Query 035503
Match_columns 788
No_of_seqs 664 out of 4518
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 05:06:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.7E-40 1.6E-44 368.6 41.1 503 126-718 63-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.4E-40 1.9E-44 368.1 34.7 500 227-737 63-581 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-27 5.7E-32 250.8 40.1 376 324-721 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-26 8E-31 242.1 40.7 355 373-736 5-369 (388)
5 4g26_A Pentatricopeptide repea 99.9 6.4E-26 2.2E-30 241.7 23.1 122 395-516 102-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 7.6E-26 2.6E-30 241.1 21.6 188 249-481 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 7.1E-24 2.4E-28 232.5 34.1 439 250-737 8-480 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 9.6E-23 3.3E-27 219.3 34.7 332 397-738 25-413 (450)
9 3fp2_A TPR repeat-containing p 99.9 5E-23 1.7E-27 227.1 30.4 356 248-631 25-405 (537)
10 2gw1_A Mitochondrial precursor 99.9 1.9E-22 6.4E-27 221.1 32.4 240 470-713 239-490 (514)
11 1xi4_A Clathrin heavy chain; a 99.9 1.8E-18 6.1E-23 194.0 63.7 364 322-727 989-1376(1630)
12 2y4t_A DNAJ homolog subfamily 99.9 2.3E-21 7.7E-26 208.5 34.9 352 365-725 24-444 (450)
13 3fp2_A TPR repeat-containing p 99.9 1.3E-21 4.6E-26 215.6 33.9 434 217-708 25-498 (537)
14 1xi4_A Clathrin heavy chain; a 99.9 5.6E-18 1.9E-22 190.1 60.9 349 324-730 1055-1440(1630)
15 3ieg_A DNAJ homolog subfamily 99.9 1.1E-19 3.8E-24 188.7 33.4 312 399-719 4-353 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 6.4E-19 2.2E-23 182.9 34.5 299 432-736 2-336 (359)
17 3hym_B Cell division cycle pro 99.9 3.6E-19 1.2E-23 182.4 29.9 289 431-723 20-322 (330)
18 3hym_B Cell division cycle pro 99.8 9.6E-19 3.3E-23 179.2 27.1 267 464-736 18-300 (330)
19 2xm6_A Protein corresponding t 99.8 2.9E-17 1E-21 177.8 39.2 378 317-732 38-464 (490)
20 2xm6_A Protein corresponding t 99.8 1.3E-16 4.3E-21 172.8 42.4 352 365-737 37-434 (490)
21 2ooe_A Cleavage stimulation fa 99.8 1E-16 3.5E-21 175.4 41.6 399 317-737 12-494 (530)
22 1fch_A Peroxisomal targeting s 99.8 1.2E-18 4E-23 181.7 21.6 281 446-732 38-356 (368)
23 4g1t_A Interferon-induced prot 99.8 2.7E-17 9.3E-22 177.8 31.7 363 367-746 51-470 (472)
24 1b89_A Protein (clathrin heavy 99.8 8.4E-18 2.9E-22 169.8 21.9 282 228-592 14-305 (449)
25 4eqf_A PEX5-related protein; a 99.8 1.5E-17 5.2E-22 173.0 20.8 257 471-731 68-352 (365)
26 1fch_A Peroxisomal targeting s 99.8 5.3E-17 1.8E-21 169.1 24.7 249 377-630 35-311 (368)
27 1b89_A Protein (clathrin heavy 99.8 1.7E-17 5.8E-22 167.6 19.4 287 329-666 14-308 (449)
28 3mkr_A Coatomer subunit epsilo 99.8 1E-16 3.6E-21 159.4 25.0 272 443-728 9-287 (291)
29 3cv0_A Peroxisome targeting si 99.8 2.5E-17 8.5E-22 168.4 19.6 275 435-733 23-313 (327)
30 4eqf_A PEX5-related protein; a 99.7 5.7E-17 1.9E-21 168.6 21.3 233 502-737 64-312 (365)
31 2ooe_A Cleavage stimulation fa 99.7 2.3E-14 7.8E-19 156.8 42.9 137 206-346 3-158 (530)
32 3mkr_A Coatomer subunit epsilo 99.7 1.5E-16 5.2E-21 158.2 22.1 248 475-737 6-266 (291)
33 4g1t_A Interferon-induced prot 99.7 1.1E-15 3.9E-20 165.0 30.7 398 248-713 51-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 1.3E-15 4.4E-20 155.6 25.3 228 398-631 21-267 (327)
35 2pl2_A Hypothetical conserved 99.7 6.4E-16 2.2E-20 146.8 18.2 193 536-732 3-211 (217)
36 3uq3_A Heat shock protein STI1 99.7 7.4E-15 2.5E-19 144.1 21.6 214 509-736 11-237 (258)
37 3e4b_A ALGK; tetratricopeptide 99.7 3.2E-15 1.1E-19 159.0 19.6 377 324-735 9-421 (452)
38 3u4t_A TPR repeat-containing p 99.6 7.6E-14 2.6E-18 138.1 26.4 257 436-721 6-270 (272)
39 3uq3_A Heat shock protein STI1 99.6 4.4E-15 1.5E-19 145.7 17.1 238 433-715 5-256 (258)
40 3e4b_A ALGK; tetratricopeptide 99.6 2.3E-14 8E-19 152.3 22.9 346 371-738 7-390 (452)
41 3spa_A Mtrpol, DNA-directed RN 99.6 4.8E-16 1.6E-20 169.4 9.6 118 399-516 128-249 (1134)
42 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-14 5.1E-19 143.5 19.9 241 480-729 17-269 (275)
43 2h6f_A Protein farnesyltransfe 99.6 2.4E-14 8.1E-19 147.1 19.4 244 469-719 98-366 (382)
44 3u4t_A TPR repeat-containing p 99.6 7.3E-14 2.5E-18 138.2 21.7 226 507-737 7-252 (272)
45 1ouv_A Conserved hypothetical 99.6 2.7E-13 9.3E-18 134.2 25.5 215 511-737 14-253 (273)
46 2pl2_A Hypothetical conserved 99.6 7.6E-14 2.6E-18 132.3 19.1 194 466-666 3-211 (217)
47 2ho1_A Type 4 fimbrial biogene 99.6 1.5E-13 5E-18 134.3 20.7 195 540-736 39-239 (252)
48 2h6f_A Protein farnesyltransfe 99.6 4.1E-14 1.4E-18 145.3 17.2 227 504-736 98-349 (382)
49 3spa_A Mtrpol, DNA-directed RN 99.6 6.9E-15 2.4E-19 160.4 11.8 145 368-517 128-286 (1134)
50 2q7f_A YRRB protein; TPR, prot 99.6 4.4E-14 1.5E-18 137.1 15.9 144 570-716 92-237 (243)
51 1ouv_A Conserved hypothetical 99.6 6.6E-13 2.3E-17 131.3 24.2 224 469-705 7-255 (273)
52 2q7f_A YRRB protein; TPR, prot 99.5 6.8E-14 2.3E-18 135.8 16.2 199 536-737 21-224 (243)
53 2vq2_A PILW, putative fimbrial 99.5 3.3E-13 1.1E-17 129.1 20.5 197 538-736 8-212 (225)
54 3sf4_A G-protein-signaling mod 99.5 1.1E-13 3.9E-18 145.9 18.8 296 430-726 6-367 (406)
55 3vtx_A MAMA; tetratricopeptide 99.5 2.7E-13 9.3E-18 125.0 18.7 166 568-737 4-172 (184)
56 4a1s_A PINS, partner of inscut 99.5 4.4E-14 1.5E-18 149.4 15.1 271 434-736 49-373 (411)
57 2ho1_A Type 4 fimbrial biogene 99.5 6.4E-13 2.2E-17 129.7 22.1 201 508-711 42-248 (252)
58 3ro2_A PINS homolog, G-protein 99.5 1.5E-13 5E-18 140.8 16.8 271 435-736 7-333 (338)
59 3sf4_A G-protein-signaling mod 99.5 5.4E-14 1.8E-18 148.4 13.6 292 397-689 8-364 (406)
60 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.5E-12 5E-17 129.0 22.4 240 378-627 16-269 (275)
61 2vq2_A PILW, putative fimbrial 99.5 1.7E-12 5.6E-17 124.1 21.7 203 506-712 11-222 (225)
62 4abn_A Tetratricopeptide repea 99.5 8.6E-14 2.9E-18 149.0 13.6 190 536-730 100-316 (474)
63 4e6h_A MRNA 3'-END-processing 99.5 1.7E-10 5.9E-15 126.4 36.7 424 263-706 47-575 (679)
64 4a1s_A PINS, partner of inscut 99.5 6.6E-13 2.3E-17 140.3 16.1 277 399-704 49-375 (411)
65 4gyw_A UDP-N-acetylglucosamine 99.5 9.6E-13 3.3E-17 146.2 17.6 162 569-734 9-173 (723)
66 4e6h_A MRNA 3'-END-processing 99.5 7.4E-10 2.5E-14 121.4 40.0 403 247-666 65-567 (679)
67 3ulq_A Response regulator aspa 99.4 4.5E-12 1.6E-16 132.3 21.6 236 474-735 109-368 (383)
68 3ulq_A Response regulator aspa 99.4 2.3E-12 7.9E-17 134.5 18.2 234 541-781 106-374 (383)
69 3ro2_A PINS homolog, G-protein 99.4 1.4E-12 4.9E-17 133.3 15.4 277 399-704 6-335 (338)
70 3vtx_A MAMA; tetratricopeptide 99.4 3.3E-12 1.1E-16 117.7 16.1 167 536-706 3-175 (184)
71 2ond_A Cleavage stimulation fa 99.4 2.8E-11 9.7E-16 121.7 23.3 218 485-707 33-276 (308)
72 2ond_A Cleavage stimulation fa 99.4 3.3E-11 1.1E-15 121.2 23.1 213 520-738 33-273 (308)
73 1hz4_A MALT regulatory protein 99.4 2.5E-10 8.7E-15 118.5 27.7 265 440-735 21-322 (373)
74 4i17_A Hypothetical protein; T 99.4 1.3E-11 4.5E-16 118.1 16.3 164 570-736 8-210 (228)
75 4abn_A Tetratricopeptide repea 99.4 7.6E-12 2.6E-16 133.8 15.8 180 554-737 84-289 (474)
76 3nf1_A KLC 1, kinesin light ch 99.3 9.5E-13 3.3E-17 133.0 8.3 237 468-735 27-307 (311)
77 4i17_A Hypothetical protein; T 99.3 2.7E-11 9.4E-16 115.9 17.5 206 501-717 5-225 (228)
78 3as5_A MAMA; tetratricopeptide 99.3 2.1E-11 7E-16 112.3 16.0 160 540-736 10-174 (186)
79 3q15_A PSP28, response regulat 99.3 4.8E-11 1.6E-15 124.2 19.9 221 513-734 111-364 (378)
80 3nf1_A KLC 1, kinesin light ch 99.3 2.8E-12 9.7E-17 129.5 8.0 242 432-704 26-310 (311)
81 3q15_A PSP28, response regulat 99.3 2.4E-10 8.1E-15 118.9 22.2 226 475-701 108-365 (378)
82 3as5_A MAMA; tetratricopeptide 99.3 1.9E-10 6.4E-15 105.8 18.7 169 503-707 8-179 (186)
83 1hz4_A MALT regulatory protein 99.3 3.6E-10 1.2E-14 117.4 21.6 299 401-736 17-350 (373)
84 3qky_A Outer membrane assembly 99.3 2.7E-10 9.3E-15 111.5 19.4 205 536-781 13-247 (261)
85 1qqe_A Vesicular transport pro 99.2 7.7E-11 2.6E-15 117.4 15.1 162 571-732 79-266 (292)
86 1qqe_A Vesicular transport pro 99.2 1.9E-10 6.5E-15 114.5 16.2 251 416-713 3-281 (292)
87 4gyw_A UDP-N-acetylglucosamine 99.2 7.3E-11 2.5E-15 131.1 12.7 163 538-704 9-177 (723)
88 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.2E-09 4E-14 104.1 18.3 182 537-738 3-216 (225)
89 3edt_B KLC 2, kinesin light ch 99.2 8.4E-11 2.9E-15 116.7 10.4 165 571-735 87-281 (283)
90 2pzi_A Probable serine/threoni 99.1 2E-10 6.8E-15 128.6 13.7 189 514-708 402-609 (681)
91 3qou_A Protein YBBN; thioredox 99.1 8.6E-10 2.9E-14 109.3 16.5 171 560-734 108-283 (287)
92 3qky_A Outer membrane assembly 99.1 7E-10 2.4E-14 108.6 15.7 205 500-725 12-251 (261)
93 4ga2_A E3 SUMO-protein ligase 99.1 3.2E-11 1.1E-15 106.3 5.4 139 578-721 6-149 (150)
94 2r5s_A Uncharacterized protein 99.1 8.2E-10 2.8E-14 100.5 12.3 158 573-734 10-172 (176)
95 3mv2_B Coatomer subunit epsilo 99.1 9.4E-09 3.2E-13 99.6 20.0 245 440-709 20-290 (310)
96 3mv2_B Coatomer subunit epsilo 99.1 2.7E-08 9.2E-13 96.4 23.1 175 557-736 85-283 (310)
97 4ga2_A E3 SUMO-protein ligase 99.1 2.6E-10 9.1E-15 100.4 8.4 124 610-736 3-130 (150)
98 3rjv_A Putative SEL1 repeat pr 99.1 6.1E-09 2.1E-13 97.8 17.7 162 567-737 16-199 (212)
99 3gyz_A Chaperone protein IPGC; 99.1 2.5E-10 8.4E-15 99.9 7.5 103 635-737 30-135 (151)
100 2fo7_A Synthetic consensus TPR 99.0 3.3E-09 1.1E-13 91.3 14.1 124 611-736 8-133 (136)
101 3urz_A Uncharacterized protein 99.0 2.6E-09 8.9E-14 100.1 14.0 128 573-704 58-189 (208)
102 3edt_B KLC 2, kinesin light ch 99.0 3E-09 1E-13 105.3 15.0 163 540-702 87-282 (283)
103 3urz_A Uncharacterized protein 99.0 2.4E-09 8.3E-14 100.3 12.2 159 573-737 8-188 (208)
104 2vsy_A XCC0866; transferase, g 99.0 3.7E-09 1.3E-13 116.4 15.5 159 551-713 2-169 (568)
105 2pzi_A Probable serine/threoni 99.0 9.1E-09 3.1E-13 115.2 18.4 182 479-667 402-603 (681)
106 2vgx_A Chaperone SYCD; alterna 99.0 1.9E-09 6.4E-14 94.5 9.6 103 635-737 15-120 (148)
107 4gco_A Protein STI-1; structur 99.0 2.5E-09 8.7E-14 90.6 10.1 101 636-736 8-111 (126)
108 2fo7_A Synthetic consensus TPR 99.0 1.3E-08 4.5E-13 87.5 14.9 132 571-705 3-136 (136)
109 2vsy_A XCC0866; transferase, g 98.9 1.4E-08 4.9E-13 111.7 17.9 145 517-666 3-154 (568)
110 2ifu_A Gamma-SNAP; membrane fu 98.9 1.3E-08 4.3E-13 102.1 15.8 219 481-727 4-253 (307)
111 3dra_A Protein farnesyltransfe 98.9 1.2E-07 4.1E-12 93.1 20.7 226 482-713 47-300 (306)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.8E-08 9.6E-13 93.6 15.8 129 571-705 8-154 (213)
113 2xcb_A PCRH, regulatory protei 98.9 9.7E-09 3.3E-13 89.4 11.5 102 635-736 12-116 (142)
114 3dra_A Protein farnesyltransfe 98.9 4.8E-07 1.6E-11 88.8 24.0 212 519-734 49-286 (306)
115 4gco_A Protein STI-1; structur 98.9 1.5E-08 5.1E-13 85.8 11.4 109 605-716 14-125 (126)
116 2yhc_A BAMD, UPF0169 lipoprote 98.8 5.5E-08 1.9E-12 92.3 15.7 186 502-708 3-220 (225)
117 3qou_A Protein YBBN; thioredox 98.8 6.8E-08 2.3E-12 95.5 16.9 161 500-665 114-280 (287)
118 3u3w_A Transcriptional activat 98.8 2.7E-07 9.2E-12 91.7 21.1 161 574-734 80-265 (293)
119 2qfc_A PLCR protein; TPR, HTH, 98.8 1.1E-07 3.7E-12 94.6 17.6 163 572-734 78-265 (293)
120 2r5s_A Uncharacterized protein 98.8 4.6E-08 1.6E-12 88.7 13.0 156 540-700 8-172 (176)
121 2ifu_A Gamma-SNAP; membrane fu 98.8 3.9E-08 1.3E-12 98.5 13.6 197 515-733 3-222 (307)
122 2uy1_A Cleavage stimulation fa 98.8 3.9E-06 1.3E-10 89.3 28.9 201 384-597 196-412 (493)
123 3rjv_A Putative SEL1 repeat pr 98.8 1.5E-07 5.2E-12 88.2 16.0 173 522-704 5-200 (212)
124 4f3v_A ESX-1 secretion system 98.8 3E-08 1E-12 94.7 10.9 194 515-714 18-249 (282)
125 2c2l_A CHIP, carboxy terminus 98.8 1E-08 3.5E-13 101.1 7.6 190 539-735 5-199 (281)
126 2uy1_A Cleavage stimulation fa 98.8 3.4E-06 1.2E-10 89.8 27.5 203 485-700 196-412 (493)
127 2e2e_A Formate-dependent nitri 98.8 4.6E-08 1.6E-12 88.9 11.4 122 614-737 20-146 (177)
128 1p5q_A FKBP52, FK506-binding p 98.8 2.6E-08 9E-13 100.9 10.6 94 641-734 197-293 (336)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.2E-07 1.1E-11 86.2 17.5 152 540-703 8-174 (213)
130 4f3v_A ESX-1 secretion system 98.7 6.5E-08 2.2E-12 92.5 12.5 183 550-737 18-239 (282)
131 1a17_A Serine/threonine protei 98.7 1.1E-07 3.7E-12 85.2 12.7 126 607-734 16-145 (166)
132 2lni_A Stress-induced-phosphop 98.7 1.2E-07 4E-12 81.2 11.6 114 605-721 17-133 (133)
133 1hxi_A PEX5, peroxisome target 98.7 4E-08 1.4E-12 82.5 8.2 97 641-737 18-116 (121)
134 3upv_A Heat shock protein STI1 98.7 1.1E-07 3.6E-12 80.7 10.9 96 641-736 5-102 (126)
135 3u3w_A Transcriptional activat 98.7 2.2E-06 7.4E-11 85.1 22.2 158 544-701 81-266 (293)
136 2vyi_A SGTA protein; chaperone 98.7 1.3E-07 4.5E-12 80.5 11.4 117 605-723 13-131 (131)
137 2hr2_A Hypothetical protein; a 98.7 1.1E-07 3.8E-12 81.7 10.0 65 673-737 58-133 (159)
138 1na0_A Designed protein CTPR3; 98.7 2.3E-07 8E-12 78.2 12.2 114 605-720 10-125 (125)
139 2kck_A TPR repeat; tetratricop 98.7 1.5E-07 5E-12 77.7 10.6 99 640-738 6-109 (112)
140 4gcn_A Protein STI-1; structur 98.6 1.1E-07 3.7E-12 80.6 9.1 94 642-735 10-112 (127)
141 2qfc_A PLCR protein; TPR, HTH, 98.6 6.4E-07 2.2E-11 89.0 15.8 161 541-701 78-266 (293)
142 3gw4_A Uncharacterized protein 98.6 3.7E-07 1.3E-11 84.9 13.1 156 550-734 4-175 (203)
143 3q49_B STIP1 homology and U bo 98.6 3E-07 1E-11 79.2 11.4 99 639-737 8-108 (137)
144 3sz7_A HSC70 cochaperone (SGT) 98.6 2E-07 6.7E-12 83.4 10.5 109 603-714 10-121 (164)
145 2vgx_A Chaperone SYCD; alterna 98.6 1.2E-07 4.1E-12 82.8 8.2 104 605-711 22-128 (148)
146 3gyz_A Chaperone protein IPGC; 98.6 1.8E-07 6.3E-12 81.5 9.2 98 606-706 38-138 (151)
147 2fbn_A 70 kDa peptidylprolyl i 98.6 3E-07 1E-11 85.2 11.1 171 545-736 11-187 (198)
148 3q7a_A Farnesyltransferase alp 98.6 1.9E-05 6.6E-10 78.1 24.0 226 481-713 67-344 (349)
149 1elw_A TPR1-domain of HOP; HOP 98.5 4.4E-07 1.5E-11 75.5 10.8 95 642-736 6-102 (118)
150 2e2e_A Formate-dependent nitri 98.5 4.7E-07 1.6E-11 82.1 11.0 128 580-710 21-153 (177)
151 2lni_A Stress-induced-phosphop 98.5 5E-07 1.7E-11 77.2 10.6 97 640-736 16-114 (133)
152 2dba_A Smooth muscle cell asso 98.5 1.3E-06 4.3E-11 76.3 13.0 111 605-718 29-145 (148)
153 2dba_A Smooth muscle cell asso 98.5 8.2E-07 2.8E-11 77.5 11.5 98 639-736 27-129 (148)
154 1elw_A TPR1-domain of HOP; HOP 98.5 1.2E-06 4E-11 72.8 11.9 109 606-716 6-116 (118)
155 3q7a_A Farnesyltransferase alp 98.5 5.4E-06 1.8E-10 82.1 18.3 215 517-735 68-331 (349)
156 2c2l_A CHIP, carboxy terminus 98.5 8.5E-07 2.9E-11 87.2 12.6 189 503-701 4-199 (281)
157 3rkv_A Putative peptidylprolyl 98.5 7.1E-07 2.4E-11 79.5 10.9 65 672-736 63-127 (162)
158 1na0_A Designed protein CTPR3; 98.5 9.2E-07 3.1E-11 74.4 10.9 97 640-736 9-107 (125)
159 3dss_A Geranylgeranyl transfer 98.5 2.1E-05 7.1E-10 77.6 21.9 190 519-714 90-317 (331)
160 3upv_A Heat shock protein STI1 98.5 7.8E-07 2.7E-11 75.2 10.4 110 606-718 6-124 (126)
161 2xev_A YBGF; tetratricopeptide 98.5 4.8E-07 1.6E-11 76.9 9.0 93 644-736 6-106 (129)
162 3sz7_A HSC70 cochaperone (SGT) 98.5 1E-06 3.5E-11 78.7 11.5 95 641-735 12-108 (164)
163 3dss_A Geranylgeranyl transfer 98.5 1.5E-05 5E-10 78.7 20.3 180 554-736 90-305 (331)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 9.1E-07 3.1E-11 93.8 12.5 144 570-735 269-415 (457)
165 2xcb_A PCRH, regulatory protei 98.4 7.2E-07 2.4E-11 77.4 9.4 105 607-714 21-128 (142)
166 3gw4_A Uncharacterized protein 98.4 2.5E-06 8.7E-11 79.1 13.8 95 538-632 26-135 (203)
167 2vyi_A SGTA protein; chaperone 98.4 1.4E-06 4.7E-11 74.0 10.9 97 640-736 12-110 (131)
168 1a17_A Serine/threonine protei 98.4 3.5E-06 1.2E-10 75.1 13.5 127 571-700 15-145 (166)
169 4b4t_Q 26S proteasome regulato 98.4 2.4E-06 8.1E-11 90.4 14.4 163 572-734 58-244 (434)
170 2if4_A ATFKBP42; FKBP-like, al 98.4 3.9E-07 1.3E-11 92.3 7.7 149 570-738 180-331 (338)
171 3k9i_A BH0479 protein; putativ 98.4 1.9E-07 6.4E-12 77.9 4.3 84 653-736 3-91 (117)
172 4gcn_A Protein STI-1; structur 98.4 1.7E-06 5.9E-11 73.1 10.3 105 571-704 10-115 (127)
173 2hr2_A Hypothetical protein; a 98.3 5.6E-07 1.9E-11 77.3 6.1 73 642-714 59-144 (159)
174 3q49_B STIP1 homology and U bo 98.3 2.1E-06 7.3E-11 73.7 9.8 112 603-717 8-127 (137)
175 1elr_A TPR2A-domain of HOP; HO 98.3 1.4E-06 4.9E-11 73.9 8.5 94 642-735 6-108 (131)
176 1wao_1 Serine/threonine protei 98.3 1.1E-06 3.9E-11 93.4 9.1 117 612-731 14-135 (477)
177 1wao_1 Serine/threonine protei 98.3 5.9E-06 2E-10 87.8 14.2 115 578-696 15-134 (477)
178 3ro3_A PINS homolog, G-protein 98.3 1.7E-06 6E-11 76.7 8.6 63 673-735 90-158 (164)
179 2xev_A YBGF; tetratricopeptide 98.3 4.1E-06 1.4E-10 71.0 10.1 105 610-717 8-121 (129)
180 1ihg_A Cyclophilin 40; ppiase 98.3 2.3E-06 7.9E-11 87.5 9.7 137 570-728 224-363 (370)
181 1dce_A Protein (RAB geranylger 98.2 3.5E-05 1.2E-09 83.4 19.0 136 585-724 89-244 (567)
182 1hxi_A PEX5, peroxisome target 98.2 3.6E-06 1.2E-10 70.3 8.9 96 608-706 21-119 (121)
183 3rkv_A Putative peptidylprolyl 98.2 1.6E-06 5.5E-11 77.2 7.1 80 640-719 63-145 (162)
184 1p5q_A FKBP52, FK506-binding p 98.2 7.5E-06 2.6E-10 82.8 12.8 127 571-700 149-293 (336)
185 1elr_A TPR2A-domain of HOP; HO 98.2 6.8E-06 2.3E-10 69.6 10.6 47 672-719 79-125 (131)
186 2fbn_A 70 kDa peptidylprolyl i 98.2 5.5E-06 1.9E-10 76.6 10.7 94 643-736 41-152 (198)
187 2kck_A TPR repeat; tetratricop 98.2 7.7E-06 2.7E-10 67.0 10.2 99 606-706 8-111 (112)
188 3ma5_A Tetratricopeptide repea 98.2 6.5E-06 2.2E-10 66.0 8.9 67 670-736 5-71 (100)
189 3k9i_A BH0479 protein; putativ 98.2 1.4E-06 4.7E-11 72.5 5.0 99 617-715 3-104 (117)
190 1zu2_A Mitochondrial import re 98.2 1.3E-06 4.6E-11 74.8 4.5 85 653-737 15-122 (158)
191 3n71_A Histone lysine methyltr 98.2 8E-06 2.7E-10 86.0 11.4 125 614-738 319-467 (490)
192 4b4t_Q 26S proteasome regulato 98.1 3.3E-05 1.1E-09 81.5 16.3 23 475-497 11-33 (434)
193 3ro3_A PINS homolog, G-protein 98.1 6.6E-06 2.3E-10 72.8 9.1 133 572-704 12-161 (164)
194 2l6j_A TPR repeat-containing p 98.1 3.7E-06 1.3E-10 68.9 6.3 91 640-730 4-102 (111)
195 2kat_A Uncharacterized protein 98.1 8.3E-06 2.9E-10 67.4 7.5 79 658-736 3-83 (115)
196 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.4E-05 8.4E-10 82.7 12.6 66 672-737 317-382 (457)
197 1na3_A Designed protein CTPR2; 98.0 1.7E-05 5.8E-10 62.1 8.4 80 641-720 10-91 (91)
198 1ihg_A Cyclophilin 40; ppiase 98.0 2.3E-05 7.9E-10 80.1 11.3 65 672-736 273-337 (370)
199 2if4_A ATFKBP42; FKBP-like, al 98.0 9.8E-06 3.4E-10 81.9 8.1 152 538-707 179-334 (338)
200 3bee_A Putative YFRE protein; 98.0 2.6E-05 8.9E-10 60.9 8.6 70 669-738 3-75 (93)
201 1klx_A Cysteine rich protein B 97.9 6.8E-05 2.3E-09 64.1 11.0 111 619-737 10-128 (138)
202 2l6j_A TPR repeat-containing p 97.9 3.1E-05 1E-09 63.3 8.3 67 671-737 3-69 (111)
203 1dce_A Protein (RAB geranylger 97.8 0.0002 6.7E-09 77.5 15.3 154 580-737 39-223 (567)
204 3n71_A Histone lysine methyltr 97.8 2.8E-05 9.4E-10 81.9 7.6 116 648-781 317-450 (490)
205 3lvg_A Clathrin heavy chain 1; 97.8 7.2E-07 2.5E-11 88.8 -4.1 199 115-331 53-276 (624)
206 1zu2_A Mitochondrial import re 97.8 2.1E-05 7E-10 67.4 4.8 104 581-709 14-128 (158)
207 1na3_A Designed protein CTPR2; 97.8 7.5E-05 2.6E-09 58.2 7.8 65 672-736 9-73 (91)
208 1klx_A Cysteine rich protein B 97.8 0.00022 7.5E-09 60.9 11.2 111 583-702 9-127 (138)
209 3qwp_A SET and MYND domain-con 97.6 6.9E-05 2.3E-09 77.8 7.5 113 650-780 297-427 (429)
210 3qww_A SET and MYND domain-con 97.6 3.7E-05 1.3E-09 79.5 5.1 83 673-773 341-431 (433)
211 1pc2_A Mitochondria fission pr 97.6 0.00032 1.1E-08 59.3 9.7 67 670-736 30-101 (152)
212 2kat_A Uncharacterized protein 97.5 0.0002 6.8E-09 58.9 7.7 81 622-705 3-86 (115)
213 2kc7_A BFR218_protein; tetratr 97.5 0.00021 7.3E-09 56.7 6.9 64 646-709 6-72 (99)
214 2kc7_A BFR218_protein; tetratr 97.3 0.00089 3E-08 53.0 8.8 56 680-735 8-64 (99)
215 3qww_A SET and MYND domain-con 97.3 0.00087 3E-08 69.3 10.6 94 617-710 311-425 (433)
216 3ma5_A Tetratricopeptide repea 97.3 0.00074 2.5E-08 53.7 7.9 62 569-631 7-68 (100)
217 3ly7_A Transcriptional activat 97.3 0.0052 1.8E-07 60.7 15.1 65 640-704 277-342 (372)
218 3ly7_A Transcriptional activat 97.3 0.0025 8.4E-08 63.0 12.6 69 669-738 274-342 (372)
219 3lvg_A Clathrin heavy chain 1; 97.2 0.00018 6.3E-09 72.0 4.3 390 46-490 56-534 (624)
220 3qwp_A SET and MYND domain-con 97.2 0.0019 6.5E-08 66.9 12.0 98 614-711 297-415 (429)
221 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0025 8.7E-08 50.9 8.8 72 642-713 7-87 (104)
222 3u64_A Protein TP_0956; tetrat 97.0 0.0018 6.1E-08 61.1 8.6 87 656-742 179-276 (301)
223 1nzn_A CGI-135 protein, fissio 96.7 0.0087 3E-07 48.5 8.9 67 670-736 33-104 (126)
224 3mkq_A Coatomer beta'-subunit; 96.7 0.066 2.3E-06 61.3 20.1 166 376-594 608-774 (814)
225 1qsa_A Protein (soluble lytic 96.6 0.87 3E-05 49.1 26.5 113 584-700 229-347 (618)
226 3mkq_A Coatomer beta'-subunit; 96.6 0.042 1.5E-06 62.9 17.7 43 550-594 664-706 (814)
227 1wy6_A Hypothetical protein ST 96.6 0.087 3E-06 42.5 13.4 140 580-738 18-157 (172)
228 1pc2_A Mitochondria fission pr 96.5 0.0064 2.2E-07 51.4 7.4 88 620-709 14-108 (152)
229 1y8m_A FIS1; mitochondria, unk 96.5 0.06 2E-06 44.4 12.5 68 669-736 36-107 (144)
230 2v5f_A Prolyl 4-hydroxylase su 96.2 0.014 4.7E-07 46.5 7.6 65 672-736 5-76 (104)
231 3bee_A Putative YFRE protein; 96.2 0.031 1.1E-06 43.2 9.3 69 638-706 4-77 (93)
232 3o48_A Mitochondria fission 1 95.9 0.037 1.3E-06 44.9 8.2 68 669-736 37-108 (134)
233 4ady_A RPN2, 26S proteasome re 95.9 3.2 0.00011 46.6 32.8 260 326-606 382-663 (963)
234 4gns_B Protein CSD3, chitin bi 95.4 0.16 5.6E-06 55.6 14.2 58 675-732 340-397 (754)
235 3u64_A Protein TP_0956; tetrat 95.2 0.018 6.2E-07 54.3 4.9 64 641-704 200-272 (301)
236 3mkq_B Coatomer subunit alpha; 95.2 1.4 4.8E-05 38.2 17.4 101 442-563 14-114 (177)
237 1nzn_A CGI-135 protein, fissio 95.2 0.18 6.1E-06 40.9 10.0 90 620-711 17-113 (126)
238 4h7y_A Dual specificity protei 94.3 0.18 6.3E-06 41.8 8.1 101 602-704 11-126 (161)
239 4ady_A RPN2, 26S proteasome re 94.0 9.8 0.00033 42.8 37.5 268 407-681 383-670 (963)
240 3mkq_B Coatomer subunit alpha; 93.8 3 0.0001 36.1 17.7 43 550-594 17-59 (177)
241 2wpv_A GET4, UPF0363 protein Y 93.5 5.7 0.0002 38.2 21.6 165 438-632 38-216 (312)
242 3ffl_A Anaphase-promoting comp 92.7 0.7 2.4E-05 39.3 9.3 29 640-668 122-150 (167)
243 4h7y_A Dual specificity protei 92.4 0.97 3.3E-05 37.6 9.4 102 395-498 10-124 (161)
244 3lpz_A GET4 (YOR164C homolog); 91.9 9.7 0.00033 36.9 21.6 134 219-363 37-181 (336)
245 4gns_B Protein CSD3, chitin bi 91.7 0.88 3E-05 50.0 11.2 54 511-565 345-398 (754)
246 2wpv_A GET4, UPF0363 protein Y 91.1 11 0.00039 36.2 18.7 133 219-362 35-178 (312)
247 3txn_A 26S proteasome regulato 91.0 5.8 0.0002 39.8 15.5 160 540-700 21-209 (394)
248 1y8m_A FIS1; mitochondria, unk 90.4 4 0.00014 33.7 11.1 73 637-709 36-114 (144)
249 3ffl_A Anaphase-promoting comp 90.1 1.7 5.7E-05 37.0 8.9 126 428-566 13-150 (167)
250 2ff4_A Probable regulatory pro 89.8 0.75 2.5E-05 46.7 8.1 61 674-734 173-233 (388)
251 3o48_A Mitochondria fission 1 89.5 1.9 6.5E-05 35.1 8.4 74 637-710 37-116 (134)
252 4b4t_P 26S proteasome regulato 89.2 22 0.00075 36.6 24.1 167 402-568 141-325 (445)
253 4b4t_P 26S proteasome regulato 88.3 25 0.00085 36.1 19.9 94 573-666 141-244 (445)
254 3lpz_A GET4 (YOR164C homolog); 87.3 22 0.00076 34.4 25.2 83 534-631 132-214 (336)
255 4fhn_B Nucleoporin NUP120; pro 86.7 12 0.00041 44.2 16.7 134 184-340 901-1042(1139)
256 2qx5_A Nucleoporin NIC96; mRNA 84.2 50 0.0017 35.7 18.5 38 223-260 158-198 (661)
257 2ff4_A Probable regulatory pro 83.9 5.1 0.00018 40.5 10.4 72 572-644 174-249 (388)
258 1wy6_A Hypothetical protein ST 83.4 17 0.00058 29.6 16.3 65 399-464 92-156 (172)
259 4fhn_B Nucleoporin NUP120; pro 82.6 15 0.00053 43.2 15.1 21 675-695 941-961 (1139)
260 2uwj_G Type III export protein 81.7 13 0.00045 28.1 8.7 85 518-607 21-105 (115)
261 2p58_C Putative type III secre 81.3 14 0.00047 28.1 8.7 85 518-607 22-106 (116)
262 1zbp_A Hypothetical protein VP 81.1 12 0.00041 34.8 10.5 123 578-707 6-135 (273)
263 2p58_C Putative type III secre 80.7 14 0.00047 28.1 8.6 87 195-286 20-106 (116)
264 1zbp_A Hypothetical protein VP 80.7 2.6 9E-05 39.2 6.0 58 648-705 5-64 (273)
265 2uwj_G Type III export protein 80.6 13 0.00045 28.1 8.4 87 195-286 19-105 (115)
266 1v54_E Cytochrome C oxidase po 79.8 18 0.00062 27.6 9.2 48 486-533 28-75 (109)
267 1v54_E Cytochrome C oxidase po 79.2 10 0.00034 29.0 7.5 62 263-325 25-86 (109)
268 4b4t_R RPN7, 26S proteasome re 78.1 10 0.00035 38.9 10.3 94 640-733 131-235 (429)
269 2y69_E Cytochrome C oxidase su 70.1 39 0.0013 27.4 9.2 59 486-545 71-129 (152)
270 4b4t_R RPN7, 26S proteasome re 68.0 21 0.00073 36.5 9.8 97 538-634 131-238 (429)
271 2y69_E Cytochrome C oxidase su 66.3 26 0.00091 28.4 7.5 61 264-325 69-129 (152)
272 3txn_A 26S proteasome regulato 65.9 1.1E+02 0.0038 30.5 21.0 291 433-737 19-345 (394)
273 1qsa_A Protein (soluble lytic 64.7 1.5E+02 0.0053 31.7 39.3 396 54-493 16-438 (618)
274 3esl_A Checkpoint serine/threo 64.6 54 0.0019 28.9 10.0 50 688-737 95-146 (202)
275 3twe_A Alpha4H; unknown functi 63.0 3.1 0.00011 21.3 1.1 21 765-785 3-23 (27)
276 1ya0_A SMG-7 transcript varian 54.7 34 0.0012 35.6 8.3 56 677-732 157-212 (497)
277 3esl_A Checkpoint serine/threo 51.8 1.3E+02 0.0043 26.6 11.1 55 412-466 93-148 (202)
278 1wdy_A 2-5A-dependent ribonucl 51.5 97 0.0033 28.8 10.9 18 225-242 153-170 (285)
279 3kae_A CDC27, possible protein 50.1 1.2E+02 0.0041 25.8 9.9 84 648-734 41-142 (242)
280 3bqo_A Telomeric repeat-bindin 49.8 81 0.0028 27.5 8.3 72 656-727 94-172 (211)
281 3mv2_A Coatomer subunit alpha; 49.8 1.3E+02 0.0043 28.9 10.6 61 661-735 194-256 (325)
282 4a1g_A Mitotic checkpoint seri 48.3 1.2E+02 0.0041 25.3 9.3 48 691-738 84-133 (152)
283 3kae_A CDC27, possible protein 47.3 1.3E+02 0.0045 25.5 15.7 83 546-630 41-140 (242)
284 4gq2_M Nucleoporin NUP120; bet 46.1 1.5E+02 0.005 34.1 12.7 129 575-720 816-950 (950)
285 3jxi_A Vanilloid receptor-rela 44.0 1.2E+02 0.0042 27.7 10.1 94 51-144 9-118 (260)
286 2wvi_A Mitotic checkpoint seri 42.5 1.5E+02 0.0052 25.1 9.0 48 691-738 79-128 (164)
287 4b4t_S RPN3, 26S proteasome re 41.3 41 0.0014 34.8 6.3 67 640-706 231-304 (523)
288 4b4t_S RPN3, 26S proteasome re 41.0 59 0.002 33.7 7.4 63 604-666 231-296 (523)
289 3jxi_A Vanilloid receptor-rela 38.1 1.2E+02 0.0042 27.7 9.0 89 155-244 10-117 (260)
290 1bpo_A Protein (clathrin); cla 37.3 3.1E+02 0.01 27.9 11.5 132 528-669 351-485 (494)
291 1ug3_A EIF4GI, eukaryotic prot 37.2 2.5E+02 0.0087 27.2 11.3 61 220-280 14-78 (339)
292 1k1a_A B-cell lymphoma 3-encod 36.9 2.3E+02 0.0078 25.3 12.5 29 50-78 12-40 (241)
293 3kea_A K1L; tropism, ANK repea 36.1 2.2E+02 0.0075 26.6 10.6 21 223-243 132-152 (285)
294 2d2s_A Exocyst complex compone 36.0 1.2E+02 0.0042 27.6 8.1 87 255-344 25-117 (235)
295 2nsz_A Programmed cell death p 35.8 1E+02 0.0036 24.8 6.8 64 221-284 11-79 (129)
296 3eu9_A Huntingtin-interacting 34.3 1.3E+02 0.0044 26.9 8.4 20 122-141 79-98 (240)
297 1wdy_A 2-5A-dependent ribonucl 34.0 2.8E+02 0.0095 25.4 14.3 113 224-342 109-240 (285)
298 3kea_A K1L; tropism, ANK repea 33.7 1.7E+02 0.0057 27.4 9.3 58 224-285 165-225 (285)
299 4g3b_A Alpha4F3D; alpha helix, 32.4 19 0.00065 18.3 1.1 23 765-787 3-25 (26)
300 2qx5_A Nucleoporin NIC96; mRNA 32.4 5.1E+02 0.017 27.9 31.7 41 370-410 155-198 (661)
301 3ltj_A Alpharep-4; protein eng 32.4 2.5E+02 0.0084 24.3 18.8 175 364-554 25-199 (201)
302 2zu6_B Programmed cell death p 31.6 2.3E+02 0.0079 27.0 9.5 62 370-431 169-235 (307)
303 3ltm_A Alpha-REP4; protein eng 31.4 2.6E+02 0.009 24.3 18.8 175 332-518 16-203 (211)
304 2d2s_A Exocyst complex compone 31.2 2E+02 0.0068 26.2 8.6 89 404-495 24-118 (235)
305 4a1g_A Mitotic checkpoint seri 29.6 2.5E+02 0.0084 23.4 9.7 50 452-501 84-134 (152)
306 3eu9_A Huntingtin-interacting 29.5 2.3E+02 0.0077 25.2 9.2 20 325-344 214-233 (240)
307 3ygs_P Procaspase 9; apoptosis 28.9 1E+02 0.0035 23.3 5.3 38 552-589 51-88 (97)
308 2ion_A PDCD4, programmed cell 28.3 95 0.0033 26.0 5.5 64 221-284 13-81 (152)
309 2b7e_A PRE-mRNA processing pro 28.2 48 0.0016 22.4 2.8 35 60-94 2-37 (59)
310 2zu6_B Programmed cell death p 27.6 1.7E+02 0.0059 27.9 7.9 69 250-319 168-238 (307)
311 2r9g_A AAA ATPase, central reg 27.5 2.7E+02 0.0094 24.4 8.2 55 479-534 25-84 (204)
312 3i5p_A Nucleoporin NUP170; hel 25.0 6E+02 0.021 26.4 12.4 69 668-736 174-247 (525)
313 2wvi_A Mitotic checkpoint seri 24.2 3.3E+02 0.011 23.1 10.4 46 417-462 79-125 (164)
314 3pvs_A Replication-associated 23.6 5.9E+02 0.02 25.8 12.5 40 479-518 266-305 (447)
315 2ion_A PDCD4, programmed cell 23.1 2.7E+02 0.0092 23.2 7.4 22 438-459 14-35 (152)
316 3b7b_A Euchromatic histone-lys 23.1 3.9E+02 0.013 23.6 10.0 215 48-277 12-236 (237)
317 2p1h_A APAF-1, apoptotic prote 22.5 2.4E+02 0.0082 20.9 6.9 36 551-586 49-84 (94)
318 3aji_A 26S proteasome non-ATPa 22.5 3.9E+02 0.013 23.4 10.8 21 50-70 9-29 (231)
319 1oyz_A Hypothetical protein YI 22.2 4.6E+02 0.016 24.1 22.3 18 395-412 65-82 (280)
320 3qye_A TBC1 domain family memb 22.0 4.5E+02 0.015 25.2 10.1 42 99-142 208-249 (331)
321 3bge_A Predicted ATPase; struc 21.4 3.5E+02 0.012 23.7 7.7 40 479-518 18-57 (201)
322 1k1a_A B-cell lymphoma 3-encod 21.3 4.3E+02 0.015 23.3 12.0 180 90-282 17-210 (241)
323 3hra_A Ankyrin repeat family p 21.0 3.9E+02 0.013 22.8 8.9 184 154-342 9-199 (201)
324 2nsz_A Programmed cell death p 20.2 3.4E+02 0.012 21.7 8.2 62 541-602 10-76 (129)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-40 Score=368.57 Aligned_cols=503 Identities=8% Similarity=-0.094 Sum_probs=337.0
Q ss_pred HhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHH
Q 035503 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205 (788)
Q Consensus 126 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 205 (788)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.+ ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34567777788888888888999999999999999999999999999985 4578889999999999999999999999
Q ss_pred HHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCC-------------------CcchHHHHHHHHHHCCChhH
Q 035503 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-------------------NVVAWNSMIVGYVQNGLNEE 266 (788)
Q Consensus 206 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 266 (788)
+.+... +++..+++.++.+|.+.|++++|.++|+++... ++.+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987643 678899999999999999999999999965433 36789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHH--H-HHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHh
Q 035503 267 AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ--A-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343 (788)
Q Consensus 267 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 343 (788)
|+++|++|.+.+ +.+...+..+...+...+..+.+.. + +..+...+......+|+.++..|.+.
