BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035507
(684 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/478 (74%), Positives = 404/478 (84%), Gaps = 6/478 (1%)
Query: 196 DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMV 255
D E + + N + + + ES +KKRREGLQ+Q+ +P++ A ++ KLE LP M+
Sbjct: 23 DAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVD--KKLESLPAMI 80
Query: 256 AGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAW 314
GV+SDDNNLQLEATTQF+KLLSIE S PIEEVI+SGVVPRFV+FL RED+PQLQF+AAW
Sbjct: 81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAW 140
Query: 315 ALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS 374
ALTNIASGTSENTKVVI+H AVPIFVKLL S SDDVREQAVWALGNVA DS CRDLVL+
Sbjct: 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA 200
Query: 375 EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQV 434
GAL+PLLAQLNEHT+LSMLR AT TLSN CRGKP+P F+Q RPALPALA+LIHSNDE+V
Sbjct: 201 NGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEV 260
Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
LTDACWAL LS D NDKIQAVIEAGVC RLVELL HPSPSVL PAL TVGNIV GDD
Sbjct: 261 LTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA 319
Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
QTQCII+H A+PCLL+LL N K SIKKE W ISNI GN++QIQAVI+AG+IGPLVNL
Sbjct: 320 QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNL 379
Query: 555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
LQ AEFDIK+EAAWAISNA+S G+HDQIKYLV+EGCIKPLCDLL C D +IVTVCLEGLE
Sbjct: 380 LQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLE 439
Query: 615 NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
NILKVGE +K + GD+N F+Q+++EAEGLEKIENLQSHDNNEI+EK+VKILE YW
Sbjct: 440 NILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/423 (79%), Positives = 372/423 (87%), Gaps = 4/423 (0%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQ 309
LP M+ GV+SDDNNLQLEATTQF+KLLSIE S PIEEVI+SGVVPRFV+FL RED+PQLQ
Sbjct: 38 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQ 97
Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369
F+AAWALTNIASGTSENTKVVI+H AVPIFVKLL S SDDVREQAVWALGNVA DS CR
Sbjct: 98 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 157
Query: 370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS 429
DLVL+ GAL+PLLAQLNEHT+LSMLR AT TLSN CRGKP+P F+Q RPALPALA+LIHS
Sbjct: 158 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS 217
Query: 430 NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV 489
NDE+VLTDACWAL LS D NDKIQAVIEAGVC RLVELL HPSPSVL PAL TVGNIV
Sbjct: 218 NDEEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 490 MGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIG 549
GDD QTQCII+H A+PCLL+LL N K SIKKE W ISNI GN++QIQAVI+AG+IG
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 550 PLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVC 609
PLVNLLQ AEFDIK+EAAWAISNA+S G+HDQIKYLV+EGCIKPLCDLL C D +IVTVC
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 396
Query: 610 LEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILE 669
LEGLENILKVGE +K + GD+N F+Q+++EAEGLEKIENLQSHDNNEI+EK+VKILE
Sbjct: 397 LEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 454
Query: 670 TYW 672
YW
Sbjct: 455 AYW 457
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 109/248 (43%), Gaps = 45/248 (18%)
Query: 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS-PSV 477
+LPA+ ++S+D + +A L + I+ VI++GV R V+ L P +
Sbjct: 37 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 478 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE 537
A W + NI G T+ +I+HGAVP + LL + + ++++ W + N+A + +
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPK 155
Query: 538 QIQAVIDAGLIGPL---------VNLLQNAEF---------------------------- 560
V+ G + PL +++L+NA +
Sbjct: 156 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI 215
Query: 561 -----DIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLEN 615
++ +A WA+S S GT+D+I+ ++ G L +LL P ++ L + N
Sbjct: 216 HSNDEEVLTDACWALSYLSD-GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 274
Query: 616 ILKVGEAE 623
I+ +A+
Sbjct: 275 IVTGDDAQ 282
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 47/187 (25%)
Query: 240 PSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEF 299
P + LP + + S+D + +A L + I+ VIE+GV PR VE
Sbjct: 197 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 256
Query: 300 LMRE------------------DYPQLQF------------------------QAAWALT 317
L+ D Q Q +A W ++
Sbjct: 257 LLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 316
Query: 318 NIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV---LS 374
NI +G + + VI + V LL + D++++A WA+ N A S G D + +S
Sbjct: 317 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN--ATSGGSHDQIKYLVS 374
Query: 375 EGALIPL 381
EG + PL
Sbjct: 375 EGCIKPL 381
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 252/477 (52%), Positives = 329/477 (68%), Gaps = 21/477 (4%)
Query: 211 QQVNL---KRESFIKKRR------EGLQSQSYLPSALAPSINLHTKLEI-LPMMVAGVWS 260
QQV L KR+ + KRR +G S S+++ +++L+ LP M + S
Sbjct: 39 QQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNS 98
Query: 261 DDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-LQFQAAWALTN 318
DD QL AT +F+++LS E P I+ VI++GVVPR VEF MRE+ P+ LQ +AAWALTN
Sbjct: 99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALTN 157
Query: 319 IASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGAL 378
IASGTS TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+ RD VL A+
Sbjct: 158 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM 217
Query: 379 IPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLIHSNDEQVLTD 437
P+L N + + S++R AT TLSNLCRG KP+P + V ALP LA+LI+S D + L D
Sbjct: 218 EPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD 276
Query: 438 ACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ 497
ACWA+ LS D + IQAVI+ + RLVELL H S V TPAL VGNIV G+D QTQ
Sbjct: 277 ACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335
Query: 498 CIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN 557
+IN G +P L LL+ + K +IKKE W ISNI GN EQIQAVIDA LI PLV LL+
Sbjct: 336 VVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 394
Query: 558 AEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLEN 615
AE+ K+EA WAISNASS G D I+YLV++GCIKPLCDLL+ AD +I+ V L+ LEN
Sbjct: 395 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454
Query: 616 ILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
ILK+GEA+K +IN+ A +E+A G+EKI N Q ++N++I+EK+ KI+ETY+
Sbjct: 455 ILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 239/427 (55%), Positives = 305/427 (71%), Gaps = 11/427 (2%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-L 308
LP M + SDD QL AT +F+++LS E P I+ VI++GVVPR VEF MRE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
Q +AAWALTNIASGTS TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLI 427
RD VL A+ P+L N + S++R AT TLSNLCRG KP+P + V ALP LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
+S D + L DACWA+ LS D + IQAVI+ + RLVELL H S V TPAL VGN
Sbjct: 179 YSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 237
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G+D QTQ +IN G +P L LL+ + K +IKKE W ISNI GN EQIQAVIDA L
Sbjct: 238 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 296
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKI 605
I PLV LL+ AE+ K+EA WAISNASS G D I+YLV++GCIKPLCDLL+ AD +I
Sbjct: 297 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 356
Query: 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
+ V L+ LENILK+GEA+K +IN+ A +E+A G+EKI N Q ++N++I+EK+
Sbjct: 357 IEVTLDALENILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 666 KILETYW 672
KI+ETY+
Sbjct: 415 KIIETYF 421
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 424 bits (1089), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/427 (55%), Positives = 305/427 (71%), Gaps = 11/427 (2%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-L 308
LP M + SDD QL AT +F+++LS E P I+ VI++GVVPR VEF MRE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
Q +AAWALTNIASGTS TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLI 427
RD VL A+ P+L N + S++R AT TLSNLCRG KP+P + V ALP LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
+S D + L DACWA+ LS D + IQAVI+ + RLVELL H S V TPAL VGN
Sbjct: 179 YSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 237
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G+D QTQ +IN G +P L LL+ + K +IKKE W ISNI GN EQIQAVIDA L
Sbjct: 238 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 296
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKI 605
I PLV LL+ AE+ K+EA WAISNASS G D I+YLV++GCIKPLCDLL+ AD +I
Sbjct: 297 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 356
Query: 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
+ V L+ LENI+K+GEA+K +IN+ A +E+A G+EKI N Q ++N++I+EK+
Sbjct: 357 IEVTLDALENIIKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 666 KILETYW 672
KI+ETY+
Sbjct: 415 KIIETYF 421
