC--------MVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIH 569



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 21/230 (9%)

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ----AKRVFDISPSKEL 569
           + ++++R  R  HG+L+ + L      V+ L+     C  +H        +F  SPS + 
Sbjct: 9   SKISNIRQLRQFHGHLVHNSLHSHNYWVSLLL---INCTRLHAHPAYVDSIFTSSPSPDA 65

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
            VY+ M+  Y+  G   + ++LFK      + P    +  ++     +G +     L +G
Sbjct: 66  SVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVLKLG 125

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS-NET 688
              DH ++ +      ++++ ++ G +D A R +     +       S++S C KS NET
Sbjct: 126 HIDDHFIRNA------ILDMYAKNGQVDLA-RNLFEQMAERTLADWNSMISGCWKSGNET 178

Query: 689 ELAEYISEHLLQLEP-DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           E        L  + P  N   + ++   YA  G      +  D M E+ +
Sbjct: 179 EAVV-----LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSV 223


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  315 bits (807), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 201/662 (30%), Positives = 339/662 (51%), Gaps = 90/662 (13%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+  H +++K  F+ C+F+ ++ +++Y K G++  A+K+FD M  R+V+++N +I GY  
Sbjct: 28  GKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERSVISYNILISGYGG 87

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM------ 314
            G   +AI +F E  +  ++  + S   +LSA   +     GK  H +A++ G+      
Sbjct: 88  MGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFL 147

Query: 315 -------------------------ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE--- 346
                                    ELDNV  +S+I  Y++VG  E+   +  +M     
Sbjct: 148 TNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGL 207

Query: 347 ------------------RDIVTWNLLIASYV--QSGQSDVVVASSIVDMYAKCERIDNA 386
                              ++V++   +  Y   Q    D+VV ++++DMYAK   + +A
Sbjct: 208 RLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDA 267

Query: 387 KQVFNSIILRDVVLWNTLLAAY---ADLGR--SGEASRLFYQMQLEGISPNIISWNSVIL 441
            Q+F +   ++VV++N ++A +    D+ +  + EA +LF QMQ +GI P+  +++S+I 
Sbjct: 268 IQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIK 327

Query: 442 ------GFLRNGQM-------NEAKDMFL----------------QMQSLGVQPNL--IT 470
                  F    Q+       N   D F+                Q++     P L  ++
Sbjct: 328 ICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVS 387

Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
           WTT+I+G  QN     A+  F E+L +G KP    IT  LSAC DVA+ R+G  +HGY +
Sbjct: 388 WTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHGYAV 447

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           +  +     +  S + MYAK GN+  AK  F+   + ++  ++ MI   A HG A +A+ 
Sbjct: 448 KTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAIN 507

Query: 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650
           LF+ ++  GI P+ ITF  +L ACSH GLV EGL  +  M  D+ +K +++H  C+V+LL
Sbjct: 508 LFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLL 567

Query: 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710
           SR G L +A   IL         +  +LLS C    +    ++++E L++L+P    +YV
Sbjct: 568 SRAGRLLDAKNFILNSGFGDHPVMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYV 627

Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYA 770
            L N Y  +G     +++R++MK++G+RK PG SWI++G E+H FV  D SHP ++ IY 
Sbjct: 628 LLYNIYTDAGIDLPATKIRELMKDRGIRKEPGQSWIEVGNEVHSFVVGDISHPMSQIIYK 687

Query: 771 TL 772
            L
Sbjct: 688 KL 689



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 150/310 (48%), Gaps = 7/310 (2%)

Query: 33  LRESDNSYESLYKSY---FHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGC 89
            R S N    +Y +    F Q   + KE    EA+ L ++M+ +  +     +  +++ C
Sbjct: 271 FRTSPNQNVVMYNAMIAGFIQTEDIDKECAY-EALKLFSQMQRQGIKPSDFTFSSIIKIC 329

Query: 90  VYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFS 149
            +      G+QIHA I K+      +E++ + L+  Y+   + +   + F      ++ S
Sbjct: 330 NHIEAFEYGKQIHAHICKHN--IQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVS 387

Query: 150 WAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL 209
           W  +I    + G  E AL  F E+   G  PD F++  +L AC  +     G  VHGY +
Sbjct: 388 WTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHGYAV 447

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR 269
           K G      V +S I MY K G+L+ A+  F+ +   +VV+W+ MI    Q+G  ++AI 
Sbjct: 448 KTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAIN 507

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFY 328
           +F  M   G+ P +++   +L+A ++   ++EG +   ++     M+++    + I++  
Sbjct: 508 LFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLL 567

Query: 329 SKVGLLEDAE 338
           S+ G L DA+
Sbjct: 568 SRAGRLLDAK 577


>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 561

 Score =  315 bits (807), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 153/415 (36%), Positives = 252/415 (60%)

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           DV V +S+VDMY K + ++ A+ V +    ++V  WN+L++ Y+  G+ GEA +L  QM 
Sbjct: 52  DVYVCTSLVDMYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMV 111

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
            EGI+P++++WN ++ G+   G+++EA  +  +++S G+ PN+++WT LISG +QN    
Sbjct: 112 EEGITPDLVTWNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYM 171

Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545
           +A+  F +M    +KP++TTI   L AC   + L+ G  +H + ++        + T+L+
Sbjct: 172 DALKIFSQMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALI 231

Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
           DMY++ G +  A  VF+    K LP +N M+ GYA+H    E + L+  ++++ I PD+I
Sbjct: 232 DMYSEAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAI 291

Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
           TFT +L+AC ++GLV+EG + F  M  D+ + P++EH+ C+V+LL + G LDEA   I T
Sbjct: 292 TFTALLSACKNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIET 351

Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
           MP  PDA I G+LL++C      +LAE  +  L ++EP+N  NYV + N Y++  RW  V
Sbjct: 352 MPIKPDASIWGALLASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMMNLYSSLNRWVAV 411

Query: 726 SQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
            +++  M    ++  P  SW Q+ + +HVF    R HP+  EIY  L  L   +R
Sbjct: 412 ERLKHSMTVLAMKIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIR 466



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 182/374 (48%), Gaps = 35/374 (9%)

Query: 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226
           L  F  +   G  PD+  + + L+A   LG+   G+ +HGY+++   +  V+V +SL+DM
Sbjct: 3   LTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDM 62

Query: 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSV 286
           Y K   LE+A+ V      +NV AWNS+I GY   G   EA+++  +M  EG+ P  V+ 
Sbjct: 63  YVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTW 122

Query: 287 TSILSASANLDALDEGKQAHAVAVIN-----GMELDNVLGSSIINFYSKVGLLEDAEVVF 341
             ++S  +    +DE     A+ +IN     G+  + V  +++I+  S+     DA  +F
Sbjct: 123 NGLVSGYSMQGRIDE-----ALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIF 177

Query: 342 SRMVERDI-----VTWNLLIA----SYVQSGQ------------SDVVVASSIVDMYAKC 380
           S+M   ++        +LL A    S ++ G+             D+ VA++++DMY++ 
Sbjct: 178 SQMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEA 237

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
            ++  A  VFN I  + +  WN ++  YA      E   L+ +M+   I P+ I++ +++
Sbjct: 238 GKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALL 297

Query: 441 LGFLRNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
                +G ++E    F  MQ    + P +  +  ++  L ++   +EA  F + M    I
Sbjct: 298 SACKNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETM---PI 354

Query: 500 KPSTTTITCALSAC 513
           KP  +     L++C
Sbjct: 355 KPDASIWGALLASC 368



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 178/385 (46%), Gaps = 61/385 (15%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G++IH  I+++      + YV T LV  Y K D L+ A  +  R + KNV +W ++I   
Sbjct: 37  GKEIHGYIMRSN--LNYDVYVCTSLVDMYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGY 94

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
              G   +A+    +M E+G++PD             + W G    V GY ++       
Sbjct: 95  SFKGQFGEAVKLLNQMVEEGITPD------------LVTWNGL---VSGYSMQ------- 132

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGM----IARNVVAWNSMIVGYVQNGLNEEAIRVFYE 273
                        G ++EA  + + +    I  NVV+W ++I G  QN    +A+++F +
Sbjct: 133 -------------GRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQ 179

Query: 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333
           M  E V+P   ++ S+L A A    L +G++ H  ++  G   D  + +++I+ YS+ G 
Sbjct: 180 MQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGK 239

Query: 334 LEDAEVVFSRMVERDIVTWNLLIASY-VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
           L+ A  VF+++ E+ +  WN ++  Y + S   +V++      +Y K             
Sbjct: 240 LKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMI------LYDKMRERH-------- 285

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNE 451
            I  D + +  LL+A  + G   E  + F  MQ +  I P I  +  ++    ++G ++E
Sbjct: 286 -IRPDAITFTALLSACKNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDE 344

Query: 452 AKDMFLQMQSLGVQPNLITWTTLIS 476
           A      ++++ ++P+   W  L++
Sbjct: 345 ASHF---IETMPIKPDASIWGALLA 366



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 163/358 (45%), Gaps = 39/358 (10%)

Query: 130 DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVL 189
           +AL + +R+       NV SW A+I    +      AL  F +MQ + V P++  + ++L
Sbjct: 137 EALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQAENVKPNSTTICSLL 196

Query: 190 KACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVV 249
            AC     +  G  +H + +K+GF   ++VA++LIDMY + G L+ A  VF+ +  + + 
Sbjct: 197 CACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVAYNVFNKIQEKTLP 256

Query: 250 AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVA 309
            WN M++GY  +   EE + ++ +M    + P  ++ T++LSA  N   +DEG +     
Sbjct: 257 CWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWK----- 311

Query: 310 VINGMELD-NVLGS-----SIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIASYVQS 362
             + M+ D N++ +      +++   K G L++A      M ++ D   W  L+AS    
Sbjct: 312 YFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIWGALLASC--K 369

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
              ++ +A        K E  ++A  V              ++  Y+ L R     RL +
Sbjct: 370 IHKNIKLAEIAARKLFKMEPNNSANYVL-------------MMNLYSSLNRWVAVERLKH 416

Query: 423 QMQLEGIS-PNIISW---NSVILGFLRNGQMN--------EAKDMFLQMQSLGVQPNL 468
            M +  +  P + SW   N  I  F   G+ +        E   +  +++ LG  P+L
Sbjct: 417 SMTVLAMKIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKLGYAPDL 474



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 136/267 (50%), Gaps = 8/267 (2%)

Query: 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550
           F+ +   G KP + ++T AL A  ++   + G+ IHGY++R +L     + TSLVDMY K
Sbjct: 6   FRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDMYVK 65

Query: 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610
              + +A+ V   + +K +  +N++ISGY+  G   EA+ L   + ++GI PD +T+  +
Sbjct: 66  NDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTWNGL 125

Query: 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD- 669
           ++  S  G ++E L + +       + P++  +  +++  S+     +AL++   M  + 
Sbjct: 126 VSGYSMQGRIDEALTI-INRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQAEN 184

Query: 670 --PDAHIIGSLLSTCVKSNETELAEYISEHLLQLE-PDNPGNYVALSNAYAASGRWNEVS 726
             P++  I SLL  C   +  +  E +    ++L   D+     AL + Y+ +G+     
Sbjct: 185 VKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVAY 244

Query: 727 QVRDIMKEKGLRKNPGCSWIQIGEELH 753
            V + ++EK L   P  + + +G  +H
Sbjct: 245 NVFNKIQEKTL---PCWNCMMMGYAIH 268


>gi|296085462|emb|CBI29194.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  315 bits (807), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 213/762 (27%), Positives = 369/762 (48%), Gaps = 79/762 (10%)

Query: 63  AVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKL 122
           AV+L  E+      +       ++    +  ++  G+ +H    K G     + ++   L
Sbjct: 98  AVNLFVELMGEGVGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTG--LLSDSFLCNAL 155

Query: 123 VVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182
           +  YAKC  L  +  +F  +  +++ SW +++         +K+L  F +M       DN
Sbjct: 156 IDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADN 215

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF--VASSLIDMYGKCGDLEEARKVF 240
             L   + A   LG + FG+ +HG+ +K+G+         +SLI +Y +C D++ A  +F
Sbjct: 216 VSLTCAVSASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILF 275

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDAL 299
             M  +++V+WN+M+ G   N    EA  + +EM L G V+P  V+V  I+   A L  L
Sbjct: 276 KEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLL 335

Query: 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKV---------GLLEDAEVVFSRMVER-DI 349
            EG+  H + +   M LD  + +S+I+ YSK          G   +A+ +F ++++    
Sbjct: 336 REGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHNGHSREAQHLFRQLLQSYSQ 395

Query: 350 VTWNLLIA--------SYVQSGQS------------DVVVASSIVDMYAKCERIDNAKQV 389
            + + L+A         ++Q G+S            + +  +S++ MY  C  +     +
Sbjct: 396 CSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFSL 455

Query: 390 FNSI-ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ----------------------- 425
             ++    D+V WNT++A     G   EA + F  M+                       
Sbjct: 456 LQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNLE 515

Query: 426 -------LEGIS------PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472
                  L G++       +I   N++I  + R G++  A+ +F          NL +W 
Sbjct: 516 LLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIF----GFSCNRNLCSWN 571

Query: 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532
            +IS  +QN  G  A+  F  +     +P+  TI   LSACT +  LR+G+ IHG++IR 
Sbjct: 572 CMISAFSQNKDGRRALELFCHI---EFEPNEITIVGILSACTQLGVLRHGKQIHGHVIRS 628

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
            L   + +  +L DMY+ CG +  A ++F  SP + +  +N+MIS +  H    +A+ LF
Sbjct: 629 RLQGNSFVSAALEDMYSNCGRLDTAFQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELF 688

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
             +++ G  P   TF ++L+ACSH+GLVNEGL  +  M     V+   EH  C+V++L R
Sbjct: 689 HEMRECGTRPTKSTFISLLSACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGR 748

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G L EA   I  MP  P+  + G+LLS C    + ++   ++E L +LEP+N G Y++L
Sbjct: 749 AGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYISL 808

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHV 754
           SN Y A+GRW +  ++R I+++KGL+K    S I +G  L++
Sbjct: 809 SNMYVAAGRWKDAVELRRIIQDKGLKKPAAYSLIDVGMGLYL 850



 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 158/626 (25%), Positives = 287/626 (45%), Gaps = 94/626 (15%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVS 179
           T L+  Y++      +  LF  +  ++V  W A+I  +        A+  FVE+  +GV 
Sbjct: 52  TSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVG 111

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
            D+  L  V+ A   +G +  GR +HG   K G     F+ ++LIDMY KCG+L  +  V
Sbjct: 112 LDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSECV 171

Query: 240 FDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL 299
           F GM  R++++WNSM+ G   N   ++++  F +M     +   VS+T  +SASA L  L
Sbjct: 172 FGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASALLGEL 231