T Consensus 219 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 285 (597)
T 2xpi_A 219 AKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE------------ 285 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH------------
T ss_pred HHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc------------
Confidence 999999998764 2234444444443333322211111 0 22222222222233333334444444
Q ss_pred cCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc--CChhHHHHHHHHHHHcCChhHHHHHH
Q 035503 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL--RDVVLWNTLLAAYADLGRSGEASRLF 421 (788)
Q Consensus 344 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~ 421 (788)
|++++|.++|+++.. ++..+|+.++..+.+.|++++|+++|
T Consensus 286 -------------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 286 -------------------------------------DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp -------------------------------------HHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------------chHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 444444444444433 46677777777777777888888888
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC
Q 035503 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501 (788)
Q Consensus 422 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (788)
+++...+ +.+..++..++.+|.+.|++++|..+|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.. +.
T Consensus 329 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 405 (597)
T 2xpi_A 329 TKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQ 405 (597)
T ss_dssp HHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC
Confidence 7777664 335667777777777777777777777777543 23456677777777777777777777777776531 22
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 035503 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581 (788)
Q Consensus 502 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 581 (788)
+..++..++.++...|++++|..+++.+.+.++ .+..+|+.++.+|.+
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ--------------------------------GTHLPYLFLGMQHMQ 453 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT--------------------------------TCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------------------------cchHHHHHHHHHHHH
Confidence 344555555555555555555555555444433 244556666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc---CCCCC--cchHHHHHHHHhhcCCh
Q 035503 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH---QVKPS--MEHFGCVVNLLSRCGNL 656 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~ 656 (788)
.|++++|+++|+++.+.. +.+..+|..++..|.+.|++++|+++|+++.+.. +..|+ ..++..++.+|.+.|++
T Consensus 454 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 666666666666666543 3356666666667777777777777776665432 44565 56777777777777888
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 657 DEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 657 ~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
++|.++++++ . .+.+..+|..++.+|...|++++|+..++++++++|+++.++..|+.+|..
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 8887777776 2 234678899999999999999999999999999999999999999988754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.4e-40 Score=368.07 Aligned_cols=500 Identities=9% Similarity=-0.031 Sum_probs=400.8
Q ss_pred hHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHH
Q 035503 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306 (788)
Q Consensus 227 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 306 (788)
+.+.|.+..+...+..++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677788888889888888999999999999999999999999999985 4678899999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHH-HHHHHHcCCCchhHHHHHHHHHhhcCChHH
Q 035503 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL-IASYVQSGQSDVVVASSIVDMYAKCERIDN 385 (788)
Q Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (788)
+.+... +++..+++.++.+|.+.|++++|+++|+++...+....... +..+......+..++..++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 67888999999999999999999999996543321000000 000000002345678888999999999999
Q ss_pred HHHHHHhcccC---ChhHHHHHHHHHHHcCChhHH--HHH-HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 386 AKQVFNSIILR---DVVLWNTLLAAYADLGRSGEA--SRL-FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 386 A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a--~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
|.+.|+++... +...+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|..+|+++
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 99999988643 334455554443332222221 111 444544444555667777888999999999999999999
Q ss_pred hhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChh
Q 035503 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539 (788)
Q Consensus 460 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 539 (788)
.+. +++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+..+ .+..
T Consensus 299 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 374 (597)
T 2xpi_A 299 NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAV 374 (597)
T ss_dssp TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHH
T ss_pred hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHH
Confidence 765 5799999999999999999999999999999864 44677899999999999999999999999998876 7888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 616 (788)
++..++.+|.+.|++++|.++|+.+. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999764 3567899999999999999999999999999864 4578899999999999
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCC
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-------PCDPD--AHIIGSLLSTCVKSNE 687 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~ 687 (788)
.|++++|+++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999754 2345788999999999999999999999988 34677 6899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 688 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+++|+..++++++.+|+++.+|..++.+|.+.|++++|.++++++.+..+
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999988653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.7e-27 Score=250.81 Aligned_cols=376 Identities=14% Similarity=0.103 Sum_probs=305.0
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCChhH
Q 035503 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDVVL 400 (788)
Q Consensus 324 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~ 400 (788)
+...+.+.|++++|++.++++.+.++ .+...+..+...+...|++++|...++... +.+..+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~ 69 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP---------------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 34567788999999988888755444 344566777788888899999999887765 346678
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHh
Q 035503 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480 (788)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 480 (788)
|..+...+.+.|++++|+..|+++.... +.+..++..+..++.+.|++++|...|+++.+.. +.+...+..+...+..
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 147 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 8999999999999999999999988763 3345578888999999999999999999887652 2245667778888888
Q ss_pred CCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 035503 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 560 (788)
.|++++|...|+++.+.. +.+..++..+...+...|++++|...++++++.+| .....+..++..+...|++++|...
T Consensus 148 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 148 LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988742 33467788888888999999999999999999887 6778888899999999999999998
Q ss_pred HhhCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCC
Q 035503 561 FDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637 (788)
Q Consensus 561 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 637 (788)
|++.. ..+..+|..++.++...|++++|++.|+++.+.+ +.+..++..+..++.+.|++++|+..|+++.+. .+
T Consensus 226 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p 302 (388)
T 1w3b_A 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CP 302 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cc
Confidence 87554 3456788889999999999999999999988853 335677888888899999999999999988753 23
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 035503 638 PSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 638 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
.+...+..++..+.+.|++++|.+.++++ ...| +..++..++.++...|++++|+..++++++++|+++.+|..++.+
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence 45778888999999999999999999887 3334 466888888999999999999999999999999999999999998
Q ss_pred HHhCCC
Q 035503 716 YAASGR 721 (788)
Q Consensus 716 ~~~~g~ 721 (788)
+.+.|+
T Consensus 383 ~~~~~~ 388 (388)
T 1w3b_A 383 LKEMQD 388 (388)
T ss_dssp HHHTCC
T ss_pred HHHccC
Confidence 887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.3e-26 Score=242.05 Aligned_cols=355 Identities=13% Similarity=0.097 Sum_probs=311.5
Q ss_pred HHHHHhhcCChHHHHHHHHhcc--cC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 035503 373 IVDMYAKCERIDNAKQVFNSII--LR-DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449 (788)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (788)
++..+.+.|++++|...++.+. .| +...+..+...+...|++++|...++...... +.+..+|..+...|.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4566778899999999998875 33 55677788888999999999999999988863 56778999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCchHHHHHHHHH
Q 035503 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGY 528 (788)
Q Consensus 450 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 528 (788)
++|...|+++.... +.+...|..+..++...|++++|...|+++.+. .|+ ...+..+...+...|++++|...++.
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999997652 335668999999999999999999999999984 455 45666777888899999999999999
Q ss_pred HHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh
Q 035503 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605 (788)
Q Consensus 529 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 605 (788)
+++..| .+...+..++..|...|++++|...|+++.. .+...|..+...+...|++++|+..|++..... +.+..
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 999887 6788999999999999999999999987654 455689999999999999999999999988863 33578
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTC 682 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 682 (788)
++..+..++...|++++|+..|+++.+ +.|+ ...+..++.+|.+.|++++|.+.++++ ..+++..++..++..+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 888899999999999999999999974 3454 678889999999999999999999998 2345678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
...|++++|+..++++++.+|+++.++..++.+|.+.|++++|...++++.+..
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999998753
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=6.4e-26 Score=241.68 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=116.2
Q ss_pred cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHH
Q 035503 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474 (788)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 474 (788)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++|
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 035503 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (788)
|.+|++.|++++|.++|++|.+.|..|+..|+..++..++..
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999888764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=7.6e-26 Score=241.08 Aligned_cols=188 Identities=12% Similarity=0.088 Sum_probs=174.7
Q ss_pred chHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC---------hhHHHHHHHHHHHhCCCCchh
Q 035503 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA---------LDEGKQAHAVAVINGMELDNV 319 (788)
Q Consensus 249 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 319 (788)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|+..+. ++.|.++|+.|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChh
Q 035503 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399 (788)
Q Consensus 320 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 399 (788)
+|+.||.+|++.|++++|.++|++|.+.+. .||..
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~---------------------------------------------~Pd~~ 141 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGI---------------------------------------------QPRLR 141 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTC---------------------------------------------CCCHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------------------------------------CCccc
Confidence 999999999999999999999999876655 57899
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHH
Q 035503 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479 (788)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 479 (788)
+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hC
Q 035503 480 QN 481 (788)
Q Consensus 480 ~~ 481 (788)
..
T Consensus 222 s~ 223 (501)
T 4g26_A 222 SE 223 (501)
T ss_dssp SH
T ss_pred cC
Confidence 63
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.1e-24 Score=232.47 Aligned_cols=439 Identities=9% Similarity=-0.047 Sum_probs=270.3
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 035503 250 AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329 (788)
Q Consensus 250 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (788)
.|......+.+.|++++|+..|+++...+ |+..++..+..++...|+++.|...++.+++.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45556677777888888888888887764 677777777777777788888888877777765 345566777777788
Q ss_pred hcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc----cCChhHHHHHH
Q 035503 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII----LRDVVLWNTLL 405 (788)
Q Consensus 330 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~ 405 (788)
+.|++++|...|+++...++. +......++..+........+.+.+..+. .++...+....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDF---------------NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSC---------------CGGGTHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCC---------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh
Confidence 888888887777776443321 11111111111111111111111110000 00000000000
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHh---CC
Q 035503 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ---NS 482 (788)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g 482 (788)
.... .....|+.......+..+...... ....-+.+...+......+.. .|
T Consensus 150 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (514)
T 2gw1_A 150 ERKD----------------KQENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPE 203 (514)
T ss_dssp -----------------------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTT
T ss_pred HHHh----------------hccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhc
Confidence 0000 000111111111000000000000 000001123334444444443 67
Q ss_pred CchHHHHHHHHHHh-----CCCCC--------CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 035503 483 CGNEAILFFQEMLE-----TGIKP--------STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549 (788)
Q Consensus 483 ~~~~A~~~~~~m~~-----~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (788)
++++|..+|+++.+ ....| +...+..+...+...|++++|...++.+.+..+. ...+..++.+|.
T Consensus 204 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~ 281 (514)
T 2gw1_A 204 SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMA 281 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHH
Confidence 77777777777766 21111 2345566666777777888888888877777764 777777788888
Q ss_pred HcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHH
Q 035503 550 KCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 626 (788)
..|++++|...++.+.. .+..+|..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|+..
T Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888877775543 345677788888888888888888888887753 23556777777788888888888888
Q ss_pred HHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHH
Q 035503 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM----PCDPD----AHIIGSLLSTCVK---SNETELAEYIS 695 (788)
Q Consensus 627 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~ 695 (788)
++++.+.. +.+...+..++..|.+.|++++|...++++ +..++ ...+..++..+.. .|++++|+..+
T Consensus 361 ~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 361 FSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp HHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 88886532 234567778888888888888888888776 22222 3478888888888 88888888888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 696 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+++++.+|+++.++..++.+|.+.|++++|...++++.+..+
T Consensus 439 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 888888888888888888888888888888888888877653
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=9.6e-23 Score=219.25 Aligned_cols=332 Identities=13% Similarity=0.072 Sum_probs=258.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 035503 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476 (788)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 476 (788)
+...+..+...+.+.|++++|+.+|+++.... +.+..++..+..+|...|++++|...|+++.+.+ +.+...|..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44556777777777777777777777777652 3456677777777777777777777777776552 234667777777
Q ss_pred HHHhCCCchHHHHHHHHHHhCCCCCCH----HHHHHH------------HHHhhccCchHHHHHHHHHHHHcCCCCChhH
Q 035503 477 GLTQNSCGNEAILFFQEMLETGIKPST----TTITCA------------LSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540 (788)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 540 (788)
+|...|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...++.+.+..+ .+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 777777777777777777763 3443 333333 4447788999999999999998877 67888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHH------
Q 035503 541 VTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD-SITFTNI------ 610 (788)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l------ 610 (788)
+..++.+|.+.|++++|+..|+.+.+ .+..+|..++.+|...|++++|+..|+++... .|+ ...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 89999999999999999999987653 56788999999999999999999999999875 444 3444333
Q ss_pred ------HHHhhccCcHHHHHHHHHhcHhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHH
Q 035503 611 ------LNACSHAGLVNEGLELFVGMFSDHQVKPS-----MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGS 677 (788)
Q Consensus 611 ------l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ 677 (788)
...|.+.|++++|+.+|+++... .|+ ..++..++.++.+.|++++|++.++++ .. +.+...|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 67899999999999999999854 455 347789999999999999999999997 33 346789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH------------HHHHhCC-----CcHHHHHHHHH-HHHCCCc
Q 035503 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS------------NAYAASG-----RWNEVSQVRDI-MKEKGLR 738 (788)
Q Consensus 678 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~~~~ 738 (788)
++.+|...|++++|+..++++++++|+++.++..++ ..|...| +.+++.+.+++ .++..+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999 4466666 56677888876 4554443
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=5e-23 Score=227.06 Aligned_cols=356 Identities=13% Similarity=0.015 Sum_probs=192.6
Q ss_pred cchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 035503 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327 (788)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 327 (788)
...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++++|...++.++... +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567778888889999999999999988764 4467777888888888888888888888888775 3456677777888
Q ss_pred HHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCC------hhHH
Q 035503 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD------VVLW 401 (788)
Q Consensus 328 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~ 401 (788)
+...|++++|+..|+.+. .++. .....+..+...+...+|...++.+...+ ....
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 163 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGD------------------FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------------------------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred HHHcCCHHHHHHHHHHHh-cCCC------------------CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence 888888888888776432 1110 11112233334444455666665554211 1112
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhc--------CCHHHHHHHHHHhhhCCCCCC-----
Q 035503 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNII-SWNSVILGFLRN--------GQMNEAKDMFLQMQSLGVQPN----- 467 (788)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~g~~~~----- 467 (788)
...+..+....+.+.+...+...... .+... ....+...+... |++++|..+|+++.+.... +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~ 240 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRE 240 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhH
Confidence 23333344444444443333222111 11111 222222222211 2556666666666544211 1
Q ss_pred --hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 468 --LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 468 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
...|..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...++.+.+..+ .+..++..++
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 317 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHH
Confidence 123444455556666666666666666652 34455555556666666666666666666666555 4455555555
Q ss_pred HHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHH
Q 035503 546 DMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 622 (788)
..|...|++++|+..|+.+.. .+..+|..+..++...|++++|+..++++.+.. +.+...+..+...+...|++++
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 555555555555555554322 233455555555555555555555555555432 2233444445555555555555
Q ss_pred HHHHHHhcH
Q 035503 623 GLELFVGMF 631 (788)
Q Consensus 623 A~~~~~~~~ 631 (788)
|+..|+++.
T Consensus 397 A~~~~~~a~ 405 (537)
T 3fp2_A 397 AIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.9e-22 Score=221.10 Aligned_cols=240 Identities=11% Similarity=-0.017 Sum_probs=157.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (788)
.|..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...++.+.+..+ .+..++..++.+|.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHH
Confidence 3444444455555555555555554442 22234444444445555555555555555555444 34445556666666
Q ss_pred HcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHH
Q 035503 550 KCGNIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 626 (788)
..|++++|...|+... ..+..+|..++..+...|++++|+..++++.+.. +.+...+..+...+...|++++|...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666665432 2344567777777777788888888888777653 33456677777778888888888888
Q ss_pred HHhcHhhcCCCCC----cchHHHHHHHHhh---cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035503 627 FVGMFSDHQVKPS----MEHFGCVVNLLSR---CGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEH 697 (788)
Q Consensus 627 ~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 697 (788)
++++.....-.++ ...+..++..+.+ .|++++|.+.++++ . .+.+..++..++..+...|++++|...+++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8877654322222 2377788888888 88888888888877 2 233567888899999999999999999999
Q ss_pred HHhcCCCCCchHHHHH
Q 035503 698 LLQLEPDNPGNYVALS 713 (788)
Q Consensus 698 ~~~~~p~~~~~~~~l~ 713 (788)
+++++|+++..+..+.
T Consensus 475 a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 475 SADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHCSSHHHHHHHHH
T ss_pred HHHhccccHHHHHHHH
Confidence 9999999888877663
No 11
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=1.8e-18 Score=194.01 Aligned_cols=364 Identities=12% Similarity=0.131 Sum_probs=283.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCc------hhHHHHHHHHHHcCCC---------chhHHHHHHHHHhhcCChHHH
Q 035503 322 SSIINFYSKVGLLEDAEVVFSRMVERDI------VTWNLLIASYVQSGQS---------DVVVASSIVDMYAKCERIDNA 386 (788)
Q Consensus 322 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A 386 (788)
...+.+|...|.+.+|+++++++.-.+. ..-+.++..-.+.... +......++..+...|.+++|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHH
Confidence 4456788999999999999999863322 3444565555554422 222344568888999999999
Q ss_pred HHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 035503 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466 (788)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~ 466 (788)
..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|+..|.+. .
T Consensus 1069 f~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A 1069 FAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred HHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence 999998742 2222233332 778899999998854 34678889999999999999999999764 2
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 035503 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546 (788)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 546 (788)
|...|..++.++.+.|++++|.++|....+.. +++...+.++.+|.+.++++....+. + + ++...+..+++
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-~--~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-G--PNNAHIQQVGD 1203 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-C--CCHHHHHHHHH
Confidence 78889999999999999999999999888743 44444445888899988888644442 1 2 45566778999
Q ss_pred HHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHH
Q 035503 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626 (788)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 626 (788)
.+...|++++|...|... ..|..++.+|.+.|++++|++.+++. .+..+|..+..+|...|++..|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999986 46999999999999999999999985 4568888899999999999999876
Q ss_pred HHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHh--cCCHHHHHHHHHHHHhcC
Q 035503 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVK--SNETELAEYISEHLLQLE 702 (788)
Q Consensus 627 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~ 702 (788)
... +..+++.+..++..|.+.|.+++|+.+++.. ..++.. ..|..++..+.+ -++..++.+.|..-+.+.
T Consensus 1273 gl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1273 GLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 543 3456778889999999999999999999777 444333 466666666654 468888888898888877
Q ss_pred C-----CCCchHHHHHHHHHhCCCcHHHHH
Q 035503 703 P-----DNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 703 p-----~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
| .+...|..+..+|.+.|+|+.|..
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7 678899999999999999999984
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.3e-21 Score=208.52 Aligned_cols=352 Identities=12% Similarity=0.068 Sum_probs=287.7
Q ss_pred CchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 035503 365 SDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441 (788)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 441 (788)
.+...+..++..+.+.|++++|+.+|+.+. +.+..+|..+...+...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 566688889999999999999999999886 3467889999999999999999999999999874 446788899999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCh---hhHHHH------------HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHH
Q 035503 442 GFLRNGQMNEAKDMFLQMQSLGVQPNL---ITWTTL------------ISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506 (788)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 506 (788)
+|.+.|++++|...|+++.+.. +.+. ..|..+ ...+...|++++|+..|+++.+.. +.+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 9999999999999999998762 2233 555555 444889999999999999999853 4567788
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHH--------
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAM-------- 575 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l-------- 575 (788)
..+..++...|++++|...++.+.+..+ .+...+..++.+|...|++++|+..|+.+.. .+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999877 6788999999999999999999999987653 334445444
Q ss_pred ----HHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHH
Q 035503 576 ----ISGYAMHGLAVEALALFKNLQQKGIDPD-----SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGC 645 (788)
Q Consensus 576 ----~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 645 (788)
+..+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|+..++++... .| +...+..
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~ 334 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 88999999999999999999885 454 346778888999999999999999998753 35 5788889
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHhcCCCC
Q 035503 646 VVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLST------------CVKSN-----ETELAEYISEH-LLQLEPDN 705 (788)
Q Consensus 646 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~p~~ 705 (788)
++.+|...|++++|...++++ ...|+ ...+..+..+ |...| +.+++.+.|++ +++..|++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998 45554 4566666633 33334 56788888987 88888884
Q ss_pred Cc----------hHHHHHHHHHhCCCcHHH
Q 035503 706 PG----------NYVALSNAYAASGRWNEV 725 (788)
Q Consensus 706 ~~----------~~~~l~~~~~~~g~~~~A 725 (788)
.. .+..++.+|...|+.+++
T Consensus 415 ~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 415 FQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 32 455566666666665543
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.3e-21 Score=215.59 Aligned_cols=434 Identities=12% Similarity=0.043 Sum_probs=282.5
Q ss_pred hhhhhHHHHHhHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 035503 217 VFVASSLIDMYGKCGDLEEARKVFDGMIA---RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293 (788)
Q Consensus 217 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 293 (788)
...+..+...+.+.|++++|...|+++.. .+...|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 45677788888888888888888888743 366788888888888888888888888888764 44677788888888
Q ss_pred cCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHH
Q 035503 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373 (788)
Q Consensus 294 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l 373 (788)
...|++++|...++ .... .|+. ....+..+...+....|...++.+....+.. ..........
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~------------~~~~~~~~~~ 166 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGR------------GSQVLPSNTS 166 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------------------CCCCCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccc------------cccccchHhH
Confidence 88888888888885 3322 2221 1223445556666678888888876643311 0111123344
Q ss_pred HHHHhhcCChHHHHHHHHhcccCChh---HHHHHHHHHHHc--------CChhHHHHHHHHHHHcCCCCc--------hh
Q 035503 374 VDMYAKCERIDNAKQVFNSIILRDVV---LWNTLLAAYADL--------GRSGEASRLFYQMQLEGISPN--------II 434 (788)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~~~--------~~ 434 (788)
+..+....+.+.+...+......+.. ....+...+... |++++|..+++++... .|+ ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~ 244 (537)
T 3fp2_A 167 LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAAL 244 (537)
T ss_dssp HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHH
Confidence 55566666777776666665544433 233333332222 3677888888888765 333 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 035503 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514 (788)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 514 (788)
++..+...+...|++++|...|+++.+. .|+...|..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 4666667788888888888888888765 3457778888888888888888888888888743 345667778888888
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHH
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALAL 591 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 591 (788)
..|++++|...++.+++..+ .+...+..++.+|...|++++|...|+.+.. .+...|..++.++...|++++|++.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 88888888888888888876 5667788888888888888888888876543 4556788888888888888888888
Q ss_pred HHHHHHcCCCC-----CHhHHHHHHHHhhcc----------CcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCCh
Q 035503 592 FKNLQQKGIDP-----DSITFTNILNACSHA----------GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656 (788)
Q Consensus 592 ~~~m~~~~~~p-----~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 656 (788)
|+++.+..... ....+..+..++... |++++|+..|+++.+. .|
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p------------------ 459 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL---DP------------------ 459 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH---CT------------------
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh---CC------------------
Confidence 88876642110 011122222334444 5555555555444321 11
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 035503 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 657 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
.+...+..++..+...|++++|+..++++++++|+++..
T Consensus 460 -------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 460 -------------RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp -------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred -------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 233455566666666666666666666666666665444
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=5.6e-18 Score=190.08 Aligned_cols=349 Identities=15% Similarity=0.116 Sum_probs=266.0
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHH
Q 035503 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403 (788)
Q Consensus 324 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 403 (788)
+...+...|.+++|..+|++....+ .++-..+...+++++|.++.++. .+..+|..
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~----------------------~A~~VLie~i~nldrAiE~Aerv--n~p~vWsq 1110 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNT----------------------SAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQ 1110 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHH----------------------HHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHH
Confidence 4556667777777777777754211 11112223677899999998876 45778999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCC
Q 035503 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483 (788)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 483 (788)
+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.++
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence 999999999999999999664 467788889999999999999999999887654 333334458999999998
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhh
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (788)
+++...+ +. .++...+..+...|...|++++|..+|..+ ..|..++..|.+.|++++|.+.+++
T Consensus 1183 leele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8854433 22 456677778999999999999999999885 4788999999999999999999997
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cch
Q 035503 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEH 642 (788)
Q Consensus 564 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~ 642 (788)
. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+ ++.+. ...
T Consensus 1247 A--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gm 1316 (1630)
T 1xi4_A 1247 A--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGM 1316 (1630)
T ss_pred h--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHH
Confidence 7 5568899999999999999999887654 33456667788889999999999999998776 55544 455
Q ss_pred HHHHHHHHhh--cCChHHHHHHHHhC-CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------c
Q 035503 643 FGCVVNLLSR--CGNLDEALRVILTM-PCD------PDAHIIGSLLSTCVKSNETELAEYISEHLLQ------------L 701 (788)
Q Consensus 643 ~~~l~~~~~~--~g~~~~A~~~~~~~-~~~------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~ 701 (788)
|+.|+.+|.+ -++.-++.++|.+- ..+ .+...|..+...|.+.|+++.|....-.... .
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~ 1396 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 1396 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc
Confidence 6667777754 55777777777654 332 2456899999999999999999843332221 2
Q ss_pred CCCCCchHHHHHHHHHhCC---------------CcHHHHHHHH
Q 035503 702 EPDNPGNYVALSNAYAASG---------------RWNEVSQVRD 730 (788)
Q Consensus 702 ~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 730 (788)
.+.+++.|+..+..|...+ +++.+.++++
T Consensus 1397 kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 4667888888888888777 7777777776
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.1e-19 Score=188.67 Aligned_cols=312 Identities=12% Similarity=0.047 Sum_probs=200.7
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 478 (788)
..+..+...+...|++++|+..|+++.... +.+..++..+...+...|++++|...|+++.+.. +.+...|..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 445556666666666677777666666652 3345566666666677777777777777665442 22456666666777
Q ss_pred HhCCCchHHHHHHHHHHhCCCCC---C-HHHHHHH------------HHHhhccCchHHHHHHHHHHHHcCCCCChhHHH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKP---S-TTTITCA------------LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p---~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 542 (788)
...|++++|...|+++.+. .| + ...+..+ ...+...|++++|...++.+.+..+ .+..++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 7777777777777777653 34 2 2222222 4566677777777777777777766 5667777
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHH-----------
Q 035503 543 SLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT----------- 608 (788)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----------- 608 (788)
.++.++...|++++|...++.+.. .+..+|..++..+...|++++|+..|++..+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHH
Confidence 777777777777777777775543 445667777777777788888888887777643 12222222
Q ss_pred -HHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc-----chHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHH
Q 035503 609 -NILNACSHAGLVNEGLELFVGMFSDHQVKPSM-----EHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLS 680 (788)
Q Consensus 609 -~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~ 680 (788)
.+...+...|++++|+..++++... .|+. ..+..++.++.+.|++++|.+.++++ . .+.+...|..++.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 2244566777777777777777643 2332 22335667777777777777777766 2 2234566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
.+...|++++|+..++++++++|+++.++..+..++...
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 777777777777777777777777777777666665443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=6.4e-19 Score=182.92 Aligned_cols=299 Identities=14% Similarity=0.079 Sum_probs=251.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035503 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511 (788)
Q Consensus 432 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 511 (788)
|...+..+...+...|++++|...|+++.+.. +.+...|..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45667788899999999999999999997652 3467889999999999999999999999999853 335678888999
Q ss_pred HhhccCchHHHHHHHHHHHHcCCC--CChhHHHHH------------HHHHHHcCCHHHHHHHHhhCCC---CChhhHHH
Q 035503 512 ACTDVASLRNGRAIHGYLIRHDLC--LPTPIVTSL------------VDMYAKCGNIHQAKRVFDISPS---KELPVYNA 574 (788)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 574 (788)
.+...|++++|...++.+.+..+. .+...+..+ +..+...|++++|+..++.+.+ .+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999999987651 233344444 6889999999999999987643 56678999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc-chHH---------
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM-EHFG--------- 644 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~--------- 644 (788)
+..++...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+. .|+. ..+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHH
Confidence 9999999999999999999998864 446788888999999999999999999999754 3443 3222
Q ss_pred ---HHHHHHhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 035503 645 ---CVVNLLSRCGNLDEALRVILTM-PCDPD-A----HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 645 ---~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
.++..+.+.|++++|.+.++++ ...|+ . ..+..++..+...|++++|+..++++++.+|+++.++..++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3377799999999999999987 22333 2 2355678889999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHCC
Q 035503 716 YAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 716 ~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|...|++++|...++++.+..
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999998754
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.6e-19 Score=182.45 Aligned_cols=289 Identities=11% Similarity=-0.015 Sum_probs=192.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035503 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510 (788)
Q Consensus 431 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (788)
.+...+..+...+...|++++|..+|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344444455555555555555555555554331 2233444445555555566666666666655531 22344555555
Q ss_pred HHhhccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHH
Q 035503 511 SACTDVA-SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAV 586 (788)
Q Consensus 511 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 586 (788)
..+...| ++++|...++.+++..+ .+...+..++.++...|++++|+..|+.... .+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 5555555 56666666666665554 4455666667777777777777777665432 33456666777777888888
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC-------CCCCcchHHHHHHHHhhcCChHHH
Q 035503 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ-------VKPSMEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 587 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 659 (788)
+|++.++++.+.. +.+...+..+...+...|++++|...++++..... .+.....+..++.+|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888877653 33556777777778888888888888887765321 123356778888899999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhCCCcH
Q 035503 660 LRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY-AASGRWN 723 (788)
Q Consensus 660 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 723 (788)
.+.++++. .+.+...|..++..+...|++++|+..++++++++|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99888872 2335678889999999999999999999999999999999999999988 5566543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=9.6e-19 Score=179.23 Aligned_cols=267 Identities=14% Similarity=0.061 Sum_probs=231.6
Q ss_pred CCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHH
Q 035503 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543 (788)
Q Consensus 464 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 543 (788)
.+.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|...++.+++..+ .+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 34577788889999999999999999999998753 44455666778888999999999999999999887 67888999
Q ss_pred HHHHHHHcC-CHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc
Q 035503 544 LVDMYAKCG-NIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619 (788)
Q Consensus 544 l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 619 (788)
++..+...| ++++|...|+.... .+...|..++..+...|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 999999999 99999999987654 456789999999999999999999999998864 3345677778889999999
Q ss_pred HHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC----C-------CCCHHHHHHHHHHHHhcCC
Q 035503 620 VNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP----C-------DPDAHIIGSLLSTCVKSNE 687 (788)
Q Consensus 620 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~-------~p~~~~~~~l~~~~~~~g~ 687 (788)
+++|...++++.+ ..|+ ...+..++..+.+.|++++|...++++. . +.....+..++..+...|+
T Consensus 175 ~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 175 SKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp HHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999974 4454 6778899999999999999999998871 1 3345789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 688 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+++|+..++++++.+|+++.++..++.+|.+.|++++|...++++.+..
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999876543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=2.9e-17 Score=177.84 Aligned_cols=378 Identities=10% Similarity=-0.001 Sum_probs=290.6
Q ss_pred chhHHHHHHHHHHh----cCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhh----cCChHHHHH
Q 035503 317 DNVLGSSIINFYSK----VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK----CERIDNAKQ 388 (788)
Q Consensus 317 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~ 388 (788)
+......+...|.. .+++++|...|++..+.+ ++..+..|...|.. .+++++|..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-----------------YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455556666666 677777777777654322 23355566666666 777888888
Q ss_pred HHHhcccC-ChhHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHh
Q 035503 389 VFNSIILR-DVVLWNTLLAAYAD----LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR----NGQMNEAKDMFLQM 459 (788)
Q Consensus 389 ~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~ 459 (788)
.|++.... ++..+..+...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|...|++.
T Consensus 101 ~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 101 WYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 88776543 56677778888877 788999999999988765 56677777788877 78899999999998
Q ss_pred hhCCCCCChhhHHHHHHHHHh----CCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cCchHHHHHHHHHHHH
Q 035503 460 QSLGVQPNLITWTTLISGLTQ----NSCGNEAILFFQEMLETGIKPSTTTITCALSACTD----VASLRNGRAIHGYLIR 531 (788)
Q Consensus 460 ~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~ 531 (788)
.+.| +...+..+...|.. .+++++|..+|++..+.+ +......+...+.. .++.++|...++.+.+
T Consensus 178 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 178 AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 7764 67788888888887 889999999999988754 45566666666664 7889999999999887
Q ss_pred cCCCCChhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCC
Q 035503 532 HDLCLPTPIVTSLVDMYAK----CGNIHQAKRVFDISPS-KELPVYNAMISGYAMH-----GLAVEALALFKNLQQKGID 601 (788)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~ 601 (788)
.+ +...+..++.+|.. .++.++|+..|+...+ .+..++..+...|... +++++|+.+|++..+.+
T Consensus 252 ~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 252 QG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred CC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 64 45677888888888 8999999999987654 5667788888888887 89999999999998865
Q ss_pred CCHhHHHHHHHHhhccC---cHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHH
Q 035503 602 PDSITFTNILNACSHAG---LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR----CGNLDEALRVILTMPCDPDAHI 674 (788)
Q Consensus 602 p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~ 674 (788)
+...+..+...|...| ++++|+++|++..+. .++..+..|+.+|.. .++.++|.++++++....+...
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a 401 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAA 401 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 4556666777776656 889999999998753 467788899999988 8999999999999844456778
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 675 IGSLLSTCVK----SNETELAEYISEHLLQLEPD---NPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 675 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
+..++..|.. .++.++|...|+++++.+|+ ++.....|+.++.+. .+.|.+..++.
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~--~~~a~~~a~~~ 464 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ--LQQAELLSQQY 464 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH--HHHHHHHHHHH
Confidence 8899999987 89999999999999999954 778888888776643 34444333333
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1.3e-16 Score=172.83 Aligned_cols=352 Identities=10% Similarity=0.002 Sum_probs=298.7
Q ss_pred CchhHHHHHHHHHhh----cCChHHHHHHHHhccc-CChhHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCchhH
Q 035503 365 SDVVVASSIVDMYAK----CERIDNAKQVFNSIIL-RDVVLWNTLLAAYAD----LGRSGEASRLFYQMQLEGISPNIIS 435 (788)
Q Consensus 365 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~ 435 (788)
.++.....+...|.. .+++++|...|++... .++..+..+...|.. .+++++|.+.|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 344566677777777 8999999999998764 477788889999998 899999999999998875 5677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHh----CCCchHHHHHHHHHHhCCCCCCHHHHH
Q 035503 436 WNSVILGFLR----NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ----NSCGNEAILFFQEMLETGIKPSTTTIT 507 (788)
Q Consensus 436 ~~~ll~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 507 (788)
+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7778888888 889999999999997775 67788888888887 889999999999999864 567777
Q ss_pred HHHHHhhc----cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHH
Q 035503 508 CALSACTD----VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK----CGNIHQAKRVFDISPS-KELPVYNAMISG 578 (788)
Q Consensus 508 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~ 578 (788)
.+...+.. .++.++|...++++.+.+ +...+..++.+|.. .+++++|...|+...+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 899999999999999875 46788889999987 8999999999987654 566778888888
Q ss_pred HHh----CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhcc-----CcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 579 YAM----HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA-----GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 579 ~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
|.. .++.++|+++|++..+.| +...+..+...|... +++++|+.+|++..+. .+...+..++.+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 888 899999999999988764 455666777777776 8999999999998653 345677788888
Q ss_pred HhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----
Q 035503 650 LSRCG---NLDEALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISEHLLQLEPDNPGNYVALSNAYAA---- 718 (788)
Q Consensus 650 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 718 (788)
|.+.| +.++|.++++++....++..+..++..|.. .+++++|+..++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88766 889999999998544678899999999988 899999999999998864 68899999999999
Q ss_pred CCCcHHHHHHHHHHHHCCC
Q 035503 719 SGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 719 ~g~~~~A~~~~~~~~~~~~ 737 (788)
.+++++|...|++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998874
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=1e-16 Score=175.43 Aligned_cols=399 Identities=11% Similarity=0.055 Sum_probs=269.3
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc--
Q 035503 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII-- 394 (788)
Q Consensus 317 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 394 (788)
+...|..++. +.+.|++++|..+|+++.+..+ .+...+..++..+.+.|++++|..+|++..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P---------------~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFP---------------SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 4455555665 3556666666666666655544 334455666666666666777777776664
Q ss_pred cCChhHHHHHHHHH-HHcCChhHHHH----HHHHHHHc-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 035503 395 LRDVVLWNTLLAAY-ADLGRSGEASR----LFYQMQLE-GISP-NIISWNSVILGFLR---------NGQMNEAKDMFLQ 458 (788)
Q Consensus 395 ~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~m~~~-~~~~-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~ 458 (788)
.|++..|...+... ...|+.++|.+ +|++.+.. |..| +...|...+....+ .|+++.|..+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 24555565555432 34566665554 66665543 4443 34455555555443 5777888888888
Q ss_pred hhhCCCCCChhhHHHHHHHH-------------HhCCCchHHHHHHHHH------HhCC---CCCCH--------HHHHH
Q 035503 459 MQSLGVQPNLITWTTLISGL-------------TQNSCGNEAILFFQEM------LETG---IKPST--------TTITC 508 (788)
Q Consensus 459 ~~~~g~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~~---~~p~~--------~~~~~ 508 (788)
..+....+....|....... .+.+++..|..+++++ .+.. ++|+. ..|..
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 76631111123333222211 1234566777766653 2211 24431 33443
Q ss_pred HHHHhhc----cCch----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHH-------cCCHH-------HHHHHHhhCCC
Q 035503 509 ALSACTD----VASL----RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK-------CGNIH-------QAKRVFDISPS 566 (788)
Q Consensus 509 ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~ 566 (788)
.+..... .++. ..+..++++++...| .++.+|..++..+.+ .|+++ +|..+|++...
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 3332221 1222 367789999999877 778899999998886 79987 89999987653
Q ss_pred ----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-
Q 035503 567 ----KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS- 639 (788)
Q Consensus 567 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~- 639 (788)
.+...|..++..+.+.|++++|..+|+++++. .|+. ..|..++..+.+.|++++|..+|+++.+ ..|.
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~ 389 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTR 389 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCC
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCc
Confidence 34678999999999999999999999999985 5542 4788888888889999999999999974 3444
Q ss_pred cchHHHHHHH-HhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHHH
Q 035503 640 MEHFGCVVNL-LSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG----NYVAL 712 (788)
Q Consensus 640 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l 712 (788)
...+...+.. +...|+.++|..+|+++ .. +.+...|..++..+...|+.++|+.+|+++++..|.++. .|...