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/427 (55%), Positives = 304/427 (71%), Gaps = 11/427 (2%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-L 308
LP M + SDD QL AT +F+++LS E P I+ VI++GVVPR VEF MRE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
Q +AAWALTNIASGTS TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLI 427
RD VL A+ P+L N + S++R AT TLSNLCRG KP+P + V ALP LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
+S D + L DACWA+ LS D + IQAVI+ + RLVELL H S V TPAL VGN
Sbjct: 180 YSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 238
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G+D QTQ +IN G +P L LL+ + K +IKKE W ISNI GN EQIQAVIDA L
Sbjct: 239 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 297
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKI 605
I PLV LL+ AE K+EA WAISNASS G D I+YLV++GCIKPLCDLL+ AD +I
Sbjct: 298 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 357
Query: 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
+ V L+ LENILK+GEA+K +IN+ A +E+A G+EKI N Q ++N++I+EK+
Sbjct: 358 IEVTLDALENILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 666 KILETYW 672
KI+ETY+
Sbjct: 416 KIIETYF 422
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/427 (55%), Positives = 304/427 (71%), Gaps = 11/427 (2%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-L 308
LP M + SDD QL AT +F+++LS E P I+ VI++GVVPR VEF MRE+ P+ L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
Q +AAWALTNIASGTS TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLI 427
RD VL A+ P+L N + S++R AT TLSNLCRG KP+P + V ALP LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
+S D + L DACWA+ LS D + IQAVI+ + RLVELL H S V TPAL VGN
Sbjct: 181 YSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G+D QTQ +IN G +P L LL+ + K +IKKE W ISNI GN EQIQAVIDA L
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKI 605
I PLV LL+ AE K+EA WAISNASS G D I+YLV++GCIKPLCDLL+ AD +I
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
+ V L+ LENILK+GEA+K +IN+ A +E+A G+EKI N Q ++N++I+EK+
Sbjct: 359 IEVTLDALENILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 666 KILETYW 672
KI+ETY+
Sbjct: 417 KIIETYF 423
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/427 (55%), Positives = 304/427 (71%), Gaps = 11/427 (2%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-L 308
LP M + SDD QL AT +F+++LS E P I+ VI++GVVPR VEF MRE+ P+ L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
Q +AAWALTNIASGTS TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLI 427
RD VL A+ P+L N + S++R AT TLSNLCRG KP+P + V ALP LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
+S D + L DACWA+ LS D + IQAVI+ + RLVELL H S V TPAL VGN
Sbjct: 181 YSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G+D QTQ +IN G +P L LL+ + K +IKKE W ISNI GN EQIQAVIDA L
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKI 605
I PLV LL+ AE K+EA WAISNASS G D I+YLV++GCIKPLCDLL+ AD +I
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
+ V L+ LENILK+GEA+K +IN+ A +E+A G+EKI N Q ++N++I+EK+
Sbjct: 359 IEVTLDALENILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 666 KILETYW 672
KI+ETY+
Sbjct: 417 KIIETYF 423
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/427 (55%), Positives = 304/427 (71%), Gaps = 11/427 (2%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-L 308
LP M + SDD QL AT +F+++LS E P I+ VI++GVVPR VEF MRE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
Q +AAWALTNIASGTS TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLI 427
RD VL A+ P+L N + S++R AT TLSNLCRG KP+P + V ALP LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
+S D + L DACWA+ LS D + IQAVI+ + RLVELL H S V TPAL VGN
Sbjct: 180 YSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 238
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G+D QTQ +IN G +P L LL+ + K +IKKE W ISNI GN EQIQAVIDA L
Sbjct: 239 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 297
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKI 605
I PLV LL+ AE K+EA WAISNASS G D I+YLV++GCIKPLCDLL+ AD +I
Sbjct: 298 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 357
Query: 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
+ V L+ LENILK+GEA+K +IN+ A +E+A G+EKI N Q ++N++I+EK+
Sbjct: 358 IEVTLDALENILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 666 KILETYW 672
KI+ETY+
Sbjct: 416 KIIETYF 422
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/422 (55%), Positives = 293/422 (69%), Gaps = 7/422 (1%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIES-GVVPRFVEFLMREDYPQLQFQ 311
M+ ++S QL AT +F+KLLS E + PI+EVI + GVV RFVEFL R++ LQF+
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 312 AAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371
+AW LTNIASG S T++VI+ AVPIF++LL+S +DV+EQAVWALGN+A DS+ CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSN 430
VL L PLL ++ L+M R A LSNLCRGK P P F +V P L L+ L+ +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
D VL DACWAL LS D NDKIQAVI+AGVC RLVELL H V++PAL VGNIV
Sbjct: 205 DTDVLADACWALSYLS-DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
GDD QTQ I+N A+ L L+ + K SIKKE W ISNI GNR QIQ VIDA +
Sbjct: 264 GDDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPA 322
Query: 551 LVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCL 610
L+++LQ AEF ++EAAWAI+NA+S G+ +QIKYLV GCIKPLCDLL D KIV V L
Sbjct: 323 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382
Query: 611 EGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILET 670
GLENIL++GE E + IN + L+EEA GL+KIE LQSH+N EI++K+ ++E
Sbjct: 383 NGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
Query: 671 YW 672
Y+
Sbjct: 441 YF 442
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/422 (55%), Positives = 293/422 (69%), Gaps = 7/422 (1%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIES-GVVPRFVEFLMREDYPQLQFQ 311
M+ ++S QL AT +F+KLLS E + PI+EVI + GVV RFVEFL R++ LQF+
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 312 AAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371
+AW LTNIASG S T++VI+ AVPIF++LL+S +DV+EQAVWALGN+A DS+ CRD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSN 430
VL L PLL ++ L+M R A LSNLCRGK P P F +V P L L+ L+ +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
D VL DACWAL LS D NDKIQAVI+AGVC RLVELL H V++PAL VGNIV
Sbjct: 202 DTDVLADACWALSYLS-DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 260
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
GDD QTQ I+N A+ L L+ + K SIKKE W ISNI GNR QIQ VIDA +
Sbjct: 261 GDDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPA 319
Query: 551 LVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCL 610
L+++LQ AEF ++EAAWAI+NA+S G+ +QIKYLV GCIKPLCDLL D KIV V L
Sbjct: 320 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 379
Query: 611 EGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILET 670
GLENIL++GE E + IN + L+EEA GL+KIE LQSH+N EI++K+ ++E
Sbjct: 380 NGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 437
Query: 671 YW 672
Y+
Sbjct: 438 YF 439
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 242 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 420 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 668 LETYW 672
+E Y+
Sbjct: 473 IEKYF 477
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 242 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 420 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 668 LETYW 672
+E Y+
Sbjct: 473 IEKYF 477
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 192 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 370 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 422
Query: 668 LETYW 672
+E Y+
Sbjct: 423 IEKYF 427
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 38 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 98 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 218 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 276
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 277 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 335
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 336 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 395
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 396 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 448
Query: 668 LETYW 672
+E Y+
Sbjct: 449 IEKYF 453
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 353 bits (907), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 242 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 420 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 668 LETYW 672
+E Y+
Sbjct: 473 IEKYF 477
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 353 bits (906), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 187 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 365 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 417
Query: 668 LETYW 672
+E Y+
Sbjct: 418 IEKYF 422
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 353 bits (906), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 192 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 370 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 422
