Query 035503
Match_columns 788
No_of_seqs 664 out of 4518
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 03:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5E-105 1E-109 915.6 86.2 722 40-787 47-772 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 6.3E-77 1.4E-81 683.1 65.3 577 37-641 145-727 (857)
3 PLN03081 pentatricopeptide (PP 100.0 3.2E-75 6.9E-80 652.7 63.5 526 143-787 83-609 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.5E-67 5.3E-72 589.1 51.1 566 42-666 85-670 (697)
5 PLN03218 maturation of RBCL 1; 100.0 8.6E-66 1.9E-70 576.2 60.9 534 76-666 367-906 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 4.2E-62 9.1E-67 546.5 61.7 534 178-741 366-915 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-39 2.7E-44 385.7 77.9 675 45-737 160-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.3E-40 1.6E-44 387.7 75.0 679 40-734 189-899 (899)
9 PRK11447 cellulose synthase su 100.0 1.7E-28 3.7E-33 289.0 69.8 646 47-734 31-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.4E-27 3.1E-32 281.3 59.7 611 82-738 31-703 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.4E-25 3E-30 251.3 62.8 642 46-737 44-742 (987)
12 PRK09782 bacteriophage N4 rece 100.0 3E-24 6.6E-29 240.6 64.3 584 91-737 56-708 (987)
13 KOG4626 O-linked N-acetylgluco 100.0 9.4E-25 2E-29 215.3 36.5 442 254-724 54-508 (966)
14 KOG2002 TPR-containing nuclear 99.9 1.9E-21 4.2E-26 202.8 54.4 668 43-738 40-801 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 5.2E-24 1.1E-28 210.1 30.1 360 367-737 116-487 (966)
16 KOG2002 TPR-containing nuclear 99.9 4.4E-21 9.6E-26 200.2 51.4 650 62-737 26-747 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 5.4E-20 1.2E-24 203.9 40.9 426 249-736 128-572 (615)
18 KOG0495 HAT repeat protein [RN 99.9 9.3E-16 2E-20 153.5 56.3 495 194-751 388-894 (913)
19 TIGR00990 3a0801s09 mitochondr 99.9 4.9E-18 1.1E-22 188.4 44.8 427 219-707 129-577 (615)
20 PRK15174 Vi polysaccharide exp 99.9 2.2E-18 4.8E-23 190.0 39.8 325 373-705 48-385 (656)
21 PRK11788 tetratricopeptide rep 99.9 2E-19 4.2E-24 189.7 30.1 304 405-742 42-354 (389)
22 PRK10049 pgaA outer membrane p 99.9 4E-18 8.6E-23 192.3 42.0 395 322-737 19-458 (765)
23 PRK15174 Vi polysaccharide exp 99.9 5E-18 1.1E-22 187.2 40.0 329 400-738 44-384 (656)
24 KOG2076 RNA polymerase III tra 99.8 7.9E-16 1.7E-20 160.5 51.5 650 50-731 145-891 (895)
25 PRK10049 pgaA outer membrane p 99.8 1.9E-17 4.1E-22 186.8 41.2 333 369-709 85-464 (765)
26 PRK11788 tetratricopeptide rep 99.8 3.4E-18 7.5E-23 180.3 33.2 296 370-700 38-346 (389)
27 PRK14574 hmsH outer membrane p 99.8 5.7E-16 1.2E-20 170.8 48.2 184 257-459 43-229 (822)
28 PRK14574 hmsH outer membrane p 99.8 5.8E-15 1.3E-19 162.9 47.2 446 222-709 39-521 (822)
29 KOG4422 Uncharacterized conser 99.8 7E-15 1.5E-19 140.0 39.0 325 40-429 112-464 (625)
30 KOG2003 TPR repeat-containing 99.8 5.8E-16 1.3E-20 148.1 31.4 275 442-721 428-709 (840)
31 KOG2076 RNA polymerase III tra 99.8 1.4E-13 3E-18 144.0 48.8 619 90-739 150-853 (895)
32 KOG0495 HAT repeat protein [RN 99.8 1.6E-12 3.4E-17 130.8 54.1 548 94-715 330-894 (913)
33 KOG4318 Bicoid mRNA stability 99.8 3.8E-14 8.3E-19 147.1 40.6 256 65-333 11-286 (1088)
34 KOG1915 Cell cycle control pro 99.7 1.7E-13 3.7E-18 132.4 36.8 436 316-780 71-541 (677)
35 KOG2003 TPR repeat-containing 99.7 3.5E-14 7.6E-19 136.1 29.1 277 327-620 428-710 (840)
36 KOG4422 Uncharacterized conser 99.7 2.9E-12 6.4E-17 122.4 38.1 320 148-498 117-463 (625)
37 KOG0547 Translocase of outer m 99.7 2.8E-13 6E-18 131.7 29.3 217 513-735 336-566 (606)
38 KOG1173 Anaphase-promoting com 99.6 1.9E-12 4.1E-17 128.6 35.5 266 466-737 242-520 (611)
39 PF13429 TPR_15: Tetratricopep 99.6 4.5E-16 9.9E-21 154.8 10.4 256 474-734 14-276 (280)
40 KOG1155 Anaphase-promoting com 99.6 4.1E-12 8.8E-17 123.0 35.4 324 396-734 162-494 (559)
41 KOG1155 Anaphase-promoting com 99.6 1.9E-12 4.1E-17 125.2 32.7 367 355-734 152-535 (559)
42 KOG1173 Anaphase-promoting com 99.6 5E-12 1.1E-16 125.7 34.7 489 195-718 29-535 (611)
43 KOG1915 Cell cycle control pro 99.6 2.2E-10 4.8E-15 111.3 43.2 425 224-704 80-539 (677)
44 PRK10747 putative protoheme IX 99.6 1.5E-12 3.3E-17 135.5 30.2 277 446-734 97-389 (398)
45 KOG1126 DNA-binding cell divis 99.6 3.3E-13 7.2E-18 136.9 23.5 281 413-738 334-623 (638)
46 KOG1126 DNA-binding cell divis 99.6 3E-13 6.5E-18 137.2 22.1 245 484-737 335-588 (638)
47 KOG4318 Bicoid mRNA stability 99.6 3.6E-11 7.9E-16 125.4 37.5 519 168-745 11-603 (1088)
48 PRK10747 putative protoheme IX 99.6 3.4E-12 7.4E-17 132.9 30.4 285 380-702 97-391 (398)
49 KOG2047 mRNA splicing factor [ 99.6 1.5E-09 3.2E-14 109.7 46.7 537 148-723 103-711 (835)
50 TIGR00540 hemY_coli hemY prote 99.5 2.3E-11 4.9E-16 127.6 34.3 283 410-734 96-398 (409)
51 KOG0547 Translocase of outer m 99.5 5.4E-11 1.2E-15 116.1 33.2 220 478-704 336-569 (606)
52 TIGR00540 hemY_coli hemY prote 99.5 9.1E-12 2E-16 130.5 30.7 254 481-737 97-368 (409)
53 KOG4162 Predicted calmodulin-b 99.5 1.4E-10 3.1E-15 119.8 37.3 367 366-736 322-784 (799)
54 COG2956 Predicted N-acetylgluc 99.5 1.8E-11 3.9E-16 113.2 25.2 311 411-756 48-368 (389)
55 PF13429 TPR_15: Tetratricopep 99.5 1.8E-13 3.9E-18 136.2 12.8 255 438-700 13-276 (280)
56 KOG1174 Anaphase-promoting com 99.5 1.8E-09 3.9E-14 103.3 35.8 296 406-709 204-508 (564)
57 TIGR02521 type_IV_pilW type IV 99.4 1.8E-11 4E-16 119.1 22.3 199 536-735 29-232 (234)
58 KOG2047 mRNA splicing factor [ 99.4 2.6E-07 5.5E-12 94.0 50.0 615 42-690 25-712 (835)
59 KOG3785 Uncharacterized conser 99.4 3.6E-09 7.8E-14 99.1 34.4 171 553-736 338-515 (557)
60 COG3071 HemY Uncharacterized e 99.4 1.2E-09 2.6E-14 104.8 31.5 288 411-733 97-388 (400)
61 KOG1174 Anaphase-promoting com 99.4 2.9E-09 6.3E-14 101.9 32.2 364 366-737 96-502 (564)
62 COG3071 HemY Uncharacterized e 99.4 1.6E-09 3.5E-14 103.9 30.6 196 396-597 185-389 (400)
63 COG2956 Predicted N-acetylgluc 99.4 7.2E-10 1.6E-14 102.8 26.8 218 378-597 46-277 (389)
64 KOG1129 TPR repeat-containing 99.4 2.4E-11 5.3E-16 112.2 17.0 235 433-737 223-460 (478)
65 KOG4162 Predicted calmodulin-b 99.4 1.4E-08 3E-13 105.4 38.3 495 159-707 239-789 (799)
66 KOG0985 Vesicle coat protein c 99.4 4.2E-07 9.2E-12 96.8 49.6 565 119-731 609-1337(1666)
67 KOG3616 Selective LIM binding 99.4 8.7E-08 1.9E-12 98.4 43.1 442 231-736 545-1025(1636)
68 KOG0985 Vesicle coat protein c 99.4 3.9E-07 8.4E-12 97.1 49.0 629 47-732 484-1246(1666)
69 KOG1840 Kinesin light chain [C 99.4 2.2E-10 4.8E-15 118.2 24.2 230 504-733 200-477 (508)
70 KOG2376 Signal recognition par 99.3 4.7E-08 1E-12 98.5 38.7 448 255-731 19-516 (652)
71 PRK12370 invasion protein regu 99.3 5.8E-10 1.3E-14 121.6 27.6 244 483-736 276-536 (553)
72 COG3063 PilF Tfp pilus assembl 99.3 1.2E-10 2.6E-15 103.0 17.4 162 571-737 37-204 (250)
73 KOG1156 N-terminal acetyltrans 99.3 9.6E-07 2.1E-11 90.3 47.3 625 52-736 15-689 (700)
74 PRK11189 lipoprotein NlpI; Pro 99.3 1.5E-10 3.3E-15 115.2 19.8 147 481-630 39-191 (296)
75 PRK12370 invasion protein regu 99.3 2.7E-10 5.8E-15 124.2 23.0 212 518-736 276-503 (553)
76 KOG3617 WD40 and TPR repeat-co 99.3 9.2E-08 2E-12 99.5 38.7 234 77-345 724-994 (1416)
77 KOG1156 N-terminal acetyltrans 99.3 9.3E-08 2E-12 97.5 37.3 431 251-737 11-470 (700)
78 KOG3785 Uncharacterized conser 99.3 1.1E-07 2.4E-12 89.5 33.4 315 410-738 163-493 (557)
79 KOG1127 TPR repeat-containing 99.3 1.7E-07 3.6E-12 100.1 38.7 627 60-714 474-1188(1238)
80 KOG1127 TPR repeat-containing 99.3 2.9E-07 6.2E-12 98.3 40.4 578 95-735 474-1104(1238)
81 KOG3616 Selective LIM binding 99.2 4.3E-06 9.2E-11 86.4 47.2 516 154-714 739-1368(1636)
82 PF12569 NARP1: NMDA receptor- 99.2 1.1E-07 2.4E-12 99.9 37.1 254 470-731 196-516 (517)
83 KOG0548 Molecular co-chaperone 99.2 1.6E-08 3.5E-13 100.8 28.3 249 471-731 227-485 (539)
84 KOG1129 TPR repeat-containing 99.2 5.6E-10 1.2E-14 103.3 16.9 157 402-563 227-383 (478)
85 TIGR02521 type_IV_pilW type IV 99.2 2.9E-09 6.3E-14 103.5 23.2 199 468-702 31-233 (234)
86 PRK11189 lipoprotein NlpI; Pro 99.2 4.3E-09 9.2E-14 104.8 23.7 149 446-596 39-192 (296)
87 KOG0548 Molecular co-chaperone 99.2 7.6E-08 1.6E-12 96.2 30.7 246 437-697 228-485 (539)
88 KOG2376 Signal recognition par 99.2 1.1E-06 2.3E-11 89.0 38.6 124 49-177 17-140 (652)
89 PF13041 PPR_2: PPR repeat fam 99.2 6.6E-11 1.4E-15 81.5 6.5 50 246-295 1-50 (50)
90 PF13041 PPR_2: PPR repeat fam 99.2 3.3E-11 7.2E-16 83.0 4.9 50 145-194 1-50 (50)
91 KOG1840 Kinesin light chain [C 99.2 8.4E-09 1.8E-13 106.7 23.5 161 540-700 285-478 (508)
92 COG3063 PilF Tfp pilus assembl 99.2 1.2E-08 2.5E-13 90.6 20.7 197 507-707 39-242 (250)
93 KOG0624 dsRNA-activated protei 99.1 2.4E-07 5.3E-12 86.9 29.9 310 370-710 41-379 (504)
94 KOG1125 TPR repeat-containing 99.1 1.3E-09 2.8E-14 109.5 16.0 220 514-736 296-528 (579)
95 KOG0624 dsRNA-activated protei 99.1 2.5E-07 5.5E-12 86.7 29.0 288 439-736 44-371 (504)
96 KOG3617 WD40 and TPR repeat-co 99.1 1.2E-05 2.5E-10 84.4 41.3 547 115-737 725-1361(1416)
97 cd05804 StaR_like StaR_like; a 99.0 1.2E-06 2.7E-11 91.0 31.4 60 677-736 269-337 (355)
98 PF12569 NARP1: NMDA receptor- 99.0 1.2E-07 2.5E-12 99.8 22.9 147 588-737 130-293 (517)
99 PRK04841 transcriptional regul 98.9 1.9E-06 4.1E-11 101.9 34.6 368 369-736 343-761 (903)
100 PF04733 Coatomer_E: Coatomer 98.9 1.3E-07 2.8E-12 92.5 19.6 225 471-706 38-270 (290)
101 cd05804 StaR_like StaR_like; a 98.9 6.1E-06 1.3E-10 85.8 32.7 298 399-702 7-337 (355)
102 KOG4340 Uncharacterized conser 98.9 4.5E-06 9.7E-11 77.0 26.9 320 220-594 13-371 (459)
103 TIGR03302 OM_YfiO outer membra 98.9 1.7E-07 3.7E-12 90.7 19.3 181 536-736 31-233 (235)
104 KOG4340 Uncharacterized conser 98.9 2.7E-06 5.8E-11 78.5 25.2 419 278-734 5-442 (459)
105 PF04733 Coatomer_E: Coatomer 98.9 9E-08 1.9E-12 93.7 16.8 246 476-736 9-266 (290)
106 KOG1070 rRNA processing protei 98.9 2.1E-07 4.6E-12 102.7 20.2 210 524-738 1445-1666(1710)
107 PRK04841 transcriptional regul 98.8 0.00042 9.2E-09 82.1 50.2 367 321-705 344-764 (903)
108 PRK10370 formate-dependent nit 98.8 2.2E-07 4.8E-12 85.8 16.5 149 576-738 23-176 (198)
109 PRK15359 type III secretion sy 98.8 7.1E-08 1.5E-12 84.1 12.0 94 643-736 27-122 (144)
110 PRK15359 type III secretion sy 98.8 1.7E-07 3.7E-12 81.8 13.2 123 589-718 13-138 (144)
111 PRK15179 Vi polysaccharide bio 98.8 5.9E-07 1.3E-11 98.3 20.2 133 600-735 82-217 (694)
112 KOG1125 TPR repeat-containing 98.7 5.8E-07 1.2E-11 90.9 17.5 243 479-726 296-562 (579)
113 PLN02789 farnesyltranstransfer 98.7 4.4E-06 9.5E-11 83.0 22.5 198 518-719 52-268 (320)
114 PRK15363 pathogenicity island 98.7 2.3E-07 4.9E-12 78.9 10.7 97 640-736 35-133 (157)
115 KOG1128 Uncharacterized conser 98.6 2.7E-06 5.9E-11 88.4 19.5 219 364-598 395-616 (777)
116 KOG1128 Uncharacterized conser 98.6 1E-06 2.3E-11 91.4 16.0 218 500-736 395-617 (777)
117 COG5010 TadD Flp pilus assembl 98.6 4E-06 8.7E-11 76.7 16.1 90 645-734 105-196 (257)
118 TIGR03302 OM_YfiO outer membra 98.5 4.9E-06 1.1E-10 80.6 18.0 183 501-704 31-235 (235)
119 TIGR02552 LcrH_SycD type III s 98.5 1.1E-06 2.3E-11 76.7 11.6 108 626-736 5-115 (135)
120 PRK10370 formate-dependent nit 98.5 6.4E-06 1.4E-10 76.1 17.2 153 545-709 23-181 (198)
121 KOG1070 rRNA processing protei 98.5 1.6E-05 3.4E-10 88.6 22.5 226 502-731 1457-1696(1710)
122 COG5010 TadD Flp pilus assembl 98.5 7.9E-06 1.7E-10 74.8 17.0 152 575-729 72-225 (257)
123 PLN02789 farnesyltranstransfer 98.5 7.6E-05 1.7E-09 74.3 24.9 222 480-708 49-309 (320)
124 PRK14720 transcript cleavage f 98.5 3.4E-05 7.4E-10 85.4 24.3 44 674-717 225-268 (906)
125 COG4783 Putative Zn-dependent 98.4 4.3E-05 9.3E-10 76.3 21.3 149 571-741 308-460 (484)
126 KOG2053 Mitochondrial inherita 98.4 0.0035 7.7E-08 67.6 36.1 221 129-354 22-262 (932)
127 PF12854 PPR_1: PPR repeat 98.4 3.3E-07 7.2E-12 56.2 3.7 32 463-494 2-33 (34)
128 KOG3060 Uncharacterized conser 98.4 7E-05 1.5E-09 68.0 19.7 196 482-712 26-231 (289)
129 KOG2053 Mitochondrial inherita 98.4 0.0057 1.2E-07 66.1 37.4 158 436-596 439-606 (932)
130 PF12854 PPR_1: PPR repeat 98.4 6.8E-07 1.5E-11 54.9 4.2 34 427-460 1-34 (34)
131 KOG3060 Uncharacterized conser 98.3 3.6E-05 7.8E-10 69.8 16.3 163 572-738 55-223 (289)
132 KOG3081 Vesicle coat complex C 98.3 0.00027 5.8E-09 64.9 21.8 121 539-666 109-233 (299)
133 KOG1914 mRNA cleavage and poly 98.3 0.0065 1.4E-07 61.8 38.6 172 484-656 347-526 (656)
134 PRK14720 transcript cleavage f 98.3 0.00028 6.1E-09 78.4 25.3 58 400-459 118-175 (906)
135 COG4783 Putative Zn-dependent 98.3 6.2E-05 1.4E-09 75.2 18.1 121 613-736 315-438 (484)
136 PF13414 TPR_11: TPR repeat; P 98.3 2E-06 4.2E-11 64.4 6.1 66 671-736 2-68 (69)
137 TIGR02552 LcrH_SycD type III s 98.2 2.2E-05 4.7E-10 68.3 13.0 115 591-709 5-122 (135)
138 PRK15179 Vi polysaccharide bio 98.2 0.0002 4.3E-09 78.9 23.0 208 400-630 30-242 (694)
139 KOG0550 Molecular chaperone (D 98.2 2.2E-05 4.7E-10 76.3 13.5 272 438-736 54-351 (486)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.1E-05 4.7E-10 79.6 13.9 119 610-733 175-295 (395)
141 KOG0553 TPR repeat-containing 98.2 1.2E-05 2.7E-10 75.1 10.2 107 614-723 91-200 (304)
142 PF09976 TPR_21: Tetratricopep 98.2 3.4E-05 7.4E-10 67.7 12.5 115 617-732 24-144 (145)
143 PF13432 TPR_16: Tetratricopep 98.2 4.4E-06 9.5E-11 61.5 5.9 61 677-737 2-62 (65)
144 KOG3081 Vesicle coat complex C 98.2 0.0018 3.8E-08 59.7 23.1 153 375-534 116-273 (299)
145 KOG1130 Predicted G-alpha GTPa 98.2 9.8E-06 2.1E-10 78.3 9.3 281 442-734 26-343 (639)
146 TIGR02795 tol_pal_ybgF tol-pal 98.1 2.7E-05 5.8E-10 66.0 11.1 96 642-737 4-107 (119)
147 COG3898 Uncharacterized membra 98.1 0.0094 2E-07 58.1 28.1 275 446-735 97-392 (531)
148 PF12895 Apc3: Anaphase-promot 98.1 3.4E-06 7.4E-11 65.9 4.5 78 653-731 2-83 (84)
149 cd00189 TPR Tetratricopeptide 98.1 2.8E-05 6.1E-10 62.7 10.0 94 643-736 3-98 (100)
150 PF09976 TPR_21: Tetratricopep 98.0 0.00024 5.1E-09 62.4 15.0 123 572-699 15-145 (145)
151 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.2E-10 50.7 4.2 35 148-182 1-35 (35)
152 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00025 5.5E-09 72.0 16.0 124 437-566 173-296 (395)
153 COG4235 Cytochrome c biogenesi 98.0 8.9E-05 1.9E-09 70.1 11.8 105 637-741 153-262 (287)
154 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.8E-10 50.2 4.5 35 249-283 1-35 (35)
155 PLN03088 SGT1, suppressor of 98.0 5.7E-05 1.2E-09 77.2 11.5 107 610-719 8-117 (356)
156 PRK15331 chaperone protein Sic 98.0 6.3E-05 1.4E-09 64.5 9.6 100 635-734 31-133 (165)
157 PRK02603 photosystem I assembl 97.9 7.9E-05 1.7E-09 67.7 10.5 96 641-736 36-150 (172)
158 KOG0553 TPR repeat-containing 97.9 3.7E-05 8E-10 72.0 8.1 91 647-737 88-180 (304)
159 PF07079 DUF1347: Protein of u 97.9 0.032 6.8E-07 55.8 34.6 71 661-732 445-521 (549)
160 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00013 2.9E-09 61.6 11.0 104 607-710 5-114 (119)
161 KOG1914 mRNA cleavage and poly 97.9 0.04 8.7E-07 56.3 40.3 210 519-732 309-536 (656)
162 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4.1E-10 49.0 3.9 34 147-180 1-34 (34)
163 PF13812 PPR_3: Pentatricopept 97.9 2.6E-05 5.6E-10 48.4 4.5 34 248-281 1-34 (34)
164 PF13371 TPR_9: Tetratricopept 97.9 4.6E-05 9.9E-10 57.7 6.5 59 679-737 2-60 (73)
165 PLN03088 SGT1, suppressor of 97.8 0.00018 3.8E-09 73.6 12.4 98 574-675 7-106 (356)
166 CHL00033 ycf3 photosystem I as 97.8 0.00012 2.7E-09 66.2 10.1 93 640-732 35-139 (168)
167 PF07079 DUF1347: Protein of u 97.8 0.045 9.8E-07 54.8 36.6 195 468-668 298-523 (549)
168 PF14559 TPR_19: Tetratricopep 97.8 2.3E-05 5E-10 58.3 4.1 54 683-736 2-55 (68)
169 PRK10153 DNA-binding transcrip 97.8 0.00088 1.9E-08 71.6 17.0 63 673-736 421-483 (517)
170 KOG0550 Molecular chaperone (D 97.7 0.0068 1.5E-07 59.6 20.4 214 512-729 178-437 (486)
171 PRK02603 photosystem I assembl 97.7 0.00069 1.5E-08 61.5 13.4 128 570-721 36-166 (172)
172 PF13432 TPR_16: Tetratricopep 97.7 7.5E-05 1.6E-09 54.9 5.8 61 646-706 3-65 (65)
173 PRK10866 outer membrane biogen 97.7 0.0022 4.9E-08 61.4 17.3 180 537-733 31-239 (243)
174 COG4700 Uncharacterized protei 97.7 0.0035 7.7E-08 54.3 16.2 133 600-735 85-222 (251)
175 PRK15363 pathogenicity island 97.7 0.0013 2.7E-08 56.5 13.2 92 570-666 36-129 (157)
176 COG4700 Uncharacterized protei 97.7 0.00081 1.8E-08 58.1 11.9 111 627-737 76-191 (251)
177 PF13431 TPR_17: Tetratricopep 97.7 2.4E-05 5.3E-10 47.9 2.0 34 694-727 1-34 (34)
178 PRK10153 DNA-binding transcrip 97.7 0.001 2.2E-08 71.1 15.5 143 563-707 331-488 (517)
179 PF12895 Apc3: Anaphase-promot 97.7 9E-05 2E-09 57.8 5.3 79 582-664 2-82 (84)
180 PF14938 SNAP: Soluble NSF att 97.6 0.0023 4.9E-08 63.4 16.5 142 575-731 100-262 (282)
181 PF01535 PPR: PPR repeat; Int 97.6 7.4E-05 1.6E-09 45.1 3.4 31 148-178 1-31 (31)
182 cd00189 TPR Tetratricopeptide 97.6 0.00069 1.5E-08 54.3 9.8 61 643-703 37-99 (100)
183 PF12688 TPR_5: Tetratrico pep 97.5 0.00082 1.8E-08 55.6 9.7 89 645-733 6-102 (120)
184 CHL00033 ycf3 photosystem I as 97.5 0.0027 5.9E-08 57.4 14.2 78 571-651 37-117 (168)
185 PRK10803 tol-pal system protei 97.5 0.00057 1.2E-08 65.8 10.1 88 649-736 152-247 (263)
186 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.6E-09 44.1 3.5 31 249-279 1-31 (31)
187 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00043 9.3E-09 69.8 8.7 67 670-736 73-142 (453)
188 KOG2041 WD40 repeat protein [G 97.5 0.074 1.6E-06 56.0 24.3 156 230-423 747-903 (1189)
189 PF14559 TPR_19: Tetratricopep 97.5 0.00016 3.4E-09 53.8 4.2 62 652-713 3-66 (68)
190 PF13414 TPR_11: TPR repeat; P 97.4 0.00027 5.8E-09 52.7 5.3 64 640-703 3-69 (69)
191 PF13428 TPR_14: Tetratricopep 97.4 0.00022 4.8E-09 47.1 4.2 42 673-714 2-43 (44)
192 PF10037 MRP-S27: Mitochondria 97.4 0.002 4.3E-08 65.9 12.8 125 357-481 56-186 (429)
193 KOG0543 FKBP-type peptidyl-pro 97.4 0.0012 2.6E-08 65.0 10.3 64 673-736 258-321 (397)
194 PF13525 YfiO: Outer membrane 97.3 0.0096 2.1E-07 55.6 15.0 169 539-726 6-198 (203)
195 PF10037 MRP-S27: Mitochondria 97.3 0.0032 7E-08 64.4 12.4 120 397-516 65-186 (429)
196 PF12688 TPR_5: Tetratrico pep 97.3 0.0069 1.5E-07 50.1 12.0 90 474-563 7-100 (120)
197 PRK10866 outer membrane biogen 97.2 0.065 1.4E-06 51.4 20.1 54 611-664 182-236 (243)
198 PF14938 SNAP: Soluble NSF att 97.2 0.017 3.7E-07 57.2 16.8 133 438-570 119-269 (282)
199 PF05843 Suf: Suppressor of fo 97.2 0.0058 1.3E-07 60.3 13.3 134 571-707 3-142 (280)
200 KOG1585 Protein required for f 97.2 0.041 9E-07 50.2 16.9 138 575-729 97-250 (308)
201 PRK10803 tol-pal system protei 97.2 0.006 1.3E-07 58.9 12.7 93 615-707 154-252 (263)
202 KOG0543 FKBP-type peptidyl-pro 97.2 0.0027 5.9E-08 62.6 10.2 96 641-736 258-356 (397)
203 PF08579 RPM2: Mitochondrial r 97.2 0.006 1.3E-07 48.4 9.9 77 402-478 29-114 (120)
204 PF13424 TPR_12: Tetratricopep 97.2 0.00063 1.4E-08 52.1 4.5 62 673-734 6-74 (78)
205 PF13281 DUF4071: Domain of un 97.1 0.056 1.2E-06 54.3 18.9 121 582-705 195-338 (374)
206 KOG1130 Predicted G-alpha GTPa 97.1 0.008 1.7E-07 58.9 12.5 126 470-595 197-341 (639)
207 PF06239 ECSIT: Evolutionarily 97.1 0.0045 9.7E-08 55.8 9.7 113 387-518 34-153 (228)
208 KOG2796 Uncharacterized conser 97.1 0.046 9.9E-07 50.5 15.9 134 572-705 180-319 (366)
209 PF08579 RPM2: Mitochondrial r 97.1 0.0063 1.4E-07 48.3 9.1 79 437-515 29-116 (120)
210 PF13371 TPR_9: Tetratricopept 97.1 0.0019 4.2E-08 48.6 6.4 66 647-712 2-69 (73)
211 PF05843 Suf: Suppressor of fo 97.1 0.012 2.5E-07 58.1 13.4 138 470-611 3-147 (280)
212 PRK11906 transcriptional regul 97.0 0.009 2E-07 60.7 12.2 142 585-730 274-431 (458)
213 KOG2041 WD40 repeat protein [G 97.0 0.64 1.4E-05 49.4 27.8 124 331-491 747-875 (1189)
214 KOG1538 Uncharacterized conser 97.0 0.13 2.8E-06 53.8 20.3 180 205-462 623-802 (1081)
215 KOG1538 Uncharacterized conser 97.0 0.23 5E-06 52.0 21.8 92 475-597 754-845 (1081)
216 PF04840 Vps16_C: Vps16, C-ter 97.0 0.5 1.1E-05 47.2 29.5 105 572-694 180-284 (319)
217 KOG4555 TPR repeat-containing 96.9 0.0063 1.4E-07 49.3 8.3 91 647-737 50-146 (175)
218 PF03704 BTAD: Bacterial trans 96.9 0.015 3.2E-07 51.2 11.8 60 674-733 64-123 (146)
219 KOG1941 Acetylcholine receptor 96.9 0.049 1.1E-06 52.7 15.5 153 408-560 16-184 (518)
220 COG3898 Uncharacterized membra 96.9 0.5 1.1E-05 46.6 28.4 275 380-666 97-389 (531)
221 PF06239 ECSIT: Evolutionarily 96.9 0.012 2.5E-07 53.2 10.6 105 430-553 44-153 (228)
222 PF13525 YfiO: Outer membrane 96.9 0.037 8E-07 51.7 14.4 144 571-735 7-170 (203)
223 COG0457 NrfG FOG: TPR repeat [ 96.8 0.5 1.1E-05 45.4 26.7 195 538-736 59-266 (291)
224 KOG2280 Vacuolar assembly/sort 96.8 0.98 2.1E-05 48.7 33.6 134 277-427 426-575 (829)
225 PF13512 TPR_18: Tetratricopep 96.8 0.021 4.6E-07 48.2 10.9 92 645-736 15-129 (142)
226 PF13424 TPR_12: Tetratricopep 96.8 0.0019 4.2E-08 49.4 4.3 60 642-701 7-75 (78)
227 COG4235 Cytochrome c biogenesi 96.7 0.047 1E-06 52.1 13.3 102 601-705 153-260 (287)
228 KOG4234 TPR repeat-containing 96.6 0.014 3E-07 51.3 8.6 91 647-737 102-199 (271)
229 KOG1941 Acetylcholine receptor 96.6 0.03 6.5E-07 54.1 11.2 121 611-731 129-271 (518)
230 KOG2796 Uncharacterized conser 96.5 0.7 1.5E-05 43.0 20.4 134 471-606 180-321 (366)
231 COG0457 NrfG FOG: TPR repeat [ 96.4 0.97 2.1E-05 43.3 27.3 196 504-704 60-268 (291)
232 KOG2280 Vacuolar assembly/sort 96.3 2.1 4.6E-05 46.3 27.3 47 472-522 688-734 (829)
233 PRK15331 chaperone protein Sic 96.3 0.084 1.8E-06 45.8 11.5 93 576-671 44-136 (165)
234 COG3118 Thioredoxin domain-con 96.3 0.46 9.9E-06 45.4 17.1 33 700-732 230-262 (304)
235 COG1729 Uncharacterized protei 96.2 0.037 8E-07 52.1 9.8 32 674-705 217-248 (262)
236 COG4105 ComL DNA uptake lipopr 96.2 1.1 2.5E-05 42.0 19.6 176 540-734 36-232 (254)
237 PF00515 TPR_1: Tetratricopept 96.1 0.0099 2.2E-07 36.5 3.9 32 673-704 2-33 (34)
238 COG1729 Uncharacterized protei 96.1 0.059 1.3E-06 50.8 10.4 88 648-737 149-246 (262)
239 PRK11906 transcriptional regul 96.1 0.28 6.2E-06 50.2 15.8 113 583-700 318-435 (458)
240 PF07719 TPR_2: Tetratricopept 96.1 0.015 3.3E-07 35.6 4.6 33 673-705 2-34 (34)
241 PF13512 TPR_18: Tetratricopep 96.1 0.13 2.8E-06 43.5 11.3 117 575-708 16-135 (142)
242 PF13281 DUF4071: Domain of un 96.0 1.2 2.6E-05 45.1 19.8 77 402-478 145-227 (374)
243 PF10300 DUF3808: Protein of u 96.0 0.26 5.6E-06 52.6 16.4 161 572-735 191-376 (468)
244 PF09205 DUF1955: Domain of un 96.0 0.33 7.2E-06 39.9 12.6 140 580-738 13-152 (161)
245 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.041 8.8E-07 56.0 9.0 62 640-701 75-141 (453)
246 COG5107 RNA14 Pre-mRNA 3'-end 95.8 2.6 5.5E-05 42.8 32.6 125 471-597 400-530 (660)
247 KOG0890 Protein kinase of the 95.8 2.8 6.1E-05 51.7 24.3 315 403-738 1388-1734(2382)
248 COG3118 Thioredoxin domain-con 95.8 1.1 2.4E-05 42.9 17.2 120 510-633 141-265 (304)
249 COG4105 ComL DNA uptake lipopr 95.6 1.1 2.3E-05 42.2 16.3 47 689-735 133-196 (254)
250 KOG2610 Uncharacterized conser 95.6 0.29 6.4E-06 47.1 12.9 144 550-698 115-273 (491)
251 PF04184 ST7: ST7 protein; In 95.6 0.76 1.6E-05 47.3 16.4 57 574-630 264-321 (539)
252 PF02259 FAT: FAT domain; Int 95.5 2 4.3E-05 44.4 20.3 150 568-719 145-305 (352)
253 PF10300 DUF3808: Protein of u 95.2 0.92 2E-05 48.5 16.8 117 582-700 246-375 (468)
254 KOG4555 TPR repeat-containing 95.2 0.1 2.2E-06 42.6 7.1 92 614-708 53-151 (175)
255 COG4785 NlpI Lipoprotein NlpI, 95.2 0.86 1.9E-05 41.2 13.4 32 706-737 237-268 (297)
256 COG5107 RNA14 Pre-mRNA 3'-end 95.2 4.3 9.3E-05 41.3 34.0 93 32-129 30-122 (660)
257 PF04840 Vps16_C: Vps16, C-ter 95.1 4 8.7E-05 40.9 31.2 22 221-242 4-25 (319)
258 KOG1550 Extracellular protein 95.1 4.8 0.0001 44.3 22.3 280 414-736 228-539 (552)
259 PRK11619 lytic murein transgly 95.0 7.5 0.00016 43.4 31.8 54 440-498 106-159 (644)
260 PF03704 BTAD: Bacterial trans 95.0 0.18 3.9E-06 44.2 9.2 71 572-643 65-139 (146)
261 KOG1258 mRNA processing protei 95.0 6 0.00013 42.0 32.7 179 538-720 297-489 (577)
262 PF08631 SPO22: Meiosis protei 94.9 4.3 9.2E-05 40.1 21.9 18 682-699 256-273 (278)
263 KOG2114 Vacuolar assembly/sort 94.9 7.5 0.00016 43.0 26.3 53 542-594 709-761 (933)
264 KOG3941 Intermediate in Toll s 94.9 0.22 4.7E-06 46.7 9.3 112 387-517 54-172 (406)
265 KOG3364 Membrane protein invol 94.7 0.37 8E-06 39.9 9.1 68 669-736 29-101 (149)
266 COG2976 Uncharacterized protei 94.6 1.4 3E-05 39.4 13.2 114 587-704 70-191 (207)
267 PF04053 Coatomer_WDAD: Coatom 94.5 0.7 1.5E-05 48.6 13.3 44 651-697 329-372 (443)
268 PF13176 TPR_7: Tetratricopept 94.3 0.08 1.7E-06 32.9 3.8 26 708-733 1-26 (36)
269 PF13181 TPR_8: Tetratricopept 94.3 0.08 1.7E-06 32.3 3.8 31 674-704 3-33 (34)
270 KOG1920 IkappaB kinase complex 94.2 14 0.0003 42.8 25.4 51 644-699 1003-1053(1265)
271 PF13428 TPR_14: Tetratricopep 94.1 0.095 2.1E-06 34.4 4.0 33 706-738 1-33 (44)
272 PF13176 TPR_7: Tetratricopept 94.1 0.083 1.8E-06 32.8 3.5 28 674-701 1-28 (36)
273 PF12921 ATP13: Mitochondrial 94.0 0.56 1.2E-05 39.4 9.3 48 246-293 50-98 (126)
274 smart00299 CLH Clathrin heavy 93.9 1.9 4E-05 37.4 13.0 43 438-481 12-54 (140)
275 PF04184 ST7: ST7 protein; In 93.9 1.5 3.3E-05 45.2 13.6 54 645-698 264-321 (539)
276 PF12921 ATP13: Mitochondrial 93.8 0.67 1.5E-05 38.9 9.5 47 430-476 49-96 (126)
277 KOG2066 Vacuolar assembly/sort 93.8 13 0.00027 41.0 26.8 79 325-416 363-441 (846)
278 KOG4648 Uncharacterized conser 93.8 0.13 2.7E-06 49.6 5.6 109 610-725 103-214 (536)
279 PF04097 Nic96: Nup93/Nic96; 93.7 7 0.00015 43.6 19.9 63 121-183 116-188 (613)
280 KOG2610 Uncharacterized conser 93.6 0.58 1.3E-05 45.2 9.6 161 579-742 113-283 (491)
281 KOG1585 Protein required for f 93.6 6.1 0.00013 36.8 16.1 56 607-663 193-250 (308)
282 KOG1258 mRNA processing protei 93.6 12 0.00026 39.9 32.0 129 146-277 44-180 (577)
283 PRK10941 hypothetical protein; 93.5 0.6 1.3E-05 45.2 9.9 83 674-779 183-265 (269)
284 KOG4648 Uncharacterized conser 93.4 0.26 5.6E-06 47.5 7.0 93 575-672 103-198 (536)
285 PF04053 Coatomer_WDAD: Coatom 93.4 1.9 4E-05 45.5 14.0 132 468-628 295-426 (443)
286 KOG1586 Protein required for f 93.4 6.4 0.00014 36.4 15.1 99 618-716 128-241 (288)
287 smart00299 CLH Clathrin heavy 93.1 5.2 0.00011 34.5 14.8 46 250-296 9-54 (140)
288 PF07719 TPR_2: Tetratricopept 93.1 0.14 3E-06 31.2 3.3 31 707-737 2-32 (34)
289 COG4649 Uncharacterized protei 93.0 5.8 0.00013 34.7 15.0 122 579-700 68-195 (221)
290 KOG2114 Vacuolar assembly/sort 92.9 18 0.00039 40.2 28.3 101 352-460 416-517 (933)
291 PF06552 TOM20_plant: Plant sp 92.8 0.21 4.6E-06 43.9 5.0 32 689-720 52-83 (186)
292 KOG2396 HAT (Half-A-TPR) repea 92.8 14 0.0003 38.5 31.8 66 146-212 104-170 (568)
293 KOG1464 COP9 signalosome, subu 92.7 8.9 0.00019 36.1 20.3 108 571-683 193-315 (440)
294 PF00515 TPR_1: Tetratricopept 92.6 0.16 3.6E-06 30.9 3.2 31 707-737 2-32 (34)
295 PF13431 TPR_17: Tetratricopep 92.6 0.15 3.3E-06 31.1 2.9 32 526-558 2-33 (34)
296 KOG3941 Intermediate in Toll s 92.5 1.4 3E-05 41.6 10.1 88 42-131 65-173 (406)
297 KOG1920 IkappaB kinase complex 92.5 26 0.00056 40.8 25.4 111 540-667 941-1053(1265)
298 PF09613 HrpB1_HrpK: Bacterial 92.4 3.7 7.9E-05 35.8 11.9 88 614-704 20-109 (160)
299 COG4785 NlpI Lipoprotein NlpI, 92.4 8.6 0.00019 35.1 18.3 182 513-703 75-268 (297)
300 PF09613 HrpB1_HrpK: Bacterial 92.3 4.1 8.9E-05 35.5 12.0 50 516-566 23-72 (160)
301 COG2976 Uncharacterized protei 92.2 7.5 0.00016 35.0 13.6 88 512-599 98-189 (207)
302 KOG1586 Protein required for f 92.0 3.2 6.8E-05 38.3 11.4 93 644-736 117-225 (288)
303 PF02259 FAT: FAT domain; Int 92.0 5.9 0.00013 40.9 15.9 67 670-736 144-214 (352)
304 PF09205 DUF1955: Domain of un 91.8 6.8 0.00015 32.6 14.2 55 545-599 93-150 (161)
305 KOG0890 Protein kinase of the 91.8 45 0.00099 42.1 32.3 109 605-717 1671-1800(2382)
306 PF13174 TPR_6: Tetratricopept 91.6 0.36 7.9E-06 29.0 3.9 28 677-704 5-32 (33)
307 PF08631 SPO22: Meiosis protei 91.1 17 0.00037 35.9 24.5 155 378-534 4-188 (278)
308 KOG0545 Aryl-hydrocarbon recep 91.0 1.7 3.7E-05 40.2 8.8 62 675-736 233-294 (329)
309 COG3629 DnrI DNA-binding trans 91.0 1.1 2.4E-05 43.3 8.1 61 674-734 155-215 (280)
310 KOG4234 TPR repeat-containing 90.6 2.1 4.6E-05 38.2 8.7 101 614-716 105-212 (271)
311 TIGR02561 HrpB1_HrpK type III 90.4 1.6 3.4E-05 37.2 7.5 69 653-721 23-93 (153)
312 PF13174 TPR_6: Tetratricopept 90.2 0.3 6.5E-06 29.4 2.5 29 708-736 2-30 (33)
313 PF00637 Clathrin: Region in C 89.9 0.098 2.1E-06 45.7 0.1 85 84-173 12-96 (143)
314 PF07721 TPR_4: Tetratricopept 89.8 0.42 9.1E-06 27.0 2.7 24 707-730 2-25 (26)
315 PF00637 Clathrin: Region in C 89.8 0.18 3.8E-06 44.1 1.7 56 289-344 13-68 (143)
316 PF09986 DUF2225: Uncharacteri 89.7 1.7 3.7E-05 40.6 8.1 64 673-736 119-195 (214)
317 KOG1308 Hsp70-interacting prot 89.7 0.29 6.2E-06 47.5 3.0 91 652-742 126-218 (377)
318 PF13181 TPR_8: Tetratricopept 89.7 0.66 1.4E-05 28.1 3.8 30 707-736 2-31 (34)
319 COG4649 Uncharacterized protei 89.6 14 0.0003 32.5 14.4 120 479-598 69-196 (221)
320 PF14853 Fis1_TPR_C: Fis1 C-te 89.5 2.2 4.7E-05 29.2 6.4 29 708-736 3-31 (53)
321 PF07035 Mic1: Colon cancer-as 89.5 14 0.00031 32.7 15.8 54 453-510 14-67 (167)
322 PF04097 Nic96: Nup93/Nic96; 89.5 40 0.00087 37.7 21.5 39 223-261 117-158 (613)
323 PF06552 TOM20_plant: Plant sp 89.3 2.6 5.7E-05 37.3 8.2 87 621-738 52-139 (186)
324 PF07035 Mic1: Colon cancer-as 89.2 15 0.00033 32.5 13.8 53 403-459 94-146 (167)
325 PF13374 TPR_10: Tetratricopep 89.0 0.88 1.9E-05 29.1 4.2 27 674-700 4-30 (42)
326 KOG2396 HAT (Half-A-TPR) repea 88.6 34 0.00074 35.8 30.6 100 430-531 456-558 (568)
327 PRK09687 putative lyase; Provi 88.6 27 0.00058 34.5 25.9 46 467-514 67-116 (280)
328 smart00028 TPR Tetratricopepti 88.5 0.87 1.9E-05 26.6 3.8 30 675-704 4-33 (34)
329 KOG4642 Chaperone-dependent E3 88.2 1.2 2.7E-05 40.9 5.7 85 613-700 19-106 (284)
330 PF10602 RPN7: 26S proteasome 88.1 4.9 0.00011 36.3 9.7 96 571-666 38-139 (177)
331 PF13374 TPR_10: Tetratricopep 88.1 0.89 1.9E-05 29.1 3.8 30 707-736 3-32 (42)
332 PF10345 Cohesin_load: Cohesin 88.1 50 0.0011 37.1 37.9 183 302-494 40-251 (608)
333 COG3629 DnrI DNA-binding trans 87.9 3.9 8.5E-05 39.6 9.3 57 540-596 155-214 (280)
334 PF14853 Fis1_TPR_C: Fis1 C-te 87.9 1.8 4E-05 29.6 5.1 35 676-710 5-39 (53)
335 KOG1550 Extracellular protein 87.4 51 0.0011 36.4 22.5 145 383-534 228-395 (552)
336 KOG1464 COP9 signalosome, subu 87.1 11 0.00024 35.5 11.2 176 553-728 42-253 (440)
337 PF10602 RPN7: 26S proteasome 86.8 4.2 9.1E-05 36.8 8.5 93 640-732 36-139 (177)
338 PF11207 DUF2989: Protein of u 86.4 3.9 8.4E-05 37.1 7.8 71 656-726 122-198 (203)
339 KOG2471 TPR repeat-containing 86.2 46 0.001 34.7 16.5 107 542-650 244-379 (696)
340 PF14561 TPR_20: Tetratricopep 85.9 2.1 4.6E-05 33.4 5.3 49 673-721 23-73 (90)
341 COG1747 Uncharacterized N-term 85.8 50 0.0011 34.7 21.2 160 466-632 64-233 (711)
342 TIGR02561 HrpB1_HrpK type III 85.8 22 0.00048 30.6 11.8 52 516-568 23-74 (153)
343 PF04190 DUF410: Protein of un 85.2 38 0.00083 32.9 17.7 82 535-633 87-170 (260)
344 COG0790 FOG: TPR repeat, SEL1 85.0 43 0.00094 33.3 18.3 77 658-737 173-268 (292)
345 PF13170 DUF4003: Protein of u 84.9 34 0.00073 34.0 14.4 133 414-548 78-227 (297)
346 TIGR03504 FimV_Cterm FimV C-te 84.8 1.7 3.7E-05 28.3 3.6 27 710-736 3-29 (44)
347 PRK12798 chemotaxis protein; R 84.7 51 0.0011 33.9 22.1 153 550-704 124-289 (421)
348 KOG0551 Hsp90 co-chaperone CNS 84.6 3.9 8.5E-05 39.8 7.3 92 641-732 82-179 (390)
349 PRK15180 Vi polysaccharide bio 84.5 15 0.00033 37.7 11.6 120 581-704 301-423 (831)
350 KOG0276 Vesicle coat complex C 83.8 20 0.00042 38.3 12.3 149 550-731 598-746 (794)
351 KOG4507 Uncharacterized conser 83.8 3.9 8.5E-05 43.0 7.4 99 616-717 619-721 (886)
352 COG3947 Response regulator con 83.3 46 0.00099 32.2 14.4 58 540-597 281-341 (361)
353 COG4976 Predicted methyltransf 83.2 2.1 4.6E-05 39.2 4.7 58 682-739 5-62 (287)
354 KOG2066 Vacuolar assembly/sort 82.9 84 0.0018 35.0 28.0 24 438-461 510-533 (846)
355 COG3947 Response regulator con 82.6 5.1 0.00011 38.3 7.0 61 674-734 281-341 (361)
356 KOG2471 TPR repeat-containing 81.9 17 0.00036 37.7 10.8 107 614-720 250-383 (696)
357 COG4455 ImpE Protein of avirul 81.8 5.3 0.00012 36.4 6.6 63 644-706 5-69 (273)
358 PRK09687 putative lyase; Provi 81.7 57 0.0012 32.2 28.6 58 567-631 204-261 (280)
359 COG1747 Uncharacterized N-term 81.3 77 0.0017 33.4 21.4 175 430-612 63-247 (711)
360 PF13170 DUF4003: Protein of u 81.1 62 0.0013 32.2 17.8 64 586-650 160-227 (297)
361 smart00028 TPR Tetratricopepti 80.9 2.6 5.6E-05 24.4 3.4 30 707-736 2-31 (34)
362 KOG0376 Serine-threonine phosp 80.8 1.6 3.5E-05 44.7 3.5 99 611-712 11-112 (476)
363 PF14561 TPR_20: Tetratricopep 80.8 14 0.0003 28.9 8.0 80 692-774 8-87 (90)
364 smart00386 HAT HAT (Half-A-TPR 79.8 3.6 7.8E-05 24.3 3.7 30 686-715 1-30 (33)
365 TIGR02508 type_III_yscG type I 79.8 27 0.00059 27.5 8.8 85 519-607 21-105 (115)
366 KOG4279 Serine/threonine prote 79.7 90 0.002 34.5 15.6 205 451-705 181-399 (1226)
367 PF14432 DYW_deaminase: DYW fa 79.4 1.5 3.3E-05 36.2 2.4 25 742-770 2-26 (116)
368 KOG3824 Huntingtin interacting 79.2 8.4 0.00018 37.0 7.3 78 682-771 126-203 (472)
369 COG4455 ImpE Protein of avirul 79.0 54 0.0012 30.3 11.8 124 572-706 4-139 (273)
370 TIGR02508 type_III_yscG type I 78.9 27 0.00059 27.5 8.5 86 197-286 20-105 (115)
371 PF07721 TPR_4: Tetratricopept 78.6 3.8 8.2E-05 23.0 3.2 19 645-663 6-24 (26)
372 KOG4570 Uncharacterized conser 78.0 20 0.00043 34.9 9.3 101 212-313 59-165 (418)
373 cd00923 Cyt_c_Oxidase_Va Cytoc 76.7 17 0.00038 28.4 7.0 45 486-530 25-69 (103)
374 cd00923 Cyt_c_Oxidase_Va Cytoc 76.3 18 0.00039 28.3 7.0 50 263-312 22-71 (103)
375 KOG4570 Uncharacterized conser 76.2 10 0.00022 36.7 7.0 99 113-212 61-165 (418)
376 PF11207 DUF2989: Protein of u 75.3 21 0.00045 32.6 8.4 73 485-558 123-198 (203)
377 PF10579 Rapsyn_N: Rapsyn N-te 75.3 5.6 0.00012 29.7 4.0 46 683-728 17-65 (80)
378 PRK11619 lytic murein transgly 75.0 1.5E+02 0.0033 33.4 38.4 76 318-393 129-207 (644)
379 KOG0276 Vesicle coat complex C 74.3 97 0.0021 33.5 13.8 131 471-630 617-747 (794)
380 PF02284 COX5A: Cytochrome c o 74.2 42 0.00092 26.7 9.2 47 486-532 28-74 (108)
381 KOG4507 Uncharacterized conser 73.7 15 0.00033 38.9 8.0 132 601-737 568-707 (886)
382 KOG4642 Chaperone-dependent E3 73.2 31 0.00067 32.3 8.9 81 548-630 20-104 (284)
383 cd08819 CARD_MDA5_2 Caspase ac 73.0 24 0.00052 27.1 6.9 65 523-589 22-86 (88)
384 PF02284 COX5A: Cytochrome c o 71.8 27 0.00058 27.7 7.0 46 667-712 40-85 (108)
385 COG4976 Predicted methyltransf 71.5 7 0.00015 36.0 4.5 57 649-705 4-62 (287)
386 KOG3364 Membrane protein invol 70.9 34 0.00074 28.8 7.8 71 637-707 29-106 (149)
387 PF12862 Apc5: Anaphase-promot 70.8 13 0.00029 29.3 5.7 53 683-735 9-70 (94)
388 COG5159 RPN6 26S proteasome re 69.8 1.1E+02 0.0024 29.6 19.4 179 541-719 128-332 (421)
389 PF07720 TPR_3: Tetratricopept 69.7 16 0.00034 22.6 4.5 30 675-704 4-35 (36)
390 PF10579 Rapsyn_N: Rapsyn N-te 69.7 9.6 0.00021 28.5 4.1 47 616-662 18-65 (80)
391 PRK13800 putative oxidoreducta 68.1 2.6E+02 0.0057 33.3 25.2 93 638-733 787-879 (897)
392 PF09670 Cas_Cas02710: CRISPR- 68.0 68 0.0015 33.3 11.6 50 581-631 143-196 (379)
393 PF00244 14-3-3: 14-3-3 protei 67.8 1.2E+02 0.0025 29.1 12.3 163 574-737 6-200 (236)
394 PF13929 mRNA_stabil: mRNA sta 67.7 1.3E+02 0.0028 29.5 12.7 58 214-271 199-261 (292)
395 PF12968 DUF3856: Domain of Un 67.5 69 0.0015 26.4 11.4 56 677-732 60-126 (144)
396 KOG2062 26S proteasome regulat 67.3 2.1E+02 0.0046 31.9 38.0 184 544-742 507-698 (929)
397 COG5159 RPN6 26S proteasome re 67.2 1.3E+02 0.0027 29.2 12.2 43 479-521 14-63 (421)
398 COG2912 Uncharacterized conser 66.1 47 0.001 32.0 9.0 62 675-736 184-245 (269)
399 KOG0545 Aryl-hydrocarbon recep 65.0 1.2E+02 0.0025 28.8 10.8 67 642-708 232-300 (329)
400 PRK10941 hypothetical protein; 64.9 44 0.00095 32.6 8.9 65 645-709 186-252 (269)
401 PRK13800 putative oxidoreducta 64.8 3E+02 0.0065 32.8 26.4 154 536-700 726-880 (897)
402 PF07163 Pex26: Pex26 protein; 64.8 66 0.0014 31.0 9.5 88 576-666 90-184 (309)
403 PF09477 Type_III_YscG: Bacter 64.6 73 0.0016 25.6 8.3 81 195-278 19-99 (116)
404 KOG2300 Uncharacterized conser 63.9 2E+02 0.0043 30.4 38.2 161 574-735 328-514 (629)
405 PF04190 DUF410: Protein of un 63.5 1.5E+02 0.0033 28.9 17.8 81 364-460 87-168 (260)
406 PF14863 Alkyl_sulf_dimr: Alky 63.4 27 0.0006 30.0 6.4 65 656-723 57-121 (141)
407 PF13929 mRNA_stabil: mRNA sta 63.4 1.5E+02 0.0034 28.9 16.8 66 428-493 197-263 (292)
408 TIGR03504 FimV_Cterm FimV C-te 63.2 17 0.00036 23.8 3.9 24 575-598 5-28 (44)
409 COG4941 Predicted RNA polymera 61.5 1.6E+02 0.0035 29.3 11.6 121 584-708 271-401 (415)
410 PF09477 Type_III_YscG: Bacter 61.4 85 0.0018 25.3 8.1 79 518-599 21-99 (116)
411 KOG0292 Vesicle coat complex C 60.5 15 0.00032 41.0 5.2 117 582-730 606-722 (1202)
412 PF07575 Nucleopor_Nup85: Nup8 59.5 2.9E+02 0.0062 30.8 20.1 68 390-459 397-464 (566)
413 PF10345 Cohesin_load: Cohesin 59.2 3E+02 0.0066 30.9 36.6 23 575-597 583-605 (608)
414 KOG2063 Vacuolar assembly/sort 59.0 3.5E+02 0.0075 31.6 17.6 209 471-716 507-742 (877)
415 PF11663 Toxin_YhaV: Toxin wit 57.8 14 0.0003 31.0 3.5 34 54-89 105-138 (140)
416 KOG3807 Predicted membrane pro 57.8 2E+02 0.0044 28.5 13.3 52 574-627 280-334 (556)
417 KOG2422 Uncharacterized conser 57.7 2.7E+02 0.0059 30.2 13.2 15 706-720 483-497 (665)
418 PF04910 Tcf25: Transcriptiona 57.5 2.4E+02 0.0051 29.2 16.0 28 536-563 38-65 (360)
419 PF10516 SHNi-TPR: SHNi-TPR; 57.4 24 0.00052 22.2 3.7 29 707-735 2-30 (38)
420 KOG2659 LisH motif-containing 56.5 84 0.0018 29.4 8.5 15 651-665 114-128 (228)
421 PF09986 DUF2225: Uncharacteri 56.4 60 0.0013 30.4 8.0 91 614-704 87-197 (214)
422 PF11846 DUF3366: Domain of un 55.7 23 0.00051 32.6 5.2 36 668-703 140-175 (193)
423 KOG0376 Serine-threonine phosp 55.6 23 0.0005 36.8 5.4 102 576-682 11-115 (476)
424 PF07163 Pex26: Pex26 protein; 55.6 1.3E+02 0.0028 29.2 9.7 21 475-495 90-110 (309)
425 PF10255 Paf67: RNA polymerase 53.6 26 0.00057 36.2 5.5 28 705-732 163-190 (404)
426 PF12862 Apc5: Anaphase-promot 53.5 45 0.00098 26.2 5.8 30 674-703 43-72 (94)
427 PF11848 DUF3368: Domain of un 51.6 39 0.00085 22.6 4.3 37 52-88 10-46 (48)
428 PF11768 DUF3312: Protein of u 51.2 2.6E+02 0.0056 30.2 12.1 127 542-692 412-543 (545)
429 PF04910 Tcf25: Transcriptiona 51.0 3E+02 0.0065 28.4 16.9 167 552-733 24-220 (360)
430 cd00280 TRFH Telomeric Repeat 50.9 67 0.0014 28.8 6.6 48 679-727 118-165 (200)
431 COG5191 Uncharacterized conser 50.3 34 0.00075 33.3 5.2 80 636-715 103-185 (435)
432 cd08819 CARD_MDA5_2 Caspase ac 49.8 1.1E+02 0.0023 23.7 6.7 38 229-267 48-85 (88)
433 KOG1308 Hsp70-interacting prot 49.7 19 0.00041 35.6 3.5 85 617-704 127-214 (377)
434 PRK13342 recombination factor 49.5 3.4E+02 0.0075 28.7 14.3 168 162-344 152-331 (413)
435 PF02184 HAT: HAT (Half-A-TPR) 49.0 41 0.00089 20.2 3.5 27 687-714 2-28 (32)
436 PF11846 DUF3366: Domain of un 48.5 48 0.001 30.5 6.1 32 635-666 139-170 (193)
437 KOG2581 26S proteasome regulat 47.6 3E+02 0.0064 28.4 11.2 22 607-628 212-233 (493)
438 COG0790 FOG: TPR repeat, SEL1 47.1 3E+02 0.0065 27.3 22.3 16 483-498 128-143 (292)
439 KOG3824 Huntingtin interacting 46.9 45 0.00097 32.4 5.4 63 650-712 126-190 (472)
440 PF11663 Toxin_YhaV: Toxin wit 46.7 27 0.00059 29.3 3.5 32 159-192 107-138 (140)
441 PF11848 DUF3368: Domain of un 45.7 85 0.0018 21.0 5.2 35 257-291 11-45 (48)
442 PF13762 MNE1: Mitochondrial s 45.5 2E+02 0.0044 24.9 9.7 76 221-296 43-128 (145)
443 KOG2659 LisH motif-containing 44.8 2.7E+02 0.0059 26.2 10.4 98 600-700 22-131 (228)
444 KOG4077 Cytochrome c oxidase, 43.7 1.3E+02 0.0028 25.1 6.8 43 489-531 70-112 (149)
445 TIGR02710 CRISPR-associated pr 42.6 2.5E+02 0.0055 29.0 10.3 55 575-629 136-196 (380)
446 PF10366 Vps39_1: Vacuolar sor 42.5 1.5E+02 0.0032 24.2 7.2 28 249-276 40-67 (108)
447 KOG0403 Neoplastic transformat 42.4 4.2E+02 0.0092 27.7 28.4 70 543-616 514-586 (645)
448 KOG0889 Histone acetyltransfer 42.0 1.1E+03 0.024 32.5 22.6 63 652-714 2787-2854(3550)
449 PHA02537 M terminase endonucle 41.8 1.9E+02 0.0041 27.4 8.6 21 684-704 190-210 (230)
450 KOG0530 Protein farnesyltransf 41.2 3.4E+02 0.0074 26.2 16.3 120 655-780 93-215 (318)
451 PF14689 SPOB_a: Sensor_kinase 41.1 80 0.0017 22.5 4.9 23 473-495 28-50 (62)
452 PF14689 SPOB_a: Sensor_kinase 41.0 77 0.0017 22.6 4.8 24 436-459 26-49 (62)
453 KOG2062 26S proteasome regulat 40.0 6E+02 0.013 28.7 32.3 139 577-720 509-656 (929)
454 PF04090 RNA_pol_I_TF: RNA pol 39.9 1.9E+02 0.0041 26.7 8.1 90 674-763 43-133 (199)
455 KOG4077 Cytochrome c oxidase, 39.6 1.5E+02 0.0033 24.7 6.5 45 667-711 79-123 (149)
456 KOG4279 Serine/threonine prote 38.6 5.8E+02 0.013 28.8 12.4 174 399-598 202-395 (1226)
457 KOG0687 26S proteasome regulat 37.4 4.4E+02 0.0095 26.4 12.1 93 538-632 104-209 (393)
458 KOG2581 26S proteasome regulat 37.0 2.3E+02 0.0051 29.1 8.8 136 570-705 125-280 (493)
459 PRK10564 maltose regulon perip 36.0 68 0.0015 31.4 4.9 39 250-288 259-297 (303)
460 KOG2908 26S proteasome regulat 36.0 4E+02 0.0086 26.8 9.9 55 612-666 83-141 (380)
461 PF10366 Vps39_1: Vacuolar sor 35.8 2.4E+02 0.0052 23.0 8.3 26 572-597 42-67 (108)
462 KOG4814 Uncharacterized conser 35.5 1.4E+02 0.0031 32.5 7.5 50 683-732 405-454 (872)
463 PF08311 Mad3_BUB1_I: Mad3/BUB 35.5 2.7E+02 0.0059 23.4 8.1 42 690-731 81-124 (126)
464 COG2909 MalT ATP-dependent tra 35.2 7.7E+02 0.017 28.6 34.6 85 478-562 425-521 (894)
465 KOG2908 26S proteasome regulat 35.1 4.3E+02 0.0094 26.6 10.0 67 403-469 80-156 (380)
466 PHA02875 ankyrin repeat protei 34.3 5.8E+02 0.012 26.9 15.8 19 224-242 72-90 (413)
467 KOG0551 Hsp90 co-chaperone CNS 34.0 1.7E+02 0.0036 29.2 7.1 87 576-665 88-178 (390)
468 COG0735 Fur Fe2+/Zn2+ uptake r 33.7 2.2E+02 0.0048 24.7 7.4 63 489-552 7-69 (145)
469 PF08311 Mad3_BUB1_I: Mad3/BUB 33.3 2.9E+02 0.0064 23.2 9.1 43 416-458 81-124 (126)
470 PF09670 Cas_Cas02710: CRISPR- 32.2 6E+02 0.013 26.5 11.9 52 443-495 141-196 (379)
471 PF00244 14-3-3: 14-3-3 protei 32.1 4.6E+02 0.01 25.1 11.2 39 440-478 8-46 (236)
472 KOG0687 26S proteasome regulat 31.4 5.5E+02 0.012 25.8 11.9 22 644-665 108-129 (393)
473 COG5108 RPO41 Mitochondrial DN 31.3 2.6E+02 0.0056 30.8 8.5 88 222-312 33-132 (1117)
474 KOG0403 Neoplastic transformat 31.2 6.4E+02 0.014 26.5 17.2 75 572-652 512-586 (645)
475 PF06957 COPI_C: Coatomer (COP 31.1 1.6E+02 0.0035 30.8 7.0 46 660-705 286-333 (422)
476 cd08326 CARD_CASP9 Caspase act 30.6 1.7E+02 0.0037 22.5 5.5 37 228-264 41-77 (84)
477 PRK10564 maltose regulon perip 30.2 99 0.0022 30.4 5.0 37 401-437 260-296 (303)
478 PHA02875 ankyrin repeat protei 29.4 6.9E+02 0.015 26.3 17.5 207 53-283 8-230 (413)
479 KOG2297 Predicted translation 29.4 5.7E+02 0.012 25.3 9.6 18 430-447 220-237 (412)
480 PF15015 NYD-SP12_N: Spermatog 29.4 1.2E+02 0.0025 31.3 5.4 20 645-664 233-252 (569)
481 KOG2300 Uncharacterized conser 29.1 7.3E+02 0.016 26.5 33.8 122 476-597 331-473 (629)
482 PF08424 NRDE-2: NRDE-2, neces 28.5 6.3E+02 0.014 25.5 14.8 137 526-664 8-178 (321)
483 PF10255 Paf67: RNA polymerase 28.3 1.2E+02 0.0026 31.5 5.6 58 218-275 123-191 (404)
484 PF04123 DUF373: Domain of unk 28.3 1.7E+02 0.0036 29.8 6.4 74 689-785 28-103 (344)
485 PF12968 DUF3856: Domain of Un 28.3 3.2E+02 0.007 22.7 6.7 57 644-700 59-128 (144)
486 PRK12798 chemotaxis protein; R 27.9 7.2E+02 0.016 26.0 20.1 191 446-639 125-329 (421)
487 KOG2034 Vacuolar sorting prote 27.3 1E+03 0.022 27.6 25.1 111 369-485 532-645 (911)
488 cd00280 TRFH Telomeric Repeat 26.9 3.8E+02 0.0081 24.4 7.4 19 613-631 120-138 (200)
489 PF09454 Vps23_core: Vps23 cor 26.9 2.3E+02 0.0049 20.6 5.2 47 396-443 6-52 (65)
490 PRK11639 zinc uptake transcrip 26.7 2.1E+02 0.0046 25.6 6.3 46 150-195 28-73 (169)
491 PF12069 DUF3549: Protein of u 26.6 6.9E+02 0.015 25.4 13.5 149 223-373 172-322 (340)
492 cd08326 CARD_CASP9 Caspase act 26.4 3E+02 0.0066 21.2 6.4 39 550-588 42-80 (84)
493 PF04762 IKI3: IKI3 family; I 26.2 1.1E+03 0.023 28.3 13.5 126 369-497 696-843 (928)
494 PF12583 TPPII_N: Tripeptidyl 26.2 2.6E+02 0.0057 23.5 5.9 39 681-719 85-123 (139)
495 KOG2168 Cullins [Cell cycle co 26.1 1.1E+03 0.023 27.4 22.0 16 651-666 718-733 (835)
496 PF04781 DUF627: Protein of un 26.1 3.7E+02 0.008 22.0 7.0 37 690-726 62-98 (111)
497 PF10373 EST1_DNA_bind: Est1 D 26.0 1.2E+02 0.0026 29.8 5.2 36 691-726 1-36 (278)
498 KOG2534 DNA polymerase IV (fam 25.7 5.8E+02 0.012 25.4 9.0 142 641-787 66-222 (353)
499 COG5191 Uncharacterized conser 25.6 1.4E+02 0.0031 29.3 5.1 67 669-735 104-171 (435)
500 PRK15490 Vi polysaccharide bio 25.6 3.4E+02 0.0074 29.8 8.5 46 650-696 52-98 (578)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.8e-105 Score=915.56 Aligned_cols=722 Identities=32% Similarity=0.592 Sum_probs=703.4
Q ss_pred CCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHh
Q 035503 40 YESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119 (788)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (788)
.++...++|.+++++++.|.+++|..+|+.|.+.|++|+..+|..++.+|.+.+.+..|.++|..+++.+ ..++..++
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~ 124 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH--PSLGVRLG 124 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC--CCCCchHH
Confidence 4556668999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred hHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCch
Q 035503 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199 (788)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 199 (788)
|.|+.+|+++|+++.|.++|++|++||+++||.+|.+|.+.|++++|+++|++|.+.|+.||..||+.++++|+..+++.
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCC
Q 035503 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279 (788)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 279 (788)
.+.+++..+++.|+.+|..++|.||.+|+++|+++.|.++|++|+.+|+++||.||.+|++.|++++|+++|++|...|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHH
Q 035503 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359 (788)
Q Consensus 280 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 359 (788)
.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|+++|++++|.++|++|..+|+++||++|.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877777666
Q ss_pred HHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc----cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhH
Q 035503 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435 (788)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 435 (788)
++. |++++|+++|++|. .||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 365 ~~~------------------g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 365 EKN------------------GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred HhC------------------CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 554 58999999999884 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 035503 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515 (788)
Q Consensus 436 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 515 (788)
|+.|+.+|+++|++++|.++|++|.+. |..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||..++.+|++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 999999999999999999999999765 889999999999999999999999999986 599999999999999999
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 035503 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595 (788)
Q Consensus 516 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 595 (788)
.|.++.+.+++..+.+.|..++..+++.|+++|+++|++++|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++|
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 035503 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675 (788)
Q Consensus 596 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 675 (788)
.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|++++++|++.|++++|.+++++|+.+||..+|
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~ 660 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHH
Confidence 99999999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEE
Q 035503 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755 (788)
Q Consensus 676 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (788)
.+|+.+|..+|+.+.|+.+.+++++++|+++..|..|+++|...|+|++|.++++.|.++|+++.||+|||++++++|.|
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f 740 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHhcCCccC
Q 035503 756 VACDRSHPKTEEIYATLALLGMHVRLVSKVFC 787 (788)
Q Consensus 756 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 787 (788)
+.||++||+..+||..|+++..+|++.||+++
T Consensus 741 ~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~ 772 (857)
T PLN03077 741 LTDDESHPQIKEINTVLEGFYEKMKASGLAGS 772 (857)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHHhCCcCCC
Confidence 99999999999999999999999999999975
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.3e-77 Score=683.06 Aligned_cols=577 Identities=26% Similarity=0.399 Sum_probs=552.7
Q ss_pred cCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCch
Q 035503 37 DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNE 116 (788)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 116 (788)
+..+++++++||.+|++|++.|++++|+++|++|...|+.||..||+.++.+|+..+++..+.++|.++++.| +.+|.