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3344333333 34689999999999987 22 335788999999999999999999999999999887665 78788
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 713 SNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 713 ~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+......|+.+.+..+++++.+.-+
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 8888899999999999999877653
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=1.2e-18 Score=181.71 Aligned_cols=281 Identities=10% Similarity=-0.021 Sum_probs=200.2
Q ss_pred cCCHHHHHH-HHHHhhhCCC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHH
Q 035503 446 NGQMNEAKD-MFLQMQSLGV---QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521 (788)
Q Consensus 446 ~g~~~~A~~-~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 521 (788)
.|++++|.. .|++...... ..+...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 5555432211 1124456666666666677777777776666642 3344556666666666677777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHH----------------HHHHHHHhC
Q 035503 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYN----------------AMISGYAMH 582 (788)
Q Consensus 522 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----------------~l~~~~~~~ 582 (788)
|...++.+++..+ .+..++..++.+|...|++++|...|+.+.. .+...+. .+...+ ..
T Consensus 117 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 194 (368)
T 1fch_A 117 AISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SD 194 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hc
Confidence 7777776666665 4566666677777777777777777664432 1111121 233334 88
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHH
Q 035503 583 GLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEAL 660 (788)
Q Consensus 583 g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 660 (788)
|++++|+..|+++.+..... +..++..+...+...|++++|+..|+++... .|+ ...+..++..+.+.|++++|.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998864221 4778888899999999999999999998753 344 678889999999999999999
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhCCCcHHHHH
Q 035503 661 RVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN-----------PGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 661 ~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
+.++++ . .+.+...+..++.++...|++++|+..+++++++.|++ +.+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987 2 23456789999999999999999999999999999987 7899999999999999999999
Q ss_pred HHHHH
Q 035503 728 VRDIM 732 (788)
Q Consensus 728 ~~~~~ 732 (788)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 88754
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.7e-17 Score=177.76 Aligned_cols=363 Identities=12% Similarity=0.037 Sum_probs=247.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhccc-----------C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHc-----C-
Q 035503 367 VVVASSIVDMYAKCERIDNAKQVFNSIIL-----------R-DVVLWNTLLAAYADLGRSGEASRLFYQMQLE-----G- 428 (788)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~- 428 (788)
...|+.|..++...|++++|++.|++... + ...+|+.+...|...|++++|...+++.... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 44788899999999999999999987531 2 3467999999999999999999999988753 1
Q ss_pred CCC-chhHHHHHHHHHHh--cCCHHHHHHHHHHhhhCCCCCChhhHHHHHHH---HHhCCCchHHHHHHHHHHhCCCCCC
Q 035503 429 ISP-NIISWNSVILGFLR--NGQMNEAKDMFLQMQSLGVQPNLITWTTLISG---LTQNSCGNEAILFFQEMLETGIKPS 502 (788)
Q Consensus 429 ~~~-~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p~ 502 (788)
..+ ...++..+..++.+ .+++++|+..|++..+.. +-++..+..+..+ +...++.++|++.+++.++. .|+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCc
Confidence 112 23556666555555 457999999999987652 2245555555544 44568889999999998874 444
Q ss_pred -HHHHHHHHHHhh----ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHH
Q 035503 503 -TTTITCALSACT----DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNA 574 (788)
Q Consensus 503 -~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 574 (788)
...+..+...+. ..++.++|..+++.+....+ ....++..++..|...|++++|+..|++..+ .+..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 444444444333 45678899999999999888 7788899999999999999999999987654 44556777
Q ss_pred HHHHHHhC-------------------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC
Q 035503 575 MISGYAMH-------------------GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635 (788)
Q Consensus 575 l~~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 635 (788)
+..+|... +..++|+..+++..+.. +.+...+..+...+...|++++|+..|++++..
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-- 363 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-- 363 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 76665432 33567888888877754 345567788888999999999999999988743
Q ss_pred CCCCcc----hHHHHHHH-HhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 636 VKPSME----HFGCVVNL-LSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 636 ~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
.|+.. .+..++.. +...|+.++|+..++++ ...|+...+. +....++.+++++++.+|+++.+|
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHH
Confidence 34432 23334433 35788999999999887 4556543322 223456678888999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEE
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 746 (788)
..||.+|...|++++|.+.|++.++.+.......+|+
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999999999886554444553
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=8.4e-18 Score=169.79 Aligned_cols=282 Identities=12% Similarity=0.107 Sum_probs=105.4
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHH
Q 035503 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307 (788)
Q Consensus 228 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 307 (788)
-+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996654 8999999999999999999999652 577788888888888888888888777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHH
Q 035503 308 VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAK 387 (788)
Q Consensus 308 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (788)
...+. .++..+.+.++.+|.+.|+++++.++++.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------------------------------------- 119 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING-------------------------------------------- 119 (449)
T ss_dssp -------------------------CHHHHTTTTTC--------------------------------------------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--------------------------------------------
Confidence 76664 34456677777777777777776655532
Q ss_pred HHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 035503 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467 (788)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~ 467 (788)
|+..+|+.++..|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.++ .+
T Consensus 120 --------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~ 176 (449)
T 1b89_A 120 --------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 176 (449)
T ss_dssp --------C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TC
T ss_pred --------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CC
Confidence 23345566666666666666666666644 24566666666666666666666665 15
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 035503 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547 (788)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (788)
+.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|.++++..+++..+.... ....+|+.++.+
T Consensus 177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~-ah~~~ftel~il 250 (449)
T 1b89_A 177 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAIL 250 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT-CCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH-HHHHHHHHHHHH
Confidence 566666666666666666664433332 12222233455666666666666666666666553 566677777777
Q ss_pred HHH--cCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhCCCHHHHHHHH
Q 035503 548 YAK--CGNIHQAKRVFDISPS--------KELPVYNAMISGYAMHGLAVEALALF 592 (788)
Q Consensus 548 ~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~ 592 (788)
|++ .+++.+.++.|..-.. .+...|..++-.|...++++.|....
T Consensus 251 ~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 251 YSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 765 3566667776654332 23457888888888999998887743
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.5e-17 Score=172.97 Aligned_cols=257 Identities=10% Similarity=-0.023 Sum_probs=172.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (788)
|..+...+.+.|++++|..+|+++++.. +.+..++..+...+...|++++|...++++++..+ .+...+..++.+|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence 4444444444444444444444444421 22333444444444444555555555554444443 344455555555555
Q ss_pred cCCHHHHHHHHhhCCCCC-------------hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHhhc
Q 035503 551 CGNIHQAKRVFDISPSKE-------------LPVYNAMISGYAMHGLAVEALALFKNLQQKGID-PDSITFTNILNACSH 616 (788)
Q Consensus 551 ~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~ 616 (788)
.|++++|+..|+++...+ ...+..+...+...|++++|+..|+++.+.... ++...+..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 555555555555443211 123445678889999999999999999886422 157788888899999
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
.|++++|+..|+++.+.. +.+...+..++.+|.+.|++++|++.++++ ...| +..++..++.+|...|++++|+..
T Consensus 226 ~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999987542 234778889999999999999999999887 3333 477899999999999999999999
Q ss_pred HHHHHhcCCC------------CCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 695 SEHLLQLEPD------------NPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 695 ~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
+++++++.|+ +..+|..++.++...|+.+.+....++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999887 367899999999999999998887764
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=5.3e-17 Score=169.09 Aligned_cols=249 Identities=15% Similarity=0.099 Sum_probs=145.4
Q ss_pred HhhcCChHHHHH-HHHhccc---C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 035503 377 YAKCERIDNAKQ-VFNSIIL---R----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448 (788)
Q Consensus 377 ~~~~~~~~~A~~-~~~~~~~---~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 448 (788)
+.-.|++++|.. .|++... . +...+..+...+...|++++|+..|+++.+.. +.+..++..+..++.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334577888888 7776542 1 34568888899999999999999999998874 4567788888899999999
Q ss_pred HHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH-HHHH---------------HHHH
Q 035503 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT-TITC---------------ALSA 512 (788)
Q Consensus 449 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~---------------ll~~ 512 (788)
+++|...|+++.+.. +.+...|..+..++...|++++|...++++... .|+.. .+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999987653 346788889999999999999999999999874 34332 2111 1222
Q ss_pred hhccCchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHH
Q 035503 513 CTDVASLRNGRAIHGYLIRHDLCL-PTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEA 588 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 588 (788)
+...|++++|...++.+++..+.. +..++..++.+|...|++++|+..|+.+.. .+..+|..++.++...|++++|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 225555555555555555554421 344444555555555555555554443321 2233444444444444444444
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 589 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
+..|+++.+.. +.+...+..+..++.+.|++++|...|+++
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444444431 122334444444444444444444444444
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.7e-17 Score=167.59 Aligned_cols=287 Identities=13% Similarity=0.093 Sum_probs=128.2
Q ss_pred HhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHH
Q 035503 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408 (788)
Q Consensus 329 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 408 (788)
-+.|++++|.++++++..+ .+|..++.++.+.|++++|++.|.+. +|..+|..++..+
T Consensus 14 ~~~~~ld~A~~fae~~~~~--------------------~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~a 71 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--------------------AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAA 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--------------------HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 3667788888888887433 25667777777888899999888654 5677888888888
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHH
Q 035503 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488 (788)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 488 (788)
...|++++|+.+++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|.
T Consensus 72 e~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT-------CC----------------CTTTHH
T ss_pred HhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999977766654 4557778888899999999988887774 357778999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC
Q 035503 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568 (788)
Q Consensus 489 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (788)
.+|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.++...|+++.|......+. .+
T Consensus 143 ~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ 206 (449)
T 1b89_A 143 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VH 206 (449)
T ss_dssp HHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TC
T ss_pred HHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hC
Confidence 999876 36788888889999999998888887 467888888899999999999977776654 44
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhh--ccCcHHHHHHHHHhcHhhcCCCC------Cc
Q 035503 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS--HAGLVNEGLELFVGMFSDHQVKP------SM 640 (788)
Q Consensus 569 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~~p------~~ 640 (788)
+.-...++..|.+.|++++|+.++++.+... +-....|+.+.-+|+ +-++..+.++.|..- -.++| +.
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~ 282 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQA 282 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHH
Confidence 4445568888889999999999998866443 223445555544444 345555555555432 25555 36
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
..|..++..|...++++.|...+-+.
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 67778888888889988887766555
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1e-16 Score=159.38 Aligned_cols=272 Identities=10% Similarity=0.006 Sum_probs=192.8
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHH
Q 035503 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522 (788)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 522 (788)
....|++..|+..++.+......+.......+..+|...|++++|+..++.. -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4456666666666665543311111223344566677777777766655431 244555666666666777777777
Q ss_pred HHHHHHHHHcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 035503 523 RAIHGYLIRHDL-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601 (788)
Q Consensus 523 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 601 (788)
.+.++.++..+. +.+..++..++.+|...|++++|++.++. ..+...+..++..+.+.|++++|++.|+++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 777777766542 24566778888999999999999999998 5677889999999999999999999999998864
Q ss_pred CCHhHH---HHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHH
Q 035503 602 PDSITF---TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIG 676 (788)
Q Consensus 602 p~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 676 (788)
|+.... ..++..+...|++++|..+|+++.+. .+.+...+..++.++.+.|++++|.+.++++ ... .++.++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 554321 12233445669999999999999865 3445778888999999999999999999887 333 3566888
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHH
Q 035503 677 SLLSTCVKSNETEL-AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728 (788)
Q Consensus 677 ~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 728 (788)
.++..+...|+.++ +...++++++++|+++.+.. +..+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 88888888888765 57888999999999876643 45555555555443
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=2.5e-17 Score=168.41 Aligned_cols=275 Identities=9% Similarity=-0.029 Sum_probs=185.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 035503 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514 (788)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 514 (788)
.+..+...+...|++++|..+|+++.+.. +.+...|..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455556666666666666666664432 2245555556666666666666666666665532 223444555555555
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHH-HH-HHHhCCCHHHHHHHH
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM-IS-GYAMHGLAVEALALF 592 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~~ 592 (788)
..|++++|...++.+.+..+. +...+..+.... ++......+ .. .+...|++++|+..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 555555555555555554442 111111110000 000001111 22 366778899999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCC
Q 035503 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDP 670 (788)
Q Consensus 593 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p 670 (788)
+++.+.. +.+...+..+...+...|++++|+..++++.... +.+...+..++..+.+.|++++|.+.++++ . .+.
T Consensus 162 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 162 HAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9988764 3467788888888999999999999999887532 234677889999999999999999999887 2 234
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD------------NPGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 671 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
+...+..++..+...|++++|+..++++++..|+ ++..+..++.+|.+.|++++|..++++.+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999 78899999999999999999999987543
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=5.7e-17 Score=168.63 Aligned_cols=233 Identities=12% Similarity=0.003 Sum_probs=197.4
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHH
Q 035503 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISG 578 (788)
Q Consensus 502 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 578 (788)
+...+......+...|++++|...++.+++..+ .+..++..++.+|...|++++|+..|+++.. .+..+|..++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345588888899999999999999999999988 6788999999999999999999999987653 556789999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCH-h----------HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHH
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDPDS-I----------TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVV 647 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p~~-~----------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 647 (788)
|...|++++|+..|+++.+.. |+. . .+..+...+...|++++|+.+|+++.....-.++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998853 332 2 223346788999999999999999986533223578888999
Q ss_pred HHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHH
Q 035503 648 NLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 725 (788)
..|.+.|++++|++.++++ . .+.+..+|..++.+|...|++++|+..++++++.+|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 2 3345779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCC
Q 035503 726 SQVRDIMKEKGL 737 (788)
Q Consensus 726 ~~~~~~~~~~~~ 737 (788)
...++++++..+
T Consensus 301 ~~~~~~al~~~~ 312 (365)
T 4eqf_A 301 VSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999999987653
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2.3e-14 Score=156.79 Aligned_cols=137 Identities=18% Similarity=0.153 Sum_probs=91.0
Q ss_pred HHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCC
Q 035503 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282 (788)
Q Consensus 206 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 282 (788)
+..++.. +.+..+|..++. +.+.|++++|..+|+++... +...|...+..+.+.|++++|..+|+++... .|+
T Consensus 3 e~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~ 78 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLH 78 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCC
T ss_pred hhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC
Confidence 3334443 556677777777 46678888888888877442 4456777777778888888888888887764 366
Q ss_pred HHHHHHHHHHh-cCcCChhHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCChhHHHHHHHhcCC
Q 035503 283 RVSVTSILSAS-ANLDALDEGKQ----AHAVAVIN-GMEL-DNVLGSSIINFYSK---------VGLLEDAEVVFSRMVE 346 (788)
Q Consensus 283 ~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 346 (788)
...|...+... ...|+.+.|.+ +++..+.. |..+ +...|...+....+ .|+++.|+.+|++..+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66665555422 23466665554 56655543 4443 45567777766554 7889999999999876
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.5e-16 Score=158.17 Aligned_cols=248 Identities=11% Similarity=0.022 Sum_probs=202.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 035503 475 ISGLTQNSCGNEAILFFQEMLETGIKPST--TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (788)
|.-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. ..+ ++...+..++..+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~-~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSA-PELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSC-HHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCC-hhHHHHHHHHHHHcCCC
Confidence 3445678999999999988654 34544 3456678899999999999876644 233 56678888999999999
Q ss_pred CHHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 553 NIHQAKRVFDISP-----SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 553 ~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
+.++|++.++.+. ..+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998753 23456778888999999999999999988 457788888899999999999999999
Q ss_pred HhcHhhcCCCCCcchH---HHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 035503 628 VGMFSDHQVKPSMEHF---GCVVNLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702 (788)
Q Consensus 628 ~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 702 (788)
+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...|+.++.++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999754 4664322 12334455669999999999998 244567889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCcHH-HHHHHHHHHHCCC
Q 035503 703 PDNPGNYVALSNAYAASGRWNE-VSQVRDIMKEKGL 737 (788)
Q Consensus 703 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 737 (788)
|+++.++.+++.++...|++++ +.++++++++..+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999986 5789999887663
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.1e-15 Score=164.95 Aligned_cols=398 Identities=12% Similarity=-0.012 Sum_probs=208.4
Q ss_pred cchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhC-CCCchhHHHHHHH
Q 035503 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING-MELDNVLGSSIIN 326 (788)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~ 326 (788)
+..||.|..++...|++++|++.|++..+. ........ ......+|+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 446777777777778888887777765431 00000000 1223456778888
Q ss_pred HHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHH-cCCCchhHHHHHHHHHhh--cCChHHHHHHHHhcc--cC-ChhH
Q 035503 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ-SGQSDVVVASSIVDMYAK--CERIDNAKQVFNSII--LR-DVVL 400 (788)
Q Consensus 327 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~--~~-~~~~ 400 (788)
+|...|++++|...+++..+-... +.. .....+.++..+..++.. .+++++|+..|++.. .| ++..
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~ 174 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEK--------FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH--------SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHh--------cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence 888889988888887765321000 000 001112233333333333 345777777777664 23 3444
Q ss_pred HHHHHHH---HHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCChhhHHH
Q 035503 401 WNTLLAA---YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR----NGQMNEAKDMFLQMQSLGVQPNLITWTT 473 (788)
Q Consensus 401 ~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 473 (788)
+..+... +...++.++|++.+++.++.. +.+..++..+...+.. .+++++|..++++..... +.+...+..
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~ 252 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHH
Confidence 4444333 334566677777777776653 2334444444444433 355667777777765442 235566677
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 035503 474 LISGLTQNSCGNEAILFFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552 (788)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (788)
+...|...|++++|...+++..+. .|+ ..++..+..++...+....+ .. ...........+
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~ 314 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLE 314 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHh
Confidence 777777777777777777777663 343 33444443333221110000 00 000111111223
Q ss_pred CHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh--HHHHHHH-HhhccCcHHHHHHH
Q 035503 553 NIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI--TFTNILN-ACSHAGLVNEGLEL 626 (788)
Q Consensus 553 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~A~~~ 626 (788)
.++.|...|+... ..+..++..+...|...|++++|++.|++.++....|... .+..+.. ...+.|+.++|+..
T Consensus 315 ~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4567777776543 3455678899999999999999999999988864333221 2233332 24578999999999
Q ss_pred HHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 627 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
|++++ .+.|+........ ..+..++++. . .+.++.+|..++.+|...|++++|+..|+++++++|.
T Consensus 395 y~kal---~i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 395 FIEGV---KINQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHH---HSCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHH---hcCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99887 4566643322222 2233333333 1 2345678999999999999999999999999999999
Q ss_pred CCchHHHHH
Q 035503 705 NPGNYVALS 713 (788)
Q Consensus 705 ~~~~~~~l~ 713 (788)
+|.+..-+|
T Consensus 463 ~p~a~~~~G 471 (472)
T 4g1t_A 463 IPSASSWNG 471 (472)
T ss_dssp ---------
T ss_pred CCcHhhcCC
Confidence 888776655
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=1.3e-15 Score=155.61 Aligned_cols=228 Identities=14% Similarity=0.057 Sum_probs=148.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 035503 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477 (788)
Q Consensus 398 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 477 (788)
...+......+...|++++|..+|+++.... +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3446666777778888888888888877763 3456677777788888888888888888876552 3356777788888
Q ss_pred HHhCCCchHHHHHHHHHHhCCCCCCHH-HHHHH--------------HH-HhhccCchHHHHHHHHHHHHcCCCCChhHH
Q 035503 478 LTQNSCGNEAILFFQEMLETGIKPSTT-TITCA--------------LS-ACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541 (788)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 541 (788)
+...|++++|...++++.+. .|+.. .+..+ .. .+...|++++|...++.+.+..+ .+...+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHH
Confidence 88888888888888888764 33322 22222 11 26667778888888888777766 456666
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccC
Q 035503 542 TSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618 (788)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 618 (788)
..++..|...|++++|...++.+.. .+..+|..++..+...|++++|+..|+++.+.. +.+...+..+..++...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 6666666666666666666654432 334456666666666666666666666655542 223455555555566666
Q ss_pred cHHHHHHHHHhcH
Q 035503 619 LVNEGLELFVGMF 631 (788)
Q Consensus 619 ~~~~A~~~~~~~~ 631 (788)
++++|.+.++++.
T Consensus 255 ~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 255 QYDLAAKQLVRAI 267 (327)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 6666666666554
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=6.4e-16 Score=146.76 Aligned_cols=193 Identities=14% Similarity=0.061 Sum_probs=152.1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 612 (788)
++...+..++..+.+.|++++|+..|+...+ .+...|..+..++...|++++|+..|++.++.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 5566777888888888888888888886544 455678888889999999999999999988864 335677788888
Q ss_pred Hhhcc-----------CcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 035503 613 ACSHA-----------GLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLL 679 (788)
Q Consensus 613 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 679 (788)
++... |++++|+..|+++++ +.|+ ...+..++.+|...|++++|++.++++ ....+...+..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 88888 999999999999874 3565 677889999999999999999999887 2126788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
.++...|++++|+..++++++.+|+++.++..++.++...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999865
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.4e-15 Score=144.09 Aligned_cols=214 Identities=9% Similarity=0.024 Sum_probs=156.5
Q ss_pred HHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC------CC----hhhHHHHHHH
Q 035503 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS------KE----LPVYNAMISG 578 (788)
Q Consensus 509 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~----~~~~~~l~~~ 578 (788)
+...+...|++++|...++.+++.. .+..++..++.+|...|++++|+..++.... ++ ..+|..++.+
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 88 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNA 88 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHH
Confidence 3333444444444444444444433 3344445555555555555555555543332 11 3567778888
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChH
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLD 657 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 657 (788)
+...|++++|+..|+++... .|+. ..+...|++++|...++++.. ..|+ ...+..++..+...|+++
T Consensus 89 ~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 89 YHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHH
Confidence 88888888898888888874 4553 335567889999999998864 3444 567778999999999999
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 658 EALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 658 ~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
+|.+.++++ . .+.+...+..++..+...|++++|+..++++++.+|+++..+..++.+|...|++++|...++++.+.
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999887 2 33457789999999999999999999999999999999999999999999999999999999998775
Q ss_pred C
Q 035503 736 G 736 (788)
Q Consensus 736 ~ 736 (788)
.
T Consensus 237 ~ 237 (258)
T 3uq3_A 237 D 237 (258)
T ss_dssp H
T ss_pred C
Confidence 4
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=3.2e-15 Score=159.02 Aligned_cols=377 Identities=9% Similarity=-0.021 Sum_probs=255.1
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCh---HHHHHHHHhcccCChhH
Q 035503 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI---DNAKQVFNSIILRDVVL 400 (788)
Q Consensus 324 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~ 400 (788)
+...+.+.|++++|.+.|++..+.+ ++..+..|..+|...|+. ++|...|++....++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-----------------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A 71 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-----------------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRA 71 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----------------CCTGGGTCC----------------------------C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHH
Confidence 5667788899999999998864322 223445566667777777 89999999887667777
Q ss_pred HHHHHHHHHHcC-----ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCChhhHH
Q 035503 401 WNTLLAAYADLG-----RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE---AKDMFLQMQSLGVQPNLITWT 472 (788)
Q Consensus 401 ~~~l~~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~g~~~~~~~~~ 472 (788)
+..+...+...+ ++++|+..|++....|.. ..+..|...|...+..++ +...+......| +...+.
T Consensus 72 ~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~ 145 (452)
T 3e4b_A 72 QARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGL 145 (452)
T ss_dssp HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHH
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHH
Confidence 778877666655 678999999999987632 366677777777665443 455555554444 566777
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC---chHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 035503 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA---SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549 (788)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (788)
.+...|...+.++++......+.+.-...++..+..+...+...| +.++|...++...+.++ ++...+..++.+|.
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 888888888866655554333332212233337777888888888 99999999999999998 66666678888886
Q ss_pred Hc----CCHHHHHHHHhhCCCCChhhHHHHHHH-H--HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccC----
Q 035503 550 KC----GNIHQAKRVFDISPSKELPVYNAMISG-Y--AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG---- 618 (788)
Q Consensus 550 ~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---- 618 (788)
.. +++++|...|+.....++.++..|... + ...+++++|+++|++..+.| +...+..|...|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 65 799999999987665566788888887 4 46899999999999998876 5666667777666 55
Q ss_pred -cHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 035503 619 -LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR----CGNLDEALRVILTMPCDPDAHIIGSLLSTCVK----SNETE 689 (788)
Q Consensus 619 -~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 689 (788)
++++|+.+|++.. .-++.....|+.+|.. ..+.++|..+|++.....+......++..|.. .+|.+
T Consensus 301 ~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp CCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHH
T ss_pred CCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHH
Confidence 9999999998774 3457777888888876 44999999999998544455667777777763 46999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHH--HhCCCcHHHHHHHHHHHHC
Q 035503 690 LAEYISEHLLQLEPDNPGNYVALSNAY--AASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 690 ~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 735 (788)
+|...++++.+..+. .....+..+. ...++..+|..+.++....
T Consensus 376 ~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 376 NAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999987654 3444444443 3345667888888776554
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=7.6e-14 Score=138.15 Aligned_cols=257 Identities=9% Similarity=-0.042 Sum_probs=155.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC--HHHHHHHHHHh
Q 035503 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS--TTTITCALSAC 513 (788)
Q Consensus 436 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~ 513 (788)
+......+...|++++|+..|+++.+.. +.+...|..+..++...|++++|+..+++..+....|+ ...+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445556666667777777776665542 22344666666677777777777777777666321111 12355666666
Q ss_pred hccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHH
Q 035503 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALA 590 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~ 590 (788)
...|++++|...++.+.+..+ .+..++..++.+|...|++++|+..|++... .+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777666665 4556777777777777888877777776654 334456666623334457777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHhhccCc---HHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 035503 591 LFKNLQQKGIDPDSITFTNILNACSHAGL---VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667 (788)
Q Consensus 591 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 667 (788)
.|+++.+.. +.+...+..+..++...|+ +++|...|+++.+...-.|+.. -.
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~----------------------- 218 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KD----------------------- 218 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HH-----------------------
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hH-----------------------
Confidence 777766642 2234455555555555555 5555555555543211111110 00
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 668 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
....++..++..|...|++++|+..++++++++|+++.++..+..+....+.
T Consensus 219 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 219 --ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 0124677788889999999999999999999999999888888777655543
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.4e-15 Score=145.74 Aligned_cols=238 Identities=8% Similarity=-0.052 Sum_probs=151.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCC--CCC----HHHH
Q 035503 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI--KPS----TTTI 506 (788)
Q Consensus 433 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~ 506 (788)
...+..+...+...|++++|...|+++.+.. .+...|..+..++...|++++|...+++..+... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777776554 5667777777777777777777777777665210 111 2344
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHH
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 586 (788)
..+...+...|++++|...++.+.+..+. ...+...|+++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------------------~~~~~~~~~~~ 122 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------------------------------ADILTKLRNAE 122 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch----------------------------------------hHHHHHHhHHH
Confidence 44444444555555555555554443331 12344456666
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 587 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
+|+..++++.... +.+...+..+...+...|++++|+..|+++.... +.+...+..++.+|.+.|++++|...++++
T Consensus 123 ~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 123 KELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6666666666532 1234455566666777777777777777765431 223556667777777777777777777766
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 035503 667 -P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE------PDNPGNYVALSNA 715 (788)
Q Consensus 667 -~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 715 (788)
. .+.+...|..++..+...|++++|...++++++++ |++..++..+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 2 23346678888888999999999999999999988 8777776666543
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=2.3e-14 Score=152.31 Aligned_cols=346 Identities=9% Similarity=-0.048 Sum_probs=241.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHhccc-CChhHHHHHHHHHHHcCCh---hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 035503 371 SSIVDMYAKCERIDNAKQVFNSIIL-RDVVLWNTLLAAYADLGRS---GEASRLFYQMQLEGISPNIISWNSVILGFLRN 446 (788)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 446 (788)
..+...+.+.|++++|..+|++... .++..+..+...+...|+. ++|+..|++..+. +...+..+...+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 3477888899999999999988764 3566777777888888888 8999999998854 555566666655555
Q ss_pred C-----CHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCch---HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 035503 447 G-----QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN---EAILFFQEMLETGIKPSTTTITCALSACTDVAS 518 (788)
Q Consensus 447 g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 518 (788)
+ ++++|...|++..+.| +...+..|...|...+..+ ++.+.+......| +......+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 5 7889999999998776 3447788888888776544 4555555555443 34455666677777775
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC---CHHHHHHHHhhCCC---CChhhHHHHHHHHHhC----CCHHHH
Q 035503 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG---NIHQAKRVFDISPS---KELPVYNAMISGYAMH----GLAVEA 588 (788)
Q Consensus 519 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----g~~~~A 588 (788)
++++........+.-...++..+..|+.+|...| +.++|++.|+...+ .+...+..|...|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 5555544443333322344458999999999999 99999999986654 3334446777777554 799999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHH-h--hccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcC-----ChHHHH
Q 035503 589 LALFKNLQQKGIDPDSITFTNILNA-C--SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG-----NLDEAL 660 (788)
Q Consensus 589 ~~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~ 660 (788)
+++|++.. .| +...+..+... + ...+++++|+.+|++..+. + +...+..|+.+|. .| +.++|.
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 99999976 33 45556666665 3 5689999999999998643 3 6777888888887 55 999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----CCCcHHHHHHHHHH
Q 035503 661 RVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISEHLLQLEPDNPGNYVALSNAYAA----SGRWNEVSQVRDIM 732 (788)
Q Consensus 661 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 732 (788)
++|+++. ..++..+..++..|.. ..|+++|...++++.+ +.++..+..|+.+|.. ..+.++|...+++.
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 9999998 7778888889888876 4599999999999987 5678899999999986 56899999999999
Q ss_pred HHCCCc
Q 035503 733 KEKGLR 738 (788)
Q Consensus 733 ~~~~~~ 738 (788)
.+.|..
T Consensus 385 ~~~g~~ 390 (452)
T 3e4b_A 385 KAQDTP 390 (452)
T ss_dssp HTTCCH
T ss_pred HHCCCH
Confidence 988853
No 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=4.8e-16 Score=169.40 Aligned_cols=118 Identities=14% Similarity=0.205 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH---cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHH
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQL---EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 475 (788)
.+||++|++|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 5799999999999999999999987763 4788999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCc-hHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 035503 476 SGLTQNSCG-NEAILFFQEMLETGIKPSTTTITCALSACTDV 516 (788)
Q Consensus 476 ~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (788)
.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 999998875 68889999999999999999998877655443
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=1.5e-14 Score=143.48 Aligned_cols=241 Identities=9% Similarity=-0.087 Sum_probs=176.2
Q ss_pred hCCCchHHHHHHHHHHhCCC--C-CCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHH
Q 035503 480 QNSCGNEAILFFQEMLETGI--K-PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556 (788)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~--~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 556 (788)
..|++++|+..|+++.+... . .+..++..+...+...|++++|...++.+++..+ .+...+..++.+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 34666777777777766421 1 1234566666667777777777777777777766 566777778888888888888
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhh
Q 035503 557 AKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633 (788)
Q Consensus 557 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 633 (788)
|+..|+.+.. .+..+|..++.+|...|++++|+..|+++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888876543 45677888889999999999999999998875 455544444555567779999999999887654
Q ss_pred cCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP-CDPD-----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 634 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.|+......++..+...++.++|.+.+.++- ..|+ ...+..++..+...|++++|+..++++++.+|++..
T Consensus 174 ---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 ---SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp ---SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred ---CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2333333457777888888899999988873 2232 467889999999999999999999999999998755
Q ss_pred hHHHHHHHHHhCCCcHHHHHHH
Q 035503 708 NYVALSNAYAASGRWNEVSQVR 729 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~ 729 (788)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 67888999999998876
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=2.4e-14 Score=147.13 Aligned_cols=244 Identities=10% Similarity=0.058 Sum_probs=170.0
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC-CHHHHHHHHHHhhccCc-hHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 035503 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKP-STTTITCALSACTDVAS-LRNGRAIHGYLIRHDLCLPTPIVTSLVD 546 (788)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 546 (788)
..|..+...+...|++++|+..+++++.. .| +...|..+..++...|+ +++|...++++++.++ .+..+|..++.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 34555555666666666666666666653 33 34455555566666664 6666666666666666 56666667777
Q ss_pred HHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc-cCcHHH
Q 035503 547 MYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH-AGLVNE 622 (788)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~ 622 (788)
++...|++++|+..|+++.. .+..+|..+..++...|++++|+..|+++++.. +-+...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 77777777777777765543 455677777778888888888888888887764 2356777777777777 555466
Q ss_pred H-----HHHHHhcHhhcCCCCC-cchHHHHHHHHhhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-------
Q 035503 623 G-----LELFVGMFSDHQVKPS-MEHFGCVVNLLSRCG--NLDEALRVILTMPCDPD-AHIIGSLLSTCVKSN------- 686 (788)
Q Consensus 623 A-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g------- 686 (788)
| +..|++++. +.|+ ...|..++.+|.+.| +.++|++.+.++...|+ ...+..++..|...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 477777764 3455 567778888888877 58888888887744444 457778888887763
Q ss_pred -C-HHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhC
Q 035503 687 -E-TELAEYISEHL-LQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 687 -~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 719 (788)
+ .++|+.+++++ ++++|.....|..++..+..+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999999999888876654
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=7.3e-14 Score=138.23 Aligned_cols=226 Identities=8% Similarity=-0.061 Sum_probs=167.0
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHH
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KEL----PVYNAMISGYA 580 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~ 580 (788)
......+...|++++|...++.+++..+ .+...+..++.+|...|++++|+..++.... .+. .+|..++..+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3344455556666666666666665555 4455666677777777777777777765443 222 24778888888
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHH
Q 035503 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 581 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 659 (788)
..|++++|++.|++..+.. +.+...+..+...+...|++++|+..|++++ .+.|+ ...+..++..+...+++++|
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888764 3356778888888999999999999998886 34554 56666777344445699999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHHhCCCcHHHH
Q 035503 660 LRVILTM-PCDP-DAHIIGSLLSTCVKSNE---TELAEYISEHLLQLE---PDN-----PGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 660 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~ 726 (788)
.+.++++ ...| +...+..++.++...|+ +++|+..++++++.. |+. ..+|..++.+|...|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998887 2333 46678888888888888 888999999999876 442 258889999999999999999
Q ss_pred HHHHHHHHCCC
Q 035503 727 QVRDIMKEKGL 737 (788)
Q Consensus 727 ~~~~~~~~~~~ 737 (788)
..++++.+..+
T Consensus 242 ~~~~~al~~~p 252 (272)
T 3u4t_A 242 AAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCc
Confidence 99999988764
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=2.7e-13 Score=134.16 Aligned_cols=215 Identities=9% Similarity=-0.053 Sum_probs=138.9
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----
Q 035503 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK----CGNIHQAKRVFDISPS-KELPVYNAMISGYAM---- 581 (788)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~---- 581 (788)
..+...|++++|...++++.+. .+...+..++..|.. .+++++|...|++..+ .+..++..+...|..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCc
Confidence 3333334444444444443331 223344445555555 5555555555554332 244556666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc----cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh----c
Q 035503 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSH----AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR----C 653 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 653 (788)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|+.+|++..+. + +...+..++..|.. .
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSC
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCC
Confidence 677777777777766653 55566666666666 77777777777776542 2 44556666777766 7
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----CCCcHHH
Q 035503 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISEHLLQLEPDNPGNYVALSNAYAA----SGRWNEV 725 (788)
Q Consensus 654 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 725 (788)
+++++|.++++++....+...+..++..|.. .+++++|+..++++++.+| +..+..++.+|.. .+++++|
T Consensus 164 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 164 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHH
Confidence 7777777777776323455677778888877 8888888888888888765 6778888888888 8888888
Q ss_pred HHHHHHHHHCCC
Q 035503 726 SQVRDIMKEKGL 737 (788)
Q Consensus 726 ~~~~~~~~~~~~ 737 (788)
...+++..+.+.
T Consensus 242 ~~~~~~a~~~~~ 253 (273)
T 1ouv_A 242 IENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 888888887764
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=7.6e-14 Score=132.34 Aligned_cols=194 Identities=14% Similarity=0.057 Sum_probs=99.4
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 466 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
++...+..+...+.+.|++++|...|++.++.. +.+...+..+..++...|++++|...++++++..| .+...+..++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 344455555555555555555555555555431 22334445555555555555555555555555555 4455555555
Q ss_pred HHHHHc-----------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 035503 546 DMYAKC-----------GNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611 (788)
Q Consensus 546 ~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 611 (788)
.++... |++++|+..|++..+ .+...|..+..++...|++++|+..|++.++.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 555555 555555555554332 233455556666666666666666666666554 4555555666
Q ss_pred HHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 612 NACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 612 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
.++...|++++|+..|+++++. .|+ ...+..++.++.+.|++++|.+.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666532 233 444555666666666666666655543
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.5e-13 Score=134.32 Aligned_cols=195 Identities=10% Similarity=-0.043 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 616 (788)
.+..++..+...|++++|...|+.+.. .+..+|..++..+...|++++|++.++++.+.. +.+...+..+...+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 344455555555555555555543321 234456666666667777777777777766643 2345566666667777
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEY 693 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 693 (788)
.|++++|+++++++.. .+..|+ ...+..++..|.+.|++++|.+.++++ . .+.+...+..++..+...|++++|+.
T Consensus 118 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777654 123443 455567777777777777777777766 2 22345677777888888888888888
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 694 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.++++++..|+++..+..++.+|...|++++|.++++++.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888888888888888888888888888888888888877654
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=4.1e-14 Score=145.32 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=195.2
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC-HHHHHHHHhhCCC---CChhhHHHHHHHH
Q 035503 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN-IHQAKRVFDISPS---KELPVYNAMISGY 579 (788)
Q Consensus 504 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 579 (788)
..+..+...+...|++++|...++++++..| .+..+|..++.++...|+ +++|+..|+++.. .+..+|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4566777778889999999999999999998 788999999999999997 9999999997754 5667999999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhh-cCChH
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSR-CGNLD 657 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~ 657 (788)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++ +.|+ ...|..++.+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999864 34678899999999999999999999999985 3455 6788899999999 66667
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC--------
Q 035503 658 EA-----LRVILTM-PCDP-DAHIIGSLLSTCVKSN--ETELAEYISEHLLQLEPDNPGNYVALSNAYAASG-------- 720 (788)
Q Consensus 658 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 720 (788)
+| ++.++++ ...| +...|..++.++...| ++++|+..++++ +.+|+++.++..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777776 3344 4678999999998888 689999999998 999999999999999999975
Q ss_pred -CcHHHHHHHHHH-HHCC
Q 035503 721 -RWNEVSQVRDIM-KEKG 736 (788)
Q Consensus 721 -~~~~A~~~~~~~-~~~~ 736 (788)
..++|..+++++ .+..
T Consensus 332 ~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 258999999998 5544
No 49
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.57 E-value=6.9e-15 Score=160.41 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=120.4
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhcc-------cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 035503 368 VVASSIVDMYAKCERIDNAKQVFNSII-------LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440 (788)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 440 (788)
.+|++++++|++.|++++|.++|+.|. .||+++||++|.+|++.|++++|.++|++|.+.|+.||..|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 378999999999999999999997753 6899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCH-HHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC------HHHHHHHHHHh
Q 035503 441 LGFLRNGQM-NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS------TTTITCALSAC 513 (788)
Q Consensus 441 ~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~ 513 (788)
.++++.|+. ++|.++|++|.+.|+.||..+|++++.+..+. ..++..+++ ..++.|+ ..+...+.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHHH
Confidence 999999984 78999999999999999999999998766653 455555555 3345554 33344455555
Q ss_pred hccC
Q 035503 514 TDVA 517 (788)
Q Consensus 514 ~~~~ 517 (788)
...+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5433
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=4.4e-14 Score=137.11 Aligned_cols=144 Identities=16% Similarity=0.051 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
.++..++..+...|++++|++.++++.+.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..++..