Query: 668 LETYW 672
+E Y+
Sbjct: 423 IEKYF 427
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 353 bits (906), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 191 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 369 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 421
Query: 668 LETYW 672
+E Y+
Sbjct: 422 IEKYF 426
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 353 bits (906), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 198 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 315
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 375
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 376 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 428
Query: 668 LETYW 672
+E Y+
Sbjct: 429 IEKYF 433
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 353 bits (906), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 191 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 369 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 421
Query: 668 LETYW 672
+E Y+
Sbjct: 422 IEKYF 426
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 353 bits (906), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 48 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 228 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 287 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 345
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 346 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 405
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 406 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 458
Query: 668 LETYW 672
+E Y+
Sbjct: 459 IEKYF 463
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 353 bits (906), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 187 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 365 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 417
Query: 668 LETYW 672
+E Y+
Sbjct: 418 IEKYF 422
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 353 bits (906), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 46 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 226 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 284
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 285 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 343
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 344 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 403
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 404 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 456
Query: 668 LETYW 672
+E Y+
Sbjct: 457 IEKYF 461
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 353 bits (906), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 192 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++EAAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 370 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 422
Query: 668 LETYW 672
+E Y+
Sbjct: 423 IEKYF 427
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 350 bits (897), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 273/426 (64%), Gaps = 15/426 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S++ QL+AT +KLLS E P I+ +I +G++P+FV FL + D +QF++
Sbjct: 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A S RDLV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L LR T TLSNLCR K P P D V LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H ND +VL D+CWA+ L+ D N++I+ V++ GV +LV+LLG ++TPAL +GN
Sbjct: 261 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 319
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 320 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 378
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV +L A+F ++ AAWAI+N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 379 VPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ +
Sbjct: 439 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 491
Query: 668 LETYWC 673
+E Y+
Sbjct: 492 IEKYFS 497
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 348 bits (893), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 193/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
+V G+ S + QL+AT +KLLS E P I+ +I +G++P+FV FL R D +QF++
Sbjct: 13 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
AWALTNIASGTSE TK V++ A+P F+ LLASP + EQAVWALGN+A D S RDLV
Sbjct: 73 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 373 LSEGALIPLLAQLNEHTELSM----LRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
+ GA+ PLLA L S+ LR T TLSNLCR K P P D V LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
H +D +VL D CWA+ L+ D N++I V++ GV +LV+LLG ++TPAL +GN
Sbjct: 193 HHDDPEVLADTCWAISYLT-DGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGN 251
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
IV G D QTQ +I+ GA+ +LL N K +I+KE +W +SNI G ++QIQ V++ GL
Sbjct: 252 IVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 310
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV++L A+F ++EA WA++N +S GT +QI YLV G I+PL +LL D KI+
Sbjct: 311 VPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIIL 370
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
V L+ + NI + E +G+ + + ++EE GL+KIE LQ+H+N +++ S+ +
Sbjct: 371 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSL 423
Query: 668 LETYW 672
+E Y+
Sbjct: 424 IEKYF 428
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQL 308
+ILP +V + DD + + L + I V+++GVVP+ V+ L + P +
Sbjct: 183 QILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELP-I 241
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
A A+ NI +GT E T+VVI+ A+ +F LL +P +++++A W + N+ A
Sbjct: 242 VTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 301
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407
V++ G L+P L + + + A ++N G
Sbjct: 302 IQQVVNHG-LVPFLVSVLSKADFKTQKEAVWAVTNYTSG 339
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 140/250 (56%), Gaps = 16/250 (6%)
Query: 420 LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT 479
LP + Q ++S+D Q A + D N++IQAVI+AG LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI 539
ALW + NI G + Q Q +I+ GA+P L+ LL + I +E W +SNIA G EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599
QAVIDAG + LV LL + I +EA WA+SN +S G ++QI+ ++ G + L LL
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLS 190
Query: 600 CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNE 659
+ +I+ L L NI G +K Q V+EA LEK+E LQSH+N +
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK-------------QAVKEAGALEKLEQLQSHENEK 237
Query: 660 IHEKSVKILE 669
I +++ + LE
Sbjct: 238 IQKEAQEALE 247
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 3/198 (1%)
Query: 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVL 478
ALPAL QL+ S +EQ+L +A WAL ++ N++IQAVI+AG LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQ 538
ALW + NI G + Q Q +I+ GA+P L+ LL + I +E W +SNIA G EQ
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 172
Query: 539 IQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL 598
IQAVIDAG + LV LL + I +EA WA+SN +S G ++Q + + G ++ L L
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQ 231
Query: 599 QCADPKIVTVCLEGLENI 616
+ KI E LE +
Sbjct: 232 SHENEKIQKEAQEALEKL 249
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 129/223 (57%), Gaps = 4/223 (1%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQF 310
LP M + SDD QL AT +F ++LS + I+ VI++G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ- 72
Query: 311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370
+A WAL+NIASG +E + VI+ A+P V+LL+SP++ + ++A+WAL N+A+ +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRP-ALPALAQLIHS 429
V+ GAL P L QL +L+ A LSN+ G + + ALPAL QL+ S
Sbjct: 133 AVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191
Query: 430 NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH 472
+EQ+L +A WAL ++ N K QAV EAG +L +L H
Sbjct: 192 PNEQILQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQSH 233
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 6/227 (2%)
Query: 347 SDDVREQ--AVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404
SDD++EQ A + +D + V+ GAL P L QL +L+ A LSN+
Sbjct: 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNI 81
Query: 405 CRGKPRPLFDQVRP-ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVC 463
G + + ALPAL QL+ S +EQ+L +A WAL ++ N++IQAVI+AG
Sbjct: 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGAL 140
Query: 464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKE 523
LV+LL P+ +L ALW + NI G + Q Q +I+ GA+P L+ LL + I +E
Sbjct: 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQE 199
Query: 524 VSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAI 570
W +SNIA G EQ QAV +AG + L L + I++EA A+
Sbjct: 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQF 310
LP +V + S + + EA + S + I+ VI++G +P V+ L + LQ
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ- 198
Query: 311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWAL 358
+A WAL+NIASG +E + V E A+ +L + ++ ++++A AL