T Consensus 145 ~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g--~~~~~ 222 (857)
T PLN03077 145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG--FELDV 222 (857)
T ss_pred hcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC--CCccc
Confidence 3446788999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hHhhHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccC
Q 035503 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196 (788)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 196 (788)
.+++.|+.+|+++|++++|.++|++|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHH
Q 035503 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276 (788)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 276 (788)
+.+.|.+++..+.+.|+.||..+||.|+.+|+++|++++|.++|++|..+|+++||.+|.+|++.|++++|+++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHH
Q 035503 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356 (788)
Q Consensus 277 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 356 (788)
.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+++|+++|++++|.++|++|.++|+++||++|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 035503 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433 (788)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 433 (788)
.+|+++ |+.++|..+|++|. .||..+|+.++.+|++.|..+.+.+++..+.+.|+.+|.
T Consensus 463 ~~~~~~------------------g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 463 AGLRLN------------------NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred HHHHHC------------------CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 777655 58899999999986 689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 035503 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513 (788)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 513 (788)
.+++.|+.+|+++|++++|..+|+.+ .||..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 99999999999999999999999987 5699999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC-CCChhhHHHHHHHHHhCCCHHHHHHH
Q 035503 514 TDVASLRNGRAIHGYLI-RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVEALAL 591 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 591 (788)
.+.|.+++|.++|+.|. +.+..|+..+|+.++++|++.|++++|.+++++|+ +||..+|++|+.+|..+|+.+.+...
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999999999999999 68999999999999999999999999999999995 69999999999999999999999999
Q ss_pred HHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc
Q 035503 592 FKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641 (788)
Q Consensus 592 ~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 641 (788)
.+++.+. .| +...|..+.+.|...|++++|.++.+.|.+ .|+.+++.
T Consensus 680 a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~-~g~~k~~g 727 (857)
T PLN03077 680 AQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE-NGLTVDPG 727 (857)
T ss_pred HHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH-cCCCCCCC
Confidence 9998874 55 456677777799999999999999999955 48877653
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-75 Score=652.75 Aligned_cols=526 Identities=30% Similarity=0.512 Sum_probs=475.2
Q ss_pred CCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCC-CCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhh
Q 035503 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVAS 221 (788)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 221 (788)
..++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..++|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34577899999999999999999999999998865 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH
Q 035503 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301 (788)
Q Consensus 222 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 301 (788)
.|+.+|+++|+++.|.++|++|.+||+++||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888877776666555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcC
Q 035503 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381 (788)
Q Consensus 302 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (788)
+.+++..+.+.
T Consensus 243 ~~~l~~~~~~~--------------------------------------------------------------------- 253 (697)
T PLN03081 243 GQQLHCCVLKT--------------------------------------------------------------------- 253 (697)
T ss_pred HHHHHHHHHHh---------------------------------------------------------------------
Confidence 55555544444
Q ss_pred ChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 035503 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461 (788)
Q Consensus 382 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (788)
|+.||..+|+.|+.+|+++|++++|.++|+.|.+
T Consensus 254 ----------------------------------------------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 287 (697)
T PLN03081 254 ----------------------------------------------GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287 (697)
T ss_pred ----------------------------------------------CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 4555555555555555555555555556655543
Q ss_pred CCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHH
Q 035503 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541 (788)
Q Consensus 462 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 541 (788)
. |..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|..++..++
T Consensus 288 ~----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 288 K----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred C----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 3 666777777777777777777777777777777777777777777777777777777777777777777888889
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHH
Q 035503 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621 (788)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 621 (788)
+.|+++|+++|++++|.++|+.|.++|..+||.||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 035503 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701 (788)
Q Consensus 622 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (788)
+|.++|+.|.+.+++.|+..+|++++++|++.|++++|.+++++++..|+..+|++++.+|..+|+++.|+.++++++++
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 035503 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781 (788)
Q Consensus 702 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 781 (788)
+|++...|..|+++|.+.|+|++|.++++.|.++|+++.||++|+++++.+|.|++||..||+..+||+.++++..+|++
T Consensus 524 ~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccC
Q 035503 782 VSKVFC 787 (788)
Q Consensus 782 ~~~~~~ 787 (788)
.||+++
T Consensus 604 ~gy~~~ 609 (697)
T PLN03081 604 YGYVAE 609 (697)
T ss_pred cCCCCC
Confidence 999986
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-67 Score=589.10 Aligned_cols=566 Identities=27% Similarity=0.425 Sum_probs=489.5
Q ss_pred CccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhh
Q 035503 42 SLYKSYFHQISSLSKEKQIREAVDLLTEMKCRN-FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120 (788)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 120 (788)
.+..+|+++|..+.+.|++++|+++|+.|...+ +.|+..+|+.++.+|++.++++.+.++|..+.+.| +.+|..+++
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g--~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG--FEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCcchHHHH
Confidence 345589999999999999999999999998764 78999999999999999999999999999999999 999999999
Q ss_pred HHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchH
Q 035503 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200 (788)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 200 (788)
.|+.+|+++|++++|.++|++|+.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCC
Q 035503 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280 (788)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 280 (788)
+.+++..+.+.|+.+|..++|.|+++|+++|++++|.++|++|..+|+++||.||.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHH
Q 035503 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360 (788)
Q Consensus 281 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 360 (788)
||..||+.++.+|++.|+++.|.+++..+.+.|+.+|..+++.|+++|+++|++++|.++|++|.++
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~------------- 389 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK------------- 389 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-------------
Confidence 9999999999999999999999999999999999999999999999999988888888888777654
Q ss_pred HcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 035503 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440 (788)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 440 (788)
|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++
T Consensus 390 ------------------------------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 390 ------------------------------------NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred ------------------------------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 55677888888888999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhh-CCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCch
Q 035503 441 LGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519 (788)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 519 (788)
.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.++.+|...|++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNL 510 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999964 799999999999999999999999999999887 4789999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh-----hhHHH-------HHHHHHhCCC---
Q 035503 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL-----PVYNA-------MISGYAMHGL--- 584 (788)
Q Consensus 520 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~-------l~~~~~~~g~--- 584 (788)
+.|..+++.+.+.++ .+...|..++++|++.|++++|.++++.|.+... .+|.. ++.....+.+
T Consensus 511 ~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 511 ELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred HHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 999999999988776 5677899999999999999999999998876432 23321 1111111112
Q ss_pred -HHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHH-HHHHHhcHhhcCCCCCcch-HHHHHHHHhhcCChHHHHH
Q 035503 585 -AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG-LELFVGMFSDHQVKPSMEH-FGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 585 -~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A-~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~ 661 (788)
+....++..+|.+.|..||......-+... .-++. ..+-+++.-.+|+--.+.. --.++.-+.-+|+...|.+
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~----~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k 665 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEENELLPDVDED----EEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIK 665 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchhhccccHH----HHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHH
Confidence 344567888899999999865422111100 00011 1111111112232111110 0123445566889999999
Q ss_pred HHHhC
Q 035503 662 VILTM 666 (788)
Q Consensus 662 ~~~~~ 666 (788)
++.++
T Consensus 666 ~~s~~ 670 (697)
T PLN03081 666 FIALV 670 (697)
T ss_pred HHhhh
Confidence 98877
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.6e-66 Score=576.19 Aligned_cols=534 Identities=16% Similarity=0.190 Sum_probs=472.6
Q ss_pred CCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHH
Q 035503 76 QIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155 (788)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 155 (788)
.++...|..++..|++.|++++|.++++.|.+.+. .+.+...++.++..|.+.|.+++|..+|+.|+.||..+|+.+|.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv-v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL-LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35566788999999999999999999999988872 35677788889999999999999999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHH
Q 035503 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235 (788)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 235 (788)
+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC----CCCCcchHHHHHHHHHHCCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHH
Q 035503 236 ARKVFDGM----IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL--EGVEPTRVSVTSILSASANLDALDEGKQAHAVA 309 (788)
Q Consensus 236 A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 309 (788)
|.++|++| ..||.++||.+|.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998 357889999999999999999999999999976 578999999999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHH
Q 035503 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQV 389 (788)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (788)
.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.+.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv---------------------------------------- 645 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV---------------------------------------- 645 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------------------------------
Confidence 9999999999999999999999999999999998877655
Q ss_pred HHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChh
Q 035503 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469 (788)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 469 (788)
.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 646 -----~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv 720 (1060)
T PLN03218 646 -----KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720 (1060)
T ss_pred -----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (788)
+|+.||.+|++.|++++|.++|++|...|+.||..+|..++.+|++.|+++.|.+++..|.+.|+.|+..+|+.++.++.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHh
Q 035503 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 629 (788)
+++++|..+.+.+.. |+. .......+..++|..+|++|++.|+.||..||..++.+++..+..+.+..+++.
T Consensus 801 --~~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~ 872 (1060)
T PLN03218 801 --RRFEKACALGEPVVS-----FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIEN 872 (1060)
T ss_pred --HHHHHHhhhhhhhhh-----hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 245555544332221 110 111112233467999999999999999999999999888889999888888887
Q ss_pred cHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 630 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
|... +..|+..+|++|++++++. .++|..++++|
T Consensus 873 m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 873 LGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred hccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 7433 6677788999999988432 47899999998
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-62 Score=546.54 Aligned_cols=534 Identities=15% Similarity=0.163 Sum_probs=357.1
Q ss_pred CCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcC-CCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHH
Q 035503 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256 (788)
Q Consensus 178 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 256 (788)
..++...|..++..|++.|++++|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346677899999999999999999999999999984 5778888899999999999999999999999999999999999
Q ss_pred HHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhH
Q 035503 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336 (788)
Q Consensus 257 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 336 (788)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc------cCChhHHHHHHHHHHH
Q 035503 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII------LRDVVLWNTLLAAYAD 410 (788)
Q Consensus 337 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~ 410 (788)
|.++|++|.+.+. .||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++
T Consensus 526 Al~lf~~M~~~Gv--------------~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 526 AFGAYGIMRSKNV--------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 9999999977665 3444444444444555555555555555542 2445555555555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHH
Q 035503 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490 (788)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 490 (788)
.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC----
Q 035503 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---- 566 (788)
Q Consensus 491 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 566 (788)
|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.+..|+...|+.++.+|++.|++++|.++|+.|..
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555554432
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHH
Q 035503 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646 (788)
Q Consensus 567 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 646 (788)
||..+|+.++.+|++.|+.++|.+++++|.+.|+.||..+|+.++..|.+ +++++....+.+.. +.+
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~---f~~-------- 818 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS---FDS-------- 818 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh---hhc--------
Confidence 44455555555555555555555555555555555555555555433321 22233222222110 000
Q ss_pred HHHHhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHhCCCc
Q 035503 647 VNLLSRCGNLDEALRVILTM---PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ-LEPDNPGNYVALSNAYAASGRW 722 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~ 722 (788)
+......+..++|..+|++| ...||..+|+.++..+...+..+.+..+++.+.. -.+.+..+|..|++.+ |++
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~ 895 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEY 895 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccC
Confidence 00000112346788888888 5678888888888766677788888777776432 2344577888888876 333
Q ss_pred -HHHHHHHHHHHHCCCccCC
Q 035503 723 -NEVSQVRDIMKEKGLRKNP 741 (788)
Q Consensus 723 -~~A~~~~~~~~~~~~~~~~ 741 (788)
++|..+++.|...|+.+..
T Consensus 896 ~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 896 DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred hHHHHHHHHHHHHcCCCCCc
Confidence 5899999999998876654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-39 Score=385.72 Aligned_cols=675 Identities=13% Similarity=0.066 Sum_probs=458.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHH
Q 035503 45 KSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVV 124 (788)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (788)
..+..+...+...|++++|+++++++.+.. +.+...+..+...+...|++++|...++++++.. |.++..+..++.
T Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~ 235 (899)
T TIGR02917 160 YAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR---PNNPAVLLALAT 235 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHH
Confidence 345555555555555555555555554432 2333444445555555555555555555555543 344555555555
Q ss_pred HHhccCChHHHHHHhccCCC--C-CcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCc-ccHHHHHHHhcccCCchH
Q 035503 125 FYAKCDALDVASRLFCRLRV--K-NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN-FVLPNVLKACGALGWVGF 200 (788)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~ 200 (788)
.+...|++++|...++.+.. | +...+......+...|++++|+..|+++.+.+ |+. ..+..+...+...|+++.
T Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~ 313 (899)
T TIGR02917 236 ILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQ 313 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHH
Confidence 55555555555555554421 1 11112222223344555666666665555432 221 122233334456667777
Q ss_pred HHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHHCCChhHHHHHHHHHHHc
Q 035503 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277 (788)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 277 (788)
|...++.+++.. +.+...+..+...+.+.|++++|...++.+... +...+..+...+.+.|++++|.++|+++.+.
T Consensus 314 A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 392 (899)
T TIGR02917 314 AYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL 392 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777777666654 445556666677777777777777777766432 4456667777777777777777777777654
Q ss_pred CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCC---CchhHHH
Q 035503 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER---DIVTWNL 354 (788)
Q Consensus 278 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 354 (788)
. +.+...+..+...+...|+.++|...+..+.+.... .......++..+.+.|++++|..+++++... ++..|..
T Consensus 393 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 470 (899)
T TIGR02917 393 D-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL 470 (899)
T ss_pred C-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 3 234455566666666777777777777776665422 2334455666677777777777777666432 3344555
Q ss_pred HHHHHHHcC----------------CCchhHHHHHHHHHhhcCChHHHHHHHHhccc---CChhHHHHHHHHHHHcCChh
Q 035503 355 LIASYVQSG----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIIL---RDVVLWNTLLAAYADLGRSG 415 (788)
Q Consensus 355 li~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 415 (788)
+...+...| +.+...+..++..+...|++++|...|+.+.. .+..++..+...+.+.|+.+
T Consensus 471 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 550 (899)
T TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550 (899)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHH
Confidence 555555444 23344566677777778888888888877652 35567777777888888888
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHH
Q 035503 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495 (788)
Q Consensus 416 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (788)
+|..+++++...+ +.+...+..++..|.+.|++++|..+++.+.+. .+.+...|..+..++...|++++|...|+++.
T Consensus 551 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 551 EAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888877653 345566777778888888888888888887654 24467778888888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhH
Q 035503 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVY 572 (788)
Q Consensus 496 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 572 (788)
+.. +.+...+..+..++...|++++|..+++.+.+..+ .+...+..++..+...|++++|.++++.+.. .+...+
T Consensus 629 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 706 (899)
T TIGR02917 629 ALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF 706 (899)
T ss_pred HhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH
Confidence 643 34556677777788888888888888888888776 5677788888888888888888888877654 345567
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh
Q 035503 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652 (788)
Q Consensus 573 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 652 (788)
..++..+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++++.+. .+.+...+..++..|.+
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 77888888889999999999888775 355567777888888889999999888888753 33456777788888999
Q ss_pred cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHH
Q 035503 653 CGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 653 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 730 (788)
.|+.++|.+.|+++ ..+++...++.++..+...|+ ++|+..++++++..|+++..+..++.+|...|++++|..+++
T Consensus 783 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999887 234566788888888888888 779999999999999999999999999999999999999999
Q ss_pred HHHHCCC
Q 035503 731 IMKEKGL 737 (788)
Q Consensus 731 ~~~~~~~ 737 (788)
++++.++
T Consensus 862 ~a~~~~~ 868 (899)
T TIGR02917 862 KAVNIAP 868 (899)
T ss_pred HHHhhCC
Confidence 9988764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.3e-40 Score=387.74 Aligned_cols=679 Identities=13% Similarity=0.050 Sum_probs=533.7
Q ss_pred CCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHh
Q 035503 40 YESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119 (788)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (788)
.|.+...|..+...+...|++++|...|++....+ +.+..++..++..+...|++++|...++.+.+.. +.++...
T Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~ 264 (899)
T TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKA---PNSPLAH 264 (899)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHH
Confidence 45556678888888889999999999999988765 3456678888888888999999999999888875 4455555
Q ss_pred hHHHHHHhccCChHHHHHHhccCCCCC---cccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccC
Q 035503 120 TKLVVFYAKCDALDVASRLFCRLRVKN---VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196 (788)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 196 (788)
......+...|++++|...|+.+...+ ...+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|
T Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 343 (899)
T TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG 343 (899)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC
Confidence 566666777888888888887764322 2233444556677788888888888877643 223445666666777788
Q ss_pred CchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHHHHH
Q 035503 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA---RNVVAWNSMIVGYVQNGLNEEAIRVFYE 273 (788)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 273 (788)
+++.|.+.+..+.... +.+..++..+...+.+.|++++|...|+++.. .+...|..+...+...|++++|++.|+.
T Consensus 344 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 344 RVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 8888888887777665 45566777777788888888888888877643 2445666677777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCC---Cch
Q 035503 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER---DIV 350 (788)
Q Consensus 274 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 350 (788)
+.+... .+......++..+...|+.+.|..++..+.... +.+..++..+...|...|++++|...|+++.+. +..
T Consensus 423 a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 500 (899)
T TIGR02917 423 AAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP 500 (899)
T ss_pred HHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Confidence 766532 123344455666667777777777777766543 345566777777777777777777777766432 222
Q ss_pred hHHHHHHHHHHcC----------------CCchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCChhHHHHHHHHHHHc
Q 035503 351 TWNLLIASYVQSG----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDVVLWNTLLAAYADL 411 (788)
Q Consensus 351 ~~~~li~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 411 (788)
.+..+...+...| +.+...+..++..+.+.|+.++|...|+++. ..+...+..++..+...
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC
Confidence 3333333333333 3456678888999999999999999999885 33556788899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHH
Q 035503 412 GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491 (788)
Q Consensus 412 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 491 (788)
|++++|..+++.+.... +.+..+|..+..++.+.|++++|...|+.+.+.. +.+...+..+..++...|++++|..+|
T Consensus 581 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 581 GQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998763 5677889999999999999999999999997653 346778899999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCh
Q 035503 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KEL 569 (788)
Q Consensus 492 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~ 569 (788)
+++.+.. +.+..++..+...+...|++++|..+++.+.+..+ .+...+..++..+...|++++|.+.|+.+.. ++.
T Consensus 659 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 659 KRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Confidence 9999753 44577888899999999999999999999999887 6778888999999999999999999997754 555
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
.++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|..+|+++... .+++...+..++..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~ 813 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWL 813 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 778889999999999999999999998864 456778888888999999999999999999753 23457788899999
Q ss_pred HhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHH
Q 035503 650 LSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
+...|+ ++|+++++++ .. +.+...+..++.++...|++++|+..++++++.+|.++.++..++.+|.+.|++++|.+
T Consensus 814 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 814 YLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 999999 8899999987 33 33456788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 035503 728 VRDIMKE 734 (788)
Q Consensus 728 ~~~~~~~ 734 (788)
++++|++
T Consensus 893 ~~~~~~~ 899 (899)
T TIGR02917 893 ELDKLLN 899 (899)
T ss_pred HHHHHhC
Confidence 9999863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.7e-28 Score=289.01 Aligned_cols=646 Identities=11% Similarity=0.029 Sum_probs=438.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHH
Q 035503 47 YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFY 126 (788)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (788)
.-..++.+...++.+.|.+.+.++.... +-++..+..++..+...|+.++|.+.++++.+.. |.++.........
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~---P~~~~~~~~~~~~- 105 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA---PDSNAYRSSRTTM- 105 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CCChHHHHHHHHH-
Confidence 3345566677788888888888877644 3346677777888888888888888888888876 3443322111000
Q ss_pred hccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHhcccCCchHHHHHH
Q 035503 127 AKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF-VLPNVLKACGALGWVGFGRAVH 205 (788)
Q Consensus 127 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~ 205 (788)
.+..++......+...+...|++++|+..|+.+.+.+ +|+.. ............|+.++|.+.+
T Consensus 106 --------------~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L 170 (1157)
T PRK11447 106 --------------LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQL 170 (1157)
T ss_pred --------------HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHH
Confidence 0011111112223334444555555555555544322 11111 0000111112234555555555
Q ss_pred HHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCC-----------------------cchHHHHHHHHHHCC
Q 035503 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN-----------------------VVAWNSMIVGYVQNG 262 (788)
Q Consensus 206 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------------------~~~~~~li~~~~~~g 262 (788)
+.+++.. +.+..++..+...+...|+.++|+..|+++.... ...+...+..+-...
T Consensus 171 ~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~ 249 (1157)
T PRK11447 171 QRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD 249 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch
Confidence 5555543 3344445555555555555555555555542211 111222222222223
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHH
Q 035503 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342 (788)
Q Consensus 263 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 342 (788)
....|...+..+......|+... ......+...|++++|...++.+++.. +.+...+..+..+|.+.|++++|+..|+
T Consensus 250 ~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 250 SVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34456666665544333333222 233456677899999999999999875 3467788899999999999999999999
Q ss_pred hcCCCCch-----hHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc---CChhHHHHHHHHHHHcCCh
Q 035503 343 RMVERDIV-----TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL---RDVVLWNTLLAAYADLGRS 414 (788)
Q Consensus 343 ~~~~~~~~-----~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 414 (788)
+..+.++. .|..++... ...........+.+.|++++|+..|+++.. .+...+..+...+...|++
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~------~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~ 401 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVN------RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY 401 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhh------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 98664331 233332210 001223346778899999999999998863 3566788889999999999
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--------CChhhHHHHHHHHHhCCCchH
Q 035503 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ--------PNLITWTTLISGLTQNSCGNE 486 (788)
Q Consensus 415 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~--------~~~~~~~~li~~~~~~g~~~~ 486 (788)
++|++.|+++++.. +.+...+..+...|. .++.++|..+++.+...... .....+..+...+...|++++
T Consensus 402 ~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e 479 (1157)
T PRK11447 402 AAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ 479 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence 99999999999863 334556666666664 56789999998876332100 012345667788899999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 035503 487 AILFFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565 (788)
Q Consensus 487 A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (788)
|++.|++.++. .|+ ...+..+...+...|++++|...++.+++..+ .+...+..++..+...|+.++|+..++.++
T Consensus 480 A~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~ 556 (1157)
T PRK11447 480 AAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLP 556 (1157)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 99999999984 454 55677788889999999999999999998877 566667777778889999999999999886
Q ss_pred CCC----hh---------hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHh
Q 035503 566 SKE----LP---------VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 566 ~~~----~~---------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 632 (788)
... .. .+..+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|+++++
T Consensus 557 ~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 557 RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 421 11 123456788999999999999883 244556677788889999999999999999985
Q ss_pred hcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--
Q 035503 633 DHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP-CDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG-- 707 (788)
Q Consensus 633 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-- 707 (788)
..|+ ...+..++.+|...|+.++|++.++.+. ..| +...+..++.++...|++++|+..++++++..|+++.
T Consensus 632 ---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 708 (1157)
T PRK11447 632 ---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSM 708 (1157)
T ss_pred ---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcch
Confidence 3455 6778899999999999999999999884 344 4556778888899999999999999999998876553
Q ss_pred ----hHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 708 ----NYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 708 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
.+..++.++...|++++|...|++.+.
T Consensus 709 ~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 709 ESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566789999999999999999999864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.4e-27 Score=281.25 Aligned_cols=611 Identities=12% Similarity=0.020 Sum_probs=433.8
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 035503 82 YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG 161 (788)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 161 (788)
+...+..+...++.+.|.+.+.++.... |.++.++..++..+.+.|+.++|.+.+++..+.+..+-.
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~---p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~---------- 97 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID---PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNA---------- 97 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChH----------
Confidence 3344445556666777777777666664 556666666666666666666666666665432221110
Q ss_pred CchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhh-hhHHHHHhHhcCChHHHHHHH
Q 035503 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV-ASSLIDMYGKCGDLEEARKVF 240 (788)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~ 240 (788)
+......+.. ..|+........+.+...|++++|.+.++.+++.. +++... ...+.......|+.++|++.|
T Consensus 98 ----~~~~~~~~~~--~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L 170 (1157)
T PRK11447 98 ----YRSSRTTMLL--STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQL 170 (1157)
T ss_pred ----HHHHHHHHHh--cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHH
Confidence 0000001100 12333334455566788999999999999998765 444322 111222233459999999999
Q ss_pred hcCCCC---CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCC----------------CCHH---HHHHHHHHhcCcCC
Q 035503 241 DGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE----------------PTRV---SVTSILSASANLDA 298 (788)
Q Consensus 241 ~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~~~ 298 (788)
+++... +...+..+...+...|++++|++.++++...... ++.. .+...+..+-....
T Consensus 171 ~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~ 250 (1157)
T PRK11447 171 QRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS 250 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH
Confidence 999653 4557888889999999999999999998754210 0000 11111222222223
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHh
Q 035503 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378 (788)
Q Consensus 299 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~ 378 (788)
.+.+...+.........|... .......+...|++++|+..|++..+.++ .+..++..+..+|.
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P---------------~~~~a~~~Lg~~~~ 314 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANP---------------KDSEALGALGQAYS 314 (1157)
T ss_pred HHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHH
Confidence 344445554443333233322 23446778899999999999999877655 45668888999999
Q ss_pred hcCChHHHHHHHHhccc--CCh---hHHH------------HHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 035503 379 KCERIDNAKQVFNSIIL--RDV---VLWN------------TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441 (788)
Q Consensus 379 ~~~~~~~A~~~~~~~~~--~~~---~~~~------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 441 (788)
+.|++++|+..|++... |+. ..|. .....+.+.|++++|+..|++++... +.+...+..+..
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~ 393 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGD 393 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 99999999999998864 221 1121 22446778999999999999999873 345667778899
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCC--------CCHHHHHHHHHHh
Q 035503 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK--------PSTTTITCALSAC 513 (788)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------p~~~~~~~ll~~~ 513 (788)
.+...|++++|++.|+++.+.. +.+...+..+...|. .++.++|+.+++.+...... .....+......+
T Consensus 394 ~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 394 VAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999997652 234566777777775 46789999998876432100 0112344566678
Q ss_pred hccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHH
Q 035503 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALA 590 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~ 590 (788)
...|++++|...++++++..| .+..++..++..|.+.|++++|...++.+.. .+...+..+...+...|+.++|+.
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~ 550 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALA 550 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 889999999999999999988 6778889999999999999999999997643 344556666667788999999999
Q ss_pred HHHHHHHcCCCCCHh---------HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHH
Q 035503 591 LFKNLQQKGIDPDSI---------TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 591 ~~~~m~~~~~~p~~~---------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
.++++......++.. .+..+...+...|+.++|+.+++. .+++...+..++..+.+.|+.++|++
T Consensus 551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 998864432222221 123455678899999999998862 23456677889999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 662 VILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 662 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
.|+++ ...| +...+..++..+...|++++|+..++++++..|+++..+..++.++...|++++|.+++++++.....
T Consensus 625 ~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 625 AYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 99998 3344 46789999999999999999999999999999999999999999999999999999999999876543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.4e-25 Score=251.33 Aligned_cols=642 Identities=10% Similarity=-0.005 Sum_probs=455.4
Q ss_pred cHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHH
Q 035503 46 SYFHQISSL--SKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV 123 (788)
Q Consensus 46 ~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (788)
++.-+..+. ...|++++|++.|+..++.. |-+..++..|.+.|...|+.++|....++.++.. |.|...+..+.
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La 119 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLA 119 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHH
Confidence 333344433 44599999999999999866 2336788999999999999999999999999986 67787777764
Q ss_pred HHHhccCChHHHHHHhccCC--CC-CcccHHHHHHH--------HHcCCCchHHHHHHHHHHHCCCCCCcccHHHH-HHH
Q 035503 124 VFYAKCDALDVASRLFCRLR--VK-NVFSWAAIIGL--------NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV-LKA 191 (788)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~ 191 (788)
.. ++.++|..+++++. .| +...+..+... |.+. ++|...++ .......|+..+.... .+.
T Consensus 120 ~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 120 AI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQR 191 (987)
T ss_pred Hh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHH
Confidence 43 99999999999984 33 33444444444 5555 55555555 3333344455555555 889
Q ss_pred hcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHh-cCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHH
Q 035503 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK-CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270 (788)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 270 (788)
|...|+++++..++..+.+.+ +.+......|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|..+
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999998 5556667778788888 477 8999998876666888999999999999999999999
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChhHHHHHHHhcCCCC
Q 035503 271 FYEMTLEGVE-PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD-NVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348 (788)
Q Consensus 271 ~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 348 (788)
++++...-.. |+..++..++.-+.... ..+..-+.. .+.++ ......++..+.+.++++.+.++.. ..+.
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 341 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANP--VQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA--TLPA 341 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCch--hhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCCc
Confidence 9998765333 66666655544333221 111111111 11111 1223345888999999998877743 2221
Q ss_pred chhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 035503 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNTLLAAYADLGRSGEASRLFYQMQ 425 (788)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 425 (788)
... ..+... .....+...++...+..+-.. +......+.-...+.|+.++|..+|++..
T Consensus 342 ~~~--~~~r~~----------------~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~ 403 (987)
T PRK09782 342 NEM--LEERYA----------------VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRY 403 (987)
T ss_pred chH--HHHHHh----------------hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence 110 011100 011224455555555555322 44555555556677888888888888877
Q ss_pred Hc--CCCCchhHHHHHHHHHHhcCC---HHHHHHH----------------------HHHhhh-CCC-CC--ChhhHHHH
Q 035503 426 LE--GISPNIISWNSVILGFLRNGQ---MNEAKDM----------------------FLQMQS-LGV-QP--NLITWTTL 474 (788)
Q Consensus 426 ~~--~~~~~~~~~~~ll~~~~~~g~---~~~A~~~----------------------~~~~~~-~g~-~~--~~~~~~~l 474 (788)
.. ...++......++..|.+.+. ..++..+ +..... .+. ++ +...|..+
T Consensus 404 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~L 483 (987)
T PRK09782 404 PFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRL 483 (987)
T ss_pred CCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHH
Confidence 63 112333344466677766655 2333222 222211 111 33 56777888
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCH
Q 035503 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 554 (788)
..++.. +++++|+..+.+.... .|+......+..++...|++++|...++.+....+ ....+..++.++.+.|+.
T Consensus 484 G~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p--~~~a~~~la~all~~Gd~ 558 (987)
T PRK09782 484 AKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM--SNEDLLAAANTAQAAGNG 558 (987)
T ss_pred HHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHCCCH
Confidence 877776 8899999988888764 57765544555556789999999999999766533 344567778899999999
Q ss_pred HHHHHHHhhCCCCChhhHH---HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcH
Q 035503 555 HQAKRVFDISPSKELPVYN---AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631 (788)
Q Consensus 555 ~~A~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 631 (788)
++|...++.....++...+ .+...+...|++++|+..+++.++. .|+...+..+..++.+.|++++|+..|++++
T Consensus 559 ~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 559 AARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999877664433333 3334445569999999999998875 5678888888889999999999999999987
Q ss_pred hhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 035503 632 SDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 632 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
.+.|+ ...+..++.++...|+.++|++.++++ ...| +...+..++.++...|++++|+..++++++++|++..+
T Consensus 637 ---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 637 ---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred ---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 45566 566779999999999999999999987 3444 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 709 YVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 709 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
....+++..+..+++.|.+.+++.....+
T Consensus 714 ~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 714 TPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999998887766554
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=3e-24 Score=240.59 Aligned_cols=584 Identities=11% Similarity=0.035 Sum_probs=383.1
Q ss_pred cCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCC--CCcccHHHHHHHHHcCCCchHHHH
Q 035503 91 YKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV--KNVFSWAAIIGLNCRVGLSEKALI 168 (788)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 168 (788)
..|++++|...++++++.. |.++.++..|...|...|+.++|+..+++... |+...|..++..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d---P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV---PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHH
Confidence 3366667777777776665 44466666666666666666666666655532 2112222222111 55555555
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHH--------hHhcCChHHHHHHH
Q 035503 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM--------YGKCGDLEEARKVF 240 (788)
Q Consensus 169 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~ 240 (788)
+|+++.. .. +.+..++..+... |.+.+...++++
T Consensus 130 ~ye~l~~-----------------------------------~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-- 171 (987)
T PRK09782 130 TVEELLA-----------------------------------QQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-- 171 (987)
T ss_pred HHHHHHH-----------------------------------hC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--
Confidence 5555554 33 3333344444443 555555555555
Q ss_pred hcCCCCC--cchHHHH-HHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-cCChhHHHHHHHHHHHhCCCC
Q 035503 241 DGMIARN--VVAWNSM-IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN-LDALDEGKQAHAVAVINGMEL 316 (788)
Q Consensus 241 ~~~~~~~--~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~ 316 (788)
.+...++ ....... ...|.+.|++++|++++.++.+.+. .+..-...+..++.. .++ +.+..++.. .+..
T Consensus 172 lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~ 245 (987)
T PRK09782 172 DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFT 245 (987)
T ss_pred HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hccc
Confidence 2222232 3323333 6777777777778888777777652 233334555555555 355 555555332 3335
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHHHhcCC-----CCchhHHHHHHHHHHc-----C----CCc---hhHHHHHHHHHhh
Q 035503 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVE-----RDIVTWNLLIASYVQS-----G----QSD---VVVASSIVDMYAK 379 (788)
Q Consensus 317 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~-----~----~~~---~~~~~~l~~~~~~ 379 (788)
+..+...+++.|.+.|+.++|.++++++.. ++..+|--.+.-.... . +.. ......+++.+.+
T Consensus 246 d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (987)
T PRK09782 246 DPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLK 325 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHh
Confidence 667777888888888888888888877743 2222332222211111 0 001 1123445888899
Q ss_pred cCChHHHHHHHHhcccCChhHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 035503 380 CERIDNAKQVFNSIILRDVVLWNTLLAA--YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFL 457 (788)
Q Consensus 380 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 457 (788)
.+.++.++++.. ....+.. ..++. ....+...++...++.|.+.. +-+....-.+.....+.|+.++|..+|+
T Consensus 326 ~~~~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~ 400 (987)
T PRK09782 326 EGQYDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLL 400 (987)
T ss_pred ccHHHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999998887743 3333332 22222 233467778888888887762 3355566666667789999999999999
Q ss_pred Hhhh--CCCCCChhhHHHHHHHHHhCCC---chHHHHH----------------------HHHHHhC-CC-CC--CHHHH
Q 035503 458 QMQS--LGVQPNLITWTTLISGLTQNSC---GNEAILF----------------------FQEMLET-GI-KP--STTTI 506 (788)
Q Consensus 458 ~~~~--~g~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-~~-~p--~~~~~ 506 (788)
.... ....++......++..|.+.+. ..++..+ +...... +. ++ +...+
T Consensus 401 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~ 480 (987)
T PRK09782 401 QRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAW 480 (987)
T ss_pred HhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHH
Confidence 9854 2223344555677888877766 3333333 1111111 12 23 45566
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCC
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVYNAMISGYAMHGL 584 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 584 (788)
..+..++.. ++.++|...+.......|. ......++..+...|++++|...|+++.. ++...+..++.++.+.|+
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd--~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd 557 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQRQPD--AWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGN 557 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCC
Confidence 666666655 8899999989888887752 33344456666799999999999987654 445567788889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 035503 585 AVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663 (788)
Q Consensus 585 ~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (788)
.++|+..+++.++.. |+. ..+..+...+...|++++|+..|++.+ .+.|+...+..++.++.+.|+.++|+..+
T Consensus 558 ~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 558 GAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred HHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998864 433 333333444556799999999999997 55688888899999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 664 LTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 664 ~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+++ ...|+ ...+..++.++...|++++|+..++++++.+|+++.++..++.++...|++++|+..+++..+..+
T Consensus 633 ~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 633 RAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 998 34454 567888899999999999999999999999999999999999999999999999999999987663
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=9.4e-25 Score=215.34 Aligned_cols=442 Identities=16% Similarity=0.185 Sum_probs=338.9
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 035503 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333 (788)
Q Consensus 254 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 333 (788)
|..-..+.|++.+|.+.-...-..+ ..+..+...+-..+.+..+.+...+.-...++.. +.-..+|..+.+.+-..|+
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhch
Confidence 3444445666666666544433221 1222222222233334444443333322222222 2235567778888888888
Q ss_pred hhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHH---HHHHHHHHH
Q 035503 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW---NTLLAAYAD 410 (788)
Q Consensus 334 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~ 410 (788)
+++|+.+++.+.+.++ .....|..+..++...|+.+.|...|....+-|+..| +.+....-.
T Consensus 132 ~~~al~~y~~aiel~p---------------~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 132 LQDALALYRAAIELKP---------------KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHHHHHhcCc---------------hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHh
Confidence 8888888888876655 3344667777888888888888888877765444332 334445556
Q ss_pred cCChhHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhhHHHHHHHHHhCCCchHHH
Q 035503 411 LGRSGEASRLFYQMQLEGISPN-IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN-LITWTTLISGLTQNSCGNEAI 488 (788)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~ 488 (788)
.|+.++|...+.++++. .|. ...|..|...+..+|+...|+..|++.... .|+ ...|-.|...|...+.+++|+
T Consensus 197 ~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred hcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHH
Confidence 78899999988888876 333 567788888899999999999999998765 233 577888999999999999999
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-
Q 035503 489 LFFQEMLETGIKPST-TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS- 566 (788)
Q Consensus 489 ~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 566 (788)
..|.+... ..|+. ..+..+...|...|.++.|+..++++++..| .-+..|+.|+.++-..|++.+|...|+....
T Consensus 273 s~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99998887 45664 4666677778899999999999999999888 6778999999999999999999999987664
Q ss_pred --CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cch
Q 035503 567 --KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD-SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEH 642 (788)
Q Consensus 567 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~ 642 (788)
....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|.+.|++++|+..|++++ .+.|+ ...
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHH
Confidence 3456889999999999999999999999877 5665 4678889999999999999999999987 78898 688
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
|+.++..|...|+.++|+..+.++ ...|. ...+++|+..|...|+..+|+..|+.+++++||.+.+|.+|+..+---.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999888 45565 4588999999999999999999999999999999999999999877666
Q ss_pred CcHH
Q 035503 721 RWNE 724 (788)
Q Consensus 721 ~~~~ 724 (788)
+|.+
T Consensus 505 dw~D 508 (966)
T KOG4626|consen 505 DWTD 508 (966)
T ss_pred cccc
Confidence 6655
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.9e-21 Score=202.81 Aligned_cols=668 Identities=12% Similarity=0.043 Sum_probs=472.4
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCCcc---cHHHHHHHhccCC-----------CchhHHHHHHH
Q 035503 43 LYKSYFHQISSLSKEKQIREAVDLLTEMKCRNF----QIGPE---IYGELLQGCVYKR-----------DMYTGQQIHAR 104 (788)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~---~~~~ll~~~~~~~-----------~~~~a~~~~~~ 104 (788)
....|-.....|...|..++.+.+++.-....- .+... .+..+..-++..+ -+..|...|..
T Consensus 40 ~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~ 119 (1018)
T KOG2002|consen 40 PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDL 119 (1018)
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhH
Confidence 344799999999999999999998876551110 11111 1222222221221 12334444444
Q ss_pred HHHhCCCCCCchhHhhHHHHHHhccCC--hHHHHHHhccCCCCCcc-cHHHHHHHH--HcCCCchHHHHHHHHHHHCC--
Q 035503 105 ILKNGDFFARNEYVETKLVVFYAKCDA--LDVASRLFCRLRVKNVF-SWAAIIGLN--CRVGLSEKALIGFVEMQEDG-- 177 (788)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~-~~~~li~~~--~~~g~~~~A~~~~~~m~~~~-- 177 (788)
+-+.. ...+..++..-+ .|...|+ ++.|...|..+...+.. ...-+..++ ...|++..|+.+|.......
T Consensus 120 A~ki~--m~~~~~l~~~~~-~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~ 196 (1018)
T KOG2002|consen 120 ADKID--MYEDSHLLVQRG-FLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPA 196 (1018)
T ss_pred HHHhh--ccCcchhhhhhh-hhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc
Confidence 44333 222222221111 1222333 58888888776432221 122233343 45689999999999976543
Q ss_pred CCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhc---CChHHHHHHHhcC---CCCCcchH
Q 035503 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC---GDLEEARKVFDGM---IARNVVAW 251 (788)
Q Consensus 178 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~---~~~~~~~~ 251 (788)
..||+.. .+-.++.+.++.+.|+..|..++..+ |.++.++-.|.-.-... ..+..+...+... ...|++..
T Consensus 197 ~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l 273 (1018)
T KOG2002|consen 197 CKADVRI--GIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVAL 273 (1018)
T ss_pred cCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHH
Confidence 3455432 23344568999999999999999887 34455444443333333 3355566666555 33488999
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 035503 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGV--EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329 (788)
Q Consensus 252 ~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (788)
+.|...|.-.|+++.++.+...+...-. ..-...|..+.+++-..|+++.|...|....+.....-...+..|..+|+
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 9999999999999999999999987531 12345688899999999999999999998887754443455667899999
Q ss_pred hcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcC----ChHHHHHHHHhcccC---ChhHHH
Q 035503 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE----RIDNAKQVFNSIILR---DVVLWN 402 (788)
Q Consensus 330 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~ 402 (788)
+.|+++.+...|+++....+ .+..+...|...|...+ ..+.|..++.+...+ |...|-
T Consensus 354 ~~~dle~s~~~fEkv~k~~p---------------~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLP---------------NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCc---------------chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 99999999999999876555 23334445555555443 567788888777644 556676
Q ss_pred HHHHHHHHcCChhHHHHHHHHHH----HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCh------h
Q 035503 403 TLLAAYADLGRSGEASRLFYQMQ----LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL---GVQPNL------I 469 (788)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---g~~~~~------~ 469 (788)
.+...+... +...++..|..+. ..+-.+.....|.+...+...|++++|...|+..... -..++. .
T Consensus 419 ~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 419 ELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLT 497 (1018)
T ss_pred HHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhH
Confidence 666666544 4444477777654 3455678889999999999999999999999987543 122222 2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (788)
+-..+..++-..++++.|.+.|..+.+. .|+.. .+..++......+...+|...+..++..+- .++.++..+++.|
T Consensus 498 ~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 498 LKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLH 574 (1018)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHH
Confidence 3334566677788999999999999984 56654 444454444456788999999999998776 7888999999999
Q ss_pred HHcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHH------------hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 035503 549 AKCGNIHQAKRVFDISPS-----KELPVYNAMISGYA------------MHGLAVEALALFKNLQQKGIDPDSITFTNIL 611 (788)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 611 (788)
.+..++..|.+-|+.+.+ +|..+.-+|++.|. ..+..++|+++|.+.+... +-|...-+.+.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIg 653 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIG 653 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchh
Confidence 999999999886654432 46666666666554 2356778999999988753 33677778888
Q ss_pred HHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 035503 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM----PCDPDAHIIGSLLSTCVKSNE 687 (788)
Q Consensus 612 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~ 687 (788)
-.++..|++.+|..+|..+.+.. .....+|..++++|..+|++-.|+++|+.+ ....+..+.+.|++++...|.
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 88999999999999999997642 345678889999999999999999999887 234678899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC-------------------CCcHHHHHHHHHHHHCCCc
Q 035503 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAAS-------------------GRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 688 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~ 738 (788)
+.+|...+.+++...|.++...++++.+..+. +..++|.++|+.+...+-+
T Consensus 732 ~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999988887664 3556788888888877654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=5.2e-24 Score=210.15 Aligned_cols=360 Identities=16% Similarity=0.176 Sum_probs=316.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHH-HHHH
Q 035503 367 VVVASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS-VILG 442 (788)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~ 442 (788)
...|..+...+...|++++|+..++.+.+. .+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 447888999999999999999999988743 4678999999999999999999999999875 576655444 4444
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCchHH
Q 035503 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST-TTITCALSACTDVASLRN 521 (788)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 521 (788)
....|+.++|...|.+..+.. +.-.+.|+.|...+..+|+...|++.|++..+ +.|+. ..|..+...|...+.++.
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 556899999999998886552 22467899999999999999999999999987 56764 588889999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 035503 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE---LPVYNAMISGYAMHGLAVEALALFKNLQQK 598 (788)
Q Consensus 522 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 598 (788)
|...+.++....| ....++..++-.|..+|.+|.|+..|++..+.+ +.+|+.|..++...|+..+|...|.+.+..
T Consensus 271 Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 271 AVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 9999999999888 777888899999999999999999999877633 358999999999999999999999998885
Q ss_pred CCCCC-HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HH
Q 035503 599 GIDPD-SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HI 674 (788)
Q Consensus 599 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~ 674 (788)
.|+ +...+.|...+...|.+++|..+|+... .+.|. ...++.|+..|.++|++++|+..++++ ..+|.. ..
T Consensus 350 --~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 350 --CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred --CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 454 5778889999999999999999999886 66787 567889999999999999999999998 677775 68
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+++++..|...|+.+.|+..|.++++.+|..++++.+|+.+|..+|+..+|++-|+..++..+
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999999999999988664
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.4e-21 Score=200.16 Aligned_cols=650 Identities=12% Similarity=0.063 Sum_probs=457.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCC----CCCch-hHhhHHHHHHhcc-------
Q 035503 62 EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDF----FARNE-YVETKLVVFYAKC------- 129 (788)
Q Consensus 62 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~-~~~~~l~~~~~~~------- 129 (788)
+|-+++.-+...+ ..-.+|..+...|+++|..++.+.+++........ +..+. ..++.|...|+..
T Consensus 26 D~~ev~~IL~~e~--a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~ 103 (1018)
T KOG2002|consen 26 DATEVLSILKAEQ--APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKK 103 (1018)
T ss_pred ChHHHHHHHHHhc--CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445554444443 23357999999999999999999999887622100 11111 1233333333222
Q ss_pred ----CChHHHHHHhccCCCCCcccHHHH---HHHHHcCCC--chHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchH
Q 035503 130 ----DALDVASRLFCRLRVKNVFSWAAI---IGLNCRVGL--SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200 (788)
Q Consensus 130 ----g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 200 (788)
.-...|..+|+....-+...+..+ -..|...|+ .+.|...|....+.. ++|...+..-.......+++..
T Consensus 104 ~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~ 182 (1018)
T KOG2002|consen 104 DEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRG 182 (1018)
T ss_pred chhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHH
Confidence 123344455544332222222221 223444444 488999998887652 3343333333333357889999
Q ss_pred HHHHHHHHHHHc--CCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHH---HHC---CChhHHHHHHH
Q 035503 201 GRAVHGYVLKVG--FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY---VQN---GLNEEAIRVFY 272 (788)
Q Consensus 201 a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~~---g~~~~a~~~~~ 272 (788)
|..+|..++... .++|+. -.+...+.+.|+.+.|+..|.+..+-|+..-++++... ... ..+..++.++.
T Consensus 183 al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~ 260 (1018)
T KOG2002|consen 183 ALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQ 260 (1018)
T ss_pred HHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 999999977665 345543 34456778999999999999999776655444443321 122 23455666665
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCChhHHHHHHHhcCCCCch
Q 035503 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL--DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350 (788)
Q Consensus 273 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 350 (788)
..-... .-|+...+.|.+-+...|+++.+..+...+....... -...|-.+..+|-..|++++|...|-+..+.+.
T Consensus 261 ~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~- 338 (1018)
T KOG2002|consen 261 RAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN- 338 (1018)
T ss_pred HHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-
Confidence 554432 3477778889999999999999999999988875322 233577889999999999999999988876554
Q ss_pred hHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc---CChhHHHHHHHHHHHcC----ChhHHHHHHHH
Q 035503 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL---RDVVLWNTLLAAYADLG----RSGEASRLFYQ 423 (788)
Q Consensus 351 ~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g----~~~~a~~~~~~ 423 (788)
......+..|+.+|.+.|+++.+...|+.+.. .+..+...+...|...+ ..+.|..++.+
T Consensus 339 -------------d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 339 -------------DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred -------------CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 12233566789999999999999999999863 34566777777777765 56778888887
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh----hhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhC--
Q 035503 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM----QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-- 497 (788)
Q Consensus 424 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 497 (788)
..+.- +.|...|..+...+....-+ .++.+|..+ ...+..+.+...|.+...+...|++++|...|+.....
T Consensus 406 ~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 406 VLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 77663 55777787777666655444 447777654 45566678888999999999999999999999998764
Q ss_pred -CCCCCH-----H-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---C
Q 035503 498 -GIKPST-----T-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---K 567 (788)
Q Consensus 498 -~~~p~~-----~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 567 (788)
...++. . +--.+.......++++.|.+.|..+++..| .-...|..++-+....+...+|...++.+.. .
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 123333 1 223345556667899999999999999887 5566666666555566889999999986654 6
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHhhc------------cCcHHHHHHHHHhcHhhc
Q 035503 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNACSH------------AGLVNEGLELFVGMFSDH 634 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~------------~g~~~~A~~~~~~~~~~~ 634 (788)
++..|.-++..+.+...+..|.+-|......- ..+|..+...|.+.|.+ .+..+.|+++|.++++
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~-- 640 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR-- 640 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--
Confidence 77788889989999999999998777765532 23577777777775543 2456677888877763
Q ss_pred CCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchH
Q 035503 635 QVKP-SMEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE--PDNPGNY 709 (788)
Q Consensus 635 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 709 (788)
..| +...-+.++-.+...|++.+|..+|.+.. ......+|.+++..|..+|++-.|+++|+..++.. -+++.+.
T Consensus 641 -~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 641 -NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred -cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 334 35555688999999999999999999983 22355689999999999999999999999998853 3478899
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
..|+.++++.|++.+|.+.+...+...+
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999888776554
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=5.4e-20 Score=203.94 Aligned_cols=426 Identities=14% Similarity=0.045 Sum_probs=255.3
Q ss_pred chHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 035503 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328 (788)
Q Consensus 249 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (788)
..+......+.+.|++++|+..|++.+. +.|+...|..+..++...|+++.|...+..+++.. +.+...+..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3566777788889999999999998876 45777777777777777888888888777777664 23445566677777
Q ss_pred HhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHH
Q 035503 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408 (788)
Q Consensus 329 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 408 (788)
...|++++|+.-|..+...+. .+......++..+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~----------------------------- 240 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDG---------------FRNEQSAQAVERLLK----------------------------- 240 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCC---------------CccHHHHHHHHHHHH-----------------------------
Confidence 777777777666544322111 000000011110000
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhhHHHHHHH---HHhCCCc
Q 035503 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN-LITWTTLISG---LTQNSCG 484 (788)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~---~~~~g~~ 484 (788)
..+........... +++...+..+ ..|...........-+....+. .+. ...+..+... ....+++
T Consensus 241 ------~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y 310 (615)
T TIGR00990 241 ------KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESY 310 (615)
T ss_pred ------HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhH
Confidence 11111111111111 1111111111 1111111111111111111000 000 0111111111 1223566
Q ss_pred hHHHHHHHHHHhCC-CCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHh
Q 035503 485 NEAILFFQEMLETG-IKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562 (788)
Q Consensus 485 ~~A~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (788)
++|.+.|++....+ ..|+ ...+..+...+...|++++|...++.+++..| .....+..++.++...|++++|+..|+
T Consensus 311 ~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~ 389 (615)
T TIGR00990 311 EEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 67777777766543 2232 23455555556667777777777777776665 445566677777777777777777776
Q ss_pred hCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC
Q 035503 563 ISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639 (788)
Q Consensus 563 ~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 639 (788)
.... .+...|..++..+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|+++++. .|+
T Consensus 390 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~ 465 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPE 465 (615)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC
Confidence 5443 345677777778888888888888888877653 224555666677778888888888888877642 344
Q ss_pred -cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 640 -MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-------H-IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 640 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
...+..++.++...|++++|++.|+++ ...|+. . .++..+..+...|++++|+..++++++++|++..++
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~ 545 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAV 545 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 567777888888888888888888776 233321 1 111122223446999999999999999999998899
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..++.+|...|++++|..+|++..+..
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999987654
No 18
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=9.3e-16 Score=153.47 Aligned_cols=495 Identities=12% Similarity=0.071 Sum_probs=358.7
Q ss_pred ccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHHCCChhHHHHH
Q 035503 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI---ARNVVAWNSMIVGYVQNGLNEEAIRV 270 (788)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~ 270 (788)
...+.+.|+-++....+.- +.+...| -+|.+..-++.|..+++... ..+...|-+-...=-.+|+.+....+
T Consensus 388 elE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 4444555555555555442 3333333 33455555666666665552 23555555544444556666666655
Q ss_pred HHHH----HHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChhHHHHHHHhc
Q 035503 271 FYEM----TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD--NVLGSSIINFYSKVGLLEDAEVVFSRM 344 (788)
Q Consensus 271 ~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 344 (788)
+++- ...|+..+...|..=...|-..|..-....+...++..|++.. ..+|..-.+.|.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 5443 3346666666666666666666666666666666666554432 234444445555555555555544443
Q ss_pred CCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 035503 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424 (788)
Q Consensus 345 ~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 424 (788)
.+-.+ .+...|......--..|..++...+|+++
T Consensus 543 lqvfp----------------------------------------------~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 543 LQVFP----------------------------------------------CKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred Hhhcc----------------------------------------------chhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33222 24455666666666678888888888888
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH
Q 035503 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504 (788)
Q Consensus 425 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 504 (788)
... ++-....|......+-..|++..|..++....+.... +...|-+-+.......++++|..+|.+... ..|+..
T Consensus 577 v~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeR 652 (913)
T KOG0495|consen 577 VEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTER 652 (913)
T ss_pred HHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcch
Confidence 877 3344455566666777789999999999888665322 677888888888899999999999988876 467777
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 035503 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAM 581 (788)
Q Consensus 505 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 581 (788)
.|.--+..-...+..++|.++++..++.-+ .-..+|..+++.+.+.++++.|...|..-.+ ..++.|-.|...--+
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 777777777778889999999988888776 5677888999999999999999999986655 345689999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHH
Q 035503 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
.|..-.|..++++..-++ +-+...|...+..-.+.|..+.|..+..+++++ .+.+...+..-|.+..+.++-..+.+
T Consensus 732 ~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred hcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHH
Confidence 999999999999988775 447788888999999999999999999888763 44556777788888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCC
Q 035503 662 VILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741 (788)
Q Consensus 662 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 741 (788)
.++++. .|+.+..+++..+....+++.|+.-|+++++.+|++..+|..+...+...|.-++-.+++++..... +..
T Consensus 809 ALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~h 884 (913)
T KOG0495|consen 809 ALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTH 884 (913)
T ss_pred HHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCC
Confidence 888775 4667788888999999999999999999999999999999999999999999999999999887654 456
Q ss_pred ceeEEEECCe
Q 035503 742 GCSWIQIGEE 751 (788)
Q Consensus 742 ~~~~~~~~~~ 751 (788)
|..|..+..+
T Consensus 885 G~~W~avSK~ 894 (913)
T KOG0495|consen 885 GELWQAVSKD 894 (913)
T ss_pred CcHHHHHhhh
Confidence 7788766543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.9e-18 Score=188.41 Aligned_cols=427 Identities=11% Similarity=0.014 Sum_probs=266.9
Q ss_pred hhhHHHHHhHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 035503 219 VASSLIDMYGKCGDLEEARKVFDGMI--ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296 (788)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 296 (788)
.+......+.+.|++++|+..|++.+ .|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 45667888999999999999999984 4677789999999999999999999999998763 33567888899999999
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHH
Q 035503 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376 (788)
Q Consensus 297 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~ 376 (788)
|++++|...+..+...+...+.... .++..+........+...++.-... . .....+...
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~l~~~~~~-~------------------~~~~~~~~~ 267 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSA-QAVERLLKKFAESKAKEILETKPEN-L------------------PSVTFVGNY 267 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC-C------------------CCHHHHHHH
Confidence 9999999888766555322222211 1111111111112222222221110 0 011111111
Q ss_pred HhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-hHHHHHHHH---HHhcCCHHHH
Q 035503 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI-ISWNSVILG---FLRNGQMNEA 452 (788)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~---~~~~g~~~~A 452 (788)
+ ..........-+....+ ..++. ..+..+... ....+++++|
T Consensus 268 ~--------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 268 L--------------------------------QSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred H--------------------------------HHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHH
Confidence 1 00001111110110000 00100 001111100 1223566677
Q ss_pred HHHHHHhhhCC-CCC-ChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHH
Q 035503 453 KDMFLQMQSLG-VQP-NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGYL 529 (788)
Q Consensus 453 ~~~~~~~~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 529 (788)
...|+...+.+ ..| ....|..+...+...|++++|+..|++.++. .|+ ...+..+...+...|++++|...++.+
T Consensus 314 ~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777665543 112 3445666666677777777777777777663 344 445666666677777777777777777
Q ss_pred HHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH
Q 035503 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606 (788)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 606 (788)
++..+ .+..++..++.++...|++++|+..|+.... .+...|..+..++.+.|++++|+..|++.+... +.+...
T Consensus 392 l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~ 469 (615)
T TIGR00990 392 LKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDV 469 (615)
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHH
Confidence 77665 5566777778888888888888888876544 334567777888888888888888888877642 334567
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc-chH-------HHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHH
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM-EHF-------GCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIG 676 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~-------~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~ 676 (788)
+..+..++...|++++|+..|++++. +.|+. ..+ ......+...|++++|.++++++ ...|+. ..+.
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 77777788888888888888888763 33431 111 11222334468899999888886 444544 4678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.++..+...|++++|+..+++++++.+....
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 8888899999999999999999988776433
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=2.2e-18 Score=190.01 Aligned_cols=325 Identities=11% Similarity=0.049 Sum_probs=149.1
Q ss_pred HHHHHhhcCChHHHHHHHHhcc---cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 035503 373 IVDMYAKCERIDNAKQVFNSII---LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449 (788)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (788)
++..+.+.|++++|..+++... ..+...+..++.+....|++++|+..++++.... +.+...+..+...+...|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 3444444555555555555443 1223334444444445555555555555555441 22233444444555555555
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHH
Q 035503 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529 (788)
Q Consensus 450 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 529 (788)
++|...|+++... -+.+...+..+...+...|++++|...++++... .|+.......+..+...|++++|...++.+
T Consensus 127 ~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555433 1123344445555555555555555555554432 222221111122344455555555555555
Q ss_pred HHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHH----HHHHHHHHHHcCCCC
Q 035503 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVE----ALALFKNLQQKGIDP 602 (788)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~~~~p 602 (788)
++..+..+......++..+...|++++|+..++.... .+...+..+...+...|++++ |+..|++..+.. +.
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~ 282 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD 282 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence 4443323333333344455555555555555544332 223344445555555555543 455555554432 11
Q ss_pred CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHH-HHHHH
Q 035503 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP-CDPDAHI-IGSLL 679 (788)
Q Consensus 603 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~ 679 (788)
+...+..+...+...|++++|+..++++.. ..|+ ...+..++.+|.+.|++++|++.++++. ..|+... +..++
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 233444444455555555555555555442 2233 2333345555555555555555555441 2333222 22233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 680 STCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
.++...|+.++|+..|+++++.+|++
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 44445555555555555555555553
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2e-19 Score=189.75 Aligned_cols=304 Identities=14% Similarity=0.084 Sum_probs=204.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---hhhHHHHHHHHHhC
Q 035503 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN---LITWTTLISGLTQN 481 (788)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 481 (788)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556677777777777777653 23445666777777777777777777777755422111 23456666777777
Q ss_pred CCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 035503 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561 (788)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (788)
|++++|..+|+++.+.. +++..++..++..+...|++++|...++.+.+.++.+....
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 77777777777776532 23445555566666666666666666666655443221100
Q ss_pred hhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC--
Q 035503 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-- 639 (788)
Q Consensus 562 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-- 639 (788)
....+..++..+...|++++|+..|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+
T Consensus 179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~ 248 (389)
T PRK11788 179 ------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYL 248 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhH
Confidence 00124456666777777778888777776643 223455666667777888888888888877642 333
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
...+..++.+|.+.|++++|...++++ ...|+...+..++..+...|++++|+..++++++..|++. .+..+...+..
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~ 327 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhh
Confidence 345667788888888888888888876 3456666667888889999999999999999999999966 44444544443
Q ss_pred ---CCCcHHHHHHHHHHHHCCCccCCc
Q 035503 719 ---SGRWNEVSQVRDIMKEKGLRKNPG 742 (788)
Q Consensus 719 ---~g~~~~A~~~~~~~~~~~~~~~~~ 742 (788)
.|+.+++..++++|.++++++.|+
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 568999999999999988888886
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=4e-18 Score=192.33 Aligned_cols=395 Identities=10% Similarity=0.028 Sum_probs=268.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCCh
Q 035503 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDV 398 (788)
Q Consensus 322 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~ 398 (788)
.-.+......|+.++|++++.+....++ .....+..+...+.+.|++++|..+++... +.+.
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~---------------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~ 83 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQ---------------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND 83 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3444555556666666666655543222 223345566666666666666666666643 2345
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 478 (788)
..+..++..+...|++++|+..++++.... +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l 160 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 556677777788888888888888887762 33344 6677777888888888888888886652 22455566677777
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHH------HHHHHHHHh-----hccCch---HHHHHHHHHHHHcC---CCCChhHH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTT------TITCALSAC-----TDVASL---RNGRAIHGYLIRHD---LCLPTPIV 541 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~~---~~~~~~~~ 541 (788)
...|..++|+..++.... .|+.. .....+... ...+.+ ++|...++.+++.- +.......
T Consensus 161 ~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 778888888887776553 23210 111111211 112233 66777888887642 21111111
Q ss_pred HH---HHHHHHHcCCHHHHHHHHhhCCCCC--hhh--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHhHHHHHH
Q 035503 542 TS---LVDMYAKCGNIHQAKRVFDISPSKE--LPV--YNAMISGYAMHGLAVEALALFKNLQQKGIDP---DSITFTNIL 611 (788)
Q Consensus 542 ~~---l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll 611 (788)
.. .+.++...|++++|+..|+.+...+ .+. -..+..+|...|++++|+..|+++....... .......+.
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11 1223457799999999999887642 122 2235778999999999999999987643111 123455566
Q ss_pred HHhhccCcHHHHHHHHHhcHhhcC----------CCCC---cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHH
Q 035503 612 NACSHAGLVNEGLELFVGMFSDHQ----------VKPS---MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIG 676 (788)
Q Consensus 612 ~~~~~~g~~~~A~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~ 676 (788)
.++...|++++|..+++.+..... -.|+ ...+..++..+...|++++|++.++++ . .+.+...+.
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 678899999999999998865321 1122 124457788899999999999999997 2 334467889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.++..+...|++++|+..++++++++|+++..+..++.++...|++++|..+++.+++..+
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999988654
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=5e-18 Score=187.20 Aligned_cols=329 Identities=9% Similarity=-0.022 Sum_probs=260.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHH
Q 035503 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479 (788)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 479 (788)
....++..+.+.|++++|..+++..+..... +...+..++.++...|++++|...|+++.... +.+...|..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3455677788899999999999998887433 34445556667778999999999999997652 335677888888999
Q ss_pred hCCCchHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 035503 480 QNSCGNEAILFFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558 (788)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (788)
..|++++|...++++... .|+ ...+..+...+...|++++|...++.+....+. +...+..+. .+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~-~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATCL-SFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHcCCHHHHH
Confidence 999999999999999874 454 556777888899999999999999988887774 344444443 478899999999
Q ss_pred HHHhhCCCCC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHH----HHHHHHhc
Q 035503 559 RVFDISPSKE----LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE----GLELFVGM 630 (788)
Q Consensus 559 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~----A~~~~~~~ 630 (788)
..++.+.+.+ ...+..++.++...|++++|+..++++.+.. +.+...+..+...+...|++++ |...|+++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 9998765532 2334556678889999999999999988764 3356677778888999999885 78999988
Q ss_pred HhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 631 FSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 631 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.. +.|+ ...+..++..+.+.|++++|+..++++ ...|+ ...+..++.++...|++++|+..++++++.+|+++.
T Consensus 277 l~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 277 LQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred Hh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 73 4565 567779999999999999999999887 34444 456778888899999999999999999999999887
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
.+..++.++...|++++|...|++..+..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 7777888999999999999999998877654
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=7.9e-16 Score=160.46 Aligned_cols=650 Identities=12% Similarity=0.076 Sum_probs=376.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhcc
Q 035503 50 QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129 (788)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (788)
....+.-+|++++|+.++.+.++.. +.....|..|...|-.+|+.+++...+-.+.-.. |.|...|..+.......
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---PKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHhc
Confidence 3344455599999999999999876 4566789999999999999999988776665554 78889999999999999
Q ss_pred CChHHHHHHhccCCCCCcccHHH---HHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHH----HHHhcccCCchHHH
Q 035503 130 DALDVASRLFCRLRVKNVFSWAA---IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV----LKACGALGWVGFGR 202 (788)
Q Consensus 130 g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~ 202 (788)
|.++.|.-+|.+..+.+...|-. -+..|.+.|+...|.+.|.++.+...+.|-.-+..+ ++.+...++-+.|.
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999886554443443 355788899999999999999876542222222222 22233333334444
Q ss_pred HHHHHHHHHc-CCCchhhhhHHHHHhHhcCChHHHHHHHhcCCC----CCcchHHHHHHHHHHCCChhHHHHHHHHHHHc
Q 035503 203 AVHGYVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA----RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277 (788)
Q Consensus 203 ~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 277 (788)
+.++...+.+ -..+...++.++..|.+...++.|......+.. +|..-|.. + ..++. .-..++. ...
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~----~-~~~~~-~~~~~~~--~~~ 372 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT----D-ERRRE-EPNALCE--VGK 372 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh----h-hhccc-ccccccc--CCC
Confidence 4444443311 122233444444444444444444444333321 11111100 0 00000 0000000 001
Q ss_pred CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHH
Q 035503 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVING--MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355 (788)
Q Consensus 278 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 355 (788)
++.++... ..+.-++......+....+...+.... ...+...|..+.++|...|++..|+.+|..+.....
T Consensus 373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~------ 445 (895)
T KOG2076|consen 373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG------ 445 (895)
T ss_pred CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc------
Confidence 12222222 122223344455555555555555555 344566777788888888888888888877765443
Q ss_pred HHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHHHHHHHHHcCChhHHHHHHHHHH-------
Q 035503 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNTLLAAYADLGRSGEASRLFYQMQ------- 425 (788)
Q Consensus 356 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~------- 425 (788)
..+..+|-.++.+|...|.+++|.+.|+.+... +...--++...+-+.|+.++|.+.+..+.
T Consensus 446 --------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 446 --------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred --------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 233557777888888888888888888877633 33344556667777888888888887743
Q ss_pred -HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----------------------CCChhhHHHHHHHHHhCC
Q 035503 426 -LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV----------------------QPNLITWTTLISGLTQNS 482 (788)
Q Consensus 426 -~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~----------------------~~~~~~~~~li~~~~~~g 482 (788)
..+..|+..........+.+.|+.++-+.+-..|..... .-...+...++.+-.+.+
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~ 597 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKAT 597 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccC
Confidence 223445555556666677777877775555544432210 011111222222222222
Q ss_pred CchHHHHH------HHHHHhCCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHcCCC--CCh---hHHHHHHHHHH
Q 035503 483 CGNEAILF------FQEMLETGIKPST--TTITCALSACTDVASLRNGRAIHGYLIRHDLC--LPT---PIVTSLVDMYA 549 (788)
Q Consensus 483 ~~~~A~~~------~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~---~~~~~l~~~~~ 549 (788)
+......- +.--...|+.-+. ..+..++.++++.+.+++|..+...+.....- ++. ..-...+.+..
T Consensus 598 ~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~ 677 (895)
T KOG2076|consen 598 DDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASL 677 (895)
T ss_pred chHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHH
Confidence 22111111 1111111222221 23445566777788888888888777764321 111 23344455566
Q ss_pred HcCCHHHHHHHHhhCCCC-----Ch---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccCc
Q 035503 550 KCGNIHQAKRVFDISPSK-----EL---PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACSHAGL 619 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~ 619 (788)
..+++..|...++.+... ++ ..||...+...+.++-.--.+++...... .|+. ..+.....-....+.
T Consensus 678 ~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s 755 (895)
T KOG2076|consen 678 YARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNAS 755 (895)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccc
Confidence 778888888887766543 33 35665555555555544334444443332 2222 111122223455677
Q ss_pred HHHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhh--cC--------ChHHHHHHHHhC---C-CCCCHHHHHHHHHHHHh
Q 035503 620 VNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSR--CG--------NLDEALRVILTM---P-CDPDAHIIGSLLSTCVK 684 (788)
Q Consensus 620 ~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~--~g--------~~~~A~~~~~~~---~-~~p~~~~~~~l~~~~~~ 684 (788)
+..|+..|-++. ...|+.+..+ +|+.++.. .+ ..-.+..++.+. . ......++.+++++|..
T Consensus 756 ~~~Al~~y~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~ 832 (895)
T KOG2076|consen 756 FKHALQEYMRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQ 832 (895)
T ss_pred hHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 888888887665 4457766555 55444421 11 123344454443 1 11245678899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCC------------CchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 685 SNETELAEYISEHLLQLEPDN------------PGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
.|-...|+..|+++++..|.+ ..+-++|.-+|..+|+...|.+++++
T Consensus 833 ~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 833 IGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 999999999999999987653 22567888899999999999998764
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.9e-17 Score=186.84 Aligned_cols=333 Identities=11% Similarity=0.017 Sum_probs=220.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhccc---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 035503 369 VASSIVDMYAKCERIDNAKQVFNSIIL---RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445 (788)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 445 (788)
....++.++...|++++|+..+++... .+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+..
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 333444444555555555555554431 2344 6666777777777777777777777762 2234444556666677
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCh------hhHHHHHHHHH-----hCCCc---hHHHHHHHHHHhC-CCCCCHH-HHH--
Q 035503 446 NGQMNEAKDMFLQMQSLGVQPNL------ITWTTLISGLT-----QNSCG---NEAILFFQEMLET-GIKPSTT-TIT-- 507 (788)
Q Consensus 446 ~g~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~p~~~-~~~-- 507 (788)
.+..++|+..++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 7777777777765543 1111 01112222221 12233 6678888887753 1223221 111
Q ss_pred --HHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC-------hhhHHHHHHH
Q 035503 508 --CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE-------LPVYNAMISG 578 (788)
Q Consensus 508 --~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~ 578 (788)
..+.++...|+.++|+..++.+.+.++..+......++.+|...|++++|+..|+.+...+ ...+..+..+
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 1133455668888888888888887653233334446778888999999999888765422 1235566777
Q ss_pred HHhCCCHHHHHHHHHHHHHcCC-----------CCCH---hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchH
Q 035503 579 YAMHGLAVEALALFKNLQQKGI-----------DPDS---ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHF 643 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 643 (788)
+...|++++|+.+++++..... .|+. ..+..+...+...|+.++|++.++++... .|+ ...+
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~ 396 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLR 396 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHH
Confidence 8899999999999999877521 1232 23445666788999999999999998743 354 6677
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 644 GCVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
..++.++...|++++|++.++++ ...|+ ...+...+..+...|++++|+..++++++..|+++.+.