Query: 300 DEGKQAHAVAVINGME--LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
             G+  H   +  G +    N   +S+I+ YS+   ++ AE++F  M  +DIV+WN ++ 
Sbjct: 232 SFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLD 291

Query: 358 SY---------------------VQSGQSDVVV--------------------------- 369
                                  VQ     VV+                           
Sbjct: 292 GLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMG 351

Query: 370 -----ASSIVDMYAKCERIDNAKQVFNSIILRDVV-LWNTLLAAYADLGRS--------- 414
                 +S++DMY+KC+ +  A+   +S   R+   L+  LL +Y+    S         
Sbjct: 352 LDFSVTNSLIDMYSKCKDVKRAEHNGHS---REAQHLFRQLLQSYSQCSLSTLLAILPSC 408

Query: 415 --------GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466
                   GE+    +Q++L G + N ++ NS++L ++  G +      F  +Q++    
Sbjct: 409 DSSEFLQFGESIHC-WQLKL-GFANNPLAVNSLMLMYINCGDLVAC---FSLLQTVSAAA 463

Query: 467 NLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITCALSACTDVASLRNGRAI 525
           +++ W T+++G TQN    EA+  F  M +   +   +  +   +SAC ++  L  G ++
Sbjct: 464 DIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNLELLFAGGSL 523

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
           HG  ++  +     +  +L+ MY +CG I  A+ +F  S ++ L  +N MIS ++ +   
Sbjct: 524 HGLALKTLMESDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMISAFSQNKDG 583

Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
             AL LF +++    +P+ IT   IL+AC+  G++  G ++       H ++  ++    
Sbjct: 584 RRALELFCHIE---FEPNEITIVGILSACTQLGVLRHGKQI-----HGHVIRSRLQGNSF 635

Query: 646 VV----NLLSRCGNLDEALRVILTMP 667
           V     ++ S CG LD A ++  + P
Sbjct: 636 VSAALEDMYSNCGRLDTAFQIFQSSP 661



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 137/574 (23%), Positives = 260/574 (45%), Gaps = 85/574 (14%)

Query: 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264
           H    K+G    +  ++SL+  Y +  D   +  +FD ++ R+V+ WN+MI   V+N   
Sbjct: 36  HCLAFKMGALAHLPTSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCF 95

Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
             A+ +F E+  EGV     ++  ++SAS+++  L +G+  H ++   G+  D+ L +++
Sbjct: 96  GVAVNLFVELMGEGVGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNAL 155

Query: 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLI--ASY---------------VQSGQSD- 366
           I+ Y+K G L  +E VF  M  RDI++WN ++   +Y                 S Q+D 
Sbjct: 156 IDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADN 215

Query: 367 -----VVVASSI-------------------------------VDMYAKCERIDNAKQVF 390
                 V AS++                               + +Y++C  I  A+ +F
Sbjct: 216 VSLTCAVSASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILF 275

Query: 391 NSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG-ISPNIISWNSVI-----LGFL 444
             +  +D+V WN +L   A   R  EA  L ++MQL G + P+ ++   +I     L  L
Sbjct: 276 KEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLL 335

Query: 445 RNGQ----MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
           R G+    +   ++M L         ++ +    +     N    EA   F+++L++  +
Sbjct: 336 REGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHNGHSREAQHLFRQLLQSYSQ 395

Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
            S +T+   L +C     L+ G +IH + ++         V SL+ MY  CG++     +
Sbjct: 396 CSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFSL 455

Query: 561 FD-ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP----DSITFTNILNACS 615
              +S + ++  +N +++G   +G   EAL  F  ++Q   DP    DS+   N+++AC 
Sbjct: 456 LQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQ---DPDVCHDSVALFNVISACG 512

Query: 616 H-----AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670
           +     AG    GL L   M SD +V+ ++      + +  RCG ++ A R+I    C+ 
Sbjct: 513 NLELLFAGGSLHGLALKTLMESDIRVQNAL------ITMYGRCGEIENA-RIIFGFSCNR 565

Query: 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
           +      ++S   ++ +   A  +  H ++ EP+
Sbjct: 566 NLCSWNCMISAFSQNKDGRRALELFCH-IEFEPN 598


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  315 bits (807), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 202/661 (30%), Positives = 326/661 (49%), Gaps = 102/661 (15%)

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           R+G   + +  F       + P  FV   ++K  G       G   H YVLK+G     F
Sbjct: 77  RMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK-----SGNLFHAYVLKLGHIDDHF 131

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
           + ++++DMY K G ++ AR +F+ M  R +  WNSMI G  ++G   EA+ +F  M    
Sbjct: 132 IRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMM---- 187

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE 338
             P R  +T                                  +S++  Y+K+G LE A 
Sbjct: 188 --PARNIIT---------------------------------WTSMVTGYAKMGDLESAR 212

Query: 339 VVFSRMVERDIVTWNLLIASYVQ---------------------------------SGQS 365
             F  M ER +V+WN + ++Y Q                                 S   
Sbjct: 213 RYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIG 272

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           D  +A SI+ M      ID    V NS +         LL  +A  G    A  +F ++ 
Sbjct: 273 DPTLADSILRM------IDQKHIVLNSFVK------TALLDMHAKFGNLEIARNIFDEL- 319

Query: 426 LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485
             G   N ++WN +I  + R G+++ A+++F  M     + ++++W ++I+G  QN    
Sbjct: 320 --GSQRNAVTWNIMISAYTRVGKLSLARELFDNMP----KRDVVSWNSMIAGYAQNGESA 373

Query: 486 EAILFFQEMLE-TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
            +I  F+EM+    I+P   TI   LSAC  + +L+    +   +   ++ L      SL
Sbjct: 374 MSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSL 433

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           + MY+KCG++  A R+F    ++++  +N +ISG+A +G   EA+ L   ++++GI+PD 
Sbjct: 434 IFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDH 493

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
           +T+  +L ACSHAGL+NEG  +F  + +     P+++H+ C+V+LL R G LDEA  +I 
Sbjct: 494 VTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKMLIQ 548

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
           +MP  P A + GSLL+         L E  +  L +LEP N GNYV LSN YA+ GRW +
Sbjct: 549 SMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWED 608

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSK 784
           V +VR++MK+ GL+K+ G SW++   ++H F   DRSH ++++IY  LA L   ++ V  
Sbjct: 609 VKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGF 668

Query: 785 V 785
           V
Sbjct: 669 V 669



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 141/591 (23%), Positives = 256/591 (43%), Gaps = 137/591 (23%)

Query: 42  SLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQI 101
           S+Y       S +    Q+   V L       N +  P +Y  L+     K    +G   
Sbjct: 66  SVYSCMLKYYSRMGAHNQV---VSLFKCTHSLNLRPQPFVYIYLI-----KLAGKSGNLF 117

Query: 102 HARILKNG---DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
           HA +LK G   D F RN  ++      YAK   +D+A  LF ++  + +  W ++I    
Sbjct: 118 HAYVLKLGHIDDHFIRNAILD-----MYAKNGQVDLARNLFEQMAERTLADWNSMISGCW 172

Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
           + G   +A++ F                N++ A   + W                     
Sbjct: 173 KSGNETEAVVLF----------------NMMPARNIITW--------------------- 195

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
             +S++  Y K GDLE AR+ FD M  R+VV+WN+M   Y Q    +EA+ +F++M  EG
Sbjct: 196 --TSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEG 253

Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME-----LDNVLGSSIINFYSKVGL 333
           + P   +    +S+ +++     G    A +++  ++     L++ + +++++ ++K G 
Sbjct: 254 ITPDDTTWVVTISSCSSI-----GDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGN 308

Query: 334 LEDAEVVFSRM-VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
           LE A  +F  +  +R+ VTWN++I++Y + G                  ++  A+++F++
Sbjct: 309 LEIARNIFDELGSQRNAVTWNIMISAYTRVG------------------KLSLARELFDN 350

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQM---------------------------- 424
           +  RDVV WN+++A YA  G S  +  LF +M                            
Sbjct: 351 MPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL 410

Query: 425 --------QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476
                   + + I   I  +NS+I  + + G + +A  +F   Q++G + +++++ TLIS
Sbjct: 411 SYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIF---QTMGTR-DVVSFNTLIS 466

Query: 477 GLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG----RAIHGYLIRH 532
           G   N  G EAI     M E GI+P   T    L+AC+    L  G    ++I    + H
Sbjct: 467 GFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDH 526

Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMH 582
             C        +VD+  + G + +AK +    P K    VY ++++   +H
Sbjct: 527 YAC--------MVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIH 569



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 21/230 (9%)

Query: 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ----AKRVFDISPSKEL 569
           + ++++R  R  HG+L+ + L      V+ L+     C  +H        +F  SPS + 
Sbjct: 9   SKISNIRQLRQFHGHLVHNSLHSHNYWVSLLL---INCTRLHAHPAYVDSIFTSSPSPDA 65

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
            VY+ M+  Y+  G   + ++LFK      + P    +  ++     +G +     L +G
Sbjct: 66  SVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAYVLKLG 125

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS-NET 688
              DH ++ +      ++++ ++ G +D A R +     +       S++S C KS NET
Sbjct: 126 HIDDHFIRNA------ILDMYAKNGQVDLA-RNLFEQMAERTLADWNSMISGCWKSGNET 178

Query: 689 ELAEYISEHLLQLEP-DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
           E        L  + P  N   + ++   YA  G      +  D M E+ +
Sbjct: 179 EAVV-----LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSV 223


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  315 bits (807), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 195/579 (33%), Positives = 303/579 (52%), Gaps = 68/579 (11%)

Query: 221 SSLIDMYGKCGDLEEARKVFDGMI--------ARNVVAWNSMIVGYVQNGLNEEAIRVFY 272
           + LI +Y K GDL  AR +FD           A N    N+M+  Y   G + EAI ++ 
Sbjct: 62  ARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYI 121

Query: 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVG 332
            M   GV     +   +L   A+                   EL  V G           
Sbjct: 122 YMQRMGVGVNNFTYPFVLKVCAS-------------------ELGAVFG----------- 151

Query: 333 LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
                EVV  ++V                   SD+ V +++VDMYAKC  I +A +VF+ 
Sbjct: 152 -----EVVHGQVVRTGF--------------GSDLFVEAALVDMYAKCGEIGDAHEVFDR 192

Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI--LGFLRNGQM- 449
           +++RDVV W  ++  Y    R  +A  LF +MQ EG   + I+  SV   +G L +G+M 
Sbjct: 193 MLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMA 252

Query: 450 -NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
            + A+ +F +M+    + N I+W +++SG TQN    +A+  F +M  +   P+  T   
Sbjct: 253 ISRARLVFDRME----ERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALI 308

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP--S 566
            +SAC+ + S   GR +H ++I   + + T +  +++DMY KCG++  A  +F+      
Sbjct: 309 MVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGE 368

Query: 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626
           +++  +N +ISGY +HG   EAL LF  +Q +G++P+ ITFT+IL+ACSHAGL++EG + 
Sbjct: 369 RDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKC 428

Query: 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           F  M +   V+P M+H+ C+V++L R G L+EA R+I  +P  P   + G+LL  C    
Sbjct: 429 FADM-TKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHG 487

Query: 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746
            TEL E  + +L QLEP++ G YV +SN YAAS +W EV  VR  MK +GL+K    S I
Sbjct: 488 NTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVI 547

Query: 747 QIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           + G E+H F   D+S P   E+Y  +  L + +++V  V
Sbjct: 548 EFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYV 586



 Score =  189 bits (479), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 142/469 (30%), Positives = 234/469 (49%), Gaps = 46/469 (9%)

Query: 80  EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
             Y  LLQ C     + T + IH+ +   G F     +   +L++ Y+K   L  A  LF
Sbjct: 26  HFYDHLLQCCT---SLTTLKLIHSSLSTRG-FLLHTPHFLARLIILYSKLGDLHSARTLF 81

Query: 140 --------CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191
                      +  N F    ++      G S +A+  ++ MQ  GV  +NF  P VLK 
Sbjct: 82  DHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKV 141

Query: 192 CGA-LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA 250
           C + LG V FG  VHG V++ GF   +FV ++L+DMY KCG++ +A +VFD M+ R+VV 
Sbjct: 142 CASELGAV-FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVC 200

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA--HAV 308
           W +MI  Y Q     +A+ +F +M  EG     ++  S+ SA   +  L +G+ A   A 
Sbjct: 201 WTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASA---VGQLGDGRMAISRAR 257

Query: 309 AVINGMELDNVLG-SSIINFYSKVGLLEDAEVVFSRM----VERDIVTWNLLIAS----- 358
            V + ME  N +  +S+++ Y++ G   DA  +F++M     + + VT  +++++     
Sbjct: 258 LVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLG 317

Query: 359 ----------YVQSGQSDV--VVASSIVDMYAKCERIDNAKQVFNSIIL--RDVVLWNTL 404
                     +V S + D+   + ++I+DMY KC  +D A ++FN+  L  RDV  WN L
Sbjct: 318 SKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVL 377

Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
           ++ Y   G   EA  LF +MQ+EG+ PN I++ S++      G ++E +  F  M  L V
Sbjct: 378 ISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSV 437

Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           +P +  +  ++  L +    NEA   F+ + +   +PS       L AC
Sbjct: 438 RPEMKHYACMVDMLGRAGFLNEA---FRLIKKIPSRPSDEVWGALLLAC 483



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   +S  ++  +  +A+ L  +M+       P     ++  C Y    + G+++H  +
Sbjct: 270 SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFV 329

Query: 106 LKNG---DFFARNEYVETKLVVFYAKCDALDVASRLF--CRLRVKNVFSWAAIIGLNCRV 160
           + +    D   RN  ++      Y KC  LD A  +F  C L  ++V SW  +I      
Sbjct: 330 ISSKMDIDTTLRNAIMD-----MYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVH 384

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           G  ++AL  F  MQ +GV P++    ++L AC   G +  GR     + K+     +   
Sbjct: 385 GHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHY 444

Query: 221 SSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNGLNE 265
           + ++DM G+ G L EA ++   + +R +   W ++++    +G  E
Sbjct: 445 ACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTE 490



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 27/173 (15%)

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTP-IVTSLVDMYAKCGNIHQAKRVFDI----- 563
           L  CT + +L+    IH  L      L TP  +  L+ +Y+K G++H A+ +FD      
Sbjct: 32  LQCCTSLTTLK---LIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHH 88

Query: 564 -----SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA- 617
                +P+  L   N M+  YA  G + EA+ L+  +Q+ G+  ++ T+  +L  C+   
Sbjct: 89  HGHTQAPNSFLC--NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASEL 146

Query: 618 ----GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
               G V  G  +  G  SD  V+ ++      V++ ++CG + +A  V   M
Sbjct: 147 GAVFGEVVHGQVVRTGFGSDLFVEAAL------VDMYAKCGEIGDAHEVFDRM 193