Sbjct: 199 EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 111/198 (56%), Gaps = 5/198 (2%)
Query: 420 LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT 479
LP + Q ++S D+Q L A L ++ N++IQAVI+AG LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI 539
ALW + NI G + Q Q +I+ GA+P L+ LL + I +E W +SNIA G EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599
QAVIDAG + LV LL + I +EA WA+SN +S G K V E +P + LQ
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQ 189
Query: 600 CA-DPKIVTVCLEGLENI 616
+ + KI E LE I
Sbjct: 190 SSPNEKIQKEAQEALEKI 207
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Query: 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVL 478
ALPAL QL+ S +EQ+L +A WAL ++ N++IQAVI+AG LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQ 538
ALW + NI G + Q Q +I+ GA+P L+ LL + I +E W +SNIA G EQ
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 172
Query: 539 IQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAI 570
QAV +AG L L + I++EA A+
Sbjct: 173 KQAVKEAGAEPALEQLQSSPNEKIQKEAQEAL 204
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 3/193 (1%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQF 310
LP MV + S D A + ++ S + I+ VI++G +P V+ L + LQ
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ- 72
Query: 311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370
+A WAL+NIASG +E + VI+ A+P V+LL+SP++ + ++A+WAL N+A+ +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR-GKPRPLFDQVRPALPALAQLIHS 429
V+ GAL P L QL +L+ A LSN+ G + + A PAL QL S
Sbjct: 133 AVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSS 191
Query: 430 NDEQVLTDACWAL 442
+E++ +A AL
Sbjct: 192 PNEKIQKEAQEAL 204
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 112/197 (56%), Gaps = 3/197 (1%)
Query: 420 LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT 479
LP + Q ++S D+Q L A L ++ N++IQAVI+AG LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI 539
ALW + NI G + Q Q +I+ GA+P L+ LL + I +E W +SNIA G EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599
QAVIDAG + LV LL + I +EA WA+SN +S G ++Q + + G ++ L L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQS 190
Query: 600 CADPKIVTVCLEGLENI 616
+ KI E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 112/205 (54%), Gaps = 15/205 (7%)
Query: 465 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEV 524
++V+ L P L AL + I G + Q Q +I+ GA+P L+ LL + I +E
Sbjct: 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEA 74
Query: 525 SWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKY 584
W +SNIA G EQIQAVIDAG + LV LL + I +EA WA+SN +S G ++QI+
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQA 133
Query: 585 LVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAE 644
++ G + L LL + +I+ L L NI G +K Q V+EA
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK-------------QAVKEAG 180
Query: 645 GLEKIENLQSHDNNEIHEKSVKILE 669
LEK+E LQSH+N +I +++ + LE
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALE 205
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRG---KPRPLFDQVRPALPALAQLIHSNDE 432
G+ +P + Q + L+ A LS + G + + + D ALPAL QL+ S +E
Sbjct: 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID--AGALPALVQLLSSPNE 68
Query: 433 QVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD 492
Q+L +A WAL ++ N++IQAVI+AG LV+LL P+ +L ALW + NI G
Sbjct: 69 QILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127
Query: 493 DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLV 552
+ Q Q +I+ GA+P L+ LL + I +E W +SNIA G EQ QAV +AG + L
Sbjct: 128 NEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186
Query: 553 NLLQNAEFDIKEEAAWAI 570
L + I++EA A+
Sbjct: 187 QLQSHENEKIQKEAQEAL 204
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQF 310
LP MV + S D A + ++ S + I+ VI++G +P V+ L + LQ
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ- 72
Query: 311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370
+A WAL+NIASG +E + VI+ A+P V+LL+SP++ + ++A+WAL N+A+ +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407
V+ GAL P L QL +L+ A LSN+ G
Sbjct: 133 AVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASG 168
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 110/197 (55%), Gaps = 3/197 (1%)
Query: 420 LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT 479
LP + Q ++S+D Q A + D N++IQAVI+AG LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI 539
ALW + NI G + Q Q +I+ GA+P L+ LL + I +E W +SNIA G EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599
QAVIDAG + LV LL + I +EA WA+SN +S G ++Q + + G ++ L L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQS 190
Query: 600 CADPKIVTVCLEGLENI 616
+ KI E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
Query: 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVL 478
ALPAL QL+ S +EQ+L +A WAL ++ N++IQAVI+AG LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQ 538
ALW + NI G + Q Q +I+ GA+P L+ LL + I +E W +SNIA G EQ
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 172
Query: 539 IQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAI 570
QAV +AG + L L + I++EA A+
Sbjct: 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 102/182 (56%), Gaps = 15/182 (8%)
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
I+ + Q Q +I+ GA+P L+ LL + I +E W +SNIA G EQIQAVIDAG
Sbjct: 39 ILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
+ LV LL + I +EA WA+SN +S G ++QI+ ++ G + L LL + +I+
Sbjct: 98 LPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
L L NI G +K Q V+EA LEK+E LQSH+N +I +++ +
Sbjct: 157 EALWALSNIASGGNEQK-------------QAVKEAGALEKLEQLQSHENEKIQKEAQEA 203
Query: 668 LE 669
LE
Sbjct: 204 LE 205
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 108/193 (55%), Gaps = 3/193 (1%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQF 310
LP M + SDD QL AT +F ++LS + I+ VI++G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ- 72
Query: 311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370
+A WAL+NIASG +E + VI+ A+P V+LL+SP++ + ++A+WAL N+A+ +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR-GKPRPLFDQVRPALPALAQLIHS 429
V+ GAL P L QL +L+ A LSN+ G + + AL L QL
Sbjct: 133 AVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 430 NDEQVLTDACWAL 442
+E++ +A AL
Sbjct: 192 ENEKIQKEAQEAL 204
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 10/241 (4%)
Query: 378 LIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPA--LPALAQLIHSNDEQVL 435
L+ LL + T+ R L+ + G P + A + L +L+ S D +V
Sbjct: 7 LVKLLTSTDSETQKEAAR----DLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 436 TDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 495
+A AL ++ ++ I+A+++AG LV+LL V A + NI G D
Sbjct: 62 KEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 120
Query: 496 TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL 555
+ I++ G V L+ LL + ++KE + ++NIA G E I+A++DAG + LV LL
Sbjct: 121 IKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL 179
Query: 556 QNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLEN 615
+ + ++++EAA A++N +S G IK +V G ++ L LL D ++ LEN
Sbjct: 180 TSTDSEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238
Query: 616 I 616
I
Sbjct: 239 I 239
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 16/252 (6%)
Query: 423 LAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPAL 482
L +L+ S D + +A L ++ + I+A+++AG LV+LL V A
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPAS-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 65
Query: 483 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV 542
+ NI G D + I++ G V L+ LL + ++KE + ++NIA G E I+A+
Sbjct: 66 RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAI 124
Query: 543 IDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD 602
+DAG + LV LL + + ++++EAA A++N +S G + IK +V G ++ L LL D
Sbjct: 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTD 183
Query: 603 PKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHE 662
++ L NI G + +V +A G+E ++ L + ++E+ +
Sbjct: 184 SEVQKEAARALANIAS------------GPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQK 230
Query: 663 KSVKILETYWCG 674
++ + LE G
Sbjct: 231 EAQRALENIKSG 242
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 6/234 (2%)
Query: 260 SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNI 319
S D+ Q EA ++ S + I+ ++++G V V+ L D ++Q +AA AL NI
Sbjct: 13 STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANI 71
Query: 320 ASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALI 379
ASG E K +++ V + VKLL S +V+++A AL N+A+ ++ G +
Sbjct: 72 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGG-V 130
Query: 380 PLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPA--LPALAQLIHSNDEQVLTD 437
+L +L T+ + + A L+N+ G P + A + L +L+ S D +V +
Sbjct: 131 EVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKE 189
Query: 438 ACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG 491
A AL ++ + I+A+++AG L +LL V A + NI G
Sbjct: 190 AARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 465 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEV 524
+LV+LL A + I G + I++ G V L+ LL + ++KE