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 79999999999999999999998 44565 55677778888999999999999999999999987554
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=3.4e-18 Score=180.28 Aligned_cols=296 Identities=14% Similarity=0.124 Sum_probs=220.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc---hhHHHHHHHHH
Q 035503 370 ASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN---IISWNSVILGF 443 (788)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~ 443 (788)
.......+...|++++|...|.++... +..++..+...+...|++++|..+++.+...+..++ ...+..+...|
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 334456677889999999999999743 455788899999999999999999999987643222 25678889999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHH
Q 035503 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523 (788)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 523 (788)
.+.|++++|..+|+++.+. .+++..++..++..+...|++++|.+.++.+.+.+..+.....
T Consensus 118 ~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------- 179 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI----------------- 179 (389)
T ss_pred HHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH-----------------
Confidence 9999999999999999765 2346788999999999999999999999999875422221100
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 035503 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600 (788)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 600 (788)
...+..++..+.+.|++++|...|+++.+ .+...+..++..+.+.|++++|+++|+++.+.+.
T Consensus 180 --------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 180 --------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred --------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 01223345555566666666666655432 2234566777788888888888888888876532
Q ss_pred CCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 035503 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLL 679 (788)
Q Consensus 601 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 679 (788)
.....++..++.+|...|++++|...++++.+ ..|+...+..++..+.+.|++++|..+++++ ...|+...+..++
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 22245567777888888999999888888864 3577667778888888999999999988776 5568888888777
Q ss_pred HHHHh---cCCHHHHHHHHHHHHh
Q 035503 680 STCVK---SNETELAEYISEHLLQ 700 (788)
Q Consensus 680 ~~~~~---~g~~~~A~~~~~~~~~ 700 (788)
..+.. .|+.+++...++++++
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHH
Confidence 76553 4577788777777664
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=5.7e-16 Score=170.81 Aligned_cols=184 Identities=13% Similarity=0.041 Sum_probs=123.2
Q ss_pred HHHHCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChh
Q 035503 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRV-SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335 (788)
Q Consensus 257 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 335 (788)
...+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|...++... ............+...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 456889999999999998875 35431 22277777777788888888888877 111222333334466788888888
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHH--cCC
Q 035503 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD--LGR 413 (788)
Q Consensus 336 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~g~ 413 (788)
+|+++|+++.+.++ .++.++..++..+...++.++|++.++++.+.++.....++.++.. .++
T Consensus 120 ~Aiely~kaL~~dP---------------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 120 QALALWQSSLKKDP---------------TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHHHhhCC---------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcch
Confidence 88888888877766 4455666777778888888888888887765444332223333333 455
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 414 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
..+|++.++++.+.. +.+...+..+..++.+.|-...|.++.++-
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 555888888887763 334556667777777777777777666653
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=5.8e-15 Score=162.94 Aligned_cols=446 Identities=12% Similarity=0.042 Sum_probs=277.6
Q ss_pred HHHHHhHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC
Q 035503 222 SLIDMYGKCGDLEEARKVFDGMIARNVV---AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298 (788)
Q Consensus 222 ~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 298 (788)
.-+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.... -.........+...+...|+
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 3444568899999999999998654333 2338888888999999999999998721 12233333334557778899
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHh
Q 035503 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378 (788)
Q Consensus 299 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~ 378 (788)
++.|..+++.+++.... +...+..++..|...++.++|++.++++...++. ...+..++..+.
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~----------------~~~~l~layL~~ 180 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPT----------------VQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc----------------hHHHHHHHHHHH
Confidence 99999999999988644 3566667888999999999999999999877662 223455555555
Q ss_pred hcCChHHHHHHHHhccc--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 035503 379 KCERIDNAKQVFNSIIL--R-DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455 (788)
Q Consensus 379 ~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 455 (788)
..++..+|++.++++.. | +...+..+...+.+.|-...|+++.++ .|+.++-...... +.+.|.+.
T Consensus 181 ~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~ 249 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQ 249 (822)
T ss_pred hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHH
Confidence 56777679999998863 3 556678888889999999888877664 3333222111110 01111111
Q ss_pred HHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhC-CCCCCH-H----HHHHHHHHhhccCchHHHHHHHHHH
Q 035503 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPST-T----TITCALSACTDVASLRNGRAIHGYL 529 (788)
Q Consensus 456 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~ 529 (788)
.+-. ..++..- -. +---.+.|+.-++.+... +-.|.. . ...-.+.++...++..+++..++.+
T Consensus 250 vr~a----~~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 250 VRMA----VLPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred Hhhc----ccccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 1110 0000000 00 000123344444444331 111211 1 1112233455556666666666666
Q ss_pred HHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCC---------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-
Q 035503 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK---------ELPVYNAMISGYAMHGLAVEALALFKNLQQKG- 599 (788)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~- 599 (788)
...+.+.+..+...++++|...++.++|..+|+.+... +......|.-+|...+++++|..+++++.+..
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 66555455556666666666666666666666654321 11223556667777777777777777776521
Q ss_pred ------------CCCCHhH-HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 600 ------------IDPDSIT-FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 600 ------------~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
..||-.. +..++..+...|+..+|++.++++.. .-+-+......+++.+...|++.+|++.++.+
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1122222 23344457788888888888888864 22334667778888888888888888888776
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 667 -PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 667 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
...|+ ..+....+.++...+++++|....+++++..|+++.+.
T Consensus 477 ~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 477 ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 24444 34566677777888888888888888888888877443
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=7e-15 Score=140.01 Aligned_cols=325 Identities=15% Similarity=0.154 Sum_probs=195.9
Q ss_pred CCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHH---hccCCCchhHHHHHHHHHHhCCCCCCch
Q 035503 40 YESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQG---CVYKRDMYTGQQIHARILKNGDFFARNE 116 (788)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 116 (788)
-|..+.+-|+|+.. ..+|+.+++.-+|+.|.+.|++.++..-..|+.. |-.+.-.-.-.+.|-.+.+.| +.+.
T Consensus 112 ~~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~---E~S~ 187 (625)
T KOG4422|consen 112 DPLQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG---EDST 187 (625)
T ss_pred CchhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc---cccc
Confidence 45556667776654 5778999999999999999999988765555544 222232323344455555444 2222
Q ss_pred hHhhHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccC
Q 035503 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196 (788)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 196 (788)
..| +.|++.+ -+|+..| +...++..||.++++--..+.|.++|++-.....+.+..+|+.+|.+-+-.
T Consensus 188 ~sW--------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~- 255 (625)
T KOG4422|consen 188 SSW--------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS- 255 (625)
T ss_pred ccc--------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh-
Confidence 222 3455444 4555554 456789999999999999999999999998888899999999999876533
Q ss_pred CchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhc----C----CCCCcchHHHHHHHHHHCCChhH-H
Q 035503 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG----M----IARNVVAWNSMIVGYVQNGLNEE-A 267 (788)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~----~~~~~~~~~~li~~~~~~g~~~~-a 267 (788)
..+++..+|+...+.||..++|+++....+.|+++.|++.+-+ | .+|...+|..+|..+.+.++..+ +
T Consensus 256 ---~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 256 ---VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred ---ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 3388899999999999999999999999999988877654322 2 33444455555555544444422 2
Q ss_pred HHHHHHHHH----cCCCC----CHHHHHHHHHHhcCcCChhHHHHHHHHHHHhC----CCCchhHHHHHHHHHHhcCChh
Q 035503 268 IRVFYEMTL----EGVEP----TRVSVTSILSASANLDALDEGKQAHAVAVING----MELDNVLGSSIINFYSKVGLLE 335 (788)
Q Consensus 268 ~~~~~~m~~----~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~ 335 (788)
..++.++.. ..++| |..-|...+..|....+.+.|.+++....... +.++.
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~----------------- 395 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ----------------- 395 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH-----------------
Confidence 222222221 11111 33334444444444455555544444333211 01110
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc----CChhHHHHHHHHHHHc
Q 035503 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL----RDVVLWNTLLAAYADL 411 (788)
Q Consensus 336 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~ 411 (788)
.....|..+....|....++.-...++.+.. |+..+...++++....
T Consensus 396 -----------------------------~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~ 446 (625)
T KOG4422|consen 396 -----------------------------HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA 446 (625)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc
Confidence 1111344455555555555666666655542 3445555556666666
Q ss_pred CChhHHHHHHHHHHHcCC
Q 035503 412 GRSGEASRLFYQMQLEGI 429 (788)
Q Consensus 412 g~~~~a~~~~~~m~~~~~ 429 (788)
|.++-.-+++..++..|.
T Consensus 447 ~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 447 NRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred CcchhHHHHHHHHHHhhh
Confidence 666666666666665553
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=5.8e-16 Score=148.11 Aligned_cols=275 Identities=11% Similarity=0.098 Sum_probs=209.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH--HhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCch
Q 035503 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL--TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519 (788)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 519 (788)
.+.+.|+++.|+++++-+.+..-......-+.|-..+ .-..++..|.++-+..+... +-+......-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4678888888888888876553222222222222222 22446777777777666432 33344443334445567889
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 035503 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQ 596 (788)
Q Consensus 520 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 596 (788)
++|...+++++..+. .-......++-.+...|++++|+..|-++. ..+......+...|....+..+|++++.+..
T Consensus 507 dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 999999999888766 444555667778889999999999996543 4677778888999999999999999998876
Q ss_pred HcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 035503 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP-CDPDAHII 675 (788)
Q Consensus 597 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~ 675 (788)
.. ++.|+.....|...|.+.|+-.+|.+.+-.--+ -++.+.++...|+.-|....-+++|+.+|+++. ..|+..-|
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 54 455778888899999999999999887764432 344568899999999999999999999999984 68999999
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 676 GSLLSTC-VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 676 ~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
..++..| ++.|++++|...|+.+....|.+...+..|..+.-..|-
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9988887 567999999999999999999999999999999888875
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=1.4e-13 Score=143.97 Aligned_cols=619 Identities=12% Similarity=0.102 Sum_probs=390.2
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhcc---CCCCCcccHHHHHHHHHcCCCchHH
Q 035503 90 VYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR---LRVKNVFSWAAIIGLNCRVGLSEKA 166 (788)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 166 (788)
...|++++|..++.++++.. |.....|..|...|-..|+..++...+-. +...|-.-|..+..-..+.|+++.|
T Consensus 150 farg~~eeA~~i~~EvIkqd---p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD---PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 34588888999888888885 77888888888888888888888777633 3344566788888888888888888
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchh----hhhHHHHHhHhcCChHHHHHHHhc
Q 035503 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF----VASSLIDMYGKCGDLEEARKVFDG 242 (788)
Q Consensus 167 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~ 242 (788)
.-.|.+.++.. +++...+---...|-+.|+...|..-+.++.....+.|.. ..-..++.|...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888887753 2233333444556777888888888888887776433322 222345556667777888888777
Q ss_pred CCC--C---CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHH--hCCC
Q 035503 243 MIA--R---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI--NGME 315 (788)
Q Consensus 243 ~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~ 315 (788)
... . +...+|.++..|.+...++.+......+......+|..-+.+== .-......... .+..
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~----------~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE----------RRREEPNALCEVGKELS 375 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh----------hccccccccccCCCCCC
Confidence 654 2 33467788888888888888888887777654455544331100 00000000001 1223
Q ss_pred CchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc
Q 035503 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395 (788)
Q Consensus 316 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 395 (788)
++..+ ..++-++.+....+....+.....+.+... ..+...+..+.++|...|++.+|+.+|..+..
T Consensus 376 ~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~------------~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 376 YDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWV------------SDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred ccchh-HhHhhhhhcccccchHHHHHHHHHHhcCCh------------hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 33333 123333344444444444444443333211 24556889999999999999999999998863
Q ss_pred ----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhC--------C
Q 035503 396 ----RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL--------G 463 (788)
Q Consensus 396 ----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------g 463 (788)
.+...|-.+..+|...|.+++|.+.|+..+... +-+...-.+|...+.+.|+.++|.+.+..+... +
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a 521 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACA 521 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcc
Confidence 256789999999999999999999999998862 334556667888899999999999999996422 3
Q ss_pred CCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCC-----CCC-----------------CHHHHHHHHHHhhccCchHH
Q 035503 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-----IKP-----------------STTTITCALSACTDVASLRN 521 (788)
Q Consensus 464 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~ll~~~~~~~~~~~ 521 (788)
..|+...-....+.+.+.|+.++-+.+-.+|+... +-| .......+..+-...++...
T Consensus 522 ~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 601 (895)
T KOG2076|consen 522 WEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNV 601 (895)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHH
Confidence 34455555556677888899888666655554321 111 11222222223222222211
Q ss_pred HHHHHH------HHHHcCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHhhCCCC-----Chh----hHHHHHHHHHhCCC
Q 035503 522 GRAIHG------YLIRHDLCLPT--PIVTSLVDMYAKCGNIHQAKRVFDISPSK-----ELP----VYNAMISGYAMHGL 584 (788)
Q Consensus 522 a~~~~~------~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~l~~~~~~~g~ 584 (788)
..+... -....+...+. ..+..++..+++.+++++|..+...+... +.. .-...+.+.+..++
T Consensus 602 ~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d 681 (895)
T KOG2076|consen 602 MEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARD 681 (895)
T ss_pred hhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCC
Confidence 111111 11112222221 35566788899999999999998766542 221 22356677788999
Q ss_pred HHHHHHHHHHHHHc-CC--CCC-HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc--chHHHHHHHHhhcCChHH
Q 035503 585 AVEALALFKNLQQK-GI--DPD-SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM--EHFGCVVNLLSRCGNLDE 658 (788)
Q Consensus 585 ~~~A~~~~~~m~~~-~~--~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 658 (788)
+..|...++.|... +. .|. ...|+...+...+.++-.--.+++.++. ...|+. ..+...+..+...+.+.-
T Consensus 682 ~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~ 758 (895)
T KOG2076|consen 682 PGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKH 758 (895)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHH
Confidence 99999999998875 11 222 2334434445555555433334443332 223333 222234455677888988
Q ss_pred HHHHHHhC-CCCCCHHHHHH-HHHHHH----------hcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhCCCcHH
Q 035503 659 ALRVILTM-PCDPDAHIIGS-LLSTCV----------KSNETELAEYISEHLLQLEPD--NPGNYVALSNAYAASGRWNE 724 (788)
Q Consensus 659 A~~~~~~~-~~~p~~~~~~~-l~~~~~----------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~ 724 (788)
|+..+-++ ...||.+..+- ++.++. ++-..-++..++++..++.-. ...+.+++|.+|-..|-..-
T Consensus 759 Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~L 838 (895)
T KOG2076|consen 759 ALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHL 838 (895)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHH
Confidence 98877665 34455333222 222221 122346677777777665443 67899999999999999999
Q ss_pred HHHHHHHHHHCCCcc
Q 035503 725 VSQVRDIMKEKGLRK 739 (788)
Q Consensus 725 A~~~~~~~~~~~~~~ 739 (788)
|..+|+++++..++.
T Consensus 839 A~~YYekvL~~~p~~ 853 (895)
T KOG2076|consen 839 AVSYYEKVLEVSPKD 853 (895)
T ss_pred HHHHHHHHhCCCccc
Confidence 999999999876543
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=1.6e-12 Score=130.75 Aligned_cols=548 Identities=13% Similarity=0.079 Sum_probs=400.5
Q ss_pred CchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCC-hHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHH
Q 035503 94 DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA-LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172 (788)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (788)
..+.|..+....++. .|.++.+|..-...-....+ ..--++.++.+|. ++..|. +.....+.+.|.-++.+
T Consensus 330 p~d~aK~vvA~Avr~---~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~-sv~LWK----aAVelE~~~darilL~r 401 (913)
T KOG0495|consen 330 PPDVAKTVVANAVRF---LPTSVRLWLKAADLESDTKNKKRVLRKALEHIPR-SVRLWK----AAVELEEPEDARILLER 401 (913)
T ss_pred ChHHHHHHHHHHHHh---CCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCc-hHHHHH----HHHhccChHHHHHHHHH
Confidence 445566666666666 36666555444433321111 1112233333332 444454 33445667778888888
Q ss_pred HHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCC-------
Q 035503 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA------- 245 (788)
Q Consensus 173 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 245 (788)
..+- -|. -.-+.-++++..-++.|+.+++...+. ++.+..+|..-...--..|+.+...+++++-..
T Consensus 402 Avec--cp~---s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv 475 (913)
T KOG0495|consen 402 AVEC--CPQ---SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGV 475 (913)
T ss_pred HHHh--ccc---hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcce
Confidence 7763 222 123455667777888899998887654 588888888888888888999888888876521
Q ss_pred -CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHH
Q 035503 246 -RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP--TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322 (788)
Q Consensus 246 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 322 (788)
-+...|-.=...|-..|..-.+..+....+..|+.- -..||..-...|.+.+.++-++.+|...++.- +.+...|.
T Consensus 476 ~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWl 554 (913)
T KOG0495|consen 476 EINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWL 554 (913)
T ss_pred eecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHH
Confidence 144466666777778888888888888888777653 45688888889999999999999999888763 44556666
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHH
Q 035503 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402 (788)
Q Consensus 323 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 402 (788)
..+.+--..|..++-..+|++....-+ .....|-
T Consensus 555 ra~~~ek~hgt~Esl~Allqkav~~~p----------------------------------------------kae~lwl 588 (913)
T KOG0495|consen 555 RAAMFEKSHGTRESLEALLQKAVEQCP----------------------------------------------KAEILWL 588 (913)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCC----------------------------------------------cchhHHH
Confidence 666555555555555555555433211 2345566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCC
Q 035503 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482 (788)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 482 (788)
...+.+...|+...|..++.++.+.. +.+...+..-+.......+++.|..+|.+.... .|+...|.--+...--.+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 66777778888999999888888774 336677777888888899999999999888664 557777877777777888
Q ss_pred CchHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 035503 483 CGNEAILFFQEMLETGIKPSTT-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561 (788)
Q Consensus 483 ~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (788)
+.++|++++++.++ .-|+.. .|..+.+.+.+.++++.|...|..-.+.-| ..+..|..|...-.+.|.+-.|..++
T Consensus 666 ~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP-~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 666 NVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP-NSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred hHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC-CCchHHHHHHHHHHHhcchhhHHHHH
Confidence 99999999999887 356654 667777788889999999999888777666 67788999999999999999999999
Q ss_pred hhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC
Q 035503 562 DISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638 (788)
Q Consensus 562 ~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 638 (788)
++..- .+...|-..|..-.+.|+.+.|..++.+.++. ++.+...|..-|...-+-++-......+++. .-
T Consensus 743 drarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~ 815 (913)
T KOG0495|consen 743 DRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EH 815 (913)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cC
Confidence 86653 45578999999999999999999999988775 3445566666666566666655555555433 45
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 035503 639 SMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
|+.....++.++....++++|.+.|.+. ...||. .+|-.+...+..+|.-+.-..++.+...-+|.+...|.....-
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence 6777778999999999999999999988 455554 6898999999999999999999999999999998888776543
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.75 E-value=3.8e-14 Score=147.08 Aligned_cols=256 Identities=11% Similarity=0.025 Sum_probs=176.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCC
Q 035503 65 DLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144 (788)
Q Consensus 65 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 144 (788)
.++-.|...|+.|+..||..++..||..|+.+.|- +|..|.-.. .+....+++.++......++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks--Lpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS--LPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc--ccccchhHHHHHhcccccccccCCC-------C
Confidence 45677888899999999999999999999999888 888888777 8888889999999988888887665 7
Q ss_pred CCcccHHHHHHHHHcCCCchH---HHHHHHHHH----HCCCCCCcccHHHHHHHhcccC-Cch------HHHHHHHHHHH
Q 035503 145 KNVFSWAAIIGLNCRVGLSEK---ALIGFVEMQ----EDGVSPDNFVLPNVLKACGALG-WVG------FGRAVHGYVLK 210 (788)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~~~~~~~~~~~~ll~~~~~~~-~~~------~a~~~~~~~~~ 210 (788)
|...+|..|..+|.+.||... ..+.++... ..|+.....-+-..+++|-..- +.. --+.+++..++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999998654 222222221 1233322223333333332110 100 01223333344
Q ss_pred HcCCCchhhhhHH----HHHhHh-cCChHHHHHHHhcCCC-CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHH
Q 035503 211 VGFDGCVFVASSL----IDMYGK-CGDLEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284 (788)
Q Consensus 211 ~~~~~~~~~~~~l----i~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 284 (788)
.+..-.+..++.- ++-... ...+++-........+ +++.+|..++.+-..+|+.+.|..++.+|++.|++.+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 3311111111111 111111 1223444444444444 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 035503 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333 (788)
Q Consensus 285 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 333 (788)
-|..++-+ .++...+..+...|...|+.|+..|+...+..+.++|.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888766 78888899999999999999999999887777777555
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.7e-13 Score=132.36 Aligned_cols=436 Identities=14% Similarity=0.157 Sum_probs=333.7
Q ss_pred CchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc
Q 035503 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395 (788)
Q Consensus 316 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 395 (788)
.+...|......-..++++..|..+|++....|. .+..++...+++-.++..+..|..+++....
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~---------------r~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDY---------------RNITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc---------------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 3445555556666677888889999998877664 3445777788888889999999999988752
Q ss_pred --CC-hhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHH
Q 035503 396 --RD-VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472 (788)
Q Consensus 396 --~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 472 (788)
|- ...|.-.+..--..|++..|.++|++...- .|+...|++.++.-.+-+.++.|..+++...-. .|++.+|-
T Consensus 136 ~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wi 211 (677)
T KOG1915|consen 136 ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWI 211 (677)
T ss_pred hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHH
Confidence 22 235666666777789999999999998875 899999999999999999999999999998654 47899998
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH----HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 035503 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTT----TITCALSACTDVASLRNGRAIHGYLIRHDLCLP-TPIVTSLVDM 547 (788)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 547 (788)
.....-.+.|+...|..+|....+. -.|.. .+.+...--.....++.|..+++.++..-|... ..+|..+...
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~f 289 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAF 289 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 8888888999999999999988763 22332 233333333456788999999999998776433 4455555555
Q ss_pred HHHcCCHHHHHHHH--------hhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh-------HHHH
Q 035503 548 YAKCGNIHQAKRVF--------DISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI-------TFTN 609 (788)
Q Consensus 548 ~~~~g~~~~A~~~~--------~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ 609 (788)
--+-|+........ +...+ -|..+|--.+..-...|+.+...+.|++.+.. ++|-.. .|.-
T Consensus 290 EKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 290 EKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLW 368 (677)
T ss_pred HHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHH
Confidence 55556654443332 22223 34457777888888899999999999998875 566321 1211
Q ss_pred HHHH---hhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHH----HHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 035503 610 ILNA---CSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVV----NLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLS 680 (788)
Q Consensus 610 ll~~---~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~----~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 680 (788)
+=.+ -....+++.+.++|+..+ .+-|. .-+|..+- ....++.++..|.+++..+ +..|...++...+.
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l---~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACL---DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH---hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence 1112 235789999999999987 45565 44555433 3346889999999999877 67789999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEEcCCC
Q 035503 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760 (788)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (788)
.-.+.++++....+|++.++..|.+..+|...+.+-...|+++.|..+|..++++.....|...|- ....|.....
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~ 521 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEG 521 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----Hhhhhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999988788876663 5567888888
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 035503 761 SHPKTEEIYATLALLGMHVR 780 (788)
Q Consensus 761 ~~~~~~~~~~~l~~~~~~~~ 780 (788)
.+..+..+|.+|.+..++.|
T Consensus 522 E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 522 EFEKARALYERLLDRTQHVK 541 (677)
T ss_pred hHHHHHHHHHHHHHhcccch
Confidence 99999999999998777665
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=3.5e-14 Score=136.07 Aligned_cols=277 Identities=14% Similarity=0.093 Sum_probs=191.8
Q ss_pred HHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHH
Q 035503 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNT 403 (788)
Q Consensus 327 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 403 (788)
-|.++|+++.|++++.-...+|..+-+..... ...+..+.-..++..|...-+....- +......
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~n------------l~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANN------------LCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhh------------hHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence 46677778877777777766554332211100 01111111123455555555444322 3333333
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCC
Q 035503 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483 (788)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 483 (788)
-.......|++++|.+.+++.+...-.-....|| +.-.+-..|+.++|++.|-++... +..+......+...|-...+
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLED 573 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhC
Confidence 3334455789999999999988663222223333 333467789999999999887332 12267777778888989999
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhh
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (788)
..+|++++-+.... ++.|+..+..+...|-+.|+-.+|.+++-...+.-| .+..+...|+..|....-+++|+..|++
T Consensus 574 ~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp-~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 574 PAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP-CNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC-cchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999887764 556677888888999999999999998887777666 7788888899999999999999999985
Q ss_pred --CCCCChhhHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcH
Q 035503 564 --SPSKELPVYNAMISG-YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620 (788)
Q Consensus 564 --~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 620 (788)
+.+|+..-|..|+.. +.+.|++.+|.++|+....+ ++.|......|++.+...|..
T Consensus 652 aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 652 AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 456888889887654 55689999999999987665 566778888888878777743
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2.9e-12 Score=122.43 Aligned_cols=320 Identities=14% Similarity=0.120 Sum_probs=155.1
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHh--cccCCchHHH-HHHHHHHHHcCCCchhhhhHHH
Q 035503 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC--GALGWVGFGR-AVHGYVLKVGFDGCVFVASSLI 224 (788)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li 224 (788)
.+=|.|+. +...|...++.-+|+.|.+.|+......-..+++.- ..+.+...+. +.|-.|.+.| +.+..+
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~s----- 189 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSS----- 189 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccc-----
Confidence 34454444 345678888888899998888776665544444332 2333332221 2222222222 111111
Q ss_pred HHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHH
Q 035503 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304 (788)
Q Consensus 225 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 304 (788)
.+.|++.+ ++-+...+...+|..||.+.++--..+.|.+++++-.....+.+..+|+.+|.+.+-.. ..+
T Consensus 190 ---WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~ 259 (625)
T KOG4422|consen 190 ---WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKK 259 (625)
T ss_pred ---cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHH
Confidence 12233222 22233333444555555555555555555555555555555555555555555433221 245
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHH----HHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 035503 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV----VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380 (788)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~ 380 (788)
+...|....+.||..|+|+++.+..+.|+++.|.. ++.+|.+-++ .|....|..++..+++.
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGV--------------ePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGV--------------EPSLSSYHLIIKNFKRE 325 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC--------------CcchhhHHHHHHHhccc
Confidence 55555555555555555555555555555544432 3333333222 22222333333333332
Q ss_pred CChHH-HHHHHHhcc------------cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCc---hhHHHHHH
Q 035503 381 ERIDN-AKQVFNSII------------LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE----GISPN---IISWNSVI 440 (788)
Q Consensus 381 ~~~~~-A~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~---~~~~~~ll 440 (788)
++..+ +..++.++. ..|...|...+..|.+..+.+-|.++..-+... -+.|+ .+-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 22211 111111111 123344556666666666666666655544321 12222 22345555
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 035503 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498 (788)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (788)
...+.....+.....|+.|...-+-|+..+...++.+..-.|.++-.-+++.++...|
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 5666666666666666666555555666666666666666666666666666655544
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.8e-13 Score=131.67 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=167.9
Q ss_pred hhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHH
Q 035503 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEAL 589 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 589 (788)
+.-.|+.-.+..-++.++...+. +...|..++.+|....+.++-+..|+...+ .++.+|..-...+.-.+++++|+
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 34467777888888888887773 334477777888888888888888876544 45567777777777778888999
Q ss_pred HHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C
Q 035503 590 ALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P 667 (788)
Q Consensus 590 ~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 667 (788)
.=|++.++. .| +...|..+.-+.-+.++++++...|++.++ .++..++.|+..+..+..++++++|.+.|+.+ .
T Consensus 415 aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 415 ADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 989887774 44 456677777777788899999999999976 44455788888899999999999999999887 3
Q ss_pred CCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 668 CDPD---------AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 668 ~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.+|+ +.+...++..-.+ +|+..|+.++++++++||....+|..|+.+-..+|+.++|+++|++....
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4444 1222223322223 89999999999999999999999999999999999999999999987543
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.9e-12 Score=128.61 Aligned_cols=266 Identities=13% Similarity=0.047 Sum_probs=207.8
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 466 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
-++.......+-+...+++.+..++++...+. .++....+..-+.++...|+..+-..+-.++++..| ..+..|.+++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHH
Confidence 35555666667778888999999999988875 356666666666677888888887777778888777 6777888888
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHH
Q 035503 546 DMYAKCGNIHQAKRVFDISPSKEL---PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 622 (788)
-.|...|+..+|.+.|.+...-|. +.|-.++..|.-.|..++|+..|...-+. ++-....+..+.--|.+.+..+-
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 888888999999999987665443 68999999999999999999988876553 11122233344445888899999
Q ss_pred HHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 035503 623 GLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP--------CDP-DAHIIGSLLSTCVKSNETELAE 692 (788)
Q Consensus 623 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~A~ 692 (788)
|.++|..+. ++.|+ +-..+-++......+.+.+|..+|+... ..+ ...++++|+.+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999998776 66676 5566677777788889999988887761 111 3457888999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 693 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
..+++++.+.|.++.++..+|-+|...|+.+.|.+.|.+.+...+
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999888776543
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=4.5e-16 Score=154.81 Aligned_cols=256 Identities=16% Similarity=0.154 Sum_probs=110.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCCHHH-HHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 035503 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTT-ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552 (788)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (788)
+...+.+.|++++|++++++......+|+... +..+...+...++.+.|...++++...+. .++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 35555666666666666654433221233333 33334445556667777777777766655 355556666666 6778
Q ss_pred CHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHhhccCcHHHHHHHHHh
Q 035503 553 NIHQAKRVFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVG 629 (788)
Q Consensus 553 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 629 (788)
++++|.+++....+ ++...+..++..+...|+++++.++++++.... .+++...|..+...+.+.|+.++|++.|++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887765533 455667778888889999999999999876543 234666777777888999999999999999
Q ss_pred cHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 630 MFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 630 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
+++ ..|+ ......++..+...|+.+++.++++... .+.++..|..++.++...|+.++|...++++++.+|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 874 4565 6677789999999999999888877762 234556788999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
..+..+++++...|+.++|.++++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999987654
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.1e-12 Score=122.98 Aligned_cols=324 Identities=13% Similarity=0.074 Sum_probs=230.4
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhH---H
Q 035503 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW---T 472 (788)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~---~ 472 (788)
.|...+-.....+.+.|..+.|++.|...+.. .+-....|..|.... .+.+.+. .+.. |.+.| .+| -
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~----~l~~-~l~~~-~h~M~~~ 231 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILS----ILVV-GLPSD-MHWMKKF 231 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHH----HHHh-cCccc-chHHHHH
Confidence 35555555566677788888888888877654 233444444333222 2222222 1111 11111 111 1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHH
Q 035503 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC--LPTPIVTSLVDMYAK 550 (788)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 550 (788)
.+..++....+.++++.-.......|++-+...-+....+.....++++|+.+|+.+.+.+|- .+..+|..++-.--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 234556666678888888888888777666666666666677788999999999999998762 244455444432222
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHh
Q 035503 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD-SITFTNILNACSHAGLVNEGLELFVG 629 (788)
Q Consensus 551 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 629 (788)
+.++.---...-.+.+--+.|...+.+-|.-.++.++|+..|++.+..+ |. ...|+.+..-|....+...|++-|++
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2222211112222333344567777888888999999999999988854 54 45677777789999999999999999
Q ss_pred cHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 630 MFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 630 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
++ .+.| |-..|..|+.+|.-.+...-|+-+|+++ .. +.|...|.+|+..|.+.++.++|+++|.+++...-.+.
T Consensus 390 Av---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 390 AV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 87 5555 5788889999999999999999999998 33 45778999999999999999999999999999888889
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
.+++.|+++|.+.++.++|...+++-++
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999998766
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.9e-12 Score=125.21 Aligned_cols=367 Identities=12% Similarity=0.087 Sum_probs=254.8
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchh
Q 035503 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434 (788)
Q Consensus 355 li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 434 (788)
.+..+-..+..|....-...-.+.+.|....|+..|......-+..|.+.+....-.-+.+.+..+ .. |...|..
T Consensus 152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h 226 (559)
T KOG1155|consen 152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----VV-GLPSDMH 226 (559)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----Hh-cCcccch
Confidence 334444444556556666667777889999999999888765555565555544333333332222 11 2222211
Q ss_pred HH--HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 035503 435 SW--NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI--KPSTTTITCAL 510 (788)
Q Consensus 435 ~~--~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll 510 (788)
.+ --+..++-...+.+++..-.......|++.+...-+....+.....++++|+.+|+++.+... -.|..+|+.++
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence 11 223455666667888888888888888876666666666677788899999999999987631 11445666665
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCHHH
Q 035503 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL---PVYNAMISGYAMHGLAVE 587 (788)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 587 (788)
-.-....++. .+.+-+-.-..-.+.+...+++.|.-.++.++|...|++..+.|+ .+|+.|++-|...++...
T Consensus 307 Yv~~~~skLs----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 307 YVKNDKSKLS----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HHHhhhHHHH----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHH
Confidence 4432222211 111111111124455667788888888999999999987766443 578889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 588 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
|++-|++.++-+ +-|-..|-.|..+|.-.+.+.=|+-+|+++. .++|+ ...+.+|+++|.+.++.++|++.|..+
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999988854 3477889999999999999999999999886 55564 778889999999999999999999888
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 667 P--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ-------LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 667 ~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
- .+.+...+..|+..|-+.++.++|...|++-++ .+|....+..-|+.-+.+.+++++|..+-.....
T Consensus 459 i~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 459 ILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 3 233457788889999999999999999998887 3454455566688888999999999887765543
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5e-12 Score=125.66 Aligned_cols=489 Identities=13% Similarity=0.006 Sum_probs=306.5
Q ss_pred cCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhc--CCCCCcchHHHHHHHHHHCCChhHHHHHHH
Q 035503 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG--MIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272 (788)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 272 (788)
+..+..|.-+-+++...+ .|+.-.--+..++.-.|+++.|..+... +.+.|..+......++.+..++++|..++.
T Consensus 29 q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555555554443 3333334466667777777777666543 345577777777777778888888877776
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhH
Q 035503 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352 (788)
Q Consensus 273 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 352 (788)
.-. +.-+...+..--. ...-+.+.+..... .......+-.-...|....+.++|...|.+..-.|+..+
T Consensus 107 ~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~~------~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~ 175 (611)
T KOG1173|consen 107 RGH---VETNPFSYYEKDA--ANTLELNSAGEDLM------INLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF 175 (611)
T ss_pred ccc---hhhcchhhcchhh--hceeccCccccccc------ccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH
Confidence 321 1111111100000 00000000000000 000001111111234455566777777777665555443
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc-----cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 035503 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII-----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427 (788)
Q Consensus 353 ~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 427 (788)
..+..-.. ...- ...+-..+|+... ..++.....+.....-...-++....-.+..-.
T Consensus 176 Ea~~~lvs---------------~~ml--t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~ 238 (611)
T KOG1173|consen 176 EAFEKLVS---------------AHML--TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLI 238 (611)
T ss_pred HHHHHHHH---------------HHhc--chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhh
Confidence 33221111 0000 0112222232211 112222222221111111111111111111122
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHH
Q 035503 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507 (788)
Q Consensus 428 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 507 (788)
+..-+......-..-+...+++.+..++++.+.+. .+++...+..-|.++...|+..+-..+=.+|.+. .+-.+.+|.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 34556666677777788999999999999999766 3557777777788999999999988888888875 355567999
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC
Q 035503 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGL 584 (788)
Q Consensus 508 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 584 (788)
++..-|...|+..+|++++.+....++ .-...|..++..|+-.|..|.|...+....+ .....+--+.--|.+.++
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc
Confidence 998888899999999999999999887 5566889999999999999999998864433 111123334556888999
Q ss_pred HHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc-CCCC----CcchHHHHHHHHhhcCChHH
Q 035503 585 AVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDH-QVKP----SMEHFGCVVNLLSRCGNLDE 658 (788)
Q Consensus 585 ~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~ 658 (788)
.+.|.+.|.+... +.| |+...+-+.-...+.+.+.+|..+|+..+..- .+.+ -.++++.|+.+|.+.+++++
T Consensus 396 ~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 396 LKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999766 455 56666666666777899999999999876311 1111 23457799999999999999
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 659 ALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 659 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
|+..+++. ..+.+..++.+++..|...|+++.|+..|.+++.++|++..+-..|..+...
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999998 3455777899999999999999999999999999999987777777766544
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.2e-10 Score=111.26 Aligned_cols=425 Identities=13% Similarity=0.082 Sum_probs=202.0
Q ss_pred HHHhHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCcCCh
Q 035503 224 IDMYGKCGDLEEARKVFDGMIA---RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV-SVTSILSASANLDAL 299 (788)
Q Consensus 224 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~ 299 (788)
..--...+++..|..+|++... +++..|-.-+..=.++.....|..+++..+.. -|.+. .|.--+-.--..|++
T Consensus 80 aqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi 157 (677)
T KOG1915|consen 80 AQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNI 157 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhccc
Confidence 3333445666777777777643 35556666666667777777777777777653 23222 112222222335677
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhh
Q 035503 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379 (788)
Q Consensus 300 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~ 379 (788)
..|+++|+.-..- +|+...|.+.++.-.+.+.++.|..++++.+-- .|+...+...+..-.+
T Consensus 158 ~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~----------------HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 158 AGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV----------------HPKVSNWIKYARFEEK 219 (677)
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee----------------cccHHHHHHHHHHHHh
Confidence 7777777665543 567777777777777777777777777765321 1222334444444555
Q ss_pred cCChHHHHHHHHhcccC------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHH
Q 035503 380 CERIDNAKQVFNSIILR------DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN--IISWNSVILGFLRNGQMNE 451 (788)
Q Consensus 380 ~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~ 451 (788)
+|++..|..+|+..... +...+.+....-.++..++.|.-+|+-++.. ++.+ ...|..+...--+-|+...
T Consensus 220 ~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhh
Confidence 56666666666554321 2233444444445556666666666666655 1211 2333333333333344332
Q ss_pred HHHH--------HHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH--HHHH--------HHHHh
Q 035503 452 AKDM--------FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT--TITC--------ALSAC 513 (788)
Q Consensus 452 A~~~--------~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~--------ll~~~ 513 (788)
..+. ++.+.+. -+-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.. .+-.-
T Consensus 299 IEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeE 376 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEE 376 (677)
T ss_pred hHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1122221 1224445555555555555666666666655543 344211 0110 01111
Q ss_pred hccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 035503 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 593 (788)
....+.+.+.++++..++.-| ....++.. .|-.......++.+...|.+++.
T Consensus 377 le~ed~ertr~vyq~~l~lIP-HkkFtFaK---------------------------iWlmyA~feIRq~~l~~ARkiLG 428 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIP-HKKFTFAK---------------------------IWLMYAQFEIRQLNLTGARKILG 428 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcC-cccchHHH---------------------------HHHHHHHHHHHHcccHHHHHHHH
Confidence 223445555555555544322 11111111 12222223334444444544444
Q ss_pred HHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-
Q 035503 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMPCDPD- 671 (788)
Q Consensus 594 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~- 671 (788)
..+ |..|...+|...|..-.+.+.+|....+|++.+ ...|. ..++...+..=...|+.+.|..+|+-+-..|.
T Consensus 429 ~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l 503 (677)
T KOG1915|consen 429 NAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL 503 (677)
T ss_pred HHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc
Confidence 422 334444444444444444455555555555443 22232 33444444444445555555555544422221
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 672 ---AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 672 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
...|.+.+.--...|.++.|..+|+++++..+.
T Consensus 504 dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 504 DMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 123444444444455555555555555554443
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.5e-12 Score=135.50 Aligned_cols=277 Identities=9% Similarity=0.033 Sum_probs=167.8
Q ss_pred cCCHHHHHHHHHHhhhCCCCCChhhHHHH-HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHH--HHHHHhhccCchHHH
Q 035503 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTL-ISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT--CALSACTDVASLRNG 522 (788)
Q Consensus 446 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a 522 (788)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|.+++.++.+ ..|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 456666655555443321 112222222 2333556666666666666654 234432222 223445556666666
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh---h--------hHHHHHHHHHhCCCHHHHHHH
Q 035503 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL---P--------VYNAMISGYAMHGLAVEALAL 591 (788)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~--------~~~~l~~~~~~~g~~~~A~~~ 591 (788)
...++.+.+..| .++.+...+...|.+.|++++|.+++..+.+... . +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 666666666665 4555666666666666666666666655543111 1 222333333334445555555
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC
Q 035503 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP 670 (788)
Q Consensus 592 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 670 (788)
++.+-.. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++......++.+++++.+++. ...|
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 5554332 234566677777788888888888888877763 34444322 222223458888888888776 3334
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 671 -DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 671 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
|+.....++..|...+++++|+..++++++..|+ ...+..++.++.+.|+.++|.+++++-+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4456778888899999999999999999999998 45567889999999999999999887654
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=3.3e-13 Score=136.89 Aligned_cols=281 Identities=12% Similarity=0.064 Sum_probs=171.2
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCChhhHHHHHHHHHhCCCchHHHHH
Q 035503 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG--VQPNLITWTTLISGLTQNSCGNEAILF 490 (788)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 490 (788)
+..+|+..|.....+ +.-+......+..+|...+++++|.++|+.+.+.. ..-+...|.+.+-.+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 345666666663333 22233444555666666666666666666664331 01133444444332221 111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh-
Q 035503 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL- 569 (788)
Q Consensus 491 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 569 (788)
+ -+.++..++ ..+..|.+++++|.-+++.+.|++.|++...-|+
T Consensus 409 L----------------------------------aq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 409 L----------------------------------AQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred H----------------------------------HHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence 1 122222333 4455555566666666666666666655554333
Q ss_pred --hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc-chHHH
Q 035503 570 --PVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM-EHFGC 645 (788)
Q Consensus 570 --~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~ 645 (788)
.+|+-+..-+.....+|.|...|+..+. +.| +...|..+...|.+.++++.|.-.|+++. .+.|.. ....+
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~ 528 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCH 528 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhh
Confidence 4555555666666666677777766443 333 23455556666777777777777777665 566653 34446
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcH
Q 035503 646 VVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723 (788)
Q Consensus 646 l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 723 (788)
++..+.+.|+.++|+.+++++ .. +.|+..-..-+..+...+++++|...+|++.++-|++..++..++.+|.+.|+.+
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 777777777888888877777 22 2344445555666777888889999999998999998899999999999999999
Q ss_pred HHHHHHHHHHHCCCc
Q 035503 724 EVSQVRDIMKEKGLR 738 (788)
Q Consensus 724 ~A~~~~~~~~~~~~~ 738 (788)
.|+.-|.-+.+..++
T Consensus 609 ~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 609 LALLHFSWALDLDPK 623 (638)
T ss_pred HHHHhhHHHhcCCCc
Confidence 998888888776654
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3e-13 Score=137.21 Aligned_cols=245 Identities=14% Similarity=0.114 Sum_probs=182.1
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHHcCCHH-HHHHH
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC--LPTPIVTSLVDMYAKCGNIH-QAKRV 560 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~-~A~~~ 560 (788)
..+|+..|...... +.-+......+..+|...+++++++.+|+.+.+..+. .+..+|...+.-+-+.=... -|..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 35566666663332 2333344455566666666666666666666665442 34445544443332211111 11111
Q ss_pred HhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC
Q 035503 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639 (788)
Q Consensus 561 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 639 (788)
. ...+..+.+|-+++.+|.-+++++.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.++ + .+
T Consensus 414 i-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~--~~ 485 (638)
T KOG1126|consen 414 I-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G--VD 485 (638)
T ss_pred H-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--CC
Confidence 1 22234668999999999999999999999999887 456 67888888888999999999999998776 4 45
Q ss_pred cchHH---HHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 640 MEHFG---CVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 640 ~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
+++|+ .|+..|.++++++.|+-.|+++ ...|.. +....++..+.+.|+.|+|+.++++++.++|.++-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 55555 7888999999999999999998 555654 556677788999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHCCC
Q 035503 715 AYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 715 ~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
++...+++++|+..++++.+.-+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCc
Confidence 99999999999999999987654
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=3.6e-11 Score=125.44 Aligned_cols=519 Identities=14% Similarity=0.098 Sum_probs=289.5
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCC
Q 035503 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247 (788)
Q Consensus 168 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 247 (788)
.++-.|...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-..++.+..+++.++....+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999998 9999988888888999999999999999988876 678
Q ss_pred cchHHHHHHHHHHCCChhHHHHHHHH-HHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHH-hCCCCchhHHHHHH
Q 035503 248 VVAWNSMIVGYVQNGLNEEAIRVFYE-MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI-NGMELDNVLGSSII 325 (788)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~ 325 (788)
..+|..|..+|...|+... ++..++ |. .+...++..|.......++..+.- .+.-||.. ..+
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~i 146 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAI 146 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHH
Confidence 8899999999999999765 222222 21 122223333333333333222111 11222222 333
Q ss_pred HHHHhcCChhHHHHHHHhcCCCCch-hHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc-cCChhHHHH
Q 035503 326 NFYSKVGLLEDAEVVFSRMVERDIV-TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII-LRDVVLWNT 403 (788)
Q Consensus 326 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~ 403 (788)
....-.|.++.+++++..++..... +... +.+....+ ...+++-..+..... .+++.+|..
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~-------------ntpvekLl~~cksl~e~~~s~~l~a 209 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD-------------NTPVEKLLNMCKSLVEAPTSETLHA 209 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC-------------CchHHHHHHHHHHhhcCCChHHHHH
Confidence 4445556666666666655432110 0000 11111111 112222222222222 367777777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCC
Q 035503 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483 (788)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 483 (788)
+++.-...|+.+.|..++.+|.+.|++.+..-|-.|+-+ .++..-++.++..|.+.|+.|+..|+.-.+..+..+|.
T Consensus 210 ~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 210 VLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777788888888888888887777776666555544 67777777777777777888887777766666655443
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-----chHH-----HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVA-----SLRN-----GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 553 (788)
...+. .| .+....+.+-...-...| .++. ....+.+..-.|......+|..... ...+|+
T Consensus 287 t~~~~--------e~-sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk 356 (1088)
T KOG4318|consen 287 TKYGE--------EG-SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGK 356 (1088)
T ss_pred hhhcc--------cc-cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCC
Confidence 21111 11 111111111111111111 1100 1111111111233222222222222 222455
Q ss_pred HHHHHHHHhhCCC-------CChhhHHHHHHHHHh----------------------CCCHHHHHHHHHHH---------
Q 035503 554 IHQAKRVFDISPS-------KELPVYNAMISGYAM----------------------HGLAVEALALFKNL--------- 595 (788)
Q Consensus 554 ~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~----------------------~g~~~~A~~~~~~m--------- 595 (788)
-++..++...+.. .++..+..++.-|.+ .....+..++....
T Consensus 357 ~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~l 436 (1088)
T KOG4318|consen 357 GEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQL 436 (1088)
T ss_pred CchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHH
Confidence 5555555443332 122222222222211 11111111111111
Q ss_pred ---HH----cCCCC-------CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHH
Q 035503 596 ---QQ----KGIDP-------DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 596 ---~~----~~~~p-------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
.. ....| =...-+.++..|+..-+..+++..-+.. ++.-+ ...|..|++.+....+.++|..
T Consensus 437 v~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky-e~~lf---~g~ya~Li~l~~~hdkle~Al~ 512 (1088)
T KOG4318|consen 437 VGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY-EDLLF---AGLYALLIKLMDLHDKLEYALS 512 (1088)
T ss_pred hhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---hhHHHHHhhhHHHHHHHHHHHh
Confidence 00 00111 0112233344444444444444322222 22122 2577889999999999999999
Q ss_pred HHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 662 VILTMPCD-----PDAHIIGSLLSTCVKSNETELAEYISEHLLQL---EPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 662 ~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
+.++.... -|..-+..+.+.+.+.+....+..+++...+. .|.-....+.+.+.....|+.+.-.++.+-+.
T Consensus 513 ~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 513 FVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred chhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 99988432 33445667778888888888888888877663 34445567777777888999999999999888
Q ss_pred HCCCccCCceeE
Q 035503 734 EKGLRKNPGCSW 745 (788)
Q Consensus 734 ~~~~~~~~~~~~ 745 (788)
..|+.. .|..|
T Consensus 593 slgl~e-tgPl~ 603 (1088)
T KOG4318|consen 593 SLGLSE-TGPLW 603 (1088)
T ss_pred Hhhhhh-cccce
Confidence 888755 34444
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=3.4e-12 Score=132.85 Aligned_cols=285 Identities=11% Similarity=-0.008 Sum_probs=174.5
Q ss_pred cCChHHHHHHHHhcccC--Ch-hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHH--HHHHHHHhcCCHHHHHH
Q 035503 380 CERIDNAKQVFNSIILR--DV-VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN--SVILGFLRNGQMNEAKD 454 (788)
Q Consensus 380 ~~~~~~A~~~~~~~~~~--~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~A~~ 454 (788)
.|+++.|.+.+...... ++ ..|........+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555544322 11 22222233335555566666666555543 33332221 22344555555666655
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCC
Q 035503 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534 (788)
Q Consensus 455 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 534 (788)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.+..+ ......+-
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~------------------------ 228 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLE------------------------ 228 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHH------------------------
Confidence 555554442 2234445555555555555555555555555543221 11111000
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 035503 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611 (788)
Q Consensus 535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 611 (788)
...+..++.......+.+...++++.+++ .++.....+...+...|+.++|.+.+++.... .|+.... ++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 01222233333344455666666666654 46667888889999999999999999888774 4444322 23
Q ss_pred HHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH
Q 035503 612 NACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETE 689 (788)
Q Consensus 612 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~ 689 (788)
.+....++.+++++..+...+. .|+ +..+..++..+.+.|++++|.+.|+++ ...|+...+..+..++...|+.+
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 3445568999999999988753 354 556679999999999999999999988 56789888889999999999999
Q ss_pred HHHHHHHHHHhcC
Q 035503 690 LAEYISEHLLQLE 702 (788)
Q Consensus 690 ~A~~~~~~~~~~~ 702 (788)
+|..+|++.+.+.
T Consensus 379 ~A~~~~~~~l~~~ 391 (398)
T PRK10747 379 EAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998754
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.57 E-value=1.5e-09 Score=109.74 Aligned_cols=537 Identities=13% Similarity=0.179 Sum_probs=313.0
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHH-CCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHH
Q 035503 148 FSWAAIIGLNCRVGLSEKALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226 (788)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 226 (788)
..|-.-+..+..+|+.-.....|..... ..+......|...+.-....+-++.+..+++..++.. +....--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 3566666777777777777777776543 2334445566777776667777777777777766543 3334556666
Q ss_pred hHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChh---HHH
Q 035503 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD---EGK 303 (788)
Q Consensus 227 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~ 303 (788)
+++.+++++|.+.+..+...+... .+.| +.+...|..+.+..++.-+.- ...
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~--------sk~g-----------------kSn~qlw~elcdlis~~p~~~~slnvd 233 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFV--------SKKG-----------------KSNHQLWLELCDLISQNPDKVQSLNVD 233 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhh--------hhcc-----------------cchhhHHHHHHHHHHhCcchhcccCHH
Confidence 677777777777776664433210 1111 111222222222222211111 111
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCC--CchhHHHHHHHHHHcCCCchhHHHHHHHHH-hhc
Q 035503 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER--DIVTWNLLIASYVQSGQSDVVVASSIVDMY-AKC 380 (788)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~~~~~~l~~~~-~~~ 380 (788)
.+++..+..-...--..|+.|.+.|++.|.+++|..+|++..+. .+..++.+...|.+-. .......+.+- ...
T Consensus 234 aiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FE---E~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 234 AIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFE---ESCVAAKMELADEES 310 (835)
T ss_pred HHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHH---HHHHHHHHhhhhhcc
Confidence 12222211111111346788888888888888888888776543 2223444444444322 11112222210 011
Q ss_pred ------CChHHHHHHHHhcccC---------------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc------h
Q 035503 381 ------ERIDNAKQVFNSIILR---------------DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------I 433 (788)
Q Consensus 381 ------~~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~------~ 433 (788)
-+++-.+..|+.+... ++..|..-.. ...|+..+-...+.++... +.|. .
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPG 387 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChh
Confidence 1233344444444321 3333433322 3457788888889888875 3332 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC---------
Q 035503 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN---LITWTTLISGLTQNSCGNEAILFFQEMLETGIKP--------- 501 (788)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--------- 501 (788)
..|..+...|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|+.+++......-.|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3577788889999999999999999866533221 3456666666678889999999988876421111
Q ss_pred --------CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC----CCh
Q 035503 502 --------STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS----KEL 569 (788)
Q Consensus 502 --------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~ 569 (788)
+...|...++.-...|-++....+++.++...+ .++.+....+..+....-++++.++|++-.. |++
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 223455666666678899999999999999988 6777777777788888889999999997654 444
Q ss_pred -hhHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH--hhccCcHHHHHHHHHhcHhhcCCCCC--cc
Q 035503 570 -PVYNAMISGYAM---HGLAVEALALFKNLQQKGIDPDSITFTNILNA--CSHAGLVNEGLELFVGMFSDHQVKPS--ME 641 (788)
Q Consensus 570 -~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~--~~ 641 (788)
..|+..+.-+.+ .-..+.|..+|++.++ |.+|...-+..|+.+ -..-|....|+.+|+++.. ++++. ..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~ 623 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHH
Confidence 367765554443 3467899999999998 666765544444443 2345888899999998754 44443 23
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC-CCchHHHHHHH
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHI---IGSLLSTCVKSNETELAEYISEHLLQL-EPD-NPGNYVALSNA 715 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~ 715 (788)
.|+..+.--...=-+..-.++|+++ ..-|+..+ .......-.+.|..+.|+.+|...-++ +|. ++..|...-..
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~F 703 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEF 703 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHH
Confidence 4443222111110111122233333 11244332 222334445678888888888887775 454 56677777777
Q ss_pred HHhCCCcH
Q 035503 716 YAASGRWN 723 (788)
Q Consensus 716 ~~~~g~~~ 723 (788)
-.+.|+-+
T Consensus 704 EvrHGned 711 (835)
T KOG2047|consen 704 EVRHGNED 711 (835)
T ss_pred HHhcCCHH
Confidence 77788743
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=2.3e-11 Score=127.57 Aligned_cols=283 Identities=12% Similarity=0.004 Sum_probs=134.2
Q ss_pred HcCChhHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh--hhHHHHHHHHHhCCCchH
Q 035503 410 DLGRSGEASRLFYQMQLEGISPNII-SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL--ITWTTLISGLTQNSCGNE 486 (788)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~ 486 (788)
..|+++.|.+.+.+..+. .|+.. .+.....++.+.|+++.|...+.+..+.. |+. ...-.....+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 346666666666555443 23322 22233344555566666666666654331 222 122223555555666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHH-HHHHHH---HH----cCCHHHHH
Q 035503 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT-SLVDMY---AK----CGNIHQAK 558 (788)
Q Consensus 487 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~----~g~~~~A~ 558 (788)
|...++.+.+.. +-+...+..+...+...|+++.+...+..+.+.+.. +...+. .-..++ .. ....+...
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 666666666532 223344555555555666666666666665555442 222111 111111 11 11122223
Q ss_pred HHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC
Q 035503 559 RVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635 (788)
Q Consensus 559 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 635 (788)
+.++..+. .++..+..++..+...|+.++|.+.+++..+.. ||.....
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~--------------------------- 300 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAIS--------------------------- 300 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccch---------------------------
Confidence 33333332 244444555555555555555555555554432 2221100
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCchH
Q 035503 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD-A--HIIGSLLSTCVKSNETELAEYISE--HLLQLEPDNPGNY 709 (788)
Q Consensus 636 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~ 709 (788)
............++.+++++.+++. ...|+ + ....++++.|.+.|++++|++.++ .+++..|++. .+
T Consensus 301 ------~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~ 373 (409)
T TIGR00540 301 ------LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DL 373 (409)
T ss_pred ------hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HH
Confidence 0000111111223444444444443 11222 2 445566666777777777777777 4555666633 35
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
..++.++.+.|+.++|.+++++.+.
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5777777777777777777776543
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=5.4e-11 Score=116.08 Aligned_cols=220 Identities=10% Similarity=0.026 Sum_probs=176.4
Q ss_pred HHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHH
Q 035503 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557 (788)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (788)
+.-.|+.-.|.+-|+..++....++ ..|..+...|....+.++..+.|..+...++ .++.+|..-++++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHH
Confidence 4456888999999999998543222 2277777889999999999999999999999 7888999999999999999999
Q ss_pred HHHHhhCCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc
Q 035503 558 KRVFDISPSKEL---PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634 (788)
Q Consensus 558 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 634 (788)
..-|++...-++ ..|-.+.-+..+.++++++...|++.+.+ ++.-+..|+.....+...++++.|.+.|+.++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai--- 489 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI--- 489 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---
Confidence 999998776444 56667777778899999999999998876 44456788888889999999999999999887
Q ss_pred CCCCC-------cchH--HHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 035503 635 QVKPS-------MEHF--GCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEP 703 (788)
Q Consensus 635 ~~~p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 703 (788)
.+.|+ +..+ ..++..-. .+++..|..+++++ ..+|.. ..+..++..-.++|+.++|+++|++...+-.
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45554 1111 12222223 38999999999998 566665 4688899999999999999999999988755
Q ss_pred C
Q 035503 704 D 704 (788)
Q Consensus 704 ~ 704 (788)
.
T Consensus 569 t 569 (606)
T KOG0547|consen 569 T 569 (606)
T ss_pred h
Confidence 5
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=9.1e-12 Score=130.51 Aligned_cols=254 Identities=13% Similarity=0.083 Sum_probs=153.3
Q ss_pred CCCchHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 035503 481 NSCGNEAILFFQEMLETGIKPST-TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 559 (788)
.|+++.|.+.+.+..+. .|++ ..+.....+....|+.+.+...+..+.+..+.+...+....+..+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444432 2322 12222333444455555555555555444432222333334566666666666666
Q ss_pred HHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHH-HHHH---HhhccCcHHHHHHHHHhcHh
Q 035503 560 VFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT-NILN---ACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 560 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~---~~~~~g~~~~A~~~~~~~~~ 632 (788)
.++.+.+ .+...+..+...+...|++++|.+++.++.+.+.. +...+. .-.. .....+..+++.+.+..+..
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6665543 23445666677777777777777777777776533 222221 1111 11233333333444544443
Q ss_pred hc--CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 633 DH--QVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHI---IGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 633 ~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
.. ..+.+...+..++..+...|+.++|.+.+++. ...||... ...........++.+.+++.+++.++..|+++
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 21 11136778888999999999999999999888 33455432 12222223445888999999999999999999
Q ss_pred --chHHHHHHHHHhCCCcHHHHHHHHH--HHHCCC
Q 035503 707 --GNYVALSNAYAASGRWNEVSQVRDI--MKEKGL 737 (788)
Q Consensus 707 --~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~ 737 (788)
.....+++++.+.|+|++|.++|++ ..+..+
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p 368 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL 368 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence 8999999999999999999999995 544443
No 53
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.53 E-value=1.4e-10 Score=119.81 Aligned_cols=367 Identities=14% Similarity=0.131 Sum_probs=223.6
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchh-HHHHHHH
Q 035503 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII-SWNSVIL 441 (788)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~ 441 (788)
++.+|..+.-....+|+++.+.+.|++...- ....|+.+...+...|....|..+++.-......|+.. .+...-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 4445556666666667777777777665432 33456677777777777777777776654432223322 2222223
Q ss_pred HHH-hcCCHHHHHHHHHHhhh--CCC--CCChhhHHHHHHHHHhC-----------CCchHHHHHHHHHHhCCCCCCHHH
Q 035503 442 GFL-RNGQMNEAKDMFLQMQS--LGV--QPNLITWTTLISGLTQN-----------SCGNEAILFFQEMLETGIKPSTTT 505 (788)
Q Consensus 442 ~~~-~~g~~~~A~~~~~~~~~--~g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~ 505 (788)
.|. +.+.+++++.+-.++.+ .+. ......|..+.-+|... ....++++.+++..+.+ +-|+..
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~ 480 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLV 480 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchH
Confidence 333 34556666665555533 111 11223343343333211 12235666666666543 223334
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC---------------
Q 035503 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KE--------------- 568 (788)
Q Consensus 506 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--------------- 568 (788)
...+.--|...++++.|.+..+++++.+...+...|..|+-.+...+++.+|+.+.+.... ++
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 4444444666677777777777777776667777777777777777777777777653322 00
Q ss_pred --h----hhHHHHHHHHH-----------------------hCCCHHHHHHHHHHHH--------HcC---------CC-
Q 035503 569 --L----PVYNAMISGYA-----------------------MHGLAVEALALFKNLQ--------QKG---------ID- 601 (788)
Q Consensus 569 --~----~~~~~l~~~~~-----------------------~~g~~~~A~~~~~~m~--------~~~---------~~- 601 (788)
. .+...++.... ..++..+|.+..+++. ..| +.
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 0 01111111111 1112222222222211 111 11
Q ss_pred -CCH------hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH
Q 035503 602 -PDS------ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA 672 (788)
Q Consensus 602 -p~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 672 (788)
|+. ..|......+...+..++|...+.++. ++.|- ...|...+..+...|..+||.+.|..+ ..+|+.
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 121 123334445778888899988888775 44454 667777888899999999999988777 566765
Q ss_pred -HHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 673 -HIIGSLLSTCVKSNETELAEY--ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 673 -~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+..+++..+.+.|+...|.. ++..+++++|.++.+|+.||.++.+.|+.++|.+.|+...+..
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 578889999999999888888 9999999999999999999999999999999999999987765
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.8e-11 Score=113.18 Aligned_cols=311 Identities=14% Similarity=0.109 Sum_probs=192.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCC--hhhHHHHHHHHHhCCCchHH
Q 035503 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG-VQPN--LITWTTLISGLTQNSCGNEA 487 (788)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A 487 (788)
.++.++|.++|-+|.+.. +.+..+-.+|.+.|-+.|..|.|+++.+.+.++. .+.+ ......|..=|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467778888888777642 2334455566777777777787877777775541 1111 12223344556666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCC
Q 035503 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567 (788)
Q Consensus 488 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 567 (788)
..+|..+.+.+ .--......++..|-...+|++|+.+-.++.+.+..+... .+++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAq--------------------- 181 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQ--------------------- 181 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHH---------------------
Confidence 77777666532 1123344555555555556666655555555554422111 1111
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC--cchHH
Q 035503 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS--MEHFG 644 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~ 644 (788)
.|.-|...+....+.+.|..++++..+.+ |+. ..-..+.+.....|+++.|++.++.+.+. .|+ +++..
T Consensus 182 ---fyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~ 253 (389)
T COG2956 182 ---FYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLE 253 (389)
T ss_pred ---HHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHH
Confidence 23334455556677777888888776653 433 33334555677788888888888877643 243 55666
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH---hCC
Q 035503 645 CVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA---ASG 720 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g 720 (788)
.|..+|...|+.++.+.++.++ ...+.......+...-....-.+.|...+.+-+...|+ ...+..|..... ..|
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhcccccc
Confidence 7788888888888888887776 34455555555665555555567777777777788888 445555555443 356
Q ss_pred CcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEE
Q 035503 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756 (788)
Q Consensus 721 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (788)
++.+...+++.|....++..|.+.....+-..+.|.
T Consensus 333 ~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 333 RAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred chhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 788889999999998888888776666655555543
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.8e-13 Score=136.16 Aligned_cols=255 Identities=12% Similarity=0.115 Sum_probs=100.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC-CCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 035503 438 SVILGFLRNGQMNEAKDMFLQMQSLG-VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516 (788)
Q Consensus 438 ~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (788)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|...++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 44666677777777777775543332 233455555566666677777777777777776432 233444444444 567
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCCHHHHHHH
Q 035503 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-----SKELPVYNAMISGYAMHGLAVEALAL 591 (788)
Q Consensus 517 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 591 (788)
+++++|..+.....+.. +++..+..++..+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776665543 344556667777888888888888876532 24566788888889999999999999
Q ss_pred HHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--C
Q 035503 592 FKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP--C 668 (788)
Q Consensus 592 ~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 668 (788)
+++.++. .| |......++..+...|+.+++.++++...+.. +.++..+..++.+|...|+.++|+.++++.. .
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9998886 45 46677788888899999999888888876542 4556667788999999999999999998882 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
+.|+.....++.++...|+.++|..+.+++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 44677788888999999999999999888765
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.8e-09 Score=103.29 Aligned_cols=296 Identities=13% Similarity=0.069 Sum_probs=220.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhhHHHHHHHHHhCCC
Q 035503 406 AAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN-LITWTTLISGLTQNSC 483 (788)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~ 483 (788)
.+++..++...+...+-.+... -++-|......+...+...|+.++|+..|++.... .|+ ..........+.+.|+
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccC
Confidence 3445556666666655554443 34566777888999999999999999999998665 111 2222233445678888
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhh
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (788)
.++-..+...+.... .-+...|..-+......++++.|..+-++.++.++ .+...+..-+.++...|+.++|.-.|+.
T Consensus 282 ~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred HhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHH
Confidence 988888888877531 23333444444455667889999999999998887 6777777788899999999999999986
Q ss_pred CCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH-HHh-hccCcHHHHHHHHHhcHhhcCCCC
Q 035503 564 SPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL-NAC-SHAGLVNEGLELFVGMFSDHQVKP 638 (788)
Q Consensus 564 ~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~g~~~~A~~~~~~~~~~~~~~p 638 (788)
... -+..+|..|+.+|...|++.+|..+-+..... +..+..+...+. ..| ...-.-++|.+++++.+ .+.|
T Consensus 360 Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P 435 (564)
T KOG1174|consen 360 AQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINP 435 (564)
T ss_pred HHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCC
Confidence 543 46679999999999999999998887775543 344566665553 233 33344578888888765 6778
Q ss_pred C-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 639 S-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 639 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
+ ......++..+.+.|+.++++.++++. ..-||....+.|+......+.+++|...|..++.++|++..+.
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 7 566678889999999999999999887 4568888999999999999999999999999999999974443
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=1.8e-11 Score=119.08 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=163.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 612 (788)
.....+..++..|...|++++|...++.... .+...+..+...+...|++++|++.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456777888899999999999999986543 345677888899999999999999999988764 335566777788
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 690 (788)
.+...|++++|...++++............+..++..+...|++++|...+++. ...| +...+..++..+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999998753222223456778899999999999999999887 3333 45678888999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 691 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
|...++++++..|+++..+..++.++...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998988999999999999999999999998877653
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=2.6e-07 Score=94.00 Aligned_cols=615 Identities=14% Similarity=0.124 Sum_probs=367.1
Q ss_pred CccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH--------HHhccCCCchhHHHHHHHHHHhCCCCC
Q 035503 42 SLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELL--------QGCVYKRDMYTGQQIHARILKNGDFFA 113 (788)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--------~~~~~~~~~~~a~~~~~~~~~~~~~~~ 113 (788)
-++.+|-..|..-.. ...++-..+|++..+.= +-+-..|..-| ..|.....++....-|+..+.. +-
T Consensus 25 ~svk~W~RYIe~k~~-sp~k~~~~lYERal~~l-p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~---mH 99 (835)
T KOG2047|consen 25 FSVKCWLRYIEHKAG-SPDKQRNLLYERALKEL-PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVF---MH 99 (835)
T ss_pred hhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH---Hh
Confidence 345567666665444 23334555666655422 22223332222 1122222333344444443332 12
Q ss_pred CchhHhhHHHHHHhccCChHHHHHHhccCCC-----CCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 035503 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRV-----KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188 (788)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (788)
--+.+|-.-+....++|++..-+..|+..-. .-...|...+...-..|-++-++.+|++..+. .|. .-.--
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eey 175 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEY 175 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHH
Confidence 3345667777777889999999888876421 23456888888888899999999999998874 233 35666
Q ss_pred HHHhcccCCchHHHHHHHHHHHHc------CCCchhhhhHHHHHhHhcCChH---HHHHHHhcCCCC--C--cchHHHHH
Q 035503 189 LKACGALGWVGFGRAVHGYVLKVG------FDGCVFVASSLIDMYGKCGDLE---EARKVFDGMIAR--N--VVAWNSMI 255 (788)
Q Consensus 189 l~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~--~--~~~~~~li 255 (788)
|.-++..+++++|.+.+..++... .+.+...|+-+.+...+.-+.- ....+++.+..+ | ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 777888999999999888876432 2566777887777776654332 234455555443 2 35899999
Q ss_pred HHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChh
Q 035503 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335 (788)
Q Consensus 256 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 335 (788)
.-|.+.|.++.|.++|++.... .....-|..+.++|+.....-.+..+- .....+..+. ..-+++
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~ 320 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLE 320 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHH
Confidence 9999999999999999998765 345555666777766433222221111 0000111100 111334
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc---C------ChhHHHHHHH
Q 035503 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL---R------DVVLWNTLLA 406 (788)
Q Consensus 336 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~------~~~~~~~l~~ 406 (788)
-...-|+.+....+...|.. +++..+.+...+..-+.. ..|+..+-...+.+... | -...|..+.+
T Consensus 321 ~~~a~~e~lm~rr~~~lNsV---lLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSV---LLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHhccchHHHHH---HHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHH
Confidence 44555555554444333332 223333333333333332 23455555555554431 1 1234777888
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC----------C-------
Q 035503 407 AYADLGRSGEASRLFYQMQLEGISPN---IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ----------P------- 466 (788)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~----------~------- 466 (788)
.|-..|+.+.|..+|++......+.- ..+|......-.+..+++.|..+.+......-. |
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 88888888888888888776543322 334555555566677777777777765322111 1
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 035503 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP-TPIVTSLV 545 (788)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 545 (788)
+...|...++..-..|-++....+++++++..+ .++........-+..+.-++++.+++++-+..-..|. ..+|+..+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 234566667777777888888899999988653 3444444444455667778888888887666544333 34556555
Q ss_pred HHHHH---cCCHHHHHHHHhhCCCCChhh-----HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhh
Q 035503 546 DMYAK---CGNIHQAKRVFDISPSKELPV-----YNAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACS 615 (788)
Q Consensus 546 ~~~~~---~g~~~~A~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~ 615 (788)
.-+.+ .-+++.|..+|+...+.-++. |-.....--..|....|+++|++.-.. +++.. ..|+..|.--.