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence 344444455555555555555555554432 2234444445555555555555555555554321 1223344455555
Q ss_pred HhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 650 LSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
+.+.|++++|.+.++++ . .+.+...+..++..+...|++++|+..++++++.+|+++.++..++.+.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 55555555555555444 1 1223445555555555555555565556665555555555555544443
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=6.6e-13 Score=131.35 Aligned_cols=224 Identities=10% Similarity=-0.057 Sum_probs=147.1
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 035503 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD----VASLRNGRAIHGYLIRHDLCLPTPIVTSL 544 (788)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 544 (788)
..+..+...+...|++++|+..|++..+ +.+...+..+...+.. .+++++|...++++.+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 3344444444444444445444444444 1122333344444444 455555555555554443 34455556
Q ss_pred HHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhh
Q 035503 545 VDMYAK----CGNIHQAKRVFDISPS-KELPVYNAMISGYAM----HGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615 (788)
Q Consensus 545 ~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 615 (788)
+.+|.. .+++++|+..|++..+ .+..++..+...|.. .+++++|+.+|++..+.+ +...+..+...|.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 666666 6666666666654433 345567777777777 788888888888877754 4556666666777
Q ss_pred c----cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 035503 616 H----AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR----CGNLDEALRVILTMPCDPDAHIIGSLLSTCVK--- 684 (788)
Q Consensus 616 ~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~--- 684 (788)
. .+++++|+.+|++..+. .+...+..++.+|.. .+++++|+++++++....+...+..++..|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 6 78888888888887643 245667788888888 88899998888887322346778888888888
Q ss_pred -cCCHHHHHHHHHHHHhcCCCC
Q 035503 685 -SNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 685 -~g~~~~A~~~~~~~~~~~p~~ 705 (788)
.+++++|+..++++++.+|++
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTCHH
T ss_pred cccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999998874
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=6.8e-14 Score=135.79 Aligned_cols=199 Identities=10% Similarity=0.056 Sum_probs=155.0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 612 (788)
.....+..++..+...|++++|...|+.+.. .+...+..++..+...|++++|+..++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4455677778888888888888888876643 455678889999999999999999999988864 346778888888
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~ 690 (788)
.+...|++++|+..++++.+.. +.+...+..++..+.+.|++++|...++++ . .+.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999997542 335677889999999999999999999987 2 33467789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 691 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
|+..++++++..|+++.++..++.+|...|++++|...++++.+..+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999999999999999988653
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=3.3e-13 Score=129.09 Aligned_cols=197 Identities=11% Similarity=-0.022 Sum_probs=143.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHh
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 614 (788)
...+..++..+...|++++|.+.|+.+.. .+...|..++.++...|++++|++.++++.... +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44555666666666666666666654432 344567777777777788888888887777653 33566677777777
Q ss_pred hcc-CcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 035503 615 SHA-GLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 615 ~~~-g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 690 (788)
... |++++|+..++++.. .+..|+ ...+..++..+...|++++|++.++++ .. +.+...+..++..+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 788 888888888887765 223343 456667788888888888888888776 22 2346678888888888888888
Q ss_pred HHHHHHHHHhcCC-CCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 691 AEYISEHLLQLEP-DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 691 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|...++++++..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 8888888888888 888888888888888888888888888876654
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.1e-13 Score=145.87 Aligned_cols=296 Identities=11% Similarity=0.033 Sum_probs=196.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----hhhHHHHHHHHHhCCCchHHHHHHHHHHhC----CCCC
Q 035503 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN----LITWTTLISGLTQNSCGNEAILFFQEMLET----GIKP 501 (788)
Q Consensus 430 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p 501 (788)
......+......+...|++++|...|+++.+.+. .+ ...|..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34555667778888999999999999999876532 23 356778888999999999999999987642 1122
Q ss_pred C-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC-C----ChhHHHHHHHHHHHcCC--------------------HH
Q 035503 502 S-TTTITCALSACTDVASLRNGRAIHGYLIRHDLC-L----PTPIVTSLVDMYAKCGN--------------------IH 555 (788)
Q Consensus 502 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~--------------------~~ 555 (788)
. ..++..+...+...|++++|...+..+++..+. . ...++..++..|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2 345666777788888888888888887764321 1 13367777888888888 77
Q ss_pred HHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHhhccCcHH
Q 035503 556 QAKRVFDISPS-----KE----LPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPD----SITFTNILNACSHAGLVN 621 (788)
Q Consensus 556 ~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~ 621 (788)
+|...++.... .+ ..++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 77777764322 11 13566777777778888888888777665310 112 125666666777778888
Q ss_pred HHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHH
Q 035503 622 EGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CDPD----AHIIGSLLSTCVKSNETE 689 (788)
Q Consensus 622 ~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~ 689 (788)
+|..+++++.....-.++ ..++..++..|...|++++|.+.++++. ..++ ..++..++..+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888877776543211122 3455577777777777777777776651 1112 345666777777777777
Q ss_pred HHHHHHHHHHhcCCCCC------chHHHHHHHHHhCCCcHHHH
Q 035503 690 LAEYISEHLLQLEPDNP------GNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 690 ~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~ 726 (788)
+|+..+++++++.+... .++..++.+|...|+...+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 77777777777777763 24555666666666655433
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=2.7e-13 Score=125.05 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=135.5
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHH
Q 035503 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCV 646 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 646 (788)
+...|..++..|...|++++|++.|++.++.. +-+...+..+..++.+.|++++|+..++.+... .|+ ...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 34567778888888888888888888877753 235667777778888888888888888887643 343 5566677
Q ss_pred HHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHH
Q 035503 647 VNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 724 (788)
+..+...+++++|.+.+.++ . .+.+...+..++..+...|++++|+..++++++.+|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888888888888888777 2 334567888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCC
Q 035503 725 VSQVRDIMKEKGL 737 (788)
Q Consensus 725 A~~~~~~~~~~~~ 737 (788)
|...+++.++..+
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999988654
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=4.4e-14 Score=149.42 Aligned_cols=271 Identities=11% Similarity=0.005 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh----hhHHHHHHHHHhCCCchHHHHHHHHHHhC----CCCC-CHH
Q 035503 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL----ITWTTLISGLTQNSCGNEAILFFQEMLET----GIKP-STT 504 (788)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~ 504 (788)
..+..+...+...|++++|+..|+++.+.+.. +. ..|..+...|...|++++|...+++..+. +..| ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34455666777888888888888887665221 22 35677777778888888888888776642 1011 123
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHcCC-----CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 035503 505 TITCALSACTDVASLRNGRAIHGYLIRHDL-----CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579 (788)
Q Consensus 505 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 579 (788)
.+..+...+...|++++|...+.++++... .... .++..+...|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------------------------------~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG-------------------------------RALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH-------------------------------HHHHHHHHHH
Confidence 444444555555555555555555444210 0112 2344555555
Q ss_pred HhCCC-----------------HHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCC
Q 035503 580 AMHGL-----------------AVEALALFKNLQQK----GIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637 (788)
Q Consensus 580 ~~~g~-----------------~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 637 (788)
...|+ +++|++.+++..+. +..+ ....+..+...+...|++++|+.+++++.+...-.
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 55555555554331 1111 12345556666777777777777777665432111
Q ss_pred CC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 638 PS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CDP----DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 638 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
++ ...+..++.+|...|++++|.+.++++. ... ...++..++..+...|++++|+..++++++..++.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 1255677777777788887777776651 111 13567778888888889999988888888875543
Q ss_pred ------CchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 706 ------PGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 706 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..++..++.+|...|++++|..++++..+..
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3478888999999999999998888876543
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=6.4e-13 Score=129.72 Aligned_cols=201 Identities=11% Similarity=-0.035 Sum_probs=127.5
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC
Q 035503 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGL 584 (788)
Q Consensus 508 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 584 (788)
.+...+...|++++|...++.+++..+ .+...+..++..|...|++++|.+.|+.+.. .+...|..++..|...|+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH
Confidence 333334444444444444444444433 3344455555555555555555555554322 234456666666777777
Q ss_pred HHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 035503 585 AVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663 (788)
Q Consensus 585 ~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (788)
+++|+++++++...+..| +...+..+...+...|++++|..+++++.+.. +.+...+..++..|.+.|++++|...+
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777765522334 34556666667777777777777777776431 223566667778888888888888888
Q ss_pred HhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 664 LTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 664 ~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
+++ .. +.+...+..++..+...|++++|...++++++..|+++.....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 199 DLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 776 22 3455677788888889999999999999999999997766543
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=1.5e-13 Score=140.78 Aligned_cols=271 Identities=13% Similarity=0.042 Sum_probs=171.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----hhhHHHHHHHHHhCCCchHHHHHHHHHHhC----CCCCC-HHH
Q 035503 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN----LITWTTLISGLTQNSCGNEAILFFQEMLET----GIKPS-TTT 505 (788)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~ 505 (788)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++.... +..|. ...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444556677778888888888777554211 2 245666777777777777777777776542 10111 223
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC----hhhHHHHHHHHHh
Q 035503 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE----LPVYNAMISGYAM 581 (788)
Q Consensus 506 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~ 581 (788)
+..+...+...|++++|...+.++.+..+.. .+ ..++..+...+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISREL------------------------------NDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHh------------------------------cCchHHHHHHHHHHHHHHH
Confidence 3334444444445554444444443321100 11 1245555566666
Q ss_pred CCC--------------------HHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCC
Q 035503 582 HGL--------------------AVEALALFKNLQQK----GIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636 (788)
Q Consensus 582 ~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 636 (788)
.|+ +++|++.+++.... +..+ ....+..+...+...|++++|...++++.+...-
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666 66666666654431 1111 1235666666777888888888888877543211
Q ss_pred CCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 637 KPS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 637 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
.++ ...+..++..+...|++++|.+.++++. ..++ ..++..++..+...|++++|+..++++++..|.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 122 2356678888888889888888887761 1122 456778888899999999999999999987665
Q ss_pred C------CchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 705 N------PGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 705 ~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
. ..++..++.+|.+.|++++|..+++++.+..
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 3 4478899999999999999999999988754
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=5.4e-14 Score=148.43 Aligned_cols=292 Identities=11% Similarity=0.002 Sum_probs=210.6
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-C
Q 035503 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN----IISWNSVILGFLRNGQMNEAKDMFLQMQSL----GVQP-N 467 (788)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~~~-~ 467 (788)
....+......+...|++++|+..|+++..... .+ ..++..+...+...|++++|...|++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 445667778889999999999999999988732 22 356778888899999999999999986332 2111 2
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccCc--------------------hHHH
Q 035503 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGI-KPS----TTTITCALSACTDVAS--------------------LRNG 522 (788)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a 522 (788)
...+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677888899999999999999998876311 112 2367777788888999 9999
Q ss_pred HHHHHHHHHcC-----CCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CCh----hhHHHHHHHHHhCCCHHHH
Q 035503 523 RAIHGYLIRHD-----LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-----KEL----PVYNAMISGYAMHGLAVEA 588 (788)
Q Consensus 523 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~g~~~~A 588 (788)
...+..+++.. ......++..++..|...|++++|...++.... ++. .++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 99988876631 112244678889999999999999999876543 221 2678889999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHH
Q 035503 589 LALFKNLQQKGID-PD----SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 589 ~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 659 (788)
+..+++....... ++ ..++..+...+...|++++|..+++++.....-.++ ...+..++..|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999987653211 11 456777788899999999999999988654222222 45667888999999999999
Q ss_pred HHHHHhCC-----C--C-CCHHHHHHHHHHHHhcCCHH
Q 035503 660 LRVILTMP-----C--D-PDAHIIGSLLSTCVKSNETE 689 (788)
Q Consensus 660 ~~~~~~~~-----~--~-p~~~~~~~l~~~~~~~g~~~ 689 (788)
.+.++++- . . ....++..++..+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99988761 1 1 11234555555555555443
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=1.5e-12 Score=129.04 Aligned_cols=240 Identities=12% Similarity=-0.001 Sum_probs=172.7
Q ss_pred hhcCChHHHHHHHHhcccC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 035503 378 AKCERIDNAKQVFNSIILR-------DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450 (788)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 450 (788)
...|++++|+..|+.+... +..+|..+...+...|++++|...|+++.... +.+..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457889999999887642 35568888889999999999999999998874 346788888999999999999
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 035503 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530 (788)
Q Consensus 451 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 530 (788)
+|...|+++.+.. +.+...|..+..+|...|++++|...|+++.+. .|+.......+..+...|++++|...+..+.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999987652 335788888999999999999999999999873 4555555555555667788899999888888
Q ss_pred HcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 035503 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE-------LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603 (788)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 603 (788)
...+ ++...+ .++..+...++.++|...++.....+ ..+|..++.+|...|++++|+..|+++.+. .|+
T Consensus 172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 7765 333333 36666777777788888887666532 245667777777777777777777777664 342
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHH
Q 035503 604 SITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 604 ~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
.. .....++...|++++|++.+
T Consensus 248 ~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TC--HHHHHHHHHHHHHHHC----
T ss_pred hH--HHHHHHHHHHHHHHhhHHHH
Confidence 21 12233455666666666554
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=1.7e-12 Score=124.14 Aligned_cols=203 Identities=13% Similarity=-0.003 Sum_probs=137.3
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC
Q 035503 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMH 582 (788)
Q Consensus 506 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 582 (788)
+..+...+...|++++|...++.+++..+ .+...+..++..|...|++++|...++.+.. .+..+|..++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 33344444444444444444444444443 3344555556666666666666666654432 3445677777777888
Q ss_pred -CCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHH
Q 035503 583 -GLAVEALALFKNLQQKGIDPD-SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 583 -g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 659 (788)
|++++|+..++++.+.+..|+ ...+..+..++...|++++|+..++++.+. .|+ ...+..++..+.+.|++++|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHH
Confidence 888888888888776322333 456677777788888888888888887653 243 66677888888888888888
Q ss_pred HHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 660 LRVILTM-PC-D-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 660 ~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
.+.++++ .. + .+...+..+...+...|+.+.|...++.+.+.+|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8888877 22 2 3556677777778889999999999999999999987776554
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=8.6e-14 Score=148.98 Aligned_cols=190 Identities=9% Similarity=-0.020 Sum_probs=145.8
Q ss_pred CChhHHHHHHHHHHHcCCH-HHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 035503 536 LPTPIVTSLVDMYAKCGNI-HQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 611 (788)
.+...+..++..|...|++ ++|++.|++..+ .+..+|..+..+|...|++++|++.|++.++. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3444555555555555555 555555554322 33456777777777778888888888887764 46667777777
Q ss_pred HHhhcc---------CcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhc--------CChHHHHHHHHhC-CCCC--
Q 035503 612 NACSHA---------GLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRC--------GNLDEALRVILTM-PCDP-- 670 (788)
Q Consensus 612 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p-- 670 (788)
.++... |++++|+..|+++++. .|+ ...+..++.+|... |++++|++.|+++ ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 778888 8888888888888743 344 66777888888888 8899999888887 3344
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHH
Q 035503 671 --DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 671 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 730 (788)
+...|..++.+|...|++++|+..++++++++|+++.++..++.++...|++++|...++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677899999999999999999999999999999999999999999999999999997543
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=1.7e-10 Score=126.43 Aligned_cols=424 Identities=10% Similarity=0.034 Sum_probs=264.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hhHHHH
Q 035503 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL---LEDAEV 339 (788)
Q Consensus 263 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 339 (788)
...+.+..|++.+..+ +-|..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.|+ .+.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455565666666554 468889999999988888999999999998877 46677788888888888888 899999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCh--------HHHHHHHHhcc------cC-ChhHHHHH
Q 035503 340 VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI--------DNAKQVFNSII------LR-DVVLWNTL 404 (788)
Q Consensus 340 ~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~------~~-~~~~~~~l 404 (788)
+|++.....+. .++..++...+....+.++. +...++|+... .+ +...|...
T Consensus 125 lfeRal~~~~~-------------~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Y 191 (679)
T 4e6h_A 125 VLARCLSKELG-------------NNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEY 191 (679)
T ss_dssp HHHHHTCSSSC-------------CCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred HHHHHHHhcCC-------------CCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 99988765421 25666777766665555443 23345666532 22 34567777
Q ss_pred HHHHH---------HcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-------------CHHHHHHHHHHhh--
Q 035503 405 LAAYA---------DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG-------------QMNEAKDMFLQMQ-- 460 (788)
Q Consensus 405 ~~~~~---------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-------------~~~~A~~~~~~~~-- 460 (788)
+.... ..++.+.+..+|++++......-..+|.....--...+ +++.|...+..+.
T Consensus 192 i~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI 271 (679)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 76543 23456777888888775322222233333222211111 1223444444431
Q ss_pred hCCCC---CC--------------------hhhHHHHHHHHHhCC-------CchHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035503 461 SLGVQ---PN--------------------LITWTTLISGLTQNS-------CGNEAILFFQEMLETGIKPSTTTITCAL 510 (788)
Q Consensus 461 ~~g~~---~~--------------------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (788)
..++. |. ...|...+.---..+ ..+.+..+|++.+.. .+-....|...+
T Consensus 272 ~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya 350 (679)
T 4e6h_A 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMA 350 (679)
T ss_dssp TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHH
T ss_pred HHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 12331 11 123444444333322 123345667777664 344566777777
Q ss_pred HHhhccCchHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------------CC--------
Q 035503 511 SACTDVASLRNGR-AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-------------KE-------- 568 (788)
Q Consensus 511 ~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~-------- 568 (788)
.-+...|+.+.|. .+++.++...| .+..++..++....+.|+++.|.++|+.+.. |.
T Consensus 351 ~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~ 429 (679)
T 4e6h_A 351 NYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQL 429 (679)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhh
Confidence 7777778888886 88888887665 5666777788888888888888888876543 21
Q ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHhhc-cCcHHHHHHHHHhcHhhcCCCCCcch
Q 035503 569 ----LPVYNAMISGYAMHGLAVEALALFKNLQQK-GIDPDSITFTNILNACSH-AGLVNEGLELFVGMFSDHQVKPSMEH 642 (788)
Q Consensus 569 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~ 642 (788)
...|...+....+.|..+.|..+|.+.++. + ......|...+..-.+ .++.+.|..+|+..++.++ -+...
T Consensus 430 ~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~ 506 (679)
T 4e6h_A 430 KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHH
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHH
Confidence 125777777777788888888888887765 2 1122333322222222 3457888888888876532 23344
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTMP-CDP----DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
+...++.....|+.+.|..+|+++- ..| ....|...+..-...|+.+.+..+.+++.+..|+++
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 4577777777888888888888762 223 234677777777788888888888888888888864
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=6.6e-13 Score=140.32 Aligned_cols=277 Identities=12% Similarity=-0.001 Sum_probs=189.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch----hHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCChh
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI----ISWNSVILGFLRNGQMNEAKDMFLQMQSL----GV-QPNLI 469 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~ 469 (788)
..+..+...+...|++++|+..|+++++.... +. ..+..+...|...|++++|...|++..+. +. +....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34566778899999999999999999987322 22 47888899999999999999999998442 11 12356
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCC----CCC-CHHHHHHHHHHhhccCc-----------------hHHHHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETG----IKP-STTTITCALSACTDVAS-----------------LRNGRAIHG 527 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~ 527 (788)
.+..+...|...|++++|...+++..... -.| ...++..+...+...|+ +++|...+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78888999999999999999999987631 112 23456667777778888 666666665
Q ss_pred HHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC-
Q 035503 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPD- 603 (788)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~- 603 (788)
++.+. ...... ....++..+...|...|++++|+..+++..+... .++
T Consensus 208 ~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 208 ENLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 54432 111111 0112455566666666666666666666554210 011
Q ss_pred ---HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC-
Q 035503 604 ---SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CDPD- 671 (788)
Q Consensus 604 ---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~- 671 (788)
...+..+...+...|++++|+..++++.....-..+ ...+..++.+|...|++++|.++++++. ..++
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 125566666777777777777777776543211111 3455677888888888888888887761 1111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 672 ---AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 672 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
..++..++..|...|++++|...+++++++.+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 346778888899999999999999999988766
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=9.6e-13 Score=146.17 Aligned_cols=162 Identities=17% Similarity=0.219 Sum_probs=138.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHH
Q 035503 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVV 647 (788)
Q Consensus 569 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 647 (788)
..+|+.|..+|.+.|++++|++.|++.++.. +-+...+..+..+|.+.|++++|+..|+++++ +.|+ ...|..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 3568888888889999999999999888753 23567788888889999999999999998874 4565 67888999
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHH
Q 035503 648 NLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 725 (788)
.+|.+.|++++|++.|+++ ...| +...|..++.++...|++++|+..|+++++++|+++.++..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999887 3344 4678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 035503 726 SQVRDIMKE 734 (788)
Q Consensus 726 ~~~~~~~~~ 734 (788)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=7.4e-10 Score=121.43 Aligned_cols=403 Identities=10% Similarity=0.050 Sum_probs=251.6
Q ss_pred CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC---hhHHHHHHHHHHHhCC-CCchhHHH
Q 035503 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA---LDEGKQAHAVAVINGM-ELDNVLGS 322 (788)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~~ 322 (788)
|...|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ .+.+..+|+..+.... .|+...|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6778888888888888899999999998876 45566667777777777777 8888888888887652 47788888
Q ss_pred HHHHHHHhcCCh----hHHHHHHHhcCCCCchhHHHHHHHHHHcCC---CchhHHHHHHHHHhh---------cCChHHH
Q 035503 323 SIINFYSKVGLL----EDAEVVFSRMVERDIVTWNLLIASYVQSGQ---SDVVVASSIVDMYAK---------CERIDNA 386 (788)
Q Consensus 323 ~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~~~~~~l~~~~~~---------~~~~~~A 386 (788)
..+....+.++. +++.....+ .|. .+....|. .+..++...+..... .++++.+
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~-------~FE---rAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~ 213 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQ-------AFQ---VVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYI 213 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHH-------HHH---HHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHH-------HHH---HHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHH
Confidence 887777766665 333333222 122 22222232 234567666665432 3456778
Q ss_pred HHHHHhccc-C--C-hhHHHHHHHHHHHcCC-------------hhHHHHHHHHHHHc--CCC---Cc------------
Q 035503 387 KQVFNSIIL-R--D-VVLWNTLLAAYADLGR-------------SGEASRLFYQMQLE--GIS---PN------------ 432 (788)
Q Consensus 387 ~~~~~~~~~-~--~-~~~~~~l~~~~~~~g~-------------~~~a~~~~~~m~~~--~~~---~~------------ 432 (788)
..+|+.... | + ..+|......-...+. ++.|...+.++... ++. |.
T Consensus 214 R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~ 293 (679)
T 4e6h_A 214 RKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPK 293 (679)
T ss_dssp HHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCC
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCC
Confidence 888887763 2 1 1234333222212111 22233344443321 221 11
Q ss_pred --------hhHHHHHHHHHHhcC-------CHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHH-HHHHHHHh
Q 035503 433 --------IISWNSVILGFLRNG-------QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI-LFFQEMLE 496 (788)
Q Consensus 433 --------~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 496 (788)
...|...+.---..+ ..+.+..+|+++... .+-+...|-..+..+...|+.++|. .+|++...
T Consensus 294 ~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~ 372 (679)
T 4e6h_A 294 PNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372 (679)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 123333333322222 123455677777554 3336777888888888888888886 88888876
Q ss_pred CCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCC---------CC------------ChhHHHHHHHHHHHcCCHH
Q 035503 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL---------CL------------PTPIVTSLVDMYAKCGNIH 555 (788)
Q Consensus 497 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~g~~~ 555 (788)
. .+.+...+...+......|+++.|..+++.++...+ .| ...+|...+....+.|..+
T Consensus 373 ~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~ 451 (679)
T 4e6h_A 373 C-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA 451 (679)
T ss_dssp H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred h-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence 3 344455566677777788889999999988876420 02 2346777778888888899
Q ss_pred HHHHHHhhCCCC----ChhhHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 556 QAKRVFDISPSK----ELPVYNAMISGYAMH-GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 556 ~A~~~~~~~~~~----~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
.|..+|....+. ....|...+....+. ++.+.|.++|+..++. .+-+...+...+.-....|+.+.|..+|+++
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999998766432 223444333333344 4588899999888776 3334555556666667788899999999888
Q ss_pred HhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 631 FSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 631 ~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
+.. .|+ ...+...+..-.+.|+.+.+.++.+++
T Consensus 531 l~~---~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 531 IDK---ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp TTT---SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHh---cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 643 231 345566677777889998888888887
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=4.5e-12 Score=132.28 Aligned_cols=236 Identities=11% Similarity=-0.036 Sum_probs=116.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 035503 474 LISGLTQNSCGNEAILFFQEMLETGI-KPS----TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548 (788)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (788)
....+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+.++++........
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------- 179 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------- 179 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT---------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc---------
Confidence 34455666777777777776654200 111 1234444444555555555555554444321110000
Q ss_pred HHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHhhccCcHHHH
Q 035503 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPD----SITFTNILNACSHAGLVNEG 623 (788)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~A 623 (788)
......+++.+..+|...|++++|++.|++..+... .++ ..++..+..+|...|++++|
T Consensus 180 ----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 180 ----------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 000012344445555555555555555555443210 011 12444555555556666666
Q ss_pred HHHHHhcHhhc---CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC------CCCCH-HHHHHHHHHHHhcCC---HH
Q 035503 624 LELFVGMFSDH---QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP------CDPDA-HIIGSLLSTCVKSNE---TE 689 (788)
Q Consensus 624 ~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~~-~~~~~l~~~~~~~g~---~~ 689 (788)
+..++++.... +..|. ..++..++..|.+.|++++|.+.++++- ..|.. ..+..+...+...|+ ++
T Consensus 244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 323 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQ 323 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 65555554311 11122 3444556666666666666666655541 01111 123445555666666 56
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 690 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
+|+..+++. ...|.....+..++.+|...|++++|..++++..+.
T Consensus 324 ~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 324 GFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 666666655 233334556777777788888888888777777543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=2.3e-12 Score=134.53 Aligned_cols=234 Identities=7% Similarity=-0.041 Sum_probs=161.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CC-----CHh
Q 035503 541 VTSLVDMYAKCGNIHQAKRVFDISPS-----KE----LPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DP-----DSI 605 (788)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p-----~~~ 605 (788)
+...+..+...|++++|+..|+.... ++ ..+|..+...|...|++++|+..+++..+... .+ ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 33456667777777777777765433 22 24677888889999999999999888765311 11 135
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC------CC-CC-HH
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP------CD-PD-AH 673 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-p~-~~ 673 (788)
++..+..+|...|++++|+..|++++....-.++ ..++..++.+|...|++++|++.++++- .. |. ..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 6788888999999999999999998754322222 2467799999999999999999998871 22 33 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCchHHHHHHHHHhCCC---cHHHHHHHHHHHHCCCccCCceeE
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLE-----PDNPGNYVALSNAYAASGR---WNEVSQVRDIMKEKGLRKNPGCSW 745 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~ 745 (788)
++..++..+...|++++|+..+++++++. |.....+..++.+|...|+ +++|..++++. +..+.....+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 78899999999999999999999999874 3334446789999999999 77888777764 2111110000
Q ss_pred EEECCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 035503 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781 (788)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 781 (788)
. .........+++.++...+....++.+++..
T Consensus 343 ~----~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 343 I----DVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp H----HHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred H----HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 0 0001112233466677777766666655543
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=1.4e-12 Score=133.30 Aligned_cols=277 Identities=12% Similarity=0.012 Sum_probs=183.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-Chh
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN----IISWNSVILGFLRNGQMNEAKDMFLQMQSL----GVQP-NLI 469 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~ 469 (788)
..+......+...|++++|+..|+++..... .+ ...+..+...+...|++++|...+++..+. +..| ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455667788999999999999999998742 22 367788899999999999999999987432 2111 256
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccCc--------------------hHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGI-KPS----TTTITCALSACTDVAS--------------------LRNGRA 524 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~ 524 (788)
.+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788888999999999999999999875311 112 1245555556666666 555555
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-C
Q 035503 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQKGI-D 601 (788)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~ 601 (788)
.++.+... +..... ....++..+...+...|++++|+..+++..+... .
T Consensus 165 ~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 165 LYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55444331 111110 0112455566666667777777777766554210 0
Q ss_pred CC----HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CC
Q 035503 602 PD----SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CD 669 (788)
Q Consensus 602 p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 669 (788)
++ ..++..+...+...|++++|..++++......-.++ ...+..++..|...|++++|...++++. ..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 225666666777788888888888776543221122 3455677888888888888888887761 11
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 670 PD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 670 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
++ ..++..++..+...|++++|...+++++++.+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 11 346778888999999999999999999988765
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=3.3e-12 Score=117.70 Aligned_cols=167 Identities=11% Similarity=0.042 Sum_probs=132.1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 612 (788)
.+..+|..++..|...|++++|++.|++..+ .+..+|..++.+|...|++++|+..+++..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3456777788888888888888888876543 455678888888888888888888888887753 335566666777
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETE 689 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~ 689 (788)
.+...++++.|...+.++... .|+ ...+..++.+|.+.|++++|++.++++ .. +.+..+|..++.++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 788889999999998888643 344 667778899999999999999998887 23 345678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 035503 690 LAEYISEHLLQLEPDNP 706 (788)
Q Consensus 690 ~A~~~~~~~~~~~p~~~ 706 (788)
+|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999853
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=2.8e-11 Score=121.72 Aligned_cols=218 Identities=7% Similarity=-0.005 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHhh-------ccCch-------HHHHHHHHHHHH-cCCCCChhHHHHHHHHHH
Q 035503 485 NEAILFFQEMLETGIKPSTTTITCALSACT-------DVASL-------RNGRAIHGYLIR-HDLCLPTPIVTSLVDMYA 549 (788)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 549 (788)
++|...|++.+.. .+-+...|..++..+. ..|++ ++|..+++++++ ..| .+..+|..++..+.
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 4566666666653 1333445555554443 23554 677777777777 344 55667777777777
Q ss_pred HcCCHHHHHHHHhhCCC--C-Chh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHh-hccCcHHHHH
Q 035503 550 KCGNIHQAKRVFDISPS--K-ELP-VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC-SHAGLVNEGL 624 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~ 624 (788)
+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++.++.+ +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777775543 2 233 67777777777778888888887777643 22333443332221 2357788888
Q ss_pred HHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035503 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP----CDP--DAHIIGSLLSTCVKSNETELAEYISEHL 698 (788)
Q Consensus 625 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (788)
.+|+++++.. +.+...+..++..+.+.|+.++|..+|+++- .+| ....|..++..+...|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8887776532 1235566677777777778888777777762 243 2456777777777778888888888888
Q ss_pred HhcCCCCCc
Q 035503 699 LQLEPDNPG 707 (788)
Q Consensus 699 ~~~~p~~~~ 707 (788)
++..|+++.
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 887777543
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=3.3e-11 Score=121.19 Aligned_cols=213 Identities=9% Similarity=0.019 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHH-------cCCH-------HHHHHHHhhCCC----CChhhHHHHHHHHHh
Q 035503 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK-------CGNI-------HQAKRVFDISPS----KELPVYNAMISGYAM 581 (788)
Q Consensus 520 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 581 (788)
+.|..+|+++++..| .++.+|..++..+.. .|++ ++|..+|++... .+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 678889999999887 788899998888764 5885 999999986543 345689999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC-Hh-HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHh-hcCChH
Q 035503 582 HGLAVEALALFKNLQQKGIDPD-SI-TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLS-RCGNLD 657 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~ 657 (788)
.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++ ..|+ ...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999884 564 33 788888889999999999999999974 3343 444544443322 379999
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 658 EALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL---EPD-NPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 658 ~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
+|.++|+++ . .+.+...|..++..+...|++++|+.+|+++++. .|+ ....|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988 2 2345678999999999999999999999999995 554 677899999999999999999999999
Q ss_pred HHHCCCc
Q 035503 732 MKEKGLR 738 (788)
Q Consensus 732 ~~~~~~~ 738 (788)
+.+..+.
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 9887653
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=2.5e-10 Score=118.52 Aligned_cols=265 Identities=11% Similarity=-0.050 Sum_probs=131.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCChh----hHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCCHHHHHHHHHHhh
Q 035503 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLI----TWTTLISGLTQNSCGNEAILFFQEMLETGI-KPSTTTITCALSACT 514 (788)
Q Consensus 440 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~ 514 (788)
...+...|++++|...+++........+.. .++.+...+...|++++|...+++...... .++...
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------- 91 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY--------- 91 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH---------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH---------
Confidence 344555666666666666654432111111 334444555566666666666666543110 011100
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------C----ChhhHHHHHHHHHhCC
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-------K----ELPVYNAMISGYAMHG 583 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~g 583 (788)
....+..++..+...|++++|...++.... + ....+..+...+...|
T Consensus 92 ----------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (373)
T 1hz4_A 92 ----------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 149 (373)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc
Confidence 011223344444555555555544432211 1 0123444555666666
Q ss_pred CHHHHHHHHHHHHHcCCC--C--CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-----HHHHHHhhcC
Q 035503 584 LAVEALALFKNLQQKGID--P--DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-----CVVNLLSRCG 654 (788)
Q Consensus 584 ~~~~A~~~~~~m~~~~~~--p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g 654 (788)
++++|...+++....... + ...++..+...+...|++++|..++++......-......+. ..+..+...|
T Consensus 150 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 150 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 666666666665543211 1 123344455556666666666666666543211111111111 1223355666
Q ss_pred ChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhCCCc
Q 035503 655 NLDEALRVILTMP-CDPD-----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN------PGNYVALSNAYAASGRW 722 (788)
Q Consensus 655 ~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~ 722 (788)
++++|...+++.. ..|. ...+..++..+...|++++|...++++++..+.. ...+..++.++...|+.
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 6776666666652 1111 1234555666666677777777777666543321 13555666777777777
Q ss_pred HHHHHHHHHHHHC
Q 035503 723 NEVSQVRDIMKEK 735 (788)
Q Consensus 723 ~~A~~~~~~~~~~ 735 (788)
++|...+++....
T Consensus 310 ~~A~~~l~~al~~ 322 (373)
T 1hz4_A 310 SDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666543
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=1.3e-11 Score=118.15 Aligned_cols=164 Identities=10% Similarity=-0.030 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVN 648 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 648 (788)
..|...+..+...|++++|+..|++.++....++...+..+..++...|++++|+..|+++++ ..|+ ...+..++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 344444445555555555555555544443223444444444445555555555555555442 2233 334445555
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHH
Q 035503 649 LLSRCGNLDEALRVILTM-PCDP-DA-------HIIGSLLSTCVKSNETELAEYISEHLLQLEPD--NPGNYVALSNAYA 717 (788)
Q Consensus 649 ~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~ 717 (788)
+|...|++++|++.++++ ...| +. ..|..++..+...|++++|+..++++++.+|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555555444 1111 12 23444555555555556666666665555555 5555555555555
Q ss_pred hCCCc---------------------------HHHHHHHHHHHHCC
Q 035503 718 ASGRW---------------------------NEVSQVRDIMKEKG 736 (788)
Q Consensus 718 ~~g~~---------------------------~~A~~~~~~~~~~~ 736 (788)
..|+. ++|...+++..+..
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 55555 99999999988765
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=7.6e-12 Score=133.82 Aligned_cols=180 Identities=9% Similarity=-0.031 Sum_probs=156.9
Q ss_pred HHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHh
Q 035503 554 IHQAKRVFDISP---SKELPVYNAMISGYAMHGLA-VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629 (788)
Q Consensus 554 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 629 (788)
+++++..++... ..+...|..+..++...|++ ++|++.|++.++.. +.+...+..+..+|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555666665433 34667899999999999999 99999999998864 33578899999999999999999999999
Q ss_pred cHhhcCCCCCcchHHHHHHHHhhc---------CChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc--------CCHHH
Q 035503 630 MFSDHQVKPSMEHFGCVVNLLSRC---------GNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKS--------NETEL 690 (788)
Q Consensus 630 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~--------g~~~~ 690 (788)
++ .+.|+...+..++.+|... |++++|++.++++ .. +.+...|..++.+|... |++++
T Consensus 163 al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 AL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 97 5668888888999999999 9999999999998 23 34577899999999988 99999
Q ss_pred HHHHHHHHHhcCC---CCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 691 AEYISEHLLQLEP---DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 691 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
|+..++++++++| +++..|..++.+|...|++++|...++++.+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999 9999999999999999999999999999988653
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=9.5e-13 Score=133.03 Aligned_cols=237 Identities=12% Similarity=0.074 Sum_probs=122.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcC-------
Q 035503 468 LITWTTLISGLTQNSCGNEAILFFQEMLET-------GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD------- 533 (788)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 533 (788)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++.+++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777777888888888888888877652 112223344555555566666666666665555431
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHhH
Q 035503 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK------GIDP-DSIT 606 (788)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~ 606 (788)
...... ++..+...|...|++++|+..++++.+. +..| ....
T Consensus 107 ~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 011222 3444555555555555555555554432 1111 1233
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhc-----CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC----------CCC
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDH-----QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP----------CDP 670 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p 670 (788)
+..+...+...|++++|+.+++++.... +..|. ...+..++.+|.+.|++++|.+.++++. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4445555556666666666665554321 00111 2344455666666666666666655541 001
Q ss_pred C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 671 D-------AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 671 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
. ...+......+...+.+.+|...++++....|..+.++..++.+|.+.|++++|..++++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 1112222233344556666777777777777888888888888888888888888888887654
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=2.7e-11 Score=115.92 Aligned_cols=206 Identities=10% Similarity=0.002 Sum_probs=157.3
Q ss_pred CCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 035503 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMIS 577 (788)
Q Consensus 501 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 577 (788)
.|+..+......+...|++++|...++.+++..+.++...+..++.++...|++++|+..|+...+ .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999988766777777799999999999999999986654 34467888999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC---cchHHHHH
Q 035503 578 GYAMHGLAVEALALFKNLQQKGIDPDS-------ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS---MEHFGCVV 647 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~ 647 (788)
+|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|+..|++++ .+.|+ ...+..++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 9999999999999999988853 2234 446777778888999999999999887 45665 46667888
Q ss_pred HHHhhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 648 NLLSRCGNL--DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 648 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
.+|...|+. ++|..+. ..+...+... .....+.+++|+..++++++++|+++.+...+..+..
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888766653 3322211 1122223222 2345577899999999999999999988888877654
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=2.1e-11 Score=112.33 Aligned_cols=160 Identities=14% Similarity=0.028 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 616 (788)
.+..++..+...|++++|...++.+.. .+..++..++..+...|++++|+..++++.+.. +.+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~--------- 79 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVA--------- 79 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH---------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH---------
Confidence 445555666666666666666655543 233345555555555555555555555554432 1233334
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|+..
T Consensus 80 ---------------------------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 80 ---------------------------TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp ---------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------------HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 444444555555555555544441 223456677788888888899999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 695 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++++++..|+++..+..++.+|...|++++|...++++.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999888899999999999999999999998887654
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=4.8e-11 Score=124.17 Aligned_cols=221 Identities=10% Similarity=-0.010 Sum_probs=142.2
Q ss_pred hhccCchHHHHHHHHHHHHcCCC-----CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC-----hhhHHHHHH
Q 035503 513 CTDVASLRNGRAIHGYLIRHDLC-----LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-----KE-----LPVYNAMIS 577 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~~ 577 (788)
+...|++++|...++++.+.... ....++..++..|...|++++|...++.... .+ ..+++.++.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 44556666666666665543110 1233566677777777777777666654321 11 235677778
Q ss_pred HHHhCCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC--CCCC-cchHHHHHHH
Q 035503 578 GYAMHGLAVEALALFKNLQQK----GIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQ--VKPS-MEHFGCVVNL 649 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~p~-~~~~~~l~~~ 649 (788)
+|...|++++|++.|++..+. +-.+ ...++..+..+|...|++++|+..++++..... ..|. ..++..++..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 888888888888888776652 1111 124566677778888888888888887765211 1222 4556688888
Q ss_pred HhhcCChHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 650 LSRCGNLDEALRVILTM----PC--DPDA-HIIGSLLSTCVKSNE---TELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~----~~--~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
|.+.|++++|.++++++ .. .|.. ..+..+...+...++ +++|+..+++. ...|+....+..++.+|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 88888888888888776 11 2222 344555556667777 77777777662 23344456777889999999
Q ss_pred CCcHHHHHHHHHHHH
Q 035503 720 GRWNEVSQVRDIMKE 734 (788)
Q Consensus 720 g~~~~A~~~~~~~~~ 734 (788)
|++++|..+++++.+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998888765
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=2.8e-12 Score=129.51 Aligned_cols=242 Identities=10% Similarity=0.040 Sum_probs=151.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhC------C
Q 035503 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSL-------GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET------G 498 (788)
Q Consensus 432 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 498 (788)
+..++..+...+...|++++|..+|+++.+. ..+.....+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888899999999999999999998652 22334577888999999999999999999998863 1
Q ss_pred CCC-CHHHHHHHHHHhhccCchHHHHHHHHHHHHcC-----C--CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh
Q 035503 499 IKP-STTTITCALSACTDVASLRNGRAIHGYLIRHD-----L--CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570 (788)
Q Consensus 499 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 570 (788)
-.| ....+..+...+...|++++|...++.+++.. . .... .
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-------------------------------~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA-------------------------------K 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH-------------------------------H
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH-------------------------------H
Confidence 122 24567777888888999999999988877641 1 0112 2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc------CCC
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQK------GIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDH------QVK 637 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~ 637 (788)
++..+...+...|++++|+++++++.+. +..| ...++..+..++...|++++|..+++++.... ...
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3444555555555566665555555442 1122 12345555566666677777766666665321 111
Q ss_pred CCc-chHH------HHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 638 PSM-EHFG------CVVNLLSRCGNLDEALRVILTMP-CDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 638 p~~-~~~~------~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+.. ..+. .+...+...+.+.+|...+.... ..| ...++..++.+|...|++++|+..+++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 211 1111 22233344555555666666653 223 3457888999999999999999999999998875
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=2.4e-10 Score=118.88 Aligned_cols=226 Identities=10% Similarity=-0.025 Sum_probs=151.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC------CChhHHHH
Q 035503 475 ISGLTQNSCGNEAILFFQEMLETGI-KPS----TTTITCALSACTDVASLRNGRAIHGYLIRHDLC------LPTPIVTS 543 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 543 (788)
...+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+.++++.... ....++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344556666666666666554210 111 234445555566666666666666665552111 11335667
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHhHHHH
Q 035503 544 LVDMYAKCGNIHQAKRVFDISPS-----KE----LPVYNAMISGYAMHGLAVEALALFKNLQQ-----KGIDPDSITFTN 609 (788)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 609 (788)
++.+|...|++++|.+.|++..+ .+ ..++..++.+|...|++++|++.|++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 77777788888887777765432 12 13677788888899999999999988776 32 223567777
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCCC---cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPS---MEHFGCVVNLLSRCGN---LDEALRVILTMPCDPDA-HIIGSLLSTC 682 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~ 682 (788)
+..++.+.|++++|..++++......-.++ ...+..+...+...|+ +.+|+.++++....|+. ..+..++..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 888899999999999999988765333222 2344567777788888 89999999987544443 4567788889
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 035503 683 VKSNETELAEYISEHLLQL 701 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~ 701 (788)
...|++++|...++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=1.9e-10 Score=105.81 Aligned_cols=169 Identities=11% Similarity=0.056 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 035503 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGY 579 (788)
Q Consensus 503 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 579 (788)
...+..+...+...|++++|...++.+.+..+ .+...+..++..+...|++++|...++.+.+ .+...|..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34566777888999999999999999988776 6788899999999999999999999987643 4567888899999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 659 (788)
...|++++|++.++++.... +.+...+..+...+...|++++|...++++.+. .|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~--------------------- 141 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RP--------------------- 141 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Cc---------------------
Confidence 99999999999999988763 345666777777777888888888887777543 12
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 660 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.+...+..++..+...|++++|...++++++.+|+++.