Sbjct: 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEA 64
Query: 525 SWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKY 584
+ ++NIA G E I+A++DAG + LV LL + + ++++EAA A++N +S G + IK
Sbjct: 65 ARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKA 123
Query: 585 LVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAE 644
+V G ++ L LL D ++ L NI ++ + + +A
Sbjct: 124 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-------------GPDEAIKAIVDAG 170
Query: 645 GLEKIENLQSHDNNEIHEKSVKILETYWCG 674
G+E + L + ++E+ +++ + L G
Sbjct: 171 GVEVLVKLLTSTDSEVQKEAARALANIASG 200
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
A L N+ S E + + +P VK+L SP D V A+ L N+ G + V
Sbjct: 78 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
G L ++A LN+ T + L I T L L G + P AL ++ +
Sbjct: 137 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
E++L L LS +N A++EAG L L PS ++ LWT+ N+
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 251
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
D T+ G + L+ LL + N + + I+SN+ C N + V G I
Sbjct: 252 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 309
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
LV + A DI E A A+ + +SR
Sbjct: 310 LVRTVLRAGDREDITEPAICALRHLTSR 337
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 67 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 181
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT--HDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S + +V G ++ L L DP
Sbjct: 182 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 236
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 237 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 271
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 22/247 (8%)
Query: 287 VIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP 346
++ SG V + Y +L + + L + S S N ++E + L P
Sbjct: 178 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 236
Query: 347 SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL-C 405
S + + +W L N++ ++ + EG L+ L QL +++++ A LSNL C
Sbjct: 237 SQRLVQNCLWTLRNLSDAATKQEGM---EG-LLGTLVQLLGSDDINVVTCAAGILSNLTC 292
Query: 406 RG-KPRPLFDQVRPALPALAQLIHSNDEQVLTD-ACWALFGLSGDRNNDKI-QAVIEAGV 462
K + + QV + ++ + D + +T+ A AL L+ ++ Q +
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352
Query: 463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ-CIINH------GAVPCLLALLIHN 515
+V L HP P+ W + +G C NH GA+P L+ LL+
Sbjct: 353 GLPVVVKLLHP------PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 406
Query: 516 HKNSIKK 522
H+++ ++
Sbjct: 407 HQDTQRR 413
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
A L N+ S E + + +P VK+L SP D V A+ L N+ G + V
Sbjct: 85 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 143
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
G L ++A LN+ T + L I T L L G + P AL ++ +
Sbjct: 144 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 202
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
E++L L LS +N A++EAG L L PS ++ LWT+ N+
Sbjct: 203 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 258
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
D T+ G + L+ LL + N + + I+SN+ C N + V G I
Sbjct: 259 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 316
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
LV + A DI E A A+ + +SR
Sbjct: 317 LVRTVLRAGDREDITEPAICALRHLTSR 344
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 74 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 131
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 132 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 188
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASS--RGTHDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S +V G ++ L L DP
Sbjct: 189 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 243
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 244 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 278
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 399 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 458
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 22/247 (8%)
Query: 287 VIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP 346
++ SG V + Y +L + + L + S S N ++E + L P
Sbjct: 185 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 243
Query: 347 SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL-C 405
S + + +W L N++ ++ + EG L+ L QL +++++ A LSNL C
Sbjct: 244 SQRLVQNCLWTLRNLSDAATKQEGM---EG-LLGTLVQLLGSDDINVVTCAAGILSNLTC 299
Query: 406 RG-KPRPLFDQVRPALPALAQLIHSNDEQVLTD-ACWALFGLSGDRNNDKI-QAVIEAGV 462
K + + QV + ++ + D + +T+ A AL L+ ++ Q +
Sbjct: 300 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 359
Query: 463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ-CIINH------GAVPCLLALLIHN 515
+V L HP P+ W + +G C NH GA+P L+ LL+
Sbjct: 360 GLPVVVKLLHP------PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 413
Query: 516 HKNSIKK 522
H+++ ++
Sbjct: 414 HQDTQRR 420
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
A L N+ S E + + +P VK+L SP D V A+ L N+ G + V
Sbjct: 82 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 140
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
G L ++A LN+ T + L I T L L G + P AL ++ +
Sbjct: 141 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 199
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
E++L L LS +N A++EAG L L PS ++ LWT+ N+
Sbjct: 200 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 255
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
D T+ G + L+ LL + N + + I+SN+ C N + V G I
Sbjct: 256 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 313
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
LV + A DI E A A+ + +SR
Sbjct: 314 LVRTVLRAGDREDITEPAICALRHLTSR 341
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 71 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 128
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 129 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 185
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT--HDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S + +V G ++ L L DP
Sbjct: 186 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 240
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 241 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 275
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 396 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 455
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
E + + +P VK+L SP D V A+ L N+ G + V G L ++A
Sbjct: 90 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
LN+ T + L I T L L G + P AL ++ + E++L L
Sbjct: 150 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 208
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
LS +N A++EAG L L PS ++ LWT+ N+ D T+
Sbjct: 209 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 263
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
G + L+ LL + N + + I+SN+ C N + V G I LV + A
Sbjct: 264 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 322
Query: 561 DIKEEAAWAISNASSR 576
DI E A A+ + +SR
Sbjct: 323 DITEPAICALRHLTSR 338
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 68 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 125
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 126 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 182
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT--HDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S + +V G ++ L L DP
Sbjct: 183 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 237
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 238 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 272
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 22/247 (8%)
Query: 287 VIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP 346
++ SG V + Y +L + + L + S S N ++E + L P
Sbjct: 179 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 237
Query: 347 SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL-C 405
S + + +W L N++ ++ + EG L+ L QL +++++ A LSNL C
Sbjct: 238 SQRLVQNCLWTLRNLSDAATKQEGM---EG-LLGTLVQLLGSDDINVVTCAAGILSNLTC 293
Query: 406 RG-KPRPLFDQVRPALPALAQLIHSNDEQVLTD-ACWALFGLSGDRNNDKI-QAVIEAGV 462
K + + QV + ++ + D + +T+ A AL L+ ++ Q +
Sbjct: 294 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 353
Query: 463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ-CIINH------GAVPCLLALLIHN 515
+V L HP P+ W + +G C NH GA+P L+ LL+
Sbjct: 354 GLPVVVKLLHP------PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 407
Query: 516 HKNSIKK 522
H+++ ++
Sbjct: 408 HQDTQRR 414
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
A L N+ S E + + +P VK+L SP D V A+ L N+ G + V
Sbjct: 79 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 137
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
G L ++A LN+ T + L I T L L G + P AL ++ +
Sbjct: 138 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 196
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
E++L L LS +N A++EAG L L PS ++ LWT+ N+
Sbjct: 197 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 252