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence 54443 246889999998776633322 222233334578889999999996543 44432 45666665322
Q ss_pred ccCcHHHHHHHHHhcHhhcCCCCCcchH---HHHHHHHhhcCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCH
Q 035503 616 HAGLVNEGLELFVGMFSDHQVKPSMEHF---GCVVNLLSRCGNLDEALRVILTMP--CDP--DAHIIGSLLSTCVKSNET 688 (788)
Q Consensus 616 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~ 688 (788)
..=-+.....+|+++++. -|+...- ...+++=.+.|..+.|..++.-.. ++| +...|.+.-.--.++||-
T Consensus 634 e~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 222233556778887753 3553332 256677789999999999987763 333 456788888888999994
Q ss_pred HH
Q 035503 689 EL 690 (788)
Q Consensus 689 ~~ 690 (788)
+-
T Consensus 711 dT 712 (835)
T KOG2047|consen 711 DT 712 (835)
T ss_pred HH
Confidence 43
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=3.6e-09 Score=99.15 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=106.7
Q ss_pred CHHHHHHHHhhCCC-----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 553 NIHQAKRVFDISPS-----KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 553 ~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
.++-|.+.|+-.-. ..++.-.++..++.-..++++.+-+++....-- ..|......+..+.+..|.+.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 34555666654332 223345566666666777788887777766642 333333334667788888888888888
Q ss_pred HhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 628 VGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS-LLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 628 ~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
-++. ...+ -+..+|. .|+.+|.+.|+++-|.+++-++..+.+..+... ++..|.+.+.+=-|-+.|..+-.++|.
T Consensus 417 ~~is-~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~- 493 (557)
T KOG3785|consen 417 IRIS-GPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT- 493 (557)
T ss_pred hhhc-Chhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-
Confidence 7663 1122 2334444 777888888888888888877765555544443 445688888888888888888788887
Q ss_pred CchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 706 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|+.| .|+...-..+|+.+....
T Consensus 494 pEnW---------eGKRGACaG~f~~l~~~~ 515 (557)
T KOG3785|consen 494 PENW---------EGKRGACAGLFRQLANHK 515 (557)
T ss_pred cccc---------CCccchHHHHHHHHHcCC
Confidence 4433 344444455555554433
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.2e-09 Score=104.76 Aligned_cols=288 Identities=17% Similarity=0.139 Sum_probs=135.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHH
Q 035503 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490 (788)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 490 (788)
.|++..|+++..+..+.+-.| ...|..-..+.-..|+.+.+-.++.++.+..-.++...+-+........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555544443221 2233333344444555555555555554432233344444444445555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh
Q 035503 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570 (788)
Q Consensus 491 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 570 (788)
++++.+.+ +-..........+|.+.|++.....+...+.+.+.-.+...-..= ..
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le------------------------~~ 230 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE------------------------QQ 230 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH------------------------HH
Confidence 55555432 222334444444455555555555555554444432221111000 01
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
+|+.+++-....+..+.-...|++.-.+ .+.+...-..++.-+...|+.++|.++.++..+. +..|+ ...++ ..
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~ 304 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PR 304 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hh
Confidence 3444444333333333333344433222 1223333334444455555555555555554433 22222 11111 11
Q ss_pred hhcCChHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHH
Q 035503 651 SRCGNLDEALRVI----LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 651 ~~~g~~~~A~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 726 (788)
.+.++.+.=++.. ...+.. +..+.+|+..|.+++.+.+|...++.+++..|+ ...|..++.+|.+.|+..+|.
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHH
Confidence 2233333322222 222322 246667777777777777777777777777776 667777777777777777777
Q ss_pred HHHHHHH
Q 035503 727 QVRDIMK 733 (788)
Q Consensus 727 ~~~~~~~ 733 (788)
+.+++.+
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 7777665
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.9e-09 Score=101.95 Aligned_cols=364 Identities=13% Similarity=0.029 Sum_probs=246.3
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhcccCChhH-HHHHHHHHHHcC-ChhH--------------HHHHHHHHHHcC-
Q 035503 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL-WNTLLAAYADLG-RSGE--------------ASRLFYQMQLEG- 428 (788)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~g-~~~~--------------a~~~~~~m~~~~- 428 (788)
+.......+.+|...++-+.|...+...++.-... .|.++..+.+.| +..+ |++.+.-..+.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 44455667778888888888888888776442222 233333222222 1111 122222222222
Q ss_pred --------------CCCchhHHHHHHHHHH--hcCCHHHHHHHHHHhh-hCCCCCChhhHHHHHHHHHhCCCchHHHHHH
Q 035503 429 --------------ISPNIISWNSVILGFL--RNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFF 491 (788)
Q Consensus 429 --------------~~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 491 (788)
+.|+..+....+.++. ..++...|...+-.+. ..-++.|+.....+.+++...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 2333334444444443 3455555555555542 2335667888899999999999999999999
Q ss_pred HHHHhCCCCCCHHHH-HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---C
Q 035503 492 QEMLETGIKPSTTTI-TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---K 567 (788)
Q Consensus 492 ~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 567 (788)
++... +.|+..+- -...-.+...|+.+....+...+....- .....|..-+.......+++.|+.+-++..+ .
T Consensus 256 e~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r 332 (564)
T KOG1174|consen 256 SSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR 332 (564)
T ss_pred HHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc
Confidence 98876 44554322 2222234566777777777776665442 2233333344555567788888888876665 4
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHH
Q 035503 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 646 (788)
++..+-.-...+...|+..+|.-.|+..+.. .| +...|..|+.+|...|.+.+|.-.-+...+. ++.+..+...+
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~ 408 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLF 408 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhh
Confidence 4556666667888999999999999997764 44 6789999999999999999998887777653 33455555544
Q ss_pred H-HHH-hhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCc
Q 035503 647 V-NLL-SRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722 (788)
Q Consensus 647 ~-~~~-~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 722 (788)
+ ..+ -...--++|.+++++. ..+|+. ...+.+...|...|.++.++.++++.+...|| ...+..|++++...+.+
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEP 487 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhH
Confidence 3 222 2334457899999887 567774 57788889999999999999999999999999 78899999999999999
Q ss_pred HHHHHHHHHHHHCCC
Q 035503 723 NEVSQVRDIMKEKGL 737 (788)
Q Consensus 723 ~~A~~~~~~~~~~~~ 737 (788)
.+|.+.|...+...+
T Consensus 488 Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999998877665
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=1.6e-09 Score=103.88 Aligned_cols=196 Identities=12% Similarity=0.099 Sum_probs=133.1
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh
Q 035503 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI-------ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468 (788)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 468 (788)
.++........+|.+.|++.+...++..+.+.|.-.|. .+|+.++.-....+..+.-...++..... ..-++
T Consensus 185 r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p 263 (400)
T COG3071 185 RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDP 263 (400)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcCh
Confidence 35556667777777778888888888887777655443 35666666666666666666677766332 23356
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 035503 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548 (788)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (788)
..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.+.+.++.+.-++..+.-.+..+ .++..+..|+..|
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p~L~~tLG~L~ 338 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP-EDPLLLSTLGRLA 338 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC-CChhHHHHHHHHH
Confidence 6666778888888999999999888888776665 2333456667777777777777777666 4556777777777
Q ss_pred HHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 549 AKCGNIHQAKRVFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
.+.+.|.+|...|+...+ ++..+|+.+.+++.+.|+..+|.+.+++...
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 777777777777765443 5555666666666666666666666666443
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=7.2e-10 Score=102.76 Aligned_cols=218 Identities=14% Similarity=0.125 Sum_probs=141.5
Q ss_pred hhcCChHHHHHHHHhcccCChhHH---HHHHHHHHHcCChhHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHH
Q 035503 378 AKCERIDNAKQVFNSIILRDVVLW---NTLLAAYADLGRSGEASRLFYQMQLEGISPN---IISWNSVILGFLRNGQMNE 451 (788)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~ 451 (788)
.-.++.++|.++|-+|.+.|..+| -++.+.|.+.|..|.|+.+++.+.+..--+. ....-.|..-|...|-+|.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 335788999999999988777665 5788899999999999999999987521111 1233456666999999999
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH----HHHHHHHHhhccCchHHHHHHHH
Q 035503 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT----TITCALSACTDVASLRNGRAIHG 527 (788)
Q Consensus 452 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~ 527 (788)
|+.+|..+.+.|. .-......|+..|-...+|++|+++-.++.+.+-.+... -|.-+...+....+++.|...++
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999987532 245677889999999999999999999998865443322 22333344444555666666666
Q ss_pred HHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh----hHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP----VYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
++.+.++ ....+-..+++.+...|++..|.+.++.+.+.|+. +...|..+|.+.|+.++.+..+.++.+
T Consensus 205 kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666555 33344444445555555555555544444443332 233344444444444444444444443
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=2.4e-11 Score=112.18 Aligned_cols=235 Identities=17% Similarity=0.114 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035503 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512 (788)
Q Consensus 433 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (788)
...-+.+..+|.+.|.+.+|...|+.-.+. .|.+.||-.|-.+|.+.++++.|+.++.+-++ ..|-.+|+.
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l----- 293 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYL----- 293 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhh-----
Confidence 333455556666666666666666655444 34555566666666666666666666666554 234444332
Q ss_pred hhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHH
Q 035503 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEAL 589 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 589 (788)
...+..+...++.++|.++|+...+ .++.+...+...|...++++-|+
T Consensus 294 -----------------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Al 344 (478)
T KOG1129|consen 294 -----------------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMAL 344 (478)
T ss_pred -----------------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHH
Confidence 2223333333334444444433222 12223333344445555555555
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 035503 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669 (788)
Q Consensus 590 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 669 (788)
.+|+++++.|+ -+...|..+.-+|...+++|-++.-|+++... .-.| .
T Consensus 345 ryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~------------------------------~ 392 (478)
T KOG1129|consen 345 RYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQP------------------------------G 392 (478)
T ss_pred HHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCc------------------------------c
Confidence 55555555552 24444444444555555555555554444321 0001 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.-..+|.++.......||+..|.+.|+-++.-+|++.+.+++|+.+-.+.|+.++|..+++......+
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 12458999999999999999999999999999999999999999999999999999999998876553
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=1.4e-08 Score=105.44 Aligned_cols=495 Identities=14% Similarity=0.080 Sum_probs=284.2
Q ss_pred cCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHh---cccCCchHH-------------------HHH----HHHHHHHc
Q 035503 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC---GALGWVGFG-------------------RAV----HGYVLKVG 212 (788)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~~~~a-------------------~~~----~~~~~~~~ 212 (788)
..+.+++++.-+.....++...+..++..+...+ ...++.+++ ... +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777766666666666555544332 223333333 111 11111223
Q ss_pred CCCchhhhhHHHHHhHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCC-HHHHHH
Q 035503 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA---RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT-RVSVTS 288 (788)
Q Consensus 213 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ 288 (788)
+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-....-.|+ ...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455677788888888888888888888887643 2445788888888888888888888887655432343 333333
Q ss_pred HHHHhc-CcCChhHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 035503 289 ILSASA-NLDALDEGKQAHAVAVING--M--ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363 (788)
Q Consensus 289 ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 363 (788)
.-+.|. +.+..+++...-..++... . ......|..+.-+|...- .+.+..+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A------------~~a~~~s------------ 454 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA------------RQANLKS------------ 454 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh------------hcCCChH------------
Confidence 334444 3566777766666665521 0 111222222222222110 0000000
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHHhccc---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 035503 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIIL---RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440 (788)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 440 (788)
. +.....+++..+++..+ .|+...-.+.--|+..++.+.|.+..++..+.+-.-+...|..|.
T Consensus 455 ---------e-----R~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLA 520 (799)
T KOG4162|consen 455 ---------E-----RDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLA 520 (799)
T ss_pred ---------H-----HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 0 00012344444444432 233222233344566778888888888888776667777888788
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC-CCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCch
Q 035503 441 LGFLRNGQMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519 (788)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 519 (788)
-.+...+++.+|+.+.+...+. |. |......-+..-..-++.++|+.....++.. --+...+...+. .|.
T Consensus 521 LvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~g~- 591 (799)
T KOG4162|consen 521 LVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----EGK- 591 (799)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----hhh-
Confidence 8888888888888888776433 22 2222222223333467777777777776541 000011111010 111
Q ss_pred HHHHHHHHHHHH--cCCCCChhHHHHHHHHHHHc---CCHHHHHHHHhhCCCCCh------hhHHHHHHHHHhCCCHHHH
Q 035503 520 RNGRAIHGYLIR--HDLCLPTPIVTSLVDMYAKC---GNIHQAKRVFDISPSKEL------PVYNAMISGYAMHGLAVEA 588 (788)
Q Consensus 520 ~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A 588 (788)
..+....+.- ..+...+..+..+....... -..+..+..+...+.++. ..|......+.+.++.++|
T Consensus 592 --~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a 669 (799)
T KOG4162|consen 592 --LLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEA 669 (799)
T ss_pred --hhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHH
Confidence 1111111000 11111222222222222111 111111122222222332 2566778888999999999
Q ss_pred HHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHH--HHH
Q 035503 589 LALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALR--VIL 664 (788)
Q Consensus 589 ~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~ 664 (788)
...+.+.... .| ....|......+...|..++|.+.|.... -+.|+ +.....++.++.+.|+..-|.. ++.
T Consensus 670 ~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 670 RSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred HHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 9888886553 34 44556666667888999999999998776 67787 6778899999999998777766 776
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 665 TM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 665 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.+ ..+| ++..|..++....+.|+.++|-.+|.-++++++.+|.
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 66 4444 4679999999999999999999999999999988764
No 66
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.2e-07 Score=96.82 Aligned_cols=565 Identities=13% Similarity=0.084 Sum_probs=283.6
Q ss_pred hhHHHHHHhccCChHHHHHHhccCCC--CCcc-----cHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 035503 119 ETKLVVFYAKCDALDVASRLFCRLRV--KNVF-----SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191 (788)
Q Consensus 119 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 191 (788)
+..+...|.+.|=+..|++.+..+.. +.++ .-..+ ..|.-.-.++++++.++.|...+++.|.-+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56677778888888888888876642 1111 11112 2344445678888999999888777776665555555
Q ss_pred hcccCCchHHHHHHHHHHHH-----------cCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCC---------------
Q 035503 192 CGALGWVGFGRAVHGYVLKV-----------GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA--------------- 245 (788)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------- 245 (788)
|+..=..+...++|+..... ++..|+.+.-..|.+.|+.|++.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 55444444555555554432 3466777788889999999999999888876410
Q ss_pred ----C-----CcchHHH-------------HHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHH-------------HH
Q 035503 246 ----R-----NVVAWNS-------------MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS-------------IL 290 (788)
Q Consensus 246 ----~-----~~~~~~~-------------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-------------ll 290 (788)
| |...+-. .|..|.+.=++...-.+...+.. +.-+....-. |.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD--~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD--VDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc--CCCcHHHHHHHHHHHhccCChHHHH
Confidence 0 1111111 22333333222222222222221 1112222222 22
Q ss_pred HHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCC-----
Q 035503 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS----- 365 (788)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----- 365 (788)
.-+.+.+++..-...++..+..| ..|..++|+|...|+..++-.+- ++ ..++.--+..+..||....|
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fL----keN~yYDs~vVGkYCEKRDP~lA~v 918 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FL----KENPYYDSKVVGKYCEKRDPHLACV 918 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hc----ccCCcchhhHHhhhhcccCCceEEE
Confidence 23334455555566666666667 45788899999888877654321 11 11111111122233333211
Q ss_pred ----------------chhHHHHHHHHHhhcCChHHHHHHHHh-----------cc------cCChhHHHHHHHHHHHcC
Q 035503 366 ----------------DVVVASSIVDMYAKCERIDNAKQVFNS-----------II------LRDVVLWNTLLAAYADLG 412 (788)
Q Consensus 366 ----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~-----------~~------~~~~~~~~~l~~~~~~~g 412 (788)
....+....+.+.+..+.+--.+++.+ .. ..|+.......+++...+
T Consensus 919 aYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtad 998 (1666)
T KOG0985|consen 919 AYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTAD 998 (1666)
T ss_pred eecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcC
Confidence 112344444444444444443333321 11 135556666777777788
Q ss_pred ChhHHHHHHHHHHHcC--CCCchhHHHHHHHH---------------------------HHhcCCHHHHHHHHHHhhhCC
Q 035503 413 RSGEASRLFYQMQLEG--ISPNIISWNSVILG---------------------------FLRNGQMNEAKDMFLQMQSLG 463 (788)
Q Consensus 413 ~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~---------------------------~~~~g~~~~A~~~~~~~~~~g 463 (788)
-..+-++++++..-.+ +.-+...-|.|+-. +...+-+++|..+|++..-
T Consensus 999 Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~-- 1076 (1666)
T KOG0985|consen 999 LPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM-- 1076 (1666)
T ss_pred CcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc--
Confidence 8888888887776432 11112222333322 3333444555555543211
Q ss_pred CCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHH
Q 035503 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543 (788)
Q Consensus 464 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 543 (788)
+....+.||. .-+..++|.++-++. ..+..|..+..+-.+.|.+.+|.+-|-++ .++..|..
T Consensus 1077 ---n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~e 1138 (1666)
T KOG0985|consen 1077 ---NVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLE 1138 (1666)
T ss_pred ---cHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHH
Confidence 1111111111 112222222222211 12345555555555555555554444332 34445555
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHH
Q 035503 544 LVDMYAKCGNIHQAKRVFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621 (788)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 621 (788)
.++...+.|+|++-.+.+....+ +.+..=..|+-+|++.++..+-++.. ..||......+.+-|...|.++
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~ 1211 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYE 1211 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhH
Confidence 55555555555555555543332 12222344555555555554433332 1345555555555555555555
Q ss_pred HHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-------------------------C--CCCHHH
Q 035503 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP-------------------------C--DPDAHI 674 (788)
Q Consensus 622 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------------------~--~p~~~~ 674 (788)
.|.-+|... ..|..|+..+...|++..|.+.-+++. . --.+.-
T Consensus 1212 aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhade 1281 (1666)
T KOG0985|consen 1212 AAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADE 1281 (1666)
T ss_pred HHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHh
Confidence 554444322 133444444444555444444433331 0 011234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
...++..|...|-+++-+.+++.++.++.-+...+..|+-+|.+-. .++-.+.++.
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~L 1337 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKL 1337 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence 4556666777777888888888888887777777777777776643 3444444433
No 67
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.37 E-value=8.7e-08 Score=98.36 Aligned_cols=442 Identities=14% Similarity=0.103 Sum_probs=277.1
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHH
Q 035503 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310 (788)
Q Consensus 231 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (788)
.++.+|+.+|-+ .|. -...|..|....++++|+.+-+. .|.+.=...-.+.++++...|+-+.|-++
T Consensus 545 kkfk~ae~ifle---qn~--te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~el----- 611 (1636)
T KOG3616|consen 545 KKFKEAEMIFLE---QNA--TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAEL----- 611 (1636)
T ss_pred hhhhHHHHHHHh---ccc--HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhh-----
Confidence 457777777643 211 13345666666777777766543 22222122223344555555555544332
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChhHHHHHHH--hcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHH
Q 035503 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFS--RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388 (788)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (788)
..+..--.+.|..|.+.|.+-+|.+.-. +....|......+-.++.+.. .|....+.|-+..++++|.+
T Consensus 612 ----k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~e-----lydkagdlfeki~d~dkale 682 (1636)
T KOG3616|consen 612 ----KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGE-----LYDKAGDLFEKIHDFDKALE 682 (1636)
T ss_pred ----ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhH-----HHHhhhhHHHHhhCHHHHHH
Confidence 1122223456778888888877766542 222233333333344444433 66777777777778888888
Q ss_pred HHHhccc------------C-ChhH-HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 035503 389 VFNSIIL------------R-DVVL-WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454 (788)
Q Consensus 389 ~~~~~~~------------~-~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 454 (788)
.|.+-.. | .+++ -......+...|+++.|+..|-+... ....+.+......+.+|+.
T Consensus 683 ~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ 753 (1636)
T KOG3616|consen 683 CFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAIS 753 (1636)
T ss_pred HHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHh
Confidence 7765421 1 1111 12334455566777777666654322 2334566777888999999
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCC
Q 035503 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534 (788)
Q Consensus 455 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 534 (788)
+++.+.+... ...-|..+.+.|...|+++.|.++|.+.- .+.-.+..|.+.|+++.|.++-.+. .|+
T Consensus 754 ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~ 820 (1636)
T KOG3616|consen 754 ILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGP 820 (1636)
T ss_pred HHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCc
Confidence 9998877632 34557778889999999999999887642 2344567788999999888776554 455
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHH
Q 035503 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD--SITFTNILN 612 (788)
Q Consensus 535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~ 612 (788)
......|..-++-+-+.|++.+|.++|-.+..|+. .|..|-++|..+..+++.++- .|+ ..|...+..
T Consensus 821 e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 821 EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAK 890 (1636)
T ss_pred hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHH
Confidence 56667777777888889999999999887777764 367788899999888888772 333 356667777
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC--CHH--HHH------HHHHHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP--DAH--IIG------SLLSTC 682 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~--~~~------~l~~~~ 682 (788)
-+...|+...|...|-++- -|..-+++|...+.+++|.++.+.-.... ... .|- +....+
T Consensus 891 e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkll 960 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLL 960 (1636)
T ss_pred HHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHH
Confidence 7889999999988886652 34556778888888888888776653210 111 121 112233
Q ss_pred HhcCCHHHHHHH------HHHHHh-----cCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 683 VKSNETELAEYI------SEHLLQ-----LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 683 ~~~g~~~~A~~~------~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
-++|-.+.|+.. |+-+++ .....+.++..++..+...|++++|.+.|-..++.+
T Consensus 961 nk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 961 NKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 445555554442 111211 223357788889999999999999988887766654
No 68
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=3.9e-07 Score=97.10 Aligned_cols=629 Identities=13% Similarity=0.134 Sum_probs=360.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHH
Q 035503 47 YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFY 126 (788)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (788)
-+..+..+++.|.+++++-+. .+.|..|+ |-.+++...+ -+.+++.++...+.+.++ +..|.. .++..+
T Consensus 484 p~KVi~cfAE~Gqf~KiilY~---kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~-~~~die---~I~DlF 552 (1666)
T KOG0985|consen 484 PAKVIQCFAETGQFKKIILYA---KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE-PLADIE---QIVDLF 552 (1666)
T ss_pred cHHHHHHHHHhcchhHHHHHH---HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC-CcccHH---HHHHHH
Confidence 356788999999999987665 45677777 5555655544 567777777777766441 222221 222222
Q ss_pred hcc----------------CChHHH---HHHhcc--CCCC---------Cc---ccHHHHHHHHHcCCCchHHHHHHHHH
Q 035503 127 AKC----------------DALDVA---SRLFCR--LRVK---------NV---FSWAAIIGLNCRVGLSEKALIGFVEM 173 (788)
Q Consensus 127 ~~~----------------g~~~~A---~~~~~~--~~~~---------~~---~~~~~li~~~~~~g~~~~A~~~~~~m 173 (788)
... ..+++. .++++. +..| +. .-|..+.+.|.++|-...|++.|.+.
T Consensus 553 me~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl 632 (1666)
T KOG0985|consen 553 MELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDL 632 (1666)
T ss_pred HHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccH
Confidence 111 112111 111111 0112 11 23777888999999999999888776
Q ss_pred HHC---CCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCC------
Q 035503 174 QED---GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI------ 244 (788)
Q Consensus 174 ~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------ 244 (788)
..- -+..+...-. -+-.+...-.++.+.+.+..|+..++..|..+...+..-|+..=-.+...++|+...
T Consensus 633 ~DIKR~vVhth~L~pE-wLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~ 711 (1666)
T KOG0985|consen 633 YDIKRVVVHTHLLNPE-WLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLY 711 (1666)
T ss_pred HHHHHHHHHhccCCHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHH
Confidence 331 0111110001 112233445678889999999999988888888888888888777778888888762
Q ss_pred ---------CCCcchHHHHHHHHHHCCChhHHHHHHHHH------------HHcC---CCC-----CHHHHHHHHHHhcC
Q 035503 245 ---------ARNVVAWNSMIVGYVQNGLNEEAIRVFYEM------------TLEG---VEP-----TRVSVTSILSASAN 295 (788)
Q Consensus 245 ---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m------------~~~g---~~p-----~~~t~~~ll~~~~~ 295 (788)
..|....-.-|.+.++.|++.+..++.++- ++.. -.| |.+-|..=+-.|.-
T Consensus 712 yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLy 791 (1666)
T KOG0985|consen 712 YFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 791 (1666)
T ss_pred HHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHH
Confidence 235555566788889999988887766542 1111 111 22222222222222
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHH--------------HHHHhcCCCC-chhHHHHHHHHH
Q 035503 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE--------------VVFSRMVERD-IVTWNLLIASYV 360 (788)
Q Consensus 296 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--------------~~~~~~~~~~-~~~~~~li~~~~ 360 (788)
.++...-.+++-+- -+....+.+-..|++ ....++.+ ++.++..+++ .......+....
T Consensus 792 rnn~~kyIE~yVQk--vNps~~p~VvG~LLD----~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i 865 (1666)
T KOG0985|consen 792 RNNLQKYIEIYVQK--VNPSRTPQVVGALLD----VDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLI 865 (1666)
T ss_pred HhhHHHHHHHHHhh--cCCcccchhhhhhhc----CCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 22222222222211 111112222222222 22222222 1222333332 223445566777
Q ss_pred HcCCCchhHHHHHHHHHhhcCChHHH-HH---HHHhc------ccCCh-----------------------hHHHHHHHH
Q 035503 361 QSGQSDVVVASSIVDMYAKCERIDNA-KQ---VFNSI------ILRDV-----------------------VLWNTLLAA 407 (788)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A-~~---~~~~~------~~~~~-----------------------~~~~~l~~~ 407 (788)
+.|..|+.++++|...|...++-.+. ++ .++.. .++|+ ..|-...+-
T Consensus 866 ~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRY 945 (1666)
T KOG0985|consen 866 QEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARY 945 (1666)
T ss_pred hccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHH
Confidence 77778888888888888766543321 11 01110 01111 112233333
Q ss_pred HHHcCChhHHHH-----------HHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHHhh-hC-CCCCChhhHH
Q 035503 408 YADLGRSGEASR-----------LFYQMQLEGI--SPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SL-GVQPNLITWT 472 (788)
Q Consensus 408 ~~~~g~~~~a~~-----------~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~-g~~~~~~~~~ 472 (788)
+....+.+--.+ +.++..+.++ ..|..-....+.+++..+-..+-+++++++. +. -+.-+...-|
T Consensus 946 lv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQn 1025 (1666)
T KOG0985|consen 946 LVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQN 1025 (1666)
T ss_pred HHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhh
Confidence 333333332222 2222232222 2334444555667777777777777777762 22 1222223333
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 035503 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552 (788)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (788)
.|+-.-.+. +..+..++.+++-.-+ .|+ +...+...+-+++|..+|+..-. +..+...|+ -..+
T Consensus 1026 LLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLi---e~i~ 1089 (1666)
T KOG0985|consen 1026 LLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLI---ENIG 1089 (1666)
T ss_pred hHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHH---HHhh
Confidence 333333332 3445566666654432 222 22334555667777777766432 222333333 2456
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHh
Q 035503 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 553 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 632 (788)
.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+ ..|+..|..+++.+.+.|.+++-.+++..+.+
T Consensus 1090 ~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 677777777766554 4699999999999999999988866 34677899999999999999999998876644
Q ss_pred hcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 633 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
. .-.|..+ ..|+-+|.+.+++.|-.+++. -|+..-....+.-|...|.++.|.-+|.. ..-|..|
T Consensus 1162 k-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~L 1226 (1666)
T KOG0985|consen 1162 K-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKL 1226 (1666)
T ss_pred h-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHH
Confidence 3 4455544 468899999999999888874 36777777888889999999999888765 4457778
Q ss_pred HHHHHhCCCcHHHHHHHHHH
Q 035503 713 SNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 713 ~~~~~~~g~~~~A~~~~~~~ 732 (788)
+..+...|++..|.+.-++.
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 88888888888887766554
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.35 E-value=2.2e-10 Score=118.20 Aligned_cols=230 Identities=14% Similarity=0.187 Sum_probs=170.2
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------CC-
Q 035503 504 TTITCALSACTDVASLRNGRAIHGYLIRH-------DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-------KE- 568 (788)
Q Consensus 504 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~- 568 (788)
.+...+...|...|+++.|...++.+++. ....-....+.++..|...+++++|..+|+++.. ++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777777788888888777777664 2211122344578888999999999888876542 22
Q ss_pred h---hhHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCCHh-HHHHHHHHhhccCcHHHHHHHHHhcHhhcC--C
Q 035503 569 L---PVYNAMISGYAMHGLAVEALALFKNLQQK-----G-IDPDSI-TFTNILNACSHAGLVNEGLELFVGMFSDHQ--V 636 (788)
Q Consensus 569 ~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~ 636 (788)
+ .+++.|..+|.+.|++++|..++++..+- + ..|... .+..+...|+..+++++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 36778888999999999998888876541 1 122332 355566679999999999999998776544 2
Q ss_pred CCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 035503 637 KPS----MEHFGCVVNLLSRCGNLDEALRVILTMP---------CDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQL- 701 (788)
Q Consensus 637 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 701 (788)
.++ ..++..|+..|...|++++|.++++++- ..+. ...++.++..|.+.+++++|..+|..++.+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 4577899999999999999999998871 1222 346778889999999999999999887753
Q ss_pred ---CCCC---CchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 702 ---EPDN---PGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 702 ---~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
.|++ ..+|.+|+.+|..+|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4554 4578899999999999999999988875
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.7e-08 Score=98.47 Aligned_cols=448 Identities=13% Similarity=0.092 Sum_probs=232.9
Q ss_pred HHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 035503 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334 (788)
Q Consensus 255 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 334 (788)
+..+..+|++++|.....++...+ +-|...+..=+-+..+.+.+++|..+.+.-.. ...+..-+-.-..+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccH
Confidence 345556677777777777777654 34444555555556666666666643322110 011111111112333456666
Q ss_pred hHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCCh
Q 035503 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414 (788)
Q Consensus 335 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 414 (788)
++|+..++.....+ ..+...-...+.+.|++++|..+|+.+.+.+...+..-+++-+..-
T Consensus 96 Dealk~~~~~~~~~------------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~-- 155 (652)
T KOG2376|consen 96 DEALKTLKGLDRLD------------------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV-- 155 (652)
T ss_pred HHHHHHHhcccccc------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--
Confidence 66666666332221 1233344455566667777777776665544444333332211100
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHH---HHHHHhcCCHHHHHHHHHHhhhC-------CCCCCh-------hhHHHHHHH
Q 035503 415 GEASRLFYQMQLEGISPNIISWNSV---ILGFLRNGQMNEAKDMFLQMQSL-------GVQPNL-------ITWTTLISG 477 (788)
Q Consensus 415 ~~a~~~~~~m~~~~~~~~~~~~~~l---l~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~-------~~~~~li~~ 477 (788)
..+... ..+......| ..+|..+ ...+...|++.+|+++++...+. +-..+. ..--.+..+
T Consensus 156 ~a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 156 AAALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred HHhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 000111 0122222223 2233333 33456688888888888876211 100001 111234456
Q ss_pred HHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHH---HHhhccCchHH--HHHHHHHHHHc-------CC--CCChhHHHH
Q 035503 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCAL---SACTDVASLRN--GRAIHGYLIRH-------DL--CLPTPIVTS 543 (788)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~--a~~~~~~~~~~-------~~--~~~~~~~~~ 543 (788)
+...|+.++|..++...++.. .+|........ .+...-.++.. +...++..... .. ..-..++..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888764 44442221111 11111111111 11111110000 00 001112222
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCCCh-hhHHHHHH-HH-HhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccC
Q 035503 544 LVDMYAKCGNIHQAKRVFDISPSKEL-PVYNAMIS-GY-AMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACSHAG 618 (788)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~-~~-~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g 618 (788)
.+....-.+..+.+.+....++...+ ..+..++. +. ++...+.+|.+++...-+. .|.. ......+......|
T Consensus 313 ~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 313 NALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcC
Confidence 22223334555666666666665332 22333333 22 2233577888888887554 3433 34444555678899
Q ss_pred cHHHHHHHHHhcHhh-----cCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHh
Q 035503 619 LVNEGLELFVGMFSD-----HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM--------PCDPDA-HIIGSLLSTCVK 684 (788)
Q Consensus 619 ~~~~A~~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~~~~~~ 684 (788)
+++.|++++...... ..+.-.+.+...+...+.+.++.+-|..++.++ ...+.. ..|..++..-.+
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 999999999822110 022334556667888888888877676666655 122222 233334444567
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
+|+-++|...++++++.+|++..+...+.-+|.+.. .+.|..+-+.
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 799999999999999999999999999999998875 4666665543
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=5.8e-10 Score=121.60 Aligned_cols=244 Identities=12% Similarity=0.018 Sum_probs=175.2
Q ss_pred CchHHHHHHHHHHhCCCCCCHH-HHHHHHHHhh---------ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 035503 483 CGNEAILFFQEMLETGIKPSTT-TITCALSACT---------DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552 (788)
Q Consensus 483 ~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (788)
.+++|...|++..+ ..|+.. .+..+..++. ..+++++|...++++++.+| .+...+..++.++...|
T Consensus 276 ~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 34677777777776 345433 3333333322 23457889999999999888 67788888899999999
Q ss_pred CHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHHHHHHHH
Q 035503 553 NIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNEGLELFV 628 (788)
Q Consensus 553 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~ 628 (788)
++++|...|++..+ .+...|..+..++...|++++|+..+++..+. .|+. ..+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999987654 34457888899999999999999999998886 4543 233334445666889999999999
Q ss_pred hcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 629 GMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 629 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
++... ..|+ +..+..++.+|...|+.++|...+.++ +..|+. ..++.+...|...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88643 2354 445678889999999999999999887 344443 34556666677777 47888777777644333
Q ss_pred CchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 706 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+.....+..+|.-.|+.+.+... +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33333478888888988777776 7776665
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=1.2e-10 Score=103.01 Aligned_cols=162 Identities=16% Similarity=0.194 Sum_probs=140.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVN 648 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 648 (788)
+...|.-.|...|+...|...+++.++. .| +..++..+...|.+.|..+.|.+.|++++ .+.|+ .++.+..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 3556778899999999999999998885 45 45678888888999999999999999887 55666 678889999
Q ss_pred HHhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHH
Q 035503 649 LLSRCGNLDEALRVILTMPCDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724 (788)
Q Consensus 649 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 724 (788)
.+|..|++++|...|+++...|. ..+|.+++....+.|+.+.|+..++++++.+|+.+.....++..+++.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999854443 45888998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCC
Q 035503 725 VSQVRDIMKEKGL 737 (788)
Q Consensus 725 A~~~~~~~~~~~~ 737 (788)
|..++++....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999888775
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=9.6e-07 Score=90.29 Aligned_cols=625 Identities=12% Similarity=0.055 Sum_probs=311.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCC
Q 035503 52 SSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131 (788)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (788)
--+.+.+++..-+.+.+.++. +.+-...|.....-.+...|+-++|.......++.. ..+..-|..+.-.+....+
T Consensus 15 lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d---~~S~vCwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 15 LKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND---LKSHVCWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC---cccchhHHHHHHHHhhhhh
Confidence 344567788888888888776 334445666666666677888888888777777654 5666778888888888888
Q ss_pred hHHHHHHhccCC--CC-CcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHH
Q 035503 132 LDVASRLFCRLR--VK-NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208 (788)
Q Consensus 132 ~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 208 (788)
+++|+++|...- ++ |...|.-+.-.=.+.|+++.....-....+.. +.....|.....+.--.|+...|..+.+..
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997653 33 34445544444456677777777766666532 223346777777777788888888888888
Q ss_pred HHHcC-CCchhhhhHHH------HHhHhcCChHHHHHHHhcCCCC--Ccc-hHHHHHHHHHHCCChhHHHHHHHHHHHcC
Q 035503 209 LKVGF-DGCVFVASSLI------DMYGKCGDLEEARKVFDGMIAR--NVV-AWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278 (788)
Q Consensus 209 ~~~~~-~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g 278 (788)
.+... .|+...+.... ....+.|.++.|.+-+...... |-. .-..-...+.+.+++++|..++..++..
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r- 248 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER- 248 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh-
Confidence 77652 44444443322 3345677788888777654332 211 2223345667888999999999998876
Q ss_pred CCCCHHHHHHHHHHhc--CcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchh-HHHH
Q 035503 279 VEPTRVSVTSILSASA--NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT-WNLL 355 (788)
Q Consensus 279 ~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l 355 (788)
.||...|...+..+. -.+..+....++...-..-.. .......=++......-.+..-.++..+.++++.+ +..+
T Consensus 249 -nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl 326 (700)
T KOG1156|consen 249 -NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL 326 (700)
T ss_pred -CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence 477777766665554 223333333444443332110 00000000111111111122223333334443322 2222
Q ss_pred HHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhc--ccCChhHH--HHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 035503 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI--ILRDVVLW--NTLLAAYADLGRSGEASRLFYQMQLEGISP 431 (788)
Q Consensus 356 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 431 (788)
..-|-... ...+...++..|...-.-.......+.- ..|....| ..++..+-..|+++.|+.+++.+..+ .|
T Consensus 327 ~SLyk~p~--k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 327 RSLYKDPE--KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred HHHHhchh--HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 22111111 1112222222222211111111000000 12222222 23444555556666666666555544 33
Q ss_pred ch-hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035503 432 NI-ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510 (788)
Q Consensus 432 ~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (788)
+. ..|..=...+...|++++|..++++..+.. .+|...-.--..-..++++.++|.++.....+.|. +......-+
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~m 479 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEM 479 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHh
Confidence 32 223333344555556666655555554432 11222222333344455555555555555554442 111111100
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCChhHHHH--HHHHHHHcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhC
Q 035503 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS--LVDMYAKCGNIHQAKRVFDISPS------KELPVYNAMISGYAMH 582 (788)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~ 582 (788)
.-+|.. =+.+|.++|++..|++-|..+.+ .|-.-| -.-|.+.
T Consensus 480 ---------------------------qcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDf---htyc~rk 529 (700)
T KOG1156|consen 480 ---------------------------QCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDF---HTYCMRK 529 (700)
T ss_pred ---------------------------hhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhH---HHHHHhc
Confidence 011221 24567777777777776655432 111111 1123333
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCC-CCCcchHHHHH----HHHhhcC-Ch
Q 035503 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV-KPSMEHFGCVV----NLLSRCG-NL 656 (788)
Q Consensus 583 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~p~~~~~~~l~----~~~~~~g-~~ 656 (788)
|-...=+++++.-.. +...+.-+.+ ...|+++|-+|...... .+.......+. ....++. +.
T Consensus 530 ~tlrsYv~ll~~~d~--L~~~p~y~~A----------a~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~ 597 (700)
T KOG1156|consen 530 GTLRSYVELLEWEDN--LRSSPYYLRA----------AKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAK 597 (700)
T ss_pred CcHHHHHHHHHHHHh--hccChHHHHH----------HHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHH
Confidence 333333333322111 1111111111 12455555555332100 01111111111 1111111 11
Q ss_pred HHHHHHHHhC--------------CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 657 DEALRVILTM--------------PCDPDAHIIGSLLSTCVKS-NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 657 ~~A~~~~~~~--------------~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
..|.+--... +..+|.. -++..+.+- .=.++|..++.......+++..+|..-..+|.+.|.
T Consensus 598 kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k 674 (700)
T KOG1156|consen 598 KKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGK 674 (700)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHH
Confidence 1111111111 2234443 233333333 345779999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHCC
Q 035503 722 WNEVSQVRDIMKEKG 736 (788)
Q Consensus 722 ~~~A~~~~~~~~~~~ 736 (788)
+.-+.+..+.+....
T Consensus 675 ~~l~~~~~~~~~~~~ 689 (700)
T KOG1156|consen 675 FLLALACLNNAEGIH 689 (700)
T ss_pred HHHHHHHHHhhhhhc
Confidence 999999988876544
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=1.5e-10 Score=115.18 Aligned_cols=147 Identities=11% Similarity=-0.077 Sum_probs=76.7
Q ss_pred CCCchHHHHHHHHHHhCC-CCCC--HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHH
Q 035503 481 NSCGNEAILFFQEMLETG-IKPS--TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (788)
.+..+.++.-+.+++... ..|+ ...+......+...|+.++|...++++++..| .+...++.++..+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 355566666666666431 1121 22344445555666666666666666666655 4555666666666666666666
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 558 KRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 558 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
...|+...+ .+..+|..++.++...|++++|++.|++..+. .|+..........+...++.++|...+++.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 666654433 22345555555566666666666666665553 232221111111223345556666655443
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=2.7e-10 Score=124.21 Aligned_cols=212 Identities=12% Similarity=0.025 Sum_probs=170.4
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc---------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCH
Q 035503 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC---------GNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLA 585 (788)
Q Consensus 518 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 585 (788)
.+++|...++++++.+| .+...+..++.+|... +++++|...+++..+ .+..+|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 45789999999999988 5667777777766532 448899999987765 4556888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc-hHHHHHHHHhhcCChHHHHHHHH
Q 035503 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME-HFGCVVNLLSRCGNLDEALRVIL 664 (788)
Q Consensus 586 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 664 (788)
++|+..|++.++.+ +.+...+..+..++...|++++|+..++++. .+.|+.. .+..++..+...|++++|.+.++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998864 3345677778888999999999999999987 4566643 33445556777899999999998
Q ss_pred hCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 665 TMP--CDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 665 ~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++. ..|+ +..+..++.++...|+.++|+..++++....|++......++..|...| ++|...++.+.+..
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 873 2344 4457778888889999999999999999999998888999999999998 48888888876643
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=9.2e-08 Score=99.53 Aligned_cols=234 Identities=15% Similarity=0.064 Sum_probs=164.3
Q ss_pred CCcccHHHHHH--HhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCC----------
Q 035503 77 IGPEIYGELLQ--GCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV---------- 144 (788)
Q Consensus 77 ~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 144 (788)
-|+.|-.+++. .|...|+.+.|.+-.+.+.. ..+|..+.++|.+..++|-|.-++-.|..
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 46667777764 47788999999887766543 34899999999999999999888877742
Q ss_pred -CCc-ccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhH
Q 035503 145 -KNV-FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222 (788)
Q Consensus 145 -~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (788)
.|. ..=..+.......|..++|+.+|.+-++. -.+=+.|-..|.+++|.++-+.--+-.+ ..+|..
T Consensus 796 ~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~ 863 (1416)
T KOG3617|consen 796 QQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYN 863 (1416)
T ss_pred HhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHH
Confidence 111 11122233345679999999999987763 2333445677899999887665322221 245556
Q ss_pred HHHHhHhcCChHHHHHHHhcCCC-----------------------CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCC
Q 035503 223 LIDMYGKCGDLEEARKVFDGMIA-----------------------RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279 (788)
Q Consensus 223 li~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 279 (788)
-..-+-..+|.+.|++.|++... +|...|.....-.-..|+.+.|+.+|...+.
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 66666777889999988887622 2444555555555567888888888877654
Q ss_pred CCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcC
Q 035503 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345 (788)
Q Consensus 280 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 345 (788)
|.++.+..|-.|+.++|.++-++ .-|....-.|.+.|-..|++.+|..+|.+..
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56777788888999998887664 3355566678899999999999999998763
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=9.3e-08 Score=97.46 Aligned_cols=431 Identities=10% Similarity=0.041 Sum_probs=216.5
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 035503 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK 330 (788)
Q Consensus 251 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 330 (788)
|..++.+| ..+++...+.+.+.+.+. .+-...|.....-.+...|+.++|.......++.. ..+.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 34444443 445555555555555542 22223333333333444555555555554444422 2233444444444444
Q ss_pred cCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHH
Q 035503 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410 (788)
Q Consensus 331 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 410 (788)
..++++|++.|.....-++ .|...|.-+.-.-.+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~----------------------------------------------dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK----------------------------------------------DNLQILRDLSLLQIQ 121 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC----------------------------------------------CcHHHHHHHHHHHHH
Confidence 4455555555444433222 233344444444445
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCChhhHHHHH------HHHHhCCC
Q 035503 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG-VQPNLITWTTLI------SGLTQNSC 483 (788)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~ 483 (788)
.|+++.......+..+.. +.....|..+.-++.-.|++..|..+++...+.. -.|+...|.... ......|.
T Consensus 122 mRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS 200 (700)
T ss_pred HHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 555555555444444431 2223334444445555555555555555553322 123333333222 22344555
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc-CCHHHHHHHHh
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC-GNIHQAKRVFD 562 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 562 (788)
+++|++.+..-... +......-..-...+.+.+++++|..++..++...| .+...|..+..++.+- +..+....+|.
T Consensus 201 ~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-dn~~Yy~~l~~~lgk~~d~~~~lk~ly~ 278 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-DNLDYYEGLEKALGKIKDMLEALKALYA 278 (700)
T ss_pred HHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55555555443321 111111222233345556666666666666666655 4444445555555422 22222224444
Q ss_pred hCCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHH---H-HHHHHHhcHhhcC
Q 035503 563 ISPSK---ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN---E-GLELFVGMFSDHQ 635 (788)
Q Consensus 563 ~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~---~-A~~~~~~~~~~~~ 635 (788)
...+. ....-..=++...-..-.+..-+++..+.+.|+++--..+.++. -.-...+ + +..+...+ ...+
T Consensus 279 ~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L-~~~~ 354 (700)
T KOG1156|consen 279 ILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSL-SGTG 354 (700)
T ss_pred HHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhc-cccc
Confidence 33321 00000000011111122233445566677777655333333332 2211111 1 11111111 1101
Q ss_pred ----------CCCCcchH--HHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 035503 636 ----------VKPSMEHF--GCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQL 701 (788)
Q Consensus 636 ----------~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (788)
-+|..-.| ..++..+-+.|+++.|..+++.+ ...|+. ..|..-++.+...|+.+.|-..++.+.++
T Consensus 355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 13443333 37788889999999999999988 444554 35666778888899999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 702 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
|-.|..+...-+....+.++.++|..+..+....|.
T Consensus 435 D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 435 DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 888777777888999999999999999988877664
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=1.1e-07 Score=89.46 Aligned_cols=315 Identities=11% Similarity=0.056 Sum_probs=179.3
Q ss_pred HcCChhHHHHHHHHHHHcCCCCchhHHHHHHH-HHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHH
Q 035503 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVIL-GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488 (788)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 488 (788)
..-.+++|++++++.+.. .|+-...|..+. +|.+..-++-+.++++-..+. ++.++..-|.......+.=+-.-|.
T Consensus 163 mR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred HHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhH
Confidence 334567777777776654 345444444333 455666666666666665443 2223444444444333333333344
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCC
Q 035503 489 LFFQEMLETGIKPSTTTITCALS-ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567 (788)
Q Consensus 489 ~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 567 (788)
.-.+++.+.+ .....-...+++ .+..-.+-+.|.+++--+.+.- +.+...|+-.|.+++++.+|..+.+.+...
T Consensus 240 ~E~k~ladN~-~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt 314 (557)
T KOG3785|consen 240 DEKKELADNI-DQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPT 314 (557)
T ss_pred HHHHHHHhcc-cccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCCC
Confidence 3344443322 111000001111 0111233455666665555433 234556778899999999999999988775
Q ss_pred ChhhHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC
Q 035503 568 ELPVYNAMISGYAMHG-------LAVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 639 (788)
.+.-|-.-.-.+...| ...-|...|+-.-+.+..-|. ..-.++..++.-..++++.+.+++... .+ + .+
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sY-F-~N 391 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SY-F-TN 391 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HH-h-cC
Confidence 5544432222222222 334455555544333333222 223345555566678899999988874 32 2 33
Q ss_pred cchHH-HHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC-CchHHHHH
Q 035503 640 MEHFG-CVVNLLSRCGNLDEALRVILTMP---CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE-PDN-PGNYVALS 713 (788)
Q Consensus 640 ~~~~~-~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~-~~~~~~l~ 713 (788)
...|+ .++.+++..|...+|.++|-.+. .+.+......|++.|...|..+.|-.++ ++.+ |.+ ...+...+
T Consensus 392 dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIA 468 (557)
T KOG3785|consen 392 DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIA 468 (557)
T ss_pred cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHH
Confidence 34444 89999999999999999998884 2334444455666777888998876654 3433 332 33455667
Q ss_pred HHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 714 NAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 714 ~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
+.+++.|.+==|.+.|+.+....+.
T Consensus 469 n~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 469 NDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHhhhHHHccCCC
Confidence 8899999998888888877665543
No 79
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.25 E-value=1.7e-07 Score=100.05 Aligned_cols=627 Identities=12% Similarity=0.019 Sum_probs=298.9
Q ss_pred hhHHHHHHHHHHhcCCCCC-cccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHH
Q 035503 60 IREAVDLLTEMKCRNFQIG-PEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRL 138 (788)
Q Consensus 60 ~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 138 (788)
...|+..|-+-.+.. ++ ...|..|..-|+..-+.-.|.+-|+.+-+.. +.+...+......|+...+++.|..+
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccccHHHHHHH
Confidence 555665555544433 22 2356777777766667777777777776664 66677777777777777777777776
Q ss_pred hccCCCCCc---cc--HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcC
Q 035503 139 FCRLRVKNV---FS--WAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213 (788)
Q Consensus 139 ~~~~~~~~~---~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 213 (788)
.-...+.+. .. |--.--.|...++...|+.-|+...+.. +.|...|..+..+|..+|.+..|.++|+++....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr- 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR- 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-
Confidence 433332211 12 2222223456666666666666665532 1233466666677777777777777776665544
Q ss_pred CCchhhhhHHHHHhHhcCChHHHHHHHhcCCCC---------C-cchHHHHHHHHHHCCChhHHHHHHHHHH-------H
Q 035503 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR---------N-VVAWNSMIVGYVQNGLNEEAIRVFYEMT-------L 276 (788)
Q Consensus 214 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~-~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~ 276 (788)
|.+.+..-...-+-+..|.+.+|...+..+... + ..++-.+...+...|-...|.+.+++-+ .
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 223333333333445566666666666655221 0 1122222222222333333333332221 1
Q ss_pred cCCCCCHHHHHHHHHHh-----------------------cCcCChhHHH----HHHHHHHHhCCCCchhHHHHHHHHHH
Q 035503 277 EGVEPTRVSVTSILSAS-----------------------ANLDALDEGK----QAHAVAVINGMELDNVLGSSIINFYS 329 (788)
Q Consensus 277 ~g~~p~~~t~~~ll~~~-----------------------~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (788)
....-+...|..+-++| ...+....-. ..-.-.....+..+..+|..|+.-|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 11112222222222222 2222110000 00000000011112333333333222
Q ss_pred h----cC----ChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCCh
Q 035503 330 K----VG----LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDV 398 (788)
Q Consensus 330 ~----~g----~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~ 398 (788)
+ .| +...|+..+.+.++-. ..+...++.|.-. ...|++.-|.-.|-+.. +...
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~---------------ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~ 850 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC---------------ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCH 850 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh---------------hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccch
Confidence 2 11 1123334333332211 1122233333222 33345555554443332 2345
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh----hhCCCCCChhhHHHH
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM----QSLGVQPNLITWTTL 474 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~l 474 (788)
.+|..+...+.+..+++-|...|...+... +.|...|..........|+.-++..+|..- ...|--+...-|-+.
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 567777777777777777777777766542 334444444444444566666666666551 223334444445444
Q ss_pred HHHHHhCCCchHHHHHHHHHHhC---------CCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH-----cCCCCChhH
Q 035503 475 ISGLTQNSCGNEAILFFQEMLET---------GIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-----HDLCLPTPI 540 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~---------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 540 (788)
......+|+.++-+...+.+... +.+.+...|........+.+....+.....+++. .+......+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44455566655444333332111 2233345555555555566666666555554432 111122224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCH-hHHHHHHHHhhcc
Q 035503 541 VTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDS-ITFTNILNACSHA 617 (788)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-~~~~~ll~~~~~~ 617 (788)
-..++..++..|.++.|...+...... +..+-..- .+..-.|+++++.+.|++...-- -..+. +....++-+....
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~-l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTD-LTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhh-HHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 445666777778888777666544321 11111111 11134577888888888876531 11121 2233333344556
Q ss_pred CcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCCh---HHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHH
Q 035503 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL---DEALRVILTMPCDPDAHIIG---SLLSTCVKSNETELA 691 (788)
Q Consensus 618 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A 691 (788)
+.-+.|...+-+.... -+|+.....+|..++.-..+- ..+++-+.+.+...+. .|. ..-..|...|+-...
T Consensus 1089 ~~k~~A~~lLfe~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~-~~~~~ll~e~i~~~~~r~~~v 1165 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWF-CWPPGLLKELIYALQGRSVAV 1165 (1238)
T ss_pred ccchHHHHHHHHHHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHh-ccChhHHHHHHHHHhhhhHHH
Confidence 6666666665555432 234444444444443322222 2222223222111000 111 111235667888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHH
Q 035503 692 EYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 692 ~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
....+++.-.+|.++..|..|..
T Consensus 1166 k~~~qr~~h~~P~~~~~WslL~v 1188 (1238)
T KOG1127|consen 1166 KKQIQRAVHSNPGDPALWSLLSV 1188 (1238)
T ss_pred HHHHHHHHhcCCCChHHHHHHHH
Confidence 88888988899999888888864
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.25 E-value=2.9e-07 Score=98.31 Aligned_cols=578 Identities=13% Similarity=0.009 Sum_probs=313.7
Q ss_pred chhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCCC---CcccHHHHHHHHHcCCCchHHHHHHH
Q 035503 95 MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK---NVFSWAAIIGLNCRVGLSEKALIGFV 171 (788)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (788)
...+...+-+.++.. +.-...+..|...|+...+...|.++|+..-+- +...+......|++..++++|..+.-
T Consensus 474 ~~~al~ali~alrld---~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLD---VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 555666666666664 556677899999999888999999999887543 55678889999999999999998843
Q ss_pred HHHHCCC-CCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcch
Q 035503 172 EMQEDGV-SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA 250 (788)
Q Consensus 172 ~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 250 (788)
..-+... ..-..-|..+--.+...++...+..-|+...+.. +.|...|..|..+|.++|.+..|.++|.+...-++..
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 3322210 0011122223333567788899999999888877 7788999999999999999999999998875543332
Q ss_pred HHHH---HHHHHHCCChhHHHHHHHHHHHc------CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHH-------hCC
Q 035503 251 WNSM---IVGYVQNGLNEEAIRVFYEMTLE------GVEPTRVSVTSILSASANLDALDEGKQAHAVAVI-------NGM 314 (788)
Q Consensus 251 ~~~l---i~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~ 314 (788)
+-.. ...-+..|.+.+|++.+...... +..--..++..+...+...|-...+..+++..+. ...
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 2221 22345689999999999887653 1112223333333333333333333333222221 111
Q ss_pred CCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc
Q 035503 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394 (788)
Q Consensus 315 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (788)
..+...|-.+. +|..+|-... ++. +...++..+.+ -++.+.
T Consensus 710 ~~~~~~Wi~as----------dac~~f~q~e-~~~-------------------vn~h~l~il~~---------q~e~~~ 750 (1238)
T KOG1127|consen 710 QSDRLQWIVAS----------DACYIFSQEE-PSI-------------------VNMHYLIILSK---------QLEKTG 750 (1238)
T ss_pred hhhHHHHHHHh----------HHHHHHHHhc-ccc-------------------hHHHHHHHHHH---------HHHhcc
Confidence 11111111111 1112222222 111 11111111111 000000
Q ss_pred -cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----c----CCHHHHHHHHHHhhhCCCC
Q 035503 395 -LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR----N----GQMNEAKDMFLQMQSLGVQ 465 (788)
Q Consensus 395 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~----g~~~~A~~~~~~~~~~g~~ 465 (788)
-++.. +-.+ +.+.+-.-+. ...+..+|..++..|.+ . .+...|+..+.+..+.. .
T Consensus 751 ~l~~~d-~l~L------------g~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-a 814 (1238)
T KOG1127|consen 751 ALKKND-LLFL------------GYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-A 814 (1238)
T ss_pred cCcchh-HHHH------------HHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-h
Confidence 00000 0000 0000000000 01112222222222222 1 12235666666553321 1
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 466 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
.+..+|+.|.-. ...|++.-|...|-+-... .+-...+|..+.-.|....+++.|...+.......| .+...|....
T Consensus 815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~A 891 (1238)
T KOG1127|consen 815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEA 891 (1238)
T ss_pred ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHH
Confidence 255666665544 5556666666666655543 233455666666667777777777777777777666 4555555555
Q ss_pred HHHHHcCCHHHHHHHHhhC-----CC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHH---------cCCCCCHhHHH
Q 035503 546 DMYAKCGNIHQAKRVFDIS-----PS---KELPVYNAMISGYAMHGLAVEALALFKNLQQ---------KGIDPDSITFT 608 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---------~~~~p~~~~~~ 608 (788)
......|+.-++..+|..- .+ ++..-|-.-.......|+.++-+...+.+-. .+.+.....|.
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA 971 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence 5555667777777776531 11 3333344444444555555543333222211 12334556777
Q ss_pred HHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH----HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 035503 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG----CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684 (788)
Q Consensus 609 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 684 (788)
..+....+.+.+.+|.+...+.+.-...+-+...|+ ..+..++..|.++.|...+...+..-+......-+.. .-
T Consensus 972 ~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ff 1050 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FF 1050 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HH
Confidence 777777788888887777776553322333444444 4556667778888777666655443333332222222 45
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 685 SNETELAEYISEHLLQLEPDNPG---NYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.|+++++.+.|++++.+.-++.. ....++.....++..+.|...+-+....
T Consensus 1051 kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1051 KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 68888888888888887655444 3334445556677777777776555543
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.25 E-value=4.3e-06 Score=86.38 Aligned_cols=516 Identities=13% Similarity=0.068 Sum_probs=249.7
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCCh
Q 035503 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233 (788)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 233 (788)
|.+....+.|.+|+.+++.+.... .-...|..+...|+..|+++.|.++|.+. ..++.-|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 445566777888888887766542 23345777788888888888888877653 2345667788888888
Q ss_pred HHHHHHHhcCCCC--CcchHHHHHHHHHHCCChhHHHHHH-------------HH------HHHc--CCCC--CHHHHHH
Q 035503 234 EEARKVFDGMIAR--NVVAWNSMIVGYVQNGLNEEAIRVF-------------YE------MTLE--GVEP--TRVSVTS 288 (788)
Q Consensus 234 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~-------------~~------m~~~--g~~p--~~~t~~~ 288 (788)
+.|.++-++...| .+..|-.-..-+-..|++.+|.++| ++ |.+. ...| -..|...
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH 887 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence 8888887776544 2333443333333444444433332 11 1100 0112 2345555
Q ss_pred HHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchh
Q 035503 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVV 368 (788)
Q Consensus 289 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 368 (788)
+..-+...|++..|+..|-.. .-|.+.+++|-..+.|++|.++-..-...+...-...+-+-.-.| +..
T Consensus 888 f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksigg--daa 956 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGG--DAA 956 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCc--HHH
Confidence 666667778877777665432 235567788888888888887765543333222111111111111 111
Q ss_pred --------HHHHHHHHHhhcCChHHHHHHHHhccc-CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--------CC
Q 035503 369 --------VASSIVDMYAKCERIDNAKQVFNSIIL-RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI--------SP 431 (788)
Q Consensus 369 --------~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--------~~ 431 (788)
....-++..+..+.++-|.++-+-..+ +....-..+...+-..|++++|.+.+-+.++.+. .|
T Consensus 957 vkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavp 1036 (1636)
T KOG3616|consen 957 VKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVP 1036 (1636)
T ss_pred HHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhccc
Confidence 223334444444555555544433322 1122222334445567888888877777665421 11
Q ss_pred chhHHH---------HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC
Q 035503 432 NIISWN---------SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502 (788)
Q Consensus 432 ~~~~~~---------~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 502 (788)
+.+-.. ..+.++.+.+++..|.++-+.--+. .. +..|..-..+-...|++-+|..++-+.. +|+
T Consensus 1037 srfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~-~l--~dv~tgqar~aiee~d~~kae~fllran----kp~ 1109 (1636)
T KOG3616|consen 1037 SRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCED-LL--ADVLTGQARGAIEEGDFLKAEGFLLRAN----KPD 1109 (1636)
T ss_pred chhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChh-hh--HHHHhhhhhccccccchhhhhhheeecC----CCc
Confidence 111000 1122244444444444443321110 11 1222222333334444444444332221 232
Q ss_pred HHHHHHHHHHhhccCchHHHH----------------HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 035503 503 TTTITCALSACTDVASLRNGR----------------AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566 (788)
Q Consensus 503 ~~~~~~ll~~~~~~~~~~~a~----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (788)
.. +.-+...+.+..|. ++-+...+.|- .....+..-+.-+.+.|+|.+|...+-++.+
T Consensus 1110 i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~ga-rgvd~fvaqak~weq~gd~rkav~~~lkinr 1183 (1636)
T KOG3616|consen 1110 IA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGA-RGVDGFVAQAKEWEQAGDWRKAVDALLKINR 1183 (1636)
T ss_pred hH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHhcccHHHHHHHHhhhcc
Confidence 11 11111112222221 12223334443 4444555566667777888888777755532
Q ss_pred CC---------------------------hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc
Q 035503 567 KE---------------------------LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619 (788)
Q Consensus 567 ~~---------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 619 (788)
.. .....+.+.++...|..+.|.+++--+-. ....|++++....
T Consensus 1184 dst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~---------~keaida~~~~ee 1254 (1636)
T KOG3616|consen 1184 DSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFDL---------SKEAIDAFCEAEE 1254 (1636)
T ss_pred CCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhhh---------HHHHHHHHHhHHH
Confidence 11 11111112222233333333333221100 0112444555544
Q ss_pred HHHHHH---------------HHHhcHhhcCCCCC---cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035503 620 VNEGLE---------------LFVGMFSDHQVKPS---MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681 (788)
Q Consensus 620 ~~~A~~---------------~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 681 (788)
+.+|.+ +|++.++..|--.. .. .-.-++++...+++++|++-..+-..+|-..-|.++..+
T Consensus 1255 wakakqvake~~p~~~~~idk~yke~lknegkl~eli~vd-viaaidl~ien~qwdk~idtak~qnykpil~kyva~yaa 1333 (1636)
T KOG3616|consen 1255 WAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVD-VIAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAA 1333 (1636)
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchh-HHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 444433 33333322121111 11 113456777888888888777777666666666665555
Q ss_pred -HHhcCCHHHHHHHHHHHH-hcCCCCCchHHHHHH
Q 035503 682 -CVKSNETELAEYISEHLL-QLEPDNPGNYVALSN 714 (788)
Q Consensus 682 -~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 714 (788)
+...|+..+|+.++++-= -.+|.+..+|-.+..
T Consensus 1334 ~li~~~d~aq~lal~~q~ga~anpanfniyk~i~e 1368 (1636)
T KOG3616|consen 1334 HLIHEGDLAQALALLEQHGAPANPANFNIYKLIFE 1368 (1636)
T ss_pred HHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHH
Confidence 456688888888777643 245666556555443
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=1.1e-07 Score=99.86 Aligned_cols=254 Identities=15% Similarity=0.154 Sum_probs=151.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (788)
++..+...|...|++++|++++++.++. .|+ ...|..-...+-+.|++.+|...++.+...+. .|..+-+..+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHH
Confidence 3455567777888888888888888774 455 45666677777888888888888888888777 6777777778888
Q ss_pred HHcCCHHHHHHHHhhCCCCCh----------hhH--HHHHHHHHhCCCHHHHHHHHHHHHHc--CC-------------C
Q 035503 549 AKCGNIHQAKRVFDISPSKEL----------PVY--NAMISGYAMHGLAVEALALFKNLQQK--GI-------------D 601 (788)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~~~----------~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~--~~-------------~ 601 (788)
.++|++++|.+++....+.+. ..| ...+.+|.+.|++..|++.|...... .+ +
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK 352 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRK 352 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhh
Confidence 888888888888876665441 123 23567788888888887766654431 01 1
Q ss_pred CCHhHHHHHHHHhhccC---c----HHHHHHHHHhcHhhcCCCCCcc-----------hHHHHHHHH---hhcCChHHHH
Q 035503 602 PDSITFTNILNACSHAG---L----VNEGLELFVGMFSDHQVKPSME-----------HFGCVVNLL---SRCGNLDEAL 660 (788)
Q Consensus 602 p~~~~~~~ll~~~~~~g---~----~~~A~~~~~~~~~~~~~~p~~~-----------~~~~l~~~~---~~~g~~~~A~ 660 (788)
....+|..++...-+.. . ...|+++|-.+........... --..+..-. .+....+++.
T Consensus 353 ~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~ 432 (517)
T PF12569_consen 353 MTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAE 432 (517)
T ss_pred ccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHH
Confidence 22333444444322211 1 1234555555532211111000 000111101 1111111121
Q ss_pred HHHHh-----------C------CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCc
Q 035503 661 RVILT-----------M------PCDPDAHIIGSLLSTCVKS-NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722 (788)
Q Consensus 661 ~~~~~-----------~------~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 722 (788)
..-.+ . +.++|+ ++.-+... .=.++|.++++.+.+..|++..+|..-..+|.+.|++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp-----~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~ 507 (517)
T PF12569_consen 433 KAAKKEPKKQQNKSKKKEKVEPKKKDDDP-----LGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKY 507 (517)
T ss_pred HHHhhhhhhhhccccccccccCCcCCCCc-----cHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcH
Confidence 11100 0 112222 12222233 3468899999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 035503 723 NEVSQVRDI 731 (788)
Q Consensus 723 ~~A~~~~~~ 731 (788)
--|++.+.+
T Consensus 508 LLaLqaL~k 516 (517)
T PF12569_consen 508 LLALQALKK 516 (517)
T ss_pred HHHHHHHHh
Confidence 999887764
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.6e-08 Score=100.84 Aligned_cols=249 Identities=12% Similarity=0.041 Sum_probs=146.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhH-------HHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI-------VTS 543 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ 543 (788)
...+.++..+..+++.|++.+....+. .-+..-++....++...|....+.......++.|.. ...- ...
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALEL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 334555666666777777777776663 223333344444566666666666665555554431 1111 122
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHH
Q 035503 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNE 622 (788)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~ 622 (788)
++.+|.+.++++.|+..|.+....... -+...+....+++++..+...- +.|.. .....-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 344566667777777777654321110 1122233344455554444333 23332 222233556778888888
Q ss_pred HHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 623 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
|+..|.++++. .+-|...|...+-+|.+.|.+.+|++-.+.. ...|+ ...|..-+.++....+++.|.+.|+++++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888887753 2334777788888888888888888776666 34444 34566666667777888888888888888
Q ss_pred cCCCCCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 701 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
.+|++..+...+..++..+...+...++.+.
T Consensus 455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 8888877777777777664444444444443
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=5.6e-10 Score=103.35 Aligned_cols=157 Identities=9% Similarity=-0.003 Sum_probs=127.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhC
Q 035503 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481 (788)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 481 (788)
+.+.++|.+.|.+.+|.+.|+..+.+ .|-..||..|-.+|.+..+...|+.+|.+-.+. ++.++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 67889999999999999999999887 567778888999999999999999999998765 333554455677888889
Q ss_pred CCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 035503 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561 (788)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (788)
++.++|.++++...+.. +.+...+..+...|.-.++++.|..+++++++.|. .++..|..++-++.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999853 45566777777788888999999999999999998 66777777666666666666666555
Q ss_pred hh
Q 035503 562 DI 563 (788)
Q Consensus 562 ~~ 563 (788)
++
T Consensus 382 ~R 383 (478)
T KOG1129|consen 382 QR 383 (478)
T ss_pred HH
Confidence 53
No 85
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=2.9e-09 Score=103.50 Aligned_cols=199 Identities=12% Similarity=0.039 Sum_probs=103.9
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 035503 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547 (788)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (788)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+..+ .+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~------- 101 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDV------- 101 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHH-------
Confidence 4455566666666666666666666665532 22233444444455555555555555555555443 23333
Q ss_pred HHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHH
Q 035503 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLEL 626 (788)
Q Consensus 548 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~ 626 (788)
+..+...+...|++++|++.+++.......+ ....+..+..++...|++++|...
T Consensus 102 ------------------------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 102 ------------------------LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred ------------------------HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444445555555555555555554422111 223344444455566666666666
Q ss_pred HHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 035503 627 FVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702 (788)
Q Consensus 627 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 702 (788)
+++.... .|+ ...+..++..+...|++++|...++++. .+.+...+..++..+...|+.+.|....+.+....
T Consensus 158 ~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 6655432 222 3445555666666666666666665541 12233444455555666667777666666655543
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=4.3e-09 Score=104.83 Aligned_cols=149 Identities=8% Similarity=-0.169 Sum_probs=80.9
Q ss_pred cCCHHHHHHHHHHhhhCC-CCC--ChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHH
Q 035503 446 NGQMNEAKDMFLQMQSLG-VQP--NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522 (788)
Q Consensus 446 ~g~~~~A~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 522 (788)
.+..+.++.-+.++.... ..| ....|..+...|...|++++|...|++.++.. +.+...+..+...+...|+++.|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 445555666666654321 111 13445555666666666666666666666532 22345566666666666666666
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh--hhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 035503 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL--PVYNAMISGYAMHGLAVEALALFKNLQ 596 (788)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 596 (788)
...++.+++..| .+...+..++.++...|++++|.+.|+.....++ .........+...++.++|+..|++..