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  315 bits (807), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 171/522 (32%), Positives = 290/522 (55%), Gaps = 25/522 (4%)

Query: 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310
           WN++I  +        A+ +F  M   GV   + S++ +L A + L  + EG Q H    
Sbjct: 93  WNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIHGFLK 152

Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD---- 366
             G+  D  L + +I  Y K G L  A  +F RM +RD V++N +I  YV+ G ++    
Sbjct: 153 KTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARE 212

Query: 367 -----------VVVASSIVDMYAKC-ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
                      ++  +S++  YA+  + +D A ++F+ +  +D++ WN+++  Y   GR 
Sbjct: 213 LFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHGRI 272

Query: 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474
            +A  LF  M       ++++W+++I G+ + G +++AK +F QM       +++++ ++
Sbjct: 273 EDAKYLFDVMPRR----DVVTWSTMIDGYAKLGFVHQAKTLFDQMP----HRDVVSYNSM 324

Query: 475 ISGLTQNSCGNEAILFFQEM-LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
           I+G  QN    EA+  F +M  E+ + P  TT+   LSA   +  L     +H Y++   
Sbjct: 325 IAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQ 384

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
             L   +  +L+DMY+KCG+I  A  VF    +K +  +NAMI G A+HGL   A  +  
Sbjct: 385 FFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLL 444

Query: 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC 653
            ++++ I PD ITF  +LNACSH+GLV EGL  F  M   H+++P ++H+GC+V++LSR 
Sbjct: 445 QIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRS 504

Query: 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713
           G+++ A  +I  MP +P+  I  + L+ C    E E  E +++HL+     NP +YV LS
Sbjct: 505 GSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIWEAGYNPSSYVLLS 564

Query: 714 NAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           N YA+ G+W +V ++R IMKE+ + K PGCSWI++   +H F
Sbjct: 565 NLYASFGKWKDVRRIRTIMKERKIEKVPGCSWIELDGRVHEF 606



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 151/536 (28%), Positives = 247/536 (46%), Gaps = 78/536 (14%)

Query: 77  IGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYA---KCDALD 133
           I P I  +LL  C    D+    +IHAR++ NG  F +N  + T++V+ +A   +   ++
Sbjct: 14  ISPTI--KLLGSCKNSEDV---NKIHARLVTNG--FIKNPNLTTRIVLAFAASRRPYXVE 66

Query: 134 VASRLFCRLRVK----------NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF 183
            A  +F    ++          + + W A+I  +       +AL+ F  M E+GVS D F
Sbjct: 67  FARFVFHEYXIRSFSPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKF 126

Query: 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
            L  VLKAC  LG V  G  +HG++ K G    +F+ + LI +Y KCG L  AR++FD M
Sbjct: 127 SLSLVLKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRM 186

Query: 244 IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL-DALDEG 302
             R+ V++NSMI GYV+ G  E A  +F  M  E      +S  S++S  A   D +D  
Sbjct: 187 PQRDSVSYNSMIDGYVKCGSTESARELFDLMPEE--MKNLISWNSMISGYAQTSDGVDIA 244

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
            +  +       + D +  +S+I+ Y K G +EDA+ +F  M  RD+VTW          
Sbjct: 245 SKLFSEMP----DKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTW---------- 290

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422
                   S+++D YAK   +  AK +F+ +  RDVV +N+++A Y     + EA  +F 
Sbjct: 291 --------STMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEALEIFS 342

Query: 423 QMQLEG-ISPNIISWNSVILGFLRNGQMNEAKDMFLQM--------QSLGV--------- 464
            M+ E  +SP+  +   V+    + G++++A DM L +          LGV         
Sbjct: 343 DMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKC 402

Query: 465 --------------QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510
                           ++  W  +I GL  +  G  A     ++    IKP   T    L
Sbjct: 403 GSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGLL 462

Query: 511 SACTDVASLRNGRAIHGYLIR-HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565
           +AC+    ++ G      + R H +         +VD+ ++ G+I  AK + +  P
Sbjct: 463 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMP 518



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 130/277 (46%), Gaps = 19/277 (6%)

Query: 95  MYTGQQIHARILKNGDFF----ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSW 150
           M  G   H RI      F     R+    + ++  YAK   +  A  LF ++  ++V S+
Sbjct: 262 MIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSY 321

Query: 151 AAIIGLNCRVGLSEKALIGFVEMQ-EDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVL 209
            ++I    +   + +AL  F +M+ E  +SPD   L  VL A   LG +     +H Y++
Sbjct: 322 NSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIV 381

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIR 269
           +  F     +  +LIDMY KCG ++ A  VF G+  +++  WN+MI G   +GL E A  
Sbjct: 382 EKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFD 441

Query: 270 VFYEMTLEGVEPTRVSVTSILSASANLDALDEG-------KQAHAVAVINGMELDNVLGS 322
           +  ++    ++P  ++   +L+A ++   + EG       ++ H +       L +    
Sbjct: 442 MLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEP----RLQHY--G 495

Query: 323 SIINFYSKVGLLEDAEVVFSRM-VERDIVTWNLLIAS 358
            +++  S+ G +E A+ +   M +E + V W   +A+
Sbjct: 496 CMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAA 532



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 97/451 (21%), Positives = 185/451 (41%), Gaps = 98/451 (21%)

Query: 369 VASSIVDMYAKCER---IDNAKQVFNSIILR----------DVVLWNTLLAAYADLGRSG 415
           + + IV  +A   R   ++ A+ VF+   +R          D  LWN ++ +++      
Sbjct: 48  LTTRIVLAFAASRRPYXVEFARFVFHEYXIRSFSPGGGDXEDXYLWNAVIKSHSHGTDPR 107

Query: 416 EASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQMNEA--------KDMFLQMQSL 462
            A  LF  M   G+S +  S + V+     LG ++ G              D+FLQ   +
Sbjct: 108 RALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLI 167

Query: 463 GV---------------------------------------------------QPNLITW 471
           G+                                                     NLI+W
Sbjct: 168 GLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKNLISW 227

Query: 472 TTLISGLTQNSCGNE-AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530
            ++ISG  Q S G + A   F EM +  +    + I   +        + + + +   + 
Sbjct: 228 NSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKH----GRIEDAKYLFDVMP 283

Query: 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALA 590
           R D+       ++++D YAK G +HQAK +FD  P +++  YN+MI+GY  +   +EAL 
Sbjct: 284 RRDVV----TWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEALE 339

Query: 591 LFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
           +F +++++  + PD  T   +L+A +  G +++ +++ + +  + Q     +    ++++
Sbjct: 340 IFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIV-EKQFFLGGKLGVALIDM 398

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE-----PD 704
            S+CG++  A+ V   +      H    +    +      L E   + LLQ+E     PD
Sbjct: 399 YSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHG----LGESAFDMLLQIERRSIKPD 454

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735
           +   +V L NA + SG   E     ++M+ K
Sbjct: 455 DI-TFVGLLNACSHSGLVKEGLLCFELMRRK 484


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  315 bits (807), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 203/683 (29%), Positives = 335/683 (49%), Gaps = 113/683 (16%)

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD----LEEARKVFDGMIA--RNVVAWNSM 254
           G A+HG+ LK G      V++SLI  Y  C      L  A  VF  + A  R+V +WNS+
Sbjct: 33  GDALHGWALKSGAASHTPVSNSLITFY--CSPPRPLLGAAFAVFADIPAGLRDVASWNSL 90

Query: 255 IVGYVQNGLNEE----AIRVFYEM--TLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308
           +     N L+      A+  F  M  + + V PT  S  ++ +A+A + +   G  AHA 
Sbjct: 91  L-----NPLSRHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAF 145

Query: 309 A--VINGMELDNV-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS 365
           A  + +    +NV + ++++N Y K+G + DA  VF +M  R+ V+W  +++ Y     S
Sbjct: 146 ACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCS 205

Query: 366 D-----------------------------------------------------VVVASS 372
           +                                                     V V +S
Sbjct: 206 EEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENS 265

Query: 373 IVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432
           +V MYAK E +D A  VF S   R+ + W+ ++  YA  G +  A+ +F QM   G SP 
Sbjct: 266 LVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPT 325

Query: 433 IISWNSVI---------------------LGFLRN--------------GQMNEAKDMFL 457
             ++  ++                     LGF R               G   +AKD F 
Sbjct: 326 EFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFH 385

Query: 458 QMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517
           Q+  +    +++ WT +I+G  QN    EA++ +  M + G+ PS  T+T  L AC  +A
Sbjct: 386 QLYDV---DDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLA 442

Query: 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMIS 577
           +L  G+ +H  +++    L   + T+L  MY+KCGN+  +  VF   P +++  +N++IS
Sbjct: 443 ALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIIS 502

Query: 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637
           G++ HG   +AL LF+ ++ +GI PD ITF N+L ACSH GLV+ G   F  M  D+ + 
Sbjct: 503 GFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYFRAMSKDYGLI 562

Query: 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697
           P ++H+ C+V++LSR G L EA   I ++  D    +   +L  C    + ++  Y  E 
Sbjct: 563 PKLDHYACIVDILSRAGQLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQ 622

Query: 698 LLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVA 757
           L++L  ++   Y+ LSN YAA  +WN+V +VR +M+ +G+ K+PGCSW+++  +++VFV 
Sbjct: 623 LMELGTEDSSAYILLSNIYAAQRKWNDVERVRHLMRLRGVSKDPGCSWVELNNQVNVFVV 682

Query: 758 CDRSHPKTEEIYATLALLGMHVR 780
            ++ HP+ E+I   L  L  H++
Sbjct: 683 GEQQHPEAEKINVELIRLAKHMK 705



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 15/166 (9%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           +L+ C     +  G+Q+HA+ILK G  F     V T L   Y+KC  L+ +  +F R+  
Sbjct: 434 VLRACACLAALEPGKQLHAQILKCG--FGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPD 491

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG--- 201
           +++ SW +II    + G    AL  F EM+ +G++PD+    NVL AC  +G V  G   
Sbjct: 492 RDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFY 551

Query: 202 -RAV---HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGM 243
            RA+   +G + K+    C+      +D+  + G L+EA+   + +
Sbjct: 552 FRAMSKDYGLIPKLDHYACI------VDILSRAGQLKEAKDFIESI 591


>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
          Length = 763

 Score =  315 bits (806), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 199/676 (29%), Positives = 341/676 (50%), Gaps = 42/676 (6%)

Query: 25  LSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRN-FQIGPEIYG 83
           + +T L+KLR   +S E         I++L K+K   EA+     ++ +  F +    Y 
Sbjct: 16  VKETVLSKLRAEQSSNE--------YITTLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYA 67

Query: 84  ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR 143
            L+  C Y R +  G++IH  +LK+      +  ++  ++  Y KC +L  A ++F  + 
Sbjct: 68  YLISACSYLRSLEHGRKIHDHMLKSKSH--PDLTLQNHILNMYGKCGSLKDAQKVFDAMP 125

Query: 144 VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA 203
            +NV SW ++I    + G    AL  + +M + GV PD F   +++KAC +LG +G GR 
Sbjct: 126 ERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQ 185

Query: 204 VHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGL 263
           +H +VLK  F   +   ++LI MY K   + +A  VF  M  R++++W SMI G+ Q G 
Sbjct: 186 LHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGY 245

Query: 264 NEEAIRVFYEMTLEGVE-PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322
             EA+  F EM  +GV  P      S+ SA ++L   + G+Q H +++  G+  D   G 
Sbjct: 246 ELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGC 305

Query: 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCER 382
           S+ + Y+K GLL  A VVF ++   D+V WN +IA +   G +               E 
Sbjct: 306 SLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAK--------------EA 351

Query: 383 IDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE------GISPNIISW 436
           I    Q+ +  ++ D +   +LL A          S L+  MQ+       G+  ++   
Sbjct: 352 IAFFSQMRHQGLIPDEITVRSLLCA------CTSPSELYQGMQVHGYINKMGLDLDVPVC 405

Query: 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
           N+++  + +  ++ +A   F +M+      +L++W  +++    +    E     + M  
Sbjct: 406 NTLLTMYAKCSELRDAIFFFEEMR---CNADLVSWNAILTACMHHDQAEEVFGLLKLMCI 462

Query: 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556
           +  +P   T+T  L A  +  S+  G  +H Y ++  L     +   L+D+YAKCG++  
Sbjct: 463 SQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDISVTNGLIDLYAKCGSLKT 522

Query: 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
           A+++FD   + ++  ++++I GYA  G   EAL LFK +++  + P+ +TF  +L ACSH
Sbjct: 523 ARKIFDSVINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSH 582

Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
            GLV EG +L+  M  +  + P+ EH  C+V+LL+R G L+EA   I  M  DPD  +  
Sbjct: 583 VGLVEEGWQLYGTMEKEFGIVPTREHCSCMVDLLARAGCLNEAEAFIHQMAFDPDIVVWK 642

Query: 677 SLLSTCVKSNETELAE 692
           +LL+ C KS    LA 
Sbjct: 643 TLLAAC-KSVHQALAR 657



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 192/391 (49%), Gaps = 43/391 (10%)

Query: 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQ 425
           D+ + + I++MY KC  + +A++VF+++  R+VV W +++A Y+  G+ G A   ++QM 
Sbjct: 97  DLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQML 156

Query: 426 LEGISPN-----------------------------------IISWNSVILGFLRNGQMN 450
             G+ P+                                   II+ N++I  + ++  + 
Sbjct: 157 QSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVII 216

Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK-PSTTTITCA 509
           +A D+F +M +     +LI+W ++I+G +Q     EA+ +F+EML  G+  P+       
Sbjct: 217 DALDVFSRMAT----RDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSV 272

Query: 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
            SAC+ +     GR +HG  I+  L        SL DMYAKCG +  A+ VF      +L
Sbjct: 273 FSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDL 332

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629
             +NA+I+G+A  G A EA+A F  ++ +G+ PD IT  ++L AC+    + +G+++  G
Sbjct: 333 VAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVH-G 391

Query: 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETE 689
             +   +   +     ++ + ++C  L +A+     M C+ D     ++L+ C+  ++ E
Sbjct: 392 YINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMHHDQAE 451

Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
             E      L     +  +Y+ L+N   AS 
Sbjct: 452 --EVFGLLKLMCISQHRPDYITLTNVLGASA 480


>gi|356534091|ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic-like [Glycine max]
          Length = 903

 Score =  315 bits (806), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 201/752 (26%), Positives = 354/752 (47%), Gaps = 95/752 (12%)

Query: 98  GQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLN 157
           G  +H+ I+K G     + Y+   L+  YAKC  +  A  LF  +  ++V SW  ++  +
Sbjct: 35  GACVHSPIIKVG--LQHDLYLSNNLLCLYAKCFGVGQARHLFDEMPHRDVVSWTTLLSAH 92

Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
            R     +AL  F  M   G  P+ F L + L++C ALG   FG  +H  V+K+G +   
Sbjct: 93  TRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHASVVKLGLELNH 152

Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
            + ++L+D+Y KC    E  K+   +   +VV+W +MI   V+     EA++++ +M   
Sbjct: 153 VLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEA 212

Query: 278 GVEPTRVSVTSILSASANLD-ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
           G+ P   +   +L   + L      GK  H+  +  G+E++ +L ++II  Y+K   +ED
Sbjct: 213 GIYPNEFTFVKLLGMPSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRRMED 272

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQ-------------------------------- 364
           A  V  +  + D+  W  +I+ +VQ+ Q                                
Sbjct: 273 AIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSS 332

Query: 365 --------------------SDVVVASSIVDMYAKCERID-NAKQVFNSIILRDVVLWNT 403
                                D+ V +++VDMY KC     N  + F  I L +V+ W +
Sbjct: 333 VLSLELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTS 392

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISW--------------------------- 436
           L+A +A+ G   E+ +LF +MQ  G+ PN  +                            
Sbjct: 393 LIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYIIKTQ 452

Query: 437 --------NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
                   N+++  +   G  +EA  +   M       ++IT+TTL + L Q      A+
Sbjct: 453 VDIDMAVGNALVDAYAGGGMADEAWSVIGMMN----HRDIITYTTLAARLNQQGDHEMAL 508

Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
                M    +K    ++   +SA   +  +  G+ +H Y  +        +  SLV  Y
Sbjct: 509 RVITHMCNDEVKMDEFSLASFISAAAGLGIMETGKQLHCYSFKSGFERCNSVSNSLVHSY 568

Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
           +KCG++  A RVF      +   +N +ISG A +GL  +AL+ F +++  G+ PDS+TF 
Sbjct: 569 SKCGSMRDAYRVFKDITEPDRVSWNGLISGLASNGLISDALSAFDDMRLAGVKPDSVTFL 628

Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
           +++ ACS   L+N+GL+ F  M   + + P ++H+ C+V+LL R G L+EA+ VI TMP 
Sbjct: 629 SLIFACSQGSLLNQGLDYFYSMEKTYHITPKLDHYVCLVDLLGRGGRLEEAMGVIETMPF 688

Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
            PD+ I  +LL+ C       L E ++   L+L+P +P  Y+ L++ Y  +G  +   + 
Sbjct: 689 KPDSVIYKTLLNACNLHGNVPLGEDMARRCLELDPCDPAIYLLLASLYDNAGLPDFGDKT 748

Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760
           R +M+E+GLR++P   W+++  ++++F A ++
Sbjct: 749 RKLMRERGLRRSPRQCWMEVKSKIYLFSAREK 780



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 131/504 (25%), Positives = 219/504 (43%), Gaps = 57/504 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS   +  Q+REAV+ L +M+          Y  LL        +  G+Q H+R++  G 
Sbjct: 292 ISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVG- 350

Query: 111 FFARNEYVETKLVVFYAKCDALDV-ASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
               + YV   LV  Y KC        + F  + + NV SW ++I      G  E+++  
Sbjct: 351 -LEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQL 409

Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
           F EMQ  GV P++F L  +L AC  +  +   + +HGY++K   D  + V ++L+D Y  
Sbjct: 410 FAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAG 469

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
            G  +EA  V   M  R+++ + ++     Q G +E A+RV   M  + V+    S+ S 
Sbjct: 470 GGMADEAWSVIGMMNHRDIITYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFSLASF 529

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
           +SA+A L  ++ GKQ H  +  +G E  N + +S+++ YSK G + DA  VF  + E D 
Sbjct: 530 ISAAAGLGIMETGKQLHCYSFKSGFERCNSVSNSLVHSYSKCGSMRDAYRVFKDITEPDR 589

Query: 350 VTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYA 409
           V+WN LI+    +G                                    L +  L+A+ 
Sbjct: 590 VSWNGLISGLASNG------------------------------------LISDALSAFD 613

Query: 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SLGVQPNL 468
           D             M+L G+ P+ +++ S+I    +   +N+  D F  M+ +  + P L
Sbjct: 614 D-------------MRLAGVKPDSVTFLSLIFACSQGSLLNQGLDYFYSMEKTYHITPKL 660

Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
             +  L+  L +     EA+   + M     KP +      L+AC    ++  G  +   
Sbjct: 661 DHYVCLVDLLGRGGRLEEAMGVIETM---PFKPDSVIYKTLLNACNLHGNVPLGEDMARR 717

Query: 529 LIRHDLCLPTPIVTSLVDMYAKCG 552
            +  D C P  I   L  +Y   G
Sbjct: 718 CLELDPCDPA-IYLLLASLYDNAG 740



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 195/473 (41%), Gaps = 89/473 (18%)

Query: 281 PTRVSVTSILSAS-ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
           P R   T +   S  N   L EG   H+  +  G++ D  L ++++  Y+K   +  A  
Sbjct: 13  PCRFRETCLQVLSLCNSQTLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARH 72

Query: 340 VFSRMVERDIVTWNLLIASYVQ----------------SGQS------------------ 365
           +F  M  RD+V+W  L++++ +                SGQ                   
Sbjct: 73  LFDEMPHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGE 132

Query: 366 ------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
                             + V+ +++VD+Y KC+      ++   +   DVV W T++++
Sbjct: 133 FEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISS 192

Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVI--LGFLRNGQMNEAKDMFLQMQSLGVQ 465
             +  +  EA +L+ +M   GI PN  ++  ++    FL  G+    K +  Q+ + GV+
Sbjct: 193 LVETSKWSEALQLYVKMIEAGIYPNEFTFVKLLGMPSFLGLGK-GYGKVLHSQLITFGVE 251

Query: 466 PNLI-------------------------------TWTTLISGLTQNSCGNEAILFFQEM 494
            NL+                                WT++ISG  QNS   EA+    +M
Sbjct: 252 MNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDM 311

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN- 553
             +GI P+  T    L+A + V SL  G   H  +I   L     +  +LVDMY KC + 
Sbjct: 312 ELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHT 371

Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
                + F       +  + ++I+G+A HG   E++ LF  +Q  G+ P+S T + IL A
Sbjct: 372 TTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGA 431

Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
           CS    + +  +L  G     QV   M     +V+  +  G  DEA  VI  M
Sbjct: 432 CSKMKSIIQTKKLH-GYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSVIGMM 483


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  315 bits (806), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 176/558 (31%), Positives = 291/558 (52%), Gaps = 64/558 (11%)

Query: 205 HGYVLKVGFDGCVFVASSLI---DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
           H ++LK G     F AS LI           +  A  +F  +   N   WN++I  Y  +
Sbjct: 27  HAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANS 86

Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
              E A+ +F++M    V P + + T  L +  +   ++EG+Q H      G  L   LG
Sbjct: 87  PTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIH------GHVLKTGLG 140

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381
                                                       D+ + ++++ +YA C 
Sbjct: 141 D-------------------------------------------DLFIQNTLIHLYASCG 157

Query: 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441
            I++A+ + + ++ RDVV WN LL+AYA+ G    A  LF +M       N+ SWN +I 
Sbjct: 158 CIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEM----TERNVESWNFMIS 213

Query: 442 GFLRNGQMNEAKDMFLQMQSLGVQP--NLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
           G++  G + EA+ +F      G  P  N+++W  +I+G +     +E ++ F++M   G+
Sbjct: 214 GYVGVGLLEEARRVF------GETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGV 267

Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
           KP   T+   LSAC  V +L  G  +H Y+ ++ + +   + T+LVDMY+KCG+I +A  
Sbjct: 268 KPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALE 327

Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
           VF+    K++  +N++ISG + HG    AL +F  +  +G  P+ +TF  +L+ACS AGL
Sbjct: 328 VFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGL 387

Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
           ++EG E+F  M   H ++P++EH+GC+V+LL R G L+EA  ++  MP    + +  SLL
Sbjct: 388 LDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLL 447

Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
             C      ELAE +++ LL+L P    ++V LSN YA+ GRW +V +VR  M+ +G+RK
Sbjct: 448 GACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRK 507

Query: 740 NPGCSWIQIGEELHVFVA 757
           +PGCS I++   ++ F+A
Sbjct: 508 DPGCSMIEVDGTVYEFLA 525



 Score =  185 bits (470), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 216/443 (48%), Gaps = 40/443 (9%)

Query: 99  QQIHARILKNGDFFARNEYVETKLVVFYA---KCDALDVASRLFCRLRVKNVFSWAAIIG 155
            Q HA ILK+G     + +  ++L+   +      A+  A  +F R+   N + W  II 
Sbjct: 24  HQAHAHILKSG--LIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIR 81

Query: 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDG 215
                   E AL  F +M    V PD +     LK+CG+   V  GR +HG+VLK G   
Sbjct: 82  AYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGD 141

Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275
            +F+ ++LI +Y  CG +E+AR + D M+ R+VV+WN+++  Y + GL E A  +F EMT
Sbjct: 142 DLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMT 201

Query: 276 LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG-SSIINFYSKVGLL 334
              VE    S   ++S    +  L+E ++     V     + NV+  +++I  YS  G  
Sbjct: 202 ERNVE----SWNFMISGYVGVGLLEEARR-----VFGETPVKNVVSWNAMITGYSHAGRF 252

Query: 335 EDAEVVFSRMVERDIVTWNLLIASYV--------------------QSGQS-DVVVASSI 373
            +  V+F  M    +   N  + S +                    ++G S D  VA+++
Sbjct: 253 SEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATAL 312

Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
           VDMY+KC  I+ A +VFNS + +D+  WN++++  +  G    A ++F +M +EG  PN 
Sbjct: 313 VDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNE 372

Query: 434 ISWNSVILGFLRNGQMNEAKDMF-LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
           +++  V+    R G ++E ++MF L +   G+QP +  +  ++  L +     EA    Q
Sbjct: 373 VTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQ 432

Query: 493 EMLETGIKPSTTTITCALSACTD 515
           +M +   K ++      L AC +
Sbjct: 433 KMPQ---KEASVVWESLLGACRN 452



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 172/337 (51%), Gaps = 25/337 (7%)

Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
           Y     L+ A R+F    VKNV SW A+I      G   + L+ F +MQ  GV PDN  L
Sbjct: 215 YVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTL 274

Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
            +VL AC  +G +  G  VH Y+ K G     FVA++L+DMY KCG +E+A +VF+  + 
Sbjct: 275 VSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLR 334

Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
           +++  WNS+I G   +G  + A+++F EM +EG +P  V+   +LSA +    LDEG++ 
Sbjct: 335 KDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREM 394

Query: 306 HAVAV-INGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI-VTWNLLIASYVQSG 363
             + V ++G++        +++   +VGLLE+AE +  +M +++  V W  L+ +    G
Sbjct: 395 FNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHG 454

Query: 364 QSDVV--VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
             ++   VA  ++++         + Q  +S +         L   YA +GR  +   + 
Sbjct: 455 NVELAERVAQKLLEL---------SPQESSSFV--------QLSNMYASMGRWKDVMEVR 497

Query: 422 YQMQLEGISPN----IISWNSVILGFLRNGQMNEAKD 454
            +M+ +G+  +    +I  +  +  FL    +   KD
Sbjct: 498 QKMRAQGVRKDPGCSMIEVDGTVYEFLAGEGLVSGKD 534



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 193/426 (45%), Gaps = 67/426 (15%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L+ C     +  G+QIH  +LK G     + +++  L+  YA C  ++ A  L  R+  +
Sbjct: 115 LKSCGSFSGVEEGRQIHGHVLKTG--LGDDLFIQNTLIHLYASCGCIEDARHLLDRMLER 172

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           +V SW A++      GL E A   F EM E  V   NF++          G+VG G    
Sbjct: 173 DVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMIS---------GYVGVGL--- 220

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
                                      LEEAR+VF     +NVV+WN+MI GY   G   
Sbjct: 221 ---------------------------LEEARRVFGETPVKNVVSWNAMITGYSHAGRFS 253

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325
           E + +F +M   GV+P   ++ S+LSA A++ AL +G+  HA    NG+ +D  + ++++
Sbjct: 254 EVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALV 313

Query: 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDN 385
           + YSK G +E A  VF+  + +DI TWN +I+     G                     +
Sbjct: 314 DMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSG------------------QH 355

Query: 386 AKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSVI 440
           A Q+F+ +++     + V +  +L+A +  G   E   +F  M  + GI P I  +  ++
Sbjct: 356 ALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMV 415

Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
               R G + EA+++   +Q +  +   + W +L+     +     A    Q++LE   +
Sbjct: 416 DLLGRVGLLEEAEEL---VQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQ 472

Query: 501 PSTTTI 506
            S++ +
Sbjct: 473 ESSSFV 478



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 103/233 (44%), Gaps = 16/233 (6%)

Query: 46  SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
           S+   I+  S   +  E + L  +M+    +        +L  C +   +  G+ +HA I
Sbjct: 238 SWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYI 297

Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
            KNG   + + +V T LV  Y+KC +++ A  +F     K++ +W +II      G  + 
Sbjct: 298 DKNG--ISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQH 355

Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA-------VHGYVLKVGFDGCVF 218
           AL  F EM  +G  P+      VL AC   G +  GR        VHG    +   GC  
Sbjct: 356 ALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGC-- 413

Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNV-VAWNSMIVGYVQNGLNEEAIRV 270
               ++D+ G+ G LEEA ++   M  +   V W S++     +G  E A RV
Sbjct: 414 ----MVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERV 462


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  315 bits (806), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 170/536 (31%), Positives = 278/536 (51%), Gaps = 58/536 (10%)

Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
           P+  + +++L     L ALDEG + HA    +G     V+ + I++ Y K   L +A+ +
Sbjct: 87  PSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRL 146

Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL 400
           F  M ERD+ +WN++I+ Y ++G                  R+  A+++F+ +  RD   
Sbjct: 147 FDEMAERDLCSWNIMISGYAKAG------------------RLQEARKLFDQMTERDNFS 188

Query: 401 WNTLLAAYADLGRSGEASRLFYQMQLE--------------------------------- 427
           W  + + Y    +  EA  LF  MQ                                   
Sbjct: 189 WTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHI 248

Query: 428 ---GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
              G+  + + W+++   + + G + EA+ +F +     V  ++++WT +I    +    
Sbjct: 249 LRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKT----VDRDVVSWTAMIDRYFKEGRR 304

Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
            E    F ++L++GI P+  T +  L+AC D A+   G+ +HGY+ R      +   ++L
Sbjct: 305 EEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTL 364

Query: 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
           V MY KCGNI  A+RVF+  P  +L  + ++ISGYA +G   EAL  F+ L + G  PD 
Sbjct: 365 VHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDH 424

Query: 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVIL 664
           ITF  +L+AC+HAGLV++GLE F  +   H +  + +H+ C+++LLSR G L EA  +I 
Sbjct: 425 ITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIID 484

Query: 665 TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
            MP +PD  +  SLL  C      +LA+  +E L ++EP+NP  Y  L+N YA +G W  
Sbjct: 485 KMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWGG 544