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
D T+ G + L+ LL + N + + I+SN+ C N + V G I
Sbjct: 253 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 310
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
LV + A DI E A A+ + +SR
Sbjct: 311 LVRTVLRAGDREDITEPAICALRHLTSR 338
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 68 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 125
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 126 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 182
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT--HDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S + +V G ++ L L DP
Sbjct: 183 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 237
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 238 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 272
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 22/247 (8%)
Query: 287 VIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP 346
++ SG V + Y +L + + L + S S N ++E + L P
Sbjct: 179 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 237
Query: 347 SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL-C 405
S + + +W L N++ ++ + EG L+ L QL +++++ A LSNL C
Sbjct: 238 SQRLVQNCLWTLRNLSDAATKQEGM---EG-LLGTLVQLLGSDDINVVTCAAGILSNLTC 293
Query: 406 RG-KPRPLFDQVRPALPALAQLIHSNDEQVLTD-ACWALFGLSGDRNNDKI-QAVIEAGV 462
K + + QV + ++ + D + +T+ A AL L+ ++ Q +
Sbjct: 294 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 353
Query: 463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ-CIINH------GAVPCLLALLIHN 515
+V L HP P+ W + +G C NH GA+P L+ LL+
Sbjct: 354 GLPVVVKLLHP------PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 407
Query: 516 HKNSIKK 522
H+++ ++
Sbjct: 408 HQDTQRR 414
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
A L N+ S E + + +P VK+L SP D V A+ L N+ G + V
Sbjct: 83 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 141
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
G L ++A LN+ T + L I T L L G + P AL ++ +
Sbjct: 142 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
E++L L LS +N A++EAG L L PS ++ LWT+ N+
Sbjct: 201 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 256
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
D T+ G + L+ LL + N + + I+SN+ C N + V G I
Sbjct: 257 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 314
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
LV + A DI E A A+ + +SR
Sbjct: 315 LVRTVLRAGDREDITEPAICALRHLTSR 342
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 72 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 129
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 130 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 186
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASS--RGTHDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S +V G ++ L L DP
Sbjct: 187 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 241
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 242 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 276
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
E + + +P VK+L SP D V A+ L N+ G + V G L ++A
Sbjct: 79 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 138
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
LN+ T + L I T L L G + P AL ++ + E++L L
Sbjct: 139 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 197
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
LS +N A++EAG L L PS ++ LWT+ N+ D T+
Sbjct: 198 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 252
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
G + L+ LL + N + + I+SN+ C N + V G I LV + A
Sbjct: 253 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 311
Query: 561 DIKEEAAWAISNASSR 576
DI E A A+ + +SR
Sbjct: 312 DITEPAICALRHLTSR 327
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 57 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 114
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 115 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 171
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASS--RGTHDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S +V G ++ L L DP
Sbjct: 172 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 226
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 227 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 261
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 382 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 441
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
A L N+ S E + + +P VK+L SP D V A+ L N+ G + V
Sbjct: 84 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 142
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
G L ++A LN+ T + L I T L L G + P AL ++ +
Sbjct: 143 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 201
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
E++L L LS +N A++EAG L L PS ++ LWT+ N+
Sbjct: 202 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 257
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
D T+ G + L+ LL + N + + I+SN+ C N + V G I
Sbjct: 258 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 315
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
LV + A DI E A A+ + +SR
Sbjct: 316 LVRTVLRAGDREDITEPAICALRHLTSR 343
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 73 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 130
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 131 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 187
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT--HDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S + +V G ++ L L DP
Sbjct: 188 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 242
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 243 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 277
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 398 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 457
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
E + + +P VK+L SP D V A+ L N+ G + V G L ++A
Sbjct: 77 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
LN+ T + L I T L L G + P AL ++ + E++L L
Sbjct: 137 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 195
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
LS +N A++EAG L L PS ++ LWT+ N+ D T+
Sbjct: 196 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 250
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
G + L+ LL + N + + I+SN+ C N + V G I LV + A
Sbjct: 251 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 309
Query: 561 DIKEEAAWAISNASSR 576
DI E A A+ + +SR
Sbjct: 310 DITEPAICALRHLTSR 325
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 55 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 112
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 113 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 169
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASS--RGTHDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S +V G ++ L L DP
Sbjct: 170 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 224
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 225 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 259
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
A L N+ S E + + +P VK+L SP D V A+ L N+ G + V
Sbjct: 83 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 141
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
G L ++A LN+ T + L I T L L G + P AL ++ +
Sbjct: 142 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
E++L L LS +N A++EAG L L PS ++ LWT+ N+
Sbjct: 201 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 256
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
D T+ G + L+ LL + N + + I+SN+ C N + V G I
Sbjct: 257 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 314
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
LV + A DI E A A+ + +SR
Sbjct: 315 LVRTVLRAGDREDITEPAICALRHLTSR 342
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 72 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 129
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 130 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 186
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASS--RGTHDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S +V G ++ L L DP
Sbjct: 187 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 241
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 242 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 276
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
E + + +P VK+L SP D V A+ L N+ G + V G L ++A
Sbjct: 77 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
LN+ T + L I T L L G + P AL ++ + E++L L
Sbjct: 137 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 195
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
LS +N A++EAG L L PS ++ LWT+ N+ D T+
Sbjct: 196 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 250
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
G + L+ LL + N + + I+SN+ C N + V G I LV + A
Sbjct: 251 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 309