T Consensus 118 ~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666666666665 4455556666666666666666666665443211 111111112234456666666665543
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.6e-08 Score=96.16 Aligned_cols=246 Identities=13% Similarity=0.087 Sum_probs=152.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC--C----HHHHHHHH
Q 035503 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP--S----TTTITCAL 510 (788)
Q Consensus 437 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~----~~~~~~ll 510 (788)
..+.++..+..+++.|++.+....+.. -+..-++....+|...|.+.+.........+.|... + ...+..+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555556666666666666654442 244444555556666666655555555444433110 1 11222233
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChh-hHHHHHHHHHhCCCHHH
Q 035503 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELP-VYNAMISGYAMHGLAVE 587 (788)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~ 587 (788)
.++...++++.+...+.+.+...-. -+...+....+++....+...- +... --..-+..+.+.|++..
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt---------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRT---------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcC---------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 4566678888999999887664432 2233444555666665553332 2221 12233677889999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 588 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
|+..|.+++... +-|...|.....+|.+.|.+..|+.-.+..+ .+.|+ ...|..=+.++.-..++++|++.|++.
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i---eL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCI---ELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999875 4577889999999999999999999888776 44565 556666677777788999999999888
Q ss_pred -CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 035503 667 -PCDPDAHIIGSLLSTCVKS-NETELAEYISEH 697 (788)
Q Consensus 667 -~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 697 (788)
...|+..-+...+.-|... ...+..+++.++
T Consensus 453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 4566655444444444442 223334445554
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.1e-06 Score=89.01 Aligned_cols=124 Identities=9% Similarity=-0.051 Sum_probs=71.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhc
Q 035503 49 HQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK 128 (788)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (788)
+-++.+..+|++++|...-.+++..+ +-+.+.+..-+-++-+.+.+++|..+-+.-... ..+......-..+..+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~----~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL----LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh----hhcchhhHHHHHHHHH
Confidence 34555666777788877777777654 444566777777777777777776443322110 1111111111222336
Q ss_pred cCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCC
Q 035503 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177 (788)
Q Consensus 129 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (788)
.+..|+|...++.....+......-.+.+.+.|++++|+.+|+.+.+.+
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 6777777777775544444455555556667777777777777766554
No 89
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=6.6e-11 Score=81.49 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=47.7
Q ss_pred CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 035503 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295 (788)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 295 (788)
||+++||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 90
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=3.3e-11 Score=82.98 Aligned_cols=50 Identities=26% Similarity=0.501 Sum_probs=47.4
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcc
Q 035503 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194 (788)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 194 (788)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=8.4e-09 Score=106.72 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC----------CChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC--
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS----------KELP-VYNAMISGYAMHGLAVEALALFKNLQQK---GIDPD-- 603 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~-- 603 (788)
+++.|+.+|.+.|++++|...+++..+ +.+. .++.++..++..+++++|..++++..+. -+.++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 445555566666666665555543221 1222 3556777788888888888888775432 12222
Q ss_pred --HhHHHHHHHHhhccCcHHHHHHHHHhcHhhc-----CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--------C
Q 035503 604 --SITFTNILNACSHAGLVNEGLELFVGMFSDH-----QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM--------P 667 (788)
Q Consensus 604 --~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~ 667 (788)
..++..|...|.+.|++++|.++|++++... +..+. ...++.|+..|.+.++..+|.++|.+. +
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 3567888888999999999999999887643 11222 456678888898999988888888776 2
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 668 CDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 668 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
..|+. .++.+|+..|...|+++.|+++.++++.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34554 4789999999999999999999998874
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=1.2e-08 Score=90.63 Aligned_cols=197 Identities=14% Similarity=0.061 Sum_probs=119.3
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHG 583 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g 583 (788)
..+.-.|...|+...|..-++++++.+| .+..++..++..|.+.|+.+.|.+.|+...+ .+-...|....-+|.+|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 3344456666666666666666666666 5556666666666666666666666664433 33345666666667777
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHH
Q 035503 584 LAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 584 ~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
++++|...|++......-| -..+|..+.-+..+.|+.+.|.++|++.++ +.|+ +.....+.....+.|++-.|..
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHH
Confidence 7777777777665532222 235666666666667777777777776653 3344 4455566666667777777776
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 662 VILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 662 ~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
+++.. ...+......-.++.-...||.+.+-+.=.++....|.+..
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 66665 22345555555555556666666666666666666666443
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=2.4e-07 Score=86.86 Aligned_cols=310 Identities=14% Similarity=0.129 Sum_probs=184.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHH---HHHHcCChhHHHHHHHHHHHcCCCCchhHH-HHHHHHHHh
Q 035503 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA---AYADLGRSGEASRLFYQMQLEGISPNIISW-NSVILGFLR 445 (788)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~ 445 (788)
...+...+...|++..|+..|......|+..|.++.+ .|...|+...|+.-+.+.++. +||-..- ..-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 3456667777888888888888888877777766653 677788888888888877765 6664322 223345778
Q ss_pred cCCHHHHHHHHHHhhhCCCCCC--hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHH
Q 035503 446 NGQMNEAKDMFLQMQSLGVQPN--LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523 (788)
Q Consensus 446 ~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 523 (788)
.|.+++|..-|+.+.+.....+ ...+..++ ..+++ ..+...+..+...|+...++
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~--------------~~~e~---------~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLA--------------LIQEH---------WVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHH--------------hHHHH---------HHHHHHHHHHhcCCchhhHH
Confidence 8888888888888876522111 11111110 00000 11122223344455556666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhh---CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 035503 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI---SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600 (788)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 600 (788)
.....+++..+ .+...+..-+.+|...|+...|+.-++. +...+..+.--+-..+...|+.+.++...++-+. +
T Consensus 176 ~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--l 252 (504)
T KOG0624|consen 176 EMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--L 252 (504)
T ss_pred HHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--c
Confidence 66666666555 5555666666666666666666555443 2334444444555555566666666665555444 3
Q ss_pred CCCHhHH----H-------HHH--HHhhccCcHHHHHHHHHhcHhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHH
Q 035503 601 DPDSITF----T-------NIL--NACSHAGLVNEGLELFVGMFSDHQVKPS-----MEHFGCVVNLLSRCGNLDEALRV 662 (788)
Q Consensus 601 ~p~~~~~----~-------~ll--~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~ 662 (788)
.||.... . .|- ......+++.++++..+..++ ..|. ...+..+-.++...|++.+|+..
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 4443211 1 111 123345666677777766653 3344 22334556667778888888887
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 035503 663 ILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 663 ~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
..++ ...|+ +.++..-+.+|.....++.|+.-|+++.+.+|++..+-.
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 7776 44555 567777777888888888888888888888888755543
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.3e-09 Score=109.46 Aligned_cols=220 Identities=16% Similarity=0.095 Sum_probs=151.9
Q ss_pred hccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHH
Q 035503 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALA 590 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~ 590 (788)
.+.|++.+|.-.|+.+++.+| .+..+|..|+......++-..|+..+.+..+ .+..+...|.-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 344455555555555555555 4555555555555555555555555554443 233445555556666666666666
Q ss_pred HHHHHHHcCCC--------CCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 035503 591 LFKNLQQKGID--------PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662 (788)
Q Consensus 591 ~~~~m~~~~~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 662 (788)
.++.-+...++ ++...-.. ..+..........++|-++....+..+|++++..|+-+|.-.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 66665443210 00000000 112223334455677777766666668899999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 663 ILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 663 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|+.+ ..+| |...||.|+..+....+.++|+..|.+++++.|....+.++|+-.|...|.+.||.+.|=.++...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9998 4444 567899999999999999999999999999999999999999999999999999999988776543
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=2.5e-07 Score=86.75 Aligned_cols=288 Identities=12% Similarity=0.120 Sum_probs=188.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHH---HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHH-HHHHHhh
Q 035503 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL---ISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT-CALSACT 514 (788)
Q Consensus 439 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~ 514 (788)
+...+...|++.+|+..|....+- |+..|.++ ...|...|+..-|+.-+.+.++ .+||...-. .-...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhh
Confidence 344455555566666666555544 44444333 2345555666666665665555 455543221 1222345
Q ss_pred ccCchHHHHHHHHHHHHcCCCCCh--h------------HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPT--P------------IVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMIS 577 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~--~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 577 (788)
+.|.++.|..=|+.+++..+.... . .....+..+...|+...|+.....+.+ .|...+..-..
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 556666666666666655542211 1 111223344566888888888876654 56667778889
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc----hHHHH---H---
Q 035503 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME----HFGCV---V--- 647 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l---~--- 647 (788)
+|...|++..|+.-++...... ..+..++.-+-..+...|+.+.++...++.+ .+.||.. .|..| .
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999888876643 3345566666667888999999988888876 6778743 22222 1
Q ss_pred ---HHHhhcCChHHHHHHHHhC-CCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 648 ---NLLSRCGNLDEALRVILTM-PCDPDAH-----IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 648 ---~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
....+.+++-++++-.++. ..+|... .+..+-..+...+++-+|++...++++++|+|..++...+.+|.-
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1234566777777666665 3445421 222333445677999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHCC
Q 035503 719 SGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 719 ~g~~~~A~~~~~~~~~~~ 736 (788)
...|++|+.-|++..+..
T Consensus 354 dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELN 371 (504)
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 999999999999987755
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.2e-05 Score=84.43 Aligned_cols=547 Identities=13% Similarity=0.081 Sum_probs=278.2
Q ss_pred chhHhhHHHH--HHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCC--------C-CCCcc
Q 035503 115 NEYVETKLVV--FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG--------V-SPDNF 183 (788)
Q Consensus 115 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~-~~~~~ 183 (788)
|..+..++++ .|..-|+.|.|.+..+-+. +...|..|...|.+..+.+-|.-.+-.|.... . .|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 3333444443 3567799999988877665 34568899999998888888877776664311 1 121 2
Q ss_pred cHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCC-CcchHHHHHHHHHHCC
Q 035503 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNG 262 (788)
Q Consensus 184 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g 262 (788)
+=.-+.-.....|.+++|+.++++-.+.. .|-..|...|.+++|.++-+.-..- =..+|..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 21122222346788888888888876643 3445677788999998887643211 1125555556666778
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHH
Q 035503 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342 (788)
Q Consensus 263 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 342 (788)
+.+.|++.|++.... --. ...++. .++...++..+. ..|...|.-....+-..|+++.|+.+|.
T Consensus 873 Di~~AleyyEK~~~h----afe-v~rmL~-----e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVH----AFE-VFRMLK-----EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred cHHHHHHHHHhcCCh----HHH-HHHHHH-----hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 888888888774221 111 111111 111111111111 2234455555666667788888888887
Q ss_pred hcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHH
Q 035503 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422 (788)
Q Consensus 343 ~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (788)
... -|.++++..|-.|++++|-++-++- .|......+.+.|-..|++.+|..+|.
T Consensus 937 ~A~-----------------------D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 937 SAK-----------------------DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred Hhh-----------------------hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 754 3455666667777777777766543 355666677777777788888877777
Q ss_pred HHHHcC--CC--CchhHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHH---
Q 035503 423 QMQLEG--IS--PNIISWNSVILGFLRNG--QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE--- 493 (788)
Q Consensus 423 ~m~~~~--~~--~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--- 493 (788)
++.... ++ -....-..|.+.+.-.| +.-.|-++|++.-- -...-+..|-+.|.+.+|+++-=+
T Consensus 992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQ 1063 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQ 1063 (1416)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcc
Confidence 654320 00 00000011222222222 23334445544311 122234556677777776654211
Q ss_pred -----HHhCCC--CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 035503 494 -----MLETGI--KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566 (788)
Q Consensus 494 -----m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (788)
++..++ ..|+..+....+-++...++++|..++....+.. .- -.+|+..++.-..++-+.|..
T Consensus 1064 f~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~---------~A-lqlC~~~nv~vtee~aE~mTp 1133 (1416)
T KOG3617|consen 1064 FSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFS---------GA-LQLCKNRNVRVTEEFAELMTP 1133 (1416)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------HH-HHHHhcCCCchhHHHHHhcCc
Confidence 122222 2344555555555566666666665554443311 00 011222222222222222221
Q ss_pred -C----Ch----hhHHHHHHHHHhCCCHHHHHHHHHHH----------HHcCCCCCHhHH----------HHHHHHhhcc
Q 035503 567 -K----EL----PVYNAMISGYAMHGLAVEALALFKNL----------QQKGIDPDSITF----------TNILNACSHA 617 (788)
Q Consensus 567 -~----~~----~~~~~l~~~~~~~g~~~~A~~~~~~m----------~~~~~~p~~~~~----------~~ll~~~~~~ 617 (788)
+ +. .....+...|.++|.+..|-+-|.+. ++.| ..+..+| .++..-|.+.
T Consensus 1134 ~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSG-dt~KI~FFAn~sRqkEiYImAANyLQt 1212 (1416)
T KOG3617|consen 1134 TKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSG-DTQKIRFFANTSRQKEIYIMAANYLQT 1212 (1416)
T ss_pred CcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcC-CcceEEEEeeccccceeeeehhhhhhh
Confidence 1 11 24556677777777777776555442 1122 0000000 0111112222
Q ss_pred CcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh---------------cCChHHHHHHHHhCCCCCCHH-HHHHH---
Q 035503 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR---------------CGNLDEALRVILTMPCDPDAH-IIGSL--- 678 (788)
Q Consensus 618 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---------------~g~~~~A~~~~~~~~~~p~~~-~~~~l--- 678 (788)
=+|.+--++.+.+. ++-.....+..|+..|.. .|-+++|.+.+.++..+.+.. .+++|
T Consensus 1213 lDWq~~pq~mK~I~---tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~ 1289 (1416)
T KOG3617|consen 1213 LDWQDNPQTMKDIE---TFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQED 1289 (1416)
T ss_pred cccccChHHHhhhH---hhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 22222222222221 111222233333333322 123444444444443332322 22222
Q ss_pred -------HHHHHh-cCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 679 -------LSTCVK-SNETELAEYISEHLLQLEPDN------PGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 679 -------~~~~~~-~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
++.... ..|..+.++-.+.+++ .|+. ...|-.|+..|....+|..|-+.++.|..+-+
T Consensus 1290 ~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1290 LAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 222111 1355666666665554 3432 35678889999999999999999999987654
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=1.2e-06 Score=91.01 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC---------CCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEP---------DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
....++...|+.+.|...++.+....- .........+.++...|++++|.+.+...+..+
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 445556667777777777776654221 134556777888999999999999999887765
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.97 E-value=1.2e-07 Score=99.77 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=105.8
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc-------------CCCCCc--chHHHHHHHHhh
Q 035503 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH-------------QVKPSM--EHFGCVVNLLSR 652 (788)
Q Consensus 588 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------------~~~p~~--~~~~~l~~~~~~ 652 (788)
+..++..+..+|+++ +|..+-..|....+.+-..+++....... .-+|+. .++..++..|..
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 455566667777543 33334334554444444444444433221 112332 233467888889
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHH
Q 035503 653 CGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 730 (788)
.|+.++|+++++++ ...|+ +..+..-++.+...|++++|...++.+.++|+.|.-.....+..+.+.|+.++|.+++.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999987 45566 45788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCC
Q 035503 731 IMKEKGL 737 (788)
Q Consensus 731 ~~~~~~~ 737 (788)
.....+.
T Consensus 287 ~Ftr~~~ 293 (517)
T PF12569_consen 287 LFTREDV 293 (517)
T ss_pred hhcCCCC
Confidence 8866554
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=1.9e-06 Score=101.85 Aligned_cols=368 Identities=8% Similarity=-0.093 Sum_probs=221.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcccCChhH--HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 035503 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVL--WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446 (788)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 446 (788)
........+...|++.+|..........+... ...........|+++.+..++..+.......+..........+...
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 34445566777788887777666654332211 1122233455677777766666542211112222233444556678
Q ss_pred CCHHHHHHHHHHhhhCC--C----CCC--hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCH----HHHHHHHHHhh
Q 035503 447 GQMNEAKDMFLQMQSLG--V----QPN--LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST----TTITCALSACT 514 (788)
Q Consensus 447 g~~~~A~~~~~~~~~~g--~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~ 514 (788)
|+++++...+......- . .+. ......+...+...|++++|...+++....-...+. .....+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 88898888888764320 0 111 111222334556788999999988887753111111 23344455567
Q ss_pred ccCchHHHHHHHHHHHHcCCC-----CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------CC----hhhHHHHHHH
Q 035503 515 DVASLRNGRAIHGYLIRHDLC-----LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-------KE----LPVYNAMISG 578 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~ 578 (788)
..|+++.|...+..+...... ........++..+...|++++|...+++... ++ ...+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 788999998888887753211 1123455667788889999999888764322 11 1234455667
Q ss_pred HHhCCCHHHHHHHHHHHHHcC--CCCC--HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-----HHHHH
Q 035503 579 YAMHGLAVEALALFKNLQQKG--IDPD--SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-----CVVNL 649 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~--~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~l~~~ 649 (788)
+...|++++|...+++..... ..+. ...+..+...+...|++++|...+.++............+. .....
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 777899999998888865531 1121 23344455567788999999888887753211111111110 11234
Q ss_pred HhhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHH
Q 035503 650 LSRCGNLDEALRVILTMPCD--PDA----HIIGSLLSTCVKSNETELAEYISEHLLQLEPD------NPGNYVALSNAYA 717 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~ 717 (788)
+...|+.++|..++...... ... ..+..+..++...|++++|...++++++.... ...++..++.+|.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 45678999999888776321 111 12345667788889999999999998875322 2346778888999
Q ss_pred hCCCcHHHHHHHHHHHHCC
Q 035503 718 ASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~~~~ 736 (788)
+.|+.++|...+.+..+..
T Consensus 743 ~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887765
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=1.3e-07 Score=92.54 Aligned_cols=225 Identities=14% Similarity=0.117 Sum_probs=120.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC-LPTPIVTSLVDMYA 549 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 549 (788)
...+.+++...|+++.++ .++.... .|....+..+...+....+-+.+..-++..+..... .+..+....+.++.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 334445555555544322 3332222 444444443433333323333333333222222221 22233334445666
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhh----ccCcHHHHHH
Q 035503 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS----HAGLVNEGLE 625 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~g~~~~A~~ 625 (788)
..|++++|++++... .+.......+.+|.+.+|++.|.+.++.|.+. ..|.. ...+..++. -.+.+.+|..
T Consensus 114 ~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y 188 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQDAFY 188 (290)
T ss_dssp CCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHH
T ss_pred HcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHHHHHH
Confidence 778888888877765 45556666778888888888888888888763 34433 333333322 2235778888
Q ss_pred HHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC
Q 035503 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNET-ELAEYISEHLLQLE 702 (788)
Q Consensus 626 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 702 (788)
+|+++.. ...+++.+.+.++.+....|++++|.+.+.++ ... .++.++-+++......|+. +.+.+..+++...+
T Consensus 189 ~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 189 IFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 8888754 33456666677777777777777777777665 222 2344555565555555655 55666777766677
Q ss_pred CCCC
Q 035503 703 PDNP 706 (788)
Q Consensus 703 p~~~ 706 (788)
|+++
T Consensus 267 p~h~ 270 (290)
T PF04733_consen 267 PNHP 270 (290)
T ss_dssp TTSH
T ss_pred CCCh
Confidence 7644
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=6.1e-06 Score=85.81 Aligned_cols=298 Identities=9% Similarity=-0.013 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCchhH-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGI-SPNIIS-WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 476 (788)
..|..+...+...|+.+.+...+........ .++... .......+...|++++|...+++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3445555555556666666555555444311 122211 1122334556777777877777775541 223333332 22
Q ss_pred HHHh----CCCchHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc
Q 035503 477 GLTQ----NSCGNEAILFFQEMLETGIKPST-TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551 (788)
Q Consensus 477 ~~~~----~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 551 (788)
.+.. .+....+.+.+... ....|+. .....+...+...|++++|...+++.++..+ .+...+..++.+|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence 2222 34444444444431 1123332 3334455567778888888888888888776 5566777888888888
Q ss_pred CCHHHHHHHHhhCCCC-----Ch--hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhHH-H--HHHHHhhccCcH
Q 035503 552 GNIHQAKRVFDISPSK-----EL--PVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPDSITF-T--NILNACSHAGLV 620 (788)
Q Consensus 552 g~~~~A~~~~~~~~~~-----~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~ll~~~~~~g~~ 620 (788)
|++++|...++...+. +. ..|..+...+...|++++|+.++++...... .+..... . .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 8888888888765541 11 2345677888889999999999988754322 1111111 1 223333344433
Q ss_pred HHHHHHHHhcHhh--cCCCCCcchHH--HHHHHHhhcCChHHHHHHHHhCCC--CC---C------HHHHHHHHHHHHhc
Q 035503 621 NEGLELFVGMFSD--HQVKPSMEHFG--CVVNLLSRCGNLDEALRVILTMPC--DP---D------AHIIGSLLSTCVKS 685 (788)
Q Consensus 621 ~~A~~~~~~~~~~--~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~--~p---~------~~~~~~l~~~~~~~ 685 (788)
+.+.++ +.+... .........+. ..+.++...|+.++|...++.+.. .. . .........++...
T Consensus 242 ~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 332222 111110 01111111122 566777888999999998877621 11 1 11222233446788
Q ss_pred CCHHHHHHHHHHHHhcC
Q 035503 686 NETELAEYISEHLLQLE 702 (788)
Q Consensus 686 g~~~~A~~~~~~~~~~~ 702 (788)
|+.+.|...+..++..-
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999888644
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=4.5e-06 Score=77.03 Aligned_cols=320 Identities=11% Similarity=0.046 Sum_probs=192.3
Q ss_pred hhHHHHHhHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 035503 220 ASSLIDMYGKCGDLEEARKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296 (788)
Q Consensus 220 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 296 (788)
+++.+..+.+..+++.|++++....++ +....+.+..+|....++..|-+.++++-.. .|...-|..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl-------- 82 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRL-------- 82 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH--------
Confidence 344555556666677777766655433 3445666666777777777777777776543 232222211
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHH
Q 035503 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376 (788)
Q Consensus 297 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~ 376 (788)
--...+.+.+.+.+|+++...|.+.+. ..+. ....-...
T Consensus 83 --------------------------Y~AQSLY~A~i~ADALrV~~~~~D~~~-L~~~--------------~lqLqaAI 121 (459)
T KOG4340|consen 83 --------------------------YQAQSLYKACIYADALRVAFLLLDNPA-LHSR--------------VLQLQAAI 121 (459)
T ss_pred --------------------------HHHHHHHHhcccHHHHHHHHHhcCCHH-HHHH--------------HHHHHHHH
Confidence 112233455566666666666655311 0000 00111112
Q ss_pred HhhcCChHHHHHHHHhcc-cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 035503 377 YAKCERIDNAKQVFNSII-LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455 (788)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 455 (788)
.-..+++..+..+.++.. +.+..+.+.......+.|++++|.+-|+...+.+--.....|+.-+ +..+.|+++.|++.
T Consensus 122 kYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~ 200 (459)
T KOG4340|consen 122 KYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKH 200 (459)
T ss_pred hcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHH
Confidence 223466677777777776 3556666666677778899999999998888764333455666444 45567888899988
Q ss_pred HHHhhhCCCCCCh----------------------------hhHHHHHHHHHhCCCchHHHHHHHHHHhC-CCCCCHHHH
Q 035503 456 FLQMQSLGVQPNL----------------------------ITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTI 506 (788)
Q Consensus 456 ~~~~~~~g~~~~~----------------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~ 506 (788)
..++.++|++..+ ..+|.-...+.+.|+++.|.+.+-.|.-+ .-..|+.|+
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 8888777664211 11222233456788999999988888632 235577787
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh-----hhHHHHHHHHHh
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL-----PVYNAMISGYAM 581 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~ 581 (788)
..+.-. -..+++..+.+-+..++...| .+..++..++-.||+..-++.|-.++.+-..... ..|+ |++++..
T Consensus 281 HN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt 357 (459)
T KOG4340|consen 281 HNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALIT 357 (459)
T ss_pred hHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHh
Confidence 765432 224456667777778888887 6677888888999999999999998876554322 2222 3333332
Q ss_pred -CCCHHHHHHHHHH
Q 035503 582 -HGLAVEALALFKN 594 (788)
Q Consensus 582 -~g~~~~A~~~~~~ 594 (788)
.-..++|.+-++.
T Consensus 358 ~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDG 371 (459)
T ss_pred CCCCHHHHHHHHHH
Confidence 3455555554444
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=1.7e-07 Score=90.74 Aligned_cols=181 Identities=15% Similarity=0.088 Sum_probs=125.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-h---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh----
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KE-L---PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI---- 605 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---- 605 (788)
.....+..++..+...|++++|...|+.+.. |+ . .++..+..++...|++++|+..++++.+.. |+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 4556777788888888888888888886654 22 2 356777888888888888888888887753 3221
Q ss_pred HHHHHHHHhhcc--------CcHHHHHHHHHhcHhhcCCCCCcchH-HHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHH
Q 035503 606 TFTNILNACSHA--------GLVNEGLELFVGMFSDHQVKPSMEHF-GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676 (788)
Q Consensus 606 ~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 676 (788)
++..+..++... |++++|.+.|+++... .|+.... ..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444555544 6778888888887643 3443221 111111 1011110 01123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.++..+...|++++|+..++++++..|++ +..+..++.+|.+.|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56677889999999999999999998875 4689999999999999999999999887654
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=2.7e-06 Score=78.47 Aligned_cols=419 Identities=12% Similarity=0.017 Sum_probs=224.6
Q ss_pred CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHH
Q 035503 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357 (788)
Q Consensus 278 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 357 (788)
|+....--+.+++..+.+..++..+.+++..-.+.. +.+....+.|..+|....++..|...++++.+.-+
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-------- 75 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-------- 75 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--------
Confidence 333334445556666666667777777666555543 22444556667777777777777777777654322
Q ss_pred HHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccC-ChhHHHHHHH--HHHHcCChhHHHHHHHHHHHcCCCCchh
Q 035503 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-DVVLWNTLLA--AYADLGRSGEASRLFYQMQLEGISPNII 434 (788)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 434 (788)
........-...+-+.+.+..|+++...|... +...-..-+. .....+++..+..++++.... .+..
T Consensus 76 -------~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad 145 (459)
T KOG4340|consen 76 -------ELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEAD 145 (459)
T ss_pred -------HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccc
Confidence 11112223345555667777777777666543 2221111122 223345666666666554321 2344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHH----HHHH
Q 035503 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI----TCAL 510 (788)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~ll 510 (788)
+.+.......+.|++++|.+-|+...+.+--.....|+.-+ +..+.|+++.|+++..+++++|++..+..- .-.+
T Consensus 146 ~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi 224 (459)
T KOG4340|consen 146 GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI 224 (459)
T ss_pred hhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence 44445555667788888888887775543333345555433 445567778888888888777765433210 0000
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhCCCH
Q 035503 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-----KELPVYNAMISGYAMHGLA 585 (788)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~ 585 (788)
++ ...|+. ..++.. .-...++.-...+.+.|+++.|.+.+-.|+. .|+++...+.-.- ..+++
T Consensus 225 Dv-rsvgNt---~~lh~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p 292 (459)
T KOG4340|consen 225 DV-RSVGNT---LVLHQS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARP 292 (459)
T ss_pred ch-hcccch---HHHHHH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCc
Confidence 00 000110 000000 0112344445567788999999999988875 4677776654332 23445
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCC-CCcchHHHHHHHHh-hcCChHHHHHHH
Q 035503 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK-PSMEHFGCVVNLLS-RCGNLDEALRVI 663 (788)
Q Consensus 586 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~ 663 (788)
.+..+-+.-+...+. -...||..++-.||+..-++-|..++-+-... -.. .+.-.| .|.+++. -.-..++|.+-+
T Consensus 293 ~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly-~LLdaLIt~qT~pEea~KKL 369 (459)
T KOG4340|consen 293 TEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLY-DLLDALITCQTAPEEAFKKL 369 (459)
T ss_pred cccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHH-HHHHHHHhCCCCHHHHHHHH
Confidence 555555555555432 24678888999999999998888777533100 000 011112 3444443 344566776665
Q ss_pred HhCCCCCCHHHHHHHHHHH-HhcCC----HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 664 LTMPCDPDAHIIGSLLSTC-VKSNE----TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 664 ~~~~~~p~~~~~~~l~~~~-~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
+.+...-........+..- .++.+ ...|++-|+..+++. -.+....+++|++..++.-+.+.|+.-.+
T Consensus 370 ~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 370 DGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 5542110111111111111 11222 223444455555533 22455678899999999999999987655
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=9e-08 Score=93.68 Aligned_cols=246 Identities=9% Similarity=0.017 Sum_probs=163.9
Q ss_pred HHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 035503 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555 (788)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 555 (788)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. ..+.... .|.......++..+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455677777775555 222211222345556677888888766433 3333333 466666666766665556677
Q ss_pred HHHHHHhhCCC-CC---hhhHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 556 QAKRVFDISPS-KE---LPVYN-AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 556 ~A~~~~~~~~~-~~---~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
.++.-++.... .. ..++. .....+...|++++|++++++. .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777755443 21 12232 2334566789999999998762 35566666778899999999999999999
Q ss_pred HhhcCCCCCcchHHHHHHHH--hhc--CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 631 FSDHQVKPSMEHFGCVVNLL--SRC--GNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 631 ~~~~~~~p~~~~~~~l~~~~--~~~--g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
. .+..|. +...++.++ ... ..+.+|..+|+++. ..+++.+.+.++.++...|++++|+..++++++.+|+
T Consensus 158 ~---~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 Q---QIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp H---CCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred H---hcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 5 444553 333333333 223 36999999999993 3467788888999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhCCCc-HHHHHHHHHHHHCC
Q 035503 705 NPGNYVALSNAYAASGRW-NEVSQVRDIMKEKG 736 (788)
Q Consensus 705 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 736 (788)
++.+..+++-+....|+. +.+.+++..+....
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 999999999999999998 66778888776543
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=2.1e-07 Score=102.65 Aligned_cols=210 Identities=14% Similarity=0.120 Sum_probs=173.5
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 035503 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--------KELPVYNAMISGYAMHGLAVEALALFKNL 595 (788)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 595 (788)
+=|++++...| .+...|...+......++.++|.+++++... .-...|.++++.....|.-+...++|+++
T Consensus 1445 eDferlvrssP-NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSSP-NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcCC-CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 34555666666 6677788888888899999999999987654 12247888888888889888999999998
Q ss_pred HHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---
Q 035503 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD--- 671 (788)
Q Consensus 596 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--- 671 (788)
.+. ......|..|...|.+.+..++|.++++.|.+.++ .....|...++.+.+..+-++|.+++.++ ..-|.
T Consensus 1524 cqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1524 CQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 774 23345678888899999999999999999998766 67788999999999999999999999887 23333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
.....-.+..-.+.||.++++.+|+..+.-.|.-.+.|..+++.-.+.|+.+.++.+|+++...++.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 3345556666789999999999999999999999999999999999999999999999999988764
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=0.00042 Score=82.10 Aligned_cols=367 Identities=9% Similarity=-0.060 Sum_probs=231.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc----cC
Q 035503 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII----LR 396 (788)
Q Consensus 321 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~ 396 (788)
+......+...|++.+|.............. . ........+...|+++.+...++.+. ..
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~~~~~--~--------------ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~ 407 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDAQLLR--D--------------ILLQHGWSLFNQGELSLLEECLNALPWEVLLE 407 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH--H--------------HHHHhHHHHHhcCChHHHHHHHHhCCHHHHhc
Confidence 3344556777888887777666654332110 1 11222334455677887777777663 12
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCC------CCc--hhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-
Q 035503 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI------SPN--IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN- 467 (788)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~------~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~- 467 (788)
+..........+...|+++++...+..+...-- .+. ......+...+...|++++|...++.....-...+
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY 487 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence 333334445566778999999999988765311 111 11222333456789999999999998755311112
Q ss_pred ---hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCC---CCC--HHHHHHHHHHhhccCchHHHHHHHHHHHHc----CCC
Q 035503 468 ---LITWTTLISGLTQNSCGNEAILFFQEMLETGI---KPS--TTTITCALSACTDVASLRNGRAIHGYLIRH----DLC 535 (788)
Q Consensus 468 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~ 535 (788)
....+.+...+...|++++|...+.+.....- .+. ..++..+...+...|+++.|...+++.... +..
T Consensus 488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 567 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE 567 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 12345566677889999999999988874211 111 234445566778899999999998887663 211
Q ss_pred C---ChhHHHHHHHHHHHcCCHHHHHHHHhhCCC------C--ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC
Q 035503 536 L---PTPIVTSLVDMYAKCGNIHQAKRVFDISPS------K--ELPVYNAMISGYAMHGLAVEALALFKNLQQKG--IDP 602 (788)
Q Consensus 536 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p 602 (788)
. ....+..++..+...|++++|...++.... + ....+..+...+...|++++|...+++..... ...
T Consensus 568 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~ 647 (903)
T PRK04841 568 QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRY 647 (903)
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence 1 123355667778888999999998876532 1 12345557778889999999999998875521 111
Q ss_pred CHh--HH--HHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc----hHHHHHHHHhhcCChHHHHHHHHhCC-------
Q 035503 603 DSI--TF--TNILNACSHAGLVNEGLELFVGMFSDHQVKPSME----HFGCVVNLLSRCGNLDEALRVILTMP------- 667 (788)
Q Consensus 603 ~~~--~~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~------- 667 (788)
... .. ...+..+...|+.+.|..++...... . ..... ....++.++...|+.++|...++++.
T Consensus 648 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 648 HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR 725 (903)
T ss_pred cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 110 11 11123345588999999988765421 1 11111 13467778889999999999988871
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 668 CDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 668 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
...+ ..+...++.++...|+.++|...+.+++++....
T Consensus 726 ~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 726 LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 1111 2356667778899999999999999999987553
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.81 E-value=2.2e-07 Score=85.76 Aligned_cols=149 Identities=10% Similarity=0.117 Sum_probs=112.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCC
Q 035503 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655 (788)
Q Consensus 576 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 655 (788)
+..|...|+++.+....+++.. |. ..+...++.++++..++..++. -+.+...|..++..|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3457777887776544433221 11 0122366677788778777642 23447788899999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHH
Q 035503 656 LDEALRVILTM-PCDP-DAHIIGSLLSTC-VKSNE--TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 656 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 730 (788)
+++|...++++ ...| +...+..++.++ ...|+ .++|+.+++++++.+|+++.++..++..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999888 3344 566788888764 67676 5999999999999999999999999999999999999999999
Q ss_pred HHHHCCCc
Q 035503 731 IMKEKGLR 738 (788)
Q Consensus 731 ~~~~~~~~ 738 (788)
++++....
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 99887653
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=7.1e-08 Score=84.13 Aligned_cols=94 Identities=12% Similarity=-0.047 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
+..++..+...|++++|.+.|+.+ ... .+...|..++.++...|++++|+..|+++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444566666666666666666665 222 345566677777777777777777777777777777777777777777777
Q ss_pred CcHHHHHHHHHHHHCC
Q 035503 721 RWNEVSQVRDIMKEKG 736 (788)
Q Consensus 721 ~~~~A~~~~~~~~~~~ 736 (788)
++++|...++..++..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777777777766654
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.76 E-value=1.7e-07 Score=81.77 Aligned_cols=123 Identities=11% Similarity=-0.009 Sum_probs=99.1
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-
Q 035503 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM- 666 (788)
Q Consensus 589 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 666 (788)
..+|++.++. .|+. +..+..++...|++++|...|+.+. .+.|+ ...+..++.++.+.|++++|...|+++
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4566666553 4553 4456677888999999999999886 44554 677778999999999999999999888
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 667 PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 667 ~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
.. +.+...+..++.++...|++++|+..++++++..|+++..+...+.+...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33 34667899999999999999999999999999999999999888877544
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=5.9e-07 Score=98.33 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=97.8
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHH
Q 035503 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM-EHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIG 676 (788)
Q Consensus 600 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~ 676 (788)
...+...+..|.....+.|.+++|..+++.+. .+.|+. .....++..+.+.+++++|+..+++. ...|+. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 44456777777777778888888888888776 556764 44457777788888888888887777 445554 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.++.++.+.|++++|+.+|++++..+|+++.++..++.++.+.|+.++|...|++..+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666777788888888888888877888888888888888888888888888777554
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=5.8e-07 Score=90.85 Aligned_cols=243 Identities=15% Similarity=0.086 Sum_probs=139.5
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (788)
.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+.++.+| .+..+...|+-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHHH
Confidence 34444444444444444321 22233444444444444444444444444444444 44445555555555555555555
Q ss_pred HHHhhCCCCC-hhhHHHHH---------HHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 559 RVFDISPSKE-LPVYNAMI---------SGYAMHGLAVEALALFKNLQ-QKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 559 ~~~~~~~~~~-~~~~~~l~---------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
..++.-.... ...|.... ..+..........++|-++. ..+..+|+.....|.-.|--.|.+++|+..|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 5554211000 00000000 00111112233444444443 3443366666666766788888899999999
Q ss_pred HhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 628 VGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 628 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+.++ .++|+ ...|+.|+..+....+.+||+..|.++ ...|.- .++.+++-.|...|.+++|.+.|-.++.+.+.
T Consensus 454 ~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 454 EAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 8887 55665 567788888888888999999888887 566664 57888888899999999999998888887655
Q ss_pred C----------CchHHHHHHHHHhCCCcHHHH
Q 035503 705 N----------PGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 705 ~----------~~~~~~l~~~~~~~g~~~~A~ 726 (788)
+ ..+|..|=.++..+++.|-+.
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 1 135666666666666665333
No 113
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=4.4e-06 Score=83.00 Aligned_cols=198 Identities=8% Similarity=0.029 Sum_probs=113.8
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCH--HHHHHH
Q 035503 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG-NIHQAKRVFDISPS---KELPVYNAMISGYAMHGLA--VEALAL 591 (788)
Q Consensus 518 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~--~~A~~~ 591 (788)
..++|.....++++..| .+..+|+....++...| ++++++..++.+.. ++..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 33444444444444444 33334444444444444 34555555554432 3334455444444444442 456666
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhc---CC----hHHHHHHHH
Q 035503 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC---GN----LDEALRVIL 664 (788)
Q Consensus 592 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~~~ 664 (788)
++++++.. +-|..+|.....++...|+++++++.++++++.. .-+...|+....++.+. |+ .++++++..
T Consensus 131 ~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 66666643 2355666666666667777777777777776431 12344454444444333 22 245666664
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 665 TM-PCDP-DAHIIGSLLSTCVKS----NETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 665 ~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
++ ...| +...|+.+...+... ++..+|...+.++++.+|+++.++..|+++|...
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 44 3333 456788888887763 3456788889999888999999999999999864
No 114
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.67 E-value=2.3e-07 Score=78.92 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=87.0
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
.+....++..+...|++++|..+|+-. ..+| +...|..|+..|...|++++|+..|.++..++|++|.++.+++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 556667888889999999999999888 3344 56789999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHCC
Q 035503 718 ASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~~~~ 736 (788)
..|+.+.|.+.|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999987654
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=2.7e-06 Score=88.37 Aligned_cols=219 Identities=12% Similarity=0.069 Sum_probs=167.6
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 035503 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443 (788)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 443 (788)
+|-......+.+.+...|-...|..+|++. ..|..++.+|...|+..+|..+..+..+. +||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 555566778889999999999999999865 57788888999999999999998888774 78888998888888
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHH
Q 035503 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523 (788)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 523 (788)
....-+++|.++++..... .-..+.....+.++++++...|+.-.+.. +....+|-....+..+.++++.+.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 8888888898888876332 11112222334788888888888877642 334567777777777888888888
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 035503 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQK 598 (788)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 598 (788)
+.|...+...| .+...|+.+..+|.+.|+..+|...+.+..+ .+...|...+....+.|.+++|++.+.++...
T Consensus 540 ~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 88888888877 7777888888888888888888888877665 33445667777778888888888888887653
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=1e-06 Score=91.38 Aligned_cols=218 Identities=9% Similarity=0.024 Sum_probs=151.9
Q ss_pred CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHH
Q 035503 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVYNAMIS 577 (788)
Q Consensus 500 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~ 577 (788)
+|-...-..+...+...|-...|..+++++. .+...+.+|+..|+..+|..+..+..+ ++...|..+++
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3333334445555666666777777766544 344467777777777777776654433 55566777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCCh
Q 035503 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNL 656 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 656 (788)
......-+++|.++.+..... .-..+.......++++++.+.|+.-. .+.|- ..+|..++.+..+.+++
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhh
Confidence 776666677777777663221 11112222234678888888887665 33443 56777788888888888
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 657 DEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 657 ~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
..|.+.|... ..+||. ..|+++..+|.+.|+-.+|...++++++-+-++..+|.+..-+..+-|.|++|.+.+.++..
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888888776 566665 47999999999999999999999999988888888888888888999999999998888866
Q ss_pred CC
Q 035503 735 KG 736 (788)
Q Consensus 735 ~~ 736 (788)
..
T Consensus 616 ~~ 617 (777)
T KOG1128|consen 616 LR 617 (777)
T ss_pred hh
Confidence 54
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=4e-06 Score=76.69 Aligned_cols=90 Identities=17% Similarity=0.089 Sum_probs=43.5
Q ss_pred HHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCc
Q 035503 645 CVVNLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 722 (788)
.++....+.|++.+|...+.++ ..++|...|+.++.+|.+.|+++.|...|.+++++.|+++.+..+|+..|.-.|+.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 3444444455555555444444 22334444444444455555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 035503 723 NEVSQVRDIMKE 734 (788)
Q Consensus 723 ~~A~~~~~~~~~ 734 (788)
++|..++.....
T Consensus 185 ~~A~~lll~a~l 196 (257)
T COG5010 185 EDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHHHHHh
Confidence 555554444433
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.55 E-value=4.9e-06 Score=80.57 Aligned_cols=183 Identities=16% Similarity=0.101 Sum_probs=131.3
Q ss_pred CCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-Chh---hH
Q 035503 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP--TPIVTSLVDMYAKCGNIHQAKRVFDISPS--K-ELP---VY 572 (788)
Q Consensus 501 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~ 572 (788)
.....+......+...|+++.|...++.++...+... ...+..++.+|...|++++|+..++.+.+ | +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3456777788889999999999999999999876322 35678899999999999999999997754 2 222 46
Q ss_pred HHHHHHHHhC--------CCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchH
Q 035503 573 NAMISGYAMH--------GLAVEALALFKNLQQKGIDPDSI-TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643 (788)
Q Consensus 573 ~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 643 (788)
..+..++... |++++|++.|+++... .|+.. ....+... +..... . . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~------~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNR------L-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHH------H-H--------HHH
Confidence 6666777655 7899999999999875 45432 22222111 000000 0 0 112
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 644 GCVVNLLSRCGNLDEALRVILTM----PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
..++..|.+.|++++|+..++++ +..| ....+..++.++...|++++|...++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677888999999999998887 2223 3467889999999999999999988888776664
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.53 E-value=1.1e-06 Score=76.66 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=86.7
Q ss_pred HHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 035503 626 LFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702 (788)
Q Consensus 626 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 702 (788)
.+++++ ...|+ ......++..+...|+.++|.+.++.+ .. +.+...|..++..+...|++++|+..++++++.+
T Consensus 5 ~~~~~l---~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLL---GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHH---cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444 44554 345557778888888888888888777 32 3356778888888989999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 703 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888765
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=6.4e-06 Score=76.13 Aligned_cols=153 Identities=11% Similarity=0.113 Sum_probs=114.2
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHH
Q 035503 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624 (788)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 624 (788)
+-.|...|+++.+....+.+..+. ..+...++.++++..+++.+..+ +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777776655443322211 01223667788888888877764 457788888888999999999999
Q ss_pred HHHHhcHhhcCCCCC-cchHHHHHHHH-hhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035503 625 ELFVGMFSDHQVKPS-MEHFGCVVNLL-SRCGN--LDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHL 698 (788)
Q Consensus 625 ~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (788)
..|+++. .+.|+ ...+..++.++ .+.|+ .++|.++++++ ...| +...+..++..+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999887 45565 67777888864 67777 59999999998 3444 5668888999999999999999999999
Q ss_pred HhcCCCCCchH
Q 035503 699 LQLEPDNPGNY 709 (788)
Q Consensus 699 ~~~~p~~~~~~ 709 (788)
++.+|.+..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99988855443
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.53 E-value=1.6e-05 Score=88.56 Aligned_cols=226 Identities=12% Similarity=0.134 Sum_probs=168.9
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHc-CCC---CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-CC-hhhHHHH
Q 035503 502 STTTITCALSACTDVASLRNGRAIHGYLIRH-DLC---LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-KE-LPVYNAM 575 (788)
Q Consensus 502 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~l 575 (788)
+...|...+.-....++.++|+++.++++.. ++. --..+|.+++++...-|.-+...++|+++.+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3456677777777888888888888887763 221 2234677777777777888888999988776 33 3467889
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc---chHHHHHHHHhh
Q 035503 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM---EHFGCVVNLLSR 652 (788)
Q Consensus 576 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~ 652 (788)
...|.+.+.+++|.++|+.|.++ +......|...+..+.+.++.+.|..+++++++. -|.. ......+.+-.+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhh
Confidence 99999999999999999999886 4556778888899999999999999999998853 3553 444566777789
Q ss_pred cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHh-CCCcHHHHH
Q 035503 653 CGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE--PDNPGNYVALSNAYAA-SGRWNEVSQ 727 (788)
Q Consensus 653 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~-~g~~~~A~~ 727 (788)
.|+.+.+..+|+..- .+.-...|+.++..-.++|+.+.++.+|++++.+. |.....++..---|.+ .|+-+.+..
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 999999999998872 22345699999999999999999999999998864 5555555544334444 466544444
Q ss_pred HHHH
Q 035503 728 VRDI 731 (788)
Q Consensus 728 ~~~~ 731 (788)
+-.+
T Consensus 1693 VKar 1696 (1710)
T KOG1070|consen 1693 VKAR 1696 (1710)
T ss_pred HHHH
Confidence 4333
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=7.9e-06 Score=74.83 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=80.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcC
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 654 (788)
+-..+...|+-+....+..+.... ..-|......++......|++.+|+..+.++.. .-++|.+.++.++-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 334444455555555544443221 111223333344555555666666666655542 23344555556666666666
Q ss_pred ChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHH
Q 035503 655 NLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR 729 (788)
Q Consensus 655 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 729 (788)
++++|..-|.++ .. ..++...++++-.+.-.||.+.|+..+..+....+.+..+-.+|+.+....|+.++|.++.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666665555554 22 2233455566666666666666666666666655556666666666666666666665544
No 123
>PLN02789 farnesyltranstransferase
Probab=98.49 E-value=7.6e-05 Score=74.27 Aligned_cols=222 Identities=11% Similarity=0.082 Sum_probs=122.2
Q ss_pred hCCCchHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCH--H
Q 035503 480 QNSCGNEAILFFQEMLETGIKPSTT-TITCALSACTDVA-SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI--H 555 (788)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~ 555 (788)
..++.++|+.+..++++ +.|+.. +|.....++...| .++++...++.+++.++ .+..+|+....++.+.|+. +
T Consensus 49 ~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence 34556666666666665 334432 3333333444444 45666666666666666 4444555555555555542 4
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhcc---Cc----HHHHHH
Q 035503 556 QAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA---GL----VNEGLE 625 (788)
Q Consensus 556 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~----~~~A~~ 625 (788)
+++..++.+.+ .+..+|+....++...|+++++++.++++++.+. -|...|+.....+.+. |. .++++.
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 55666654443 4456677777777777777777777777777652 2444555444444333 22 245566
Q ss_pred HHHhcHhhcCCCCC-cchHHHHHHHHhhc----CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC------------
Q 035503 626 LFVGMFSDHQVKPS-MEHFGCVVNLLSRC----GNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSN------------ 686 (788)
Q Consensus 626 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g------------ 686 (788)
+...++. ..|+ ...+..+..+|... ++..+|.+++.+. ...| .+.....|+..|....
T Consensus 205 y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 205 YTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 6655553 3343 55666666666552 3445677776665 2233 3445666666665421
Q ss_pred ------CHHHHHHHHHHHHhcCCCCCch
Q 035503 687 ------ETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 687 ------~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
..++|..+++.+-+.||--...
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ir~~y 309 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADPMRRNY 309 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCcHHHHH
Confidence 2355666666665555553333
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.49 E-value=3.4e-05 Score=85.45 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
++..+..-|...+++++++.+++.+++.+|+|..+...++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34444445556666666666666666666666666666666655
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=4.3e-05 Score=76.34 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHH-HHHhhccCcHHHHHHHHHhcHhhcCCCCCcc-hHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI-LNACSHAGLVNEGLELFVGMFSDHQVKPSME-HFGCVVN 648 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~ 648 (788)
.+-...-.+...|.+++|+..++.++.. .|+...|..+ ...+...|+.++|.+.++++. ...|+.. ....++.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHH
Confidence 3444444555677888888888887764 4555444443 446778888888888888776 4556643 3347788
Q ss_pred HHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHH
Q 035503 649 LLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 649 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 726 (788)
+|.+.|++.+|+..++.. ..+.|+..|..|..+|...|+..+|... .+..|.-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 888888888888888776 2345667888888888888877766543 466777788888888
Q ss_pred HHHHHHHHCCCccCC
Q 035503 727 QVRDIMKEKGLRKNP 741 (788)
Q Consensus 727 ~~~~~~~~~~~~~~~ 741 (788)
..+....++.-...+
T Consensus 446 ~~l~~A~~~~~~~~~ 460 (484)
T COG4783 446 IFLMRASQQVKLGFP 460 (484)
T ss_pred HHHHHHHHhccCCcH
Confidence 888887776543333
No 126
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.43 E-value=0.0035 Score=67.63 Aligned_cols=221 Identities=12% Similarity=0.080 Sum_probs=132.5
Q ss_pred cCChHHHHHHhccCC--CCCcccHHHHHHHH--HcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHH
Q 035503 129 CDALDVASRLFCRLR--VKNVFSWAAIIGLN--CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204 (788)
Q Consensus 129 ~g~~~~A~~~~~~~~--~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 204 (788)
.+++..|.+..+.+. .||. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...+..+++..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 345555555555542 2332 344455544 5678888888777776655444 666777777777788888888888
Q ss_pred HHHHHHHcCCCchhhhhHHHHHhHhcCChH----HHHHHHhcCCCCCcchHHHHHHHHHHC-CCh---------hHHHHH
Q 035503 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLE----EARKVFDGMIARNVVAWNSMIVGYVQN-GLN---------EEAIRV 270 (788)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~---------~~a~~~ 270 (788)
+++..... |+......+..+|.|.+.+. .|.++++..+++--..|+ +++..... ... .-|.+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHH
Confidence 88877654 44777777778888877664 356666655544333343 44444332 111 234455
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCC
Q 035503 271 FYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348 (788)
Q Consensus 271 ~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 348 (788)
++.+.+.+ -.-+..-...-+..+...|..++|..++..-... -...+...-+.-++.+...+++.+-.++-.++.+++
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 55555543 1112222223334455678889998888544433 334455556777888899999988888777776655
Q ss_pred chhHHH
Q 035503 349 IVTWNL 354 (788)
Q Consensus 349 ~~~~~~ 354 (788)
..-|..
T Consensus 257 ~Ddy~~ 262 (932)
T KOG2053|consen 257 NDDYKI 262 (932)
T ss_pred CcchHH
Confidence 433333
No 127
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=3.3e-07 Score=56.24 Aligned_cols=32 Identities=38% Similarity=0.703 Sum_probs=17.5
Q ss_pred CCCCChhhHHHHHHHHHhCCCchHHHHHHHHH
Q 035503 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494 (788)
Q Consensus 463 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (788)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=7e-05 Score=68.03 Aligned_cols=196 Identities=14% Similarity=0.108 Sum_probs=106.3
Q ss_pred CCchHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHH
Q 035503 482 SCGNEAILFFQEMLE---TG-IKPSTT-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556 (788)
Q Consensus 482 g~~~~A~~~~~~m~~---~~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 556 (788)
.+.++.++++.+++. .| ..++.. .+..++-+....|..+.|..+++.+...-| .+..+...-+..+..
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa------ 98 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEA------ 98 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHH------
Confidence 345566666666553 12 334432 333445555556666666666666555443 333333333333333
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCC
Q 035503 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636 (788)
Q Consensus 557 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 636 (788)
.|++++|+++|+..++.+ +.|.+++.--+...-..|+.-+|++.+....+ .+
T Consensus 99 -------------------------~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F 150 (289)
T KOG3060|consen 99 -------------------------TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KF 150 (289)
T ss_pred -------------------------hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--Hh
Confidence 455555555555555543 23444444444444455555566666655554 33
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSN---ETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 637 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
..|.+.|..+.+.|...|++++|.-.++++ ..+-++..+..+...+...| +.+.|.+.|.+++++.|.+...++-
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 455666666666666666666666666665 22334445555666544443 6677888888888888865555443
Q ss_pred H
Q 035503 712 L 712 (788)
Q Consensus 712 l 712 (788)
+
T Consensus 231 I 231 (289)
T KOG3060|consen 231 I 231 (289)
T ss_pred H
Confidence 3
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.41 E-value=0.0057 Score=66.12 Aligned_cols=158 Identities=10% Similarity=-0.002 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035503 436 WNSVILGFLRNGQMNE---AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512 (788)
Q Consensus 436 ~~~ll~~~~~~g~~~~---A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (788)
.+.|+..+-+.++... |+-+++.-... -+-|..+--.+|..|+-.|-+..|.++|+.+--..+.-|...+. ++..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 4566777777777662 33333332222 01133333456777888888888888888876555555544432 3344
Q ss_pred hhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHh---hCCCCC----hhhHHHHHHHHHhCCCH
Q 035503 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD---ISPSKE----LPVYNAMISGYAMHGLA 585 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~ 585 (788)
+...|.+..+...+....+.--..-...-..++.+ .+.|.+.+..+... ++.... ..+=+..++..+..++.
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 55566777777776666553221112222222333 35555555554442 222111 11234456666677777
Q ss_pred HHHHHHHHHHH
Q 035503 586 VEALALFKNLQ 596 (788)
Q Consensus 586 ~~A~~~~~~m~ 596 (788)
++-...+..|.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 77777766664
No 130
>PF12854 PPR_1: PPR repeat
Probab=98.36 E-value=6.8e-07 Score=54.88 Aligned_cols=34 Identities=29% Similarity=0.765 Sum_probs=28.8
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 035503 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460 (788)
Q Consensus 427 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (788)
.|+.||..||+.||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888899999999999999999888888873
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=3.6e-05 Score=69.83 Aligned_cols=163 Identities=16% Similarity=0.177 Sum_probs=128.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH-HhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN-ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
|..++-+....|+.+.|...++++... + |...-...+-. -+...|++++|+++|+.++.+. +.|..++..=+..+
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHH
Confidence 445555667788999999999998775 3 55443333322 3677899999999999998652 33455565666667
Q ss_pred hhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC---CcHHH
Q 035503 651 SRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG---RWNEV 725 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 725 (788)
...|+.-+|++-+.+. ....|...|.-+...|...|++++|.-++++++-..|.++..+..++++++-.| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788888998887776 356789999999999999999999999999999999999999999999988877 45578
Q ss_pred HHHHHHHHHCCCc
Q 035503 726 SQVRDIMKEKGLR 738 (788)
Q Consensus 726 ~~~~~~~~~~~~~ 738 (788)
.++|.+.++..++
T Consensus 211 rkyy~~alkl~~~ 223 (289)
T KOG3060|consen 211 RKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHhChH
Confidence 8899988887653
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00027 Score=64.90 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhh---
Q 035503 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS--- 615 (788)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~--- 615 (788)
.....-+..|+..|++++|.+.......-+....+ +.++.+..+.+-|.+.+++|.+- .+..|.+.|..++.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLA 183 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHh
Confidence 33334455566667777776666653322222222 23445555666666666666652 23444444444332
Q ss_pred -ccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 616 -HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 616 -~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
..+.+.+|.-+|+++.. +..|++.+.+..+.+....|++++|..+++++
T Consensus 184 ~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred ccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 23455666666666643 24455555555555555555555555555544
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.29 E-value=0.0065 Score=61.82 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHh
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL-PTPIVTSLVDMYAKCGNIHQAKRVFD 562 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (788)
.+.....+++++..-..--..+|...+....+...+..|..+|.++.+.+..+ +..+..++++.|| .++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44555566666543222223455666666667777777888888877766544 5556666666554 466777777777
Q ss_pred hCCC--CChhhH-HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHhcHhhcC--
Q 035503 563 ISPS--KELPVY-NAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACSHAGLVNEGLELFVGMFSDHQ-- 635 (788)
Q Consensus 563 ~~~~--~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-- 635 (788)
--.+ +|...| ...++-+...++-..|..+|++.+..++.|+. ..|..++.--+.-|+...++++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 4433 444433 45666667777777777788877776555543 5677777766777777777777776655443
Q ss_pred CCCCcchHHHHHHHHhhcCCh
Q 035503 636 VKPSMEHFGCVVNLLSRCGNL 656 (788)
Q Consensus 636 ~~p~~~~~~~l~~~~~~~g~~ 656 (788)
..+...+-..+++.|.-.+..
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hcCCCChHHHHHHHHhhcccc
Confidence 333333444455555444443
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.29 E-value=0.00028 Score=78.42 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
++-.+..+|-+.|+.++|..+++++++.. +-|..+.|.+...|... +.++|..++.+.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 44445555555555555555555555543 33444555555555555 555555555444
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=6.2e-05 Score=75.23 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=106.1
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETE 689 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 689 (788)
.+...|++++|+..++.+++ ..|+...|. ..++.+.+.++.++|.+.++++ ...|+ ...+.+++.++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 45678999999999999874 457655554 7889999999999999999998 46666 567889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 690 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+|+..++..+..+|+++..|..|+.+|..+|+..+|...+.+.....
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999888876543
No 136
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.28 E-value=2e-06 Score=64.38 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC-CcHHHHHHHHHHHHCC
Q 035503 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG-RWNEVSQVRDIMKEKG 736 (788)
Q Consensus 671 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 736 (788)
++..|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|...+++.++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999999999999999999 7999999999987653
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.25 E-value=2.2e-05 Score=68.30 Aligned_cols=115 Identities=14% Similarity=0.050 Sum_probs=86.7
Q ss_pred HHHHHHHcCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 035503 591 LFKNLQQKGIDPD-SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PC 668 (788)
Q Consensus 591 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 668 (788)
.+++.+.. .|+ ......+...+...|++++|.+.++.+... .+.+...+..++..+.+.|++++|..+++++ ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555553 443 344556666788889999999999888642 1234667778888899999999999888887 33
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 669 -DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 669 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
+.+...+..++..+...|++++|+..++++++.+|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 34466788888899999999999999999999999976643
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=0.0002 Score=78.91 Aligned_cols=208 Identities=15% Similarity=0.116 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHcCChhHH-HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 035503 400 LWNTLLAAYADLGRSGEA-SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478 (788)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a-~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 478 (788)
....+=.+....|..++| .+++.++.+ ++....+.....+++.-...... ....+...+..|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHH
Confidence 344444455666776666 445554443 22222222222333322222222 2345688889999999
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTT-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (788)
.+.|.+++|..+++...+ +.|+.. ....+...+.+.+++++|....++++...| .+......++.++.+.|++++|
T Consensus 97 ~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcchHHH
Confidence 999999999999999998 567754 566677888999999999999999999998 7888889999999999999999
Q ss_pred HHHHhhCCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 558 KRVFDISPSKE---LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 558 ~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
..+|+++..++ ..+|..+..++...|+.++|...|++..+.. .|....|+.++. +...-..+++++
T Consensus 174 ~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~ 242 (694)
T PRK15179 174 DACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHc
Confidence 99999887533 4688889999999999999999999988763 455555555442 333334555554
No 139
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.2e-05 Score=76.27 Aligned_cols=272 Identities=10% Similarity=-0.004 Sum_probs=163.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhcc
Q 035503 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST-TTITCALSACTDV 516 (788)
Q Consensus 438 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~ 516 (788)
.....+.+..++..|+..+....+... .+..-|..-...+...|++++|+--.++-.+ ++|.. ......-.++...
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhh
Confidence 345677888888888888888877633 2466677777777778888888776666554 33432 2344444555555
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CChhhHHHH-HHHHHhCCCHHHHHH
Q 035503 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-----KELPVYNAM-ISGYAMHGLAVEALA 590 (788)
Q Consensus 517 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-~~~~~~~g~~~~A~~ 590 (788)
++..+|...++.-. .+ ....|+..++.+.. |....|..+ ..++.-.|++++|..
T Consensus 131 ~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 55555555554100 00 11122222222221 111233322 235566777777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-------------HHHHHHhhcCChH
Q 035503 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-------------CVVNLLSRCGNLD 657 (788)
Q Consensus 591 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-------------~l~~~~~~~g~~~ 657 (788)
.--..+... ..+......-..++-..++.+.|+..|++.+ .+.|+...-. .-++-..+.|++.
T Consensus 191 ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 191 EAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 666655432 1122222222223455677777888777665 4455532221 1123456778888
Q ss_pred HHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 658 EALRVILTM-PC-----DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 658 ~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
+|.+.|.+. .. +|++..|.....+..+.|+.++|+.-.+.+++++|.-..+|...++++...++|++|.+.+++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776 23 344455666666677788888888888888888888888888888888888888888888887
Q ss_pred HHHCC
Q 035503 732 MKEKG 736 (788)
Q Consensus 732 ~~~~~ 736 (788)
..+..
T Consensus 347 a~q~~ 351 (486)
T KOG0550|consen 347 AMQLE 351 (486)
T ss_pred HHhhc
Confidence 76544
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=2.1e-05 Score=79.60 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=83.9
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNE 687 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~ 687 (788)
|+..+...++++.|+.+++++.+. .|+ ....++..+...++-.+|.+++.+. . .+.+...+...+..|...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 344444455566666666655432 132 3334555555555666666665555 1 22345566667777889999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 688 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
++.|+.+++++.+..|++..+|..|+.+|...|++++|+-.++.+-
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999998888764
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=1.2e-05 Score=75.07 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=73.6
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCCCcchH-HHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHH
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHF-GCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~ 690 (788)
..+.+++++|+..|.+++ .+.|+..+| ..-+.+|.+.|.++.|.+-.+.+ ..+|.. .+|..|+.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 446677777777777766 555654443 36667777777777777766665 344443 477788888888888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcH
Q 035503 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723 (788)
Q Consensus 691 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 723 (788)
|++.|+++++++|++......|-.+-.+.+.-.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 888888888888888777777766655555444
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=3.4e-05 Score=67.71 Aligned_cols=115 Identities=16% Similarity=0.057 Sum_probs=62.6
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHH
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP-CDPDA----HIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~ 690 (788)
.++...+...++.+...++-.|- ......++..+...|++++|...|+.+. ..|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555543321111 1222245555666666666666666652 11222 234445566666677777
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 691 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
|+..++.+ ...+-.+..+..+|++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77666552 223334556666777777777777777777653
No 143
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.17 E-value=4.4e-06 Score=61.51 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.++..+...|++++|+..++++++.+|+++.++..++.++...|++++|..+++++++..+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3567788999999999999999999999999999999999999999999999999887653
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0018 Score=59.72 Aligned_cols=153 Identities=11% Similarity=0.052 Sum_probs=81.5
Q ss_pred HHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHH
Q 035503 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR----NGQMN 450 (788)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~ 450 (788)
..|+..|++++|++...... +......=...+.+..+.+-|.+.+++|.+. -+..|.+.|..++.+ .+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 33444444455444444321 2222222233445556667777777777653 244455555555443 34566
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHH-HHHHHHHH
Q 035503 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN-GRAIHGYL 529 (788)
Q Consensus 451 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~ 529 (788)
+|.-+|++|.++ ..|+..+.+....++...|++++|..++++.+... ..++.++..++-+....|...+ -.+...++
T Consensus 191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 677777777553 35566666666666777777777777777776653 3445555555555445554433 33444444
Q ss_pred HHcCC
Q 035503 530 IRHDL 534 (788)
Q Consensus 530 ~~~~~ 534 (788)
....+
T Consensus 269 k~~~p 273 (299)
T KOG3081|consen 269 KLSHP 273 (299)
T ss_pred HhcCC
Confidence 44443
No 145
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.16 E-value=9.8e-06 Score=78.27 Aligned_cols=281 Identities=14% Similarity=0.091 Sum_probs=153.9
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCh----hhHHHHHHHHHhCCCchHHHHHHHHHH--hC--CCCC-CHHHHHHHHHH
Q 035503 442 GFLRNGQMNEAKDMFLQMQSLGVQPNL----ITWTTLISGLTQNSCGNEAILFFQEML--ET--GIKP-STTTITCALSA 512 (788)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~--~~--~~~p-~~~~~~~ll~~ 512 (788)
-+++.|+......+|+...+.|.. |. ..|..|..+|.-.+++++|+++-..=+ .+ |-+. ...+-..+...
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 478888888888888888777643 32 345566667777777777776643211 10 1000 11122223333
Q ss_pred hhccCchHHHHHHHHHH----HHcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHH
Q 035503 513 CTDVASLRNGRAIHGYL----IRHDL-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 587 (788)
+-..|.+++|.-+..+- .+.|- .....++..++..|...|+.-.-.. + .+...++.=+ ...++.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~-----p-ee~g~f~~ev-----~~al~~ 173 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA-----P-EEKGAFNAEV-----TSALEN 173 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC-----h-hhcccccHHH-----HHHHHH
Confidence 34445555554443322 22221 1233344555555554443211000 0 0000010000 001223
Q ss_pred HHHHHHHHH----HcCC-CCCHhHHHHHHHHhhccCcHHHHHHHHHhc---HhhcCCCCC-cchHHHHHHHHhhcCChHH
Q 035503 588 ALALFKNLQ----QKGI-DPDSITFTNILNACSHAGLVNEGLELFVGM---FSDHQVKPS-MEHFGCVVNLLSRCGNLDE 658 (788)
Q Consensus 588 A~~~~~~m~----~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 658 (788)
|.++|.+-+ ..|- -..-..|..|.+.|.-.|+++.|+...+.- .+++|-+.. ...+..|++++.-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 334443311 1110 012244666666677778888888766542 233443322 4567788888888889988
Q ss_pred HHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHhCCCcHH
Q 035503 659 ALRVILTM--------PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE------PDNPGNYVALSNAYAASGRWNE 724 (788)
Q Consensus 659 A~~~~~~~--------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 724 (788)
|.+.|+.. ..........+|++.|....+++.|+...++-+.+. -....+++.|+++|-..|..++
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 88888664 112334566678888888888888888887765532 2246788899999999999998
Q ss_pred HHHHHHHHHH
Q 035503 725 VSQVRDIMKE 734 (788)
Q Consensus 725 A~~~~~~~~~ 734 (788)
|......-++
T Consensus 334 Al~fae~hl~ 343 (639)
T KOG1130|consen 334 ALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHH
Confidence 8877665543
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.14 E-value=2.7e-05 Score=66.00 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=67.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHH
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTMP-CDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALS 713 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 713 (788)
++..++..+.+.|++++|.+.+.++. ..|+ ...+..++.++...|+++.|+..+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44556666667777777777776662 2222 2355667777788888888888888888877774 45677788
Q ss_pred HHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 714 NAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 714 ~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.++.+.|++++|...++.+.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 888888888888888888777653
No 147
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.12 E-value=0.0094 Score=58.08 Aligned_cols=275 Identities=15% Similarity=0.148 Sum_probs=177.2
Q ss_pred cCCHHHHHHHHHHhhhCCCCCChhhHHHHHH--HHHhCCCchHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhccCchHH
Q 035503 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLIS--GLTQNSCGNEAILFFQEMLETGIKPSTT--TITCALSACTDVASLRN 521 (788)
Q Consensus 446 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~ 521 (788)
.|+-..|.++-.+..+. +..|....-.++. +-.-.|+++.|.+-|+.|.. .|... -+..+.-...+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 45666666655544211 1123333333332 33456888888888888875 33322 23334444466788888
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC-----CCChhh--HHHHHHHH---HhCCCHHHHHHH
Q 035503 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-----SKELPV--YNAMISGY---AMHGLAVEALAL 591 (788)
Q Consensus 522 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~--~~~l~~~~---~~~g~~~~A~~~ 591 (788)
|..+-+.....-+ .-.......+...+..|+|+.|+++++.-. ++++.- -..|+.+- .-.-+...|...
T Consensus 173 Ar~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 8888888887776 456677788888999999999999987433 344321 11222211 112345566666
Q ss_pred HHHHHHcCCCCCHhHHH-HHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----
Q 035503 592 FKNLQQKGIDPDSITFT-NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM---- 666 (788)
Q Consensus 592 ~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 666 (788)
-.+..+ +.||..--. .-..++.+.|+..++-.+++.+- +..|.+.+. ..|.+..--+.++.-+++.
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIA----LLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHH
Confidence 555444 566654332 23446889999999999999887 445666543 3444333333344333333
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC-CCcHHHHHHHHHHHHC
Q 035503 667 PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS-GRWNEVSQVRDIMKEK 735 (788)
Q Consensus 667 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 735 (788)
..+|+ .........+....|++..|..-.+.+....|. ..+|..|+++-... |+-.++...+-+....
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 23444 456777888889999999999999999999999 78899999997665 9999999988876654
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.12 E-value=3.4e-06 Score=65.87 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=56.3
Q ss_pred cCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHH
Q 035503 653 CGNLDEALRVILTM----PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728 (788)
Q Consensus 653 ~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 728 (788)
.|++++|+.+++++ +..++...|..++.++.+.|++++|+.++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666 1112445666678888888888888888888 777777777777888888888888888888
Q ss_pred HHH
Q 035503 729 RDI 731 (788)
Q Consensus 729 ~~~ 731 (788)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.10 E-value=2.8e-05 Score=62.72 Aligned_cols=94 Identities=29% Similarity=0.305 Sum_probs=77.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
+..++..+...|++++|...++++ ...| +...+..++..+...|++++|+..++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 456677778888888888888776 2333 34667778888888899999999999999999998889999999999999
Q ss_pred CcHHHHHHHHHHHHCC
Q 035503 721 RWNEVSQVRDIMKEKG 736 (788)
Q Consensus 721 ~~~~A~~~~~~~~~~~ 736 (788)
++++|...++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876543
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.03 E-value=0.00024 Score=62.38 Aligned_cols=123 Identities=17% Similarity=0.166 Sum_probs=87.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc----hHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPD---SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME----HFG 644 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~ 644 (788)
|..++..+ ..++...+...++++.... +.+ ......+...+...|++++|...|+.+... . |+.. ...