Query: 725 VSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
           V++VR +M  +G+ K PG SWI+I  E+HVF+  D SH K++EI+  L  L   ++
Sbjct: 545 VAEVRKVMDARGVVKKPGLSWIEIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRMK 600



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 217/458 (47%), Gaps = 52/458 (11%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG- 109
           I  L ++K++REA+ +L  +     +     Y  LLQ C+  R +  G ++HA    +G 
Sbjct: 65  IDILCEQKRLREAIQILDHVD----RPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGF 120

Query: 110 -----------DFFAR-NEYVETK----------------LVVFYAKCDALDVASRLFCR 141
                      D + + N  V  K                ++  YAK   L  A +LF +
Sbjct: 121 VPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQ 180

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWVGF 200
           +  ++ FSW A+     R    E+AL  F  MQ  +    + F + + L A  A+  +  
Sbjct: 181 MTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHL 240

Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
           G+ +HG++L++G D    V S+L DMYGKCG + EAR +FD  + R+VV+W +MI  Y +
Sbjct: 241 GKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFK 300

Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
            G  EE   +F ++   G+ P   + + +L+A A+  A + GKQ H      G +  +  
Sbjct: 301 EGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFA 360

Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
            S++++ Y+K G +++A  VF+ M   D+V+W  LI+ Y Q+GQ D              
Sbjct: 361 ASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPD-------------- 406

Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM-QLEGISPNIISWNSV 439
           E +   + +  S    D + +  +L+A    G   +    F  + +  G++     +  +
Sbjct: 407 EALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACL 466

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
           I    R+G++ EA+D+  +M    ++P+   W +L+ G
Sbjct: 467 IDLLSRSGRLQEAEDIIDKMP---IEPDKFLWASLLGG 501



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 4/138 (2%)

Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
           ++L+   +PS  T +  L  C  + +L  G  +H +           I   ++DMY KC 
Sbjct: 79  QILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCN 138

Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
           ++  AKR+FD    ++L  +N MISGYA  G   EA  LF  + ++    D+ ++T + +
Sbjct: 139 SLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTER----DNFSWTAMTS 194

Query: 613 ACSHAGLVNEGLELFVGM 630
                    E LELF  M
Sbjct: 195 GYVRHDQHEEALELFRAM 212


>gi|302816163|ref|XP_002989761.1| hypothetical protein SELMODRAFT_20442 [Selaginella moellendorffii]
 gi|300142538|gb|EFJ09238.1| hypothetical protein SELMODRAFT_20442 [Selaginella moellendorffii]
          Length = 749

 Score =  315 bits (806), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 217/757 (28%), Positives = 354/757 (46%), Gaps = 111/757 (14%)

Query: 85  LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144
           LL+ C    D+  G++IH R+L       ++ ++   ++  Y KC  L  A  +F  +  
Sbjct: 4   LLRSCGNSGDLSAGRRIHKRVLDLQRQHGQDVFLLNLVIDMYGKCGGLGEARAVFDAIEH 63

Query: 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEM----------------QEDGVS--------- 179
            NVFS+  +I      GL E+A   F  M                QE   S         
Sbjct: 64  PNVFSFNILIASYASAGLLEEAWKIFHAMPGRNVVSWNTMVSANAQEGDFSRAKIFLARI 123

Query: 180 -----PDNFVLPNVLKACGALGWVG----------------------------FGRAVH- 205
                PD      +L  C  LG V                              GRA H 
Sbjct: 124 PQHSLPDGITFVTILTGCSHLGLVSRGREFFRSIESAFGMKPGVEHYCCMVDVLGRAKHL 183

Query: 206 ----GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
                 + K G D    + + LI MYG+CG L +ARKVFD     N+ +WN M+  Y  N
Sbjct: 184 EEAEELIFKTGHDRETRLRNLLIQMYGECGSLIDARKVFDRTPDPNIFSWNIMLAAYAHN 243

Query: 262 GLNEEAIRVFYEMTLEG--VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNV 319
           G + EA+ +   M   G  V P RV+   +L A +NL AL EG+  HA  +++GME + V
Sbjct: 244 GHSNEALVLSQRMKDSGATVVPDRVTYVILLHACSNLGALREGRMIHASVIVSGMESNVV 303

Query: 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379
           + ++I+N Y K G + DA++VF +M  +D++ WN +I++Y  +G     +  S +D+YA+
Sbjct: 304 VATAIVNMYGKCGSMGDAKMVFDKMPAKDVICWNSMISAYALNG-----LGKSALDLYAR 358

Query: 380 ----CERID--------NAKQVFNSI---------ILRDVVLWNTLLAA-----YADLGR 413
               C R D        +A  V NS+         I    + WN ++A      Y   G 
Sbjct: 359 MRHSCVRPDAGTFVAALDACSVLNSLEDGKKIHAAISASKLEWNVMVATALVSMYGKCGC 418

Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
              +  +F  M++     N+ISW +++     NG+   A ++F +M+  G +   + W  
Sbjct: 419 LERSIAVFRAMEVR----NLISWTAMLGALAHNGRDAAALELFARMRDEGREA--LLWNA 472

Query: 474 LISGLTQNSCGNEAILFFQEML------ETGIKPSTTTITCALSACTDV--ASLRNGRAI 525
           LI+  T      EA+  + EM+         ++P   T    L AC  +  A+L  GR I
Sbjct: 473 LIAAYTARGHPREALRLYAEMILAERRGAPPVRPDRNTFAAVLEACGSIGTAALGEGRMI 532

Query: 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGL 584
           H   I         + ++L+ MY+KCG++  A  +F ++S  + + +   MI+ Y  HG 
Sbjct: 533 HTQAIARACDTDVIVASALIAMYSKCGSLGDAVAIFRELSRKRSVVLVTTMIAAYGHHGK 592

Query: 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG 644
              AL LF  + Q+G+ P+ ITF ++L++CS A  + E +  F  M  D  ++P  EH+ 
Sbjct: 593 LELALELFWEMAQRGLKPNRITFVSLLSSCSAANSLREAVFYFQIMIHDCDIQPGAEHYH 652

Query: 645 CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
            V++LL R G + +A  +I +MP  P      SLL+ C + ++ EL    ++ + ++EP 
Sbjct: 653 FVIDLLGRSGKVAQAEELINSMPFAPGCGAWMSLLAACERHSKVELGRRAADRVFEMEPK 712

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741
           N   Y+ L   Y A+G W+E+ Q++ +M+++GL++ P
Sbjct: 713 NALAYLMLGKIYVAAGMWDELLQLKKLMEDRGLKREP 749



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 161/639 (25%), Positives = 281/639 (43%), Gaps = 111/639 (17%)

Query: 185 LPNVLKACGALGWVGFGRAVHGYVLKV----GFDGCVFVASSLIDMYGKCGDLEEARKVF 240
           L N+L++CG  G +  GR +H  VL +    G D  VF+ + +IDMYGKCG L EAR VF
Sbjct: 1   LANLLRSCGNSGDLSAGRRIHKRVLDLQRQHGQD--VFLLNLVIDMYGKCGGLGEARAVF 58

Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE-------------------- 280
           D +   NV ++N +I  Y   GL EEA ++F+ M    V                     
Sbjct: 59  DAIEHPNVFSFNILIASYASAGLLEEAWKIFHAMPGRNVVSWNTMVSANAQEGDFSRAKI 118

Query: 281 ----------PTRVSVTSILSASANLDALDEGKQ-----AHAVAVINGME----LDNVLG 321
                     P  ++  +IL+  ++L  +  G++       A  +  G+E    + +VLG
Sbjct: 119 FLARIPQHSLPDGITFVTILTGCSHLGLVSRGREFFRSIESAFGMKPGVEHYCCMVDVLG 178

Query: 322 SS------------------------IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
            +                        +I  Y + G L DA  VF R  + +I +WN+++A
Sbjct: 179 RAKHLEEAEELIFKTGHDRETRLRNLLIQMYGECGSLIDARKVFDRTPDPNIFSWNIMLA 238

Query: 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEA 417
           +Y  +G S+  +  S        +R+ ++     + ++ D V +  LL A ++LG   E 
Sbjct: 239 AYAHNGHSNEALVLS--------QRMKDS----GATVVPDRVTYVILLHACSNLGALREG 286

Query: 418 SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
             +   + + G+  N++   +++  + + G M +AK +F +M +     ++I W ++IS 
Sbjct: 287 RMIHASVIVSGMESNVVVATAIVNMYGKCGSMGDAKMVFDKMPA----KDVICWNSMISA 342

Query: 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP 537
              N  G  A+  +  M  + ++P   T   AL AC+ + SL +G+ IH  +    L   
Sbjct: 343 YALNGLGKSALDLYARMRHSCVRPDAGTFVAALDACSVLNSLEDGKKIHAAISASKLEWN 402

Query: 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597
             + T+LV MY KCG + ++  VF     + L  + AM+   A +G    AL LF  ++ 
Sbjct: 403 VMVATALVSMYGKCGCLERSIAVFRAMEVRNLISWTAMLGALAHNGRDAAALELFARMRD 462

Query: 598 KGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ-----VKPSMEHFGCVVNLLSR 652
           +G   +++ +  ++ A +  G   E L L+  M    +     V+P    F  V   L  
Sbjct: 463 EG--REALLWNALIAAYTARGHPREALRLYAEMILAERRGAPPVRPDRNTFAAV---LEA 517

Query: 653 CGNLDEAL----RVILTM----PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704
           CG++  A     R+I T      CD D  +  +L++   K      A  I   L      
Sbjct: 518 CGSIGTAALGEGRMIHTQAIARACDTDVIVASALIAMYSKCGSLGDAVAIFREL-----S 572

Query: 705 NPGNYVALSNAYAASGRWNEVSQVRDI---MKEKGLRKN 740
              + V ++   AA G   ++    ++   M ++GL+ N
Sbjct: 573 RKRSVVLVTTMIAAYGHHGKLELALELFWEMAQRGLKPN 611


>gi|357486633|ref|XP_003613604.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514939|gb|AES96562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  315 bits (806), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 198/616 (32%), Positives = 322/616 (52%), Gaps = 38/616 (6%)

Query: 161 GLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVA 220
           GL ++AL  +  +     +P+ F  P +LKAC  L      + +H ++ K GF      +
Sbjct: 14  GLYKEALNLYSHLHSSSPTPNTFTFPILLKACSNLSSPSQTQILHAHLFKTGFHSHPHTS 73

Query: 221 SSLIDMYG-KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
           ++LI  Y         A ++FD M    + A+N+++ G  +NG   +A+ +F ++    +
Sbjct: 74  TALIASYAANTRSFHYALELFDEMPQPTITAFNAVLSGLSRNGPRGQAVWLFRQIGFWNI 133

Query: 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV 339
            P  V++ S+LSA  ++      +Q H +A   G+E D  + +S++  YSK G+L  +  
Sbjct: 134 RPNSVTIVSLLSAR-DVKNQSHVQQVHCLACKLGVEYDVYVSTSLVTAYSKCGVLVSSNK 192

Query: 340 VFSRMVERDIVTWNLLIASYVQSGQSDVVV---------------ASSIVDMYAKCERID 384
           VF  +  +++VT+N  ++  +Q+G   VV                  ++V + + C  + 
Sbjct: 193 VFENLRVKNVVTYNAFMSGLLQNGFHRVVFDVFKDMTMNLEEKPNKVTLVSVVSACATLS 252

Query: 385 N---AKQVFN-SIILR---DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437
           N    KQV   S+ L     V++  +L+  Y+  G  G A  +F + +      N+I+WN
Sbjct: 253 NIRLGKQVHGLSMKLEACDHVMVVTSLVDMYSKCGCWGSAFDVFSRSEKR----NLITWN 308

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
           S+I G + N +   A ++F +M   G+ P+  TW +LISG  Q     EA  +F +M   
Sbjct: 309 SMIAGMMMNSESERAVELFERMVDEGILPDSATWNSLISGFAQKGVCVEAFKYFSKMQCA 368

Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP--IVTSLVDMYAKCGNIH 555
           G+ P    +T  LS C D   LR+ +AIHGY +R  +C+     + T+LVD Y KCG + 
Sbjct: 369 GVAPCLKILTSLLSVCGDSCVLRSAKAIHGYALR--ICVDKDDFLATALVDTYMKCGCVS 426

Query: 556 QAKRVFD---ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
            A+ VFD   + P  +   +NAMI GY  +G    A  +F  +  + + P+S TF ++L+
Sbjct: 427 FARFVFDQFDVKPD-DPAFWNAMIGGYGTNGDYESAFEVFYEMLDEMVQPNSATFVSVLS 485

Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
           ACSH+G +  GL  F  M   + + P  EHFGCVV+LL R G L EA R ++    +P A
Sbjct: 486 ACSHSGQIERGLRFF-RMIRKYGLDPKPEHFGCVVDLLGRAGQLGEA-RDLVQELAEPPA 543

Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
            +  SLL  C    ++ L E ++  L+ +EP NP   V LSN YAA GRW+EV ++R ++
Sbjct: 544 SVFDSLLGACRCYLDSNLGEEMAMKLIDIEPKNPAPLVVLSNIYAALGRWSEVERIRGLI 603

Query: 733 KEKGLRKNPGCSWIQI 748
            +KGL KN G S I++
Sbjct: 604 TDKGLDKNSGISMIEV 619



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 223/526 (42%), Gaps = 33/526 (6%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           +S LS+     +AV L  ++   N +        LL     K   +  QQ+H    K G 
Sbjct: 109 LSGLSRNGPRGQAVWLFRQIGFWNIRPNSVTIVSLLSARDVKNQSHV-QQVHCLACKLG- 166

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
               + YV T LV  Y+KC  L  ++++F  LRVKNV ++ A +    + G        F
Sbjct: 167 -VEYDVYVSTSLVTAYSKCGVLVSSNKVFENLRVKNVVTYNAFMSGLLQNGFHRVVFDVF 225

Query: 171 VEMQED-GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
            +M  +    P+   L +V+ AC  L  +  G+ VHG  +K+     V V +SL+DMY K
Sbjct: 226 KDMTMNLEEKPNKVTLVSVVSACATLSNIRLGKQVHGLSMKLEACDHVMVVTSLVDMYSK 285

Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
           CG    A  VF     RN++ WNSMI G + N  +E A+ +F  M  EG+ P   +  S+
Sbjct: 286 CGCWGSAFDVFSRSEKRNLITWNSMIAGMMMNSESERAVELFERMVDEGILPDSATWNSL 345

Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM----V 345
           +S  A      E  +  +     G+     + +S+++      +L  A+ +        V
Sbjct: 346 ISGFAQKGVCVEAFKYFSKMQCAGVAPCLKILTSLLSVCGDSCVLRSAKAIHGYALRICV 405