Query: 561 DIKEEAAWAISNASSR 576
DI E A A+ + +SR
Sbjct: 310 DITEPAICALRHLTSR 325
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 55 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 112
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 113 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 169
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASS--RGTHDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S +V G ++ L L DP
Sbjct: 170 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 224
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 225 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 259
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
E + + +P VK+L SP D V A+ L N+ G + V G L ++A
Sbjct: 92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
LN+ T + L I T L L G + P AL ++ + E++L L
Sbjct: 152 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 210
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
LS +N A++EAG L L PS ++ LWT+ N+ D T+
Sbjct: 211 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 265
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
G + L+ LL + N + + I+SN+ C N + V G I LV + A
Sbjct: 266 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 324
Query: 561 DIKEEAAWAISNASSR 576
DI E A A+ + +SR
Sbjct: 325 DITEPAICALRHLTSR 340
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 70 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 184
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT--HDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S + +V G ++ L L DP
Sbjct: 185 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 239
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 240 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 274
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
E + + +P VK+L SP D V A+ L N+ G + V G L ++A
Sbjct: 81 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 140
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
LN+ T + L I T L L G + P AL ++ + E++L L
Sbjct: 141 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 199
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
LS +N A++EAG L L PS ++ LWT+ N+ D T+
Sbjct: 200 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 254
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
G + L+ LL + N + + I+SN+ C N + V G I LV + A
Sbjct: 255 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 313
Query: 561 DIKEEAAWAISNASSR 576
DI E A A+ + +SR
Sbjct: 314 DITEPAICALRHLTSR 329
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 18/215 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 59 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 116
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + ++ALL +K ++K + + +A GN+E ++ +
Sbjct: 117 LLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 173
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASS--RGTHDQIKYLVTEGCIKPLCDLLQCADP 603
G LVN+++ + E+ W S +V G ++ L L DP
Sbjct: 174 GGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDP 228
Query: 604 --KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 229 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 263
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF + I G + N
Sbjct: 384 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 443
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 108/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
E + + +P V +L SP D V A+ L N+ G + V G L ++A
Sbjct: 225 EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
LN+ T + L I T L L G + P AL ++ + E++L L
Sbjct: 285 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
LS +N A++EAG L L PS ++ LWT+ N+ D T+
Sbjct: 344 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 398
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
G + L+ LL + N + + I+SN+ C N + V G I LV + A
Sbjct: 399 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 457
Query: 561 DIKEEAAWAISNASSR 576
DI E A A+ + +SR
Sbjct: 458 DITEPAICALRHLTSR 473
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 16/214 (7%)
Query: 429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488
+ND + L LS R + + A+ ++G LV +LG P SVL A+ T+ N+
Sbjct: 204 TNDVETARCTSGTLHNLSHHR--EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNL 261
Query: 489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDAG 546
++ + + G + ++ALL +K ++K + + +A GN+E ++ +G
Sbjct: 262 LLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASG 318
Query: 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGT--HDQIKYLVTEGCIKPLCDLLQCADP- 603
LVN+++ + E+ W S + +V G ++ L L DP
Sbjct: 319 GPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG--LHLTDPS 373
Query: 604 -KIVTVCLEGLENILKVGEAEKNTDSDIGDINQF 636
++V CL L N+ ++ + +G + Q
Sbjct: 374 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 407
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 379 IPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDA 438
IPL QL ++ R+A L L + K + A L +L+HS +E V T A
Sbjct: 595 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 654
Query: 439 CWALFGLSGDRNND 452
LF +S D+ D
Sbjct: 655 AAVLFRMSEDKPQD 668
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQF----------QAAWALTNIASGTSENTK 328
E G +PR V+ L+R Q QF +A +I + N
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 588 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 108/254 (42%), Gaps = 36/254 (14%)
Query: 287 VIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP 346
++ SG V + Y +L + + L + S S N ++E + L P
Sbjct: 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 372
Query: 347 SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL-C 405
S + + +W L N++ ++ + EG L+ L QL +++++ A LSNL C
Sbjct: 373 SQRLVQNCLWTLRNLSDAATKQEGM---EG-LLGTLVQLLGSDDINVVTCAAGILSNLTC 428
Query: 406 RG-KPRPLFDQVRPALPALAQLIHSNDEQVLTD-ACWALFGLSGDRNNDKI-QAVIEAGV 462
K + + QV + ++ + D + +T+ A AL L+ + ++ Q +
Sbjct: 429 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488
Query: 463 CGRLVELLGHPSPSVLTPALW-----TVG---NIVMGDDFQTQCIINH------GAVPCL 508
+V L HP P+ W TVG N+ + C NH GA+P L
Sbjct: 489 GLPVVVKLLHP------PSHWPLIKATVGLIRNLAL-------CPANHAPLREQGAIPRL 535
Query: 509 LALLIHNHKNSIKK 522
+ LL+ H+++ ++
Sbjct: 536 VQLLVRAHQDTQRR 549
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 106/256 (41%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
E + + +P VK L SP D V A+ L N+ G + V G L +A
Sbjct: 34 EGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVAL 93
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHSND-EQVLTDACWAL 442
LN+ T + L I T L L G + P AL + + E++L L
Sbjct: 94 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYTYEKLLWTTSRVL 152
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
LS +N A++EAG L L PS ++ LWT+ N+ D T+
Sbjct: 153 KVLSVCSSNKP--AIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGXE 207
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
G + L+ LL + N + + I+SN+ C N + V G I LV + A
Sbjct: 208 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDRE 266
Query: 561 DIKEEAAWAISNASSR 576
DI E A A+ + +SR
Sbjct: 267 DITEPAICALRHLTSR 282
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 289 ESGVVPRFVEFLMREDY----------PQLQFQAAWALTNIASGTS----------ENTK 328
E G +PR V+ L+R Q QF I G + N
Sbjct: 337 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRI 396
Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
V+ + +P+FV+LL SP ++++ A L +A D
Sbjct: 397 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV+ LG P SVL A+ T+ N
Sbjct: 12 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHN 69
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK--KEVSWIISNIACGNREQIQAVIDA 545
+++ + + G + +ALL +K ++K + + +A GN+E ++ +
Sbjct: 70 LLLHQEGAKXAVRLAGGLQKXVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILAS 126
Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAIS 571
G LVN+ + + E+ W S
Sbjct: 127 GGPQALVNIXRTYTY---EKLLWTTS 149
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 30/192 (15%)
Query: 263 NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASG 322
NN L + + +IES P+ VE Q Q A TN+
Sbjct: 96 NNXALNDKSACVRATAIESTAQRCKKNPIYSPKIVE--------QSQITAFDKSTNVRRA 147
Query: 323 TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLL 382
T+ V+ + +P+ + LL P+ DVR A +A+ D+S RD + L
Sbjct: 148 TAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD------CFVEXL 201
Query: 383 AQLNEHTELSML-----RIATTTLSNLCRG-KPRPLFDQV---------RPALPALAQLI 427
NE + + R LS LC K ++D + + LP L +
Sbjct: 202 QDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTXL 261
Query: 428 HS-NDEQVLTDA 438
+ +D +++T A
Sbjct: 262 YKFDDNEIITSA 273
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 140/347 (40%), Gaps = 43/347 (12%)
Query: 259 WSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVV----------------PRFVEFLMR 302
+ DD L A + KLL+ E P+ + +V P+ V ++R
Sbjct: 10 YQDDAELATRALPELTKLLNDED-PVVVTKAAMIVNQLSKKEASRRALMGSPQLVAAVVR 68
Query: 303 EDYPQLQFQAAWALTNIASGTS---ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALG 359