T Consensus 142 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 142 ----------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred ----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 23445666677777777777777778877777777544
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=3.6e-10 Score=117.36 Aligned_cols=299 Identities=10% Similarity=-0.018 Sum_probs=178.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchh----HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCh----hhH
Q 035503 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNII----SWNSVILGFLRNGQMNEAKDMFLQMQSLGV-QPNL----ITW 471 (788)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~~----~~~ 471 (788)
.......+...|++++|...+++........+.. +++.+...+...|++++|...+++...... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4445566778999999999999998864222222 456677888999999999999998744211 1122 235
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 035503 472 TTLISGLTQNSCGNEAILFFQEMLET----GIK--PS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544 (788)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 544 (788)
..+...+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+++.+.........
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 171 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ----- 171 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH-----
Confidence 66777888999999999999887652 111 21 1233334445555566666666655555433211100
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-hHHH-----HHHHHhhccC
Q 035503 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS-ITFT-----NILNACSHAG 618 (788)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~-----~ll~~~~~~g 618 (788)
....++..+...+...|++++|...+++.......++. ..+. ..+..+...|
T Consensus 172 ----------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 172 ----------------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp ----------------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 01123555666666677777777777666543111111 1111 1223356777
Q ss_pred cHHHHHHHHHhcHhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhc
Q 035503 619 LVNEGLELFVGMFSDHQVKPS-----MEHFGCVVNLLSRCGNLDEALRVILTMP-------CDPDA-HIIGSLLSTCVKS 685 (788)
Q Consensus 619 ~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~ 685 (788)
++++|..++++.... .|. ...+..++..+...|++++|.+.++++. ..++. ..+..+..++...
T Consensus 230 ~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 230 DKAAAANWLRHTAKP---EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp CHHHHHHHHHHSCCC---CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC---CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 888888777776532 221 1134566777778888888887777651 11122 2555667778888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 686 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|+.++|...+++++...+... ....+...| +....+++.+....
T Consensus 307 g~~~~A~~~l~~al~~~~~~g-----~~~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 307 GRKSDAQRVLLDALKLANRTG-----FISHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC-----CCHHHHTTH--HHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhcccc-----HHHHHHHcc--HHHHHHHHHHHhCC
Confidence 889999888888887655421 112333444 45555666655544
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=2.7e-10 Score=111.51 Aligned_cols=205 Identities=12% Similarity=0.019 Sum_probs=144.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC-HhHH
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--K-E---LPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPD-SITF 607 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~-~~~~ 607 (788)
.+...+..++..+.+.|++++|+..|+.+.. | + ..++..++.+|...|++++|+..|++.++... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4566777778888888888888888876654 2 2 34677778888888888888888888777531 112 3345
Q ss_pred HHHHHHhhc--------cCcHHHHHHHHHhcHhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 035503 608 TNILNACSH--------AGLVNEGLELFVGMFSDHQVKPSM-EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678 (788)
Q Consensus 608 ~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 678 (788)
..+..++.. .|++++|+..|+++++.+ |+. .....+.......++. ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 556666766 788888888888877543 432 2221211111111111 1125677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhC----------CCcHHHHHHHHHHHHCCCccCCceeE
Q 035503 679 LSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALSNAYAAS----------GRWNEVSQVRDIMKEKGLRKNPGCSW 745 (788)
Q Consensus 679 ~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~ 745 (788)
+..|...|++++|+..++++++..|++ +.++..++.+|... |++++|...++++++..+ +
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----~--- 227 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----D--- 227 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----T---
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----C---
Confidence 888999999999999999999999995 45899999999977 899999999999987642 2
Q ss_pred EEECCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 035503 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781 (788)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 781 (788)
+|.+......+..+...+++
T Consensus 228 ----------------~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 228 ----------------SPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------CTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------ChHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777665
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=7.7e-11 Score=117.36 Aligned_cols=162 Identities=12% Similarity=-0.023 Sum_probs=107.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CC--CHhHHHHHHHHhhcc-CcHHHHHHHHHhcHhhcCCCCC----c
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGI---DP--DSITFTNILNACSHA-GLVNEGLELFVGMFSDHQVKPS----M 640 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~----~ 640 (788)
+|+.+..+|...|++++|+..|++.++... .+ -..++..+...|... |++++|+..|++++....-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 566666677777777777777766554210 11 134566777778885 8888888888887653211111 3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-PCDP---DA-----HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN--- 708 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--- 708 (788)
.++..++..|.+.|++++|++.++++ ...| .. ..+..++.++...|++++|+..++++++++|+....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 45678888899999999999998887 1222 21 256778888899999999999999999999986553
Q ss_pred --HHHHHHHHH--hCCCcHHHHHHHHHH
Q 035503 709 --YVALSNAYA--ASGRWNEVSQVRDIM 732 (788)
Q Consensus 709 --~~~l~~~~~--~~g~~~~A~~~~~~~ 732 (788)
+..++..|. ..+++++|...|+++
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 445566664 457788888888654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=1.9e-10 Score=114.54 Aligned_cols=251 Identities=11% Similarity=0.002 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHH
Q 035503 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNG---QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492 (788)
Q Consensus 416 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 492 (788)
+|.+++++..+. .++....+ .+.+.+ ++++|...|++. ...|...|++++|...|.
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-----KLFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-----hhcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 466677776665 23222222 222332 477777777665 335667788888888777
Q ss_pred HHHhC----CCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCC
Q 035503 493 EMLET----GIKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567 (788)
Q Consensus 493 ~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 567 (788)
+.... |-.++ ..++..+..++...|++++|...++++++..+ ..|+...+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~---------------~~g~~~~~---------- 116 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT---------------HRGQFRRG---------- 116 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HTTCHHHH----------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------HcCCHHHH----------
Confidence 76542 11111 23445555555555555555555555444211 11111111
Q ss_pred ChhhHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCC-C----HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc
Q 035503 568 ELPVYNAMISGYAMH-GLAVEALALFKNLQQKGIDP-D----SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p-~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 641 (788)
..+|+.+..+|... |++++|+..|++.++..... + ..++..+...+...|++++|+..|+++.....-.+...
T Consensus 117 -a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 117 -ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp -HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred -HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 12466677777775 88888888777766531100 1 24566677778888888888888887764321111111
Q ss_pred -----hHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 642 -----HFGCVVNLLSRCGNLDEALRVILTM-PCDPDA------HIIGSLLSTCV--KSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 642 -----~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.+..++.++...|++++|+..+++. ...|+. ..+..++.++. ..+++++|+..|++++.++|....
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 4566777788888888888888777 333432 12344555553 446788888888888888887544
Q ss_pred hHHHHH
Q 035503 708 NYVALS 713 (788)
Q Consensus 708 ~~~~l~ 713 (788)
.+..+-
T Consensus 276 ~~~~~k 281 (292)
T 1qqe_A 276 ILNKIK 281 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.19 E-value=7.3e-11 Score=131.11 Aligned_cols=163 Identities=16% Similarity=0.176 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHh
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 614 (788)
..+++.|+.+|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|++.|++.++.. +-+...|..+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45666677777777777777777765443 345677777777888888888888888877753 22456777777788
Q ss_pred hccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 035503 615 SHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELA 691 (788)
Q Consensus 615 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 691 (788)
...|++++|++.|+++++ +.|+ ...+..++.+|.+.|++++|++.|+++ ...| +...+..++.++...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 888888888888887764 3454 567778888888888888888888776 3344 356788888888888888888
Q ss_pred HHHHHHHHhcCCC
Q 035503 692 EYISEHLLQLEPD 704 (788)
Q Consensus 692 ~~~~~~~~~~~p~ 704 (788)
++.+++++++.|+
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 8888888876544
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=1.2e-09 Score=104.06 Aligned_cols=182 Identities=14% Similarity=0.053 Sum_probs=127.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh----H
Q 035503 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KE----LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI----T 606 (788)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~ 606 (788)
+...+..++..+.+.|++++|+..|+.+.. |+ ..++..++.+|...|++++|+..|+++++.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 455677788888999999999999987653 22 2467778889999999999999999988753 4321 3
Q ss_pred HHHHHHHhhc------------------cCcHHHHHHHHHhcHhhcCCCCCcc-hHHHHHHHHhhcCChHHHHHHHHhCC
Q 035503 607 FTNILNACSH------------------AGLVNEGLELFVGMFSDHQVKPSME-HFGCVVNLLSRCGNLDEALRVILTMP 667 (788)
Q Consensus 607 ~~~ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 667 (788)
+..+..++.. .|++++|+..|+++++. .|+.. ....... .+......
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~------- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH-------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH-------
Confidence 4444444443 46677777777777643 34422 1111110 00000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP---GNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 668 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
......++..+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...++.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01223567778999999999999999999999976 67999999999999999999999999887654
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=8.4e-11 Score=116.66 Aligned_cols=165 Identities=13% Similarity=0.093 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc-----CCCC
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQK------GIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDH-----QVKP 638 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~p 638 (788)
+|..+..+|...|++++|++.|++.... .-.| ...++..+...+...|++++|+.+++++.... +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4455555555555665655555554442 1012 23445555555666666666666666654321 0012
Q ss_pred C-cchHHHHHHHHhhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcC------CHHHHHHHHHHHHh
Q 035503 639 S-MEHFGCVVNLLSRCGNLDEALRVILTMP----------CDPD-AHIIGSLLSTCVKSN------ETELAEYISEHLLQ 700 (788)
Q Consensus 639 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~ 700 (788)
. ...+..++.+|.+.|++++|.++++++. ..+. ...|..+...+...+ .+..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 1 3344566666666666666666665541 1111 123333333333222 23444444444444
Q ss_pred cCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 701 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
..|..+.++..++.+|...|++++|..++++.++.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556677888888888888888888888887653
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.14 E-value=2e-10 Score=128.60 Aligned_cols=189 Identities=12% Similarity=0.020 Sum_probs=108.9
Q ss_pred hccCchHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC
Q 035503 514 TDVASLRNGRAIHGYLI--------RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMH 582 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 582 (788)
...|++++|...+++++ +..+ .+...+..++.+|...|++++|+..|++..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677777777777777 4444 4556666667777777777777776665543 3445666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHH
Q 035503 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 583 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
|++++|++.|++.++.. +.+...+..+..++.+.|++++ +..|+++++ +.|+ ...+..++.+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777666666643 2234555666666666666666 666666653 2343 4555566666666666666666
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCch
Q 035503 662 VILTM-PCDPD-AHIIGSLLSTCVKSNE-----TELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 662 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~ 708 (788)
.++++ ...|+ ...+..++.++...++ .+...++.+...++.++++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 66666 23444 3455555555544444 233344444444444444443
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=8.6e-10 Score=109.27 Aligned_cols=171 Identities=10% Similarity=-0.014 Sum_probs=136.7
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC
Q 035503 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639 (788)
Q Consensus 560 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 639 (788)
.+......+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.. ..|+
T Consensus 108 ~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~ 183 (287)
T 3qou_A 108 LLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQD 183 (287)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCS
T ss_pred HHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcc
Confidence 3333333444567778888889999999999999988863 33567788888889999999999999998864 3465
Q ss_pred cchHH-HHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHH
Q 035503 640 MEHFG-CVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN--PGNYVALSN 714 (788)
Q Consensus 640 ~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~ 714 (788)
..... .....+.+.|+.++|.+.++++ . .+.+...+..++..+...|++++|+..++++++.+|++ ..++..|+.
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 44333 4444567788888888888777 2 33456789999999999999999999999999999997 889999999
Q ss_pred HHHhCCCcHHHHHHHHHHHH
Q 035503 715 AYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 715 ~~~~~g~~~~A~~~~~~~~~ 734 (788)
+|...|+.++|...+++.+.
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999988654
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=7e-10 Score=108.55 Aligned_cols=205 Identities=11% Similarity=0.013 Sum_probs=149.1
Q ss_pred CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C---hhh
Q 035503 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP--TPIVTSLVDMYAKCGNIHQAKRVFDISPS--K-E---LPV 571 (788)
Q Consensus 500 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~ 571 (788)
+.+...+......+...|++++|...++.+++..|... ..++..++.+|.+.|++++|+..|+...+ | + ..+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34566777888889999999999999999999887322 67889999999999999999999987654 2 1 246
Q ss_pred HHHHHHHHHh--------CCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcch
Q 035503 572 YNAMISGYAM--------HGLAVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642 (788)
Q Consensus 572 ~~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 642 (788)
+..+..++.. .|++++|+..|+++++. .|+. .....+.. +..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH-----HHHH
Confidence 7788889988 99999999999999886 3443 22222111 1111000 0112
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM-PCDPD----AHIIGSLLSTCVKS----------NETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
+..++..|.+.|++++|+..++++ ...|+ ...+..++.+|... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 456778888888888888888776 22232 34677777777755 8999999999999999999864
Q ss_pred ---hHHHHHHHHHhCCCcHHH
Q 035503 708 ---NYVALSNAYAASGRWNEV 725 (788)
Q Consensus 708 ---~~~~l~~~~~~~g~~~~A 725 (788)
+...+..++.+.|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 455566666666655443
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.13 E-value=3.2e-11 Score=106.33 Aligned_cols=139 Identities=13% Similarity=0.051 Sum_probs=86.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCC
Q 035503 578 GYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGN 655 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 655 (788)
.+...|++++|+..+++.... .| +...+..+...|.+.|++++|++.|+++++ +.|+ ...+..++.+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 344445555566555554332 22 223344455556666666666666666553 2343 4555566666666666
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 656 LDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEY-ISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 656 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
+++|+..|+++ ...| +...|..++..|...|++++|.. .++++++++|+++.+|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666666665 2233 45677778888888888766554 4588888888888888888888888775
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=8.2e-10 Score=100.48 Aligned_cols=158 Identities=11% Similarity=0.045 Sum_probs=99.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH-Hh
Q 035503 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL-LS 651 (788)
Q Consensus 573 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 651 (788)
..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++... .|+...+..+... +.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 344445555555555555555544431 123444555555555666666666666555422 2322222111111 11
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhCCCcHHHHH
Q 035503 652 RCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN--PGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 652 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
..+...+|+..++++ ...| +...+..++.++...|++++|+..++++++.+|+. +..+..++.+|...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222223455566555 2234 46788899999999999999999999999999985 5599999999999999999999
Q ss_pred HHHHHHH
Q 035503 728 VRDIMKE 734 (788)
Q Consensus 728 ~~~~~~~ 734 (788)
.|++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=9.4e-09 Score=99.56 Aligned_cols=245 Identities=9% Similarity=0.013 Sum_probs=124.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCch
Q 035503 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519 (788)
Q Consensus 440 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 519 (788)
+.-..-.|++..++.-...+.. ......-..+.++|...|++.... .-.|....+..+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc--
Confidence 3445567888877773333221 112223333456777777766311 1223322332222 222222
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCC-----ChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK-----ELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 520 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
+...+++.+..+. ++......++.++...|++++|++++...... +...+..++..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~~-~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDKQ-NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTSC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555555443 34444456667777777777777777655322 234555666677777777777777777
Q ss_pred HHHcCCCC-----CHhHHHHHHHH--hhccC--cHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 035503 595 LQQKGIDP-----DSITFTNILNA--CSHAG--LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665 (788)
Q Consensus 595 m~~~~~~p-----~~~~~~~ll~~--~~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (788)
|.+. .| +..+...+..+ ....| ++++|..+|+++... .|+......+..++.+.|++++|.+.++.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7653 44 23444444444 22223 666777777766432 24322222233355566666666666554
Q ss_pred CCC------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 666 MPC------------DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 666 ~~~------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
+.. +.++.+.-+++......|+ .|.+.++++.+..|+++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 311 1223344344444444454 55566666666666655443
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=2.7e-08 Score=96.37 Aligned_cols=175 Identities=9% Similarity=-0.037 Sum_probs=100.8
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHh
Q 035503 557 AKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 557 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 632 (788)
|+..|++... ++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555655442 333444566666677777777777777665543212 334455555567777777777777777643
Q ss_pred hcCCCC-----CcchHHHHHHH--HhhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 035503 633 DHQVKP-----SMEHFGCVVNL--LSRCG--NLDEALRVILTMP-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL- 701 (788)
Q Consensus 633 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 701 (788)
..| +..+...|+.+ ....| +..+|..+|+++. ..|+...-..+..++...|++++|+..++.+++.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 345 23344444433 33333 6777777777762 3344222222333566667777777777766654
Q ss_pred ---------CCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 702 ---------EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 702 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+|+++.++.+++.+....|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 36667777666666666665 6667777766654
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=2.6e-10 Score=100.35 Aligned_cols=124 Identities=10% Similarity=-0.041 Sum_probs=104.3
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSN 686 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g 686 (788)
|...+...|++++|+..++... ...|+ ...+..++.+|.+.|++++|++.|+++ ... .+..+|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556778899999999998775 44454 455668999999999999999999998 333 45678999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHH-HHHHHHCC
Q 035503 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV-RDIMKEKG 736 (788)
Q Consensus 687 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~ 736 (788)
++++|+..|+++++++|+++.++..++.+|.+.|++++|... ++++++..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999887765 58877754
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=6.1e-09 Score=97.80 Aligned_cols=162 Identities=7% Similarity=-0.052 Sum_probs=129.6
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccC----cHHHHHHHHHhcHhhcCCCCCcch
Q 035503 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG----LVNEGLELFVGMFSDHQVKPSMEH 642 (788)
Q Consensus 567 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~~~~~~~p~~~~ 642 (788)
.++.++..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|+++|++.... -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 455667777777777888888888888887754 55666667777777 6 888999999888542 35667
Q ss_pred HHHHHHHHhh----cCChHHHHHHHHhCCC-CCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHH
Q 035503 643 FGCVVNLLSR----CGNLDEALRVILTMPC-DPD---AHIIGSLLSTCVK----SNETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 643 ~~~l~~~~~~----~g~~~~A~~~~~~~~~-~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
+..|+.+|.. .+++++|.++++++.. .|. +..+..|+..|.. .+++++|+..++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7788888877 7899999999988843 332 6788889999887 78999999999999998 77788999
Q ss_pred HHHHHHHhC-C-----CcHHHHHHHHHHHHCCC
Q 035503 711 ALSNAYAAS-G-----RWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 711 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 737 (788)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999864 3 89999999999988874
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.05 E-value=2.5e-10 Score=99.87 Aligned_cols=103 Identities=9% Similarity=0.005 Sum_probs=92.2
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 635 QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 635 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
.+.|+ ...+..++..+.+.|++++|+..|+++ ... .+...|..++.+|...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 55665 567778999999999999999999988 333 457789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 712 LSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
++.+|...|++++|...|+++++...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988653
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=3.3e-09 Score=91.33 Aligned_cols=124 Identities=21% Similarity=0.197 Sum_probs=77.7
Q ss_pred HHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH
Q 035503 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNET 688 (788)
Q Consensus 611 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 688 (788)
...+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++. .+.+...+..++..+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 333444444444444444443210 1123333344444444455555554444441 123445677777788888888
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++|+..++++++..|+++..+..++.+|...|++++|...++++.+..
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 888888888888888888888888888888999999988888887654
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.03 E-value=2.6e-09 Score=100.09 Aligned_cols=128 Identities=9% Similarity=0.007 Sum_probs=98.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHh
Q 035503 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLS 651 (788)
Q Consensus 573 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 651 (788)
+.+..+|...|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+++++ +.|+ ...+..++.+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 348889999999999999999988864 33677888888899999999999999999875 3465 677888888887
Q ss_pred hcCC--hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 652 RCGN--LDEALRVILTMPC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 652 ~~g~--~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
..|+ .+++...++.... .|....+...+.++...|++++|+..++++++++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6654 4455666666632 222334556677778889999999999999999998
No 102
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=3e-09 Score=105.33 Aligned_cols=163 Identities=14% Similarity=0.097 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC-------C----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS-------K----ELPVYNAMISGYAMHGLAVEALALFKNLQQK------GIDP 602 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p 602 (788)
++..++.+|...|++++|...|++... + ...++..+...|...|++++|+..++++.+. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 444455555555555555555543321 1 1235667777777788888888887776654 1122
Q ss_pred -CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc------CCCCC-cchHHHHHHHHhhcC------ChHHHHHHHHhCCC
Q 035503 603 -DSITFTNILNACSHAGLVNEGLELFVGMFSDH------QVKPS-MEHFGCVVNLLSRCG------NLDEALRVILTMPC 668 (788)
Q Consensus 603 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~ 668 (788)
...++..+..++...|++++|..+++++.+.. ...+. ...+..+...+...+ .+.++...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 23566777778888888888888888776531 12233 333334444433322 34445555555532
Q ss_pred -CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 035503 669 -DPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLE 702 (788)
Q Consensus 669 -~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 702 (788)
.|+ ..++..++..|...|++++|+..++++++..
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 233 3578889999999999999999999998753
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=2.4e-09 Score=100.31 Aligned_cols=159 Identities=10% Similarity=0.022 Sum_probs=117.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHH----------------HHHHhhccCcHHHHHHHHHhcHhhcC
Q 035503 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPD-SITFTN----------------ILNACSHAGLVNEGLELFVGMFSDHQ 635 (788)
Q Consensus 573 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~----------------ll~~~~~~g~~~~A~~~~~~~~~~~~ 635 (788)
...+..+...|++++|+..|++.++. .|+ ...+.. +..++...|++++|+..|+++++.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 33445566677777777777776664 343 344444 788899999999999999999853
Q ss_pred CCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHH
Q 035503 636 VKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSN--ETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 636 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
.|+ ...+..++.+|...|++++|+..|+++ ...| +...|..++.+|...| +.+.+...+++++...|. ...++
T Consensus 84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 454 678889999999999999999999998 3344 5678889998886665 445667777777654333 33567
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 711 ALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 711 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.++.++...|++++|...|+++++..+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 789999999999999999999887653
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.99 E-value=3.7e-09 Score=116.43 Aligned_cols=159 Identities=8% Similarity=-0.057 Sum_probs=123.7
Q ss_pred cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 551 CGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 551 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
.|++++|++.|++..+ .+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999987765 445789999999999999999999999988853 335678888888999999999999999
Q ss_pred HhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 035503 628 VGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKS---NETELAEYISEHLLQL 701 (788)
Q Consensus 628 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 701 (788)
+++.+. .|+ ...+..++.+|.+.|++++|.+.++++ ... .+...+..++..+... |++++|+..++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999754 354 678889999999999999999999987 233 3567888999999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 035503 702 EPDNPGNYVALS 713 (788)
Q Consensus 702 ~p~~~~~~~~l~ 713 (788)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999999888877
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=9.1e-09 Score=115.16 Aligned_cols=182 Identities=13% Similarity=-0.004 Sum_probs=134.7
Q ss_pred HhCCCchHHHHHHHHHH--------hCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 035503 479 TQNSCGNEAILFFQEML--------ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (788)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++++++.++ .+...+..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67788888888888887 32 133456677777788888888888888888888877 677788888888888
Q ss_pred cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 551 CGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 551 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
.|++++|++.|++..+ .+...|..+..++...|++++ ++.|++.++.+ +.+...+..+..++.+.|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888876543 455678888888888888888 88888887753 335667777888888888888888888
Q ss_pred HhcHhhcCCCCC-cchHHHHHHHHhhcCC--------hHHHHHHHHhCC
Q 035503 628 VGMFSDHQVKPS-MEHFGCVVNLLSRCGN--------LDEALRVILTMP 667 (788)
Q Consensus 628 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 667 (788)
+++. .+.|+ ...+..++.++...|+ +++|.+.+..+.
T Consensus 558 ~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 DEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred Hhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 8776 55666 4566677777766444 666666666664
No 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=1.9e-09 Score=94.53 Aligned_cols=103 Identities=12% Similarity=0.036 Sum_probs=89.1
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 635 QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 635 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
.+.|+ ...+..++..+.+.|++++|+..|+++ . .+.+...|..++.+|...|++++|+..++++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44454 456667888899999999999999887 2 33467789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 712 LSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
++.+|...|++++|...|++.++..+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999887653
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=2.5e-09 Score=90.58 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=65.9
Q ss_pred CCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 636 VKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 636 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
+.|+ ...+...+..|.+.|++++|++.|+++ .. +.+...|..++.++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3344 344555666666666666666666665 22 23455666677777777777777777777777777777777777
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 713 SNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 713 ~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+.+|...|++++|...|++.++..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 777777777777777777766643
No 108
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=1.3e-08 Score=87.46 Aligned_cols=132 Identities=18% Similarity=0.174 Sum_probs=102.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
+|..++..+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++++.... +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677778888888888888888887754 3356667777777888888888888888886531 23456677888888
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 651 SRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
...|++++|.+.++++. .+.+...+..++..+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 88889999888888772 23356778888999999999999999999999988863
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.94 E-value=1.4e-08 Score=111.68 Aligned_cols=145 Identities=12% Similarity=-0.036 Sum_probs=70.9
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHH
Q 035503 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFK 593 (788)
Q Consensus 517 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~ 593 (788)
|++++|...++++++..+ .+...+..++..|...|++++|.+.|++..+ .+...|..+..+|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455566666666655554 4455556666666666666666666654433 233455556666666666666666666
Q ss_pred HHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhc---CChHHHHHHHHhC
Q 035503 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRC---GNLDEALRVILTM 666 (788)
Q Consensus 594 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 666 (788)
+..+.. +.+...+..+..++...|++++|++.|+++.+. .|+ ...+..++.++... |+.++|.+.++++
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 655542 223445555555566666666666666655432 232 44455556666665 6666666665554
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=1.3e-08 Score=102.10 Aligned_cols=219 Identities=12% Similarity=0.030 Sum_probs=156.7
Q ss_pred CCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 035503 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 560 (788)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567888999888877631 111 0 11146777777776654 5678888999999888
Q ss_pred HhhCCC-----CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCC--HhHHHHHHHHhhccCcHHHHHHH
Q 035503 561 FDISPS-----KE----LPVYNAMISGYAMHGLAVEALALFKNLQQKGI---DPD--SITFTNILNACSHAGLVNEGLEL 626 (788)
Q Consensus 561 ~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~g~~~~A~~~ 626 (788)
|.+... .+ ..+|+.+..+|...|++++|+..|++.++.-. .+. ..++..+...|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 875443 12 23788899999999999999999998765311 121 3567778888888 999999999
Q ss_pred HHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 035503 627 FVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CDPD----AHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 627 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
|++++....-..+ ..++..++.+|.+.|++++|++.++++. ..++ ...+..++..+...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998754321111 3567789999999999999999998871 1122 23566777778888999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHHHhCCCcHHHHH
Q 035503 695 SEHLLQLEPDNPGN-----YVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 695 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 727 (788)
+++++ ++|+.... ...++..+ ..|+.+.+..
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99985543 44455555 5677666655
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.90 E-value=1.2e-07 Score=93.09 Aligned_cols=226 Identities=8% Similarity=-0.008 Sum_probs=126.2
Q ss_pred CCchHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccC--chHHHHHHHHHHHHcCCCCChhHHHHHHHHH----HHc---
Q 035503 482 SCGNEAILFFQEMLETGIKPST-TTITCALSACTDVA--SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY----AKC--- 551 (788)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 551 (788)
...++|+..+++++. +.|+. ..++.-...+...+ .++++...++.++...| .+..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcccc
Confidence 334578888888777 44544 34555555566666 77777777777777776 4444555444444 444
Q ss_pred CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc------H
Q 035503 552 GNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAV--EALALFKNLQQKGIDPDSITFTNILNACSHAGL------V 620 (788)
Q Consensus 552 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------~ 620 (788)
+++++++.+++.+.+ ++..+|+.-..++...|+++ ++++.++++++.+ .-|...|......+...|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 566666666665543 44456665555566666665 6666666666654 2345555555555555554 5
Q ss_pred HHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 035503 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE-ALRVILTMP-C----DPDAHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 621 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
+++++.+++++.. -+-+...+..+..++.+.|+..+ +.++..++- . ...+..+..++.++.+.|+.++|+++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 6666666665532 11234455555555555555333 333444431 1 12344555555555555666666666
Q ss_pred HHHHHh-cCCCCCchHHHHH
Q 035503 695 SEHLLQ-LEPDNPGNYVALS 713 (788)
Q Consensus 695 ~~~~~~-~~p~~~~~~~~l~ 713 (788)
++.+.+ .+|.....|...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 666554 4665555554443
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=2.8e-08 Score=93.56 Aligned_cols=129 Identities=15% Similarity=-0.030 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|+..|+++.... +.+...+..++.+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 3455666777777777777777765 34566677777777777777777777777776431 22345666777777
Q ss_pred hhcCChHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 651 SRCGNLDEALRVILTM-PCDP-----------------DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
...|++++|++.++++ ...| ....+..++.++...|++++|+..++++++.+|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 7777777777777665 1111 12456666677777777777777777777777764
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.89 E-value=9.7e-09 Score=89.38 Aligned_cols=102 Identities=11% Similarity=-0.022 Sum_probs=88.5
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 635 QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 635 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
.+.|+ ...+..++..+.+.|++++|+..|+++ . .+.+...|..++.++...|++++|+..++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 44454 455667888889999999999999887 2 33467789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 712 LSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++.+|...|++++|...++++++..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988764
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=4.8e-07 Score=88.77 Aligned_cols=212 Identities=13% Similarity=0.102 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC--CHHHHHHHHhhCCC---CChhhHHHHHHHH----HhC---CCHH
Q 035503 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG--NIHQAKRVFDISPS---KELPVYNAMISGY----AMH---GLAV 586 (788)
Q Consensus 519 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---g~~~ 586 (788)
.++|..+.+.++..+| ....+|+.-..++...| +++++++.++.+.. .+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3578888888898888 67778888888888888 99999999987654 4556777654444 445 7889
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHH--HHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCC------hHH
Q 035503 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVN--EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN------LDE 658 (788)
Q Consensus 587 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 658 (788)
+++++++++.+.. +-+..+|..-..++.+.|.++ ++++.++++++.. .-+...+.....++.+.|+ +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999998864 346777877777777888887 8999999988542 2345666666666666666 888
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 659 ALRVILTM--PCDPDAHIIGSLLSTCVKSNET-ELAEYISEHLLQLE---PDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 659 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
++++++++ ..+.|...|+.+...+...|+. +....+++++++++ |.++.++..++.+|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99888877 2345677898888888887764 44667888888776 778889999999999999999999999998
Q ss_pred HH
Q 035503 733 KE 734 (788)
Q Consensus 733 ~~ 734 (788)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.87 E-value=1.5e-08 Score=85.79 Aligned_cols=109 Identities=16% Similarity=0.039 Sum_probs=83.6
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLST 681 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 681 (788)
..+......+.+.|++++|++.|+++++. .| +...+..++.+|.+.|++++|++.++++ .. +.+...|..++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 44556666777777777777777776642 34 3566667777777777777777777776 22 3356789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
+...|++++|+..++++++++|+++.++..|+.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999998887653
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=5.5e-08 Score=92.35 Aligned_cols=186 Identities=13% Similarity=0.012 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-h---hhHH
Q 035503 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP--TPIVTSLVDMYAKCGNIHQAKRVFDISPS--KE-L---PVYN 573 (788)
Q Consensus 502 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~ 573 (788)
+...+......+...|++++|...++.+++..|... ...+..++.+|.+.|++++|+..|+.+.+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677788999999999999999999876433 46788899999999999999999987654 22 2 2455
Q ss_pred HHHHHHHh------------------CCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHhcHhhc
Q 035503 574 AMISGYAM------------------HGLAVEALALFKNLQQKGIDPDSI-TFTNILNACSHAGLVNEGLELFVGMFSDH 634 (788)
Q Consensus 574 ~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 634 (788)
.+..++.. .|++++|+..|+++++. .|+.. ....... .+ .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l~------~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----LV------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----HH------HHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----HH------HHHHHH----
Confidence 56666654 67899999999999885 45543 2221111 00 011111
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 035503 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA----HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 635 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
......++..|.+.|++++|+..++++ ...|+. ..+..++.++...|+.++|+..++++....|++...
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 012235678899999999999999887 223332 468888999999999999999999999999987553
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=6.8e-08 Score=95.53 Aligned_cols=161 Identities=10% Similarity=0.027 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhH-HHHH
Q 035503 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVY-NAMI 576 (788)
Q Consensus 500 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~ 576 (788)
+.+...+..+...+...|++++|...++++++..| .+...+..++.+|...|++++|...++.+.. |+.... ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 33445566666777788888888888888888777 5677788888888888888888888887765 333222 2223
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC---cchHHHHHHHHhhc
Q 035503 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS---MEHFGCVVNLLSRC 653 (788)
Q Consensus 577 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~ 653 (788)
..+...++.++|+..+++..+.. +.+...+..+..++...|++++|+..|+++++. .|+ ...+..++.+|...
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHc
Confidence 33555666666777777766653 334566666666777777777777777777643 233 33455556666666
Q ss_pred CChHHHHHHHHh
Q 035503 654 GNLDEALRVILT 665 (788)
Q Consensus 654 g~~~~A~~~~~~ 665 (788)
|+.++|...+++
T Consensus 269 g~~~~a~~~~r~ 280 (287)
T 3qou_A 269 GTGDALASXYRR 280 (287)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCcHHHHHHH
Confidence 665555555443
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=2.7e-07 Score=91.71 Aligned_cols=161 Identities=7% Similarity=-0.064 Sum_probs=118.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCH----hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHH
Q 035503 574 AMISGYAMHGLAVEALALFKNLQQKGI-DPDS----ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFG 644 (788)
Q Consensus 574 ~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~ 644 (788)
..+..+...|++++|+.++++...... .|+. ..+..+...+...|++++|+..|+++.....-.++ ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667788888888888888776421 1221 12334555677778888898888888753222222 22577
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchH
Q 035503 645 CVVNLLSRCGNLDEALRVILTMP-------CD-PD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN------PGNY 709 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 709 (788)
.++..|...|++++|+.+++++- .. +. ..++..++..|...|++++|+..+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88888889999998888887762 11 11 2478889999999999999999999999876543 5689
Q ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHH
Q 035503 710 VALSNAYAASGR-WNEVSQVRDIMKE 734 (788)
Q Consensus 710 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 734 (788)
..+|.+|.+.|+ +++|...+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 5999999998864
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=1.1e-07 Score=94.63 Aligned_cols=163 Identities=6% Similarity=-0.079 Sum_probs=116.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-----hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cch
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDS-----ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEH 642 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~ 642 (788)
+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|+..++++.....-..+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 444566677788888888888777664322111 12333445567778888888888877643211112 346
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCc
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTMP----CDPD-----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD------NPG 707 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~ 707 (788)
+..++..|...|++++|+.+++++. ..|+ ..++..++..|...|++++|+..+++++++.++ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 6788888888999998888887761 1122 257888999999999999999999999987543 156
Q ss_pred hHHHHHHHHHhCCCcHHH-HHHHHHHHH
Q 035503 708 NYVALSNAYAASGRWNEV-SQVRDIMKE 734 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 734 (788)
+|..++.+|.+.|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 789999999999999999 787888754
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=4.6e-08 Score=88.73 Aligned_cols=156 Identities=12% Similarity=0.041 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-hh
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA-CS 615 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~ 615 (788)
....++..+...|++++|+..|+.... .+...|..+..++...|++++|+..|++.... .|+......+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 455667777788888888888887765 44567778888888888888888888886654 3343332222111 12
Q ss_pred ccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHH
Q 035503 616 HAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD---AHIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 616 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~ 690 (788)
..+...+|+..++++++ ..|+ ...+..++.++...|++++|...++++ ...|+ ...+..++.++...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22223346777877764 3454 677778888888888888888888876 34443 4578888888888899999
Q ss_pred HHHHHHHHHh
Q 035503 691 AEYISEHLLQ 700 (788)
Q Consensus 691 A~~~~~~~~~ 700 (788)
|+..|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888764
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=3.9e-08 Score=98.47 Aligned_cols=197 Identities=7% Similarity=-0.042 Sum_probs=151.7
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
..|++++|..+++++.+.... . .+...+++++|...|.. .+..|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 457888899999888775431 1 01115788888887764 46678899999999999998
Q ss_pred HHHcCC---CC--CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHh
Q 035503 595 LQQKGI---DP--DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILT 665 (788)
Q Consensus 595 m~~~~~---~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (788)
..+... .+ -..+|..+..+|...|++++|+..|++.+..+.-..+ ..++..++.+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 766321 11 1346788888899999999999999988654321112 3567789999988 999999999988
Q ss_pred CC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 666 MP----CDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP------GNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 666 ~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
+- ...+ ..++..++..+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 71 1111 35788899999999999999999999999877654 3677888899999999999999999
Q ss_pred HH
Q 035503 732 MK 733 (788)
Q Consensus 732 ~~ 733 (788)
.+
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.78 E-value=3.9e-06 Score=89.35 Aligned_cols=201 Identities=8% Similarity=-0.045 Sum_probs=128.1
Q ss_pred HHHHHHHHhcc---cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 035503 384 DNAKQVFNSII---LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460 (788)
Q Consensus 384 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (788)
+.+..+|+++. ..+...|...+..+.+.|+.++|..+|++.... |+...... .|....+.++. ++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHH
Confidence 34556666664 335677888888888899999999999999887 44332211 22222111111 22221
Q ss_pred hCC---------CCC---ChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc-cCchHHHHHHHH
Q 035503 461 SLG---------VQP---NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD-VASLRNGRAIHG 527 (788)
Q Consensus 461 ~~g---------~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~ 527 (788)
+.- ..+ ....|...+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 001 1244666666666778888899999888 32 12344444332222222 336888999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
.+++..+ .++..+...++...+.|+.+.|..+|+.+.+ ....|...+..-...|+.+.+.++++++..
T Consensus 345 ~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888765 4455666778888888999999999988843 466788888777778888888888887664
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=1.5e-07 Score=88.19 Aligned_cols=173 Identities=8% Similarity=-0.123 Sum_probs=127.9
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhCC----CHHHHHHHHHHHH
Q 035503 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-KELPVYNAMISGYAMHG----LAVEALALFKNLQ 596 (788)
Q Consensus 522 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~ 596 (788)
|...++++.+. .++..+..++.+|...+++++|+..|++..+ .++.++..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 44555555554 3456677777777777888888888876543 455677777777777 6 8899999999887
Q ss_pred HcCCCCCHhHHHHHHHHhhc----cCcHHHHHHHHHhcHhhcCCCCC---cchHHHHHHHHhh----cCChHHHHHHHHh
Q 035503 597 QKGIDPDSITFTNILNACSH----AGLVNEGLELFVGMFSDHQVKPS---MEHFGCVVNLLSR----CGNLDEALRVILT 665 (788)
Q Consensus 597 ~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 665 (788)
+.| +...+..|...|.. .+++++|+++|++.. ...|. +..+..|+.+|.. .++.++|..+|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 56667777777776 789999999999886 33443 6778888888888 7889999999988
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCCC
Q 035503 666 MP-CDPDAHIIGSLLSTCVKS-N-----ETELAEYISEHLLQLEPD 704 (788)
Q Consensus 666 ~~-~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p~ 704 (788)
+. ..++...+..++..|... | +.++|+..++++.+....
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 83 335566778888887643 3 899999999999887543
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=3e-08 Score=94.73 Aligned_cols=194 Identities=10% Similarity=-0.081 Sum_probs=119.8
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHH-------HHHHHHcCCHHHHHHHHhhCCCCCh------------------
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSL-------VDMYAKCGNIHQAKRVFDISPSKEL------------------ 569 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~------------------ 569 (788)
..++...|.+.|.++++.+| .....|..+ ...+.+.++..+++..+.......+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 45677777777777777776 556666655 4555555555555555544333111
Q ss_pred ------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC--cc
Q 035503 570 ------PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS--ME 641 (788)
Q Consensus 570 ------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~ 641 (788)
..+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 12234556677777777777777776543 344334444444677777888887777655321 0 111 23
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CC--CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTMP-CD--PD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
.+..++.++.+.|++++|+..|++.. .. |. ...+...+.++...|+.++|...|++++..+|+ +.++..|.+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 55677777777888888887777762 11 32 335666777777888888888888888888887 666555543
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=1e-08 Score=101.06 Aligned_cols=190 Identities=10% Similarity=-0.040 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhh
Q 035503 539 PIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615 (788)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 615 (788)
..+..++..+...|++++|+..|+.... .+...|..+..+|...|++++|+..+++.++.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3445555556666666666666654332 344556666666666666666666666655532 224455566666666
Q ss_pred ccCcHHHHHHHHHhcHhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 035503 616 HAGLVNEGLELFVGMFSDHQVKPSM-EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 616 ~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
..|++++|+..|+++.+.. |+. ..+...+....+..+...... .......++......+... ..|+.++|+..
T Consensus 84 ~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHH
Confidence 6777777777666655321 211 111111111111111111111 1122223333333333322 26889999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhC-CCcHHHHHHHHHHHHC
Q 035503 695 SEHLLQLEPDNPGNYVALSNAYAAS-GRWNEVSQVRDIMKEK 735 (788)
Q Consensus 695 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 735 (788)
++++++.+|++......+..++.+. +++++|.++|+++.+.
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999998888878888777776 7788999999887653
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.75 E-value=3.4e-06 Score=89.79 Aligned_cols=203 Identities=8% Similarity=-0.049 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHH-HHHHhh
Q 035503 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA-KRVFDI 563 (788)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 563 (788)
+.+..+|++++.. .+-+...|...+.-+...|+.+.|..++++++.. | .+...+...+.. .+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~y~~~----~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLYYGLV----MDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHH----TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHHHHhh----cchhHHHHHHHHH
Confidence 3456788887764 3445667777777777888889999999998888 4 444444332221 111111 111111
Q ss_pred CC----------C--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-hhccCcHHHHHHHHHhc
Q 035503 564 SP----------S--KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA-CSHAGLVNEGLELFVGM 630 (788)
Q Consensus 564 ~~----------~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~ 630 (788)
.. . .....|...+..+.+.+..+.|..+|++. ... ..+...|...... +...++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 0 01135777777777788899999999988 321 2233444322222 22234688999999988
Q ss_pred HhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 631 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
.+.++- ++..+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++++
T Consensus 347 l~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 875422 23444566777788899999999999984 2466788888877888999999888888875
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=4.6e-08 Score=88.90 Aligned_cols=122 Identities=7% Similarity=0.089 Sum_probs=89.2
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH-HHhcCCH--
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLST-CVKSNET-- 688 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~-~~~~g~~-- 688 (788)
+...|++++|+..+++..... +.+...+..++..|...|++++|...++++ .. +.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 345667777777777665431 223566667777777777777777777776 22 2355677778887 7788888
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
++|+..++++++.+|+++..+..++.+|...|++++|...++++.+..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999887653
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=2.6e-08 Score=100.92 Aligned_cols=94 Identities=15% Similarity=0.035 Sum_probs=79.7
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
..+..++.+|.+.|++++|+..++++ .. +.+...|..++.+|...|++++|+..++++++++|+++.++..++.++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 56677888888888888888888777 22 34567889999999999999999999999999999999999999999999
Q ss_pred CCCcHHH-HHHHHHHHH
Q 035503 719 SGRWNEV-SQVRDIMKE 734 (788)
Q Consensus 719 ~g~~~~A-~~~~~~~~~ 734 (788)
.|++++| ...+++|..