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR--DVVLWNT 403
           ++D      L+ +Y++ G                C  +  A+ VF+   ++  D   WN 
Sbjct: 406 DKDDFLATALVDTYMKCG----------------C--VSFARFVFDQFDVKPDDPAFWNA 447

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG 463
           ++  Y   G    A  +FY+M  E + PN  ++ SV+     +GQ+      F  ++  G
Sbjct: 448 MIGGYGTNGDYESAFEVFYEMLDEMVQPNSATFVSVLSACSHSGQIERGLRFFRMIRKYG 507

Query: 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
           + P    +  ++  L +     EA    QE+ E    P  +     L AC        G 
Sbjct: 508 LDPKPEHFGCVVDLLGRAGQLGEARDLVQELAE----PPASVFDSLLGACRCYLDSNLGE 563

Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
            +   LI  +   P P+V  L ++YA  G   + +R+  +   K L
Sbjct: 564 EMAMKLIDIEPKNPAPLVV-LSNIYAALGRWSEVERIRGLITDKGL 608



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 1/140 (0%)

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           ++ L  N    EA+  +  +  +   P+T T    L AC++++S    + +H +L +   
Sbjct: 7   VTKLVANGLYKEALNLYSHLHSSSPTPNTFTFPILLKACSNLSSPSQTQILHAHLFKTGF 66

Query: 535 CLPTPIVTSLVDMY-AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593
                  T+L+  Y A   + H A  +FD  P   +  +NA++SG + +G   +A+ LF+
Sbjct: 67  HSHPHTSTALIASYAANTRSFHYALELFDEMPQPTITAFNAVLSGLSRNGPRGQAVWLFR 126

Query: 594 NLQQKGIDPDSITFTNILNA 613
            +    I P+S+T  ++L+A
Sbjct: 127 QIGFWNIRPNSVTIVSLLSA 146


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  315 bits (806), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 190/641 (29%), Positives = 323/641 (50%), Gaps = 74/641 (11%)

Query: 180 PDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKV 239
           P  +VL ++L A    G +   R +   +     D  +F  ++L+        L +  ++
Sbjct: 43  PPTYVLNHLLTAYARSGRLPLARRLFDAMP----DPNLFTRNALLSALAHARLLPDMDRL 98

Query: 240 FDGMIARNVVAWNSMIVGYVQNG------------LNEEAIRVFYEMTLEG--VEPTRVS 285
           F  M  R+ V++N++I G+   G            L EEA+       ++G  V P+R++
Sbjct: 99  FASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAV-------VDGARVRPSRIT 151

Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
           ++ ++ A++ L     G+Q H   +  G        S +++ Y+K+GL+ DA+ VF  MV
Sbjct: 152 MSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMV 211

Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
            +++V +N +I   +                  +C+ ++ A+ VF +++ RD + W T++
Sbjct: 212 VKNVVMYNTMITGLL------------------RCKMVEEARGVFEAMVDRDSITWTTMV 253

Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK------------ 453
                 G   EA  +F +M+ EG+  +  ++ S++          E K            
Sbjct: 254 TGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYD 313

Query: 454 ----------DMFLQMQSLGVQ---------PNLITWTTLISGLTQNSCGNEAILFFQEM 494
                     DM+ + +S+ +           N+I+WT +I G  QN CG EA+  F EM
Sbjct: 314 GNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEM 373

Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554
              GIKP+  T+   +S+C ++ASL  G   H   +   L     + ++LV +Y KCG+I
Sbjct: 374 QTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSI 433

Query: 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
             A R+FD  P  +   Y A++SGYA  G A E + LF+ +  KG+ P+ +TF  +L+AC
Sbjct: 434 EDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSAC 493

Query: 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHI 674
           S +GLV +G   F  M  DH +    +H+ C+++L SR G L EA   I  MP  PDA  
Sbjct: 494 SRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIG 553

Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
             +LLS C    + E+ ++ +E+LL+ +P NP +YV L + +A+ G W+EV+ +R  M++
Sbjct: 554 WATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRD 613

Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
           + ++K PGCSWI+    +H+F A D+SHP +  IY  L  L
Sbjct: 614 RQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWL 654



 Score =  205 bits (521), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 140/470 (29%), Positives = 234/470 (49%), Gaps = 64/470 (13%)

Query: 94  DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAI 153
           D   G+Q+H +I++ G  F    +  + LV  YAK   +  A R+F  + VKNV  +  +
Sbjct: 164 DRALGRQVHCQIMRLG--FGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTM 221

Query: 154 IG--LNCRV-----------------------------GLSEKALIGFVEMQEDGVSPDN 182
           I   L C++                             GL  +AL  F  M+ +GV  D 
Sbjct: 222 ITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQ 281

Query: 183 FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG 242
           +   ++L ACGAL     G+ +H Y ++  +DG +FV S+L+DMY KC  +  A  VF  
Sbjct: 282 YTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRR 341

Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302
           M  +N+++W +MIVGY QNG  EEA+RVF EM  +G++P   ++ S++S+ ANL +L+EG
Sbjct: 342 MTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEG 401

Query: 303 KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362
            Q H +A+++G+     + S+++  Y K G +EDA  +F  M   D V++  L++ Y Q 
Sbjct: 402 AQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQF 461

Query: 363 GQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV----VLWNTLLAAYADLGRSGEAS 418
           G++               E ID    +F  ++L+ V    V +  +L+A +  G   +  
Sbjct: 462 GKAK--------------ETID----LFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGC 503

Query: 419 RLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477
             F+ MQ + GI      +  +I  + R+G++ EA++   QM      P+ I W TL+S 
Sbjct: 504 SYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRC---PDAIGWATLLSA 560

Query: 478 LTQNSCGNEAILFFQEMLETGIK-PSTTTITCALSAC----TDVASLRNG 522
                         + +L+T  + P++  + C++ A     ++VA LR G
Sbjct: 561 CRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRG 610



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 147/558 (26%), Positives = 232/558 (41%), Gaps = 126/558 (22%)

Query: 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG-----------------LNCR 159
           YV   L+  YA+   L +A RLF  +   N+F+  A++                  +  R
Sbjct: 46  YVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQR 105

Query: 160 VGLSEKALI-GFV------------------EMQEDG--VSPDNFVLPNVLKACGALGWV 198
             +S  ALI GF                   E   DG  V P    +  ++ A  ALG  
Sbjct: 106 DAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDR 165

Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGK----------------------------- 229
             GR VH  ++++GF    F  S L+DMY K                             
Sbjct: 166 ALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGL 225

Query: 230 --CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
             C  +EEAR VF+ M+ R+ + W +M+ G  QNGL  EA+ VF  M  EGV   + +  
Sbjct: 226 LRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFG 285

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
           SIL+A   L A +EGKQ HA  +    + +  +GS++++ YSK   +  AE VF RM  +
Sbjct: 286 SILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCK 345

Query: 348 DIVTWNLLIASYVQSG------------QSD----------------------------- 366
           +I++W  +I  Y Q+G            Q+D                             
Sbjct: 346 NIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFH 405

Query: 367 -----------VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                      + V+S++V +Y KC  I++A ++F+ +   D V +  L++ YA  G++ 
Sbjct: 406 CMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAK 465

Query: 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTL 474
           E   LF +M L+G+ PN +++  V+    R+G + +    F  MQ   G+      +T +
Sbjct: 466 ETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCM 525

Query: 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534
           I   +++    EA  F ++M      P        LSAC     +  G+     L++ D 
Sbjct: 526 IDLYSRSGRLKEAEEFIRQMPRC---PDAIGWATLLSACRLRGDMEIGKWAAENLLKTDP 582

Query: 535 CLPTPIVTSLVDMYAKCG 552
             P   V  L  M+A  G
Sbjct: 583 QNPASYVL-LCSMHASKG 599



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 174/320 (54%), Gaps = 6/320 (1%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           ++ L++     EA+D+   M+     I    +G +L  C        G+QIHA  ++   
Sbjct: 253 VTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRT-- 310

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
            +  N +V + LV  Y+KC ++ +A  +F R+  KN+ SW A+I    + G  E+A+  F
Sbjct: 311 LYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVF 370

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
            EMQ DG+ P++F L +V+ +C  L  +  G   H   L  G    + V+S+L+ +YGKC
Sbjct: 371 SEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKC 430

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G +E+A ++FD M   + V++ +++ GY Q G  +E I +F +M L+GV+P  V+   +L
Sbjct: 431 GSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVL 490

Query: 291 SASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER-- 347
           SA +    +++G    H++   +G+ L +   + +I+ YS+ G L++AE  F R + R  
Sbjct: 491 SACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAE-EFIRQMPRCP 549

Query: 348 DIVTWNLLIASYVQSGQSDV 367
           D + W  L+++    G  ++
Sbjct: 550 DAIGWATLLSACRLRGDMEI 569


>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
          Length = 839

 Score =  315 bits (806), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 201/659 (30%), Positives = 324/659 (49%), Gaps = 112/659 (16%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF----- 271
           +F  +S I  + + G+L+EA  +F  M  R++V+W +MI  Y +NG   +A +VF     
Sbjct: 50  IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109

Query: 272 -----------------------YEMTLEGVEPTRVSVTSILSASANLDALDE------- 301
                                  YE+  +  E   VS  ++++        DE       
Sbjct: 110 RVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 302 ---------------------GKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEV 339
                                GK   AV V  GM +  V+  SS+++ Y K+G + DA  
Sbjct: 170 TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARS 229

Query: 340 VFSRMVERDIVTWNLLIASYVQSG--------------QSDVVVAS-SIVDMYAKCE--- 381
           +F RM ER+++TW  +I  Y ++G              + DV V S ++  M+  C    
Sbjct: 230 LFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFV 289

Query: 382 RIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           R     Q+ + ++ R     D+ L N+L++ Y+ LG  GEA  +F  M+    + + +SW
Sbjct: 290 RYREGSQI-HGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMK----NKDSVSW 344

Query: 437 NSVILGFLRNGQMNEAKDMFLQM-------------------------QSLGVQP--NLI 469
           NS+I G ++  Q++EA ++F +M                         +  G+ P  + I
Sbjct: 345 NSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNI 404

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           TWT +IS    N    EA+ +F +ML+  + P++ T +  LSA   +A L  G  IHG +
Sbjct: 405 TWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRV 464

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
           ++ ++     +  SLV MY KCGN + A ++F       +  YN MISGY+ +G   +AL
Sbjct: 465 VKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKAL 524

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
            LF  L+  G +P+ +TF  +L+AC H G V+ G + F  M S + ++P  +H+ C+V+L
Sbjct: 525 KLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDL 584

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
           L R G LD+A  +I TMPC P + + GSLLS        +LAE  ++ L++LEPD+   Y
Sbjct: 585 LGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPY 644

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           V LS  Y+  G+  +  ++ +I K K ++K+PG SWI +  E+H F+A D S    EEI
Sbjct: 645 VVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEI 703



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 221/479 (46%), Gaps = 47/479 (9%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-V 178
           + +V  Y K   +  A  LF R+  +NV +W A+I    + G  E     F+ M+++G V
Sbjct: 212 SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
             ++  L  + KAC        G  +HG V ++  +  +F+ +SL+ MY K G + EA+ 
Sbjct: 272 KVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKA 331

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VF  M  ++ V+WNS+I G VQ     EA  +F +M  + +    VS T ++   +    
Sbjct: 332 VFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDM----VSWTDMIKGFSG--- 384

Query: 299 LDEGKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
             +G+ +  V +   M E DN+  +++I+ +   G  E+A   F +M+++++   +   +
Sbjct: 385 --KGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFS 442

Query: 358 SYVQSGQS---------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           S + +  S                     D+ V +S+V MY KC   ++A ++F+ I   
Sbjct: 443 SVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEP 502

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           ++V +NT+++ Y+  G   +A +LF  ++  G  PN +++ +++   +  G ++     F
Sbjct: 503 NIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYF 562

Query: 457 LQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC-- 513
             M+ S  ++P    +  ++  L ++   ++A      M     KP +      LSA   
Sbjct: 563 KSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTM---PCKPHSGVWGSLLSASKT 619

Query: 514 ---TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
               D+A L   + I    +  D   P  +++ L   Y+  G      R+ +I  SK +
Sbjct: 620 HLRVDLAELAAKKLIE---LEPDSATPYVVLSQL---YSIIGKNRDCDRIMNIKKSKRI 672



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 17/238 (7%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  +L       D+  G QIH R++K       +  V+  LV  Y KC   + A ++F  
Sbjct: 441 FSSVLSATASLADLIEGLQIHGRVVKMN--IVNDLSVQNSLVSMYCKCGNTNDAYKIFSC 498

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA-----LG 196
           +   N+ S+  +I      G  +KAL  F  ++  G  P+      +L AC       LG
Sbjct: 499 ISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLG 558

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI 255
           W  F      Y ++ G D      + ++D+ G+ G L++A  +   M  + +   W S++
Sbjct: 559 WKYFKSMKSSYNIEPGPDH----YACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLL 614

Query: 256 VG---YVQNGLNEEAIRVFYEMTLEGVEPTRV--SVTSILSASANLDALDEGKQAHAV 308
                +++  L E A +   E+  +   P  V   + SI+  + + D +   K++  +
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRI 672


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  315 bits (806), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 189/635 (29%), Positives = 322/635 (50%), Gaps = 84/635 (13%)

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVT 287
           K G L +AR +FD M  R+ ++W ++I GYV    + EA+ +F  M +  G +  +  ++
Sbjct: 69  KQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMIS 128

Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
             L A A    +  G+  H  +V +G+     + S++I+ Y KVG +E    VF +M+ R
Sbjct: 129 VALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTR 188

Query: 348 DIVTWNLLIASYVQ--------------------------------SGQSDVV------- 368
           ++V+W  +IA  V                                 S  S ++       
Sbjct: 189 NVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIH 248

Query: 369 -------------VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSG 415
                        V +++  MY KC + D   ++F  + + DVV W TL++ Y  +G   
Sbjct: 249 TQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEE 308

Query: 416 EASRLFYQMQLEGISPN------IIS---------WNSVILGF-LRNGQMNE-------- 451
            A   F +M+   +SPN      +IS         W   I G  LR G +N         
Sbjct: 309 HAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSII 368

Query: 452 ---AKDMFLQMQSL---GV-QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
              +K   L+  SL   G+ + ++I+W+T+IS  +Q     EA  +   M   G KP+  
Sbjct: 369 TLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEF 428

Query: 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDIS 564
            ++  LS C  +A L  G+ +H +L+   +     + ++++ MY+KCG++ +A ++F+  
Sbjct: 429 ALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGM 488

Query: 565 PSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624
              ++  + AMI+GYA HG + EA+ LF+ +   G+ PD + F  +L AC+HAG+V+ G 
Sbjct: 489 KINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGF 548

Query: 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684
             F+ M + +++ PS EH+GC+++LL R G L EA  +I +MP   D  +  +LL  C  
Sbjct: 549 YYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRV 608