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~--~d~~l~~~a~l 89 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-A--PDPELKPLARL 89 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--CCHHHHHHHHH
Confidence 33444444 4788888888888888763 222 123333445678889999999999988754 2 3332 334
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035503 645 CVVNLLSRCGNLDEALRVILTMPC-DPDAHIIGSLLSTCVKSNETELAEYISEHLL 699 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (788)
.|+..+...|++++|+..++.... ...+..+...+.++...|++++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 678888999999999999988643 2334567778888999999999999998874
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1e-05 Score=50.71 Aligned_cols=35 Identities=37% Similarity=0.593 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCc
Q 035503 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182 (788)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 182 (788)
.+||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00025 Score=71.98 Aligned_cols=124 Identities=11% Similarity=0.065 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 035503 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516 (788)
Q Consensus 437 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (788)
..|+..+...++++.|+.+|+++.+. ++.....++..+...++..+|.+++++.++. .+-+...+..-...|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~----~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER----DPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc----CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 34455556677788888888888766 3344555777777777788888888888764 233555555555667778
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 035503 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566 (788)
Q Consensus 517 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (788)
++.+.|..+.+++++..| .+...|..|+.+|.+.|+++.|+..++.++-
T Consensus 248 ~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888888777 6777888888888888888888888887763
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=8.9e-05 Score=70.06 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=88.8
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKS---NETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 637 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
+-|.+.|..|+..|.+.|+.+.|...|.++ .. .+++..+..++.++..+ .+..++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 445888999999999999999999999887 33 34566777787775433 36688999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHCCCccCC
Q 035503 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 741 (788)
|+..++..|++.+|...++.|++..+...|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999998765544
No 154
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.98 E-value=1.3e-05 Score=50.23 Aligned_cols=35 Identities=40% Similarity=0.666 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCH
Q 035503 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283 (788)
Q Consensus 249 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 283 (788)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.97 E-value=5.7e-05 Score=77.20 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=89.4
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSN 686 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 686 (788)
....+...|++++|+.+|+++++ +.|+ ...|..++.+|.+.|++++|+..++++ ...| +...|..++.+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34557788999999999999984 4555 667779999999999999999999988 3444 4567888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 687 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
++++|+..++++++++|+++.....+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998888776665444
No 156
>PRK15331 chaperone protein SicA; Provisional
Probab=97.96 E-value=6.3e-05 Score=64.51 Aligned_cols=100 Identities=12% Similarity=0.036 Sum_probs=84.2
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 635 QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 635 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
|+.++ .+.....+.-+...|++++|..+|.-+- ..-+...|..|+..|...+++++|+..|..+..++++||.+.+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44444 2333455666778999999999998872 23456689999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHH
Q 035503 712 LSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
.+..|...|+.+.|...|+.+.+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998877
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.93 E-value=7.9e-05 Score=67.68 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=71.6
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTMP-CDP---D-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
..+..++..+.+.|++++|...++++- ..| + ...+..++..+...|++++|+..++++++..|++...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566777777777777777777661 122 2 35778888888999999999999999999999999999999999
Q ss_pred HHhCCC--------------cHHHHHHHHHHHHCC
Q 035503 716 YAASGR--------------WNEVSQVRDIMKEKG 736 (788)
Q Consensus 716 ~~~~g~--------------~~~A~~~~~~~~~~~ 736 (788)
|...|+ +++|.+.+++....+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 988877 455666666655544
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=3.7e-05 Score=71.98 Aligned_cols=91 Identities=23% Similarity=0.175 Sum_probs=81.4
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHH
Q 035503 647 VNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 724 (788)
+.-+.+.+++.+|+..|.++ ... .|++.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|..+|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45677889999999999988 444 4567788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCC
Q 035503 725 VSQVRDIMKEKGL 737 (788)
Q Consensus 725 A~~~~~~~~~~~~ 737 (788)
|++.|++.++..+
T Consensus 168 A~~aykKaLeldP 180 (304)
T KOG0553|consen 168 AIEAYKKALELDP 180 (304)
T ss_pred HHHHHHhhhccCC
Confidence 9999998887654
No 159
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.91 E-value=0.032 Score=55.82 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=56.0
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 661 RVILTMPCDP----DAHIIGSLLST--CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 661 ~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
.++++.+..| +...-+.|..+ +..+|++.++.-...=+.++.| ++.+|..+|.+++...++++|..++..+
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3444544433 33455666666 5789999999988888889999 6999999999999999999999999864
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.91 E-value=0.00013 Score=61.63 Aligned_cols=104 Identities=11% Similarity=0.103 Sum_probs=64.3
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD----AHIIGSLLS 680 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 680 (788)
+..+...+...|++++|.+.|+.+.....-.+. ...+..++.++.+.|++++|...++.+ ...|+ ...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444555666666666666666543211111 234445666666666666666666665 22222 346777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 035503 681 TCVKSNETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
++...|+.++|+..++++++..|+++....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 888888888888888888888888765443
No 161
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.89 E-value=0.04 Score=56.34 Aligned_cols=210 Identities=9% Similarity=0.036 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC---CHHHHHHHHhhCCC---CC-hhhHHHHHHHHHhCCCHHHHHHH
Q 035503 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG---NIHQAKRVFDISPS---KE-LPVYNAMISGYAMHGLAVEALAL 591 (788)
Q Consensus 519 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~ 591 (788)
.+++..+++..+..-...+..+|..+++.--..- +.+.....++++.. .+ ..+|..++..-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4556666666665444344445555544322222 24455555554433 22 24678888888888889999999
Q ss_pred HHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhCC--
Q 035503 592 FKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTMP-- 667 (788)
Q Consensus 592 ~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-- 667 (788)
|.+..+.+..+ +.....+++.- --.++.+-|.++|+.=++.+ +|...|. ..++.+...++-..|..+|++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy-~cskD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEY-YCSKDKETAFRIFELGLKKF---GDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHH-HhcCChhHHHHHHHHHHHhc---CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 99999988777 55556666654 44678889999999776654 4544554 78888999999999999999982
Q ss_pred -CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 668 -CDPD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN----PGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 668 -~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
..|+ ...|..++.--..-||...+.++-++.....|.+ ...-..+..-|.=++++..-..-++.+
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 2344 3689999999899999999999999888877732 123334455566666665544444443
No 162
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=1.9e-05 Score=49.00 Aligned_cols=34 Identities=35% Similarity=0.559 Sum_probs=29.8
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC
Q 035503 147 VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180 (788)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 180 (788)
+.+|+.+|.+|++.|+++.|+.+|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578999999999999999999999999988877
No 163
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=2.6e-05 Score=48.42 Aligned_cols=34 Identities=29% Similarity=0.576 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCC
Q 035503 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281 (788)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 281 (788)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999887
No 164
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.86 E-value=4.6e-05 Score=57.66 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=54.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 679 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
...|...++++.|+.+++++++++|+++..+..++.+|.+.|++++|...++...+..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45688999999999999999999999999999999999999999999999999987764
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.84 E-value=0.00018 Score=73.61 Aligned_cols=98 Identities=9% Similarity=0.013 Sum_probs=79.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhh
Q 035503 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSR 652 (788)
Q Consensus 574 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 652 (788)
.....+...|++++|+++|+++++.. +.+...+..+..+|...|++++|+..+++++ .+.|+ ...|..++.+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHH
Confidence 44567788999999999999998864 3356778888889999999999999999997 44564 6778899999999
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHH
Q 035503 653 CGNLDEALRVILTM-PCDPDAHII 675 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~~p~~~~~ 675 (788)
.|++++|+..|+++ ...|+....
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999987 445554433
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.84 E-value=0.00012 Score=66.20 Aligned_cols=93 Identities=14% Similarity=-0.025 Sum_probs=73.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
...+..++..+...|++++|+..++++ ...|+ ..+|..++..+...|++++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 345556777777888888888888777 22222 3478889999999999999999999999999999999999999
Q ss_pred HHH-------hCCCcHHHHHHHHHH
Q 035503 715 AYA-------ASGRWNEVSQVRDIM 732 (788)
Q Consensus 715 ~~~-------~~g~~~~A~~~~~~~ 732 (788)
+|. +.|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 988 888888666665544
No 167
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.82 E-value=0.045 Score=54.76 Aligned_cols=195 Identities=13% Similarity=0.111 Sum_probs=112.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHH-------HHHhh-c---cCchHHHHHHHHHHHHcCCCC
Q 035503 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA-------LSACT-D---VASLRNGRAIHGYLIRHDLCL 536 (788)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-------l~~~~-~---~~~~~~a~~~~~~~~~~~~~~ 536 (788)
..++..++....+.++..+|.+.+.-+.- +.|+...-.-+ .+..+ . ..++..-..+|+.+...+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD- 374 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID- 374 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-
Confidence 34566677777777888888777776654 33433211111 11111 1 11233334455555555542
Q ss_pred ChhHHHH---HHHHHHHcCC-HHHHHHHHhhCCC---CChhhHHHHH----HHHHh---CCCHHHHHHHHHHHHHcCCCC
Q 035503 537 PTPIVTS---LVDMYAKCGN-IHQAKRVFDISPS---KELPVYNAMI----SGYAM---HGLAVEALALFKNLQQKGIDP 602 (788)
Q Consensus 537 ~~~~~~~---l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~m~~~~~~p 602 (788)
....... .+.-+.+.|. -++|+.+++.+.. -|...-|... ..|.+ .....+-+.+-+-..+.|++|
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 2222222 2344556666 7788888876554 4443333221 12221 122333344444455677776
Q ss_pred ----CHhHHHHHHHH--hhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCC
Q 035503 603 ----DSITFTNILNA--CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668 (788)
Q Consensus 603 ----~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 668 (788)
+...-+.|.+| +...|++.++.-+-.-+. .+.|++.+|.-++-++....+++||.+++..+|.
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 33445555555 456799988876655554 7789999999999999999999999999999864
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=2.3e-05 Score=58.30 Aligned_cols=54 Identities=24% Similarity=0.433 Sum_probs=47.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
...|++++|+..++++++.+|++..++..++.+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999999999999999999999999776654
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.00088 Score=71.56 Aligned_cols=63 Identities=19% Similarity=0.127 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..+..++......|++++|...++++++++|+ ...|..++.++...|+.++|.+.+++.....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34444444444455555555555555555553 4555555555555666555555555555444
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0068 Score=59.58 Aligned_cols=214 Identities=11% Similarity=0.042 Sum_probs=131.7
Q ss_pred HhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh---------------hHHHHH
Q 035503 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP---------------VYNAMI 576 (788)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l~ 576 (788)
++...|+.+.|..+--.+++.+. .+......-..++.-.++.+.|+..|++....|+. .|..-.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 34557788888888777777765 33333333344455567888888888877654332 233334
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhh
Q 035503 577 SGYAMHGLAVEALALFKNLQQK---GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSR 652 (788)
Q Consensus 577 ~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 652 (788)
.-..+.|++..|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.-.+++. .+.|. ...|..-+.++..
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 4567889999999999887653 233455556666667888899999988888775 55555 4555666677778
Q ss_pred cCChHHHHHHHHhC-CCC--CC-HHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhcCCC-CCc-----
Q 035503 653 CGNLDEALRVILTM-PCD--PD-AHIIGSLLSTCVKSN---------------ETELAEYISEHLLQLEPD-NPG----- 707 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~~--p~-~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~p~-~~~----- 707 (788)
.+++++|.+.++++ ... +. ..++.....++.+.+ +.+--...-..++...|+ +..
T Consensus 334 le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~ea 413 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEA 413 (486)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHH
Confidence 88889998888877 211 21 223333333332221 112222222335556666 221
Q ss_pred --hHHHHHHHHHhCCCcHHHHHHH
Q 035503 708 --NYVALSNAYAASGRWNEVSQVR 729 (788)
Q Consensus 708 --~~~~l~~~~~~~g~~~~A~~~~ 729 (788)
-+-..+.+|...++..++.+..
T Consensus 414 E~kFkevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 414 EAKFKEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred HHHHHHHHHHHHHhcCHHHHhhcc
Confidence 2456777888888877776653
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.75 E-value=0.00069 Score=61.54 Aligned_cols=128 Identities=19% Similarity=0.211 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD--SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCV 646 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 646 (788)
..+..+...+...|++++|+..|++.......+. ...+..+..++.+.|++++|+..+++++. ..|+ ...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHH
Confidence 4567777788888888888888888776533322 35666777778888888888888887764 3343 4555567
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
+.+|...|+...+..-+..+ ...+++|...++++++.+|++ +..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 77777777766654333221 123678899999999999986 5455555544443
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.75 E-value=7.5e-05 Score=54.86 Aligned_cols=61 Identities=26% Similarity=0.305 Sum_probs=50.1
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 646 VVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 646 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
++..+.+.|++++|++.|+++ ...| +...|..++.++...|++++|+..++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567788889999999998888 3445 456889999999999999999999999999999874
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.74 E-value=0.0022 Score=61.37 Aligned_cols=180 Identities=15% Similarity=0.102 Sum_probs=108.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHhhCCCC--Chh----hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 035503 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSK--ELP----VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610 (788)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 610 (788)
+.......+..+...|++++|.+.|+.+... +.. +.-.++.++.+.+++++|+..+++.++....-....+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3344445566666778888888888766542 221 2234667778888888888888888775322122233333
Q ss_pred HHHhhc--cC---------------c---HHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 035503 611 LNACSH--AG---------------L---VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670 (788)
Q Consensus 611 l~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 670 (788)
+.+.+. .+ + ..+|+..|+++++.+ |+. .-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHH-
Confidence 333221 11 1 234555555555433 332 2233343333332100
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 671 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
-...-..++.-|.+.|.+..|+.-++.+++..|+. +.++..++.+|.+.|..++|.++.+.+.
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00111245666889999999999999999999884 5577888999999999999999887653
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.73 E-value=0.0035 Score=54.28 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=103.9
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCC-CCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CHHH
Q 035503 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV-KPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP---DAHI 674 (788)
Q Consensus 600 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~ 674 (788)
..|+...-..|..+....|+..+|..+|++... |+ .-|......++.+....+++.+|...++++ ..+| .+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 356666666677888899999999999988864 44 345666678888888899999998888877 2112 2234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
...+.+.+...|.+++|+..++.++.-.|+ +......+..+.++|+.++|..-+..+.+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 566788899999999999999999999998 777788899999999999888766665543
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.70 E-value=0.0013 Score=56.47 Aligned_cols=92 Identities=13% Similarity=0.054 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVV 647 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 647 (788)
...-.+...+...|++++|..+|+-+... .| +..-|..|..+|...|++++|+..|..+. .+.|+ +..+-.++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHH
Confidence 33444555556666677777666666553 33 34455556666666677777777776664 33343 55555666
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 035503 648 NLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~ 666 (788)
.++...|+.++|.+.|+.+
T Consensus 111 ~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 6666666666666666554
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.70 E-value=0.00081 Score=58.09 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=97.2
Q ss_pred HHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 035503 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM---PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703 (788)
Q Consensus 627 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 703 (788)
++++.++..+.|+...-..|+.++.+.|+..||...|++. ....|......+.++....+++..|...++++.+..|
T Consensus 76 ~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 76 LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 3344455567789888889999999999999999999998 3567888999999999999999999999999999998
Q ss_pred C--CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 704 D--NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 704 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
. .|.....++.+|...|++++|...|+....--+
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 7 788999999999999999999999998877554
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.69 E-value=2.4e-05 Score=47.93 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHH
Q 035503 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 694 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.69 E-value=0.001 Score=71.08 Aligned_cols=143 Identities=11% Similarity=-0.003 Sum_probs=102.8
Q ss_pred hCCCCChhhHHHHHHHHHh--CC---CHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhcc--------CcHHHHHHHHH
Q 035503 563 ISPSKELPVYNAMISGYAM--HG---LAVEALALFKNLQQKGIDPDS-ITFTNILNACSHA--------GLVNEGLELFV 628 (788)
Q Consensus 563 ~~~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------g~~~~A~~~~~ 628 (788)
.....+..+|...+.+... .+ ....|+.+|++.++. .|+. ..+..+..++... ++...+.+..+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3445677888888777543 33 367899999999885 5764 4555544444322 12334444444
Q ss_pred hcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 629 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
+.........++..|..++......|++++|...++++ ...|+...|..++..+...|+.++|...+++++.++|.++.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 43221123334567777777777889999999999998 56788888999999999999999999999999999999875
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=9e-05 Score=57.79 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHH
Q 035503 582 HGLAVEALALFKNLQQKGID-PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 659 (788)
.|++++|+.+++++.+.... |+...+..+..++.+.|++++|+.++++ . ...|. ......++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45566666666666554321 1233333355556666666666666655 1 22222 23333445555555555555
Q ss_pred HHHHH
Q 035503 660 LRVIL 664 (788)
Q Consensus 660 ~~~~~ 664 (788)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.0023 Score=63.43 Aligned_cols=142 Identities=16% Similarity=0.139 Sum_probs=83.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhcc-CcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHH
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA-GLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNL 649 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~ 649 (788)
.+..|...|++..|-+.+.+ +...|... |++++|+++|+++..-+..... ...+..++..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 34455556665555555444 44456666 7888888888887654432222 3345577888
Q ss_pred HhhcCChHHHHHHHHhCC---CC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHH
Q 035503 650 LSRCGNLDEALRVILTMP---CD-----PDAH-IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG-----NYVALSNA 715 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~~---~~-----p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~ 715 (788)
+.+.|++++|.+.|++.. .. .... .+...+-.+...||...|...+++....+|.... ....|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 899999999999998761 11 1121 2333444566779999999999999999987433 33344444
Q ss_pred HHh--CCCcHHHHHHHHH
Q 035503 716 YAA--SGRWNEVSQVRDI 731 (788)
Q Consensus 716 ~~~--~g~~~~A~~~~~~ 731 (788)
+.. ...+++|..-|+.
T Consensus 245 ~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHTT-CCCHHHHCHHHTT
T ss_pred HHhCCHHHHHHHHHHHcc
Confidence 443 2234445444443
No 181
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=7.4e-05 Score=45.11 Aligned_cols=31 Identities=35% Similarity=0.620 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHCCC
Q 035503 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178 (788)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 178 (788)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 182
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.00069 Score=54.34 Aligned_cols=61 Identities=21% Similarity=0.139 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 703 (788)
+..++..+...|++++|.+.++.. .. +.+...+..++..+...|+++.|...++++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 334444444445555555444443 11 12223555556666666666666666666666655
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.54 E-value=0.00082 Score=55.57 Aligned_cols=89 Identities=20% Similarity=0.028 Sum_probs=56.1
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHH
Q 035503 645 CVVNLLSRCGNLDEALRVILTMP---CDPD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD---NPGNYVALSNAY 716 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 716 (788)
.++.++-..|+.++|+.+|++.. .... ...+..++..+...|++++|+.++++.+...|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34455555666666666665551 1111 234555666677777777777777777777676 566666677777
Q ss_pred HhCCCcHHHHHHHHHHH
Q 035503 717 AASGRWNEVSQVRDIMK 733 (788)
Q Consensus 717 ~~~g~~~~A~~~~~~~~ 733 (788)
...|++++|...+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77777777777655433
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0027 Score=57.39 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDP--DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVV 647 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 647 (788)
.|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+..++++.. +.|+ ...+..++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~la 113 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 46666777777788888888887776543222 123566666777777888888888777763 2343 33444555
Q ss_pred HHHh
Q 035503 648 NLLS 651 (788)
Q Consensus 648 ~~~~ 651 (788)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.54 E-value=0.00057 Score=65.84 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=57.6
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhCC
Q 035503 649 LLSRCGNLDEALRVILTM-PCDPDA----HIIGSLLSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALSNAYAASG 720 (788)
Q Consensus 649 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g 720 (788)
.+.+.|++++|...|+.. ...|+. ..+..++.+|...|++++|+..|+++++..|++ +.++..++.+|...|
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 334456666666666555 122332 355666777777777777777777777777664 445666677777778
Q ss_pred CcHHHHHHHHHHHHCC
Q 035503 721 RWNEVSQVRDIMKEKG 736 (788)
Q Consensus 721 ~~~~A~~~~~~~~~~~ 736 (788)
++++|..+++.+++.-
T Consensus 232 ~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 232 DTAKAKAVYQQVIKKY 247 (263)
T ss_pred CHHHHHHHHHHHHHHC
Confidence 8888888877776654
No 186
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.53 E-value=0.00012 Score=44.14 Aligned_cols=31 Identities=48% Similarity=0.762 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHCCChhHHHHHHHHHHHcCC
Q 035503 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279 (788)
Q Consensus 249 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 279 (788)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 187
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.49 E-value=0.00043 Score=69.79 Aligned_cols=67 Identities=13% Similarity=-0.017 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN---YVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+...|++++.+|...|++++|+..|+++++++|++..+ |++++.+|..+|+.++|...++++++.+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999999999998854 9999999999999999999999998863
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.074 Score=56.01 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=84.5
Q ss_pred cCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCcCChhHHHHHHHH
Q 035503 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAV 308 (788)
Q Consensus 230 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 308 (788)
.|.+++|++++-.+..+|.. |..+.+.|++-...++++.--.. .-..-...+..+...++....++.|.+.+..
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788888888777766543 45555666666655555431100 0001123444455555555555555555443
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHH
Q 035503 309 AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388 (788)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (788)
.-. ....+.++.+..++++-+.+-+.+.+... ..-.+.+++.+.|.-++|.+
T Consensus 822 ~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~s~-------------------llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 822 CGD---------TENQIECLYRLELFGELEVLARTLPEDSE-------------------LLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred ccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcccc-------------------hHHHHHHHHHhhchHHHHHH
Confidence 211 12344555555555555555555444333 56667777777777777777
Q ss_pred HHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHH
Q 035503 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423 (788)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 423 (788)
.|-+...|. ..+..|...+++.+|.++-+.
T Consensus 874 a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 874 AYLRRSLPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHhccCcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 665554332 234566667777777766554
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.47 E-value=0.00016 Score=53.78 Aligned_cols=62 Identities=26% Similarity=0.336 Sum_probs=32.7
Q ss_pred hcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 035503 652 RCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713 (788)
Q Consensus 652 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 713 (788)
..|++++|++.++++ . .+.+...+..++.+|...|++++|+..+++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 345555555555554 1 1224445555666666666666666666666666666544444443
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.45 E-value=0.00027 Score=52.66 Aligned_cols=64 Identities=23% Similarity=0.218 Sum_probs=50.2
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSN-ETELAEYISEHLLQLEP 703 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 703 (788)
+..+..++..+.+.|++++|+..|+++ ...| +...|..++.++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445667777777788888888777776 3334 4567888888999998 79999999999999988
No 191
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.43 E-value=0.00022 Score=47.11 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
.+|..++.+|...|++++|++.++++++.+|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367889999999999999999999999999999999988875
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.43 E-value=0.002 Score=65.89 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=76.5
Q ss_pred HHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc-C-----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 035503 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL-R-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430 (788)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 430 (788)
..|.+.+..+......+++......+++.+..++-+... + -..|..++++.|...|..++++.+++.=...|+-
T Consensus 56 ~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF 135 (429)
T PF10037_consen 56 KKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIF 135 (429)
T ss_pred HHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccC
Confidence 334444444444555556666666666666666655542 1 1234456777777777777777777776667777
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhC
Q 035503 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481 (788)
Q Consensus 431 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 481 (788)
||..++|.|++.+.+.|++..|.++...|...+...+..++...+.+|.+-
T Consensus 136 ~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 136 PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred CChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777777777765555555555555444444443
No 193
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0012 Score=65.04 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+++++.-.|.+.+++..|+...+++++++|+|..+++.-+.+|...|+++.|+..|+++++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 4667777778888888888888888888888888888888888888888888888888887754
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.0096 Score=55.60 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHH
Q 035503 539 PIVTSLVDMYAKCGNIHQAKRVFDISPS--KEL----PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNI 610 (788)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l 610 (788)
......+..+...|++++|++.|+.+.. |+. .+.-.++.++.+.|++++|+..+++++..- |+. ..+...
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y 83 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHH
Confidence 3444455566666777777777765543 111 244556677777788888888887776642 322 112211
Q ss_pred HHHhh-------------ccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 035503 611 LNACS-------------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677 (788)
Q Consensus 611 l~~~~-------------~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 677 (788)
+.+.+ ..+...+|...|+.++..+ |+ .....+|...+..+... -...-..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y---P~-------------S~y~~~A~~~l~~l~~~-la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY---PN-------------SEYAEEAKKRLAELRNR-LAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----TT-------------STTHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC---cC-------------chHHHHHHHHHHHHHHH-HHHHHHH
Confidence 11111 1222345555555555443 32 22333343333332100 0011223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhCCCcHHHH
Q 035503 678 LLSTCVKSNETELAEYISEHLLQLEPDNP---GNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 678 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 726 (788)
++..|.+.|.+..|..-++.+++..|+.+ .++..++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 56678999999999999999999999954 46778889999999988443
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.29 E-value=0.0032 Score=64.38 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=97.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHH
Q 035503 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLE--GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474 (788)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 474 (788)
+......+++.+....+.+++..++.+.... ....-..|..+++..|.+.|..+.++.+++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4555667777777777888899988888765 22223445568999999999999999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 035503 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (788)
++.+.+.|++..|.++..+|...+...+..|....+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998877777777776666666554
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.27 E-value=0.0069 Score=50.14 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=48.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCC--HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHH
Q 035503 474 LISGLTQNSCGNEAILFFQEMLETGIKPS--TTTITCALSACTDVASLRNGRAIHGYLIRHDLC--LPTPIVTSLVDMYA 549 (788)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 549 (788)
+..++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..+++......|. .+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455556666666666666666554433 224444555566666666666666666554332 12233333444555
Q ss_pred HcCCHHHHHHHHhh
Q 035503 550 KCGNIHQAKRVFDI 563 (788)
Q Consensus 550 ~~g~~~~A~~~~~~ 563 (788)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 66666666665543
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.23 E-value=0.065 Score=51.42 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=31.0
Q ss_pred HHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHH
Q 035503 611 LNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVIL 664 (788)
Q Consensus 611 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 664 (788)
..-|.+.|.+..|+.-++.+++.+.-.|. .+....++.+|.+.|..++|.++..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 33466666666666666666665543333 3344455666666666666655543
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.23 E-value=0.017 Score=57.25 Aligned_cols=133 Identities=11% Similarity=0.100 Sum_probs=73.9
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhhh----CCCC-CChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC-----CHH-H
Q 035503 438 SVILGFLRN-GQMNEAKDMFLQMQS----LGVQ-PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP-----STT-T 505 (788)
Q Consensus 438 ~ll~~~~~~-g~~~~A~~~~~~~~~----~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~ 505 (788)
.+...|... |++++|++.|++..+ .|.+ .-...+..+...+.+.|++++|.++|++....-... +.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344455566 778888888877632 2210 012445566777888888888888888876542221 111 2
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHcCCCC--C--hhHHHHHHHHHHH--cCCHHHHHHHHhhCCCCChh
Q 035503 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCL--P--TPIVTSLVDMYAK--CGNIHQAKRVFDISPSKELP 570 (788)
Q Consensus 506 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~ 570 (788)
+...+-++...|+...|...++......|.. + ..+...|+.++-. ...+++|+.-|+.+.+.|..
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 2333345556778888888888777654321 1 2344555666543 35577777777777776654
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0058 Score=60.26 Aligned_cols=134 Identities=10% Similarity=0.061 Sum_probs=97.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-hhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA-CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
+|..++....+.+..+.|..+|++.+..+ .-+...|...... +...++.+.|..+|+..++.+ ..+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 57778888888888889999999987432 2234445444443 444677777999999988754 3456667788888
Q ss_pred HhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 650 LSRCGNLDEALRVILTMP-CDPDA----HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
+.+.|+.+.|..+|+++- .-|.. ..|...+..-.+.|+.+....+.+++.+..|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 889999999999998882 22332 48999999989999999999999999999888433
No 200
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.041 Score=50.23 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=81.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCC----CCCcchHHHHHHHH
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV----KPSMEHFGCVVNLL 650 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~p~~~~~~~l~~~~ 650 (788)
-...|...|..+.|-..+++.-. ....-++++|+++|++...-... ..-.+.+..+...|
T Consensus 97 As~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 34456666666655555554322 12344555666666554432111 11133445666778
Q ss_pred hhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHh
Q 035503 651 SRCGNLDEALRVILTMP-------CDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQL----EPDNPGNYVALSNAYAA 718 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~ 718 (788)
.+..+++||-..+.+-. .-|+. ..+...+-.+.-..|+..|+++++.--+. .|++..+..+|...|.
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd- 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD- 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-
Confidence 88888888877765541 11222 24555666677778999999999886653 4667778888877764
Q ss_pred CCCcHHHHHHH
Q 035503 719 SGRWNEVSQVR 729 (788)
Q Consensus 719 ~g~~~~A~~~~ 729 (788)
.|+.+++.+++
T Consensus 240 ~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 EGDIEEIKKVL 250 (308)
T ss_pred cCCHHHHHHHH
Confidence 56667666544
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.20 E-value=0.006 Score=58.90 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=58.4
Q ss_pred hccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCH
Q 035503 615 SHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP-CDPD----AHIIGSLLSTCVKSNET 688 (788)
Q Consensus 615 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~ 688 (788)
.+.|++++|+..|+.+++.+.-.+- ...+..++.+|...|++++|...|+.+- ..|+ ...+..++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4446666666666666544311111 2344566666666666666666666651 1122 34566667778888999
Q ss_pred HHHHHHHHHHHhcCCCCCc
Q 035503 689 ELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~ 707 (788)
+.|+..|+++++..|++..
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 9999999999999998654
No 202
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0027 Score=62.58 Aligned_cols=96 Identities=15% Similarity=0.048 Sum_probs=81.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
..+..|+.++.+.+++.+|+...++. . .+++...+..-+.+|...|+++.|+..|+++++++|+|..+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45668888999999999999998887 3 456677888888999999999999999999999999999999999998877
Q ss_pred CCCcHHH-HHHHHHHHHCC
Q 035503 719 SGRWNEV-SQVRDIMKEKG 736 (788)
Q Consensus 719 ~g~~~~A-~~~~~~~~~~~ 736 (788)
..++.+. .++|..|..+-
T Consensus 338 ~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 7766655 77899887654
No 203
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.17 E-value=0.006 Score=48.37 Aligned_cols=77 Identities=14% Similarity=0.249 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCC--------HHHHHHHHHHhhhCCCCCChhhHH
Q 035503 402 NTLLAAYADLGRSGEASRLFYQMQLEGI-SPNIISWNSVILGFLRNGQ--------MNEAKDMFLQMQSLGVQPNLITWT 472 (788)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~--------~~~A~~~~~~~~~~g~~~~~~~~~ 472 (788)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888888888888888 7888888888777665432 233444555555555555555555
Q ss_pred HHHHHH
Q 035503 473 TLISGL 478 (788)
Q Consensus 473 ~li~~~ 478 (788)
.++..+
T Consensus 109 ivl~~L 114 (120)
T PF08579_consen 109 IVLGSL 114 (120)
T ss_pred HHHHHH
Confidence 555444
No 204
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.15 E-value=0.00063 Score=52.15 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQL----EPD---NPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
.+++.++..|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778888888888888888888888864 222 255788899999999999999999988764
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.14 E-value=0.056 Score=54.27 Aligned_cols=121 Identities=18% Similarity=0.183 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhh---------ccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh
Q 035503 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACS---------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~---------~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 652 (788)
.|+.++|+.++..+....-.+++.++..+.+.|- .....++|+..|.+.. .+.|+...=-+++.++..
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLML 271 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHH
Confidence 5666666666666444444555555555554332 1223677888887553 455543222245555555
Q ss_pred cCChHH----HHHHH---Hh-C------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 653 CGNLDE----ALRVI---LT-M------PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 653 ~g~~~~----A~~~~---~~-~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
.|...+ ..++- .. . ....+-..+-+++.++.-.||.++|.+.+++++++.|..
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 554222 22222 11 1 122444556678899999999999999999999998773
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.008 Score=58.88 Aligned_cols=126 Identities=13% Similarity=0.022 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHH----hCCCC-CCHHHHHHHHHHhhccCchHHHHHHHHHHHH----cCC-CCChh
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEML----ETGIK-PSTTTITCALSACTDVASLRNGRAIHGYLIR----HDL-CLPTP 539 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~ 539 (788)
.|..|...|.-.|+++.|+..-+.-+ +-|-+ .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444555555566666655433321 11111 1123444455555556666666665555332 221 12334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---------CChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS---------KELPVYNAMISGYAMHGLAVEALALFKNL 595 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 595 (788)
...+|++.|.-..++++|+.++.+-.. ....++-+|..+|...|..++|+...+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455666666666667777666643221 12234555666666667777766665543
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.09 E-value=0.0045 Score=55.75 Aligned_cols=113 Identities=13% Similarity=0.213 Sum_probs=66.8
Q ss_pred HHHHHhc--ccCChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 387 KQVFNSI--ILRDVVLWNTLLAAYADL-----GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 387 ~~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
...|+.. ...|..+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE 111 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH
Confidence 3445444 355677777777777654 5566666677777788888888888888877654 2211 11111111
Q ss_pred hhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 035503 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518 (788)
Q Consensus 460 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 518 (788)
..-| -.+.+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 112 ---------------F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ---------------FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------------hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1001 11234566777777777777777777777777666543
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.046 Score=50.50 Aligned_cols=134 Identities=11% Similarity=0.013 Sum_probs=99.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC----CCCCcchHHHHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ----VKPSMEHFGCVV 647 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~p~~~~~~~l~ 647 (788)
-+.++.++.-.|.+.-...++++.++...+.++.....|.+.-.+.|+.+.|..+|++..+..+ +.-.........
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3567777777888888899999998876555777788888888899999999999997755432 222223333555
Q ss_pred HHHhhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 648 NLLSRCGNLDEALRVILTMPC--DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
..|.-++++.+|...+.+++. +.++...|+-+-...-.|+...|++..+.+++..|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 566778888899889988853 3344555665555566788999999999999999983
No 209
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.07 E-value=0.0063 Score=48.29 Aligned_cols=79 Identities=14% Similarity=0.302 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCChhhHHHHHHHHHhCCC--------chHHHHHHHHHHhCCCCCCHHHHH
Q 035503 437 NSVILGFLRNGQMNEAKDMFLQMQSLGV-QPNLITWTTLISGLTQNSC--------GNEAILFFQEMLETGIKPSTTTIT 507 (788)
Q Consensus 437 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~~~~p~~~~~~ 507 (788)
...|..+...+++...-.+|+.+...|+ .|+..+|+.++.+.++..- .-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666777999999999999999999 8999999999988776532 335678999999999999999999
Q ss_pred HHHHHhhc
Q 035503 508 CALSACTD 515 (788)
Q Consensus 508 ~ll~~~~~ 515 (788)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887643
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.06 E-value=0.0019 Score=48.64 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=51.0
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 647 VNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
...|.+.+++++|.++++.+ ...| ++..|...+..+...|++++|...++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35677788888888888877 3333 455777888889999999999999999999999876655443
No 211
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.05 E-value=0.012 Score=58.12 Aligned_cols=138 Identities=11% Similarity=0.069 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHH-hhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA-CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (788)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+..++.-+ .+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-SDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-T-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 45555666666666666666666666432 2334444444443 2334555557777777776644 6677777788888
Q ss_pred HHcCCHHHHHHHHhhCCC--C----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 035503 549 AKCGNIHQAKRVFDISPS--K----ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611 (788)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 611 (788)
.+.|+.+.|..+|++... + -...|...+..-.+.|+.+.+.++.+++.+. .|+...+..++
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 888888888888876654 1 2247888888888888888888888888774 44433333333
No 212
>PRK11906 transcriptional regulator; Provisional
Probab=97.01 E-value=0.009 Score=60.66 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHc-CCCCCH-hHHHHHHHHhhcc---------CcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhh
Q 035503 585 AVEALALFKNLQQK-GIDPDS-ITFTNILNACSHA---------GLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSR 652 (788)
Q Consensus 585 ~~~A~~~~~~m~~~-~~~p~~-~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 652 (788)
.+.|+.+|.+.... ...|+. ..|..+..++... ....+|.++-+++. .+.|+ +.....++.++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 44567777776621 244543 3444444333221 12234444444443 33333 4444455555566
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH--HHHHHhCCCcHHHHHH
Q 035503 653 CGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL--SNAYAASGRWNEVSQV 728 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~ 728 (788)
.|+.+.|...|+++ ...|+ +..|...+..+.-.|+.++|.+.++++++++|.-..+-..- .++|+..+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 66666666666666 33444 34555555556666666666666666666666643333222 22344433 4555555
Q ss_pred HH
Q 035503 729 RD 730 (788)
Q Consensus 729 ~~ 730 (788)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 43
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.64 Score=49.39 Aligned_cols=124 Identities=13% Similarity=0.107 Sum_probs=66.4
Q ss_pred cCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccC-----ChhHHHHHH
Q 035503 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLL 405 (788)
Q Consensus 331 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~ 405 (788)
-|++++|+++|-.+..+|. .+.++.+.|++-...++++.-... -..+|+.+.
T Consensus 747 ~g~feeaek~yld~drrDL-----------------------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig 803 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----------------------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIG 803 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----------------------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHH
Confidence 4778888888887777665 234455555666555555543211 123566666
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCch
Q 035503 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485 (788)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 485 (788)
..+.....+++|.+.+..-... ...+.++.+..++++-+.+-..+. -+....-.+.+.+.+.|.-+
T Consensus 804 ~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~ 869 (1189)
T KOG2041|consen 804 ETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCD 869 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHH
Confidence 6666666666666666542211 123444445444444444333332 23344445555566666666
Q ss_pred HHHHHH
Q 035503 486 EAILFF 491 (788)
Q Consensus 486 ~A~~~~ 491 (788)
+|.+.+
T Consensus 870 qAV~a~ 875 (1189)
T KOG2041|consen 870 QAVEAY 875 (1189)
T ss_pred HHHHHH
Confidence 655544
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.01 E-value=0.13 Score=53.79 Aligned_cols=180 Identities=13% Similarity=0.079 Sum_probs=93.8
Q ss_pred HHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHH
Q 035503 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284 (788)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 284 (788)
++++.+.|-.|+... +...++-.|++.+|.++|. +.|.-..|+++|.+|+--
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHH-------
Confidence 345556665565543 4456777888888888875 466667777777766521
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 035503 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364 (788)
Q Consensus 285 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 364 (788)
-..+-+...|+.++-..+.+.-.... .+..--.+...++...|+.++|..+.-+
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d--------------------- 728 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEICGD--------------------- 728 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhc---------------------
Confidence 12223334444444333333222111 0111112334556666666666655322
Q ss_pred CchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 035503 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444 (788)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 444 (788)
.|=.+-+.++-.++...+..+...+..-+.+...+.-|.++|..|-.. ..++....
T Consensus 729 ---------------~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHv 784 (1081)
T KOG1538|consen 729 ---------------HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHV 784 (1081)
T ss_pred ---------------ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhhee
Confidence 222333334434443344445555555555666666677777665432 23555566
Q ss_pred hcCCHHHHHHHHHHhhhC
Q 035503 445 RNGQMNEAKDMFLQMQSL 462 (788)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~ 462 (788)
..+++++|.++-+...+.
T Consensus 785 e~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred ecccchHhHhhhhhCccc
Confidence 667777777666665443
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.98 E-value=0.23 Score=52.04 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=45.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCH
Q 035503 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 554 (788)
..-+.+...+.-|-++|..|-.. ..+.+.....+++++|..+.+... ..-+.+|...++.++...++
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP----e~~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP----EFKDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc----cccccccchHHHHhhhhhhH
Confidence 33334444455555555554321 123344445555555555443322 22233444455555555555
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 555 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
++|.+ +|.+.|+..+|..+++++..
T Consensus 821 eEAqk------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 821 EEAQK------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHH------------------HHHHhcchHHHHHHHHHhhh
Confidence 55554 44456666777777766543
No 216
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.95 E-value=0.5 Score=47.23 Aligned_cols=105 Identities=20% Similarity=0.106 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHh
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 651 (788)
.+.-+.-+...|+...|.++-++. . .|+..-|...+.+++..++|++-..+-+. +-++--|...+..+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 344455555566666666655443 1 35666666666666666666655443221 122345556666666
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 035503 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 652 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
+.|+..+|..++.+++. ..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHH
Confidence 66666666666666421 2334445566666665544
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.94 E-value=0.0063 Score=49.29 Aligned_cols=91 Identities=18% Similarity=0.100 Sum_probs=68.5
Q ss_pred HHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhCC
Q 035503 647 VNLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN----PGNYVALSNAYAASG 720 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g 720 (788)
+.++...|++++|++.|.+. -.+..+..||+-..+++-+|+.++|..-+++++++.-+. ...|...+.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34567788888888888776 233456678888888888888888888888888875432 235667788888888
Q ss_pred CcHHHHHHHHHHHHCCC
Q 035503 721 RWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 721 ~~~~A~~~~~~~~~~~~ 737 (788)
+.++|..-|+...+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88888888888877774
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.93 E-value=0.015 Score=51.18 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
+...++..+...|+++.|+..+++++..+|-+...|..++.+|...|+..+|.+.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 556677778899999999999999999999999999999999999999999999998874
No 219
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.93 E-value=0.049 Score=52.72 Aligned_cols=153 Identities=11% Similarity=0.107 Sum_probs=66.7
Q ss_pred HHHcCChhHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHH-h---hhCC-CCCChhhHHHHHHHHHh
Q 035503 408 YADLGRSGEASRLFYQMQLE--GISPNIISWNSVILGFLRNGQMNEAKDMFLQ-M---QSLG-VQPNLITWTTLISGLTQ 480 (788)
Q Consensus 408 ~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-~---~~~g-~~~~~~~~~~li~~~~~ 480 (788)
+....+.++|+..+.+-+.. ....--.++..+..+.++.|.+++++..--. | .+.. ...-...|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777766665543 1112233555566666666666655432211 1 1110 00001223333334444
Q ss_pred CCCchHHHHHHHHHHhC-CCCCC---HHHHHHHHHHhhccCchHHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHHc
Q 035503 481 NSCGNEAILFFQEMLET-GIKPS---TTTITCALSACTDVASLRNGRAIHGYLIRH-----DLCLPTPIVTSLVDMYAKC 551 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 551 (788)
..++.+++.+-+.-... |..|. ......+..++...+.++++.+.|+.+.+. ++.....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44444444443333221 11110 122233444455555555555555555442 1222334555555555555
Q ss_pred CCHHHHHHH
Q 035503 552 GNIHQAKRV 560 (788)
Q Consensus 552 g~~~~A~~~ 560 (788)
.++++|.-+
T Consensus 176 ~D~~Kal~f 184 (518)
T KOG1941|consen 176 KDYEKALFF 184 (518)
T ss_pred HhhhHHhhh
Confidence 555555433
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.91 E-value=0.5 Score=46.64 Aligned_cols=275 Identities=12% Similarity=0.043 Sum_probs=148.2
Q ss_pred cCChHHHHHHHHhcc---cCChhHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCCHHHH
Q 035503 380 CERIDNAKQVFNSII---LRDVVLWNTLLAA--YADLGRSGEASRLFYQMQLEGISPNIIS--WNSVILGFLRNGQMNEA 452 (788)
Q Consensus 380 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~A 452 (788)
.|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|... |.... ...|.-..-+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 456666666554332 3455555555543 34569999999999999753 33322 22333334567888888
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCC-CCCCHHH--HHHHHHH--h-hccCchHHHHHHH
Q 035503 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTT--ITCALSA--C-TDVASLRNGRAIH 526 (788)
Q Consensus 453 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~ll~~--~-~~~~~~~~a~~~~ 526 (788)
..+-+..-..- +--...+...+...+..|+|+.|+++++.-.... +.++..- -..++.+ . .-..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877764431 1134667888999999999999999998776543 3344321 1112211 1 1123455566665
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCC
Q 035503 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQK-GIDPD 603 (788)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~ 603 (788)
.+..+..+..-+ .-..-..++.+.|+..++-.+++.+-+ |.+..+. +-.+.+.|+ .++.-+++.... .++||
T Consensus 253 ~~a~KL~pdlvP-aav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~n 327 (531)
T COG3898 253 LEANKLAPDLVP-AAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPN 327 (531)
T ss_pred HHHhhcCCccch-HHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCcc
Confidence 666655542222 222334566667777777777666554 3322222 222233333 233333332211 13343
Q ss_pred -HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHh-hcCChHHHHHHHHhC
Q 035503 604 -SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS-RCGNLDEALRVILTM 666 (788)
Q Consensus 604 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 666 (788)
......+..+-...|++..|..--+... ...|....|..|.+.-. ..|+-.++..++.+.
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3444445555556666666555444443 44566666666555543 336666666666554
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.90 E-value=0.012 Score=53.17 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=80.0
Q ss_pred CCchhHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH
Q 035503 430 SPNIISWNSVILGFLR-----NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504 (788)
Q Consensus 430 ~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 504 (788)
..|..+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 5677788888888764 57888888999999999999999999999998765 3322 1122222221
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC
Q 035503 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553 (788)
Q Consensus 505 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 553 (788)
.-..+-+-|..++++|...|+.|+..++..+++.+++.+.
T Consensus 114 ---------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ---------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1123456789999999999999999999999999987765
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.86 E-value=0.037 Score=51.67 Aligned_cols=144 Identities=13% Similarity=0.082 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc-hHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGID-P-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME-HFGCVV 647 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~ 647 (788)
.+-..+..+...|++.+|++.|+++...-.. | -......++.++.+.|++++|+..+++.++.+.-.|... .+..++
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3444556667777888888888777764211 1 123344556677777778888777777776654434321 111222
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----------------HH
Q 035503 648 NLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN-----------------YV 710 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~ 710 (788)
.++... .... + ......+...+|...++.+++..|+++.. -.
T Consensus 87 ~~~~~~--~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 87 LSYYKQ--IPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHH--HHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--Cccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 0000 0 11223344567777788888888876443 34
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 711 ALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 711 ~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.++..|.+.|.+..|...++.+++.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5788899999999999999998875
No 223
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.83 E-value=0.5 Score=45.43 Aligned_cols=195 Identities=22% Similarity=0.211 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISP-----SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 612 (788)
..........+...+++..+...+.... ......+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3444555555556666666655555432 1222344455555556666666666666655533222 111112222
Q ss_pred -HhhccCcHHHHHHHHHhcHhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHh
Q 035503 613 -ACSHAGLVNEGLELFVGMFSDHQVKP----SMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP--DAHIIGSLLSTCVK 684 (788)
Q Consensus 613 -~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~ 684 (788)
.+...|+++.|...+++... ..| ....+......+...++.++|...+.+. ...+ ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 45666667777666666632 222 1222233334455666777777666665 2222 24556666666777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.++++.|...+..++...|.....+..++..+...|+++++...+++.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777777755566666666666666777777776665544
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.98 Score=48.70 Aligned_cols=134 Identities=7% Similarity=-0.001 Sum_probs=69.5
Q ss_pred cCCCCCHHHHHH-----HHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---hHHHHHHHhcCCCC
Q 035503 277 EGVEPTRVSVTS-----ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL---EDAEVVFSRMVERD 348 (788)
Q Consensus 277 ~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~ 348 (788)
-|++.+..-|.. +++-+...+.+..|.++-..+...-... ..++.....-+.+..+. +-+..+-+++..+
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 355555554443 3444555666666666665554332222 45566666666665322 2222233333221
Q ss_pred chhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccC--------ChhHHHHHHHHHHHcCChhHHHHH
Q 035503 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR--------DVVLWNTLLAAYADLGRSGEASRL 420 (788)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~ 420 (788)
. .+...|..++.-...+|+.+-|..+++.=+.. +..-+...+.-+...|+.+-...+
T Consensus 504 ~---------------~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~V 568 (829)
T KOG2280|consen 504 L---------------TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQV 568 (829)
T ss_pred C---------------CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHH
Confidence 0 12225666666666778888888777643321 222344555556666666666666
Q ss_pred HHHHHHc
Q 035503 421 FYQMQLE 427 (788)
Q Consensus 421 ~~~m~~~ 427 (788)
+-.+..+
T Consensus 569 llhlk~~ 575 (829)
T KOG2280|consen 569 LLHLKNK 575 (829)
T ss_pred HHHHHHH
Confidence 6655543
No 225
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.81 E-value=0.021 Score=48.18 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=68.2
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHH
Q 035503 645 CVVNLLSRCGNLDEALRVILTMP----CDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG---NYVALSNAY 716 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~ 716 (788)
.-+....+.|++++|.+.|+.+. ..|- ..+-..++.+|.+.+++++|+..+++.+++.|.++. +++..|-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34455567788888888887772 2222 246677889999999999999999999999999765 466667677
Q ss_pred HhCCC---------------cHHHHHHHHHHHHCC
Q 035503 717 AASGR---------------WNEVSQVRDIMKEKG 736 (788)
Q Consensus 717 ~~~g~---------------~~~A~~~~~~~~~~~ 736 (788)
+++.. ..+|...|+.++.+-
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 77665 668888888877654
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.77 E-value=0.0019 Score=49.42 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=39.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-------P-CDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQL 701 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (788)
++..++..|.+.|++++|++.++++ + ..|+ ..++..++..+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455566666666666666665554 1 1122 346777888888888888888888888764
No 227
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.047 Score=52.11 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=76.1
Q ss_pred CCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcC---ChHHHHHHHHhC-CCCC-CHHH
Q 035503 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCG---NLDEALRVILTM-PCDP-DAHI 674 (788)
Q Consensus 601 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~ 674 (788)
+-|...|..|...|...|+.+.|...|.+.. .+.|+ +..+..++.++..+. ...++..+++++ ..+| |...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 4477888888888888888888888888776 44444 556667777665432 467778888887 3444 4556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
..-|...+...|++.+|...++.+++..|.+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6667777899999999999999999988774
No 228
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.61 E-value=0.014 Score=51.35 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=71.6
Q ss_pred HHHHhhcCChHHHHHHHHhC--CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 647 VNLLSRCGNLDEALRVILTM--PCDP-----DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~--~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
++-+.+.|++++|..-|..+ .+++ ....|.+-+.+..+.+.++.|+....++++++|....++...+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34456677777777666555 1221 1234555566778899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHCCC
Q 035503 720 GRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 720 g~~~~A~~~~~~~~~~~~ 737 (788)
..+++|+.-|+++++..+
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 999999999999988764
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.56 E-value=0.03 Score=54.11 Aligned_cols=121 Identities=11% Similarity=0.034 Sum_probs=53.7
Q ss_pred HHHhhccCcHHHHHHHHHhcHhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCCH-----HH
Q 035503 611 LNACSHAGLVNEGLELFVGMFSDHQVKP----SMEHFGCVVNLLSRCGNLDEALRVILTM-------PCDPDA-----HI 674 (788)
Q Consensus 611 l~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-----~~ 674 (788)
..++.-.+.++++++.|+.+.+-..-.. ...++..|...|.+..+.++|.-+..++ ..+.-. ..
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 3344444555555555555432211111 1234445555555555555555444333 111111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLE------PDNPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
...+.-+++..|..-.|.+..+++.++. |........++++|...|+.|.|..-|+.
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 2223334555555555555555544431 11233344455566666665555554444
No 230
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.7 Score=43.04 Aligned_cols=134 Identities=10% Similarity=0.034 Sum_probs=84.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHc-----CCCCChhHHHHHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-----DLCLPTPIVTSLV 545 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~ 545 (788)
.+.++.++.-.|.+.-.+..+++.++..-+.++.....+.+...+.|+.+.|...++...+. +......+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34455555556666666666666666544445555556666666666666666666654442 2223333444555
Q ss_pred HHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH
Q 035503 546 DMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 606 (788)
..|.-.+++.+|...|.+++. .++..-|.-.-+....|+..+|++.++.|+.. .|...+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 666777888888888887775 34455666666667778999999999998875 444433
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.40 E-value=0.97 Score=43.33 Aligned_cols=196 Identities=19% Similarity=0.156 Sum_probs=128.6
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCh-hhHHHHHH-H
Q 035503 504 TTITCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KEL-PVYNAMIS-G 578 (788)
Q Consensus 504 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~-~ 578 (788)
.........+...+.+..+...+...... ........+......+...+++..+...+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444555555555555555555542 2224445555666666667777777777765544 111 22233333 6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCC----CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC--cchHHHHHHHHhh
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDP----DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS--MEHFGCVVNLLSR 652 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 652 (788)
+...|+++.|...+++... ..| ....+......+...++.+.+...+.+... ..++ ...+..+...+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHH
Confidence 8888999999999988755 233 233344444446678899999999988864 3333 5667788888889
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 653 CGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
.++.++|...+... ...|+ ...+......+...++.+.+...+.+.++..|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999988887 33444 455666666666777899999999999999987
No 232
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=2.1 Score=46.30 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHH
Q 035503 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522 (788)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 522 (788)
+--+.-+...|+..+|.++-.+.. -||...|..-+.++...+++++-
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 333444445555555555544443 34444444444444444444443
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=96.29 E-value=0.084 Score=45.77 Aligned_cols=93 Identities=11% Similarity=-0.001 Sum_probs=57.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCC
Q 035503 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655 (788)
Q Consensus 576 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 655 (788)
.--+...|++++|..+|+-+...+ .-|..-+..|..++...+++++|+..|..+..- . .-|+..+-..+.+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCC
Confidence 334456777777777777766643 224455566666677777777777777766422 1 2334445556777777777
Q ss_pred hHHHHHHHHhCCCCCC
Q 035503 656 LDEALRVILTMPCDPD 671 (788)
Q Consensus 656 ~~~A~~~~~~~~~~p~ 671 (788)
.++|+..|..+...|.
T Consensus 121 ~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 121 AAKARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 7777777766643333
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.46 Score=45.40 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=16.1
Q ss_pred hcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 700 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
..+|+|...-..|+..|...|+.++|.+.+=.+
T Consensus 230 aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 230 AADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555555555555555555444333
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.23 E-value=0.037 Score=52.12 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
.+.-++......|+.++|...++++++..|+.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 33344444444455555555555555555553
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.18 E-value=1.1 Score=41.99 Aligned_cols=176 Identities=17% Similarity=0.116 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCCh------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKEL------PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 613 (788)
.+..-+..-.+.|++++|.+.|+.+....+ .+.-.++-++.+.+++++|+...++....-..-....|...+.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 333444455577888888888877765322 23445666777888888888888887764322122233333333
Q ss_pred hhc---c----Cc---HHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 035503 614 CSH---A----GL---VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA--HIIGSLLST 681 (788)
Q Consensus 614 ~~~---~----g~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~--~~~~~l~~~ 681 (788)
++. . .+ ..+|..-|+.++.++ |+.+ =..+|..-+..+ .|. ..=..+++-
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~---~d~LA~~Em~Iary 176 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKL---NDALAGHEMAIARY 176 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHH---HHHHHHHHHHHHHH
Confidence 321 1 11 123334444444332 2221 011111111111 011 112245677
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 682 CVKSNETELAEYISEHLLQLEPDNPG---NYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
|.+.|.+..|..-++.+++..|+.+. .+..+..+|...|-.++|.+.-+-+..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 89999999999999999998888544 566667789999999999887765543
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.13 E-value=0.0099 Score=36.49 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.059 Score=50.79 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=69.3
Q ss_pred HHHhhcCChHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 035503 648 NLLSRCGNLDEALRVILTM----P---CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD---NPGNYVALSNAYA 717 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~----~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 717 (788)
--+.+.|++.+|...|... | ..|+ .+..|+.++...|+++.|...|..+.+-.|+ -|+.+.-|+.+..
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~ 226 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG 226 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 3345667777777776665 2 1233 4555888899999999999999999998777 4677999999999
Q ss_pred hCCCcHHHHHHHHHHHHCCC
Q 035503 718 ASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~~~~~ 737 (788)
+.|+.++|..+|+.+.++-+
T Consensus 227 ~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 227 RLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HhcCHHHHHHHHHHHHHHCC
Confidence 99999999999999987643
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=96.09 E-value=0.28 Score=50.21 Aligned_cols=113 Identities=13% Similarity=0.014 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHH
Q 035503 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 583 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
....+|.++.++..+.+ +-|+.....+..+....++++.|...|+++. .+.|+ ...+...+..+.-.|+.++|.+
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 44567788888888865 4577777777777788888999999999886 67788 5677777788888999999999
Q ss_pred HHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 662 VILTM-PCDPDA---HIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 662 ~~~~~-~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
.++++ ...|-- ....-.+..|+ ....+.|+.+|-+--+
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHHHhhccc
Confidence 99995 555543 23333333444 3456778887766433
No 240
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.08 E-value=0.015 Score=35.64 Aligned_cols=33 Identities=24% Similarity=0.131 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
..|..++..+...|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677778888888888888888888888874
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.06 E-value=0.13 Score=43.54 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=56.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHh
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDP---DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 651 (788)
-.....+.|++++|++.|+.+...- +. ....-..++.+|.+.|++++|+..+++.++-+.-.|+.. |.....++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHH
Confidence 3444455666666666666665531 11 123344455566666666666666666654333333221 111112211
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 035503 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 652 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
.-...+.. +..+ ...=+..+....|...|+++++..|++.-+
T Consensus 94 ~~~~~~~~---~~~~------------~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 94 YYEQDEGS---LQSF------------FRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHhhhH---Hhhh------------cccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 11111111 1111 000112233678889999999999996543
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.04 E-value=1.2 Score=45.07 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcC---CCCchhHHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCCChhhHHHHH
Q 035503 402 NTLLAAYADLGRSGEASRLFYQMQLEG---ISPNIISWNSVILGFLR---NGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475 (788)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 475 (788)
..++-+|....+++..+++++.+.... +.-....--....++.+ .|+.++|+.++..+....-.+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344555777777777777777776541 11111222233444555 677777777777754444556666666665
Q ss_pred HHH
Q 035503 476 SGL 478 (788)
Q Consensus 476 ~~~ 478 (788)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 544
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.03 E-value=0.26 Score=52.61 Aligned_cols=161 Identities=17% Similarity=0.062 Sum_probs=101.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCH-----hHHHHHHHHhh----ccCcHHHHHHHHHhcHhhcCCCCCcc
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKG-IDPDS-----ITFTNILNACS----HAGLVNEGLELFVGMFSDHQVKPSME 641 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~~p~~~ 641 (788)
...++....-.|+-+.+++++.+..+.+ +.-.. ..|...+..++ .....+.|.++++.+.+.+ |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 4445555555666666666666544321 11111 11222232222 2456677888888776543 6666
Q ss_pred hHH-HHHHHHhhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH-H
Q 035503 642 HFG-CVVNLLSRCGNLDEALRVILTMPC-D-----PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL-S 713 (788)
Q Consensus 642 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-~ 713 (788)
.|. .-+..+...|++++|++.++++.. . -....+-.+++.+...+++++|...+.++.+.+..+...|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 555 556667778888888888886521 1 1233555677778888999999999999998877766666555 4
Q ss_pred HHHHhCCCc-------HHHHHHHHHHHHC
Q 035503 714 NAYAASGRW-------NEVSQVRDIMKEK 735 (788)
Q Consensus 714 ~~~~~~g~~-------~~A~~~~~~~~~~ 735 (788)
-++...|+. ++|..+++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 467888888 8888888876443
No 244
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.98 E-value=0.33 Score=39.89 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=81.5
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 659 (788)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+.|- .....++.+|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc----
Confidence 3467777777777776653 24455555554444444444445555544332222211 111234444444443
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 660 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
+.......+.....+|+-++-.+++..+.+.+..+|..+..++.+|.+.|+..++.++++++-++|.+
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33345556777889999999999999988765567999999999999999999999999999999974
No 245
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.89 E-value=0.041 Score=56.01 Aligned_cols=62 Identities=16% Similarity=0.006 Sum_probs=43.1
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA----HIIGSLLSTCVKSNETELAEYISEHLLQL 701 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (788)
...+..++.+|.+.|++++|+..|+++ ...|+. .+|.+++.+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455567777777777777777777664 445553 24777777777777777777777777776
No 246
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.79 E-value=2.6 Score=42.75 Aligned_cols=125 Identities=12% Similarity=0.098 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (788)
|...++...+..-.+.|..+|-+..+.+ +.++...+.+.+.- ...|+...|..+++.-...-+ .++...+.....+.
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~-~~~~d~~ta~~ifelGl~~f~-d~~~y~~kyl~fLi 477 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEY-YATGDRATAYNIFELGLLKFP-DSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHH-HhcCCcchHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 3334444444444455555555555544 23333333333332 223444455555544444333 22222233344444
Q ss_pred HcCCHHHHHHHHhhCCC---CC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 550 KCGNIHQAKRVFDISPS---KE--LPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
..++-+.|..+|+...+ .+ ...|..+|+--..-|+...+..+=++|.+
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 55555555555542221 11 23455555555555555555555555444
No 247
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.78 E-value=2.8 Score=51.75 Aligned_cols=315 Identities=9% Similarity=-0.043 Sum_probs=173.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHH----HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 035503 403 TLLAAYADLGRSGEASRLFYQM----QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478 (788)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 478 (788)
++..+-.+.+.+.+|...+++- ... .....-|-.+...|...+++|....+...-. . +.. ...-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a----~~s-l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRF-A----DPS-LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-c----Ccc-HHHHHHHH
Confidence 4444556677788888888773 221 1122334444557888888887777665311 1 112 22334456
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (788)
...|++..|...|+.+.+.+ ++....++.++......+.++...-..+-......+.....++.-+.+-.+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 67788888999999888753 33355677777776677777776665555554444233334444455667788888777
Q ss_pred HHHhhCCCCChhhHHHH--HHHHHhCCCHHH--HHHHHHHHHHcCCCCC---------HhHHHHHHHHhhccCcHHHHHH
Q 035503 559 RVFDISPSKELPVYNAM--ISGYAMHGLAVE--ALALFKNLQQKGIDPD---------SITFTNILNACSHAGLVNEGLE 625 (788)
Q Consensus 559 ~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~--A~~~~~~m~~~~~~p~---------~~~~~~ll~~~~~~g~~~~A~~ 625 (788)
.... ..+...|.+. +..+.+..+-+. -.++.+.+++.-+.|- ...|..++....-. +.+.-.+
T Consensus 1539 ~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~ 1614 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIE 1614 (2382)
T ss_pred hhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHH
Confidence 7665 4445555543 333333222221 1123333333211110 01222222211110 0011111
Q ss_pred HHHhcHhhcCCCCCcchHH-H--HHHHHhhcCC---hHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCCHHH
Q 035503 626 LFVGMFSDHQVKPSMEHFG-C--VVNLLSRCGN---LDEALRVILTM----PCDP-----DAHIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 626 ~~~~~~~~~~~~p~~~~~~-~--l~~~~~~~g~---~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~g~~~~ 690 (788)
. ..+..++..+.. . ...-+.+.+. ..+-+-.+++. ...| -..+|...++.++..|+++.
T Consensus 1615 ~------l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1615 E------LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred H------hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 1 113334322211 1 1111112222 22222222221 1122 24589999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 691 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
|....-++.+.. -+.++.-.+..++..|+...|..+++...+....
T Consensus 1689 A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1689 AQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 999988887766 4778999999999999999999999999876653
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=1.1 Score=42.86 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=75.8
Q ss_pred HHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh-hhHH---HHHHHHHhCCCH
Q 035503 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL-PVYN---AMISGYAMHGLA 585 (788)
Q Consensus 510 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~l~~~~~~~g~~ 585 (788)
.......|+...+...++.+....+ .+..+...++.+|...|+.+.|..++..++.... ..|. .-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3345667888888888888888777 4467778899999999999999999998876322 1122 223333333333
Q ss_pred HHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhh
Q 035503 586 VEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSD 633 (788)
Q Consensus 586 ~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 633 (788)
.+...+-.+.-. .| |...-..+...+...|+.++|.+.+-.+++.
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333333322 34 4444455556677777777777666655543
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.65 E-value=1.1 Score=42.23 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCCCCc-----------------hHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 689 ELAEYISEHLLQLEPDNPG-----------------NYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
..|...++..++..|++.- .=...++.|.+.|.|..|..-++.|++.
T Consensus 133 ~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 133 RAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 4556666667777777522 2235678899999999999999999886
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.29 Score=47.09 Aligned_cols=144 Identities=13% Similarity=0.056 Sum_probs=79.7
Q ss_pred HcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHH----HHHhhccCcHHH
Q 035503 550 KCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI----LNACSHAGLVNE 622 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~g~~~~ 622 (788)
..|+..+|-..++++.+ .|..+++.-=.+|...|+.+.-...+++..-. ..||...|..+ ..++...|.+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44666666656665554 45556666666777777777766666666543 23444322221 124556777777
Q ss_pred HHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHH
Q 035503 623 GLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-------AHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 623 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
|.+.-++.. .+.|. .-....+...+--.|+..++.++..+-...-+ ...|... -.+...+.++.|+++
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHH
Confidence 777666554 33332 33444666667777777777777766532111 1122221 123344677777777
Q ss_pred HHHH
Q 035503 695 SEHL 698 (788)
Q Consensus 695 ~~~~ 698 (788)
|.+-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 7653
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.60 E-value=0.76 Score=47.30 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 574 AMISGYAMHGLAVEALALFKNLQQKGID-PDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 574 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
.+..+..+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..++.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4555666666666666666666543211 12234455666666666666666666554
No 252
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.46 E-value=2 Score=44.42 Aligned_cols=150 Identities=9% Similarity=-0.066 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHhhccCcHHHHHHHHHhcHhh-cCCCCCcchH
Q 035503 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP---DSITFTNILNACSHAGLVNEGLELFVGMFSD-HQVKPSMEHF 643 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~p~~~~~ 643 (788)
...+|..++..+.+.|+++.|...+.++...+... .......-....-..|+..+|+..++..... ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34578888888999999999999888877643211 2233333344566778888888888877652 1111111111
Q ss_pred HHHHHHHhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 644 GCVVNLLSRCGNLDEALRV-ILTMPCDPDAHIIGSLLSTCVKS------NETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
..+...+.. ..+..... ........-..++..++..+... ++.+.+...|.++.+.+|+....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 00000000 00000000112333444444444 7889999999999999999888999988887
Q ss_pred HhC
Q 035503 717 AAS 719 (788)
Q Consensus 717 ~~~ 719 (788)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 664
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.21 E-value=0.92 Score=48.48 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH-HhhccCcHHHHHHHHHhcHhhcCCCCCc--chHHHHHHHHhhcCChHH
Q 035503 582 HGLAVEALALFKNLQQKGIDPDSITFTNILN-ACSHAGLVNEGLELFVGMFSDHQVKPSM--EHFGCVVNLLSRCGNLDE 658 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 658 (788)
....+.|.++++.+... -|+...|...-. .+...|++++|++.|+++.....--+.. -.+..++..+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34566777777777664 466555443332 4566777788877777654211111222 223366677777888888
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHH--HHhcCCH-------HHHHHHHHHHHh
Q 035503 659 ALRVILTMP-CDPDAHIIGSLLST--CVKSNET-------ELAEYISEHLLQ 700 (788)
Q Consensus 659 A~~~~~~~~-~~p~~~~~~~l~~~--~~~~g~~-------~~A~~~~~~~~~ 700 (788)
|.+.+..+. .......+...+.+ +...|+. ++|...+.++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888777773 22333333333333 3455666 666666665543
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.18 E-value=0.1 Score=42.61 Aligned_cols=92 Identities=17% Similarity=0.091 Sum_probs=49.5
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCH----HHHHHHHHHHHhcC
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDA----HIIGSLLSTCVKSN 686 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~----~~~~~l~~~~~~~g 686 (788)
....|+.+.|++.|.+.+ .+-| ....|+.-+.++.-+|+.++|++-++++ ... |.. ..+..-+..|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 445566666666666554 3333 2455666666666666666666555554 111 111 12223334466677
Q ss_pred CHHHHHHHHHHHHhcCCCCCch
Q 035503 687 ETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 687 ~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
+.+.|+.-|+.+-++.......
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr~ 151 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFARE 151 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHHH
Confidence 7777777777776665554333
No 255
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.18 E-value=0.86 Score=41.18 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 706 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.++|+.|+..|...|+.++|..+|+..+...+
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 45788889999999999999999987766543
No 256
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.15 E-value=4.3 Score=41.25 Aligned_cols=93 Identities=15% Similarity=0.242 Sum_probs=68.4
Q ss_pred ccccccCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCC
Q 035503 32 KLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDF 111 (788)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 111 (788)
+||..-...|.++.||..|+.-+..+|..++..+.+++|...- +.-+.+|..-+++=....++.....+|.+-+...
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-- 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-- 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--
Confidence 7777767778899999999999999999999999999997532 2233466666666556678888888888887765
Q ss_pred CCCchhHhhHHHHHHhcc
Q 035503 112 FARNEYVETKLVVFYAKC 129 (788)
Q Consensus 112 ~~~~~~~~~~l~~~~~~~ 129 (788)
.. ..+|..-+..-.+-
T Consensus 107 l~--ldLW~lYl~YIRr~ 122 (660)
T COG5107 107 LN--LDLWMLYLEYIRRV 122 (660)
T ss_pred cc--HhHHHHHHHHHHhh
Confidence 33 55555555544433
No 257
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.14 E-value=4 Score=40.91 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=12.2
Q ss_pred hHHHHHhHhcCChHHHHHHHhc
Q 035503 221 SSLIDMYGKCGDLEEARKVFDG 242 (788)
Q Consensus 221 ~~li~~~~~~g~~~~A~~~~~~ 242 (788)
..+...-..+|+.+-|..+++.