A T+I S E + + +P V++L+SP + V A+ L
Sbjct: 69 TMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLH 128
Query: 360 NVAADSSGCRDLV-LSEG--ALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQV 416
N+ G + V L++G ++PLL + N L I T L L G +
Sbjct: 129 NLLLYQEGAKMAVRLADGLQKMVPLLNKNNP----KFLAITTDCLQLLAYGNQESKLIIL 184
Query: 417 RPALP-ALAQLIHSND-EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS 474
P AL Q++ + E++L L LS +N A++EAG L + L S
Sbjct: 185 ANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKP--AIVEAGGMQALGKHLTSNS 242
Query: 475 PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN---HKNSIKKEVSWIISNI 531
P ++ LWT+ N+ D T+ + +L +L++ ++ + +SN+
Sbjct: 243 PRLVQNCLWTLRNL---SDVATK----QEGLESVLKILVNQLSVDDVNVLTCATGTLSNL 295
Query: 532 ACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSR 576
C N + V + L++ + A + DI E A A+ + +SR
Sbjct: 296 TCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSR 342
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 62/183 (33%)
Query: 289 ESGVVPRFVEFLMREDYPQLQFQAAWA---------LTNIASGTS----------ENTKV 329
E+ V+PR V+ L++ + AA + I G + N
Sbjct: 397 EAAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRME 456
Query: 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT 389
+ + +P+FV+LL S ++++ A L +A D D + +EGA PL+
Sbjct: 457 IFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAA-DAIDAEGASAPLM------- 508
Query: 390 ELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR 449
+L+HS +E T A LF +S D+
Sbjct: 509 -----------------------------------ELLHSRNEGTATYAAAVLFRISEDK 533
Query: 450 NND 452
N D
Sbjct: 534 NPD 536
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 334 DAVPIFVKLLA-SPSDDVREQAVWALGNVAAD----SSGCRDLVLSEGALIPLLAQLNEH 388
DA+ ++ L+ S D E AL N+ A SSG L+ + +P +A+L +
Sbjct: 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342
Query: 389 TELSMLRIATTTLSNLCRGKPRPLFDQV--RPALPALAQLI------HSNDEQVLTDACW 440
++R + LSN+ R PL +V P + +L+ SN E +L+ AC+
Sbjct: 343 GNSDVVRSGASLLSNMSR---HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACY 399
Query: 441 ALFGL 445
+ L
Sbjct: 400 TVRNL 404
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
E + + +P VK+L SP D V A+ L N+ G + V G L ++A
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 385 LNEHTELSMLRIATTTLSNL 404
LN+ T + L I T L L
Sbjct: 148 LNK-TNVKFLAITTDCLQIL 166
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 66 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 123
Query: 488 IVMGDDFQTQCIINHGAVPCLLALL 512
+++ + + G + ++ALL
Sbjct: 124 LLLHQEGAKMAVRLAGGLQKMVALL 148
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
E + + +P VK+L SP D V A+ L N+ G + V G L ++A
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 385 LNEHTELSMLRIATTTLSNL 404
LN+ T + L I T L L
Sbjct: 148 LNK-TNVKFLAITTDCLQIL 166
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 430 NDEQVLTDACWA--LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
N V T C A L LS R + + A+ ++G LV++LG P SVL A+ T+ N
Sbjct: 66 NTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 123
Query: 488 IVMGDDFQTQCIINHGAVPCLLALL 512
+++ + + G + ++ALL
Sbjct: 124 LLLHQEGAKMAVRLAGGLQKMVALL 148
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVEL 469
F V P LP + L+H DE V A AL L+ NDK++ V V RL EL
Sbjct: 176 FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLAT--LNDKLRKV----VIKRLEEL 226
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 153 SGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLKTWDKEHSAWKD 204
S C +KFP+L+VL + + M G SA +VQL+ D H++ +D
Sbjct: 193 SALCPLKFPTLQVLALRNAG--METPSGVCSALAAARVQLQGLDLSHNSLRD 242
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 282 MPIEEVIESGVVPRFVEFLMRE-DYPQLQFQ--AAWALTNIASGTSENTKVVIEHDAVPI 338
M + E +VP + F+ P +++ A A +I G N + A+P
Sbjct: 353 MLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPT 412
Query: 339 FVKLLASPSDDVREQAVWALGNV 361
++L+ PS VR+ W +G +
Sbjct: 413 LIELMKDPSVVVRDTTAWTVGRI 435
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 414 DQVRPALPALAQLIHSNDEQVLTDACWALFG--LSGDRNNDKIQAVIEAGVCGRLVELLG 471
D V LP + + I + D + DA FG L G N VI+A L+EL+
Sbjct: 362 DIVPHVLPFIKEHIKNPDWR-YRDAAVMAFGSILEGPEPNQLKPLVIQA--MPTLIELMK 418
Query: 472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKNSIKKEVSWIIS 529
PS V WTVG I + + IN + LL LI + + + V W S
Sbjct: 419 DPSVVVRDTTAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475
Query: 530 NIA 532
++A
Sbjct: 476 SLA 478
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 536 REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHD---------QIKYLV 586
RE I + ++ G + N LQ D + E + +GT + ++ + +
Sbjct: 143 RELINSWVETQTNGVIKNFLQPGSVDPQTEMVL-VDAIYFKGTWEKAFKDEDTQEVPFRI 201
Query: 587 TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGL 646
TE KP+ + Q K+ TV E ++ IL++ A G+++ F L ++ GL
Sbjct: 202 TEQESKPVQMMYQAGSFKVATVAAEKMK-ILELPYAS-------GELSMFVLLPDDISGL 253
Query: 647 EKIEN 651
E++E
Sbjct: 254 EQLET 258
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 414 DQVRPALPALAQLIHSNDEQVLTDACWALFG--LSGDRNNDKIQAVIEAGVCGRLVELLG 471
D V LP + + I + D + DA FG L G + VI+A L+EL+
Sbjct: 362 DIVPHVLPFIKEHIKNPDWR-YRDAAVMAFGCILEGPEPSQLKPLVIQA--MPTLIELMK 418
Query: 472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKNSIKKEVSWIIS 529
PS V A WTVG I + + IN + LL LI + + + V W S
Sbjct: 419 DPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475
Query: 530 NIA 532
++A
Sbjct: 476 SLA 478
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 300 LMREDYPQLQFQAAWALTNIASGTSENTKVV-IEHDAVPIFVKLLASPSDDVREQAVWAL 358
++ D L++ A+ + +GT N+ V + H AV + +DDVR AV AL
Sbjct: 539 MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIAL 591
Query: 359 GNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATT-TLSNLCRGK 408
G V +L + +P + QL + + +R T L C GK
Sbjct: 592 GFV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK 632
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 414 DQVRPALPALAQLIHSNDEQVLTDACWALFG--LSGDRNNDKIQAVIEAGVCGRLVELLG 471
D V LP + + I + D + DA FG L G + VI+A L+EL+
Sbjct: 237 DIVPHVLPFIKEHIKNPDWR-YRDAAVMAFGCILEGPEPSQLKPLVIQA--MPTLIELMK 293
Query: 472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKNSIKKEVSWIIS 529
PS V A WTVG I + + IN + LL LI + + + V W S
Sbjct: 294 DPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 350
Query: 530 NIA 532
++A
Sbjct: 351 SLA 353
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 289 ESGVVPRFVEFLMRE-DYPQLQFQ--AAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS 345
E +VP + F+ P +++ A A I G + + A+P ++L+
Sbjct: 235 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 346 PSDDVREQAVWALGNV 361
PS VR+ A W +G +
Sbjct: 295 PSVVVRDTAAWTVGRI 310
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 414 DQVRPALPALAQLIHSNDEQVLTDACWALFG--LSGDRNNDKIQAVIEAGVCGRLVELLG 471
D V LP + + I + D + DA FG L G + VI+A L+EL+
Sbjct: 362 DIVPHVLPFIKEHIKNPDWR-YRDAAVMAFGCILEGPEPSQLKPLVIQA--MPTLIELMK 418
Query: 472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKNSIKKEVSWIIS 529
PS V A WTVG I + + IN + LL LI + + + V W S
Sbjct: 419 DPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475
Query: 530 NIA 532
++A
Sbjct: 476 SLA 478
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 289 ESGVVPRFVEFLMRE-DYPQLQFQ--AAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS 345
E +VP + F+ P +++ A A I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 346 PSDDVREQAVWALGNV 361
PS VR+ A W +G +
Sbjct: 420 PSVVVRDTAAWTVGRI 435
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 414 DQVRPALPALAQLIHSNDEQVLTDACWALFG--LSGDRNNDKIQAVIEAGVCGRLVELLG 471
D V LP + + I + D + DA FG L G + VI+A L+EL+
Sbjct: 362 DIVPHVLPFIKEHIKNPDWR-YRDAAVMAFGCILEGPEPSQLKPLVIQA--MPTLIELMK 418
Query: 472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKNSIKKEVSWIIS 529
PS V A WTVG I + + IN + LL LI + + + V W S
Sbjct: 419 DPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475
Query: 530 NIA 532
++A
Sbjct: 476 SLA 478
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 289 ESGVVPRFVEFLMRE-DYPQLQFQ--AAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS 345
E +VP + F+ P +++ A A I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 346 PSDDVREQAVWALGNV 361
PS VR+ A W +G +
Sbjct: 420 PSVVVRDTAAWTVGRI 435
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 289 ESGVVPRFVEFLMRE-DYPQLQFQ--AAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS 345
E +VP + F+ P +++ A A I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 346 PSDDVREQAVWALGNV 361
PS VR+ A W +G +
Sbjct: 420 PSVVVRDTAAWTVGRI 435
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,313,419
Number of Sequences: 62578
Number of extensions: 772174
Number of successful extensions: 2956
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1863
Number of HSP's gapped (non-prelim): 214
length of query: 684
length of database: 14,973,337
effective HSP length: 105
effective length of query: 579
effective length of database: 8,402,647
effective search space: 4865132613
effective search space used: 4865132613
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)