Query: 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744
             + +   + +E LLQL+P++ G ++ L+N YAA GRW E + +R +MK KG+ K  G S
Sbjct: 609 HGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWS 668

Query: 745 WIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
           W+ + ++L+ FVA D++HP++E I   L LL  ++
Sbjct: 669 WVNVNDQLNAFVAGDQAHPQSEHITTVLKLLSANI 703



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/541 (25%), Positives = 239/541 (44%), Gaps = 71/541 (13%)

Query: 86  LQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK 145
           L+ C    ++  G+ +H   +K+G     + +V + L+  Y K   ++   R+F ++  +
Sbjct: 131 LKACALGVNICFGELLHGFSVKSG--LIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTR 188

Query: 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205
           NV SW AII      G + + L+ F EM    V  D+      LKA      +  G+A+H
Sbjct: 189 NVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIH 248

Query: 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNE 265
              +K GFD   FV ++L  MY KCG  +   ++F+ M   +VV+W ++I  YVQ G  E
Sbjct: 249 TQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEE 308

Query: 266 EAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA----VAVINGMELDNVLG 321
            A+  F  M    V P + +  +++S+ ANL A   G+Q H     + ++N + + N   
Sbjct: 309 HAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVAN--- 365

Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS---------------- 365
            SII  YSK GLL+ A +VF  +  +DI++W+ +I+ Y Q G +                
Sbjct: 366 -SIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPK 424

Query: 366 ------------------------------------DVVVASSIVDMYAKCERIDNAKQV 389
                                               + +V S+I+ MY+KC  +  A ++
Sbjct: 425 PNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKI 484

Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
           FN + + D++ W  ++  YA+ G S EA  LF ++   G+ P+ + +  V+      G +
Sbjct: 485 FNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMV 544

Query: 450 NEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
           +     F+ M ++  + P+   +  LI  L +    +EA    + M            + 
Sbjct: 545 DLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSM---PFHTDDVVWST 601

Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT--SLVDMYAKCGNIHQAKRVFDISPS 566
            L AC     +  GR     L++ D   P    T  +L ++YA  G   +A  +  +  S
Sbjct: 602 LLRACRVHGDVDRGRWTAEQLLQLD---PNSAGTHITLANIYAAKGRWKEAAHIRKLMKS 658

Query: 567 K 567
           K
Sbjct: 659 K 659



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 160/325 (49%), Gaps = 18/325 (5%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGD 110
           IS+  +  +   AV+    M+          +  ++  C        G+QIH  +L+ G 
Sbjct: 298 ISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGL 357

Query: 111 FFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGF 170
             A +  V   ++  Y+KC  L  AS +F  +  K++ SW+ II +  + G +++A    
Sbjct: 358 VNALS--VANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYL 415

Query: 171 VEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC 230
             M+ +G  P+ F L +VL  CG++  +  G+ VH ++L +G D    V S++I MY KC
Sbjct: 416 SWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKC 475

Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSIL 290
           G ++EA K+F+GM   ++++W +MI GY ++G ++EAI +F +++  G++P  V    +L
Sbjct: 476 GSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVL 535

Query: 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSS--------IINFYSKVGLLEDAEVVFS 342
           +A  +   +D G           M + NV   S        +I+   + G L +AE +  
Sbjct: 536 TACNHAGMVDLG-------FYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIR 588

Query: 343 RM-VERDIVTWNLLIASYVQSGQSD 366
            M    D V W+ L+ +    G  D
Sbjct: 589 SMPFHTDDVVWSTLLRACRVHGDVD 613


>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
           gb|AF151215 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana]
          Length = 816

 Score =  314 bits (805), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 201/659 (30%), Positives = 324/659 (49%), Gaps = 112/659 (16%)

Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF----- 271
           +F  +S I  + + G+L+EA  +F  M  R++V+W +MI  Y +NG   +A +VF     
Sbjct: 50  IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109

Query: 272 -----------------------YEMTLEGVEPTRVSVTSILSASANLDALDE------- 301
                                  YE+  +  E   VS  ++++        DE       
Sbjct: 110 RVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 302 ---------------------GKQAHAVAVINGMELDNVLG-SSIINFYSKVGLLEDAEV 339
                                GK   AV V  GM +  V+  SS+++ Y K+G + DA  
Sbjct: 170 TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARS 229

Query: 340 VFSRMVERDIVTWNLLIASYVQSG--------------QSDVVVAS-SIVDMYAKCE--- 381
           +F RM ER+++TW  +I  Y ++G              + DV V S ++  M+  C    
Sbjct: 230 LFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFV 289

Query: 382 RIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436
           R     Q+ + ++ R     D+ L N+L++ Y+ LG  GEA  +F  M+    + + +SW
Sbjct: 290 RYREGSQI-HGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMK----NKDSVSW 344

Query: 437 NSVILGFLRNGQMNEAKDMFLQM-------------------------QSLGVQP--NLI 469
           NS+I G ++  Q++EA ++F +M                         +  G+ P  + I
Sbjct: 345 NSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNI 404

Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
           TWT +IS    N    EA+ +F +ML+  + P++ T +  LSA   +A L  G  IHG +
Sbjct: 405 TWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRV 464

Query: 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589
           ++ ++     +  SLV MY KCGN + A ++F       +  YN MISGY+ +G   +AL
Sbjct: 465 VKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKAL 524

Query: 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649
            LF  L+  G +P+ +TF  +L+AC H G V+ G + F  M S + ++P  +H+ C+V+L
Sbjct: 525 KLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDL 584

Query: 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709
           L R G LD+A  +I TMPC P + + GSLLS        +LAE  ++ L++LEPD+   Y
Sbjct: 585 LGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPY 644

Query: 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           V LS  Y+  G+  +  ++ +I K K ++K+PG SWI +  E+H F+A D S    EEI
Sbjct: 645 VVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEI 703



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 221/479 (46%), Gaps = 47/479 (9%)

Query: 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-V 178
           + +V  Y K   +  A  LF R+  +NV +W A+I    + G  E     F+ M+++G V
Sbjct: 212 SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
             ++  L  + KAC        G  +HG V ++  +  +F+ +SL+ MY K G + EA+ 
Sbjct: 272 KVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKA 331

Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
           VF  M  ++ V+WNS+I G VQ     EA  +F +M  + +    VS T ++   +    
Sbjct: 332 VFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDM----VSWTDMIKGFSG--- 384

Query: 299 LDEGKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357
             +G+ +  V +   M E DN+  +++I+ +   G  E+A   F +M+++++   +   +
Sbjct: 385 --KGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFS 442

Query: 358 SYVQSGQS---------------------DVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
           S + +  S                     D+ V +S+V MY KC   ++A ++F+ I   
Sbjct: 443 SVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEP 502

Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
           ++V +NT+++ Y+  G   +A +LF  ++  G  PN +++ +++   +  G ++     F
Sbjct: 503 NIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYF 562

Query: 457 LQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC-- 513
             M+ S  ++P    +  ++  L ++   ++A      M     KP +      LSA   
Sbjct: 563 KSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTM---PCKPHSGVWGSLLSASKT 619

Query: 514 ---TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
               D+A L   + I    +  D   P  +++ L   Y+  G      R+ +I  SK +
Sbjct: 620 HLRVDLAELAAKKLIE---LEPDSATPYVVLSQL---YSIIGKNRDCDRIMNIKKSKRI 672



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 17/238 (7%)

Query: 82  YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
           +  +L       D+  G QIH R++K       +  V+  LV  Y KC   + A ++F  
Sbjct: 441 FSSVLSATASLADLIEGLQIHGRVVKMN--IVNDLSVQNSLVSMYCKCGNTNDAYKIFSC 498

Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA-----LG 196
           +   N+ S+  +I      G  +KAL  F  ++  G  P+      +L AC       LG
Sbjct: 499 ISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLG 558

Query: 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMI 255
           W  F      Y ++ G D      + ++D+ G+ G L++A  +   M  + +   W S++
Sbjct: 559 WKYFKSMKSSYNIEPGPDH----YACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLL 614

Query: 256 VG---YVQNGLNEEAIRVFYEMTLEGVEPTRV--SVTSILSASANLDALDEGKQAHAV 308
                +++  L E A +   E+  +   P  V   + SI+  + + D +   K++  +
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRI 672


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  314 bits (805), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 203/663 (30%), Positives = 314/663 (47%), Gaps = 87/663 (13%)

Query: 200 FGRAVHGYVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA-RNVVAWNSMIVG 257
            GRA+H  +L     D    VA+SL+ MY KCG +  AR+VFDGM   R++V+W +M   
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFC 120

Query: 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDAL-DEGKQAHAVAVINGM-E 315
             +NG  +EA+ +  EM   G+ P   ++ +   A    +     G      A+  G   
Sbjct: 121 LTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWG 180

Query: 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS------------- 362
            D  +G ++I+ +++ G L  A  VF+ +VER +V W L+I  YVQ              
Sbjct: 181 TDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGM 240

Query: 363 ---------------------------GQ------------SDVVVASSIVDMYAKCE-- 381
                                      GQ            SD  V+  +VDMY K +  
Sbjct: 241 LEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQME 300

Query: 382 -RIDNAKQVFNSIILRDVVLWNTLLAAYADLG-RSGEASRLFYQMQLEGISPNIISWNSV 439
             ++ A++VF  +   +V+ W  L++ Y   G +   A  L  +M  E I PN ++++S+
Sbjct: 301 QSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSL 360

Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE--- 496
           +         +  + +  ++    +    +    L+S   ++ C  EA   F ++ E   
Sbjct: 361 LKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNL 420

Query: 497 ---------TG--------------IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
                    TG              +  ST T    LSA   V     G+ +H   I+  
Sbjct: 421 LSTSSDIGETGRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTG 480

Query: 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFD-ISPSKELPVYNAMISGYAMHGLAVEALALF 592
                 I  SLV MY++CG +  A R FD +     +  + ++IS  A HG A  AL+LF
Sbjct: 481 FESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLF 540

Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
            ++   G+ P+ +T+  +L+ACSH GLV EG E F  M  DH++ P MEH+ C+V+LL+R
Sbjct: 541 HDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLAR 600

Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
            G + EAL  I  MPC  DA +  +LL  C      E+ E  + H++ LEP +P  YV L
Sbjct: 601 SGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLL 660

Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
           SN YA  G W+EV+++R +M+ + L K  G SW+ +G  +H F A D SHP+ +EIYA L
Sbjct: 661 SNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKL 720

Query: 773 ALL 775
           A+L
Sbjct: 721 AVL 723



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 122/514 (23%), Positives = 220/514 (42%), Gaps = 66/514 (12%)

Query: 62  EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETK 121
           +AV+L   M    F+        ++  C  +     GQQ+H+ +L+ G     +  V   
Sbjct: 232 KAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLG--LVSDTCVSCG 289

Query: 122 LVVFYAKC---DALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFV-EMQEDG 177
           LV  Y K     +++ A ++F R+   NV SW A+I    + G  E   +  + EM  + 
Sbjct: 290 LVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNES 349

Query: 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237
           + P++    ++LKAC  L     GR +H  V+K        V ++L+ MY + G +EEAR
Sbjct: 350 IEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEAR 409

Query: 238 KVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
           K FD +  RN+++ +S I    + G +  +     E    GV  +  +  S+LSA+A + 
Sbjct: 410 KAFDQLYERNLLSTSSDI---GETGRSNASWSSQIESMDVGV--STFTFASLLSAAATVG 464

Query: 298 ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV-ERDIVTWNLLI 356
              +G+Q HA+++  G E D  + +S+++ YS+ G L+DA   F  M  + ++++W  +I
Sbjct: 465 LPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSII 524

Query: 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGE 416
           ++  + G ++                                                  
Sbjct: 525 SALAKHGHAE-------------------------------------------------R 535

Query: 417 ASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLI 475
           A  LF+ M L G+ PN +++ +V+      G + E K+ F  MQ    + P +  +  ++
Sbjct: 536 ALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMV 595

Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
             L ++    EA+ F  EM     K         L AC    ++  G     ++I  +  
Sbjct: 596 DLLARSGLVQEALEFINEM---PCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQ 652

Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL 569
            P P V  L ++YA  G   +  R+  +   + L
Sbjct: 653 DPAPYVL-LSNLYAHGGLWDEVARIRSLMRHRNL 685



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 157/308 (50%), Gaps = 20/308 (6%)

Query: 59  QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
           Q   AV+LL EM   + +     Y  LL+ C    D  +G+QIHAR++K          V
Sbjct: 334 QENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTS--IGNVNVV 391

Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
              LV  YA+   ++ A + F +L  +N+ S ++ IG     G S  +    +E  + GV
Sbjct: 392 GNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIG---ETGRSNASWSSQIESMDVGV 448

Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
           S   F   ++L A   +G    G+ +H   +K GF+    +++SL+ MY +CG L++A +
Sbjct: 449 S--TFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACR 506

Query: 239 VFDGM-IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD 297
            FD M    NV++W S+I    ++G  E A+ +F++M L GV+P  V+  ++LSA +++ 
Sbjct: 507 AFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVG 566

Query: 298 ALDEGKQAHAVAVINGMELDNVL------GSSIINFYSKVGLLEDA-EVVFSRMVERDIV 350
            + EGK+         M+ D+ L       + +++  ++ GL+++A E +     + D +
Sbjct: 567 LVKEGKE-----YFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADAL 621

Query: 351 TWNLLIAS 358
            W  L+ +
Sbjct: 622 VWKTLLGA 629


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 181/630 (28%), Positives = 316/630 (50%), Gaps = 72/630 (11%)

Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIA--RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
           A+SL+  +   G L +A   FD +    R+ V  N+M+  + +  L   A+ VF+ +   
Sbjct: 97  ATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGS 156

Query: 278 G-VEPTRVSVTSILSASANLD--ALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334
           G + P   S T+++SA   +   A     Q H   + +G      + +++I  Y K    
Sbjct: 157 GSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTP 216

Query: 335 E---DAEVVFSRMVERDIVTWNLLIASYVQSGQSDV-------------VVASSIVDMYA 378
           E   DA  V   M ++D +TW  ++  YV+ G  +              VV ++++  Y 
Sbjct: 217 EASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYV 276

Query: 379 KCERIDNAKQVFNSIILRDVVL-------------------------------------- 400
           +     +A ++F  ++   V L                                      
Sbjct: 277 QSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPE 336

Query: 401 -----WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
                 N L+  Y+  G+   A R+F  M L+    +++SWN+++ G++ +G +++A ++
Sbjct: 337 AALPVNNALVTLYSKGGKIVIAKRIFDTMNLK----DVVSWNTILSGYIDSGCLDKAVEV 392

Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515
           F  M       N ++W  ++SG        +A+  F +M    +KP   T   A++AC +
Sbjct: 393 FKVMP----YKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGE 448

Query: 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM 575
           + +L++GR +H +L++           +L+ MYAKCG ++ A+ VF + P+ +   +NAM
Sbjct: 449 LGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAM 508