T Consensus 277 ~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 277 IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999999 456666643
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=3.2e-07 Score=86.20 Aligned_cols=152 Identities=8% Similarity=-0.032 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 619 (788)
.+..++..+...|++++|+..|+....++..+|..++.+|...|++++|+..|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 355678889999999999999999988888899999999999999999999999988864 3466788888889999999
Q ss_pred HHHHHHHHHhcHhhcCCC-------------CC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 035503 620 VNEGLELFVGMFSDHQVK-------------PS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVK 684 (788)
Q Consensus 620 ~~~A~~~~~~~~~~~~~~-------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 684 (788)
+++|+..|+++.+...-. |. ...+..++.+|.+.|++++|.+.++++ ...|+. .
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------~ 155 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------R 155 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------G
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc-----------c
Confidence 999999999987532111 11 267779999999999999999999887 455553 2
Q ss_pred cCCHHHHHHHHHHHHhcCC
Q 035503 685 SNETELAEYISEHLLQLEP 703 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p 703 (788)
.+..+.|...+++.....|
T Consensus 156 ~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 156 HSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp GGHHHHHHHHHHTTCCCCC
T ss_pred cchHHHHHHHHHhcccccc
Confidence 3445556555554444333
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.75 E-value=6.5e-08 Score=92.45 Aligned_cols=183 Identities=7% Similarity=-0.103 Sum_probs=142.9
Q ss_pred HcCCHHHHHHHHhhCCC---CChhhHHHH-------HHHHHhCCCHHHHHHHHHHHHHcCCCCCH---------------
Q 035503 550 KCGNIHQAKRVFDISPS---KELPVYNAM-------ISGYAMHGLAVEALALFKNLQQKGIDPDS--------------- 604 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--------------- 604 (788)
..++...|.+.|.++.. .....|..+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999998765 334588888 5677777777777777776443 33321
Q ss_pred -------hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCH----H
Q 035503 605 -------ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA----H 673 (788)
Q Consensus 605 -------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 673 (788)
.....+...+...|++++|.+.|+.+.. ..|+......++..+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223355668899999999999998863 3465446667888999999999999999987544433 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLE--PD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.+..++.++...|++++|+..|+++.... |. .+...+.++.++.++|+.++|...|+++....+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 68888999999999999999999998643 55 556889999999999999999999999988764
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=1.1e-07 Score=85.21 Aligned_cols=126 Identities=7% Similarity=-0.023 Sum_probs=85.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVK 684 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 684 (788)
+..+...+...|++++|...|+++.... +.+...+..++.++...|++++|++.++++ . .+.+...|..++.++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3334444555555555555555554321 122445555566666666666666666555 1 22345678888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHH--HHHhCCCcHHHHHHHHHHHH
Q 035503 685 SNETELAEYISEHLLQLEPDNPGNYVALSN--AYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 734 (788)
.|++++|+..++++++.+|+++..+..++. .+...|++++|...++....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999998888855544 48889999999999887654
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=1.2e-07 Score=81.22 Aligned_cols=114 Identities=10% Similarity=0.030 Sum_probs=74.2
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLST 681 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 681 (788)
..+..+...+...|++++|+..|+++.. ..| +...+..++.+|...|++++|++.++++ . .+.+...+..++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3344444445555555555555555442 222 2344445555555555555555555554 1 12345677788888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
+...|++++|+..++++++.+|++...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999999999988899999988887764
No 133
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.69 E-value=4e-08 Score=82.47 Aligned_cols=97 Identities=16% Similarity=-0.006 Sum_probs=83.9
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
..+..++..+.+.|++++|+..++++ ... .+...|..++.++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556778888999999999999888 333 4677899999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHCCC
Q 035503 719 SGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 719 ~g~~~~A~~~~~~~~~~~~ 737 (788)
.|++++|...++++++..+
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999887653
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.1e-07 Score=80.71 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=81.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
..+..++..+.+.|++++|++.|+++ . .+.+...|..++.++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45556777778888888888888776 2 233567888999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHCC
Q 035503 719 SGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 719 ~g~~~~A~~~~~~~~~~~ 736 (788)
.|++++|...+++.++..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 999999999999988764
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=2.2e-06 Score=85.08 Aligned_cols=158 Identities=12% Similarity=-0.037 Sum_probs=117.8
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCC---Chh------hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----HhHHHH
Q 035503 544 LVDMYAKCGNIHQAKRVFDISPSK---ELP------VYNAMISGYAMHGLAVEALALFKNLQQKGID-PD----SITFTN 609 (788)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 609 (788)
.+..+...|++++|...++..... +.. .+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466778888899998888765431 111 2335777777888999999999998874322 22 235888
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcC----CCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCC-HHHHH
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQ----VKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP-------CDPD-AHIIG 676 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 676 (788)
+..+|...|++++|+.+|+++++... ..+. ..++..++..|.+.|++++|+++++++- ..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999999874321 1111 3467799999999999999999988771 1122 56888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhc
Q 035503 677 SLLSTCVKSN-ETELAEYISEHLLQL 701 (788)
Q Consensus 677 ~l~~~~~~~g-~~~~A~~~~~~~~~~ 701 (788)
.++.++...| ++++|+..+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 579999999999874
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=1.3e-07 Score=80.50 Aligned_cols=117 Identities=14% Similarity=0.003 Sum_probs=81.3
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTC 682 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~ 682 (788)
..+..+...+...|++++|+..|+++.... +.+...+..++..+...|++++|.+.++++ . .+.+...+..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 334444455555666666666666554321 123445556666666666666666666555 1 223456788888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcH
Q 035503 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 723 (788)
...|++++|+..++++++.+|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999988763
No 137
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.66 E-value=1.1e-07 Score=81.65 Aligned_cols=65 Identities=14% Similarity=-0.013 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQL-------EPDNPGNY----VALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
..|.+++.++...|++++|+..+++++++ +|+++..| +.++.++...|++++|+..|++.++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 48999999999999999999999999999 99999999 9999999999999999999999987643
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=2.3e-07 Score=78.16 Aligned_cols=114 Identities=21% Similarity=0.194 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTC 682 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 682 (788)
..+..+...+...|++++|.++++++.... +.+...+..++..+.+.|++++|..+++++. .+.+...+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 344444455555555555555555554321 1224445555666666666666666665551 223456778888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
...|++++|+..++++++.+|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999998888887654
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.65 E-value=1.5e-07 Score=77.68 Aligned_cols=99 Identities=14% Similarity=0.013 Sum_probs=84.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD--NPGNYVALSNA 715 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 715 (788)
...+..++..+.+.|++++|...++++ . .+.+...|..++..+...|++++|+..++++++.+|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 456667788888888888888888776 2 2345678888999999999999999999999999999 99999999999
Q ss_pred HHhC-CCcHHHHHHHHHHHHCCCc
Q 035503 716 YAAS-GRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 716 ~~~~-g~~~~A~~~~~~~~~~~~~ 738 (788)
|... |++++|.+.++++....+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999 9999999999999877643
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.63 E-value=1.1e-07 Score=80.59 Aligned_cols=94 Identities=7% Similarity=-0.019 Sum_probs=72.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHH
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG-------NYVAL 712 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l 712 (788)
.+..++..+.+.|++++|++.|+++ ... .+...|..++.+|...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3456677777777777777777776 223 34567888888888888888888888888888887643 67778
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHC
Q 035503 713 SNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 713 ~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
|.+|...|++++|++.|++.++.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888889999999988887764
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=6.4e-07 Score=88.97 Aligned_cols=161 Identities=11% Similarity=-0.048 Sum_probs=109.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CCh------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCC--HhH
Q 035503 541 VTSLVDMYAKCGNIHQAKRVFDISPS---KEL------PVYNAMISGYAMHGLAVEALALFKNLQQKGI---DPD--SIT 606 (788)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~~ 606 (788)
+...+..+...|++++|.+.++...+ ... ..+..+...+...|++++|+..+++...... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455666777777777777653321 111 1234456667778888888888888765321 111 346
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHHHHhCC-C------CC-CHH
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-----MEHFGCVVNLLSRCGNLDEALRVILTMP-C------DP-DAH 673 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------~p-~~~ 673 (788)
+..+...|...|++++|+.+|+++.......|+ ..++..++..|.+.|++++|+++++++- . .. -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777777888888888888888887633222232 1467788888889999999988887761 1 11 156
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 035503 674 IIGSLLSTCVKSNETELA-EYISEHLLQL 701 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 701 (788)
++..++..|...|++++| ...+++++.+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788888899999999999 7778888763
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=3.7e-07 Score=84.93 Aligned_cols=156 Identities=16% Similarity=0.081 Sum_probs=74.8
Q ss_pred HcCCHHHHHH---HHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHhhccCcHH
Q 035503 550 KCGNIHQAKR---VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK----GIDP-DSITFTNILNACSHAGLVN 621 (788)
Q Consensus 550 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~ 621 (788)
..|++++|.+ .+...+.....++..+...+...|++++|+..+++..+. +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322223345555555666666666666666554441 1111 1233444444455555555
Q ss_pred HHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035503 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP--DAHIIGSLLSTCVKSNETELAEYISEHLL 699 (788)
Q Consensus 622 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (788)
+|...+++......-.++ .| ....+..++..+...|++++|+..+++++
T Consensus 84 ~A~~~~~~al~~~~~~~~-----------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLPE-----------------------------DPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSCC-----------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc-----------------------------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 555555544332111110 11 11234555555666666666666666665
Q ss_pred hcCCC--C----CchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 700 QLEPD--N----PGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 700 ~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
+..+. + ..++..++.+|...|++++|...+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 54222 1 12345666667777777777666666544
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.60 E-value=3e-07 Score=79.19 Aligned_cols=99 Identities=13% Similarity=-0.064 Sum_probs=84.4
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 639 SMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
+...+..++..+...|++++|...++++ . .+.+...|..++..+...|++++|+..++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566677778888888888888887776 2 2334678889999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHCCC
Q 035503 717 AASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 717 ~~~g~~~~A~~~~~~~~~~~~ 737 (788)
...|++++|...++++.+..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHCh
Confidence 999999999999999987653
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.60 E-value=2e-07 Score=83.41 Aligned_cols=109 Identities=13% Similarity=0.022 Sum_probs=75.8
Q ss_pred CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHH
Q 035503 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLL 679 (788)
Q Consensus 603 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~ 679 (788)
+...+..+...+...|++++|+..|+++++. .| +...+..++.+|.+.|++++|+..++++ ... .+...|..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455666667777888888888888877643 34 3566667777777777777777777776 222 3456677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
.++...|++++|+..++++++++|+++..+...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 77777777777777777777777777776555443
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.57 E-value=1.2e-07 Score=82.84 Aligned_cols=104 Identities=11% Similarity=-0.026 Sum_probs=74.8
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLST 681 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 681 (788)
..+..+...+...|++++|+..|++++.. .| +...+..++.+|.+.|++++|++.++++ .. +.+...+..++.+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 44555556667777777777777776532 34 3555667777777777777777777776 22 2345678888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 682 CVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
+...|++++|+..++++++++|+++.....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 999999999999999999999988776443
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=1.8e-07 Score=81.49 Aligned_cols=98 Identities=9% Similarity=-0.020 Sum_probs=60.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTC 682 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 682 (788)
.+..+...+.+.|++++|+..|++++. +.|+ ...+..++.+|.+.|++++|++.|+++ ... .++..|..++.+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 344444455555555555555555542 2333 444455556666666666666665555 122 2355777788888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 683 VKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
...|++++|+..|++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888743
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=3e-07 Score=85.17 Aligned_cols=171 Identities=9% Similarity=-0.051 Sum_probs=100.7
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHH
Q 035503 545 VDMYAKCGNIHQAKRVFDISPSK---ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621 (788)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 621 (788)
+......|+++++.+.++..... ....+..+...+...|++++|+..|++.+... |+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHH
Confidence 33444555666666655533221 22356667777777777777777777776642 221100000 000
Q ss_pred HHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035503 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699 (788)
Q Consensus 622 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (788)
.-. ..+ ....+..++.+|.+.|++++|+..++++ . .+.+...+..++.++...|++++|+..+++++
T Consensus 81 ~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 000 1245567777788888888888887776 2 23456788899999999999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhCCCcHHHH-HHHHHHHHCC
Q 035503 700 QLEPDNPGNYVALSNAYAASGRWNEVS-QVRDIMKEKG 736 (788)
Q Consensus 700 ~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 736 (788)
+++|+++.++..++.++...|+.+++. ..++.|...+
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999888887 5566665554
No 148
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.55 E-value=1.9e-05 Score=78.11 Aligned_cols=226 Identities=10% Similarity=0.060 Sum_probs=129.3
Q ss_pred CCCchHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc-C-CHHH
Q 035503 481 NSCGNEAILFFQEMLETGIKPS-TTTITCALSACTDVA-SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC-G-NIHQ 556 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 556 (788)
.+..++|++++++++.. .|+ ...++.-...+...+ .++++...++.++...| .+..+|+.-..++... + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHH
Confidence 33445666666666653 343 334444444444555 46677777777776666 5566666666666655 5 6677
Q ss_pred HHHHHhhCCCC---ChhhHHHHHHHHHhCCCHH--------HHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc------
Q 035503 557 AKRVFDISPSK---ELPVYNAMISGYAMHGLAV--------EALALFKNLQQKGIDPDSITFTNILNACSHAGL------ 619 (788)
Q Consensus 557 A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------ 619 (788)
++++++.+.+. +..+|+.-..++.+.|+++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 77777766653 3445655444444444444 7888888888764 3366677777666666665
Q ss_pred -HHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCCh--------------------HHHHHHHHhCC-C-------C
Q 035503 620 -VNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNL--------------------DEALRVILTMP-C-------D 669 (788)
Q Consensus 620 -~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~-------~ 669 (788)
++++++.+++++.. .|+ ...+..+...+.+.|+. .+..++..++. . .
T Consensus 223 ~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 223 SLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 67778888777642 344 45555555666655543 23333333331 1 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHHHHH
Q 035503 670 PDAHIIGSLLSTCVKSNETELAEYISEHLL-QLEPDNPGNYVALS 713 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~ 713 (788)
+.+..+..++..|...|+.++|.++++.+. +.||-....|...+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 344556666666666666666776666665 45666555544443
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=4.4e-07 Score=75.49 Aligned_cols=95 Identities=16% Similarity=0.109 Sum_probs=58.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
.+..++..+...|++++|...++++ . .+.+...+..++..+...|++++|+..++++++.+|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444555555556666665555554 1 1224455666666666666666666666666666666666666666666666
Q ss_pred CCcHHHHHHHHHHHHCC
Q 035503 720 GRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 720 g~~~~A~~~~~~~~~~~ 736 (788)
|++++|...+++..+..
T Consensus 86 ~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 66666666666665543
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=4.7e-07 Score=82.09 Aligned_cols=128 Identities=9% Similarity=0.032 Sum_probs=98.2
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH-HhhcCCh--
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL-LSRCGNL-- 656 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 656 (788)
...|++++|+..+++..... +.+...+..+..+|...|++++|+..|+++.... +.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888887754 3466778888888899999999999999887532 2245667788888 7788998
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 035503 657 DEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 657 ~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
++|...++++ ... .+...+..++..+...|++++|+..++++++.+|+++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999998887 233 34678889999999999999999999999999999866543
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=5e-07 Score=77.16 Aligned_cols=97 Identities=20% Similarity=0.132 Sum_probs=88.3
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
...+..++..+.+.|++++|.+.++++ ...| +...+..++..+...|++++|+..++++++.+|+++.++..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 566778999999999999999999987 3434 67789999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHCC
Q 035503 718 ASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~~~~ 736 (788)
..|++++|...+++..+..
T Consensus 96 ~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHHHhC
Confidence 9999999999999988764
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.3e-06 Score=76.33 Aligned_cols=111 Identities=14% Similarity=0.006 Sum_probs=63.1
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSL 678 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l 678 (788)
..+..+...+...|++++|+..|+++. ...|+ ...+..++..|...|++++|+..++++ .. +.+...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 334444444445555555555555443 22333 334445555555555555555555544 11 2244566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 679 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
+.++...|++++|+..++++++++|+++..+..+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 7777777778888888888887777777776666665443
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=8.2e-07 Score=77.54 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=89.2
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 035503 639 SMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713 (788)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 713 (788)
+...+..++..+.+.|++++|.+.++++ ...|+ ...|..++..+...|++++|+..++++++.+|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3566778899999999999999999988 55666 578889999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHCC
Q 035503 714 NAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 714 ~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+|...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999998764
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.49 E-value=1.2e-06 Score=72.85 Aligned_cols=109 Identities=14% Similarity=0.033 Sum_probs=72.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCV 683 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 683 (788)
.+..+...+...|++++|+..|+++.... +.+...+..++..+.+.|++++|...++++ .. +.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444445555566666666665554321 123445555666666666666666666555 12 234567888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 684 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
..|++++|+..++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999988888877764
No 155
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=5.4e-06 Score=82.07 Aligned_cols=215 Identities=11% Similarity=0.056 Sum_probs=159.8
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHhhCCC---CChhhHHHHHHHHHhC-C-CHHHHHH
Q 035503 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG-NIHQAKRVFDISPS---KELPVYNAMISGYAMH-G-LAVEALA 590 (788)
Q Consensus 517 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-g-~~~~A~~ 590 (788)
+..++|..+.+.++..+| .+..+|+.-...+...| .+++++..++.+.. ++..+|+.-..++... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 345679999999999998 67788888888888888 59999999987764 5556888777777665 6 8899999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHhhccCcHH--------HHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCC-------
Q 035503 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVN--------EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN------- 655 (788)
Q Consensus 591 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------- 655 (788)
+++++.+.. +-|...|..-..++.+.|.++ ++++.++++++.. .-+...++....++.+.++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHH
Confidence 999998764 336777777666666666666 8999999998642 3356777777788877776
Q ss_pred hHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCCc
Q 035503 656 LDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNET--------------------ELAEYISEHLLQLE------PDNPG 707 (788)
Q Consensus 656 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~~~ 707 (788)
+++++++++++ . .+.|...|+.+...+...|+. ..-......+.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 68899998877 2 345677898888887766653 33333333333332 45677
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
++..|+++|.+.|+.++|.++++.+.++
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8889999999999999999999998654
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=8.5e-07 Score=87.19 Aligned_cols=189 Identities=10% Similarity=-0.004 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 035503 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGY 579 (788)
Q Consensus 503 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 579 (788)
...+..+...+...|++++|...++.+++..+ .+...+..++.+|.+.|++++|+..++.... .+...+..++.+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34445555556666666666666666666655 4666777788888888888888888876554 3445777888888
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 658 (788)
...|++++|+..|++..+.. |+. ..+...+..... ..++.... .. ......++......+...+ .|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~~-~~-~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRWN-SI-EERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHHH-HH-HHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHHH-HH-HHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 88888888888888877642 211 111111111111 11111111 12 1114444555544554433 688888
Q ss_pred HHHHHHhC-CCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 035503 659 ALRVILTM-PCDPDAH-IIGSLLSTCVKS-NETELAEYISEHLLQL 701 (788)
Q Consensus 659 A~~~~~~~-~~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 701 (788)
|++.++++ ...|+.. ....+...+... +.+++|..+++++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888776 4556543 334444444444 6788899999888764
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.48 E-value=7.1e-07 Score=79.49 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
...|..++.+|...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++.++..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 35788888899999999999999999999999999999999999999999999999999988764
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.47 E-value=9.2e-07 Score=74.40 Aligned_cols=97 Identities=22% Similarity=0.224 Sum_probs=87.5
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
...+..++..+.+.|++++|.+.++++. .+.+...+..++..+...|++++|+..++++++.+|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4567788999999999999999998872 33456788999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHCC
Q 035503 718 ASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~~~~ 736 (788)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999998764
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.47 E-value=2.1e-05 Score=77.59 Aligned_cols=190 Identities=11% Similarity=0.007 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC--HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC-HHHHHHHH
Q 035503 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN--IHQAKRVFDISPS---KELPVYNAMISGYAMHGL-AVEALALF 592 (788)
Q Consensus 519 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~-~~~A~~~~ 592 (788)
++++..+++.++..+| .+..+|+.-..++...|+ +++++.+++.+.+ .|..+|+.-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4566677777777666 566666666666666663 6777777766554 445566666666666666 47777777
Q ss_pred HHHHHcCCCCCHhHHHHHHHHhhcc--------------CcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhc----
Q 035503 593 KNLQQKGIDPDSITFTNILNACSHA--------------GLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRC---- 653 (788)
Q Consensus 593 ~~m~~~~~~p~~~~~~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---- 653 (788)
+++++.. +-|...|+.....+... +.++++++.++.++.. .|+ ...+..+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 7777754 23555555554443333 4466666666666532 343 34444333333333
Q ss_pred -------CChHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 654 -------GNLDEALRVILTM-PCDPDAHIIGSLLSTC-----VKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 654 -------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.+++++||....-|..+..
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3455666666655 334443 232222211 12455666666777777777766555555543
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=7.8e-07 Score=75.25 Aligned_cols=110 Identities=8% Similarity=-0.078 Sum_probs=72.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTC 682 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 682 (788)
.+..+...+...|++++|+..|+++++. .| +...+..++.+|.+.|++++|+..++++ ... .+...|..++.++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444444555566666666666655432 23 2455556666666666666666666655 222 3456788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHh
Q 035503 683 VKSNETELAEYISEHLLQLE------PDNPGNYVALSNAYAA 718 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 718 (788)
...|++++|+..++++++++ |+++.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 89999999999999999998 8877777777666543
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.47 E-value=4.8e-07 Score=76.91 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=68.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHH
Q 035503 644 GCVVNLLSRCGNLDEALRVILTM-PCDPD-A---HIIGSLLSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALSNA 715 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 715 (788)
..++..+.+.|++++|.+.++++ ...|+ . ..+..++.++...|++++|+..++++++.+|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556666777777777777665 11222 2 467777778888888888888888888888887 6678888888
Q ss_pred HHhCCCcHHHHHHHHHHHHCC
Q 035503 716 YAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 716 ~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|...|++++|...++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888887654
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.47 E-value=1e-06 Score=78.68 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=51.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
..+..++..+.+.|++++|++.|+++ .. +.+...|..++.+|...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445555555555555555555554 11 22344555555555555555555555555555555555555555555555
Q ss_pred CCCcHHHHHHHHHHHHC
Q 035503 719 SGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 719 ~g~~~~A~~~~~~~~~~ 735 (788)
.|++++|...+++.++.
T Consensus 92 ~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 55555555555555443
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.45 E-value=1.5e-05 Score=78.65 Aligned_cols=180 Identities=11% Similarity=-0.011 Sum_probs=132.9
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc-HHHHHHHH
Q 035503 554 IHQAKRVFDISPS---KELPVYNAMISGYAMHG--LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL-VNEGLELF 627 (788)
Q Consensus 554 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~~~ 627 (788)
+++++.+++.+.. ++..+|+.-..++...| .+++++.+++++.+.. +-|...|..-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777776543 56678888777888888 4899999999999975 3477788877777778888 68999999
Q ss_pred HhcHhhcCCCCCcchHHHHHHHHhhc--------------CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc------
Q 035503 628 VGMFSDHQVKPSMEHFGCVVNLLSRC--------------GNLDEALRVILTM--PCDPDAHIIGSLLSTCVKS------ 685 (788)
Q Consensus 628 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~------ 685 (788)
++++... +-+...++....++.+. +.++++++++.++ ..+.|...|+-+...+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998642 33456666655555544 4588899998887 2445677888776666555
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH---HhCCCcHHHHHHHHHHHHCC
Q 035503 686 -----NETELAEYISEHLLQLEPDNPGNYVALSNAY---AASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 686 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~ 736 (788)
+.+++++..++++++++|++.-.+..++.+. ...|..++....+.++.+..
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4579999999999999999855544444332 24678888889999887754
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.45 E-value=9.1e-07 Score=93.75 Aligned_cols=144 Identities=13% Similarity=0.034 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
..|..+...+.+.|++++|+..|++.++.. |+...+ . .+...+ ... -....|..++.+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~~ 326 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESKA-SES--------FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHHH-HHH--------HHHHHHHHHHHH
Confidence 466777778888888888888888776642 221100 0 000000 000 013466778888
Q ss_pred HhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHH
Q 035503 650 LSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
|.+.|++++|+..++++ .. +.+...|..++.+|...|++++|+..|+++++++|++..++..++.++.+.|++++|.+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877 22 33567899999999999999999999999999999999999999999999999998875
Q ss_pred -HHHHHHHC
Q 035503 728 -VRDIMKEK 735 (788)
Q Consensus 728 -~~~~~~~~ 735 (788)
.+++|..+
T Consensus 407 ~~~~~~f~k 415 (457)
T 1kt0_A 407 RIYANMFKK 415 (457)
T ss_dssp HHHHHC---
T ss_pred HHHHHHHhh
Confidence 46666544
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=7.2e-07 Score=77.36 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=68.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCV 683 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 683 (788)
+..+...+...|++++|+..|++++.. .| +...+..++.+|.+.|++++|+..++++ . .+.+...+..++.++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 334444555666666666666655532 23 2444556666666666666666666655 1 1234556778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 684 KSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 684 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
..|++++|+..++++++++|+++........
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 8999999999999999999988777655433
No 166
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=2.5e-06 Score=79.14 Aligned_cols=95 Identities=16% Similarity=0.064 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---------CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC--
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPS---------KELPVYNAMISGYAMHGLAVEALALFKNLQQK----GIDP-- 602 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-- 602 (788)
..++..++..|...|++++|...+++... ....++..+...+...|++++|+..+++..+. +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 44555555666666666666665553322 11235677778888888888888888876553 1011
Q ss_pred CHhHHHHHHHHhhccCcHHHHHHHHHhcHh
Q 035503 603 DSITFTNILNACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 603 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 632 (788)
....+..+...+...|++++|...+++...
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123455666677778888888888777653
No 167
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=1.4e-06 Score=74.01 Aligned_cols=97 Identities=13% Similarity=0.039 Sum_probs=87.5
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|+..++++++.+|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456678889999999999999999987 2 33467788999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHCC
Q 035503 718 ASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~~~~ 736 (788)
..|++++|...+++..+..
T Consensus 92 ~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 9999999999999998764
No 168
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=3.5e-06 Score=75.14 Aligned_cols=127 Identities=16% Similarity=0.038 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
.|..++..+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.... +.+...+..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 46667777778888888888888877653 3356667777777888888888888888776431 23356677888888
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 651 SRCGNLDEALRVILTM-PCDP-DAHIIG--SLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
.+.|++++|.+.++++ ...| +...+. ..+..+...|++++|+..+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888776 2222 334443 333446677888888888887654
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=2.4e-06 Score=90.42 Aligned_cols=163 Identities=7% Similarity=-0.139 Sum_probs=111.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCH----hHHHHHHHHhhccCcHHHHHHHHHhcHhhc---CCCCC-cch
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKG-IDPDS----ITFTNILNACSHAGLVNEGLELFVGMFSDH---QVKPS-MEH 642 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~ 642 (788)
+..++..|...|++++|.+++.++...- ..++. .....+...+...|++++|..+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5567777777888888877777755421 11222 122333334566788888888887765422 22222 456
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC----C-C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C----Cc
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM----P-C--DPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD---N----PG 707 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~----~-~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~----~~ 707 (788)
+..++..|...|++++|..+++++ . . ++. ..++..++..|...|++++|...+++++...+. + ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 668888999999999999888776 1 1 122 346788888899999999999999998876432 2 24
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
.+..++.++...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566778888899999999988877754
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.39 E-value=3.9e-07 Score=92.27 Aligned_cols=149 Identities=8% Similarity=-0.072 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
..|..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...|..++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 45777888888899999999999998774 354332 334455555543331 1367789999
Q ss_pred HhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH-HHhCCCcHHHH
Q 035503 650 LSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA-YAASGRWNEVS 726 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~ 726 (788)
|.+.|++++|+..++++ ... .+...|..++.+|...|++++|+..++++++++|+++.++..|+.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 333 3567899999999999999999999999999999999999999988 45567788888
Q ss_pred HHHHHHHHCCCc
Q 035503 727 QVRDIMKEKGLR 738 (788)
Q Consensus 727 ~~~~~~~~~~~~ 738 (788)
..|++|....+.
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 899988776543
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.39 E-value=1.9e-07 Score=77.87 Aligned_cols=84 Identities=17% Similarity=0.046 Sum_probs=58.3
Q ss_pred cCChHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHH
Q 035503 653 CGNLDEALRVILTM-PC---DPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
.|++++|+..|+++ .. .|+ ...+..++.++...|++++|+..++++++.+|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666555 22 132 34677777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHCC
Q 035503 728 VRDIMKEKG 736 (788)
Q Consensus 728 ~~~~~~~~~ 736 (788)
.+++.++..
T Consensus 83 ~~~~al~~~ 91 (117)
T 3k9i_A 83 LLLKIIAET 91 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 888776653
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=1.7e-06 Score=73.08 Aligned_cols=105 Identities=10% Similarity=-0.024 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNL 649 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 649 (788)
++..++..+.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|++.++++++. .|+ ...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~--- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI--- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH---
Confidence 45556666666666666666666666542 223455555555666666666666666655432 111 1111111
Q ss_pred HhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
..++..++.++...|++++|+..|+++++..|+
T Consensus 83 ----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 ----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 135666777788888889999999988888876
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.34 E-value=5.6e-07 Score=77.29 Aligned_cols=73 Identities=12% Similarity=0.025 Sum_probs=55.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CC-------CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-PC-------DPDA-HII----GSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
.|..++.++.+.|++++|+..++++ .. .|+. ..| ...+.++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5556666666666666666666555 22 6654 578 899999999999999999999999999998877
Q ss_pred HHHHHH
Q 035503 709 YVALSN 714 (788)
Q Consensus 709 ~~~l~~ 714 (788)
+.-+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 655443
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=2.1e-06 Score=73.74 Aligned_cols=112 Identities=10% Similarity=-0.086 Sum_probs=72.2
Q ss_pred CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHH
Q 035503 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLL 679 (788)
Q Consensus 603 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~ 679 (788)
+...+..+...+...|++++|+..|++++.. .|+ ...+..++.++...|++++|...++++ . .+.+...|..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3455555555666666666666666665532 232 455556666666666666666666665 1 223456788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHH
Q 035503 680 STCVKSNETELAEYISEHLLQLEPD-----NPGNYVALSNAYA 717 (788)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 717 (788)
.++...|++++|+..++++++++|+ +..+...+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999988887 4555555544433
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=1.4e-06 Score=73.93 Aligned_cols=94 Identities=11% Similarity=0.131 Sum_probs=63.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHH
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN-------PGNYVAL 712 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l 712 (788)
.+..++..+...|++++|...++++ . .+.+...+..++..+...|++++|+..++++++..|++ +.++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3445555666666666666666555 1 22345566667777777777777777777777776665 6677777
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHC
Q 035503 713 SNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 713 ~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
+.+|...|++++|...++++.+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777777777777664
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=1.1e-06 Score=93.35 Aligned_cols=117 Identities=10% Similarity=0.016 Sum_probs=87.1
Q ss_pred HHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH
Q 035503 612 NACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNET 688 (788)
Q Consensus 612 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~ 688 (788)
..+.+.|++++|++.|+++++. .|+ ...+..++.+|.+.|++++|++.++++ ... .+...|..++.+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3455667777777777777643 343 566667777777777777777777776 233 3466888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH--HHhCCCcHHHHHHHHH
Q 035503 689 ELAEYISEHLLQLEPDNPGNYVALSNA--YAASGRWNEVSQVRDI 731 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 731 (788)
++|+..++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8889999999998873
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=5.9e-06 Score=87.83 Aligned_cols=115 Identities=16% Similarity=0.058 Sum_probs=57.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCCh
Q 035503 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNL 656 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 656 (788)
.+.+.|++++|++.|++.++.. +.+...+..+..++.+.|++++|+..++++++ +.|+ ...+..++.+|.+.|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCH
Confidence 3445566666666666655542 22345555555556666666666666665543 2333 44555566666666666
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 035503 657 DEALRVILTM-PCDP-DAHIIGSLLST--CVKSNETELAEYISE 696 (788)
Q Consensus 657 ~~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 696 (788)
++|++.++++ ...| +...+..+..+ +...|++++|+..++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666554 1111 12233333333 555566666666666
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.29 E-value=1.7e-06 Score=76.72 Aligned_cols=63 Identities=21% Similarity=0.120 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPD------NPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
..+..++..+...|++++|+..++++++..+. ....+..++.+|...|++++|.+.+++..+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35666777778888888888888888765322 2456788888999999999999998887653
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.27 E-value=4.1e-06 Score=70.96 Aligned_cols=105 Identities=12% Similarity=0.049 Sum_probs=68.1
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCCCc----chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSM----EHFGCVVNLLSRCGNLDEALRVILTM-PCDPD----AHIIGSLLS 680 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 680 (788)
+...+...|++++|+..|+++.+.. |+. ..+..++.++.+.|++++|...++++ ...|+ ...+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3344555666666666666655432 222 34556666666666666666666665 12222 456777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
++...|++++|+..++++++..|+++........+-.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 8889999999999999999999998766655554443
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=2.3e-06 Score=87.50 Aligned_cols=137 Identities=9% Similarity=-0.004 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVN 648 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 648 (788)
..|..+...+.+.|++++|+..|++.++.- ++.. ..... +... ...| +...|..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 356677777888888888888888766520 1000 00001 1110 1222 2467778889
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHH
Q 035503 649 LLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 649 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 726 (788)
+|.+.|++++|++.++++ ...| +...+..++.+|...|++++|+..++++++++|++..++..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4444 46788999999999999999999999999999999999999999999999888876
Q ss_pred HH
Q 035503 727 QV 728 (788)
Q Consensus 727 ~~ 728 (788)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=3.5e-05 Score=83.38 Aligned_cols=136 Identities=7% Similarity=-0.015 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccC--cHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcC-ChHHHH
Q 035503 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAG--LVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCG-NLDEAL 660 (788)
Q Consensus 585 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~ 660 (788)
++++++.++++.+.. +-+..+|..-..++.+.| +++++++.++++++. .| +...|..-..++.+.| ..++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el 164 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEEL 164 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHH
Confidence 455555555555542 224445555555555555 446666666665532 22 2444444455555555 566666
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHH
Q 035503 661 RVILTM-PCD-PDAHIIGSLLSTCVKS--------------NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724 (788)
Q Consensus 661 ~~~~~~-~~~-p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 724 (788)
++++++ ... -+..+|+....++... +.++++++.+++++..+|++..+|..+.+++.+.++.++
T Consensus 165 ~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 666665 222 3455666666555442 567999999999999999999999999999999998665
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.24 E-value=3.6e-06 Score=70.33 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=60.0
Q ss_pred HHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 035503 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVK 684 (788)
Q Consensus 608 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 684 (788)
..+...+.+.|++++|+..|+++++. .| +...+..++.++.+.|++++|+..++++ ...| +...|..++.++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444556666666666666666532 33 3455556666666666666666666665 2233 45677788888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC
Q 035503 685 SNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8889999999999998888754
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.24 E-value=1.6e-06 Score=77.17 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=63.9
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP-GNYVALSNAY 716 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 716 (788)
...+..++.+|.+.|++++|+..++++ .. +.+...|..++.++...|++++|+..++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456778888888888998888888877 23 33567889999999999999999999999999999987 5566665554
Q ss_pred HhC
Q 035503 717 AAS 719 (788)
Q Consensus 717 ~~~ 719 (788)
.+.
T Consensus 143 ~~~ 145 (162)
T 3rkv_A 143 ERR 145 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 184
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.24 E-value=7.5e-06 Score=82.75 Aligned_cols=127 Identities=8% Similarity=-0.022 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--------------HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCC
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPD--------------SITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 636 (788)
.|..+...+.+.|++++|+..|++.++...... ...+..+..++.+.|++++|+..|+++++.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--- 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--- 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 455666666666777777777776666431111 366777777777888888888888877643
Q ss_pred CC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 035503 637 KP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELA-EYISEHLLQ 700 (788)
Q Consensus 637 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 700 (788)
.| +...+..++.+|...|++++|+..|+++ ...| +...+..+..++...|+.++| ...+++++.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 3566777788888888888888887776 2233 456777788888888888877 446666654
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.23 E-value=6.8e-06 Score=69.64 Aligned_cols=47 Identities=13% Similarity=-0.003 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
...+..++.++...|++++|+..++++++..| ++.....+..+....
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 45677788888889999999999999999888 477777776665543
No 186
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=5.5e-06 Score=76.56 Aligned_cols=94 Identities=13% Similarity=-0.003 Sum_probs=74.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC----CCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM----PCDP--------------DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+..++..+.+.|++++|++.|+++ +..| ....+..++.++...|++++|+..++++++.+|+
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 334455555555555555555544 1111 1367888999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 705 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++.++..++.+|...|++++|...+++.++..
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999998764
No 187
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=7.7e-06 Score=66.98 Aligned_cols=99 Identities=10% Similarity=-0.044 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP---DAHIIGSLLST 681 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 681 (788)
.+..+...+...|++++|+..|+++.+.. +.+...+..++.++...|++++|.+.++++ ...| +...|..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34444445555555555555555554321 122444555666666666666666666555 2222 45677777888
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCCC
Q 035503 682 CVKS-NETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 682 ~~~~-g~~~~A~~~~~~~~~~~p~~~ 706 (788)
+... |++++|+..++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888754
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.18 E-value=6.5e-06 Score=66.00 Aligned_cols=67 Identities=21% Similarity=0.232 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+...|..++..+...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++.++..
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3567899999999999999999999999999999999999999999999999999999999987653
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.18 E-value=1.4e-06 Score=72.53 Aligned_cols=99 Identities=8% Similarity=-0.023 Sum_probs=66.6
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEY 693 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~ 693 (788)
.|++++|+..|+++++...-.|+ ...+..++.+|.+.|++++|++.++++ .. +.+...+..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46667777777776531000232 455667777777888888888877776 22 2345678888888999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHH
Q 035503 694 ISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 694 ~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
.++++++..|+++........+
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHH
Confidence 9999999999987665443333
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.16 E-value=1.3e-06 Score=74.77 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=59.7
Q ss_pred cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 653 CGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNE----------TELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
.+.+++|++.+++. . .+.+...|..++.++...++ +++|+..|+++++++|++..+|+.++.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34444555444444 1 12234455555555544443 569999999999999999999999999998875
Q ss_pred -----------CcHHHHHHHHHHHHCCC
Q 035503 721 -----------RWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 721 -----------~~~~A~~~~~~~~~~~~ 737 (788)
++++|.+.|+++++..+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 89999999999988764
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.16 E-value=8e-06 Score=86.04 Aligned_cols=125 Identities=13% Similarity=0.086 Sum_probs=89.8
Q ss_pred hhccCcHHHHHHHHHhcHhhcC--CCCC----cchHHHHHHHHhhcCChHHHHHHHHhC---------CCCCCH-HHHHH
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQ--VKPS----MEHFGCVVNLLSRCGNLDEALRVILTM---------PCDPDA-HIIGS 677 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 677 (788)
+...|++++|+.++++.+.... +.|+ ..+++.|+.+|...|++++|+.+++++ +..|+. .++++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456666666666666544321 1222 345567777777777777777776665 234554 46889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 678 LLSTCVKSNETELAEYISEHLLQ-----LEPDNPGN---YVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 678 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
|+..|..+|++++|+.+++++++ +.|++|.+ ...|..++.++|++++|..+++++++...+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987 46777665 457788899999999999999999886533
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=3.3e-05 Score=81.49 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=16.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHhC
Q 035503 475 ISGLTQNSCGNEAILFFQEMLET 497 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~ 497 (788)
...+...|++++|++.|.++++.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~ 33 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDK 33 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh
Confidence 34566778888888888877764
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=6.6e-06 Score=72.84 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cch
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGID-PD----SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEH 642 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~ 642 (788)
+..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|..+++++.....-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444555555556666666655554432100 11 124455555666666666666666665432211111 234
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTMP----CDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+..++..+...|++++|.+.++++- ..++ ...+..++..+...|++++|+..+++++++...
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777766651 1111 245677788888999999999999998876443
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=3.7e-06 Score=68.95 Aligned_cols=91 Identities=16% Similarity=0.000 Sum_probs=74.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN------PGNYVA 711 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~ 711 (788)
...+..++..+.+.|++++|++.++++ . .+.+...|..++.++...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 455667777888888888888888776 2 23356788899999999999999999999999999998 778888
Q ss_pred HHHHHHhCCCcHHHHHHHH
Q 035503 712 LSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~ 730 (788)
++.++...|++++|...++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 9999999888887776554
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.06 E-value=8.3e-06 Score=67.42 Aligned_cols=79 Identities=11% Similarity=0.036 Sum_probs=64.9
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 658 EALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 658 ~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
+|++.++++ ... .+...|..++..+...|++++|+..++++++.+|+++..|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555544 223 356678888889999999999999999999999999999999999999999999999999988775
Q ss_pred C
Q 035503 736 G 736 (788)
Q Consensus 736 ~ 736 (788)
.