T Consensus 4 a~IA~~A~~~GR~~LA~~LL~~ 25 (319)
T PF04840_consen 4 AEIARKAYEEGRPKLATKLLEL 25 (319)
T ss_pred HHHHHHHHHcChHHHHHHHHHc
Confidence 3444455556666666666553
No 258
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.09 E-value=4.8 Score=44.28 Aligned_cols=280 Identities=13% Similarity=0.074 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHH----HH-HHhcCCHHHHHHHHHHhhh-------CCCCCChhhHHHHHHHHHhC
Q 035503 414 SGEASRLFYQMQLEGISPNIISWNSVI----LG-FLRNGQMNEAKDMFLQMQS-------LGVQPNLITWTTLISGLTQN 481 (788)
Q Consensus 414 ~~~a~~~~~~m~~~~~~~~~~~~~~ll----~~-~~~~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~ 481 (788)
...+.++++.....|. ......+. .+ +....+.+.|..+|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4567777777766642 22222222 22 3345677777777777755 33 333445555555554
Q ss_pred C-----CchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc-cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 035503 482 S-----CGNEAILFFQEMLETGIKPSTTTITCALSACTD-VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555 (788)
Q Consensus 482 g-----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 555 (788)
. +.+.|+.++.+.-+.| .|+...+...+.-... ..+...|..+|..+.+.|. . ..+..+..+|..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~--~A~~~la~~y~~----- 372 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-I--LAIYRLALCYEL----- 372 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-h--HHHHHHHHHHHh-----
Confidence 3 3445666666666554 3343333222222222 1234556666666655554 1 111222222211
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC
Q 035503 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635 (788)
Q Consensus 556 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 635 (788)
+.....+...|..++++..+.| .|-...-...+..+.. +.++.+.-.+..+.. .+
T Consensus 373 ----------------------G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g 427 (552)
T KOG1550|consen 373 ----------------------GLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LG 427 (552)
T ss_pred ----------------------CCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hh
Confidence 0112234555666666655555 2322222222223333 444444444433321 12
Q ss_pred CCCCcchHHHHHHH---Hhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 035503 636 VKPSMEHFGCVVNL---LSR----CGNLDEALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 636 ~~p~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~ 704 (788)
..--...-..+... ... ..+.+.+...+.+....-+......+...|.. ..+++.|...|.++-...
T Consensus 428 ~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-- 505 (552)
T KOG1550|consen 428 YEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-- 505 (552)
T ss_pred hhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--
Confidence 11110000001100 000 22455566666666555555566666655432 347888888888887766
Q ss_pred CCchHHHHHHHHHhC---CCcHHHHHHHHHHHHCC
Q 035503 705 NPGNYVALSNAYAAS---GRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 705 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 736 (788)
+...++++.++... .++..|.++++...+.+
T Consensus 506 -~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 506 -AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred -hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 77888888888762 12678888888776644
No 259
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.03 E-value=7.5 Score=43.41 Aligned_cols=54 Identities=11% Similarity=-0.047 Sum_probs=29.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 035503 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498 (788)
Q Consensus 440 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (788)
+..+.+.+++......+.. .+.+...-.....+....|+.++|......+-..|
T Consensus 106 l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 106 VNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 3344556666655552211 12344444555666777777776766666665443
No 260
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.99 E-value=0.18 Score=44.20 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHh----hcCCCCCcchH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS----DHQVKPSMEHF 643 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 643 (788)
...++..+...|++++|+.+++++.... +-|...+..++.+|...|+..+|.+.|+++.+ +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4556667777888888888888887753 34677788888888888888888888876532 45777776543
No 261
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.97 E-value=6 Score=42.00 Aligned_cols=179 Identities=12% Similarity=0.040 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKE---LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA- 613 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 613 (788)
...|...+..-...|+.+.+.-.|++..-+- ...|-..+.-....|+.+-|-.++....+-- .|+......+-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHH
Confidence 4466677777788899999988888776432 2356666655556688888887777755543 2333222222222
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHH---HHHHhC-C--CCCCHH--HHHHHHHH-HH
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEAL---RVILTM-P--CDPDAH--IIGSLLST-CV 683 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~--~~p~~~--~~~~l~~~-~~ 683 (788)
+...|+++.|..+++.+..++ |+ ...-..-+....+.|..+.+. +++... + ..+... .+....+. +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 556789999999999997653 65 333345567778889988888 444444 2 222221 22222332 55
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 684 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
..++.+.|..++.++.+..|++...|..+.+....++
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999999988776655
No 262
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.94 E-value=4.3 Score=40.12 Aligned_cols=18 Identities=22% Similarity=-0.008 Sum_probs=12.5
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 035503 682 CVKSNETELAEYISEHLL 699 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~ 699 (788)
+.+.++++.|...|+-++
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 456777777777777554
No 263
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=7.5 Score=42.95 Aligned_cols=53 Identities=2% Similarity=0.058 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
.-++..+.+..+.+.++.+.+...+.++..|..++..+.+.+..+.-.+...+
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 34667788888999999999988888899999999999988866655444444
No 264
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.87 E-value=0.22 Score=46.72 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=63.6
Q ss_pred HHHHHhcc--cCChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 387 KQVFNSII--LRDVVLWNTLLAAYADL-----GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 387 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
...|.... ++|-.+|-..+..+... +.++-.-..++.|.+.|+..|..+|+.|++.+-+..-... .+|
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvf--- 128 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVF--- 128 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHH---
Confidence 34455554 45667777777666543 4555566677788888999999999988887654332110 011
Q ss_pred hhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 035503 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517 (788)
Q Consensus 460 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 517 (788)
....-.|-+ +-+-++.++++|...|+.||..+-..++.++.+.+
T Consensus 129 ------------Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 129 ------------QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred ------------HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 111111111 12335566666666666666666666666665544
No 265
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.68 E-value=0.37 Score=39.86 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC-CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 669 DPDAHIIGSLLSTCVKSN---ETELAEYISEHLLQ-LEPD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+...+-.++.+++..+. +..+++.+++.+++ -.|. .....+.|+-.+++.|+|++++++.+..++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 344445556666665553 55677888888886 4454 45566677888888888888888888877643
No 266
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.62 E-value=1.4 Score=39.38 Aligned_cols=114 Identities=11% Similarity=0.074 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHH--HHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-----HHHHHHhhcCChHHH
Q 035503 587 EALALFKNLQQKGIDPDSITFTN--ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-----CVVNLLSRCGNLDEA 659 (788)
Q Consensus 587 ~A~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A 659 (788)
+.....+++...+......++.. +...+...|++++|...++..+.. |..+.+. .|+......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555555555431222222222 233467788888888888766522 2222222 667778888889999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 660 LRVILTMPCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 660 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+..++....+. .......-+.++...|+-++|+..|+++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 88888764221 2223344456788888888888888888887755
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.48 E-value=0.7 Score=48.58 Aligned_cols=44 Identities=27% Similarity=0.305 Sum_probs=21.0
Q ss_pred hhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035503 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 697 (788)
.+.|+++.|.+..++.. +...|..|+.....+|+++.|+.+|++
T Consensus 329 l~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 329 LQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34555555544444332 344555555555555555555555544
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.33 E-value=0.08 Score=32.91 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
+|..|+.+|.+.|+|++|+.++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888888888888888854
No 269
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.32 E-value=0.08 Score=32.34 Aligned_cols=31 Identities=26% Similarity=0.140 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+|..++..|...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666777777777777777777777764
No 270
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.22 E-value=14 Score=42.84 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035503 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (788)
..|+.-+..+++.-+|-++..+...+|. .....+++...+++|.+.....-
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSDPE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcCHH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 3555666666666666666666543332 12233455556666666555443
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.09 E-value=0.095 Score=34.43 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=29.4
Q ss_pred CchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 706 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
|.++..++.+|.+.|++++|.++++++++..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 457899999999999999999999999987653
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.08 E-value=0.083 Score=32.83 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQL 701 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (788)
+|..|+.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678899999999999999999996644
No 273
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.02 E-value=0.56 Score=39.38 Aligned_cols=48 Identities=8% Similarity=0.004 Sum_probs=26.1
Q ss_pred CCcchHHHHHHHHHHCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHh
Q 035503 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSAS 293 (788)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~ 293 (788)
|+.....+++.+|+.+|++..|+++++...+. +++.+..+|..|+.-+
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34455555566666666666666665555443 4555555555555443
No 274
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.91 E-value=1.9 Score=37.38 Aligned_cols=43 Identities=19% Similarity=0.099 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhC
Q 035503 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481 (788)
Q Consensus 438 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 481 (788)
.++..+...+.......+++.+...+. .+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344455555556666666666554442 3555566666666554
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.86 E-value=1.5 Score=45.16 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=27.8
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035503 645 CVVNLLSRCGNLDEALRVILTMP-CDP---DAHIIGSLLSTCVKSNETELAEYISEHL 698 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (788)
.++.++.+.|+.+||.+.+.++- ..| ...+..+|+..+...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 45555555566666655555552 111 1224455555555555555555555553
No 276
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.83 E-value=0.67 Score=38.92 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=23.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHh-hhCCCCCChhhHHHHHH
Q 035503 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLIS 476 (788)
Q Consensus 430 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-~~~g~~~~~~~~~~li~ 476 (788)
.|+..+..+++.+|+..|++..|.++.+.. ...+++.+...|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345555555555555555555555555554 33344444444444443
No 277
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=13 Score=40.98 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=52.6
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHH
Q 035503 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404 (788)
Q Consensus 325 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 404 (788)
++.+.+.+.+++|+.+-+.....-... .-..+...+++.+.-.|++++|-...-.|...+..-|...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~-------------~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~ 429 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERF-------------VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELW 429 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcccc-------------chHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHH
Confidence 567788889999998887764432210 0122556667777777888888887777777677777666
Q ss_pred HHHHHHcCChhH
Q 035503 405 LAAYADLGRSGE 416 (788)
Q Consensus 405 ~~~~~~~g~~~~ 416 (788)
+..+...++...
T Consensus 430 V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 430 VFKFAELDQLTD 441 (846)
T ss_pred HHHhccccccch
Confidence 666666665544
No 278
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.78 E-value=0.13 Score=49.56 Aligned_cols=109 Identities=15% Similarity=0.029 Sum_probs=77.2
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcC
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTMP-C-DPDAHIIGSLLSTCVKSN 686 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g 686 (788)
-.+-|.+.|.+++|+..|.+.+ .+.| ++..+..-+.+|.+..++..|..-.+.+- . +--...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4667999999999999999876 5667 67777788899999999988876665542 1 111234444445555668
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHH
Q 035503 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725 (788)
Q Consensus 687 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 725 (788)
+..+|.+-++.+++++|++.. |-..|.+.....|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 999999999999999999543 33444444443333
No 279
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.71 E-value=7 Score=43.58 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=34.2
Q ss_pred HHHHHHhccCChHHHHHHhccCC---CCCcccHHHHHHHHHcCCC-------chHHHHHHHHHHHCCCCCCcc
Q 035503 121 KLVVFYAKCDALDVASRLFCRLR---VKNVFSWAAIIGLNCRVGL-------SEKALIGFVEMQEDGVSPDNF 183 (788)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~ 183 (788)
.++-.|.|+|++++|.++..... ......+...+..|....+ -+.....|.+..+.....|++
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 45666789999999999983322 2334456666777655422 224445566555443323444
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.65 E-value=0.58 Score=45.18 Aligned_cols=161 Identities=12% Similarity=0.008 Sum_probs=120.6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH----HHHHHHhhcC
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG----CVVNLLSRCG 654 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g 654 (788)
..-.|+..+|...++++++. .+.|...+...=++|...|+.+.-...+++++- .-.|+.+.|. .++-++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34578889999999998875 466777777777889999999998888888864 3356766554 4455567899
Q ss_pred ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhCCCcHHHHHH
Q 035503 655 NLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD----NPGNYVALSNAYAASGRWNEVSQV 728 (788)
Q Consensus 655 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~ 728 (788)
-+++|.+..++. . .+.|.-...++...+...|++.++.++.++--..-.+ -..-|...+-.|.+.+.++.|+.+
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999888 3 3455566677777888899999999987765432222 234577888889999999999999
Q ss_pred HHHHHHCCCccCCc
Q 035503 729 RDIMKEKGLRKNPG 742 (788)
Q Consensus 729 ~~~~~~~~~~~~~~ 742 (788)
|++=+-+...+..+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 99865555555444
No 281
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=6.1 Score=36.76 Aligned_cols=56 Identities=7% Similarity=0.052 Sum_probs=28.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCC--CCCcchHHHHHHHHhhcCChHHHHHHH
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQV--KPSMEHFGCVVNLLSRCGNLDEALRVI 663 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (788)
|...|-.+....++..|...++...+..++ +.+..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 444455566666777777777654222111 11233444555544 456666665554
No 282
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.57 E-value=12 Score=39.91 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=79.0
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHH
Q 035503 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF-VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224 (788)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 224 (788)
+...|..+|.---...+.+.+..++..+... .|-.. .|......=.+.|..+.+.++|+..+. +++..+..|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4445666666555555555566666666543 34333 222233333466777777777777665 3466666776666
Q ss_pred HHhHh-cCChHHHHHHHhcCCC------CCcchHHHHHHHHHHCCChhHHHHHHHHHHHc
Q 035503 225 DMYGK-CGDLEEARKVFDGMIA------RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277 (788)
Q Consensus 225 ~~~~~-~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 277 (788)
..+.. .|+.+.-...|+.... .....|...|.--...+++.....+++..++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 55443 4677777777776532 14456777777777778888888888888764
No 283
>PRK10941 hypothetical protein; Provisional
Probab=93.53 E-value=0.6 Score=45.19 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEE
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (788)
..+++-.+|.+.++++.|.++.+.++.+.|+++.-+...|.+|.+.|.+..|..-++..++.-+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~--------------- 247 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE--------------- 247 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---------------
Confidence 45667778999999999999999999999999999999999999999999999999998876532
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHH
Q 035503 754 VFVACDRSHPKTEEIYATLALLGMHV 779 (788)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 779 (788)
-|.+..|..++.++..+.
T Consensus 248 --------dp~a~~ik~ql~~l~~~~ 265 (269)
T PRK10941 248 --------DPISEMIRAQIHSIEQKQ 265 (269)
T ss_pred --------chhHHHHHHHHHHHhhcC
Confidence 466777777777766543
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.44 E-value=0.26 Score=47.53 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=64.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhh
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSR 652 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 652 (788)
-.+-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..-...++. +.- -...|..-+.+-..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---Ld~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---LDKLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHH
Confidence 46789999999999999999766 456 889999999999999999888777766642 111 12334444444444
Q ss_pred cCChHHHHHHHHhC-CCCCCH
Q 035503 653 CGNLDEALRVILTM-PCDPDA 672 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~~p~~ 672 (788)
.|+..||.+-++.. ..+|+.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HhhHHHHHHhHHHHHhhCccc
Confidence 56666666655554 456664
No 285
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.39 E-value=1.9 Score=45.48 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 035503 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547 (788)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (788)
....+.++.-+.+.|.++.|+++.++ +. .-.....+.|+++.|.++.+.. .+...|..|++.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 33456666666667777777665322 11 1122334455555555443221 345566677777
Q ss_pred HHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 548 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
..++|+++-|.+.|.+... |..|.-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..+++
T Consensus 357 AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777777766554 56666666666776665565555544431 222333344456665555555
Q ss_pred H
Q 035503 628 V 628 (788)
Q Consensus 628 ~ 628 (788)
.
T Consensus 426 ~ 426 (443)
T PF04053_consen 426 I 426 (443)
T ss_dssp H
T ss_pred H
Confidence 4
No 286
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=6.4 Score=36.40 Aligned_cols=99 Identities=10% Similarity=0.065 Sum_probs=57.3
Q ss_pred CcHHHHHHHHHhcHhhcCCCCCcc----hHHHHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHH-----HHHHHHhc
Q 035503 618 GLVNEGLELFVGMFSDHQVKPSME----HFGCVVNLLSRCGNLDEALRVILTMP---CDPDAHIIGS-----LLSTCVKS 685 (788)
Q Consensus 618 g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~-----l~~~~~~~ 685 (788)
.+++.|+.+|+..-.-+....... .+..++..-...+++.+|+++|++.. ...+..-|.. -...|.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 566666777766644333322222 22234444567889999999998872 2222222222 12234333
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCc--hHHHHHHHH
Q 035503 686 -NETELAEYISEHLLQLEPDNPG--NYVALSNAY 716 (788)
Q Consensus 686 -g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~ 716 (788)
.|.-.+...+++..+++|.... -+..|-.+.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 7888889999999999998444 344444443
No 287
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.13 E-value=5.2 Score=34.53 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 035503 250 AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296 (788)
Q Consensus 250 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 296 (788)
....++..+...+.+.....+++.+...+ ..+...++.++..+++.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 33445555555566666666666665554 24444555555555443
No 288
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.08 E-value=0.14 Score=31.22 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=26.6
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
..+..++.+|...|++++|+..+++.++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 5788999999999999999999999887543
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.03 E-value=5.8 Score=34.74 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=74.4
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH--HHHHHHhhcCC
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDPDSI-TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG--CVVNLLSRCGN 655 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~ 655 (788)
+.+.+..++|+.-|..+...|...-+. ...-......+.|+...|...|+++-.+..++.-..-.. .-..++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356677788888888877765432111 111122235677888888888888764432221111111 23345667888
Q ss_pred hHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 656 LDEALRVILTMPCDPD---AHIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 656 ~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
+++....++.+..+.+ +..-..|+-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8887777777643322 23456677777788888888888888776
No 290
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=18 Score=40.20 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCCh-hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 035503 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV-VLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430 (788)
Q Consensus 352 ~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 430 (788)
....+..+.+.|..+......|+.+|.+.++.++-.++.+....... .-....+..+.+.+-.++|.-+-.....
T Consensus 416 Lt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~---- 491 (933)
T KOG2114|consen 416 LTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK---- 491 (933)
T ss_pred HHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc----
Confidence 34455556666666667788899999999999998888877652211 1256677777777777777665544322
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 035503 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460 (788)
Q Consensus 431 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (788)
+..... -.+-..+++++|++.+..+.
T Consensus 492 -he~vl~---ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 492 -HEWVLD---ILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred -CHHHHH---HHHHHhcCHHHHHHHHhcCC
Confidence 222222 23445788999999998773
No 291
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.83 E-value=0.21 Score=43.85 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
++|+.-+++++.++|+...++++++++|...+
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 44555555555556665555555555555443
No 292
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.80 E-value=14 Score=38.48 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=36.9
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHHCC-CCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHc
Q 035503 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212 (788)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 212 (788)
|+..|...+.-+-+.+.+.+.-.+|..|.... ..||...+.+.- -+...-+++.|+.++...++.+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHHhhcC
Confidence 66667777776666666777777777776643 223332222221 1222233666677666666654
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.72 E-value=8.9 Score=36.12 Aligned_cols=108 Identities=18% Similarity=0.290 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHh-----hccCcHHHHHHHHHhcHhhcCC--CCCcc-
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNAC-----SHAGLVNEGLELFVGMFSDHQV--KPSME- 641 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~~~~~~~~~~--~p~~~- 641 (788)
.|..-|..|..+++-..-..+|++.+.-. --|.+.. ..+++-| .+.|.+++|..-|=++.+.+.- .|...
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRtt 271 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT 271 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhH
Confidence 45555666666666666666666654321 1233322 2334433 3456666664433333333322 22221
Q ss_pred --hHHHHHHHHhhcCC----hHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 035503 642 --HFGCVVNLLSRCGN----LDEALRVILTMPCDPDAHIIGSLLSTCV 683 (788)
Q Consensus 642 --~~~~l~~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 683 (788)
-|..|++++.+.|- -.||.. ...+|...+...++.+|.
T Consensus 272 CLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ 315 (440)
T KOG1464|consen 272 CLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQ 315 (440)
T ss_pred HHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHh
Confidence 23456666666551 122210 012345556666666663
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.63 E-value=0.16 Score=30.91 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=26.8
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.+|..+|.+|...|++++|+..++++++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 5789999999999999999999999987653
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.62 E-value=0.15 Score=31.11 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=23.8
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 035503 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558 (788)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (788)
++++++..| .+..+|+.++..|...|++++|+
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 456666676 67778888888888888887775
No 296
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.55 E-value=1.4 Score=41.59 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=62.4
Q ss_pred CccccHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCch----------------hHHH
Q 035503 42 SLYKSYFHQISSLSK-----EKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMY----------------TGQQ 100 (788)
Q Consensus 42 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~----------------~a~~ 100 (788)
.+-.||-+.+..+.+ ++.++---..++.|.+.|+.-|-.+|..||..+-+..... =++.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 444467666666643 4566666778899999999999999999999986543221 1666
Q ss_pred HHHHHHHhCCCCCCchhHhhHHHHHHhccCC
Q 035503 101 IHARILKNGDFFARNEYVETKLVVFYAKCDA 131 (788)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (788)
++++|..+| .-+|-++...|++++++.+-
T Consensus 145 vLeqME~hG--VmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHG--VMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcC--CCCchHHHHHHHHHhccccc
Confidence 677777777 67777777777777666654
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.46 E-value=26 Score=40.78 Aligned_cols=111 Identities=21% Similarity=0.248 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH--HHHHHHHhhcc
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT--FTNILNACSHA 617 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~ 617 (788)
+|...++-+...+++++|.-.|+..-+ ...-+.+|...|++.+|+.+..++.. .-+... -..|..-+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 344444555556666666666665433 23345566667777777777666532 112211 24455667778
Q ss_pred CcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 035503 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667 (788)
Q Consensus 618 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 667 (788)
+++-+|-++..+...+ | ...+..|++...+++|+.+.....
T Consensus 1013 ~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 8888887777665421 2 234566778888888887776664
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.37 E-value=3.7 Score=35.78 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=51.7
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHH
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTMP-CDPDAHIIGSLLSTCVKSNETELA 691 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A 691 (788)
-...++.+++..++..+. -+.|...... .-+..+.+.|++.+|+.+++++. ..|....-..|+..|....+-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 445667777777777764 5566644333 55566777888888888888873 334445555666655544332223
Q ss_pred HHHHHHHHhcCCC
Q 035503 692 EYISEHLLQLEPD 704 (788)
Q Consensus 692 ~~~~~~~~~~~p~ 704 (788)
....+.+++..|+
T Consensus 97 r~~A~evle~~~d 109 (160)
T PF09613_consen 97 RRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHhcCCC
Confidence 3344445554443
No 299
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.37 E-value=8.6 Score=35.10 Aligned_cols=182 Identities=10% Similarity=-0.029 Sum_probs=109.0
Q ss_pred hhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh-hHHHH--HHHHHhCCCHHHHH
Q 035503 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP-VYNAM--ISGYAMHGLAVEAL 589 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~A~ 589 (788)
|-..|-+..|.-=+.+.+...| .-+.++|-|+-.+...|+++.|.+.|+...+-|+. -|..+ .-++...|++.-|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 4455666667777777777777 66788999999999999999999999988876553 22222 22344578999888
Q ss_pred HHHHHHHHcCC-CCCHhHHHHHHHHhhccCcHHHHHHHH-HhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhC
Q 035503 590 ALFKNLQQKGI-DPDSITFTNILNACSHAGLVNEGLELF-VGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 590 ~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~-~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
+-+.+.-+... .|-...|..+. ...-++.+|..-+ ++.. + .+.+-|. .++..|.-.=..+.+.+-+..-
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~ 225 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKAD 225 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhh
Confidence 87777655431 12122222222 3444666665433 3332 2 3334444 3444443332333333333332
Q ss_pred CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 035503 667 PCDP------DAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703 (788)
Q Consensus 667 ~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 703 (788)
..+. -..++.-++.-+...|+.++|..+|+-++..+-
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 2111 123566677778889999999999998887543
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.27 E-value=4.1 Score=35.46 Aligned_cols=50 Identities=10% Similarity=-0.107 Sum_probs=24.3
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 035503 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566 (788)
Q Consensus 516 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (788)
.++.+.+..++.-+.-..| ....+-..-+..+...|+|.+|+.+|+.+..
T Consensus 23 ~~~~~D~e~lL~ALrvLRP-~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRP-EFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred cCChHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3444444444444444444 2233333334445555666666666655544
No 301
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.17 E-value=7.5 Score=34.97 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=50.7
Q ss_pred HhhccCchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhh--HHHHHHHHHhCCCHHH
Q 035503 512 ACTDVASLRNGRAIHGYLIRHDLC--LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV--YNAMISGYAMHGLAVE 587 (788)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~ 587 (788)
.+...+++++|...++..+...-. ....+-..|+......|++|+|+..++....++-.. ...-.+.+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 455566666666666655543211 112223345666667777777777777666554332 2234556677777777
Q ss_pred HHHHHHHHHHcC
Q 035503 588 ALALFKNLQQKG 599 (788)
Q Consensus 588 A~~~~~~m~~~~ 599 (788)
|..-|++.++.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 777777766654
No 302
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=3.2 Score=38.28 Aligned_cols=93 Identities=10% Similarity=-0.031 Sum_probs=52.9
Q ss_pred HHHHHHHhhc-CChHHHHHHHHhCC-----CCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCCCCchHH----
Q 035503 644 GCVVNLLSRC-GNLDEALRVILTMP-----CDPDAHIIGSLL---STCVKSNETELAEYISEHLLQLEPDNPGNYV---- 710 (788)
Q Consensus 644 ~~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---- 710 (788)
..++..|-.. .+++.|+..|+.+. .+.+...-..++ ..-...+++.+|+.+|+++..-.-+++-.-+
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence 3555666443 67777777777761 122222222233 3345678999999999999876665543322
Q ss_pred ---HHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 711 ---ALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 711 ---~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.-+..+.-..+.-.+...+++-.+..
T Consensus 197 yflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 22333344456556666666555443
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.02 E-value=5.9 Score=40.87 Aligned_cols=67 Identities=19% Similarity=0.130 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD----NPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
....+|..++..+++.|+++.|...+.++...++. .+.+...-+.++...|+..+|...++......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999986532 46778888999999999999999999888743
No 304
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.78 E-value=6.8 Score=32.61 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=24.6
Q ss_pred HHHHHHcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 035503 545 VDMYAKCGNIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599 (788)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 599 (788)
++.+..+|+-+.-.+++..+. +.++...-.+..+|.+.|+..++-+++.+.-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444444444444444432 2333444445555555555555555555555554
No 305
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.76 E-value=45 Score=42.12 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=70.3
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--C--------CCCHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP--C--------DPDAHI 674 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~--------~p~~~~ 674 (788)
.+|....+....+|+++.|....-.+.+. + -+..+...+..+...|+...|+.++++.- . .+.+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~-r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKES-R---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhc-c---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 45666677777799999988777666332 2 34566677888899999999999887761 1 111222
Q ss_pred HHHHHH--------HH-HhcCCH--HHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 675 IGSLLS--------TC-VKSNET--ELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 675 ~~~l~~--------~~-~~~g~~--~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
-+..+. -| ...|+. +.-++.|..+.+..|.....|+.++..|.
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence 222111 12 223443 45678899999999987777777775443
No 306
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.64 E-value=0.36 Score=28.98 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
.++.++...|++++|+..++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444444555555555555555555554
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.10 E-value=17 Score=35.92 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=86.2
Q ss_pred hhcCChHHHHHHHHhccc----CChh-------HHHHHHHHHHHcC-ChhHHHHHHHHHHHc--------CCCCch----
Q 035503 378 AKCERIDNAKQVFNSIIL----RDVV-------LWNTLLAAYADLG-RSGEASRLFYQMQLE--------GISPNI---- 433 (788)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~----~~~~-------~~~~l~~~~~~~g-~~~~a~~~~~~m~~~--------~~~~~~---- 433 (788)
.+.|+.+.|..++.+... .++. .+-.+.......+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 356788888888877642 1221 2233334444556 888888888776543 122332
Q ss_pred -hHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHH
Q 035503 434 -ISWNSVILGFLRNGQMNE---AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509 (788)
Q Consensus 434 -~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (788)
.++..++.+|...+..+. |..+++.+... .+-.+..+-.-+..+.+.++.+++.+.+.+|+.. +.-....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 356677777888776554 55555555333 1212444545566667788888999999998875 22133344444
Q ss_pred HHHhhc--cCchHHHHHHHHHHHHcCC
Q 035503 510 LSACTD--VASLRNGRAIHGYLIRHDL 534 (788)
Q Consensus 510 l~~~~~--~~~~~~a~~~~~~~~~~~~ 534 (788)
+..+.. ......+...+..++....
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~ 188 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRF 188 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHh
Confidence 443311 1223445555555444333
No 308
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.02 E-value=1.7 Score=40.18 Aligned_cols=62 Identities=18% Similarity=0.043 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+.+....+...|++-++++....++..+|++..+|+..+.++...=+.++|..-|.++++..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33444455677999999999999999999999999999999999999999999999988765
No 309
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.96 E-value=1.1 Score=43.25 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
++..++..+...|+++.++..+++.+..+|-+...|..+..+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5556677777888888888888888888888888888888888888888888888888765
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.58 E-value=2.1 Score=38.24 Aligned_cols=101 Identities=11% Similarity=0.050 Sum_probs=61.9
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKPS-----MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSN 686 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g 686 (788)
+...|++++|..-|.+++.. .++. ...|..-+.++.+.+.++.|++-..++ ...|.. ..+..-+.+|-+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45666777777666666532 1221 123445556667777777777666555 344432 23333345677778
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 687 ETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 687 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
.++.|+.-|+++++.+|....+-...+.+-
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 889999999999999998655555554443
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.43 E-value=1.6 Score=37.22 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=30.1
Q ss_pred cCChHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 653 CGNLDEALRVILTMP-CDPDAHIIGS-LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 653 ~g~~~~A~~~~~~~~-~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
.++++++..+++.+. ..|+...... -+..+...|++++|+.+++.+.+-.|..+..--.++.++...|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 455555555555541 2222221111 12234445555555555555554444444444444444444443
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.19 E-value=0.3 Score=29.36 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++..++.+|.+.|++++|.+.|+++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 57789999999999999999999998764
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.86 E-value=0.098 Score=45.68 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=51.2
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCc
Q 035503 84 ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163 (788)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 163 (788)
.+++.+.+.+.+......++.+...+ ...++...+.++..|++.++.+...+.++.... .....++..|.+.|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKEN--KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTS--TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcc--cccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 34555556666666667777776655 456677777777777777666666666663332 3334456666666666
Q ss_pred hHHHHHHHHH
Q 035503 164 EKALIGFVEM 173 (788)
Q Consensus 164 ~~A~~~~~~m 173 (788)
++|.-+|.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 6666666554
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.82 E-value=0.42 Score=26.98 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=18.7
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHH
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~ 730 (788)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888887765
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.79 E-value=0.18 Score=44.07 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=34.1
Q ss_pred HHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhc
Q 035503 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344 (788)
Q Consensus 289 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 344 (788)
++..+.+.+.++.....++.+...+...+....+.++..|++.++.+...++++..
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~ 68 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS 68 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc
Confidence 34455555666666666666666555555666677777777776666666666643
No 316
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.74 E-value=1.7 Score=40.62 Aligned_cols=64 Identities=13% Similarity=0.002 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHH-------HHHHHHHHHhcC--CC----CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 673 HIIGSLLSTCVKSNETEL-------AEYISEHLLQLE--PD----NPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..+..+++.|...|+.+. |...|+++++.+ |. .....+.+|.++.+.|++++|.+.|.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 356667777777777544 555555555433 22 24567789999999999999999999998765
No 317
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.71 E-value=0.29 Score=47.54 Aligned_cols=91 Identities=15% Similarity=0.230 Sum_probs=71.1
Q ss_pred hcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHH
Q 035503 652 RCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR 729 (788)
Q Consensus 652 ~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 729 (788)
..|.+++|++.+... +..|.. ..+..-..++.+.++...|++-+..+++++|+....|-.-+.+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 456677777776665 344433 344445566778888889999999999999999999999999999999999999999
Q ss_pred HHHHHCCCccCCc
Q 035503 730 DIMKEKGLRKNPG 742 (788)
Q Consensus 730 ~~~~~~~~~~~~~ 742 (788)
....+.+.....+
T Consensus 206 ~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 206 ALACKLDYDEANS 218 (377)
T ss_pred HHHHhccccHHHH
Confidence 9999988765544
No 318
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.69 E-value=0.66 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.7
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+|..++.+|...|++++|...|++.++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 478899999999999999999999987643
No 319
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.62 E-value=14 Score=32.54 Aligned_cols=120 Identities=10% Similarity=0.028 Sum_probs=57.0
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChh---HHHHHHHHHHHcCCH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTT-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP---IVTSLVDMYAKCGNI 554 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 554 (788)
.+.+..++|+.-|.++.+.|...-+. ............|+...|...|+++-+..+.|... .-..-..++...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455556666666665544322111 11112222344555555555555555544333222 111122334456666
Q ss_pred HHHHHHHhhCCCCCh----hhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 035503 555 HQAKRVFDISPSKEL----PVYNAMISGYAMHGLAVEALALFKNLQQK 598 (788)
Q Consensus 555 ~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 598 (788)
+....-.+.+..+.. ..-..|.-+-.+.|++..|.++|.++...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666555543211 12234555556667777777777766553
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.55 E-value=2.2 Score=29.22 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.++.++-.+.+.|++++|.++.+.+++..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 46788999999999999999999998754
No 321
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.54 E-value=14 Score=32.66 Aligned_cols=54 Identities=15% Similarity=0.298 Sum_probs=35.3
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035503 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510 (788)
Q Consensus 453 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (788)
.++++.+.+.+++|+...|..+++.+.+.|++.. +.+++..++-+|.......+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHH
Confidence 3455666677788888888888888888887544 44455555666665544433
No 322
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.47 E-value=40 Score=37.71 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=20.7
Q ss_pred HHHHhHhcCChHHHHHHHhcC---CCCCcchHHHHHHHHHHC
Q 035503 223 LIDMYGKCGDLEEARKVFDGM---IARNVVAWNSMIVGYVQN 261 (788)
Q Consensus 223 li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~ 261 (788)
+|-.+.|+|++++|.++..+. ..+....+-..+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 445566777777777777322 223334455555655554
No 323
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.26 E-value=2.6 Score=37.27 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=47.1
Q ss_pred HHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035503 621 NEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699 (788)
Q Consensus 621 ~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (788)
++|+.-|++++ .+.|+ ..++.+++.+|...+.+ .||.. .....+++|...|+++.
T Consensus 52 edAisK~eeAL---~I~P~~hdAlw~lGnA~ts~A~l------------~~d~~---------~A~~~F~kA~~~FqkAv 107 (186)
T PF06552_consen 52 EDAISKFEEAL---KINPNKHDALWCLGNAYTSLAFL------------TPDTA---------EAEEYFEKATEYFQKAV 107 (186)
T ss_dssp HHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHH---------------HH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHhh------------cCChH---------HHHHHHHHHHHHHHHHH
Confidence 34444444444 45677 46677777777554421 11110 01123578888999999
Q ss_pred hcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 700 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
+.+|++......|-.. ++|-.+..++.+.+..
T Consensus 108 ~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 108 DEDPNNELYRKSLEMA-------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS-
T ss_pred hcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHhh
Confidence 9999965555444332 3566677777666543
No 324
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.17 E-value=15 Score=32.49 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=25.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
.+++.+...|++-+|+++.+.... .+......++.+..+.++...-..+|+-.
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455556666666666554321 11122234555555555555444444444
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.02 E-value=0.88 Score=29.15 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
+++.++..|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444444444444444444444443
No 326
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.62 E-value=34 Score=35.78 Aligned_cols=100 Identities=9% Similarity=0.072 Sum_probs=63.0
Q ss_pred CCchhHH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHH--hCCCchHHHHHHHHHHhCCCCCCHHHH
Q 035503 430 SPNIISW-NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT--QNSCGNEAILFFQEMLETGIKPSTTTI 506 (788)
Q Consensus 430 ~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~ 506 (788)
.|+..|+ +.++.-+.+.|-..+|...+..+... .+|+...|..+|..-. ..-+...+..+|+.|... +-.|+..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence 4555444 45666677777777777777777554 3556677776665322 222366667777777653 22666666
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHH
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIR 531 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~ 531 (788)
...+.--...|..+.+-.++.++.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 6666666677777777777766655
No 327
>PRK09687 putative lyase; Provisional
Probab=88.58 E-value=27 Score=34.48 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=20.3
Q ss_pred ChhhHHHHHHHHHhCCCc----hHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 035503 467 NLITWTTLISGLTQNSCG----NEAILFFQEMLETGIKPSTTTITCALSACT 514 (788)
Q Consensus 467 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 514 (788)
|...-...+.++.+.|+. .++...+..+... .|+...-...+.++.
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG 116 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATG 116 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHh
Confidence 344444445555555542 3455555555321 344444333444333
No 328
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.47 E-value=0.87 Score=26.63 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
|..++..+...|+++.|+..++++++.+|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444555555556666666666666555553
No 329
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.19 E-value=1.2 Score=40.94 Aligned_cols=85 Identities=8% Similarity=0.025 Sum_probs=47.6
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTM-PCDPDAHI-IGSLLSTCVKSNETE 689 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~ 689 (788)
.|.....++.|+..|.+.+ -+.|+..+|. .-+..+.+..+++.+..--.++ ...|+..- ..-++........++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3556666777777776665 5566665543 5555555666666555443333 34444432 333444455556666
Q ss_pred HHHHHHHHHHh
Q 035503 690 LAEYISEHLLQ 700 (788)
Q Consensus 690 ~A~~~~~~~~~ 700 (788)
.|+..++++..
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 66666666644
No 330
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.15 E-value=4.9 Score=36.33 Aligned_cols=96 Identities=15% Similarity=0.029 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH--HH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG--CV 646 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~l 646 (788)
.+..++..|++.|+.++|++.|.++.+....+.. ..+..++..+...+++..+..+..++........+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666666666666677766666665433332 3345556666666666666666665533211111111111 11
Q ss_pred --HHHHhhcCChHHHHHHHHhC
Q 035503 647 --VNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 647 --~~~~~~~g~~~~A~~~~~~~ 666 (788)
+-.+...|++.+|.+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 12234567777777777666
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.08 E-value=0.89 Score=29.11 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.++.+|+.+|...|++++|..++++..+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467899999999999999999999987643
No 332
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.08 E-value=50 Score=37.07 Aligned_cols=183 Identities=10% Similarity=0.055 Sum_probs=98.0
Q ss_pred HHHHHHHHHH-hCCCC--chhHHHHHHHHHH-hcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHH
Q 035503 302 GKQAHAVAVI-NGMEL--DNVLGSSIINFYS-KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377 (788)
Q Consensus 302 a~~~~~~~~~-~~~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~ 377 (788)
|.+.++.+.+ ..+.| +..++-.+...+. ...+++.|+..+++....... +.+.. ..-.....++..+
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d-------~k~~~~~ll~~i~ 110 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTD-------LKFRCQFLLARIY 110 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHH-------HHHHHHHHHHHHH
Confidence 4555555553 33333 2345556666665 778888888888865321100 00000 0011233456666
Q ss_pred hhcCChHHHHHHHHhcccC----ChhH----HHHH-HHHHHHcCChhHHHHHHHHHHHcC---CCCchhHHHHHHHHH--
Q 035503 378 AKCERIDNAKQVFNSIILR----DVVL----WNTL-LAAYADLGRSGEASRLFYQMQLEG---ISPNIISWNSVILGF-- 443 (788)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~----~~~~----~~~l-~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~-- 443 (788)
.+.+... |...+++.... .... |..+ +..+...+++..|.+.++.+...- ..|-..++..++.+.
T Consensus 111 ~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~ 189 (608)
T PF10345_consen 111 FKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLH 189 (608)
T ss_pred HhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 6666655 77777665421 1112 2222 222223378999999998877542 234445555555554
Q ss_pred HhcCCHHHHHHHHHHhhhCC---------CCCChhhHHHHHHHH--HhCCCchHHHHHHHHH
Q 035503 444 LRNGQMNEAKDMFLQMQSLG---------VQPNLITWTTLISGL--TQNSCGNEAILFFQEM 494 (788)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~g---------~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m 494 (788)
.+.+..+++.+.++.+.... ..|....|..+++.+ ...|+++.+...++++
T Consensus 190 l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 190 LRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566677777777662211 134456666666544 4677776776665554
No 333
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.89 E-value=3.9 Score=39.56 Aligned_cols=57 Identities=18% Similarity=0.388 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPSK---ELPVYNAMISGYAMHGLAVEALALFKNLQ 596 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 596 (788)
++..++..+..+|+.+.+...++++... +...|..++.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4444555555555555555555444332 22344555555555555555555554443
No 334
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.86 E-value=1.8 Score=29.59 Aligned_cols=35 Identities=31% Similarity=0.248 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 035503 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 676 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
..+.-++.+.|+++.|....+.+++.+|++..+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34666788999999999999999999999755443
No 335
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.39 E-value=51 Score=36.39 Aligned_cols=145 Identities=10% Similarity=-0.066 Sum_probs=92.3
Q ss_pred hHHHHHHHHhcccC-ChhHHHHHHH----H-HHHcCChhHHHHHHHHHHH-------cCCCCchhHHHHHHHHHHhcC--
Q 035503 383 IDNAKQVFNSIILR-DVVLWNTLLA----A-YADLGRSGEASRLFYQMQL-------EGISPNIISWNSVILGFLRNG-- 447 (788)
Q Consensus 383 ~~~A~~~~~~~~~~-~~~~~~~l~~----~-~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~g-- 447 (788)
...|...++..... ++.....+.. + +....+.+.|+.+|+.+.. .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 56788888777543 4444333332 2 4456789999999999977 44 4446677888888754
Q ss_pred ---CHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhC---CCchHHHHHHHHHHhCCCCCCHHHHHHHHHHh--hccCch
Q 035503 448 ---QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN---SCGNEAILFFQEMLETGIKPSTTTITCALSAC--TDVASL 519 (788)
Q Consensus 448 ---~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~ 519 (788)
+.+.|..++....+.|.+ +. -..+...+... .+...|.++|...-+.|..+ ..-...++-.. ....+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCH
Confidence 567799999998887633 32 22333333322 45789999999999887432 22221111111 123467
Q ss_pred HHHHHHHHHHHHcCC
Q 035503 520 RNGRAIHGYLIRHDL 534 (788)
Q Consensus 520 ~~a~~~~~~~~~~~~ 534 (788)
+.|..++.++.+.+.
T Consensus 381 ~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHHHHHHHccC
Confidence 888888888888874
No 336
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.13 E-value=11 Score=35.52 Aligned_cols=176 Identities=13% Similarity=0.132 Sum_probs=95.1
Q ss_pred CHHHHHHHHhhCCC----CC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCC--CCHhHHHHHHHHhhccCcH
Q 035503 553 NIHQAKRVFDISPS----KE---LPVYNAMISGYAMHGLAVEALALFKNLQQK---GID--PDSITFTNILNACSHAGLV 620 (788)
Q Consensus 553 ~~~~A~~~~~~~~~----~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~--p~~~~~~~ll~~~~~~g~~ 620 (788)
+.++|+.-|+++.+ +. ..+...++..+.+.|++++-.+.|++|+.- .+. -...+.+++++-.+.+.+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555554432 11 123445677777777777777777776531 111 2334556666655555555
Q ss_pred HHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC--C-----CCCH-------HHHHHHHHHH
Q 035503 621 NEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP--C-----DPDA-------HIIGSLLSTC 682 (788)
Q Consensus 621 ~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-----~p~~-------~~~~~l~~~~ 682 (788)
+--.++|+..+....-.-+ ..+-..|+..|...|.+.+-.+++.++. + ..|. ..|-.-+..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 4444444433222111111 2333467788887777777777776651 1 1111 2333334556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC--CCchH----HHHHHHHHhCCCcHHHHHH
Q 035503 683 VKSNETELAEYISEHLLQLEPD--NPGNY----VALSNAYAASGRWNEVSQV 728 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~--~~~~~----~~l~~~~~~~g~~~~A~~~ 728 (788)
-.+++...-..+|++++....- +|.+. ..=+.++.+.|+|++|..-
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH
Confidence 6777777778888888775432 12222 2224457777888877643
No 337
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.76 E-value=4.2 Score=36.76 Aligned_cols=93 Identities=14% Similarity=0.058 Sum_probs=63.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCch----
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTMPC---DPD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEP--DNPGN---- 708 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~---- 708 (788)
...+..+++.|.+.|+.++|.+.+.++.. .+. ...+..+++.+...+|+........++...-. .+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 34566788888888888888888888732 122 34677788888888999888888888766422 22221
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 709 YVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 709 ~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
-..-|-.+...+++.+|.+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 222344566788888888887643
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.42 E-value=3.9 Score=37.12 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=50.7
Q ss_pred hHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhCCCcHHHH
Q 035503 656 LDEALRVILTMPCDP--DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD----NPGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 656 ~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 726 (788)
-++|.+.|-++...| +....-..+..|....|.++++.++.+++++.+. |+..+..|+.+|.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666663332 2233334444566688999999999999987543 5889999999999999998874
No 339
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.21 E-value=46 Score=34.68 Aligned_cols=107 Identities=12% Similarity=0.015 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC---C---------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHH-------cCCCC
Q 035503 542 TSLVDMYAKCGNIHQAKRVFDISPS---K---------ELPVYNAMISGYAMHGLAVEALALFKNLQQ-------KGIDP 602 (788)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~~~---~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~~~~p 602 (788)
..-.+.+.-.|++.+|.+++....- + .-..||.|.-.+.+.|.+.-+..+|.+..+ .|++|
T Consensus 244 ~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~ 323 (696)
T KOG2471|consen 244 LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKP 323 (696)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3345566677888888887753321 1 113467777777777877777777776653 35444
Q ss_pred CH-------hHHHH---HHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 603 DS-------ITFTN---ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 603 ~~-------~~~~~---ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
.. ..+.. ..-.|.+.|++-.|.+.|.+....+. .++..|..|+.++
T Consensus 324 ~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh--~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 324 AKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH--RNPRLWLRLAECC 379 (696)
T ss_pred CcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Confidence 21 11222 23357788888888888888876543 4556666666654
No 340
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.89 E-value=2.1 Score=33.39 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhCCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPD--NPGNYVALSNAYAASGR 721 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 721 (788)
.....+...+...|+++.|...+-.+++.+|+ +...-..+..++...|.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34444444444445555555544444444443 23344444444444444
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.80 E-value=50 Score=34.70 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=104.0
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 466 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
.|-...-+++..+..+-.+.-...+..+|+.- .-+...+..++.+|... ..++-..+|+++++..+ .+......|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 35566677788888888888888888888874 45667788888888777 56777888888888887 6666777777
Q ss_pred HHHHHcCCHHHHHHHHhhCCC-----C-Ch---hhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHhh
Q 035503 546 DMYAKCGNIHQAKRVFDISPS-----K-EL---PVYNAMISGYAMHGLAVEALALFKNLQQK-GIDPDSITFTNILNACS 615 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~~~-----~-~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~ 615 (788)
..|.+ ++.+.+...|.++.. + +. ..|..+...- -.+.+..+.+....... |..--.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 77776 777777777765432 1 11 2455554322 23455555555555443 22222344444445566
Q ss_pred ccCcHHHHHHHHHhcHh
Q 035503 616 HAGLVNEGLELFVGMFS 632 (788)
Q Consensus 616 ~~g~~~~A~~~~~~~~~ 632 (788)
...++++|++++..+++
T Consensus 217 ~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 217 ENENWTEAIRILKHILE 233 (711)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 77777777777776654
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.76 E-value=22 Score=30.57 Aligned_cols=52 Identities=15% Similarity=-0.035 Sum_probs=29.6
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC
Q 035503 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568 (788)
Q Consensus 516 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (788)
.++++.+..+++.+.-..| ....+-..-+..+...|+|++|+++|+.+.+..
T Consensus 23 ~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRP-NLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCC-CccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4455555555555555444 233333334555667777777777777776533
No 343
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.25 E-value=38 Score=32.93 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=44.1
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHH--HHHHH
Q 035503 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF--TNILN 612 (788)
Q Consensus 535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~ 612 (788)
.-++.....++..|.+.|++.+|...|-....++...+..++.... ..|.+.+...| ..++
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~----------------~~~~~~e~dlfi~RaVL- 149 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWS----------------TKGYPSEADLFIARAVL- 149 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHH----------------HHTSS--HHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHH----------------HhcCCcchhHHHHHHHH-
Confidence 3577889999999999999999998776543333222222222222 22222222222 2222
Q ss_pred HhhccCcHHHHHHHHHhcHhh
Q 035503 613 ACSHAGLVNEGLELFVGMFSD 633 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~ 633 (788)
-|...++...|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 255667788887777666543
No 344
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=85.03 E-value=43 Score=33.32 Aligned_cols=77 Identities=10% Similarity=-0.087 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC-------------
Q 035503 658 EALRVILTMPCDPDAHIIGSLLSTCV----KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG------------- 720 (788)
Q Consensus 658 ~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 720 (788)
.|...+.++...-+......++..|. ...|.++|...|+++-+... ......++ ++...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 56666666533334444445554442 23477888888888877666 55666666 666555
Q ss_pred --CcHHHHHHHHHHHHCCC
Q 035503 721 --RWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 721 --~~~~A~~~~~~~~~~~~ 737 (788)
+...|...++.....+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 66777777777766664
No 345
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.85 E-value=34 Score=34.00 Aligned_cols=133 Identities=10% Similarity=0.130 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cC----CHHHHHHHHHHhhhCCC---CCChhhHHHHHHHHHhCCCc
Q 035503 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLR--NG----QMNEAKDMFLQMQSLGV---QPNLITWTTLISGLTQNSCG 484 (788)
Q Consensus 414 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~g----~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~ 484 (788)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....|..+|+.|.+... .++-..+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788889999988888777653333332 22 34568889999965422 2233444444332 33333
Q ss_pred ----hHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhccCc--hHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 035503 485 ----NEAILFFQEMLETGIKPSTT--TITCALSACTDVAS--LRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548 (788)
Q Consensus 485 ----~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (788)
+.+..+|+.+.+.|+..+.. .+..++..+..... ...+..+++.+.+.+.......|..++-.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 45667788888877766543 34444443333222 457788888888888876666666555443
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.79 E-value=1.7 Score=28.31 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..|+.+|.+.|+.+.|..+++.+...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 568899999999999999999988654
No 347
>PRK12798 chemotaxis protein; Reviewed
Probab=84.74 E-value=51 Score=33.90 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=102.1
Q ss_pred HcCCHHHHHHHHhhCCCC----ChhhHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCCCCHh----HHHHHHHHhhccCcH
Q 035503 550 KCGNIHQAKRVFDISPSK----ELPVYNAMISG-YAMHGLAVEALALFKNLQQKGIDPDSI----TFTNILNACSHAGLV 620 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~ 620 (788)
-.|+-++|.+.+..+... ....+-.|+.+ .....+..+|+++|++..-. .|-.. ...--+....+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 368888888888776542 23345555554 44567888999999987653 45332 233333356788999
Q ss_pred HHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 035503 621 NEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCG---NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696 (788)
Q Consensus 621 ~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 696 (788)
+++..+-....+.+...|-...|. .++..+.+.+ +.+.-..++..|...-....|..+.+.-...|+.+.|....+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 998888777777777777665554 3444444333 334444555555433335688888888899999999999999
Q ss_pred HHHhcCCC
Q 035503 697 HLLQLEPD 704 (788)
Q Consensus 697 ~~~~~~p~ 704 (788)
+++.+...
T Consensus 282 ~A~~L~~~ 289 (421)
T PRK12798 282 RALKLADP 289 (421)
T ss_pred HHHHhccC
Confidence 99988643
No 348
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.62 E-value=3.9 Score=39.83 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=72.6
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC----CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTMP----CDPD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
.+|..=++-|.+..++..|...|.+-- ..|| ...|.+-..+-.-.|++..|+.-..++++.+|.+..+|+.=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 344445677889999999999997761 2344 3456666666677899999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHH
Q 035503 715 AYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 715 ~~~~~g~~~~A~~~~~~~ 732 (788)
++....+.++|....+..
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999977777665544
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.46 E-value=15 Score=37.70 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=57.0
Q ss_pred hCCCHHHHH-HHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 035503 581 MHGLAVEAL-ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 581 ~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 659 (788)
..|+...|- +++.-+....-.|+.......| ..+.|+++.+...+..... -+.....+..+++..+.+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 445555443 3333333333334444333332 4566666666666555432 2223344555556666666666666
Q ss_pred HHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 660 LRVILTMP-CD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 660 ~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
......+- .+ .+..............|-++++.-.+++.+.++|.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 66555541 11 12222222223334445556666666666665554
No 350
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.80 E-value=20 Score=38.29 Aligned_cols=149 Identities=18% Similarity=0.141 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHh
Q 035503 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 629 (788)
-.|+++.|..++..++++ .-+.+++.+.++|-.++|+++ .+|...-. ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHh
Confidence 345566666555555432 234445555556665555443 22222211 112356777776665543
Q ss_pred cHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 630 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
. .+..-|..|+++....|++..|.+.|.... -|..|+-.+...|+.+.-..+...+.+....
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~----- 724 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN----- 724 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhccc-----
Confidence 3 234456677777777777777777776552 2444555555556655444444444333222
Q ss_pred HHHHHHHHhCCCcHHHHHHHHH
Q 035503 710 VALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
+....+|...|++++..+++-.
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHh
Confidence 2334456667777777666543
No 351
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.76 E-value=3.9 Score=42.95 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=70.5
Q ss_pred ccCcHHHHHHHHHhcHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHH
Q 035503 616 HAGLVNEGLELFVGMFSDHQVKPS--MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELA 691 (788)
Q Consensus 616 ~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A 691 (788)
..|+...|...+..+. ...|. ......|+..+.+.|...+|-.++.+. . ....+.++..+++++....+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 4677777877777665 33443 223346777777788888888777665 1 233445777888888888899999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 692 EYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 692 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
++.++.+++++|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999998888777766544
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.34 E-value=46 Score=32.24 Aligned_cols=58 Identities=10% Similarity=0.240 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKEL---PVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
+.+.....|..+|.+.+|.++.++...-|+ ..|-.|+..+...|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344456677778888888888777665333 4677788888888887777777776643
No 353
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=83.21 E-value=2.1 Score=39.21 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCcc
Q 035503 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 739 (788)
..+.+|.+.|-++|.+++++-|+....|..++....+.|+.+.|.+.+++.++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4567888889999999999999999999999999999999999999999888876543
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.95 E-value=84 Score=35.03 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh
Q 035503 438 SVILGFLRNGQMNEAKDMFLQMQS 461 (788)
Q Consensus 438 ~ll~~~~~~g~~~~A~~~~~~~~~ 461 (788)
.|+..|...++++.|..++-.+.+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccC
Confidence 377777888888888877766653
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.57 E-value=5.1 Score=38.29 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
.++.....|...|.+.+|..+-+++++++|-+...+..|..+|...|+--.|.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445566788999999999999999999999999999999999999999999988888754
No 356
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.85 E-value=17 Score=37.66 Aligned_cols=107 Identities=12% Similarity=0.039 Sum_probs=68.4
Q ss_pred hhccCcHHHHHHHHHhcHh--hcCC--CCC--c-chHHHHHHHHhhcCChHHHHHHHHhC----------CCCCC-----
Q 035503 614 CSHAGLVNEGLELFVGMFS--DHQV--KPS--M-EHFGCVVNLLSRCGNLDEALRVILTM----------PCDPD----- 671 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~--~~~~--~p~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~----- 671 (788)
+.-.|++..|.+++...-. ..|. .|. . ..++.|+....+.|.+.-+..+|.++ ..+|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4456888888887764411 1111 111 1 12246666667777777766666554 11221
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 672 -----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 672 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
.....+.+-.|...|+.-.|.++|.++.+....+|..|..|+.++....
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 1233345556778899999999999999998888999999999886644
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.83 E-value=5.3 Score=36.44 Aligned_cols=63 Identities=16% Similarity=0.033 Sum_probs=48.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 644 GCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
...+..+.+.+.+.+|+...+.- . .+.|...-..++..++..|++++|..-++-+-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456778888999998887655 3 334556777888888999999999999998888888853
No 358
>PRK09687 putative lyase; Provisional
Probab=81.71 E-value=57 Score=32.20 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=25.7
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcH
Q 035503 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631 (788)
Q Consensus 567 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 631 (788)
++...-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|+..+..+.
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 444444444455555554 23444444433321 1 122344455555553 4555555554
No 359
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.26 E-value=77 Score=33.42 Aligned_cols=175 Identities=10% Similarity=0.097 Sum_probs=119.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHH
Q 035503 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509 (788)
Q Consensus 430 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (788)
..|.....+++..+...-...-.+.+..+|...|- +...|..++.+|... ..++-..+++++.+. .-+......-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHH
Confidence 45777788889999988888888999999977753 778899999999998 678888999998884 3455555555
Q ss_pred HHHhhccCchHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHhhCCCC-----ChhhHHHHHHHH
Q 035503 510 LSACTDVASLRNGRAIHGYLIRHDLCLP-----TPIVTSLVDMYAKCGNIHQAKRVFDISPSK-----ELPVYNAMISGY 579 (788)
Q Consensus 510 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~ 579 (788)
+..+...++.+++..+|..++..-++.. ..+|..+...- ..+.+.-+.+...+... ..+.+..+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 5555555888999999988877554211 11333333211 23455555555544432 223455566678
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 612 (788)
....++++|++++....+.. .-|...-..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 88899999999999888764 334444444443
No 360
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=81.06 E-value=62 Score=32.20 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccCc--HHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 586 VEALALFKNLQQKGIDPDS--ITFTNILNACSHAGL--VNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 586 ~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
+.++.+|+.+...|+..+. .....++..+..... ...+.++++.+.+. ++++...+|..++-+-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 3456667777776665532 222233322222211 33566777777443 7777777776555443
No 361
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.91 E-value=2.6 Score=24.39 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..+..++.+|...|++++|...++..++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 468899999999999999999999887643
No 362
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=80.85 E-value=1.6 Score=44.74 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=71.4
Q ss_pred HHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCC
Q 035503 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNE 687 (788)
Q Consensus 611 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~ 687 (788)
+......+.++.|+.+|.+++ .+.|+..+|. .-..++.+.+++..|+.=+.++ ...|.. ..|..-+.+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 445667788999999998887 6678755544 4457788888888887665555 445543 345555667778888
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 688 TELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 688 ~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
+.+|...+++...+.|+++.+...+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 8999999999999999976655443
No 363
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.83 E-value=14 Score=28.91 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEEcCCCCCCChHHHHHH
Q 035503 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771 (788)
Q Consensus 692 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (788)
+..+++.++.+|+|....+.++..+...|++++|.+.+-.+++.......+.... .-+..|..-...||-+....++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~---~ll~~f~~lg~~~plv~~~RRk 84 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARK---RLLDIFELLGPGDPLVSEYRRK 84 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHH---HHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHH---HHHHHHHHcCCCChHHHHHHHH
Confidence 4456777788888888888888888888888888888877776643322221100 0011133334446666666665
Q ss_pred HHH
Q 035503 772 LAL 774 (788)
Q Consensus 772 l~~ 774 (788)
|-.
T Consensus 85 L~~ 87 (90)
T PF14561_consen 85 LAS 87 (90)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 364
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.82 E-value=3.6 Score=24.28 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 035503 686 NETELAEYISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 686 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888888877654
No 365
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.78 E-value=27 Score=27.53 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 035503 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598 (788)
Q Consensus 519 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 598 (788)
.++|..+-+.+...+- ....+-..-+..+...|++++|..+.+....||...|-+|.. .+.|..+++...+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3445444444444332 122222222345567788888888888887788877776643 4567777777777777666
Q ss_pred CCCCCHhHH
Q 035503 599 GIDPDSITF 607 (788)
Q Consensus 599 ~~~p~~~~~ 607 (788)
| .|....|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 5 4544444
No 366
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.72 E-value=90 Score=34.54 Aligned_cols=205 Identities=18% Similarity=0.193 Sum_probs=107.4
Q ss_pred HHHHHHHHhhhCCCCCCh---hhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHH----------HHHHHHHhhccC
Q 035503 451 EAKDMFLQMQSLGVQPNL---ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTT----------ITCALSACTDVA 517 (788)
Q Consensus 451 ~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----------~~~ll~~~~~~~ 517 (788)
+--..+++|..+--.|++ .+-..++-.|....+++..+++.+.+.. -||..- |...+.---+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCc
Confidence 334556666544333333 3444555566666777777777777765 343211 111122222345
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 518 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
+-++|....-.+++..-...+. +||-+|++-+-. -+-+.|-..+..+.|+++|++.-+
T Consensus 258 DRakAL~~~l~lve~eg~vapD-------m~Cl~GRIYKDm---------------F~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPD-------MYCLCGRIYKDM---------------FIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCc-------eeeeechhhhhh---------------hhccCCcchhhHHHHHHHHHHHhc
Confidence 6666666655555533222222 233344322111 011234455667788899988655
Q ss_pred cCCCCCHhHHHHHHHHhhccCc-HHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHH
Q 035503 598 KGIDPDSITFTNILNACSHAGL-VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676 (788)
Q Consensus 598 ~~~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 676 (788)
+.|+...=..+...+...|. ++...++ +. +-..|..++++.|.++.-.++++-.
T Consensus 316 --veP~~~sGIN~atLL~aaG~~Fens~El-q~------------IgmkLn~LlgrKG~leklq~YWdV~---------- 370 (1226)
T KOG4279|consen 316 --VEPLEYSGINLATLLRAAGEHFENSLEL-QQ------------IGMKLNSLLGRKGALEKLQEYWDVA---------- 370 (1226)
T ss_pred --cCchhhccccHHHHHHHhhhhccchHHH-HH------------HHHHHHHHhhccchHHHHHHHHhHH----------
Confidence 56765432222222223332 2111111 10 1124567788889888887777432
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
..+.+-.-.+|+.+|+.+.+++.++.|..
T Consensus 371 ~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 371 TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 23444556788999999999999988773
No 367
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=79.40 E-value=1.5 Score=36.18 Aligned_cols=25 Identities=60% Similarity=1.185 Sum_probs=20.1
Q ss_pred ceeEEEECCeEEEEEcCCCCCCChHHHHH
Q 035503 742 GCSWIQIGEELHVFVACDRSHPKTEEIYA 770 (788)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (788)
|++|+++ |.|++||.+||+...++.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~ 26 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINK 26 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHH
Confidence 6789866 999999999999844443
No 368
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=79.19 E-value=8.4 Score=37.05 Aligned_cols=78 Identities=23% Similarity=0.207 Sum_probs=56.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEEcCCCC
Q 035503 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRS 761 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (788)
..+.|+.++|..+++.++.+.|+++.++..++......++.-+|-++|-+.+... |+.+-.++ ..++-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis----P~nseALv--------nR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTIS----PGNSEALV--------NRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC----CCchHHHh--------hhhcc
Confidence 3577899999999999999999999999999988888888888888887654433 44333322 23344
Q ss_pred CCChHHHHHH
Q 035503 762 HPKTEEIYAT 771 (788)
Q Consensus 762 ~~~~~~~~~~ 771 (788)
-|-...|.++
T Consensus 194 ~plV~~iD~r 203 (472)
T KOG3824|consen 194 TPLVSAIDRR 203 (472)
T ss_pred chHHHHHHHH
Confidence 5666666553
No 369
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.95 E-value=54 Score=30.31 Aligned_cols=124 Identities=14% Similarity=0.065 Sum_probs=75.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVV 647 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~ 647 (788)
.+.-++.+.+.+...+|+...++-++.+ +.|..+-..++..++-.|++++|..-++-+. .+.|+ ...|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 4455667788888999998888766653 3355666677778899999999988777663 34454 34444444
Q ss_pred HHHhhcCChHHHH-HHHHhC--CC--CCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 648 NLLSRCGNLDEAL-RVILTM--PC--DPDAHIIGSLLST---CVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 648 ~~~~~~g~~~~A~-~~~~~~--~~--~p~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
. .+.+. ++|..- +. -.+...|...+.+ |...|.-+....+-+.+++..|...
T Consensus 80 r-------~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 80 R-------CEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred H-------HHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 3 23333 233222 11 1123345444333 3334566767788888888877743
No 370
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.87 E-value=27 Score=27.52 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=57.6
Q ss_pred CchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHH
Q 035503 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276 (788)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 276 (788)
..++|..|-+.+...+- ....+--.-+..+...|++++|..+.+....||...|-+|-. -+.|..+.+..-+..|..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 44566666666554431 123333334456788999999999999998899998877754 467777777777777777
Q ss_pred cCCCCCHHHH
Q 035503 277 EGVEPTRVSV 286 (788)
Q Consensus 277 ~g~~p~~~t~ 286 (788)
+| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 76 4544444
No 371
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.60 E-value=3.8 Score=23.03 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=9.7
Q ss_pred HHHHHHhhcCChHHHHHHH
Q 035503 645 CVVNLLSRCGNLDEALRVI 663 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~ 663 (788)
.++..+...|++++|...+
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555544
No 372
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.98 E-value=20 Score=34.92 Aligned_cols=101 Identities=10% Similarity=0.150 Sum_probs=61.0
Q ss_pred cCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCC-Cc-----chHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHH
Q 035503 212 GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NV-----VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285 (788)
Q Consensus 212 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 285 (788)
|.+....+...++..-....+++.++..+=.+.+. +. .+-...++ .+-.-++++++.++..=+.-|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchhh
Confidence 33333444444444444456666776666555331 11 01111222 2234467788888877777888888888
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHHHhC
Q 035503 286 VTSILSASANLDALDEGKQAHAVAVING 313 (788)
Q Consensus 286 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 313 (788)
++.+++.+.+.+++..|.++.-.++...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888777776666554
No 373
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.66 E-value=17 Score=28.39 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 035503 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530 (788)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 530 (788)
++.+-++.+....+.|++......+.+|.+.+++..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555666777777777777777777776666666555
No 374
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.27 E-value=18 Score=28.29 Aligned_cols=50 Identities=10% Similarity=-0.021 Sum_probs=40.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHh
Q 035503 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVIN 312 (788)
Q Consensus 263 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 312 (788)
+.-++.+-++.+....+.|++....+.+++|.+.+|+..|..+++.++..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34456666777777788999999999999999999999999999977743
No 375
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.21 E-value=10 Score=36.73 Aligned_cols=99 Identities=18% Similarity=0.138 Sum_probs=66.0
Q ss_pred CCchhHhhHHHHHHhccCChHHHHHHhccCCC-CCc-----ccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHH
Q 035503 113 ARNEYVETKLVVFYAKCDALDVASRLFCRLRV-KNV-----FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186 (788)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 186 (788)
+........++..-.....++++...+-.+.. ++. .+-...++.+. .-++++++.++..=++.|+.||.++++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 33444444444444445666666666544432 211 11122333333 346779999999889999999999999
Q ss_pred HHHHHhcccCCchHHHHHHHHHHHHc
Q 035503 187 NVLKACGALGWVGFGRAVHGYVLKVG 212 (788)
Q Consensus 187 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 212 (788)
.+|+.+.+.+++.+|.++...|+...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999888887765
No 376
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.34 E-value=21 Score=32.59 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHHcCCHHHHH
Q 035503 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH---DLCLPTPIVTSLVDMYAKCGNIHQAK 558 (788)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (788)
+.|...|-++...+.--+ ..+...+..|....+.+++..++-.+++. +..+++.++.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666665543322 33333333444455666666666665552 22356777777777777777777664
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.27 E-value=5.6 Score=29.65 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=35.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHH---HHHHHHHhCCCcHHHHHH
Q 035503 683 VKSNETELAEYISEHLLQLEPDNPGNYV---ALSNAYAASGRWNEVSQV 728 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~ 728 (788)
...++.++|+..++++++..++.+.-+. .|+.+|...|++.++++.
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777889999999999998887665544 455668888888888775
No 378
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.00 E-value=1.5e+02 Score=33.40 Aligned_cols=76 Identities=11% Similarity=-0.007 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhc---CCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhc
Q 035503 318 NVLGSSIINFYSKVGLLEDAEVVFSRM---VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI 393 (788)
Q Consensus 318 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (788)
.........+....|+.++|......+ ....+...+.++..+.+.|..+....-.=++.....|+...|..+...+
T Consensus 129 ~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l 207 (644)
T PRK11619 129 VEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL 207 (644)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc
Confidence 333344455555555554444433333 1123444555555555555555444444445555555555555555444
No 379
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.29 E-value=97 Score=33.46 Aligned_cols=131 Identities=16% Similarity=0.123 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (788)
.+.++..+-++|-.++|+++ .+|+..- .....+.|+++.|.++..+. .+..-|..|+++..+
T Consensus 617 rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhh
Confidence 34445555555655555542 3332211 12233456666665554433 445566777777777
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 551 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
.|++..|.+.|..... |..|+-.+...|+.+.-..+-....+.|. .| ..| .+|...|++++..+++.+-
T Consensus 679 ~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N-~AF----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 679 AGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NN-LAF----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred cccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cc-hHH----HHHHHcCCHHHHHHHHHhc
Confidence 7777777777765443 55666666666666555555444444442 12 222 2345567777776666533
No 380
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.23 E-value=42 Score=26.67 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHc
Q 035503 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532 (788)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 532 (788)
+...-++.+....+.|++..+...+.+|.+.+++..|.++++-+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555566666667777777777777777777777777777766554
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.73 E-value=15 Score=38.88 Aligned_cols=132 Identities=17% Similarity=0.105 Sum_probs=91.8
Q ss_pred CCCHhHHHHHHHHhhcc--CcHHHHHHHHHhcHhhcCCCCCcchHH--HHHHHHhh-cCChHHHHHHHHhC-CCCCCH--
Q 035503 601 DPDSITFTNILNACSHA--GLVNEGLELFVGMFSDHQVKPSMEHFG--CVVNLLSR-CGNLDEALRVILTM-PCDPDA-- 672 (788)
Q Consensus 601 ~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~-~g~~~~A~~~~~~~-~~~p~~-- 672 (788)
.|+..+...++.-...- ...+-|-.++-.|. .|....|. .++..|.| .|+...|.+.+..+ ...|..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-----~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~ 642 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-----KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD 642 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-----CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc
Confidence 46666666555433222 12233444444442 24433333 44555654 79999999988776 333332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+....|+....+.|-.-.|-.++.+++.+.-..|-+++.++++|....+.+.|++.|+...++..
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 34566777788888888999999999999988899999999999999999999999999887654
No 382
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.18 E-value=31 Score=32.29 Aligned_cols=81 Identities=7% Similarity=-0.050 Sum_probs=41.7
Q ss_pred HHHcCCHHHHHHHHhhCC--CCChhh-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHH-HHHHHhhccCcHHHH
Q 035503 548 YAKCGNIHQAKRVFDISP--SKELPV-YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT-NILNACSHAGLVNEG 623 (788)
Q Consensus 548 ~~~~g~~~~A~~~~~~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~A 623 (788)
|....+++.|+..|.+.. .|.+.+ |..-+.++.+..+++.+..--.+.++ +.||.+--. .+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 334445566666554433 244433 34455566666666666555555444 345543322 233345555666666
Q ss_pred HHHHHhc
Q 035503 624 LELFVGM 630 (788)
Q Consensus 624 ~~~~~~~ 630 (788)
+..+.++
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6666655
No 383
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.96 E-value=24 Score=27.05 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHH
Q 035503 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589 (788)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 589 (788)
.++++...+.|+ .+......+-.+-...|+.+.|.++++.++ ..+..+..++.++...|..+-|.