Query: 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635
           IS    HG   EAL LF  +  +GIDPD I+F  IL AC+HAGLV+EG   F  M  D  
Sbjct: 509 ISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFG 568

Query: 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYIS 695
           + P  +H+  +++LL R G + EA  +I TMP +P   I  ++LS C  + + E   Y +
Sbjct: 569 ISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAA 628

Query: 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755
           + L ++ P + G Y+ LSN Y+A+GRW + ++VR +M+++G++K PGCSWI++G ++HVF
Sbjct: 629 DQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVF 688

Query: 756 VACDRSHPKTEEIYATLALLGMHVRLVSKV 785
           +  D  HP+ +E+Y  L ++G  +R +  V
Sbjct: 689 LVGDTKHPEAQEVYQFLEVIGARMRKLGYV 718



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 187/404 (46%), Gaps = 53/404 (13%)

Query: 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM 173
           +++   T +VV Y +   ++ A  +F  +  K    W A+I    + G+   A   F  M
Sbjct: 232 KDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRM 291

Query: 174 QEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKV--GF--DGCVFVASSLIDMYGK 229
             + V  D F   +VL AC   G+   G++VHG ++++   F  +  + V ++L+ +Y K
Sbjct: 292 VSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSK 351

Query: 230 CGDLEEARKVFDGMIARNVVAWNS-------------------------------MIVGY 258
            G +  A+++FD M  ++VV+WN+                               M+ GY
Sbjct: 352 GGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGY 411

Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
           V  GL+E+A+++F +M  E V+P   +    ++A   L AL  G+Q HA  V  G E  N
Sbjct: 412 VHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASN 471

Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
             G++++  Y+K G + DA +VF  M   D V+WN +I++  Q G               
Sbjct: 472 SAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGR------------ 519

Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE-GISPNIISWN 437
             E ++   Q+    I  D + + T+L A    G   E    F  M+ + GISP    + 
Sbjct: 520 --EALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYA 577

Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
            +I    R+G++ EA+D+   ++++  +P    W  ++SG   N
Sbjct: 578 RLIDLLGRSGRIGEARDL---IKTMPFEPTPSIWEAILSGCRTN 618



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 135/544 (24%), Positives = 227/544 (41%), Gaps = 106/544 (19%)

Query: 152 AIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRA--VHGYV 208
           A++    R  L+  A+  F  +   G + PD++    ++ A G +  +       +H  V
Sbjct: 132 AMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSV 191

Query: 209 LKVGFDGCVFVASSLIDMYGKCGDLE---EARKVFDGMIARNVVAWNSMIV--------- 256
           LK G    + V+++LI +Y KC   E   +ARKV D M  ++ + W +M+V         
Sbjct: 192 LKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVN 251

Query: 257 ----------------------GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASA 294
                                 GYVQ+G+  +A  +F  M  E V     + TS+LSA A
Sbjct: 252 AARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACA 311

Query: 295 NLDALDEGKQAHAVAVI--------NGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVE 346
           N      GK  H   +           + ++N L    +  YSK G +  A+ +F  M  
Sbjct: 312 NAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNAL----VTLYSKGGKIVIAKRIFDTMNL 367

Query: 347 RDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
           +D+V+WN +++ Y+ SG                C  +D A +VF  +  ++ + W  +++
Sbjct: 368 KDVVSWNTILSGYIDSG----------------C--LDKAVEVFKVMPYKNDLSWMVMVS 409

Query: 407 AYADLGRSGEASRLFYQMQLEGISPNIISWNSVI-----LGFLRNGQM------------ 449
            Y   G S +A +LF QM+ E + P   ++   I     LG L++G+             
Sbjct: 410 GYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEA 469

Query: 450 -NEAKDMFLQMQS-----------LGVQPNL--ITWTTLISGLTQNSCGNEAILFFQEML 495
            N A +  L M +             V PNL  ++W  +IS L Q+  G EA+  F +M+
Sbjct: 470 SNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMV 529

Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP-TPIVTSLVDMYAKCGNI 554
             GI P   +    L+AC     +  G      + R     P       L+D+  + G I
Sbjct: 530 AEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRI 589

Query: 555 HQAKRVFDISPSKELP-VYNAMISGYAMHG----LAVEALALFKNLQQKGIDPDSITFTN 609
            +A+ +    P +  P ++ A++SG   +G     A  A  LF+ + Q   D   I  +N
Sbjct: 590 GEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQH--DGTYILLSN 647

Query: 610 ILNA 613
             +A
Sbjct: 648 TYSA 651



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 35  ESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRD 94
           ++D S+  +   Y H    LS++     A+ L  +M+  + +     Y   +  C     
Sbjct: 399 KNDLSWMVMVSGYVH--GGLSED-----ALKLFNQMRAEDVKPCDYTYAGAIAACGELGA 451

Query: 95  MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAII 154
           +  G+Q+HA +++ G  F  +      L+  YAKC A++ A  +F  +   +  SW A+I
Sbjct: 452 LKHGRQLHAHLVQCG--FEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMI 509

Query: 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG-----FGRAVHGYVL 209
               + G   +AL  F +M  +G+ PD      +L AC   G V      F      + +
Sbjct: 510 SALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGI 569

Query: 210 KVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA-WNSMIVGYVQNG 262
             G D      + LID+ G+ G + EAR +   M      + W +++ G   NG
Sbjct: 570 SPGEDH----YARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNG 619



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 523 RAIHGYLIRHDLCLPTPI-----------VTSLVDMYAKCGNIHQAKRVFDISPS--KEL 569
           R IH Y +  DL  P  +            TSLV  +A  G +  A   FD  P   ++ 
Sbjct: 68  RLIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDT 127

Query: 570 PVYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNA 613
            ++NAM+S +A   LA  A+++F  L   G + PD  +FT +++A
Sbjct: 128 VLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISA 172


>gi|225459429|ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Vitis vinifera]
          Length = 700

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 190/590 (32%), Positives = 300/590 (50%), Gaps = 73/590 (12%)

Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307
           V +WN +I G VQNG  E+A+ +F  M     +P  +++ SIL A   L AL  GK  HA
Sbjct: 10  VNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHA 69

Query: 308 VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ--- 364
           +A+ +G+  +  +  S+I+ YSK G  + AE VF +   ++   WN +IA+YV  G+   
Sbjct: 70  IALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGKVED 129

Query: 365 --------------SDVVVASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLA 406
                          DV+  ++I+  +A+      A ++ + ++      +VV +N L++
Sbjct: 130 ALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQMGLKPNVVSFNVLIS 189

Query: 407 AYADLGRSGEASRLFYQMQ----------------------------------------- 425
            +   G S EA ++F  MQ                                         
Sbjct: 190 GFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKE 249

Query: 426 ------LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479
                   G  PNI   ++++  + +   M+ A  +F ++       N ++W  L++G  
Sbjct: 250 IHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGR----NTVSWNALMAGYI 305

Query: 480 QNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC-LPT 538
            N    EA+  F EML  G++PS+ T      AC D+A++R GR +HGY  +  L  L  
Sbjct: 306 YNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKN 365

Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
            I ++L+DMYAKCG+I  AK VFD    K++P++NAMIS +++HG+A  A A+F  ++  
Sbjct: 366 AIASALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFVQMELL 425

Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
           GI PD ITF ++L+AC+  GLV EG + F  M   + V  ++EH+ C+V +L   G LDE
Sbjct: 426 GILPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDE 485

Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
           AL  I  MP  PDA +  +LL  C   +  E+ E  ++ L +LEPDN  NY+ LSN Y +
Sbjct: 486 ALDFIRQMPYPPDACMWATLLQACRVHSNPEIGERAAKALFELEPDNATNYMLLSNIYVS 545

Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
           SG W+    +R  M+ + L     CS++ +G  +  F   + SHP+ EEI
Sbjct: 546 SGMWDFAKNLRSFMRGRKLLTIKECSYLTVGSHICTFKGGESSHPELEEI 595



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 188/369 (50%), Gaps = 31/369 (8%)

Query: 128 KCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQE--DGVSPDNFV- 184
           K  A ++ S +       NV S+  +I    + GLS +AL  F  MQ   DG +P+  + 
Sbjct: 162 KTQAFELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLN 221

Query: 185 ---LPN------VLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235
               PN       L AC  L     G+ +HGY L+ GF+  +FV+S+L+DMY KC D++ 
Sbjct: 222 LSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDS 281

Query: 236 ARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295
           A KVF  +  RN V+WN+++ GY+ N   EEA+++F EM  EG++P+ ++   +  A  +
Sbjct: 282 ANKVFFRIDGRNTVSWNALMAGYIYNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGD 341

Query: 296 LDALDEGKQAHAVAVINGM-ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL 354
           + A+  G+  H  A    + EL N + S++I+ Y+K G + DA+ VF   VE+D+  WN 
Sbjct: 342 IAAIRFGRGLHGYAAKCQLDELKNAIASALIDMYAKCGSILDAKSVFDSEVEKDVPLWNA 401

Query: 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414
           +I+++   G     +A +   ++ + E +          IL D + + +LL+A A  G  
Sbjct: 402 MISAFSVHG-----MARNAFAVFVQMELLG---------ILPDHITFVSLLSACARDGLV 447

Query: 415 GEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
            E  + F  M++  G++  +  +  ++      G ++EA D   QM      P+   W T
Sbjct: 448 EEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIRQMP---YPPDACMWAT 504

Query: 474 LISGLTQNS 482
           L+     +S
Sbjct: 505 LLQACRVHS 513



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 138/531 (25%), Positives = 225/531 (42%), Gaps = 106/531 (19%)

Query: 51  ISSLSKEKQIREAVDLLTEMKCRNFQIGPEIY--GELLQGCVYKRDMYTGQQIHARILKN 108
           IS   +   + +A+D+ + M    +   P I     +L  C   + +  G+ IHA  LK+
Sbjct: 17  ISGCVQNGYLEDALDMFSRMLW--YPEDPNIITIASILPACTGLKALRLGKAIHAIALKH 74

Query: 109 GDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALI 168
           G     N YVE  ++  Y+KC + D A ++F +   KN   W  +I      G  E AL 
Sbjct: 75  G--IVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGKVEDALG 132

Query: 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYG 228
               MQ+DG  PD      +L           G A +G                      
Sbjct: 133 LLRSMQKDGWKPDVITYNTILS----------GHARNGL--------------------- 161

Query: 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE----------- 277
           K    E   ++    +  NVV++N +I G+ Q+GL+ EA++VF  M              
Sbjct: 162 KTQAFELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLN 221

Query: 278 -GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
             + P  +++T  L A A+L+   +GK+ H   + NG E +  + S++++ Y+K   ++ 
Sbjct: 222 LSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDS 281

Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV------------ASSIV---------- 374
           A  VF R+  R+ V+WN L+A Y+ + Q +  +             SSI           
Sbjct: 282 ANKVFFRIDGRNTVSWNALMAGYIYNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGD 341

Query: 375 -------------------------------DMYAKCERIDNAKQVFNSIILRDVVLWNT 403
                                          DMYAKC  I +AK VF+S + +DV LWN 
Sbjct: 342 IAAIRFGRGLHGYAAKCQLDELKNAIASALIDMYAKCGSILDAKSVFDSEVEKDVPLWNA 401

Query: 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SL 462
           +++A++  G +  A  +F QM+L GI P+ I++ S++    R+G + E    F  M+ S 
Sbjct: 402 MISAFSVHGMARNAFAVFVQMELLGILPDHITFVSLLSACARDGLVEEGWKYFNSMEISY 461

Query: 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
           GV   L  +T ++  L      +EA+ F ++M      P        L AC
Sbjct: 462 GVAATLEHYTCMVGILGGAGLLDEALDFIRQM---PYPPDACMWATLLQAC 509



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 138/533 (25%), Positives = 219/533 (41%), Gaps = 98/533 (18%)

Query: 147 VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHG 206
           V SW  II    + G  E AL  F  M      P+   + ++L AC  L  +  G+A+H 
Sbjct: 10  VNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHA 69

Query: 207 YVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEE 266
             LK G  G V+V  S+IDMY KCG  + A KVF     +N   WN MI  YV  G  E+
Sbjct: 70  IALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGKVED 129

Query: 267 AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIIN 326
           A+ +   M  +G +P  ++  +ILS  A      +  +  +  V  G++ + V  + +I+
Sbjct: 130 ALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQMGLKPNVVSFNVLIS 189

Query: 327 FYSKVGLLEDAEVVFSRMVE-----------------------------RDIVTW--NLL 355
            + + GL  +A  VF  M                                D+  W     
Sbjct: 190 GFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKE 249

Query: 356 IASY-VQSG-QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
           I  Y +++G + ++ V+S++VDMYAKC  +D+A +VF  I  R+ V WN L+A Y    +
Sbjct: 250 IHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIYNKQ 309

Query: 414 SGEASRLFYQMQLEGISPNIIS---------------WNSVILGFLRNGQMNEAK----- 453
             EA +LF +M  EG+ P+ I+               +   + G+    Q++E K     
Sbjct: 310 PEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIAS 369

Query: 454 ---DMFLQMQSL---------GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501
              DM+ +  S+          V+ ++  W  +IS  + +     A   F +M   GI P
Sbjct: 370 ALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFVQMELLGILP 429

Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561
              T    LSAC      R+G    G+   + + +   +  +L                 
Sbjct: 430 DHITFVSLLSACA-----RDGLVEEGWKYFNSMEISYGVAATLEH--------------- 469

Query: 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614
                     Y  M+      GL  EAL     ++Q    PD+  +  +L AC
Sbjct: 470 ----------YTCMVGILGGAGLLDEALDF---IRQMPYPPDACMWATLLQAC 509



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 1/228 (0%)

Query: 459 MQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518
           M   G+QP + +W  +ISG  QN    +A+  F  ML     P+  TI   L ACT + +
Sbjct: 1   MPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKA 60

Query: 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISG 578
           LR G+AIH   ++H +     +  S++DMY+KCG+   A++VF  + +K   ++N MI+ 
Sbjct: 61  LRLGKAIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAA 120

Query: 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638
           Y   G   +AL L +++Q+ G  PD IT+  IL+  +  GL  +  EL   M     +KP
Sbjct: 121 YVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQ-MGLKP 179

Query: 639 SMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSN 686
           ++  F  +++   + G   EAL+V   M    D      +L+  ++ N
Sbjct: 180 NVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPN 227


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.136    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,003,214,835
Number of Sequences: 23463169
Number of extensions: 495024110
Number of successful extensions: 1508592
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11446
Number of HSP's successfully gapped in prelim test: 1491
Number of HSP's that attempted gapping in prelim test: 1200256
Number of HSP's gapped (non-prelim): 80089
length of query: 788
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 637
effective length of database: 8,816,256,848
effective search space: 5615955612176
effective search space used: 5615955612176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)