T Consensus 83 ~ 83 (115)
T 2kat_A 83 A 83 (115)
T ss_dssp H
T ss_pred c
Confidence 4
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.05 E-value=2.4e-05 Score=82.71 Aligned_cols=66 Identities=14% Similarity=0.013 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
..+|..++.+|...|++++|+..++++++++|+++.+|+.++.+|...|++++|...|+++++..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 468889999999999999999999999999999999999999999999999999999999988653
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.03 E-value=1.7e-05 Score=62.08 Aligned_cols=80 Identities=23% Similarity=0.203 Sum_probs=59.6
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
..+..++..+.+.|++++|+..++++ . .+.+...+..++..+...|++++|+..++++++.+|+++.++..++.++.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 44556666777777777777777665 2 223456777888888888888888888888888888888888888888776
Q ss_pred CC
Q 035503 719 SG 720 (788)
Q Consensus 719 ~g 720 (788)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.02 E-value=2.3e-05 Score=80.07 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
...|..++.+|...|++++|+..++++++++|+++.++..++.+|...|++++|...++++++..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999999999999999999999999998764
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=9.8e-06 Score=81.90 Aligned_cols=152 Identities=9% Similarity=0.011 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhcc
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 617 (788)
...+..++..+.+.|++++|+..|+.....+.... .+...|+..++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34677889999999999999999987554221111 1223344444433221 13667788888999
Q ss_pred CcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCCHHHHHH
Q 035503 618 GLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLST-CVKSNETELAEY 693 (788)
Q Consensus 618 g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~A~~ 693 (788)
|++++|+..++++++. .| +...+..++.+|...|++++|+..|+++ ...|+. ..+..+... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988753 35 4678889999999999999999999988 344543 455555555 345577888999
Q ss_pred HHHHHHhcCCCCCc
Q 035503 694 ISEHLLQLEPDNPG 707 (788)
Q Consensus 694 ~~~~~~~~~p~~~~ 707 (788)
.|.+++...|+++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 99999999998653
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.99 E-value=2.6e-05 Score=60.88 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 669 DPDAHIIGSLLSTCVKSNE---TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
++++..+..++.++...++ .++|...++++++.+|+++.++..++..+++.|++++|+.+++++++..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4567788888888765544 799999999999999999999999999999999999999999999987653
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.93 E-value=6.8e-05 Score=64.13 Aligned_cols=111 Identities=8% Similarity=-0.056 Sum_probs=71.2
Q ss_pred cHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 035503 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYI 694 (788)
Q Consensus 619 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 694 (788)
++++|+++|++..+. + +.... |+..|...+..++|.++|+++....++..+..++..|.. .+|+++|+..
T Consensus 10 d~~~A~~~~~~aa~~-g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N---EMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455555555555432 2 11122 555555555555566666555333455666667766666 6778888888
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHh----CCCcHHHHHHHHHHHHCCC
Q 035503 695 SEHLLQLEPDNPGNYVALSNAYAA----SGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 695 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 737 (788)
++++.+. .++..+..|+.+|.. .++.++|..++++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8887765 567778888888888 7888888888888877764
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=3.1e-05 Score=63.31 Aligned_cols=67 Identities=15% Similarity=0.071 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 671 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+...|..++..+...|++++|+..++++++.+|+++.++..++.+|...|++++|...++++++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999999999999999999999999999999999999999987653
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.84 E-value=0.0002 Score=77.52 Aligned_cols=154 Identities=12% Similarity=0.023 Sum_probs=124.3
Q ss_pred HhCC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc----------HHHHHHHHHhcHhhcCCCCC-cchHHHHH
Q 035503 580 AMHG-LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL----------VNEGLELFVGMFSDHQVKPS-MEHFGCVV 647 (788)
Q Consensus 580 ~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 647 (788)
.+.| ..++|++.+++++..+ +-+...|+.-..++...|+ ++++++.++++++. .|. ..+|..-.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~ 114 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRC 114 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 3344 4467899999998864 2244556666666666666 89999999999854 354 67788888
Q ss_pred HHHhhcC--ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC---
Q 035503 648 NLLSRCG--NLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSN-ETELAEYISEHLLQLEPDNPGNYVALSNAYAAS--- 719 (788)
Q Consensus 648 ~~~~~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--- 719 (788)
.++.+.| ++++|+++++++ . .+-+..+|+.-..++...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 8899999 779999999998 2 3456789999999998888 899999999999999999999999999998874
Q ss_pred -----------CCcHHHHHHHHHHHHCCC
Q 035503 720 -----------GRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 720 -----------g~~~~A~~~~~~~~~~~~ 737 (788)
++++++.+++++++...+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999988887654
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=2.8e-05 Score=81.95 Aligned_cols=116 Identities=12% Similarity=0.028 Sum_probs=91.0
Q ss_pred HHHhhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCc---hH
Q 035503 648 NLLSRCGNLDEALRVILTM---------PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQL-----EPDNPG---NY 709 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~ 709 (788)
..+..+|++++|+.+++++ +..|+. .++++|+.+|...|++++|+.++++++++ .|++|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999998776 123443 47899999999999999999999999873 566554 68
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 781 (788)
.+|+.+|..+|++++|..++++.++..... -..+||.+.++...+.+...++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~------------------lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVT------------------HGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------TCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999987643211 124599999998888887765554
No 205
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.80 E-value=7.2e-07 Score=88.83 Aligned_cols=199 Identities=10% Similarity=0.066 Sum_probs=114.5
Q ss_pred chhHhhHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcc
Q 035503 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194 (788)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 194 (788)
.+.+|..|..+..+.+.+.+|++.|=+ ..|...|..+|.+..+.|.+++-+..+...++. .-++..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHh
Confidence 455677777777777777777766643 335555677777777888887777776665543 2233444567777777
Q ss_pred cCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCC------------------------CCCcch
Q 035503 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI------------------------ARNVVA 250 (788)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~ 250 (788)
.+++.+-.+... .||..-...+.+-|...|.++.|.-+|..+. ..++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 776655333221 3455445566666777777777777666552 124556
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCC-CCchhHHHHHHHHHH
Q 035503 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM-ELDNVLGSSIINFYS 329 (788)
Q Consensus 251 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 329 (788)
|..+-.+|...+.+.-|.-+--.++- .|| -+..++..|...|.+++...+++..+ |+ .....+++.|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 66666666666666555444333331 111 12234445555666666655555544 22 234445555555555
Q ss_pred hc
Q 035503 330 KV 331 (788)
Q Consensus 330 ~~ 331 (788)
+-
T Consensus 275 KY 276 (624)
T 3lvg_A 275 KF 276 (624)
T ss_dssp SS
T ss_pred hc
Confidence 54
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.77 E-value=2.1e-05 Score=67.42 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=55.9
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcH----------HHHHHHHHhcHhhcCCCCC-cchHHHHHHH
Q 035503 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV----------NEGLELFVGMFSDHQVKPS-MEHFGCVVNL 649 (788)
Q Consensus 581 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 649 (788)
+.+.+++|++.+++..+.. +.+...+..+..++...+++ ++|+..|++++ .+.|+ ...|..++.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHHHHH
Confidence 3445566666666655543 22455555555555555543 24444444444 22333 2334444444
Q ss_pred HhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
|...|++ .|+.. ...|++++|+..|+++++++|++....
T Consensus 90 y~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 90 YTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 4433322 12210 012689999999999999999975443
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.76 E-value=7.5e-05 Score=58.25 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
...+..++..+...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45788889999999999999999999999999999999999999999999999999999998764
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.75 E-value=0.00022 Score=60.88 Aligned_cols=111 Identities=8% Similarity=-0.127 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh----cCChHH
Q 035503 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR----CGNLDE 658 (788)
Q Consensus 583 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 658 (788)
+++++|+++|++..+.| .|+.. |...|...+.+++|+++|++..+. -++..+..|+.+|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 56789999999998887 44444 666788888899999999998653 467788889999988 899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 035503 659 ALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISEHLLQLE 702 (788)
Q Consensus 659 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 702 (788)
|.++++++....++..+..+...|.. .+|.++|+..++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999998545678888899999988 899999999999998874
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.64 E-value=6.9e-05 Score=77.76 Aligned_cols=113 Identities=11% Similarity=0.139 Sum_probs=81.9
Q ss_pred HhhcCChHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCc---hHHH
Q 035503 650 LSRCGNLDEALRVILTM------PCDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQL-----EPDNPG---NYVA 711 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~~~ 711 (788)
+.+.|++++|+++++++ ...|+ ..++++++.+|...|++++|+.+++++++. .|++|. .+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44555666666655544 01122 246788888899999999999999988863 455544 6889
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 035503 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 780 (788)
|+.+|..+|++++|..+++++++.-.. .-..+||.+.+++..|.+....|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998764211 113459999999999998877765
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.62 E-value=3.7e-05 Score=79.54 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCc---hHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCcee
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQL-----EPDNPG---NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 744 (788)
.++++++.+|...|++++|+.++++++++ .|++|. .+.+|+.+|..+|++++|..+++++++.-...
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~----- 415 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA----- 415 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH-----
Confidence 46788888888889999999998888863 455544 58889999999999999999999987643211
Q ss_pred EEEECCeEEEEEcCCCCCCChHHHHHHHH
Q 035503 745 WIQIGEELHVFVACDRSHPKTEEIYATLA 773 (788)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 773 (788)
-..+||.+.+++..|+
T Consensus 416 -------------lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 416 -------------HGKDHPYISEIKQEIE 431 (433)
T ss_dssp -------------TCTTCHHHHHHHHHHH
T ss_pred -------------cCCCChHHHHHHHHHh
Confidence 1245888887777665
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.61 E-value=0.00032 Score=59.29 Aligned_cols=67 Identities=9% Similarity=-0.031 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 670 PDAHIIGSLLSTCVKSN---ETELAEYISEHLLQLE-P-DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++..+...+++++.+++ +.++|+.+++.+++.+ | ++.+.++.|+-.|++.|++++|.++++.+++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 56667777777777766 5567777777777777 6 457777777777888888888888887777654
No 212
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.55 E-value=0.0002 Score=58.89 Aligned_cols=81 Identities=14% Similarity=-0.067 Sum_probs=56.3
Q ss_pred HHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035503 622 EGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHL 698 (788)
Q Consensus 622 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (788)
+|+..|+++. ...|+ ...+..++..|.+.|++++|+..++++ .. +.+...|..++.++...|++++|+..++++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455566554 33343 555667777777777777777777766 22 234567888888888889999999999998
Q ss_pred HhcCCCC
Q 035503 699 LQLEPDN 705 (788)
Q Consensus 699 ~~~~p~~ 705 (788)
+++.|++
T Consensus 80 l~~~~~~ 86 (115)
T 2kat_A 80 LAAAQSR 86 (115)
T ss_dssp HHHHHHH
T ss_pred HHhcccc
Confidence 8887753
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.49 E-value=0.00021 Score=56.74 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=39.5
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 646 VVNLLSRCGNLDEALRVILTM-PCDP-DAH-IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 646 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
.+..+.+.|++++|++.++++ ...| +.. .|..++.++...|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 445566666666666666665 2222 344 566666666666666666666666666666666555
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.33 E-value=0.00089 Score=53.02 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=28.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 680 STCVKSNETELAEYISEHLLQLEPDNPG-NYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
..+...|++++|+..++++++.+|+++. .+..++.+|...|++++|...+++.++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3344455555555555555555555555 5555555555555555555555555443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.31 E-value=0.00087 Score=69.28 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=59.8
Q ss_pred cCcHHHHHHHHHhcHhhc--CCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 035503 617 AGLVNEGLELFVGMFSDH--QVKPS----MEHFGCVVNLLSRCGNLDEALRVILTM---------PCDPDA-HIIGSLLS 680 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~ 680 (788)
.|++++|+.++++.+... -+.|+ ..+++.|+.+|...|++++|+.+++++ +..|+. .++++|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 345555555555544321 12222 244556666666666666666666554 234554 46888999
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----cCCCCCchHH
Q 035503 681 TCVKSNETELAEYISEHLLQ-----LEPDNPGNYV 710 (788)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 710 (788)
.|..+|++++|+.+++++++ +.|++|.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999999887 4677766543
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.29 E-value=0.00074 Score=53.68 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcH
Q 035503 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631 (788)
Q Consensus 569 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 631 (788)
...|..+..+|...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455556666666666666666666665543 2234455555556666666666666666554
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.28 E-value=0.0052 Score=60.69 Aligned_cols=65 Identities=14% Similarity=-0.080 Sum_probs=33.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+.+|..++..+...|++++|...++++ ...|+...|..++..+...|++++|++.+++++.++|.
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 444444444444445555555555554 22344444444455555555555555555555555555
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.27 E-value=0.0025 Score=62.98 Aligned_cols=69 Identities=16% Similarity=0.035 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
+.++.++..+...+...|++++|+..++++++++|+ ...|..+++++.-.|++++|.+.+++.....+.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 456677888887788889999999999999999975 778889999999999999999999999887653
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.24 E-value=0.00018 Score=72.00 Aligned_cols=390 Identities=11% Similarity=0.080 Sum_probs=198.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHH
Q 035503 46 SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVF 125 (788)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (788)
.|..|..+....+.+.+|++.| ++. -|+..|..++.++.+.|.+++-.+.+..+.+. ..++.+-+.|+-+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~----~ke~~IDteLi~a 125 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFA 125 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT----CCSTTTTHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccHHHHHHH
Confidence 5888889988889999998876 332 36667889999999999998888888777654 3566777888888
Q ss_pred HhccCChHHHHHHhcc----------------------------CC------------------------CCCcccHHHH
Q 035503 126 YAKCDALDVASRLFCR----------------------------LR------------------------VKNVFSWAAI 153 (788)
Q Consensus 126 ~~~~g~~~~A~~~~~~----------------------------~~------------------------~~~~~~~~~l 153 (788)
|++.+++.+-.+.... ++ ..++.+|..+
T Consensus 126 yAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV 205 (624)
T 3lvg_A 126 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 205 (624)
T ss_dssp HHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred HHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 8888776654333211 10 1133344444
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCCh
Q 035503 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233 (788)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 233 (788)
-.+|...+.+.-|.-.--.+.- .| .-...++.-|-..|.+++-..+++..+... ....-+++-|.-.|++- ++
T Consensus 206 ~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 206 CFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp THHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CH
Confidence 4444444444444333222221 11 112223334444455555555554443211 23455666666666665 33
Q ss_pred HHHHHHHhcCCCC-----------CcchHHHHHHHHHHCCChhHHHHHH-------------HHHHHcCCCCCHHHHHHH
Q 035503 234 EEARKVFDGMIAR-----------NVVAWNSMIVGYVQNGLNEEAIRVF-------------YEMTLEGVEPTRVSVTSI 289 (788)
Q Consensus 234 ~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~-------------~~m~~~g~~p~~~t~~~l 289 (788)
++-.+-++..-.+ ....|..++-.|.+...++.|.... .+... -..|...|...
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KVaN~EiyYKA 356 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRA 356 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GCSCSHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--HcchHHHHHHH
Confidence 4444443333211 3457888888888777777664321 11111 12455555555
Q ss_pred HHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhH
Q 035503 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV 369 (788)
Q Consensus 290 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~ 369 (788)
+..|....- ..--.++.. +...+.+ +..++.+.+.|++.-....+..+...|... +
T Consensus 357 i~FYL~e~P-~lL~DLL~v-L~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~a-----------------V 412 (624)
T 3lvg_A 357 IQFYLEFKP-LLLNDLLMV-LSPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKS-----------------V 412 (624)
T ss_dssp HHHHTTSCC-TTSHHHHHH-HCTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHH-----------------H
T ss_pred HHHHHHhCh-HHHHHHHHh-ccccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHH-----------------H
Confidence 555543211 000111111 0001111 122344445555555555555555544433 3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcc------------cCChhHHH-HHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHH
Q 035503 370 ASSIVDMYAKCERIDNAKQVFNSII------------LRDVVLWN-TLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436 (788)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 436 (788)
-.++-+.|....+++.-....+... +.+..-|. .....|.+++++++++.+.++ ...|
T Consensus 413 NeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------Dkly 483 (624)
T 3lvg_A 413 NESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLY 483 (624)
T ss_dssp HHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccH
Confidence 3344444444444444333322221 12222232 233456666777777655432 1112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHH
Q 035503 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490 (788)
Q Consensus 437 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 490 (788)
.-.|.....+|+.+-|.++++-..+.| +...|.+.+-.|...=+++-++++
T Consensus 484 kDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 484 KDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 222333455666666666666665544 455566666666666666665554
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.22 E-value=0.0019 Score=66.91 Aligned_cols=98 Identities=10% Similarity=-0.026 Sum_probs=64.3
Q ss_pred hhccCcHHHHHHHHHhcHhhcC--CCCC----cchHHHHHHHHhhcCChHHHHHHHHhC---------CCCCCH-HHHHH
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQ--VKPS----MEHFGCVVNLLSRCGNLDEALRVILTM---------PCDPDA-HIIGS 677 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 677 (788)
+...|++++|+.++++++.... +.|+ ..+++.|+.+|...|++++|+.+++++ +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4455666666666666543211 2222 234556666777777777777766655 233444 46888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCchHHH
Q 035503 678 LLSTCVKSNETELAEYISEHLLQ-----LEPDNPGNYVA 711 (788)
Q Consensus 678 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 711 (788)
|+..|..+|++++|+.+++++++ ..|++|.+-..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 99999999999999999999887 46887766543
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.06 E-value=0.0025 Score=50.91 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=52.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTMP---------CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
....|+..+.+.|+++.|..+++.+- ..+...++..++.++.+.|+++.|+..++++++++|+++.+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 33455555555666666655555540 123456788999999999999999999999999999998887666
Q ss_pred H
Q 035503 713 S 713 (788)
Q Consensus 713 ~ 713 (788)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 5
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.04 E-value=0.0018 Score=61.06 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=71.4
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhC-CCcHH
Q 035503 656 LDEALRVILTM-PCDPD---AHIIGSLLSTCVK-----SNETELAEYISEHLLQLEPDN-PGNYVALSNAYAAS-GRWNE 724 (788)
Q Consensus 656 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 724 (788)
..+|...++++ ..+|+ ...|..++..|.. -|+.++|+.+|+++++++|+. ..+++.+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666665 45566 4578888888877 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHHCCCccCCc
Q 035503 725 VSQVRDIMKEKGLRKNPG 742 (788)
Q Consensus 725 A~~~~~~~~~~~~~~~~~ 742 (788)
|.+++++.+...+...|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999987765455
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.70 E-value=0.0087 Score=48.52 Aligned_cols=67 Identities=7% Similarity=-0.056 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 670 PDAHIIGSLLSTCVKSNETEL---AEYISEHLLQLE-P-DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++..+-..+++++.++++... ++.+++.++..+ | ......+.|+-.+++.|++++|.++.+.+++..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 555566666666666654444 777777777665 4 345667777777777777777777777776643
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.066 Score=61.31 Aligned_cols=166 Identities=14% Similarity=0.061 Sum_probs=106.1
Q ss_pred HHhhcCChHHHHH-HHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 035503 376 MYAKCERIDNAKQ-VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454 (788)
Q Consensus 376 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 454 (788)
.....+++++|.+ ++..+. +......++..+.+.|..++|+++.+... .-.......|++++|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHH
Confidence 3345688888887 553332 12233777788888888888887663211 12344567899999988
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCC
Q 035503 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534 (788)
Q Consensus 455 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 534 (788)
+.+.+ .+...|..+...+.+.++++.|.+.|.++.. +..+...+...++.+....+.+.+...|.
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 86544 2668899999999999999999999998753 22333334446666655555555544432
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
++....+|.+.|++++|++++ .+.+++++|..+-++
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred ------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 233344555666666666544 445677777776655
No 225
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.62 E-value=0.87 Score=49.09 Aligned_cols=113 Identities=12% Similarity=-0.011 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhH----HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 035503 584 LAVEALALFKNLQQKGIDPDSIT----FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 584 ~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 659 (788)
+.+.|..++....... ..+... ...+.......+...++...+..... ..++.......+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 6677777777765433 122222 12222233344434455555555432 123333333333334466788888
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 660 LRVILTMPCDP--DAHIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 660 ~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
...|+.++..+ ......-+++++...|+.++|...|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887775432 233344556666677787778777777764
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.60 E-value=0.042 Score=62.92 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=20.1
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
..|++++|.++.+.+. +...|..+...+.+.|+++.|++.|.+
T Consensus 664 ~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 664 KVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444332 233455555555555555555555544
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.57 E-value=0.087 Score=42.52 Aligned_cols=140 Identities=13% Similarity=0.128 Sum_probs=92.8
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 659 (788)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++..-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3466777777777666553 24445555554444444444445555544332222 234444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 660 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
...+-.+. .+.......+..+..+|.-++-.+++..++..+|-+|..+..++.+|.+.|+..+|.++++++-++|.+
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444432 234455666778889999999999999987777777999999999999999999999999999999975
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.53 E-value=0.0064 Score=51.37 Aligned_cols=88 Identities=17% Similarity=0.042 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 035503 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG---NLDEALRVILTM-PCD-P--DAHIIGSLLSTCVKSNETELAE 692 (788)
Q Consensus 620 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~ 692 (788)
...+.+.|.+.... + .++..+...+++++.+.+ +.++++.++++. ... | ....+..++-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34445555544332 2 256666667777777766 555777777666 222 4 2457778888899999999999
Q ss_pred HHHHHHHhcCCCCCchH
Q 035503 693 YISEHLLQLEPDNPGNY 709 (788)
Q Consensus 693 ~~~~~~~~~~p~~~~~~ 709 (788)
+.++++++.+|++..+.
T Consensus 92 ~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhcCCCCHHHH
Confidence 99999999999975544
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.48 E-value=0.06 Score=44.36 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 669 DPDAHIIGSLLSTCVKSN---ETELAEYISEHLLQLEPD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.|...+-..+++++.++. +..+++.+++.++...|. .....+.|+-.+++.|++++|+++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 456666667777776665 345677788888777774 45567777788888888888888888877754
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.24 E-value=0.014 Score=46.55 Aligned_cols=65 Identities=17% Similarity=0.001 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLE-------PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..-...++..+...|+++.|+.-++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4456688999999999999999999999863 2346689999999999999999999999998754
No 231
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.21 E-value=0.031 Score=43.18 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=52.5
Q ss_pred CCcchHHHHHHHHhhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 638 PSMEHFGCVVNLLSRCGN---LDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 638 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
+++..+..++.++...++ .++|..+++++ ..+| +...+..++..+...|++++|+..++++++.+|.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 456677777777754444 68888888887 3344 456777888889999999999999999999999843
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.86 E-value=0.037 Score=44.92 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 669 DPDAHIIGSLLSTCVKSN---ETELAEYISEHLLQLEPD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.|...+-..+++++.+++ +..+++.+++.+++.+|. ....++.|+-.+++.|++++|+++.+.+++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 456667777777777665 445788888888888874 46778888888999999999999988887654
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.86 E-value=3.2 Score=46.59 Aligned_cols=260 Identities=13% Similarity=0.032 Sum_probs=134.9
Q ss_pred HHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc-CC-------
Q 035503 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL-RD------- 397 (788)
Q Consensus 326 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~------- 397 (788)
-+.+..|+.++++.++......+. .+.+....-..+.-+....|.-+++..++..... .+
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~------------s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~ 449 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSR------------ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDED 449 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSC------------CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHH
T ss_pred hhhhccCchHHHHHHHHHhccccC------------CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccc
Confidence 346667788888888877654210 0001111122223333334444456666554432 22
Q ss_pred -h--hHHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCCchhHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhH
Q 035503 398 -V--VLWNTLLAAYADLGR-SGEASRLFYQMQLEGISPNIISWN--SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471 (788)
Q Consensus 398 -~--~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 471 (788)
. ..-..+.-+++-.|. -+++.+.+..++... .+...... .+...+.-.|+.+....++..+.+.. +....
T Consensus 450 ~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vr 525 (963)
T 4ady_A 450 VDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNIT 525 (963)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHH
Confidence 1 112223333333443 246667676666542 11111122 23334556788888888888775431 33333
Q ss_pred HHHH--HHHHhCCCchHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 035503 472 TTLI--SGLTQNSCGNEAILFFQEMLETGIKPSTT--TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547 (788)
Q Consensus 472 ~~li--~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (788)
..+. -++...|+.+.+..+++.+... ..|... ....+..+|+..|+.....+++..+..... .+..-...++-+
T Consensus 526 R~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~-d~VRraAViaLG 603 (963)
T 4ady_A 526 RGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN-DDVRRAAVIALG 603 (963)
T ss_dssp HHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc-HHHHHHHHHHHH
Confidence 3333 3455788999888888888763 122222 223345568888998888888888876422 222222233334
Q ss_pred HHHcCCHHHHHHHHhhCCC-CChhhHH--HHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHhH
Q 035503 548 YAKCGNIHQAKRVFDISPS-KELPVYN--AMISGYAMHGLA-VEALALFKNLQQKGIDPDSIT 606 (788)
Q Consensus 548 ~~~~g~~~~A~~~~~~~~~-~~~~~~~--~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~ 606 (788)
+...|+.+.+.++++.+.. .|+.+-. .+.-+....|.. .+|+.++..+.. .+|..+
T Consensus 604 lI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V 663 (963)
T 4ady_A 604 FVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV 663 (963)
T ss_dssp HHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence 4446666667777765443 4443322 233344444444 578888888864 445443
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.16 Score=55.63 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
...-..-|...|+++.|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3334555778899999999999999999999999999999999999999999988876
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.20 E-value=0.018 Score=54.34 Aligned_cols=64 Identities=9% Similarity=0.130 Sum_probs=37.3
Q ss_pred chHHHHHHHHhh-----cCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCC
Q 035503 641 EHFGCVVNLLSR-----CGNLDEALRVILTM-PCDP--DAHIIGSLLSTCVK-SNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 641 ~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~ 704 (788)
..|..|+..|.+ -|+.++|.+.|+++ ...| +...+...+..++. .|+.++|.+.++++++.+|.
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 344455555555 25666666665555 2333 24455555665555 37777777777777777666
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.18 E-value=1.4 Score=38.15 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=54.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHH
Q 035503 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521 (788)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 521 (788)
.....|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+... +..+.-.|...|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 3456677777777666551 556677777777777777777777766542 2223333444555555
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhh
Q 035503 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563 (788)
Q Consensus 522 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (788)
-..+-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444443332 22233334445555555555443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.17 E-value=0.18 Score=40.85 Aligned_cols=90 Identities=17% Similarity=-0.020 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHH---HHHHHHhCCC-C-C--CHHHHHHHHHHHHhcCCHHHHH
Q 035503 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE---ALRVILTMPC-D-P--DAHIIGSLLSTCVKSNETELAE 692 (788)
Q Consensus 620 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~-p--~~~~~~~l~~~~~~~g~~~~A~ 692 (788)
...+.+.|.+.... + .|+..+-..+++++.+.....+ ++.++++.-. . | .-.....++-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444445544332 2 2666666677777777776655 6677766622 2 3 2235666777899999999999
Q ss_pred HHHHHHHhcCCCCCchHHH
Q 035503 693 YISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 693 ~~~~~~~~~~p~~~~~~~~ 711 (788)
+.++.+++.+|++..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999997655443
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.33 E-value=0.18 Score=41.81 Aligned_cols=101 Identities=9% Similarity=0.083 Sum_probs=54.2
Q ss_pred CCHhHHHHHHHHhhccCcH------HHHHHHHHhcHhhcCCCCCcc-hHHHHHHH------HhhcCChHHHHHHHHhCC-
Q 035503 602 PDSITFTNILNACSHAGLV------NEGLELFVGMFSDHQVKPSME-HFGCVVNL------LSRCGNLDEALRVILTMP- 667 (788)
Q Consensus 602 p~~~~~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~- 667 (788)
-|..+|-..+....+.|++ ++.++.|+++.. .++|+.. .+...+.. +...++.++|.++|+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3667777777777777888 777888887765 4556521 11111111 123355555555555541
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 668 -CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 668 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
.+.=+..|...+.--.++|+.+.|++++.+++.+.|.
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 1111344444444445555555555555555555555
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.04 E-value=9.8 Score=42.77 Aligned_cols=268 Identities=13% Similarity=0.030 Sum_probs=130.0
Q ss_pred HHHHcCChhHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------CCChhhHHHHHHH
Q 035503 407 AYADLGRSGEASRLFYQMQLEG--ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV-------QPNLITWTTLISG 477 (788)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-------~~~~~~~~~li~~ 477 (788)
+....|+.++++.++...+..+ -.+....-..+.-+...+|..+++..++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556777777777666544311 011122233334445566665667776666533210 0112222333334
Q ss_pred HHhCCCc-hHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH--HcC
Q 035503 478 LTQNSCG-NEAILFFQEMLETGIKPSTT--TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA--KCG 552 (788)
Q Consensus 478 ~~~~g~~-~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g 552 (788)
+.-.|.- +++.+.+..++...- +... ....+...+.-.|+.+....++..+.... +..+...++.+++ -.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 4444433 466666766665321 1111 11122223445666666677776666532 3334443444333 556
Q ss_pred CHHHHHHHHhhCCC-CChh-hHH---HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 553 NIHQAKRVFDISPS-KELP-VYN---AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 553 ~~~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
+.+.+..+.+.+.. .++. -|. ++.-+|+-.|+.....++++.+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 66666666555432 3332 222 34556777788766666888877632 222222222222344456655556666
Q ss_pred HhcHhhcCCCCCcchHHHHHHHHhhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHH
Q 035503 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNL-DEALRVILTMPCDPDAHIIGSLLST 681 (788)
Q Consensus 628 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~ 681 (788)
+.+... ..|..+.-..++-+....|.. .+|.+.+..+..++|..+-...+.+
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 555332 233333333444444444443 6777777777666666554443333
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.80 E-value=3 Score=36.10 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=21.2
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
.+|+++.|.++.+.+ .+...|..|......+|+++-|++.|.+
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 445555555444433 2334455555555555555555555554
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.47 E-value=5.7 Score=38.25 Aligned_cols=165 Identities=7% Similarity=0.056 Sum_probs=84.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHH----HHHHHHhCCCCCCHHHHHHHHHHh
Q 035503 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL----FFQEMLETGIKPSTTTITCALSAC 513 (788)
Q Consensus 438 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~~~~p~~~~~~~ll~~~ 513 (788)
++..-|.+.+++++|++++..-. ..+.+.|+...|.+ +++-..+.+++++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444666666666666654321 11233344333333 233334445566665555555554
Q ss_pred hccCc-----hHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC---C
Q 035503 514 TDVAS-----LRNGRAIHGYLIRHD--LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH---G 583 (788)
Q Consensus 514 ~~~~~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---g 583 (788)
..... ..-..+...+..+.+ ..-++..+..++..|.+.|++.+|...|-.....+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 33221 111222223333332 3357889999999999999999999888633322444444443333322 3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHh
Q 035503 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 584 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 632 (788)
...++--.. -..++ .|.-.|+...|..+++...+
T Consensus 183 ~~~e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFF--------------SRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 332221111 11122 24566788888888776644
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.71 E-value=0.7 Score=39.30 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=19.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCCC
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTMPC 668 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 668 (788)
.+.-..+..+|.+.|+.++|+.+++.++.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 34444667777777777777777777753
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.37 E-value=0.97 Score=37.58 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=60.6
Q ss_pred cCChhHHHHHHHHHHHcCCh------hHHHHHHHHHHHcCCCCchh----HHHHHHHH---HHhcCCHHHHHHHHHHhhh
Q 035503 395 LRDVVLWNTLLAAYADLGRS------GEASRLFYQMQLEGISPNII----SWNSVILG---FLRNGQMNEAKDMFLQMQS 461 (788)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~m~~~~~~~~~~----~~~~ll~~---~~~~g~~~~A~~~~~~~~~ 461 (788)
..|..+|-..+...-+.|+. ++..++|+++... ++|+.. .|..+.-- +...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44777888888888878888 7888888888775 555421 12111111 2234666666777766644
Q ss_pred CCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 035503 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498 (788)
Q Consensus 462 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (788)
.+-.. ...|-....--.++|+...|..++.+.+..+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 32121 4455555555556666666666666666544
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.91 E-value=9.7 Score=36.94 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=89.5
Q ss_pred hhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHhc
Q 035503 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF----YEMTLEGVEPTRVSVTSILSASA 294 (788)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 294 (788)
++.++..-|.+.+++++|.+++-. -...+.+.|+...+-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344556668899999999988643 234566778877666555 55566789999999988988887
Q ss_pred CcCChh-----HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 035503 295 NLDALD-----EGKQAHAVAVING--MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363 (788)
Q Consensus 295 ~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 363 (788)
....-+ -......+-.+.| ..-|......+...|.+.+++.+|+.-|---.++++..+..++..|...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 765422 1223333344444 33467788889999999999999999885322222345555555555544
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.70 E-value=0.88 Score=49.97 Aligned_cols=54 Identities=9% Similarity=-0.066 Sum_probs=47.2
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 035503 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565 (788)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (788)
.-|...|+++.|..+.++++..-| .+...|..|+.+|...|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 346678899999999999999888 788899999999999999999999998876
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.08 E-value=11 Score=36.18 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=88.1
Q ss_pred hhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHhc
Q 035503 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV----FYEMTLEGVEPTRVSVTSILSASA 294 (788)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 294 (788)
.+.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++.+.+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445566678888999999988643 23456678887776665 455556789999998888888876
Q ss_pred CcCCh-----hHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 035503 295 NLDAL-----DEGKQAHAVAVINGM--ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362 (788)
Q Consensus 295 ~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 362 (788)
....- +-......+..+.|- .-++..+..+...|.+.|++.+|+.-|-.-...++..+..++..+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 64322 223333333334432 246778899999999999999999987633323455555555554443
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.00 E-value=5.8 Score=39.81 Aligned_cols=160 Identities=11% Similarity=0.073 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHhHH---
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS--------KELPVYNAMISGYAMHG-LAVEALALFKNLQQKGIDPDSITF--- 607 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~--- 607 (788)
....|+..|.+.|+.++..+++..... +.......+++.+.... ..+.-.++..+.++-. ..+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 344566677777777777666665443 11123445555554432 2333333333333211 0111222
Q ss_pred ---HHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCCHH
Q 035503 608 ---TNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTM-------PCDPDAH 673 (788)
Q Consensus 608 ---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~ 673 (788)
.-++..|...|++.+|.+++.++.+...-..+ .+.+..-+.+|...|++.++...+.++ ..+|...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 13455666777777777777766554322112 233345556666777777776666555 1222221
Q ss_pred H--HHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 035503 674 I--IGSLLSTCV-KSNETELAEYISEHLLQ 700 (788)
Q Consensus 674 ~--~~~l~~~~~-~~g~~~~A~~~~~~~~~ 700 (788)
. ...-+-.+. ..+++..|-..|-++++
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 1 111122244 56777777666665553
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.36 E-value=4 Score=33.67 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=52.3
Q ss_pred CCCcchHHHHHHHHhhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 637 KPSMEHFGCVVNLLSRCGNLD---EALRVILTM-PCDP--DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 637 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
.|+..+-..+++++.+....+ +++.+++++ ...| .-....-++-++.+.|++++|++..+.+++.+|++..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 466666667777777776544 455666555 2223 234566677789999999999999999999999974443
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.06 E-value=1.7 Score=37.00 Aligned_cols=126 Identities=15% Similarity=0.112 Sum_probs=69.2
Q ss_pred CCCCch--hHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCh-------hhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 035503 428 GISPNI--ISWNSVILGFLRNGQMNEAKDMFLQMQSL-GVQPNL-------ITWTTLISGLTQNSCGNEAILFFQEMLET 497 (788)
Q Consensus 428 ~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (788)
|+.|.. .++-.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++.+|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444443 34445566788889999988888876322 122332 24556678888899999999999887542
Q ss_pred C-CCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 035503 498 G-IKPSTT-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566 (788)
Q Consensus 498 ~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (788)
. .-+... +...+. . . ..... ......+..+-..+..+|.+.+++++|+.+++.++.
T Consensus 93 ~k~l~k~~s~~~~~~-~--~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG-N--S-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHhcCCCcccccc-c--c-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1 111111 110000 0 0 00000 001113445667788899999999999999988875
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.79 E-value=0.75 Score=46.70 Aligned_cols=61 Identities=15% Similarity=0.025 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
+...++..+...|++++|+..++.++..+|-+...|..|..+|.+.|+..+|.+.|+....
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455677788899999999999999999999999999999999999999999999888743
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.51 E-value=1.9 Score=35.06 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=51.3
Q ss_pred CCCcchHHHHHHHHhhcCCh---HHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 035503 637 KPSMEHFGCVVNLLSRCGNL---DEALRVILTM-PCDPD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 637 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
.|+..+--.+++++.+.... .+++.+++++ ...|. -..+.-++-++.+.|+++.|++..+.+++.+|++..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 35556666777777776654 3455565555 22232 346777788899999999999999999999999755443
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.17 E-value=22 Score=36.56 Aligned_cols=167 Identities=12% Similarity=0.061 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCC--hhh
Q 035503 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPN-----IISWNSVILGFLRNGQMNEAKDMFLQMQS----LGVQPN--LIT 470 (788)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~g~~~~--~~~ 470 (788)
..+...+...|++.+|.+++..+...-...+ ...+...+..|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4567778888888888888888765421222 23566677788889999999888888632 211222 244
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhC-CCCCCHHHHHH----HHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITC----ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
+...+..+...+++.+|...|.+.... ....|...+.. ++.+..-.+....-..+..........++...+..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 566777778888999988888877642 11122222221 1111111221122222222222222224566778888
Q ss_pred HHHHHc--CCHHHHHHHHhhCCCCC
Q 035503 546 DMYAKC--GNIHQAKRVFDISPSKE 568 (788)
Q Consensus 546 ~~~~~~--g~~~~A~~~~~~~~~~~ 568 (788)
.+|... .+++...+.|.....++
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHHHhchHhhhHHHHHHHHHHhccc
Confidence 888764 56888888887665543
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.33 E-value=25 Score=36.14 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=56.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC---HhHHHHHHHHhhccCcHHHHHHHHHhcHhh-cCCCCC----cch
Q 035503 573 NAMISGYAMHGLAVEALALFKNLQQK--GIDPD---SITFTNILNACSHAGLVNEGLELFVGMFSD-HQVKPS----MEH 642 (788)
Q Consensus 573 ~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~p~----~~~ 642 (788)
..|...|...|++.+|.+++.++... +..+. ...+...++.|...+++..|..+++++... ....+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45666777777777777777776532 21111 123444555677788888888777775321 112222 233
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
+...+..+...+++.+|...|.++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 447777777788888887766555
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.29 E-value=22 Score=34.43 Aligned_cols=83 Identities=8% Similarity=0.023 Sum_probs=48.0
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 035503 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613 (788)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 613 (788)
+.-++.....++..|.+.+++.+|...|-...++.+..+..++.-+...+...+ ++......++ .
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~ 196 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-P 196 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-H
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-H
Confidence 446788999999999999999999998853222223455444433332222111 1112222222 2
Q ss_pred hhccCcHHHHHHHHHhcH
Q 035503 614 CSHAGLVNEGLELFVGMF 631 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~ 631 (788)
|.-.++...|...++...
T Consensus 197 yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 197 YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 555677777777665554
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.72 E-value=12 Score=44.20 Aligned_cols=134 Identities=6% Similarity=-0.086 Sum_probs=69.6
Q ss_pred cHHHHHHHhcccCCchHHHHHHHHHHHHcCCCch----hhhhHHHHHhHhcCChHHHHHHHhcCCCCC--cchHHHHHHH
Q 035503 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV----FVASSLIDMYGKCGDLEEARKVFDGMIARN--VVAWNSMIVG 257 (788)
Q Consensus 184 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~ 257 (788)
.|..++..+.+.+.++.+.++-...++..-+.+. ..|..+.+.+...|++++|...+-.++... ......|+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3556666666677777777666666655422221 245666666677777777766665543221 1233334444
Q ss_pred HHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChh
Q 035503 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING--MELDNVLGSSIINFYSKVGLLE 335 (788)
Q Consensus 258 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 335 (788)
.+..|..+.-+. +--.|..++...++....+.. ....+..|..|=..+...|++.
T Consensus 981 lce~~~~~~L~~-----------------------lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR 1037 (1139)
T 4fhn_B 981 LTKQGKINQLLN-----------------------YSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYR 1037 (1139)
T ss_dssp HHHHCCHHHHHH-----------------------HTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTS
T ss_pred HHhCCChhhhhC-----------------------CCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChH
Confidence 444333222111 112344455555554433322 1222345677777778888887
Q ss_pred HHHHH
Q 035503 336 DAEVV 340 (788)
Q Consensus 336 ~A~~~ 340 (788)
+|-.+
T Consensus 1038 ~AA~v 1042 (1139)
T 4fhn_B 1038 DAAAI 1042 (1139)
T ss_dssp CHHHH
T ss_pred HHHHH
Confidence 66554
No 256
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=84.25 E-value=50 Score=35.68 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=22.6
Q ss_pred HHHHhHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHH
Q 035503 223 LIDMYGKCGDLEEARKVFDGMIA---RNVVAWNSMIVGYVQ 260 (788)
Q Consensus 223 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 260 (788)
+|-.+.|+|++++|.++.++... .-...+-..+..|+.