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 344555555554 333333333333335577777777777777 66667777777777777655553
No 384
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=71.79 E-value=27 Score=27.72 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 667 PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 667 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
..-|++.+..+.+.+|++.+|+..|+++++-+.....+....|..+
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 4568899999999999999999999999998887766655455544
No 385
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=71.46 E-value=7 Score=35.99 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=41.5
Q ss_pred HHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 649 LLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 649 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
+..+.|+.+.|.+++.++ .. +.+...|..++....+.|+++.|.+.|++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345567777777777776 22 3345677777777788888888888888888888875
No 386
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.85 E-value=34 Score=28.83 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=46.1
Q ss_pred CCCcchHHHHHHHHhhcCChH---HHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 637 KPSMEHFGCVVNLLSRCGNLD---EALRVILTMP--CDPD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 637 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.++..+-..+++++.+..+.+ +-+.+++++- ..|+ -....-|.-++.+.|+++.+++..+..++.+|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 345555556677776655443 3444555542 2222 234455666788999999999999999999999643
No 387
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.80 E-value=13 Score=29.28 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=37.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC---------CchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 683 VKSNETELAEYISEHLLQLEPDN---------PGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.+.||+..|.+.+.+.+...... ..+...++.++...|++++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46677777777777776543321 234566788888999999999998887654
No 388
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.78 E-value=1.1e+02 Score=29.57 Aligned_cols=179 Identities=10% Similarity=0.008 Sum_probs=89.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCC----C----CChhhHHHH-HHHHHhCCCHHHHHHHHHHHHH---c-CCCCCHhHH
Q 035503 541 VTSLVDMYAKCGNIHQAKRVFDISP----S----KELPVYNAM-ISGYAMHGLAVEALALFKNLQQ---K-GIDPDSITF 607 (788)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~----~----~~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~---~-~~~p~~~~~ 607 (788)
-..++.++.+.|++.+|+...+.+. + ++..+...+ -.+|....+..++..-+...+. . =.+|....-
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~ 207 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQ 207 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHH
Confidence 3457788889999999988775332 1 222211111 1233333333333333322221 1 123433443
Q ss_pred HHHHHH--hhccCcHHHHHHHHHhcHhhcC-CCCCcchHHHHHHHHh---hcCChHHHHHHHHhCC-----CCCCHHHHH
Q 035503 608 TNILNA--CSHAGLVNEGLELFVGMFSDHQ-VKPSMEHFGCVVNLLS---RCGNLDEALRVILTMP-----CDPDAHIIG 676 (788)
Q Consensus 608 ~~ll~~--~~~~g~~~~A~~~~~~~~~~~~-~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~-----~~p~~~~~~ 676 (788)
.-|+++ .|...++.-|..+|-+..+.+. ...+......|--++. -.++.++...+++.-. ...+.....
T Consensus 208 lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~ 287 (421)
T COG5159 208 LDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAML 287 (421)
T ss_pred HHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHH
Confidence 444554 3556677888888877766332 2233333333332222 2445555555553321 112334455
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 677 SLLSTCVK--SNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 677 ~l~~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
....++.. ..++..|..-|+.-+..+|--...+..|-+.+...
T Consensus 288 avaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LYD~LLe~ 332 (421)
T COG5159 288 AVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDVLLEK 332 (421)
T ss_pred HHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHHHHHHHh
Confidence 55555533 35777888877777666665444455555554444
No 389
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=69.75 E-value=16 Score=22.64 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHhcCCC
Q 035503 675 IGSLLSTCVKSNETELAEYI--SEHLLQLEPD 704 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~--~~~~~~~~p~ 704 (788)
|..++..+..+|++++|+.+ +.-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44555556666666666666 3355555544
No 390
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.73 E-value=9.6 Score=28.47 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=24.7
Q ss_pred ccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHH
Q 035503 616 HAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRV 662 (788)
Q Consensus 616 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 662 (788)
+..+.++|+..|+.+++...-.|+ ..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666544322222 23334555666666666665554
No 391
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=68.07 E-value=2.6e+02 Score=33.26 Aligned_cols=93 Identities=9% Similarity=-0.063 Sum_probs=43.6
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 638 PSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 638 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
++...-...+.++.+.|..+.+...+..+..+++..+-...+.++...+. +++...+..+++ +|+ ..+-...+.++.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-D~~-~~VR~~A~~aL~ 863 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-DPH-LDVRKAAVLALT 863 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-CCC-HHHHHHHHHHHh
Confidence 44444455566666666554443333333334454444455555555543 334444444442 332 444444455554
Q ss_pred hCCCcHHHHHHHHHHH
Q 035503 718 ASGRWNEVSQVRDIMK 733 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~ 733 (788)
+.+.-.++...+..++
T Consensus 864 ~~~~~~~a~~~L~~al 879 (897)
T PRK13800 864 RWPGDPAARDALTTAL 879 (897)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 4422334555554443
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.01 E-value=68 Score=33.34 Aligned_cols=50 Identities=10% Similarity=0.079 Sum_probs=23.8
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHh--HHHHHHHHhh--ccCcHHHHHHHHHhcH
Q 035503 581 MHGLAVEALALFKNLQQKGIDPDSI--TFTNILNACS--HAGLVNEGLELFVGMF 631 (788)
Q Consensus 581 ~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~g~~~~A~~~~~~~~ 631 (788)
..+++..|.++++++... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 455666666666665554 333332 2233333322 3445555655555543
No 393
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=67.75 E-value=1.2e+02 Score=29.09 Aligned_cols=163 Identities=12% Similarity=0.041 Sum_probs=87.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc-cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh
Q 035503 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH-AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652 (788)
Q Consensus 574 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 652 (788)
.++....+.|++++....++++...+...+..--+.|..+|-. .|....+++.+..+.....-..+ .....++.-|.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 4566777888888888888888887666666555555555532 34555566666655433222212 222233333322
Q ss_pred ------cCChHHHHHHHHhCC----CCCCHHHHHH--HHHHHH---h--cC-----CHHHHHHHHHHHHh-----cCCCC
Q 035503 653 ------CGNLDEALRVILTMP----CDPDAHIIGS--LLSTCV---K--SN-----ETELAEYISEHLLQ-----LEPDN 705 (788)
Q Consensus 653 ------~g~~~~A~~~~~~~~----~~p~~~~~~~--l~~~~~---~--~g-----~~~~A~~~~~~~~~-----~~p~~ 705 (788)
..-..+.+.+++..- ..+...++.. .+..|+ . .| -.+.|...|+++++ +.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 122455666666641 1222222222 222221 1 11 23678888888775 46666
Q ss_pred CchHHHH----HHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 706 PGNYVAL----SNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 706 ~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
|.-+... ...|.-.|+.++|.++-+...+...
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 6543322 2345669999999999888876654
No 394
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.70 E-value=1.3e+02 Score=29.49 Aligned_cols=58 Identities=16% Similarity=0.254 Sum_probs=34.8
Q ss_pred CCchhhhhHHHHHhHhcCChHHHHHHHhcCC-----CCCcchHHHHHHHHHHCCChhHHHHHH
Q 035503 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMI-----ARNVVAWNSMIVGYVQNGLNEEAIRVF 271 (788)
Q Consensus 214 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~ 271 (788)
.++..+...++..+++.+++..-.++.+... ..|...|..+|......|+..-...+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 4445555566666666666666666665542 236667777777777777765444433
No 395
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=67.54 E-value=69 Score=26.36 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchH----HHHHHHHHhCCCcHHHHHHHHHH
Q 035503 677 SLLSTCVKSNETELAEYISEHLL-------QLEPDNPGNY----VALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
.|..++...|++++++...++++ ++..+....| ++-+.++...|+.++|.+.|++.
T Consensus 60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34444444455544444444443 2334433333 34566788889999998888764
No 396
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=67.29 E-value=2.1e+02 Score=31.91 Aligned_cols=184 Identities=15% Similarity=0.113 Sum_probs=100.3
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC-CChhh-H---HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccC
Q 035503 544 LVDMYAKCGNIHQAKRVFDISPS-KELPV-Y---NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618 (788)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 618 (788)
++-++..-|+.++|..+.+++.. .|+.. | -++..+|+-.|+.....+++.-.+.. +..|..-+..+.-++.-..
T Consensus 507 vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 507 VGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 34455566777788888887765 34432 2 24566788888877666666654442 2334444443333566667
Q ss_pred cHHHHHHHHHhcHhhcCCCCCcchHH--HHHHHHhhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHH
Q 035503 619 LVNEGLELFVGMFSDHQVKPSMEHFG--CVVNLLSRCGNLDEALRVILTMPCDPDAHII-GSLLSTCVKSNETELAEYIS 695 (788)
Q Consensus 619 ~~~~A~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~ 695 (788)
+++....+..-+.+. ..|-++--. .|+-+|.-.| ..+|+.+++.+..+|...+. .+++ ..|.-+.
T Consensus 586 dp~~~~s~V~lLses--~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~D~~~fVRQgAlI---------a~amIm~ 653 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES--YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTSDPVDFVRQGALI---------ALAMIMI 653 (929)
T ss_pred ChhhchHHHHHHhhh--cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhcChHHHHHHHHHH---------HHHHHHH
Confidence 888777777766553 345444333 3444444444 57889999888655443221 1222 1122222
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCc
Q 035503 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPG 742 (788)
Q Consensus 696 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 742 (788)
++--+..|+-......+..+- ..+.++...=|..++.+|+-.-.|
T Consensus 654 Q~t~~~~pkv~~frk~l~kvI--~dKhEd~~aK~GAilAqGildaGG 698 (929)
T KOG2062|consen 654 QQTEQLCPKVNGFRKQLEKVI--NDKHEDGMAKFGAILAQGILDAGG 698 (929)
T ss_pred hcccccCchHHHHHHHHHHHh--hhhhhHHHHHHHHHHHhhhhhcCC
Confidence 222234444322222222221 345677777788888888755444
No 397
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.15 E-value=1.3e+02 Score=29.22 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=21.6
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCH-------HHHHHHHHHhhccCchHH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPST-------TTITCALSACTDVASLRN 521 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~ 521 (788)
.+.+++++|...+.+++..|+..+. .+...+...|...|+...
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 4445555555555555555544443 234444455555554443
No 398
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=66.10 E-value=47 Score=32.00 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..++-.++...++++.|....++.+.++|+++.-...-|.+|.+.|-..-|...++...+.-
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 34455668899999999999999999999999999999999999999999999998866543
No 399
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.00 E-value=1.2e+02 Score=28.79 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=40.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
.+.++..++...|++-++++...++ ...| +...+..-+.+....=+.++|..-+.++++++|.-..+
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 3444555666667777776666655 2223 33344444445555557788888888888888874433
No 400
>PRK10941 hypothetical protein; Provisional
Probab=64.91 E-value=44 Score=32.59 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=45.1
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 645 CVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
.+-.+|.+.++++.|+.+.+.+ ...|+ +.-+..-+-.|.+.|.+..|..-++..++..|+++.+-
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4556667777777777777776 33333 34566667777788888888888888888888866553
No 401
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.83 E-value=3e+02 Score=32.77 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=90.6
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHH-HHHHHHHHHHcCCCCCHhHHHHHHHHh
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE-ALALFKNLQQKGIDPDSITFTNILNAC 614 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~ 614 (788)
++..+-...+.++.+.+..+. +...+..++...-...+.++...+..+. +...+.++.. .+|...-...+.++
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aL 799 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAAL 799 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 455555555666665554332 2334445666555666666666655432 3445555443 45666666677777
Q ss_pred hccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 035503 615 SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 615 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
...|..+.+...+..++.+ ++...-...+.++.+.+. +++...+..+-.+|+..+-...+.++...+....+...
T Consensus 800 g~~g~~~~~~~~l~~aL~d----~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~ 874 (897)
T PRK13800 800 AELGCPPDDVAAATAALRA----SAWQVRQGAARALAGAAA-DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDA 874 (897)
T ss_pred HhcCCcchhHHHHHHHhcC----CChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHH
Confidence 7777665554444444432 454455566777777765 45666666665667777777777777665444567777
Q ss_pred HHHHHh
Q 035503 695 SEHLLQ 700 (788)
Q Consensus 695 ~~~~~~ 700 (788)
+.++++
T Consensus 875 L~~al~ 880 (897)
T PRK13800 875 LTTALT 880 (897)
T ss_pred HHHHHh
Confidence 777766
No 402
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.78 E-value=66 Score=31.04 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=47.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHh--
Q 035503 576 ISGYAMHGLAVEALALFKNLQQK--GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS-- 651 (788)
Q Consensus 576 ~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~-- 651 (788)
|.+++..+++.+++.+.-+--+. .++|.. ...-|-.|++.+.+..+.+.-...+...+ .-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 45666666666665544332221 133333 22333347777777777666665554321 222334666555553
Q ss_pred ---hcCChHHHHHHHHhC
Q 035503 652 ---RCGNLDEALRVILTM 666 (788)
Q Consensus 652 ---~~g~~~~A~~~~~~~ 666 (788)
=.|.++||++++...
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 468888888887443
No 403
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.61 E-value=73 Score=25.62 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=51.8
Q ss_pred cCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHH
Q 035503 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274 (788)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 274 (788)
....++|..+.+.+...+ .....+.-..+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+..+
T Consensus 19 ~HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 345667777777776665 2333444444566788999999966666667788888876643 5788888888888877
Q ss_pred HHcC
Q 035503 275 TLEG 278 (788)
Q Consensus 275 ~~~g 278 (788)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 7665
No 404
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.94 E-value=2e+02 Score=30.37 Aligned_cols=161 Identities=13% Similarity=0.083 Sum_probs=103.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCH-------hHHHHHHHH-hhccCcHHHHHHHHHhcHhhcCCCCCcchH-
Q 035503 574 AMISGYAMHGLAVEALALFKNLQQKG-IDPDS-------ITFTNILNA-CSHAGLVNEGLELFVGMFSDHQVKPSMEHF- 643 (788)
Q Consensus 574 ~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-------~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~- 643 (788)
.++.+-.-.|++.+|++-...|.+-- -.|.. .....++.. |...|.++.|...|..+.+.. -.-|...+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~ 406 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFC 406 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 34445556899999998888887631 12331 122334443 456789999999998876542 12333333
Q ss_pred -HHHHHHHhhcCChHHHHHHHHhCCCC-CCH---H-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCc
Q 035503 644 -GCVVNLLSRCGNLDEALRVILTMPCD-PDA---H-----IIGSLLSTCVKSNETELAEYISEHLLQLEPD------NPG 707 (788)
Q Consensus 644 -~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~---~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~ 707 (788)
..++..|.+.|+-+.-.++++.+... ..+ . .+...+--....|++.+|...+.+.+++.-- ..-
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 27788899999988888888887422 111 1 1111112235789999999999999887511 233
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.+..|+.+....|+..++....+-..+.
T Consensus 487 ~LvLLs~v~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhccchHHHH
Confidence 5667888999999999988876655443
No 405
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.53 E-value=1.5e+02 Score=28.86 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=42.9
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHH-HHHHHH
Q 035503 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISW-NSVILG 442 (788)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~ 442 (788)
..++.....++..|.+.|++.+|+..|-....++...+..++......|...++ ..| ...+-.
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------------dlfi~RaVL~ 150 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------------DLFIARAVLQ 150 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------------HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------------hHHHHHHHHH
Confidence 356667788888888888888888777544333333332233333333333332 222 112234
Q ss_pred HHhcCCHHHHHHHHHHhh
Q 035503 443 FLRNGQMNEAKDMFLQMQ 460 (788)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~ 460 (788)
|...++...|...++...
T Consensus 151 yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFT 168 (260)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 566778888887777664
No 406
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=63.38 E-value=27 Score=29.97 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=46.7
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcH
Q 035503 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723 (788)
Q Consensus 656 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 723 (788)
.+.|.++.+-|. ........+......|++.-|..+.+.++..+|++..+....+++|.+.|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 355666666663 23344455666778999999999999999999999999999999988877544
No 407
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.37 E-value=1.5e+02 Score=28.93 Aligned_cols=66 Identities=9% Similarity=-0.003 Sum_probs=51.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCChhhHHHHHHHHHhCCCchHHHHHHHH
Q 035503 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQE 493 (788)
Q Consensus 428 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (788)
+..++..+...++..+++.+++..-.++++..... +..-|...|..+|..-...|+..-...+.++
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 45677778888899999999999999888887444 5566888899999999999987665555543
No 408
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.16 E-value=17 Score=23.80 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=13.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc
Q 035503 575 MISGYAMHGLAVEALALFKNLQQK 598 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~ 598 (788)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445556666666666666665543
No 409
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=61.54 E-value=1.6e+02 Score=29.30 Aligned_cols=121 Identities=14% Similarity=0.043 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc------cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChH
Q 035503 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSH------AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657 (788)
Q Consensus 584 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 657 (788)
-.+++..++++....+ .|-.......|.++-. .-+|.....+|+.+. .+.|++.+-.+-..++....-.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhHH
Confidence 3567888888887777 4777777777765432 235666677777664 45666543333344455555567
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 035503 658 EALRVILTMPCDP----DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 658 ~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
.++..++.+..+| -...+..-...+.+.|+.++|...|++++.+.++...-
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 7777777764332 23344455566888899999999999999998885443
No 410
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.43 E-value=85 Score=25.29 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 518 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
..++|..+.+.+...+- ....+-..-+..+.+.|++++|+..=.....||...|-+|. -.+.|-.+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 34555555555555443 22222222334455666666664333344445555554442 3455666666666665544
Q ss_pred cC
Q 035503 598 KG 599 (788)
Q Consensus 598 ~~ 599 (788)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 33
No 411
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.55 E-value=15 Score=40.98 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHH
Q 035503 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
..++++.+.+.+...--| .++|.-+.+.|-++-|+.+.+.=...+ .+...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 355666666555422211 123444566777777766654332222 23456899999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHH
Q 035503 662 VILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 662 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 730 (788)
...+.. |..+|..|+.....+|+.+-|+..|++.... ..|..+|.-.|+.++-.++.+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf--------ekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF--------EKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh--------hheeEEEEEeCCHHHHHHHHH
Confidence 888773 6779999999999999999999999886543 334445555555554444333
No 412
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=59.54 E-value=2.9e+02 Score=30.78 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=25.7
Q ss_pred HHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
+.+.+-.+...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.++|+......+-+.+
T Consensus 397 L~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 397 LPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp GGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333333444455666677777777777776665544311 1223444455555566555544444443
No 413
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=59.16 E-value=3e+02 Score=30.95 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=17.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 035503 575 MISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
+...+...|+.++|.....+...
T Consensus 583 l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 583 LADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 44557788999999888777543
No 414
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.02 E-value=3.5e+02 Score=31.56 Aligned_cols=209 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHh---CCCCCCHHHHHHHHHHhhccCch--HHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLE---TGIKPSTTTITCALSACTDVASL--RNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
|..|+..|...|+.++|+++|.+... ....--...+-.++.-....+.. +-..++-+...+..+.....++...-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc------
Q 035503 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL------ 619 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------ 619 (788)
.--+..=..+..+..+.. ...+-++.+++.+....-.++..-.+.++..|...=+
T Consensus 587 ~~~~~sis~~~Vl~~l~~-------------------~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~ 647 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKS-------------------KEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTD 647 (877)
T ss_pred hhhhccCCHHHHHHHhhh-------------------hCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCch
Q ss_pred ----------HHHHHHHHHhcHhhcCCCCC------cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 035503 620 ----------VNEGLELFVGMFSDHQVKPS------MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCV 683 (788)
Q Consensus 620 ----------~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 683 (788)
+.+=...+.+....+...+. ...|....-.++|.|+.++|+.++-.
T Consensus 648 ~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~------------------ 709 (877)
T KOG2063|consen 648 GKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVH------------------ 709 (877)
T ss_pred hccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHH------------------
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 684 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
..+|++.|........+-++.+...|..+..+|
T Consensus 710 ~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 710 ELDDIDAAESYCLPQYESDKTNKEIYLTLLRIY 742 (877)
T ss_pred HhcchhHHHHHHHHhccCCCcccHHHHHHHHHH
No 415
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.81 E-value=14 Score=30.95 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=27.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHh
Q 035503 54 LSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGC 89 (788)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 89 (788)
+..-|.-.+|-.+|+.|+.+|.+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3455777889999999999998887 588888765
No 416
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=57.77 E-value=2e+02 Score=28.45 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---hHHHHHHHHhhccCcHHHHHHHH
Q 035503 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDS---ITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 574 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
.|..+-.+.|+..+|.+.|+.+.+. .|-. .....|+.+|.....+.+...++
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666778888888887776543 2211 12334555555554444444333
No 417
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.72 E-value=2.7e+02 Score=30.16 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=9.8
Q ss_pred CchHHHHHHHHHhCC
Q 035503 706 PGNYVALSNAYAASG 720 (788)
Q Consensus 706 ~~~~~~l~~~~~~~g 720 (788)
..++..+..+|....
T Consensus 483 ~pal~~lv~lY~~r~ 497 (665)
T KOG2422|consen 483 LPALMLLVKLYANRN 497 (665)
T ss_pred chHHHHHHHHHHhhh
Confidence 446777777776654
No 418
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.52 E-value=2.4e+02 Score=29.16 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=19.6
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhh
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDI 563 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (788)
-...+...+...+...|+.+.|.+++++
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleR 65 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLER 65 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566666777777778887777766654
No 419
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=57.43 E-value=24 Score=22.20 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.+|..||.+-...+++++|..-|++.++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999888887653
No 420
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=56.46 E-value=84 Score=29.40 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=8.2
Q ss_pred hhcCChHHHHHHHHh
Q 035503 651 SRCGNLDEALRVILT 665 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~ 665 (788)
.|.|..++|+++.+.
T Consensus 114 iR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 114 IREGKTEEALEFAQT 128 (228)
T ss_pred HHhhhHHHHHHHHHH
Confidence 455555666555544
No 421
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.42 E-value=60 Score=30.43 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=54.5
Q ss_pred hhccCcHHHHHHHHHhcHhhc---CCCCC--cchHHHHHHHHhhcCChHH-------HHHHHHhC----C--CC--CCHH
Q 035503 614 CSHAGLVNEGLELFVGMFSDH---QVKPS--MEHFGCVVNLLSRCGNLDE-------ALRVILTM----P--CD--PDAH 673 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~-------A~~~~~~~----~--~~--p~~~ 673 (788)
+.....+++|++.|..++-.. +-+|. ...+..++++|...|+.+. |++.|.++ . .. .+..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 344556667766666544322 22333 3344577888888888544 44444443 1 11 1223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
...-++....+.|+.++|.+.+.+++...-.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4445566678899999999999999875433
No 422
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.66 E-value=23 Score=32.59 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 035503 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703 (788)
Q Consensus 668 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 703 (788)
..|++..+..++.++...|+.++|....+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345666666666666666666666666666666666
No 423
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.64 E-value=23 Score=36.79 Aligned_cols=102 Identities=12% Similarity=0.128 Sum_probs=73.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHH-HHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhc
Q 035503 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI-LNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRC 653 (788)
Q Consensus 576 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 653 (788)
+......+.++.|+.++.+.++. .||...|... ..++.+.+++..|+.=...++ .+.|+ ...|..-+.++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kai---e~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAI---ELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhh---hcCchhhheeeeccHHHHhH
Confidence 45566788999999999999884 6876655444 367889999999988777776 34465 45555556667777
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 035503 654 GNLDEALRVILTM-PCDPDAHIIGSLLSTC 682 (788)
Q Consensus 654 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 682 (788)
+++.+|...|+.. ...|+-......+.-|
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 8888888888877 4566665555555554
No 424
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.62 E-value=1.3e+02 Score=29.21 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=13.0
Q ss_pred HHHHHhCCCchHHHHHHHHHH
Q 035503 475 ISGLTQNSCGNEAILFFQEML 495 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~ 495 (788)
|.+++..++|.+++...-+-.
T Consensus 90 IQALAEmnrWreVLsWvlqyY 110 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYY 110 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHh
Confidence 566677777777666544443
No 425
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.56 E-value=26 Score=36.16 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=16.7
Q ss_pred CCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 705 NPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 705 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
+..+++.+|.+|...+|+.+|.+.|..+
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666665554
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.52 E-value=45 Score=26.24 Aligned_cols=30 Identities=17% Similarity=0.021 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEP 703 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 703 (788)
....++......|++++|...+++++++-.
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344455667777888888888888887643
No 427
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.55 E-value=39 Score=22.57 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=29.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 035503 52 SSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQG 88 (788)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 88 (788)
-...+.|...++..++++|.+.|+..++..+..++..
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3445678888888999999999999888888877754
No 428
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=51.22 E-value=2.6e+02 Score=30.24 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCCC--hh---hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc
Q 035503 542 TSLVDMYAKCGNIHQAKRVFDISPSKE--LP---VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616 (788)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 616 (788)
..++.-|.+.+++++|..++..|.=.. .. +.+.+++.+.+..-.++.+..++.+...=..|....-......|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 356778889999999999998775321 11 2334445555554445555555554433222221111111111110
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 692 (788)
-=.+-|. .+...+.|.+++++|..+.-.+. +...+..+-......|+.+.|.
T Consensus 492 -~V~~~aR--------------------RfFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 492 -PVSDLAR--------------------RFFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred -HHHHHHH--------------------HHHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 0000111 23345567788888877766553 3345555555555667666654
No 429
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.04 E-value=3e+02 Score=28.42 Aligned_cols=167 Identities=14% Similarity=0.089 Sum_probs=85.5
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHhhccCcHHHHHHHHH
Q 035503 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK---GIDPDSITFTNILNACSHAGLVNEGLELFV 628 (788)
Q Consensus 552 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 628 (788)
++.+.-..++..- .-.+.++-.+...+..+|+...|.+++++.+-. .+.|. |..+.. -...|..
T Consensus 24 ~Dp~~l~~ll~~~-PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~---F~~~~~-~~~~g~~-------- 90 (360)
T PF04910_consen 24 HDPNALINLLQKN-PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPS---FSPFRS-NLTSGNC-------- 90 (360)
T ss_pred cCHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---hhhhhc-ccccCcc--------
Confidence 3444444444221 123456666777778888888888777775421 00000 000000 0000100
Q ss_pred hcHhhcCCCCCcchHH---HHHHHHhhcCChHHHHHHHHhC-CCCC--CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhc
Q 035503 629 GMFSDHQVKPSMEHFG---CVVNLLSRCGNLDEALRVILTM-PCDP--DAHIIGSLLSTC-VKSNETELAEYISEHLLQL 701 (788)
Q Consensus 629 ~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~ 701 (788)
.-.+...-+...|. ..+..+.+.|-+..|+++.+-+ ..+| |+....-.+..| .+.++++--+.+++.....
T Consensus 91 --rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 91 --RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred --ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Confidence 00111222333333 3456677788888888877666 3333 333334444444 4567777777777665442
Q ss_pred CC-----CCCchHHHHHHHHHhCCCc---------------HHHHHHHHHHH
Q 035503 702 EP-----DNPGNYVALSNAYAASGRW---------------NEVSQVRDIMK 733 (788)
Q Consensus 702 ~p-----~~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~~~ 733 (788)
.. .-|..-+..+-++...++. ++|...+++..
T Consensus 169 ~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 169 CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHH
Confidence 11 1345666777777777777 67777666554
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.89 E-value=67 Score=28.83 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=31.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHH
Q 035503 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 679 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
...|.+.|.+++|.+++++..+ +|++...-..|..+-.+.+.+..-++
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 4457788888888888888877 77766555555555555554444443
No 431
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=50.26 E-value=34 Score=33.26 Aligned_cols=80 Identities=6% Similarity=0.002 Sum_probs=52.8
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGS-LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 636 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
...|+..|...+.--.+.|.+.+.-.++.++ ...| ++..|-. -..-+...++++.++.++.+.+.++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3445555554444444556666666666666 2333 4445543 22235678999999999999999999999998765
Q ss_pred HHH
Q 035503 713 SNA 715 (788)
Q Consensus 713 ~~~ 715 (788)
...
T Consensus 183 fr~ 185 (435)
T COG5191 183 FRM 185 (435)
T ss_pred HHH
Confidence 543
No 432
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.80 E-value=1.1e+02 Score=23.69 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=27.9
Q ss_pred hcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHH
Q 035503 229 KCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEA 267 (788)
Q Consensus 229 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 267 (788)
..|+.+.|.++++.++ +..-.|..++.++...|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577788888888877 7777778888877777765444
No 433
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.66 E-value=19 Score=35.59 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=37.0
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAH-IIGSLLSTCVKSNETELAEY 693 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~ 693 (788)
.|.++.|+++|...+ .+.|. ...|..-..++.+.++...|++-++.+ .+.||.. -|..-..+.+..|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai---~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAI---ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred Ccchhhhhccccccc---ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 344555555555443 22232 233334444455555555554444433 2333332 22222333344455555555
Q ss_pred HHHHHHhcCCC
Q 035503 694 ISEHLLQLEPD 704 (788)
Q Consensus 694 ~~~~~~~~~p~ 704 (788)
.+..+.+++-+
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 55555554433
No 434
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.50 E-value=3.4e+02 Score=28.67 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHC---CC-CCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHH
Q 035503 162 LSEKALIGFVEMQED---GV-SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEAR 237 (788)
Q Consensus 162 ~~~~A~~~~~~m~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 237 (788)
..++...+++..... |+ ..+......++..+ .|+...+..+++.+... .......++..+.
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~-------------~~~It~~~v~~~~ 216 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG-------------VDSITLELLEEAL 216 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-------------cCCCCHHHHHHHH
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHC---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC-----ChhHHHHHHHHH
Q 035503 238 KVFDGMIARNVVAWNSMIVGYVQN---GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLD-----ALDEGKQAHAVA 309 (788)
Q Consensus 238 ~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~ 309 (788)
........++...+..+++++.+. ++.+.|+..+..|.+.|..|....-..+..++...| ....+...++.+
T Consensus 217 ~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~ 296 (413)
T PRK13342 217 QKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV 296 (413)
T ss_pred hhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhc
Q 035503 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344 (788)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 344 (788)
...|++.........+-.++.+-+-..+...+...
T Consensus 297 ~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a 331 (413)
T PRK13342 297 ERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAA 331 (413)
T ss_pred HHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHH
No 435
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=49.03 E-value=41 Score=20.18 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 687 ETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 687 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
.++.|..+|++.+...|+ +..|...+.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 468888999999888877 666666543
No 436
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.53 E-value=48 Score=30.50 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=19.7
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 635 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
...|++..|..++.++...|+.++|.....++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566666666666666666666666665555
No 437
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=47.58 E-value=3e+02 Score=28.42 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=11.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHH
Q 035503 607 FTNILNACSHAGLVNEGLELFV 628 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~ 628 (788)
.+.|++.|...+.++.|..+..
T Consensus 212 iN~LLr~yL~n~lydqa~~lvs 233 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVS 233 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhh
Confidence 3444445555555555555443
No 438
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=47.10 E-value=3e+02 Score=27.26 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=8.7
Q ss_pred CchHHHHHHHHHHhCC
Q 035503 483 CGNEAILFFQEMLETG 498 (788)
Q Consensus 483 ~~~~A~~~~~~m~~~~ 498 (788)
+..+|..+|.+..+.|
T Consensus 128 d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 128 DLVKALKYYEKAAKLG 143 (292)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4455555555555554
No 439
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.87 E-value=45 Score=32.41 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=45.2
Q ss_pred HhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 650 LSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
..+.|+.++|..+|+.+ ...|+. .....++...-.+++.-+|-.+|-+++.++|.+..++.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 35688888888888776 444443 3455555555666888889999999999999887765543
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.74 E-value=27 Score=29.29 Aligned_cols=32 Identities=31% Similarity=0.374 Sum_probs=25.1
Q ss_pred cCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHh
Q 035503 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC 192 (788)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 192 (788)
..|.-.+|-.+|+.|+++|-+|| .|..|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34777889999999999999998 466666543
No 441
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.65 E-value=85 Score=20.97 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=25.7
Q ss_pred HHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035503 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILS 291 (788)
Q Consensus 257 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 291 (788)
...+.|-..++..+++.|.+.|+..+...+..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34467777788888888888887777777766664
No 442
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.50 E-value=2e+02 Score=24.88 Aligned_cols=76 Identities=5% Similarity=0.130 Sum_probs=44.8
Q ss_pred hHHHHHhHhcCChHHHHHHHhcCC---------CCCcchHHHHHHHHHHCCC-hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035503 221 SSLIDMYGKCGDLEEARKVFDGMI---------ARNVVAWNSMIVGYVQNGL-NEEAIRVFYEMTLEGVEPTRVSVTSIL 290 (788)
Q Consensus 221 ~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ll 290 (788)
|.++.-....+++.....+++.+. ..+-..|+.++.+.....- ---+..+|..|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444431 1244567777777754444 345667777777777777777787777
Q ss_pred HHhcCc
Q 035503 291 SASANL 296 (788)
Q Consensus 291 ~~~~~~ 296 (788)
++|.+-
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 776654
No 443
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.79 E-value=2.7e+02 Score=26.17 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=52.5
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC---CcchHH--HHHHHHhhcCChHHHHHHHHhCC---CCCC
Q 035503 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP---SMEHFG--CVVNLLSRCGNLDEALRVILTMP---CDPD 671 (788)
Q Consensus 600 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~---~~p~ 671 (788)
+.+...-++.|+--|.-...+.+|.+.|. +..++.| +...+. .-+......|+.++|++.++... .+.|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa---~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFA---KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhc---cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 34444445555554444444444544444 2236655 233333 45666688889999988888872 2223
Q ss_pred H--HHHHHHHHH--HHhcCCHHHHHHHHHHHHh
Q 035503 672 A--HIIGSLLST--CVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 672 ~--~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 700 (788)
. ..+...... ..+.|..++|+.+++.=+.
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 2 233322222 3466777777777665443
No 444
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.74 E-value=1.3e+02 Score=25.07 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 035503 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR 531 (788)
Q Consensus 489 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 531 (788)
.-++.+..-++.|++......+.+|.+.+++..|..+++-+..
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444445566666666666666666666666666655543
No 445
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=42.58 E-value=2.5e+02 Score=28.97 Aligned_cols=55 Identities=13% Similarity=-0.048 Sum_probs=32.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH----HHHHHHHhh--ccCcHHHHHHHHHh
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSIT----FTNILNACS--HAGLVNEGLELFVG 629 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~--~~g~~~~A~~~~~~ 629 (788)
.+..+...+++..|.++|+++......|.... +..+..+|. ..-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34456677888888888888887755444333 222333332 34456666666653
No 446
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.45 E-value=1.5e+02 Score=24.19 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHCCChhHHHHHHHHHHH
Q 035503 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTL 276 (788)
Q Consensus 249 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 276 (788)
.-|..++.-|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3688899999999999999999998877
No 447
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=42.42 E-value=4.2e+02 Score=27.70 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc
Q 035503 543 SLVDMYAKCGNIHQAKRVFDISPSK---ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616 (788)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 616 (788)
.|+.-|...|+..+|....+++.-| ....+.+++.+..+.|+-..-+.+++..-..| ..|.+.+-.+|.+
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 4666677778888888777766543 33466777777777777776666666655444 2344444444433
No 448
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.05 E-value=1.1e+03 Score=32.47 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=36.3
Q ss_pred hcCChHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 652 RCGNLDEALRVILTMPCD---PD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 652 ~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
..+....++++++.-... .+ +..+.--+....+.|+.++|..+|..+.+++-.-+..|...|.
T Consensus 2787 ~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~ 2854 (3550)
T KOG0889|consen 2787 NKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGK 2854 (3550)
T ss_pred ChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344666677777665321 11 2223333334567788888888888888866544444444443
No 449
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=41.82 E-value=1.9e+02 Score=27.42 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCC
Q 035503 684 KSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 684 ~~g~~~~A~~~~~~~~~~~p~ 704 (788)
..++.+.|...++++++++|+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCC
Confidence 446778999999999999988
No 450
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.24 E-value=3.4e+02 Score=26.24 Aligned_cols=120 Identities=9% Similarity=0.053 Sum_probs=82.9
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 655 NLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETE-LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 655 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
++.+-+++++++ ..+.+-.+|..--......|+.. .-+++.+.++..+.++-.+|...-+++..-+.|+.-+.+-..
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 466667777776 23345667776666666667777 778888999999999999999999999999999999999999
Q ss_pred HHHCCCccCCceeEEEECCeEEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 035503 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780 (788)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 780 (788)
+++..+.++.... -..+.+....+ --....+..++.-...+|.
T Consensus 173 Lle~Di~NNSAWN-----~Ryfvi~~~~~-~~~~~~le~El~yt~~~I~ 215 (318)
T KOG0530|consen 173 LLEEDIRNNSAWN-----QRYFVITNTKG-VISKAELERELNYTKDKIL 215 (318)
T ss_pred HHHHhhhccchhh-----eeeEEEEeccC-CccHHHHHHHHHHHHHHHH
Confidence 9999887766531 12222222222 2233455556655555443
No 451
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.12 E-value=80 Score=22.52 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=13.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHH
Q 035503 473 TLISGLTQNSCGNEAILFFQEML 495 (788)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~ 495 (788)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44556666666666666665554
No 452
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.97 E-value=77 Score=22.60 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 436 WNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 436 ~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
-..++.+|...|++++|.++.+.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334555556666666666555554
No 453
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.99 E-value=6e+02 Score=28.72 Aligned_cols=139 Identities=16% Similarity=0.122 Sum_probs=81.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcC
Q 035503 577 SGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654 (788)
Q Consensus 577 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 654 (788)
-++..-|+-++|..+.++|.... .|-. .-...+.-+|+-.|+-....+++--... ....|+.-+..++-.+.-..
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEec
Confidence 34556677788888888887643 3311 1123344467777777555555543332 33344555555555666677
Q ss_pred ChHHHHHHHHhCCC--CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhCC
Q 035503 655 NLDEALRVILTMPC--DPDAH--IIGSLLSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALSNAYAASG 720 (788)
Q Consensus 655 ~~~~A~~~~~~~~~--~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g 720 (788)
+++.....+.-+.. .|-.. +-.+|+-+|.-.|+ .+|+.+++.+.. ||.+ ..+...++.+..++.
T Consensus 586 dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhcc
Confidence 77777777666632 23322 33345555655554 568888888877 6653 345666666666655
No 454
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.88 E-value=1.9e+02 Score=26.67 Aligned_cols=90 Identities=12% Similarity=0.082 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH-HHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeE
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN-AYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (788)
....++..|...||++.|-+++--++...+-|......+|- ++.+.+.-....+.++.|...-.....-..........
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~~ 122 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRIIA 122 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhccc
Confidence 45667778888899999999998888876666666666644 66666666655577777644322111111111122234
Q ss_pred EEEEcCCCCCC
Q 035503 753 HVFVACDRSHP 763 (788)
Q Consensus 753 ~~~~~~~~~~~ 763 (788)
..|-+|.+.|-
T Consensus 123 pvfrsGs~t~t 133 (199)
T PF04090_consen 123 PVFRSGSRTHT 133 (199)
T ss_pred ccccCCCcccc
Confidence 66778887773
No 455
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.57 E-value=1.5e+02 Score=24.74 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 667 PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 667 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
..-|++......+++|++-+|+..|+++++-+...-++....|-.
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 456888899999999999999999999999887666654444433
No 456
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.63 E-value=5.8e+02 Score=28.79 Aligned_cols=174 Identities=14% Similarity=0.203 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchh----------HHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCC
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII----------SWNSVILGFLRNGQMNEAKDMFLQMQSL--GVQP 466 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~ll~~~~~~g~~~~A~~~~~~~~~~--g~~~ 466 (788)
.+...++-.|....+++..+++.+.+... ||.. .|.-.++---+-|+-++|+...-.+.+. .+.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34556667777778888888888888764 3322 2222233333457777888777766332 2455
Q ss_pred ChhhHHH-------HHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-chHHHHHHHHHHHHcCCCCCh
Q 035503 467 NLITWTT-------LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA-SLRNGRAIHGYLIRHDLCLPT 538 (788)
Q Consensus 467 ~~~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~ 538 (788)
|...... +-+.|...+..+.|.+.|++..+ +.|+..+=..+...+...| .++.-.++-.
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~----------- 345 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQ----------- 345 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHHH-----------
Confidence 5433211 11234445566778888888876 5676543222222222222 1222211111
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 035503 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598 (788)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 598 (788)
+-..|...+++.|.++.-.+.++- ...+.+-.-.+++.+|++.-+.|.+.
T Consensus 346 -IgmkLn~LlgrKG~leklq~YWdV---------~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 346 -IGMKLNSLLGRKGALEKLQEYWDV---------ATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred -HHHHHHHHhhccchHHHHHHHHhH---------HHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 122345566777877777776652 22334445567888888888888764
No 457
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.40 E-value=4.4e+02 Score=26.40 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCC--------ChhhHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSK--------ELPVYN-AMISGYAMHGLAVEALALFKNLQQKGIDPDS---- 604 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---- 604 (788)
..++...+..|++.|+.+.|.+.+...-++ |+..+. .|.-.|..+.-..+-++..+.+.+.|-.-+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 345556677788888888887777654432 222222 2333444444455556666666666655433
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHh
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 632 (788)
.+|..+- |....++.+|..+|-....
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 3343332 4455677888887776654
No 458
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.98 E-value=2.3e+02 Score=29.10 Aligned_cols=136 Identities=10% Similarity=-0.027 Sum_probs=84.3
Q ss_pred hhHHHHHHH--HHhCCCHHHHHHHHHHHHHcCCCCCHhHHH--------HHHHHhhccCcHHHHHHHHHhcHhhcCCCCC
Q 035503 570 PVYNAMISG--YAMHGLAVEALALFKNLQQKGIDPDSITFT--------NILNACSHAGLVNEGLELFVGMFSDHQVKPS 639 (788)
Q Consensus 570 ~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 639 (788)
.+|-.++-. +..++++.+|.++-+..+..-..-|..++. .+-.++...|+...-..++....+...+.-|
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Confidence 345444333 345688889988887765542233444433 3333456677776666666655554444444
Q ss_pred cc----hHHHHHHHHhhcCChHHHHHHHHhCCCCCC--H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 640 ME----HFGCVVNLLSRCGNLDEALRVILTMPCDPD--A----HIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 640 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
.. ..++|...|...+.++.|..+..+...+.. . ....-++..-..++++..|.+.+-.++...|++
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 33 334666777788899999999888843211 1 122223444567789999999999999999973
No 459
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.97 E-value=68 Score=31.45 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 035503 250 AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288 (788)
Q Consensus 250 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 288 (788)
-||..|....+.|++++|+.++++..+.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 467888888899999999999999988887655555533
No 460
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=35.96 E-value=4e+02 Score=26.84 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=30.2
Q ss_pred HHhhccCcHHHHHHHHHhcHhhcCC--CCCcchHH--HHHHHHhhcCChHHHHHHHHhC
Q 035503 612 NACSHAGLVNEGLELFVGMFSDHQV--KPSMEHFG--CVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 612 ~~~~~~g~~~~A~~~~~~~~~~~~~--~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
....+.++.++|+++++++...... .|+...|. .++.++...|++.++.+.+.+.
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~ 141 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDL 141 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344555677777777776553222 23333332 4555556666666666665544
No 461
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.83 E-value=2.4e+02 Score=22.96 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77888888888888888888888766
No 462
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.53 E-value=1.4e+02 Score=32.46 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=22.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
....+.|.|.++++++-+.+|.++-.......+....|.-++|+......
T Consensus 405 L~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 405 LKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred hhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444333
No 463
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.47 E-value=2.7e+02 Score=23.43 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=28.6
Q ss_pred HHHHHHHHHHh--cCCCCCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 690 LAEYISEHLLQ--LEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 690 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
.+..+|+.+.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666655 3445666777777778888888888887764
No 464
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=35.16 E-value=7.7e+02 Score=28.59 Aligned_cols=85 Identities=9% Similarity=0.014 Sum_probs=41.3
Q ss_pred HHhCCCchHHHHHHHHHHhCCCCCCHH-------HHHHHHH-HhhccCchHHHHHHHHHHHHcCC----CCChhHHHHHH
Q 035503 478 LTQNSCGNEAILFFQEMLETGIKPSTT-------TITCALS-ACTDVASLRNGRAIHGYLIRHDL----CLPTPIVTSLV 545 (788)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~ 545 (788)
.....++++|..++.++...-..|+.. .+..+-. .....|+++++..+.+.....-+ ......+..++
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677888888887776542222211 1222111 12335566666666665554322 12233344444
Q ss_pred HHHHHcCCHHHHHHHHh
Q 035503 546 DMYAKCGNIHQAKRVFD 562 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~ 562 (788)
.+..-.|+++.|..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~ 521 (894)
T COG2909 505 EAAHIRGELTQALALMQ 521 (894)
T ss_pred HHHHHhchHHHHHHHHH
Confidence 45555555555554443
No 465
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=35.12 E-value=4.3e+02 Score=26.58 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=40.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc---CCCCchhHHHH--HHHHHHhcCCHHHHHHHHHHhhh-----CCCCCChh
Q 035503 403 TLLAAYADLGRSGEASRLFYQMQLE---GISPNIISWNS--VILGFLRNGQMNEAKDMFLQMQS-----LGVQPNLI 469 (788)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~--ll~~~~~~g~~~~A~~~~~~~~~-----~g~~~~~~ 469 (788)
.++...-+.++.++|+++++++.+. .-.|+.+.|.. ....+...|+..++.+.+++..+ .|++|++.
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3444445556777888888877654 23455555533 33445667777777777777655 55665443
No 466
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.26 E-value=5.8e+02 Score=26.86 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=10.2
Q ss_pred HHHhHhcCChHHHHHHHhc
Q 035503 224 IDMYGKCGDLEEARKVFDG 242 (788)
Q Consensus 224 i~~~~~~g~~~~A~~~~~~ 242 (788)
+...++.|+.+....+++.
T Consensus 72 L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 3444555666665555553
No 467
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.01 E-value=1.7e+02 Score=29.24 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=39.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcC-CCC--CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHh
Q 035503 576 ISGYAMHGLAVEALALFKNLQQKG-IDP--DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLS 651 (788)
Q Consensus 576 ~~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 651 (788)
++-|.+.+++..|...|.+-+... -.| +.+.|+.-..+-...|++..++.-....+ .+.|+ ...|..=+.++.
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al---~~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL---KLKPTHLKAYIRGAKCLL 164 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---hcCcchhhhhhhhhHHHH
Confidence 334555555555555555544332 112 23344444444444555555544444333 34444 233333344444
Q ss_pred hcCChHHHHHHHHh
Q 035503 652 RCGNLDEALRVILT 665 (788)
Q Consensus 652 ~~g~~~~A~~~~~~ 665 (788)
...++++|..+.++
T Consensus 165 eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 165 ELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHhh
Confidence 44554444444433
No 468
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.69 E-value=2.2e+02 Score=24.70 Aligned_cols=63 Identities=10% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 035503 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552 (788)
Q Consensus 489 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (788)
++.+.+.+.|++++..-. .++..+...++.-.|..+++.+.+.++..+..+...-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
No 469
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.34 E-value=2.9e+02 Score=23.21 Aligned_cols=43 Identities=12% Similarity=0.285 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 035503 416 EASRLFYQMQLEGISPN-IISWNSVILGFLRNGQMNEAKDMFLQ 458 (788)
Q Consensus 416 ~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (788)
.+.++|..|...|+... ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66677777776655433 34455555666666666666666653
No 470
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.24 E-value=6e+02 Score=26.47 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=24.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCChh--hHHHHHHHHH--hCCCchHHHHHHHHHH
Q 035503 443 FLRNGQMNEAKDMFLQMQSLGVQPNLI--TWTTLISGLT--QNSCGNEAILFFQEML 495 (788)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~ 495 (788)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44556666666666666544 333333 2233333333 2233445555555544
No 471
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.08 E-value=4.6e+02 Score=25.08 Aligned_cols=39 Identities=5% Similarity=-0.060 Sum_probs=16.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 035503 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478 (788)
Q Consensus 440 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 478 (788)
+..+-+.++++++...++++...+...+..-.+.+..+|
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 334444455555555555544444444444444444333
No 472
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.44 E-value=5.5e+02 Score=25.76 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=11.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHh
Q 035503 644 GCVVNLLSRCGNLDEALRVILT 665 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~ 665 (788)
...+.-|++.|+.+.|.+.+.+
T Consensus 108 ~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 108 LRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHhccHHHHHHHHHH
Confidence 3444555555555555555544
No 473
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.27 E-value=2.6e+02 Score=30.80 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHhHhcCChHHHHHHHhcCCCCCcc------hHHHHHHHHHHCCCh------hHHHHHHHHHHHcCCCCCHHHHHHH
Q 035503 222 SLIDMYGKCGDLEEARKVFDGMIARNVV------AWNSMIVGYVQNGLN------EEAIRVFYEMTLEGVEPTRVSVTSI 289 (788)
Q Consensus 222 ~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~t~~~l 289 (788)
+|..+|..+|++-.+..+++.....+-. .+|.-|+...++|++ +.|.+++++..-.| |..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~---d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNG---DSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC---cchHHHHH
Q ss_pred HHHhcCcCChhHHHHHHHHHHHh
Q 035503 290 LSASANLDALDEGKQAHAVAVIN 312 (788)
Q Consensus 290 l~~~~~~~~~~~a~~~~~~~~~~ 312 (788)
+.+....-......-++...+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~ 132 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHR 132 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHh
No 474
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=31.18 E-value=6.4e+02 Score=26.48 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=53.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHh
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 651 (788)
...|+.-|...|+..+|....+++-. .+--....+.+++.+..+.|+-...+.+++..... ...+-+.|-..|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s-----glIT~nQMtkGf~ 585 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS-----GLITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CceeHHHhhhhhh
Confidence 34678889999999999999887521 12224567888999999999988888888877653 3344455555554
Q ss_pred h
Q 035503 652 R 652 (788)
Q Consensus 652 ~ 652 (788)
|
T Consensus 586 R 586 (645)
T KOG0403|consen 586 R 586 (645)
T ss_pred h
Confidence 3
No 475
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=31.08 E-value=1.6e+02 Score=30.83 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=31.4
Q ss_pred HHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 660 LRVILTMPCDPDAH--IIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 660 ~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
..+|..+...|.+. ++...+..+.+.+++..|-.+.++++++.|..
T Consensus 286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 34455556665553 56666777889999999999999999999873
No 476
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.62 E-value=1.7e+02 Score=22.48 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=24.4
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCCh
Q 035503 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLN 264 (788)
Q Consensus 228 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 264 (788)
......+.|.++++.++.++..+|..+..++...|..
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 3444566777777777777777777777776665543
No 477
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.17 E-value=99 Score=30.38 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHH
Q 035503 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN 437 (788)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 437 (788)
|+..|....+.|++++|+.+++++.+.|+.--..+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 6788888888899999999999888888765444443
No 478
>PHA02875 ankyrin repeat protein; Provisional
Probab=29.43 E-value=6.9e+02 Score=26.27 Aligned_cols=207 Identities=9% Similarity=-0.074 Sum_probs=97.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCccc--HHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchh--HhhHHHHHHhc
Q 035503 53 SLSKEKQIREAVDLLTEMKCRNFQIGPEI--YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEY--VETKLVVFYAK 128 (788)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 128 (788)
.-++.|+.+.+ +.+.+.|..|+... -...+..++..|+.+ +.+.+++.| ..++.. -....+...+.
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~g--a~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHG--AIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCC--CCccccCCCcccHHHHHHH
Confidence 33455666554 44445676665432 223333444566654 334445555 222211 12334556667
Q ss_pred cCChHHHHHHhccCCCCC----cccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHhcccCCchHHH
Q 035503 129 CDALDVASRLFCRLRVKN----VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFV--LPNVLKACGALGWVGFGR 202 (788)
Q Consensus 129 ~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~ 202 (788)
.|+.+....+++.-...+ ..-++ .+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+...
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred CCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 888888888876543221 11122 23333444553 45555666676554332 122333444556654443
Q ss_pred HHHHHHHHHcCCCc---hhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHHCCChhHHHHHHHHHHH
Q 035503 203 AVHGYVLKVGFDGC---VFVASSLIDMYGKCGDLEEARKVFDGMIARNVV---AWNSMIVGYVQNGLNEEAIRVFYEMTL 276 (788)
Q Consensus 203 ~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~ 276 (788)
. +++.|..++ ..-.+ .+...+..|+.+-+.-+++.-..++.. .....+...+..|+.+ +.+.+.+
T Consensus 153 ~----Ll~~g~~~~~~d~~g~T-pL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~ 223 (413)
T PHA02875 153 L----LIDHKACLDIEDCCGCT-PLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIK 223 (413)
T ss_pred H----HHhcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHH
Confidence 3 344443322 22222 334445567777666666654443322 1123344344555543 4444455
Q ss_pred cCCCCCH
Q 035503 277 EGVEPTR 283 (788)
Q Consensus 277 ~g~~p~~ 283 (788)
.|..++.
T Consensus 224 ~gad~n~ 230 (413)
T PHA02875 224 RGADCNI 230 (413)
T ss_pred CCcCcch
Confidence 6655553
No 479
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=29.43 E-value=5.7e+02 Score=25.33 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=9.1
Q ss_pred CCchhHHHHHHHHHHhcC
Q 035503 430 SPNIISWNSVILGFLRNG 447 (788)
Q Consensus 430 ~~~~~~~~~ll~~~~~~g 447 (788)
+|+..+-......+...|
T Consensus 220 Ppnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 220 PPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred CCcchhHHHHHHHHhHhh
Confidence 566555555544444443
No 480
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=29.35 E-value=1.2e+02 Score=31.29 Aligned_cols=20 Identities=25% Similarity=0.061 Sum_probs=11.4
Q ss_pred HHHHHHhhcCChHHHHHHHH
Q 035503 645 CVVNLLSRCGNLDEALRVIL 664 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~ 664 (788)
.|+.+|.+.++.+-|+...-
T Consensus 233 klv~CYL~~rkpdlALnh~h 252 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSH 252 (569)
T ss_pred HHHHhhhhcCCCchHHHHHh
Confidence 45555666666666655443
No 481
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.11 E-value=7.3e+02 Score=26.49 Aligned_cols=122 Identities=11% Similarity=-0.005 Sum_probs=78.3
Q ss_pred HHHHhCCCchHHHHHHHHHHhCC-CCCC-------HHHHHHHHHH-hhccCchHHHHHHHHHHHHcCCCCChhH--HHHH
Q 035503 476 SGLTQNSCGNEAILFFQEMLETG-IKPS-------TTTITCALSA-CTDVASLRNGRAIHGYLIRHDLCLPTPI--VTSL 544 (788)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~-~~p~-------~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 544 (788)
.+-.-.|++.+|++-+.+|.+.- -.|. ......++.. |+..+.++.|+.-|..+.+.-...+..+ -..+
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 33446799999999888887531 1333 1233444444 4557888888888888877554444333 3456
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCChhhHHH--------HHH--HHHhCCCHHHHHHHHHHHHH
Q 035503 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNA--------MIS--GYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------l~~--~~~~~g~~~~A~~~~~~m~~ 597 (788)
+-.|.+.|+.+.-.++++.+..++..++.. ++. ....++++.||...+.+-.+
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 778888999888888888887765543321 111 12357778888777777554
No 482
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=28.46 E-value=6.3e+02 Score=25.54 Aligned_cols=137 Identities=8% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHHcCC------------HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHH
Q 035503 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGN------------IHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALA 590 (788)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~ 590 (788)
+++.++..| .+...|..++..--..-. .+.-+.++++..+ .+...+..++..+.+..+.++..+
T Consensus 8 l~~~v~~~P-~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 8 LNRRVRENP-HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHhCc-ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHhhc---cCcHHHHHHHHHhcHhhcCCCCCcc----------------hHHHHHHHHh
Q 035503 591 LFKNLQQKGIDPDSITFTNILNACSH---AGLVNEGLELFVGMFSDHQVKPSME----------------HFGCVVNLLS 651 (788)
Q Consensus 591 ~~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~----------------~~~~l~~~~~ 651 (788)
.++++.... +-+...|...+..... .-.++.....|.+.++......... .+..+...+.
T Consensus 87 ~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 87 KWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Q ss_pred hcCChHHHHHHHH
Q 035503 652 RCGNLDEALRVIL 664 (788)
Q Consensus 652 ~~g~~~~A~~~~~ 664 (788)
.+|..+.|...++
T Consensus 166 ~aG~~E~Ava~~Q 178 (321)
T PF08424_consen 166 QAGYTERAVALWQ 178 (321)
T ss_pred HCCchHHHHHHHH
No 483
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.30 E-value=1.2e+02 Score=31.53 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=46.0
Q ss_pred hhhhHHHHHhHhcCChHHHHHHHhcCCC-----------CCcchHHHHHHHHHHCCChhHHHHHHHHHH
Q 035503 218 FVASSLIDMYGKCGDLEEARKVFDGMIA-----------RNVVAWNSMIVGYVQNGLNEEAIRVFYEMT 275 (788)
Q Consensus 218 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 275 (788)
+....|++.++-.||+..|+++++.+.- -.+.++--+.-+|.-.+++.+|++.|....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888889999999999888721 245577778888999999999999998865
No 484
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=28.27 E-value=1.7e+02 Score=29.78 Aligned_cols=74 Identities=14% Similarity=0.087 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEEcCCCCC--CChH
Q 035503 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH--PKTE 766 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 766 (788)
++.+++..+.--.+|+|+++...+ +|.++++++.++|.. .. ...++|+.+. ..-.
T Consensus 28 e~vl~AA~~l~laDPeDSD~N~if-----------~avkiydeL~~~Ged--ve----------VA~VsG~~~~~v~ad~ 84 (344)
T PF04123_consen 28 EAVLDAAVKLALADPEDSDVNAIF-----------GAVKIYDELKAEGED--VE----------VAVVSGSPDVGVEADR 84 (344)
T ss_pred HHHHHHHHHHhcCCcccccHHHHH-----------HHHHHHHHHHhcCCC--eE----------EEEEECCCCCchhhHH
Confidence 455666666667899988887665 788999999988752 11 2356666554 3346
Q ss_pred HHHHHHHHHHHHHHhcCCc
Q 035503 767 EIYATLALLGMHVRLVSKV 785 (788)
Q Consensus 767 ~~~~~l~~~~~~~~~~~~~ 785 (788)
.+.++++++..+....+-+
T Consensus 85 ~I~~qld~vl~~~~~~~~i 103 (344)
T PF04123_consen 85 KIAEQLDEVLSKFDPDSAI 103 (344)
T ss_pred HHHHHHHHHHHhCCCCEEE
Confidence 6777777777666655543
No 485
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.26 E-value=3.2e+02 Score=22.70 Aligned_cols=57 Identities=14% Similarity=0.001 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCChHHHHHHH-------HhC-CCCCC-HHHHHHHH----HHHHhcCCHHHHHHHHHHHHh
Q 035503 644 GCVVNLLSRCGNLDEALRVI-------LTM-PCDPD-AHIIGSLL----STCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~-------~~~-~~~p~-~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~ 700 (788)
..|..++...|++++++... ++- ....| ...|-..+ .++...|+.++|...|+++-+
T Consensus 59 A~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 59 AGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 35556666677766654433 332 23333 33454433 345667889999888887655
No 486
>PRK12798 chemotaxis protein; Reviewed
Probab=27.86 E-value=7.2e+02 Score=26.01 Aligned_cols=191 Identities=11% Similarity=0.114 Sum_probs=94.5
Q ss_pred cCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH-HhCCCchHHHHHHHHHHhCCCCCCH----HHHHHHHHHhhccCchH
Q 035503 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL-TQNSCGNEAILFFQEMLETGIKPST----TTITCALSACTDVASLR 520 (788)
Q Consensus 446 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~ 520 (788)
.|+.+++.+.+..+...-.++....|-.|+.+- ....++.+|+++|+...- ..|.. ..+..-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 566666666666664444555555555555443 334456666666666543 23332 23444444455666666
Q ss_pred HHHHHHHHHHHcC-CCC-ChhHHHHHHHHHHHcC---CHHHHHHHHhhCCC-CChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 521 NGRAIHGYLIRHD-LCL-PTPIVTSLVDMYAKCG---NIHQAKRVFDISPS-KELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 521 ~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
++..+-.+..+.- ..+ -..++..++..+.+.+ +.+.-..++..|.. .-...|..+...-...|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6655544443321 111 1222333333333332 23333444444443 2234666666777777777777766666
Q ss_pred HHHcCCCCCHh-HHHHHHH--HhhccCcHHHHHHHHHhcHhhcCCCCC
Q 035503 595 LQQKGIDPDSI-TFTNILN--ACSHAGLVNEGLELFVGMFSDHQVKPS 639 (788)
Q Consensus 595 m~~~~~~p~~~-~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~p~ 639 (788)
.+...-..+.. .-..|-. +-.-..+++++.+.+..+-.. .+.|.
T Consensus 283 A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~-~L~~~ 329 (421)
T PRK12798 283 ALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRD-KLSER 329 (421)
T ss_pred HHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh-hCChh
Confidence 65543111111 1111111 223455677888888777443 55554
No 487
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.30 E-value=1e+03 Score=27.62 Aligned_cols=111 Identities=10% Similarity=-0.024 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--
Q 035503 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN-- 446 (788)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-- 446 (788)
.+..++.-+...+.+++|++++..-..+. .+-...-.+ ....+.+....+..+.. .-+..-...++..+.+.
T Consensus 532 d~~~vv~~~~q~e~yeeaLevL~~~~~~e--l~yk~ap~L-i~~~p~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~ 605 (911)
T KOG2034|consen 532 DYEFVVSYWIQQENYEEALEVLLNQRNPE--LFYKYAPEL-ITHSPKETVSAWMAQKD---LDPNRLIPPILSYFSNWHS 605 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchh--hHHHhhhHH-HhcCcHHHHHHHHHccc---cCchhhhHHHHHHHhcCCc
Confidence 45566677777778888887776653222 211111111 11222233332222221 11222223334444443
Q ss_pred -CCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCch
Q 035503 447 -GQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485 (788)
Q Consensus 447 -g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 485 (788)
.....+...++-....-...++..+|.++..|++..+-+
T Consensus 606 ~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ 645 (911)
T KOG2034|consen 606 EYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD 645 (911)
T ss_pred cccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc
Confidence 233445555554433333447777888887777655443
No 488
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.93 E-value=3.8e+02 Score=24.36 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=11.0
Q ss_pred HhhccCcHHHHHHHHHhcH
Q 035503 613 ACSHAGLVNEGLELFVGMF 631 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~ 631 (788)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3556666666666665554
No 489
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.89 E-value=2.3e+02 Score=20.56 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=23.4
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 035503 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443 (788)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 443 (788)
+....++.++...+...-.++++..+.++...|. .+..+|..-+..+
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3444555555555555555666666666665553 3344444333333
No 490
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.65 E-value=2.1e+02 Score=25.61 Aligned_cols=46 Identities=9% Similarity=-0.153 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhccc
Q 035503 150 WAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGAL 195 (788)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 195 (788)
-..++..+...+++-.|.++++.+.+.+..++..|....|..+...
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~ 73 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQ 73 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHC
Confidence 3444444444445555556666665555544544444444444333
No 491
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=26.60 E-value=6.9e+02 Score=25.37 Aligned_cols=149 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 035503 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEG 302 (788)
Q Consensus 223 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 302 (788)
+.+.++|.++.+.+..+-+.+..--.....++..++-...-.+...+.+.+..+.. ||......++++.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhHH
Q ss_pred HHHHHHHHHhCCCCchhHHHHHH-HHHHhcCChhHHHHHHHhcCCCC-chhHHHHHHHHHHcCCCchhHHHHH
Q 035503 303 KQAHAVAVINGMELDNVLGSSII-NFYSKVGLLEDAEVVFSRMVERD-IVTWNLLIASYVQSGQSDVVVASSI 373 (788)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~~~~~~l 373 (788)
...+..++......+..+...+. +++....+.+.+..+++++-+.+ -..++.+..-++.--.....+...|
T Consensus 250 ~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfaDLv~iP~lR~~~L~~L 322 (340)
T PF12069_consen 250 AILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFADLVMIPELRPPVLMLL 322 (340)
T ss_pred HHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHHHHHhchhhhHHHHHHh
No 492
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.37 E-value=3e+02 Score=21.15 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=26.5
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHH
Q 035503 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 588 (788)
...+.+.|.++++.++.++..+|..+.+++...|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 345567777777777777777777777777766654433
No 493
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=26.20 E-value=1.1e+03 Score=28.31 Aligned_cols=126 Identities=7% Similarity=0.042 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc-------cCChhHHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 035503 369 VASSIVDMYAKCERIDNAKQVFNSII-------LRDVVLWNTLLAAYADL-GRSGEASRLFYQMQLEGISPNIISWNSVI 440 (788)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 440 (788)
..-..+.-+...+++.+|..+.++-. ..|+..|-.=+..+.++ ++.+---.++..+.+..+. ...|....
T Consensus 696 LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt--~tmY~~~~ 773 (928)
T PF04762_consen 696 LVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVT--KTMYKDTY 773 (928)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccc--cccccccc
Confidence 34455667778899999998887543 34555554444444433 3333333333333332211 11111111
Q ss_pred ------------HHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCC--CchHHHHHHHHHHhC
Q 035503 441 ------------LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS--CGNEAILFFQEMLET 497 (788)
Q Consensus 441 ------------~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 497 (788)
......+++...-+.+...... ..-.......++.+|.+.+ ++++|+....++.+.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 774 PPSSEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred ccccccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 1112223344444444333321 1123445567888898888 888999999998865
No 494
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=26.18 E-value=2.6e+02 Score=23.54 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=29.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
.+...-+.+.|+.+|+.+++..|++-.++..++..+...
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~ 123 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSP 123 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcH
Confidence 344556779999999999999999999888888776653
No 495
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=26.06 E-value=1.1e+03 Score=27.38 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=12.2
Q ss_pred hhcCChHHHHHHHHhC
Q 035503 651 SRCGNLDEALRVILTM 666 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~ 666 (788)
...|++++|+..++..
T Consensus 718 y~~~~~e~aL~~le~l 733 (835)
T KOG2168|consen 718 YHNGEWEEALSILEHL 733 (835)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 4677888888887776
No 496
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=26.06 E-value=3.7e+02 Score=22.03 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHH
Q 035503 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 690 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 726 (788)
.+.+.+.++..+.|+.+..++.|+.-+...--|+++.
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAV 98 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHH
Confidence 4566778888888887555555554433333333333
No 497
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=25.97 E-value=1.2e+02 Score=29.82 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHH
Q 035503 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 691 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 726 (788)
|+..|.++..+.|++...|+.||.++...|+.-+|.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~av 36 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAV 36 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHH
Confidence 455666666666666666666666666666555554
No 498
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=25.70 E-value=5.8e+02 Score=25.41 Aligned_cols=142 Identities=13% Similarity=0.047 Sum_probs=70.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH----H-hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTC----V-KSNETELAEYISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~----~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
......+.-+...|.+.++.++.+. +...++.-+-+.+ . ...=+.++.+.++.+. .+|+.-......+.-
T Consensus 66 ~kia~ki~EiletG~l~ele~v~~d----e~~~~lklFtnifGvG~ktA~~Wy~~GfrTled~R-k~~~kft~qqk~Gl~ 140 (353)
T KOG2534|consen 66 PKIAEKIQEILETGVLRELEAVRND----ERSQSLKLFTNIFGVGLKTAEKWYREGFRTLEDVR-KKPDKFTRQQKAGLK 140 (353)
T ss_pred HHHHHHHHHHHHcCCchhHHHHhcc----hhHHHHHHHHHHhccCHHHHHHHHHhhhhHHHHHH-hCHHHHHHHHHHhHH
Confidence 3444566667777777776665531 1111111111111 1 1122355556666665 566654445555555
Q ss_pred HHh----CCCcHHHHHHHHHHHHCCCccCCceeEEEECC-eEEEEEcCCC----CCCChHH-HHHHHHHHHHHHHhcCCc
Q 035503 716 YAA----SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGE-ELHVFVACDR----SHPKTEE-IYATLALLGMHVRLVSKV 785 (788)
Q Consensus 716 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~-~~~~l~~~~~~~~~~~~~ 785 (788)
|+. .=-.+||..+.+.+.+.-..-.|+......++ ..-.-..||. .||.... -...+..+-....+.|++
T Consensus 141 yy~Df~~~v~ReE~~~i~~~V~~av~~~~p~~~vt~~GsfRRGk~~ggDvD~LithP~~~s~~~~~~~~l~~~le~~g~i 220 (353)
T KOG2534|consen 141 YYEDFLKRVTREEATAIQQTVQEAVWAFDPEAFVTVTGSFRRGKKMGGDVDFLITHPGSTSTEAKLLQLLMILLEKKGLL 220 (353)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHHHhhcCCCcEEEEeccccCCcccCCCeeEEEeCCCCCchhhhHHHHHHHHHHhcCeE
Confidence 443 12346888888877765444456554433321 1111123332 2555444 344555566677788887
Q ss_pred cC
Q 035503 786 FC 787 (788)
Q Consensus 786 ~~ 787 (788)
.+
T Consensus 221 l~ 222 (353)
T KOG2534|consen 221 LY 222 (353)
T ss_pred EE
Confidence 64
No 499
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=25.62 E-value=1.4e+02 Score=29.28 Aligned_cols=67 Identities=10% Similarity=-0.063 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH-HHHHHhCCCcHHHHHHHHHHHHC
Q 035503 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL-SNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
..|+..|...+.--.+.|-+.+--.++.++++..|.+.+.|..- ..-|...++.+.++.+|.+-+..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 35777888887777777888889999999999999999999874 44578889999998888765443
No 500
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.56 E-value=3.4e+02 Score=29.85 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=21.6
Q ss_pred HhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 035503 650 LSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISE 696 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 696 (788)
+..-|..+.|-++|+.+ ...|| ..+......+.+.|-...|..+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 52 LHDVNETERAYALYETLIAQNND-EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhhhhhhHhHHHHHHHHHHhCCc-chHHHHHHHHHhhhhhhHHHHHHH
Confidence 34445555555555555 23344 333334444445555555544444
Done!