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 55667788888888888876632 112356666666664
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.89 E-value=5.1 Score=40.46 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHh----hcCCCCCcchHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS----DHQVKPSMEHFG 644 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~ 644 (788)
...++..+...|++.+|+..+.++.... +-+...+..++.++...|+..+|++.|+++.+ +.|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456667778888888888888877653 34777888888888888998888888887543 458888766543
No 258
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.45 E-value=17 Score=29.64 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~ 464 (788)
...+..+..+...|+-+.-.+++..+... .+|+......+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34455566666677777666666664332 356666666666777777777777777766666554
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.56 E-value=15 Score=43.23 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 035503 675 IGSLLSTCVKSNETELAEYIS 695 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~ 695 (788)
|..+...+...|++++|-..+
T Consensus 941 ~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 941 THETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHHHCCSGGGGHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHH
Confidence 444455555555555544443
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.65 E-value=13 Score=28.13 Aligned_cols=85 Identities=18% Similarity=0.120 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 518 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+....||...|-+|. -.+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 45566666666555443 2222222344567889999999999888888888887764 3577888888888877776
Q ss_pred cCCCCCHhHH
Q 035503 598 KGIDPDSITF 607 (788)
Q Consensus 598 ~~~~p~~~~~ 607 (788)
+| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 4444443
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.26 E-value=14 Score=28.07 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 518 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+....||...|-+|.. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666655555443 22222222445667888888888888888888888877643 456777777777777666
Q ss_pred cCCCCCHhHH
Q 035503 598 KGIDPDSITF 607 (788)
Q Consensus 598 ~~~~p~~~~~ 607 (788)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 55 4443333
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.05 E-value=12 Score=34.80 Aligned_cols=123 Identities=13% Similarity=0.075 Sum_probs=63.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChH
Q 035503 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 657 (788)
.+.+.|..++|++....-++.. +-|...-..++..+|-.|++++|.+-++... .+.|+...-..+..-+.+ -+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~---aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVK---AA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHH---HH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHH---HH
Confidence 3456677777777777666653 3355555566667777777777777776664 334543222111111111 11
Q ss_pred HHH-HHHHhC--C-CCCCHHHHH-HHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 658 EAL-RVILTM--P-CDPDAHIIG-SLLST--CVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 658 ~A~-~~~~~~--~-~~p~~~~~~-~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.+. ++|..- + .--++..|. .++.+ ....|+.++|..+-.++++.-|..+.
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 221 122211 1 001112233 33333 33457777777777777777766544
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.74 E-value=14 Score=28.06 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=61.6
Q ss_pred cCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHH
Q 035503 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274 (788)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 274 (788)
....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+.+..-+..+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456677777777766552 33333334456788999999999999999999999987754 4678888888777777
Q ss_pred HHcCCCCCHHHH
Q 035503 275 TLEGVEPTRVSV 286 (788)
Q Consensus 275 ~~~g~~p~~~t~ 286 (788)
..+| .|....|
T Consensus 96 a~sg-~p~~q~F 106 (116)
T 2p58_C 96 ARSQ-DPRIQTF 106 (116)
T ss_dssp TTCC-CHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7665 4444444
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.71 E-value=2.6 Score=39.15 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=43.9
Q ss_pred HHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 648 NLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
..+.+.|++++|++.+... ..+.|...-..++..++..|++++|.+-++.+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3466788888888776555 334466667778888888888888888888888888884
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.57 E-value=13 Score=28.15 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=62.6
Q ss_pred cCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHH
Q 035503 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274 (788)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 274 (788)
....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+.+..-+..+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456677777777766552 33333334456789999999999999999999999987754 4788888888888788
Q ss_pred HHcCCCCCHHHH
Q 035503 275 TLEGVEPTRVSV 286 (788)
Q Consensus 275 ~~~g~~p~~~t~ 286 (788)
..+| .|....|
T Consensus 95 a~sg-~p~~q~F 105 (115)
T 2uwj_G 95 GGSS-DPALADF 105 (115)
T ss_dssp HTCS-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7776 4444444
No 266
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.81 E-value=18 Score=27.61 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcC
Q 035503 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533 (788)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 533 (788)
+...-++.+....+.|++..+...+.+|.+.+++..|.++++-+...-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 455566666666677777777777777777777777777777665543
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.20 E-value=10 Score=28.98 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 035503 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325 (788)
Q Consensus 263 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 325 (788)
+.-+..+-++.+....+.|++......+++|.+.+++..|..+++.++... .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 344666677777777889999999999999999999999999998877653 22244455544
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.09 E-value=10 Score=38.89 Aligned_cols=94 Identities=7% Similarity=-0.034 Sum_probs=58.3
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCc----h
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTMP-----CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP--DNPG----N 708 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~----~ 708 (788)
......++..|.+.|++++|.+.+.++. ...-...+..+++.+...+|+..+...++++..... .++. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3455567777777777777777777661 222334666677777777788777777777755321 1222 2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 709 YVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 709 ~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
...-|.++...+++.+|.+.|-.+.
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHh
Confidence 2233445666777777777766543
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=70.13 E-value=39 Score=27.41 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
+...-++.+...++.|++..+...+.+|.+.+++..|..+++-+..+-- +...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~-~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-CchhhHHHHH
Confidence 4455566666666777777777777777777777777777776655432 2233444443
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.05 E-value=21 Score=36.47 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHhHHH
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPS------KELPVYNAMISGYAMHGLAVEALALFKNLQQK---GIDPDSITFT 608 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~ 608 (788)
......++..|.+.|++++|.+.|.++.. .-...+-..+..+...+++..+...+++.... +-.|+...-.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 44677889999999999999999876643 22346677888888889999999888886542 3233332211
Q ss_pred --HHHHHhhccCcHHHHHHHHHhcHhhc
Q 035503 609 --NILNACSHAGLVNEGLELFVGMFSDH 634 (788)
Q Consensus 609 --~ll~~~~~~g~~~~A~~~~~~~~~~~ 634 (788)
.-+..+...+++.+|...|-++...+
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11123556788888888888776554
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.29 E-value=26 Score=28.38 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 035503 264 NEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSII 325 (788)
Q Consensus 264 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 325 (788)
.-+..+-++.+...++.|++......+++|.+.+|+..|..+++.++..- .+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 34556667777777889999999999999999999999999999887653 22344555544
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.89 E-value=1.1e+02 Score=30.49 Aligned_cols=291 Identities=11% Similarity=0.040 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCC---hhhHHHHHHHHHhC-CCchHHHHHHHHHHhCCCCCCHHHH-
Q 035503 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSL-GVQPN---LITWTTLISGLTQN-SCGNEAILFFQEMLETGIKPSTTTI- 506 (788)
Q Consensus 433 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~~~---~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~- 506 (788)
......|...|.+.|+.++..+++...... +..|- ......+++.+... +..+.-.++..+..+.. +-+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345667888899999999888888877443 11111 12244555555543 23333344444444311 1111222
Q ss_pred -----HHHHHHhhccCchHHHHHHHHHHHHc--CCC---CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC------CChh
Q 035503 507 -----TCALSACTDVASLRNGRAIHGYLIRH--DLC---LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS------KELP 570 (788)
Q Consensus 507 -----~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~ 570 (788)
..++..|...|++.+|..++..+.+. ... .-..++..-+++|...+++.++...+..... +++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 14555666777777776666666652 111 1122344455666667777766666643221 2221
Q ss_pred h----HHHHHHHHH-hCCCHHHHHHHHHHHHHc-C-C-CCC---HhHHHHHHHHhhccCcHHHHHHHHH-hcHhhcCCCC
Q 035503 571 V----YNAMISGYA-MHGLAVEALALFKNLQQK-G-I-DPD---SITFTNILNACSHAGLVNEGLELFV-GMFSDHQVKP 638 (788)
Q Consensus 571 ~----~~~l~~~~~-~~g~~~~A~~~~~~m~~~-~-~-~p~---~~~~~~ll~~~~~~g~~~~A~~~~~-~~~~~~~~~p 638 (788)
. ...-+-.+. ..+++.+|...|-+..+. . . .|. ...|..+.. .. .++..+--.++. .....+ ..|
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll-~~~r~el~~~l~~~~~~~~-~~p 254 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IM-LGQSDDVNQLVSGKLAITY-SGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HH-TTCGGGHHHHHHSHHHHTT-CSH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HH-cCCHHHHHHHhcccccccc-CCc
Confidence 1 111223344 567777776666554321 0 0 111 111222211 11 122212112111 111111 223
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 639 SMEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
....+..++.+| +.+++.+...++.... ...|......+-..+.. --+..+.++ ..|-..-....++..+
T Consensus 255 ei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i--~~pYsrIsl~~iA~~l 326 (394)
T 3txn_A 255 DIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT-----MLEQNLCRI--IEPYSRVQVAHVAESI 326 (394)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----HHHHHHHHH--HTTCSEEEHHHHHHHH
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----HHHHHHHHH--hHhhceeeHHHHHHHH
Confidence 333344444443 4456666666655542 22343221111111100 001112222 2466666677777666
Q ss_pred HhCCCcHHHHHHHHHHHHCCC
Q 035503 717 AASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 717 ~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.- ..+++...+-+|+..|.
T Consensus 327 ~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 327 QL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp TC--CHHHHHHHHHHHHHTTS
T ss_pred Cc--CHHHHHHHHHHHHHCCC
Confidence 43 67899999999998874
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.72 E-value=1.5e+02 Score=31.69 Aligned_cols=396 Identities=11% Similarity=0.025 Sum_probs=193.3
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChH
Q 035503 54 LSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALD 133 (788)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 133 (788)
..+.|+...+..+...+...-+.|- ..|..|...+. ..... ++...+.+..+ .|....+-+.-+..+.+.+++.
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l~-~~~~~---ev~~Fl~~~~~-~p~~~~Lr~~~l~~l~~~~~w~ 89 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDLM-NQPAV---TVTNFVRANPT-LPPARTLQSRFVNELARREDWR 89 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTGG-GCCHH---HHHHHHHHCTT-CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCcc-cCCHH---HHHHHHHHCCC-ChhHHHHHHHHHHHHHhCCCHH
Confidence 4566788777776555532111111 14444444332 11232 44444443321 3444455666677788899999
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHH--HHHHHHHH
Q 035503 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRA--VHGYVLKV 211 (788)
Q Consensus 134 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~ 211 (788)
.....+.. +..+...-.....+....|+..+|......+-..|.. .......++..+.+.|.+..... =++.+...
T Consensus 90 ~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~ 167 (618)
T 1qsa_A 90 GLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKA 167 (618)
T ss_dssp HHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Confidence 99987776 4334444555677778889888888877777655522 23344555555554444433211 11111111
Q ss_pred c-----------CCCch-hhhhHHHHHhHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHHCCChhHHHHHHHHHHH
Q 035503 212 G-----------FDGCV-FVASSLIDMYGKCGDLEEARKVFDGMIARNVV---AWNSMIVGYVQNGLNEEAIRVFYEMTL 276 (788)
Q Consensus 212 ~-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~ 276 (788)
| ++++. .....++..+. +...+....... .++.. .+...+.-+.+ .+.+.|..+|.....
T Consensus 168 ~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~ 242 (618)
T 1qsa_A 168 GNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQ 242 (618)
T ss_dssp TCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhh
Confidence 1 11111 01111111111 111222222111 11111 11111222223 377889888888865
Q ss_pred cCCCCCHHHHHHHH----HHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhH
Q 035503 277 EGVEPTRVSVTSIL----SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352 (788)
Q Consensus 277 ~g~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 352 (788)
.. ..+......+- ......+...++...+....... .+.....-.+....+.|+++.|...|+.|.....
T Consensus 243 ~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~--- 316 (618)
T 1qsa_A 243 AQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK--- 316 (618)
T ss_dssp HT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG---
T ss_pred cc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc---
Confidence 43 22333332222 23334442444555555444332 2222333344455677999999999998876432
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 035503 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN 432 (788)
Q Consensus 353 ~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 432 (788)
......--+...+...|+.++|..+|..+..+. +|-.++. ..+.|..-.. . ...+.+.
T Consensus 317 ------------~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~--~fYg~lA-a~~Lg~~~~~-~------~~~~~~~ 374 (618)
T 1qsa_A 317 ------------EKDEWRYWQADLLLERGREAEAKEILHQLMQQR--GFYPMVA-AQRIGEEYEL-K------IDKAPQN 374 (618)
T ss_dssp ------------GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SHHHHHH-HHHTTCCCCC-C------CCCCCSC
T ss_pred ------------ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC--ChHHHHH-HHHcCCCCCC-C------CCCCChh
Confidence 122234456667778899999999888886542 3333221 1222221000 0 0000010
Q ss_pred -hh-----HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHH
Q 035503 433 -II-----SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493 (788)
Q Consensus 433 -~~-----~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (788)
.. .-...+..+...|....|...+..+... . +......+.......|.++.++.....
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 00 1112344566778888888877776543 1 333333444455566777666654443
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.65 E-value=54 Score=28.90 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 688 TELAEYISEHLLQL--EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 688 ~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
...+..+|+.+... .-..+..|...+..+...|++.+|..+|+.-++.+.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44555555554432 233444555555555555666666655555555443
No 275
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=62.95 E-value=3.1 Score=21.35 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCc
Q 035503 765 TEEIYATLALLGMHVRLVSKV 785 (788)
Q Consensus 765 ~~~~~~~l~~~~~~~~~~~~~ 785 (788)
+.++|++++.+.+.+++-..-
T Consensus 3 adelykeledlqerlrklrkk 23 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 568999999998888775443
No 276
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=54.67 E-value=34 Score=35.59 Aligned_cols=56 Identities=23% Similarity=0.094 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
.++...+-...++.|...|.++..+.|++...|+.||.+....|+.-+|.-+|-+.
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 34444444555667777777777777777777777777777777666665444433
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.84 E-value=1.3e+02 Score=26.60 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=36.3
Q ss_pred CChhHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 035503 412 GRSGEASRLFYQMQLEGISPN-IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466 (788)
Q Consensus 412 g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~ 466 (788)
+...++.++|..|...|+... ..-|......+...|++.+|.++|+.-.+.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335577777877777766543 3455666666777777777777777766664444
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.50 E-value=97 Score=28.76 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=9.3
Q ss_pred HHhHhcCChHHHHHHHhc
Q 035503 225 DMYGKCGDLEEARKVFDG 242 (788)
Q Consensus 225 ~~~~~~g~~~~A~~~~~~ 242 (788)
...+..|+.+-...+++.
T Consensus 153 ~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 334445555555555544
No 279
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=50.07 E-value=1.2e+02 Score=25.82 Aligned_cols=84 Identities=17% Similarity=0.044 Sum_probs=53.4
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--c---------------CCCCCc-hH
Q 035503 648 NLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ--L---------------EPDNPG-NY 709 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---------------~p~~~~-~~ 709 (788)
-.+.-.|....++-.+..... ..+..+.. -.|...+++..|+..++++++ . +|.|.+ .+
T Consensus 41 I~LyyngEY~R~Lf~L~~lNT-~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy 117 (242)
T 3kae_A 41 IVLYLNGEYTRALFHLHKLNT-CTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE 117 (242)
T ss_dssp HHHHHTTCHHHHHHHHHTCCB-HHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH
T ss_pred hhhhhcchHhHHHHHHHhcch-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH
Confidence 344556777777776665521 01111211 234567888888888888883 2 233333 46
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
..++.++...|+.+||+..+..--.
T Consensus 118 ~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 118 SLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 6789999999999999999876433
No 280
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=49.80 E-value=81 Score=27.51 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=43.3
Q ss_pred hHHHHHHHHhCCCCCCH--HHH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHH
Q 035503 656 LDEALRVILTMPCDPDA--HII-----GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 656 ~~~A~~~~~~~~~~p~~--~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
++.|+.+++.+...-+. ... ......|.+.|.+++|.+++++.+..+|.+...-..|..+-.+.+.+..-.+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 46677777777433231 111 1234568899999999999999998888877776666666666655554444
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.79 E-value=1.3e+02 Score=28.88 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=44.0
Q ss_pred HHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 661 RVILTMPCDPDAH--IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 661 ~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.+|......|.+. ++...+....+.+++..|-.+.++++++.|... ..++|.+++...-+.
T Consensus 194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 3455556666553 566777778999999999999999999999622 235577777665544
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.25 E-value=1.2e+02 Score=25.33 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=31.7
Q ss_pred HHHHHHHHHhc--CCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 691 AEYISEHLLQL--EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 691 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
+..+|+.+... .-..+..|...+..+...|++.+|..+|+.-++.+.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 55666666553 3445566777777777777777777777776666543
No 283
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=47.27 E-value=1.3e+02 Score=25.55 Aligned_cols=83 Identities=14% Similarity=0.164 Sum_probs=52.2
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--C--------------CHh-HHH
Q 035503 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID--P--------------DSI-TFT 608 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p--------------~~~-~~~ 608 (788)
-++.-.|.+..++-++..+..-...-|.. -+|-+.+++..|+..++.+++..+. | |.. -++
T Consensus 41 I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 41 IVLYLNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp HHHHHTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred hhhhhcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 34556788888887776554322222333 3567788999999988888854433 2 222 244
Q ss_pred HHHHHhhccCcHHHHHHHHHhc
Q 035503 609 NILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 609 ~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
.+...|.+.|+.++|+.++..-
T Consensus 119 l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhhhHhhhh
Confidence 4445677788888888877644
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.14 E-value=1.5e+02 Score=34.06 Aligned_cols=129 Identities=11% Similarity=-0.036 Sum_probs=71.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcC
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 654 (788)
++..+...|.++-|.++..- .+-++..-..+..+|...|++++|..+|+++.. |+........
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~---------- 878 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFA---------- 878 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCG----------
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCccccc----------
Confidence 45566667776655443322 233433333455677888888888888887642 4433221110
Q ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCc----hHHHHHHHHHhCC
Q 035503 655 NLDEALRVILTMPCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQL-EPDNPG----NYVALSNAYAASG 720 (788)
Q Consensus 655 ~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~----~~~~l~~~~~~~g 720 (788)
.......++...+.. .....|..++..+.+++-++.++.+.+.+++. .++++. .|..+..+....|
T Consensus 879 ~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 879 VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 001111222222211 12347778888888999999999999999874 444443 4555555554443
No 285
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.05 E-value=1.2e+02 Score=27.69 Aligned_cols=94 Identities=11% Similarity=-0.060 Sum_probs=52.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcc-------cHHHHHHHh--ccCCCchhHHHHHHHHHHhCC-------CCCC
Q 035503 51 ISSLSKEKQIREAVDLLTEMKCRNFQIGPE-------IYGELLQGC--VYKRDMYTGQQIHARILKNGD-------FFAR 114 (788)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~-------~~~~ 114 (788)
+...++.|+.+....+++.+...|..++.. -.+.|..+. ++.|+.+-+..+.+.-...+. ....
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 444567889998888888877777666533 234444443 266777777776665433210 0000
Q ss_pred chhHhhHHHHHHhccCChHHHHHHhccCCC
Q 035503 115 NEYVETKLVVFYAKCDALDVASRLFCRLRV 144 (788)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 144 (788)
........+...+..|+.+-+.-+++.-..
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 000122334445566777777777765433
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.51 E-value=1.5e+02 Score=25.09 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=28.4
Q ss_pred HHHHHHHHHh--cCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 691 AEYISEHLLQ--LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 691 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
+..+|+.+.. +.-..+..|...+..+...|++.+|..+|+.-++.+..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4445555544 33445556666666677777777777777766665543
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.34 E-value=41 Score=34.83 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=45.0
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCCCCC----CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTMPCDP----DA---HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
...++.++..|...+.++.|..++.+...+. +. ....-+++.+..++++.+|.+.+..++...|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 3455577777888888888888888874321 11 1222345566777888888888888888777654
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.96 E-value=59 Score=33.69 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=44.9
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc--chHH-HHHHHHhhcCChHHHHHHHHhC
Q 035503 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM--EHFG-CVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 604 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~-~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
...++.+++.|.+.+.++.|..+..+..--....++. ..|. .++..+.-.+++.+|.+.+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4567888889999999999999998773100001111 2233 6677888899999999998876
No 289
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.11 E-value=1.2e+02 Score=27.72 Aligned_cols=89 Identities=8% Similarity=-0.193 Sum_probs=45.9
Q ss_pred HHHHcCCCchHHHHHHHHHHHCCCCCCccc-------HHHHHHHh--cccCCchHHHHHHHHHHHHc---------CC-C
Q 035503 155 GLNCRVGLSEKALIGFVEMQEDGVSPDNFV-------LPNVLKAC--GALGWVGFGRAVHGYVLKVG---------FD-G 215 (788)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~ll~~~--~~~~~~~~a~~~~~~~~~~~---------~~-~ 215 (788)
...++.|+.+....+++.+.+.|..++... .+.+..++ ++.|+.+-+..+++.....+ +. .
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 344556777776667776666655544222 23333332 25667766666665543311 00 0
Q ss_pred chhhhhHHHHHhHhcCChHHHHHHHhcCC
Q 035503 216 CVFVASSLIDMYGKCGDLEEARKVFDGMI 244 (788)
Q Consensus 216 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 244 (788)
|..-. ..+...+..|+.+-+.-+++.-.
T Consensus 90 d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 90 YYRGQ-TALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp SEESB-CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccCCC-CHHHHHHHcCCHHHHHHHHhCCC
Confidence 11222 23444566788777777776543
No 290
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.28 E-value=3.1e+02 Score=27.92 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=70.5
Q ss_pred HHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 035503 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604 (788)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 604 (788)
.+.+.|.+-....|..-.+.+...|++++|.++--..+. ++..+.+.+-.+=..-|+..--+.+|..+.+.| ..+.
T Consensus 351 lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~ 429 (494)
T 1bpo_A 351 MAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNK 429 (494)
T ss_dssp HHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCH
T ss_pred HHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccch
Confidence 344556655566666667778888888888888766554 333444333332233344444566666666665 3444
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 669 (788)
.--.-+.+.-...|+.+-..+++ ++.++..+.+ |++.. +..+..-|+.+|.++...
T Consensus 430 ~ESlEl~r~vL~q~r~~llekWl----~e~KL~~SEe----LGDlv-k~~d~~LAl~IY~~a~~~ 485 (494)
T 1bpo_A 430 YESLELCRPVLQQGRKQLLEKWL----KEDKLECSEE----LGDLV-KSVDPTLALSVYLRANVP 485 (494)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH----HHTCSCCCHH----HHHHH-HHHCSHHHHHHHHHHCCC
T ss_pred HHhhHHhHHHHhccHHHHHHHHH----hcCCccccHH----hHhhh-hhcCHHHHHHHHHHcCCc
Confidence 33333444444555554444433 3324444432 33332 444666666666666433
No 291
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=37.23 E-value=2.5e+02 Score=27.22 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=34.8
Q ss_pred hhHHHHHhHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHHHCC-ChhHHHHHHHHHHHcCCC
Q 035503 220 ASSLIDMYGKCGDLEEARKVFDGMIARNV---VAWNSMIVGYVQNG-LNEEAIRVFYEMTLEGVE 280 (788)
Q Consensus 220 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~ 280 (788)
...++.-|...|+.++|...++++..|.- .....+..++-+.. .-+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 35678888888999999999988876531 11222222221211 123445666666655543
No 292
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.90 E-value=2.3e+02 Score=25.27 Aligned_cols=29 Identities=3% Similarity=0.034 Sum_probs=16.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 035503 50 QISSLSKEKQIREAVDLLTEMKCRNFQIG 78 (788)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 78 (788)
.+...++.|+.+.+..+++.+.+.+..++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 34444556666666666665555554443
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.07 E-value=2.2e+02 Score=26.59 Aligned_cols=21 Identities=5% Similarity=-0.110 Sum_probs=10.6
Q ss_pred HHHHhHhcCChHHHHHHHhcC
Q 035503 223 LIDMYGKCGDLEEARKVFDGM 243 (788)
Q Consensus 223 li~~~~~~g~~~~A~~~~~~~ 243 (788)
.+...+..|+.+-+..+++.-
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHhCC
Confidence 344445555555555555443
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.98 E-value=1.2e+02 Score=27.60 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=45.6
Q ss_pred HHHHHHCCChhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 035503 255 IVGYVQNGLNEEAIRVFYEMTLE--GVEP----TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328 (788)
Q Consensus 255 i~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (788)
+..+....++++|++++++..+. ++++ +.......++.-.....-..+..+.+.+ .. ..+.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 55666677777777776665442 2221 1122222233322222222333333333 22 34445556667888
Q ss_pred HhcCChhHHHHHHHhc
Q 035503 329 SKVGLLEDAEVVFSRM 344 (788)
Q Consensus 329 ~~~g~~~~A~~~~~~~ 344 (788)
.+.|+-++|.++|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 8889999998888654
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.82 E-value=1e+02 Score=24.85 Aligned_cols=64 Identities=11% Similarity=0.181 Sum_probs=38.4
Q ss_pred hHHHHHhHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHHCCC--hhHHHHHHHHHHHcCCCCCHH
Q 035503 221 SSLIDMYGKCGDLEEARKVFDGMIARN---VVAWNSMIVGYVQNGL--NEEAIRVFYEMTLEGVEPTRV 284 (788)
Q Consensus 221 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 284 (788)
..++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 456777788888888888888876552 1233333344444332 355667777777666544433
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.33 E-value=1.3e+02 Score=26.91 Aligned_cols=20 Identities=10% Similarity=0.115 Sum_probs=11.2
Q ss_pred HHHHHhccCChHHHHHHhcc
Q 035503 122 LVVFYAKCDALDVASRLFCR 141 (788)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~ 141 (788)
.+...+..|+.+-...+++.
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred hhHHHHHcCCHHHHHHHHHc
Confidence 34444556666666666554
No 297
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=34.03 E-value=2.8e+02 Score=25.41 Aligned_cols=113 Identities=9% Similarity=0.057 Sum_probs=50.0
Q ss_pred HHHhHhcCChHHHHHHHhcCCCCCcc-------------hHHHHHHHHHHCCChhHHHHHHHHHHHc-CCCCCH---HHH
Q 035503 224 IDMYGKCGDLEEARKVFDGMIARNVV-------------AWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTR---VSV 286 (788)
Q Consensus 224 i~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~---~t~ 286 (788)
+...+..|+.+-...+++.-...+.. ..+ .+...+..|+.+-+.. +.+. |..++. .-.
T Consensus 109 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~g~ 183 (285)
T 1wdy_A 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAAEKGHVEVLKI----LLDEMGADVNACDNMGR 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHHHHHTCHHHHHH----HHHTSCCCTTCCCTTSC
T ss_pred HHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHHHHcCCHHHHHH----HHHhcCCCCCccCCCCC
Confidence 34455667777666666654332211 112 2333445566544333 3333 433322 112
Q ss_pred HHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChhHHHHHHH
Q 035503 287 TSILSASANLDALDEGKQAHAVAVINGMELDNVL--GSSIINFYSKVGLLEDAEVVFS 342 (788)
Q Consensus 287 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 342 (788)
+.+..+ +..++......+.+.+.+.|..++... ..+.+...++.|+.+-+..+++
T Consensus 184 t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 184 NALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 222222 234444444566666666665544321 1222333444555555544444
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.69 E-value=1.7e+02 Score=27.44 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=26.0
Q ss_pred HHHhHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHH
Q 035503 224 IDMYGKCGDLEEARKVFDGMI---ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285 (788)
Q Consensus 224 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 285 (788)
+...+..|+.+-+.-+++.-. .++..-++..+...+..|+. ++.+.+.+.|..++...
T Consensus 165 L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 344455566655555554321 12222222222333344543 44555566676665554
No 299
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=32.45 E-value=19 Score=18.33 Aligned_cols=23 Identities=22% Similarity=0.233 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCccC
Q 035503 765 TEEIYATLALLGMHVRLVSKVFC 787 (788)
Q Consensus 765 ~~~~~~~l~~~~~~~~~~~~~~~ 787 (788)
+.+.|++|+...+.+++...-++
T Consensus 3 ade~ykeled~qerlrk~rkklr 25 (26)
T 4g3b_A 3 ADEXYKELEDXQERLRKXRKKLR 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Confidence 56788999988888877654433
No 300
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=32.40 E-value=5.1e+02 Score=27.95 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHHHHHHHHH
Q 035503 370 ASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNTLLAAYAD 410 (788)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~ 410 (788)
.-.++-.+.++|.+++|.++.++.... -...|..++..++.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 456788889999999999999877421 11345555666553
No 301
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.40 E-value=2.5e+02 Score=24.30 Aligned_cols=175 Identities=9% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 035503 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443 (788)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 443 (788)
.++..+....+..+.+.+..+....+.+.+..+|...-...+.++...+..+....+.+.+. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALK----DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc----CCCHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHH
Q 035503 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523 (788)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 523 (788)
.+.++.+....+.+.+.+. +...-...+.++.+.++ .++...+.++.. .++...-...+.++...|..+...
T Consensus 101 ~~~~~~~~~~~L~~~l~d~----~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~~~~~ 172 (201)
T 3ltj_A 101 GQIGDERAVEPLIKALKDE----DWFVRIAAAFALGEIGD-ERAVEPLIKALK---DEDGWVRQSAADALGEIGGERVRA 172 (201)
T ss_dssp HHHCCGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHTC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHHHHH
T ss_pred HHhCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCchhHHH
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcCCH
Q 035503 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554 (788)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 554 (788)
.+...+.. ++..+-...+.++.+.+..
T Consensus 173 ~L~~~l~d----~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 173 AMEKLAET----GTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHHH----CCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHhC----CCHHHHHHHHHHHHHHHhh
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.56 E-value=2.3e+02 Score=27.02 Aligned_cols=62 Identities=8% Similarity=0.170 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcccCCh---hHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCC
Q 035503 370 ASSIVDMYAKCERIDNAKQVFNSIILRDV---VLWNTLLAAYADLGR--SGEASRLFYQMQLEGISP 431 (788)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~ 431 (788)
...++.-|...|+.++|...++++..|.- .....+..++-+.++ .+....++..+...|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 34567777777888888888887765521 122222233332222 234556666666555443
No 303
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=31.40 E-value=2.6e+02 Score=24.35 Aligned_cols=175 Identities=9% Similarity=0.062 Sum_probs=0.0
Q ss_pred CChhHHHHHHHhcCCCCchhHHHHHHHHHHcC-------------CCchhHHHHHHHHHhhcCChHHHHHHHHhcccCCh
Q 035503 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV 398 (788)
Q Consensus 332 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 398 (788)
++.+....+.+.+..++...-...+..+.+.+ .++..+....+..+.+.+..+....+.+.+..+|.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~ 95 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDG 95 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCH
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 478 (788)
..-...+.++.+.+..+....+.+.+. .++..+-...+.++.+.+..+....+...+.+. +...-...+.++
T Consensus 96 ~vr~~a~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~vr~~a~~aL 167 (211)
T 3ltm_A 96 WVRQSAAVALGQIGDERAVEPLIKALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALKDE----DGWVRQSAADAL 167 (211)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCC----CHHHHHHHHHHH
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 518 (788)
.+.+. .++...+.++.+ .++...-...+.++...+.
T Consensus 168 ~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC---
T ss_pred HHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhcCC
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.23 E-value=2e+02 Score=26.19 Aligned_cols=89 Identities=8% Similarity=0.023 Sum_probs=41.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc--CCCC----chhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 035503 404 LLAAYADLGRSGEASRLFYQMQLE--GISP----NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477 (788)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 477 (788)
-++.+....++++|.+++++.... +.++ +.......+..-.....-.-+..+.+.+.. .++...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 345566666677776666655432 2221 111112222222222222223333333322 2344455556667
Q ss_pred HHhCCCchHHHHHHHHHH
Q 035503 478 LTQNSCGNEAILFFQEML 495 (788)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~ 495 (788)
+.+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777665544
No 305
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.56 E-value=2.5e+02 Score=23.44 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=23.9
Q ss_pred HHHHHHHhhhCCCCCC-hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC
Q 035503 452 AKDMFLQMQSLGVQPN-LITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501 (788)
Q Consensus 452 A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (788)
+.++|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555544443222 2334444445555555555555555555544444
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.47 E-value=2.3e+02 Score=25.18 Aligned_cols=20 Identities=0% Similarity=-0.163 Sum_probs=10.2
Q ss_pred HHHHHhcCChhHHHHHHHhc
Q 035503 325 INFYSKVGLLEDAEVVFSRM 344 (788)
Q Consensus 325 ~~~~~~~g~~~~A~~~~~~~ 344 (788)
+....+.|+.+-+.-+++..
T Consensus 214 l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHhh
Confidence 34445556655555554443
No 307
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.88 E-value=1e+02 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=27.9
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHH
Q 035503 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEAL 589 (788)
Q Consensus 552 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 589 (788)
.+.+.|.++++.++.+++.+|..++.++...|...-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 45777888888888877788888888887666655443
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.25 E-value=95 Score=25.99 Aligned_cols=64 Identities=11% Similarity=0.181 Sum_probs=38.2
Q ss_pred hHHHHHhHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHHCCC--hhHHHHHHHHHHHcCCCCCHH
Q 035503 221 SSLIDMYGKCGDLEEARKVFDGMIARN---VVAWNSMIVGYVQNGL--NEEAIRVFYEMTLEGVEPTRV 284 (788)
Q Consensus 221 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 284 (788)
+.++.-|...|+.++|...++++..|. ......+..++-+.+. .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 456777788888888888888876552 1233333344444322 345667777777666544333
No 309
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=28.21 E-value=48 Score=22.37 Aligned_cols=35 Identities=11% Similarity=-0.020 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHh-ccCCC
Q 035503 60 IREAVDLLTEMKCRNFQIGPEIYGELLQGC-VYKRD 94 (788)
Q Consensus 60 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~ 94 (788)
.++|.+.|.+|++..--++.-||...++.+ ++..+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 468888899888654334446899999888 65543
No 310
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.58 E-value=1.7e+02 Score=27.91 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC--hhHHHHHHHHHHHhCCCCchh
Q 035503 250 AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA--LDEGKQAHAVAVINGMELDNV 319 (788)
Q Consensus 250 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 319 (788)
..+.++.-|...|+.++|...++++...... .......+..+.-+.++ .+....++..+.+.|+-+...
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3556788888889999999999888532111 12233334444444322 345566676666666544433
No 311
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.53 E-value=2.7e+02 Score=24.39 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=36.5
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc-----hHHHHHHHHHHHHcCC
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS-----LRNGRAIHGYLIRHDL 534 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 534 (788)
.+..+++.|+-++-+|++.| .|....-..++.+....|. +..|...++.....|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 35678889999999999988 6666655666666666654 3334455555555565
No 312
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=24.98 E-value=6e+02 Score=26.41 Aligned_cols=69 Identities=12% Similarity=-0.043 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHH-hcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 668 CDPDAHIIGSLLSTCVKSNETELAEY----ISEHLL-QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 668 ~~p~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..+|......+..-+..+|-.++-+. .++.-+ +..|++......|-..|.+.|++-+|.+++-.+...+
T Consensus 174 ~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 174 KYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred cCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 34566666677777777775444222 122222 2456677778888889999999999999999888774
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.23 E-value=3.3e+02 Score=23.06 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 035503 417 ASRLFYQMQLEGISPN-IISWNSVILGFLRNGQMNEAKDMFLQMQSL 462 (788)
Q Consensus 417 a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 462 (788)
..++|..|...|+... ...|......+-..|++.+|.++|+.-.+.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4445555555544322 223333444444444444444444444444
No 314
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.61 E-value=5.9e+02 Score=25.80 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=28.7
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 518 (788)
.+.++.+.|+.++.+|++.|..|....-..+..+....|.
T Consensus 266 irgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 266 VRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 3567899999999999998877766555555555555553
No 315
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.09 E-value=2.7e+02 Score=23.17 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 035503 438 SVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 438 ~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 316
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=23.06 E-value=3.9e+02 Score=23.56 Aligned_cols=215 Identities=9% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHh
Q 035503 48 FHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYA 127 (788)
Q Consensus 48 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (788)
.+.+...++.|+.+.+..+++.=.... ..+..-.+.|..++.... .++.+.+++.|..+..........+...+
T Consensus 12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 12 RSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNH-----LEAVKYLIKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTC-----HHHHHHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCC-----HHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q ss_pred ccCChHHHHHHhccCC----CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcc--cHHHHHHHhcccCCchHH
Q 035503 128 KCDALDVASRLFCRLR----VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF--VLPNVLKACGALGWVGFG 201 (788)
Q Consensus 128 ~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a 201 (788)
..|+.+-+..+++.-+ .++...++.+..+..... .++++.+.+.|..++.. .-.+.+...+..|+.+
T Consensus 86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-- 158 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH-----VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD-- 158 (237)
T ss_dssp HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH--
T ss_pred HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH--
Q ss_pred HHHHHHHHHHcCCCchhh--hhHHHHHhHhcCChHHHHHHHhcCCCCCcc--hHHHHHHHHHHCCChhHHHHHHHHHHHc
Q 035503 202 RAVHGYVLKVGFDGCVFV--ASSLIDMYGKCGDLEEARKVFDGMIARNVV--AWNSMIVGYVQNGLNEEAIRVFYEMTLE 277 (788)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~ 277 (788)
+.+.+++.|..++..- -...+...++.|+.+-+.-+++.-...+.. .-.+-+...+..|+...++++.+.+.++
T Consensus 159 --~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 159 --IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp --HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
No 317
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.52 E-value=2.4e+02 Score=20.92 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHH
Q 035503 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586 (788)
Q Consensus 551 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 586 (788)
....+.|..+++.++.++..++..++.++...+...
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 456677777777777777777777777777766543
No 318
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.50 E-value=3.9e+02 Score=23.41 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=13.3
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 035503 50 QISSLSKEKQIREAVDLLTEM 70 (788)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~m 70 (788)
.+...++.|+.+....++..-
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHC
T ss_pred hHHHHHHhCCHHHHHHHHHhc
Confidence 355556677777776666543
No 319
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.25 E-value=4.6e+02 Score=24.06 Aligned_cols=18 Identities=0% Similarity=-0.088 Sum_probs=8.5
Q ss_pred cCChhHHHHHHHHHHHcC
Q 035503 395 LRDVVLWNTLLAAYADLG 412 (788)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g 412 (788)
.++...-...+.++...|
T Consensus 65 d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 65 DKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp CSSHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 344444444445555554
No 320
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.02 E-value=4.5e+02 Score=25.23 Aligned_cols=42 Identities=12% Similarity=0.250 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccC
Q 035503 99 QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL 142 (788)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 142 (788)
-+++.++.+.| ..+..+....++..+.+.=.++.+.++++.+
T Consensus 208 p~L~~hL~~~~--i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~ 249 (331)
T 3qye_A 208 RDLYNHLEEHE--IGPSLYAAPWFLTMFASQFPLGFVARVFDMI 249 (331)
T ss_dssp HHHHHHHHHTT--CCGGGTSHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CChHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 35677777777 7777777888888888777788888888766
No 321
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.35 E-value=3.5e+02 Score=23.66 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=28.7
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 518 (788)
.+..+++.|+-++-+|++.|..|....-..++.+....|.
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3567888888888889888877766666666666655553
No 322
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.26 E-value=4.3e+02 Score=23.32 Aligned_cols=180 Identities=9% Similarity=-0.019 Sum_probs=87.4
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCCCch--hHhhHHHHHHhccCChHHHHHHhccCCCCC---cccHHHHHHHHHcCCCch
Q 035503 90 VYKRDMYTGQQIHARILKNGDFFARNE--YVETKLVVFYAKCDALDVASRLFCRLRVKN---VFSWAAIIGLNCRVGLSE 164 (788)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 164 (788)
+..|+.+....+.+...+.+ ...+. ......+...+..|+.+-...+++.-..++ ...++ .+...+..|+.+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~ 93 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG--RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRSPT 93 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHHHHHhcC--CCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCCHH
Confidence 45677777777766655554 22221 223344555666788877777776543332 22222 333444566655
Q ss_pred HHHHHHHHHHHCCCCCCc---ccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchh---hhhHHHHHhHhcCChHHHHH
Q 035503 165 KALIGFVEMQEDGVSPDN---FVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF---VASSLIDMYGKCGDLEEARK 238 (788)
Q Consensus 165 ~A~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~ 238 (788)
-+..+++.....++.++. .-.+. +...+..|+.+ +.+.+++.|..++.. .....+...++.|+.+-+..
T Consensus 94 ~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 168 (241)
T 1k1a_A 94 CLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168 (241)
T ss_dssp HHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHH
Confidence 444444443221112221 12222 22333445543 444555556444321 22344556667788888777
Q ss_pred HHhcCCCCC---cchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCC
Q 035503 239 VFDGMIARN---VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282 (788)
Q Consensus 239 ~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 282 (788)
+++.-...+ ..-++. +...+..|+.+ +++.+.+.|..++
T Consensus 169 Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 169 LLQHGANVNAQMYSGSSA-LHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HHHTTCCTTCBCTTSCBH-HHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHcCCCCCCcCCCCCCH-HHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 777643332 222222 33344556654 4444455565544
No 323
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.03 E-value=3.9e+02 Score=22.75 Aligned_cols=184 Identities=9% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhh--hhHHHHHhHhcC
Q 035503 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV--ASSLIDMYGKCG 231 (788)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g 231 (788)
+...+..|+.+....++..-...--..|..-.+.+..++.... .++.+.+++.|..++... -...+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred ChHHHHHHHhcC---CCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHH
Q 035503 232 DLEEARKVFDGM---IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAV 308 (788)
Q Consensus 232 ~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 308 (788)
+.+-+..+++.- .......-...+...+..|+.+-+.-+++.-...--..|..-.+.+..++........-..+.+.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Q ss_pred HHHhCCCCchhHHH--HHHHHHHhcCChhHHHHHHH
Q 035503 309 AVINGMELDNVLGS--SIINFYSKVGLLEDAEVVFS 342 (788)
Q Consensus 309 ~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~ 342 (788)
+++.|..++..... +-+...++.|+.+-+.-+++
T Consensus 164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 324
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.21 E-value=3.4e+02 Score=21.75 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCC
Q 035503 541 VTSLVDMYAKCGNIHQAKRVFDISPSKEL---PVYNAMISGYAMHGL--AVEALALFKNLQQKGIDP 602 (788)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p 602 (788)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.+. .+....++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34567777788888888888887765422 223344445554432 345667777776665443
Done!