Query 035507
Match_columns 684
No_of_seqs 513 out of 2892
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:31:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 3.3E-79 7.1E-84 579.4 33.6 475 199-681 23-504 (526)
2 KOG0166 Karyopherin (importin) 100.0 2.3E-76 5E-81 607.5 46.7 479 189-679 11-492 (514)
3 KOG0166 Karyopherin (importin) 100.0 2.4E-44 5.3E-49 370.8 34.5 372 247-622 107-490 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 1.2E-44 2.5E-49 344.3 25.5 399 204-620 83-498 (526)
5 PLN03200 cellulose synthase-in 100.0 6.3E-39 1.4E-43 376.7 44.7 406 247-675 187-640 (2102)
6 PLN03200 cellulose synthase-in 100.0 1.6E-37 3.5E-42 365.0 44.0 416 249-675 404-862 (2102)
7 KOG4224 Armadillo repeat prote 100.0 3.8E-28 8.2E-33 233.8 22.7 362 250-621 86-449 (550)
8 KOG4224 Armadillo repeat prote 100.0 2.4E-27 5.1E-32 228.3 25.5 364 247-621 124-496 (550)
9 PF05804 KAP: Kinesin-associat 99.9 4E-22 8.7E-27 218.4 39.2 388 252-669 253-645 (708)
10 PF05804 KAP: Kinesin-associat 99.9 5.1E-22 1.1E-26 217.6 33.4 415 246-681 287-706 (708)
11 KOG0168 Putative ubiquitin fus 99.8 3.2E-18 6.9E-23 181.7 27.8 389 250-656 168-655 (1051)
12 KOG1048 Neural adherens juncti 99.8 2.6E-18 5.6E-23 183.9 21.9 404 250-677 234-688 (717)
13 PF10508 Proteasom_PSMB: Prote 99.7 6.3E-14 1.4E-18 152.9 37.6 396 253-672 42-461 (503)
14 PF10508 Proteasom_PSMB: Prote 99.7 2E-13 4.4E-18 149.0 38.6 367 294-674 41-421 (503)
15 PRK09687 putative lyase; Provi 99.6 2.5E-14 5.5E-19 143.3 22.5 255 292-615 24-279 (280)
16 KOG4199 Uncharacterized conser 99.6 7.7E-14 1.7E-18 134.4 24.5 311 258-575 116-444 (461)
17 KOG4500 Rho/Rac GTPase guanine 99.6 5.2E-14 1.1E-18 139.6 21.1 351 263-621 56-434 (604)
18 KOG1222 Kinesin associated pro 99.6 3.4E-12 7.3E-17 128.4 31.8 376 262-667 276-657 (791)
19 KOG4199 Uncharacterized conser 99.6 3.4E-12 7.3E-17 123.2 30.3 318 289-616 102-442 (461)
20 PRK09687 putative lyase; Provi 99.6 2.9E-13 6.3E-18 135.6 24.0 253 250-571 24-278 (280)
21 KOG4500 Rho/Rac GTPase guanine 99.6 1.9E-12 4.2E-17 128.7 26.2 368 248-620 86-477 (604)
22 KOG2122 Beta-catenin-binding p 99.6 2.2E-13 4.7E-18 151.9 21.4 328 245-576 231-602 (2195)
23 KOG2171 Karyopherin (importin) 99.6 6.2E-12 1.3E-16 140.0 32.7 395 249-668 118-541 (1075)
24 KOG2122 Beta-catenin-binding p 99.5 7.9E-13 1.7E-17 147.5 24.1 364 251-620 199-603 (2195)
25 KOG1048 Neural adherens juncti 99.5 3.6E-13 7.9E-18 144.7 20.5 364 246-619 272-685 (717)
26 PRK13800 putative oxidoreducta 99.5 4.4E-12 9.5E-17 148.4 30.5 276 249-615 621-896 (897)
27 PF04826 Arm_2: Armadillo-like 99.5 1.7E-12 3.8E-17 127.0 22.5 238 417-664 11-253 (254)
28 KOG1293 Proteins containing ar 99.5 2.8E-11 6E-16 127.1 31.1 405 254-674 14-534 (678)
29 KOG2171 Karyopherin (importin) 99.5 3.8E-11 8.2E-16 133.9 33.3 396 250-669 37-500 (1075)
30 KOG2023 Nuclear transport rece 99.5 2.7E-12 5.9E-17 133.8 19.3 348 249-618 128-546 (885)
31 PRK13800 putative oxidoreducta 99.5 2.8E-11 6.1E-16 141.7 29.0 278 289-670 619-896 (897)
32 KOG1222 Kinesin associated pro 99.5 1E-10 2.2E-15 117.9 28.6 359 249-623 304-668 (791)
33 PF04826 Arm_2: Armadillo-like 99.4 5.9E-12 1.3E-16 123.3 19.1 196 288-491 9-206 (254)
34 KOG1293 Proteins containing ar 99.4 9E-11 2E-15 123.3 26.1 373 246-622 48-537 (678)
35 KOG2023 Nuclear transport rece 99.4 7E-11 1.5E-15 123.5 22.8 317 291-621 128-508 (885)
36 cd00020 ARM Armadillo/beta-cat 99.4 1.6E-11 3.5E-16 107.6 14.1 117 457-574 3-119 (120)
37 cd00020 ARM Armadillo/beta-cat 99.4 1E-11 2.3E-16 108.8 12.9 119 286-406 2-120 (120)
38 PF01602 Adaptin_N: Adaptin N 99.3 1.7E-10 3.7E-15 129.0 24.1 356 250-672 80-443 (526)
39 PF01602 Adaptin_N: Adaptin N 99.3 4.6E-10 1E-14 125.5 26.4 331 249-622 42-373 (526)
40 cd00256 VATPase_H VATPase_H, r 99.2 5.5E-09 1.2E-13 109.0 27.8 322 334-672 53-424 (429)
41 cd00256 VATPase_H VATPase_H, r 99.2 3.8E-09 8.2E-14 110.2 24.4 279 250-533 102-425 (429)
42 KOG0168 Putative ubiquitin fus 99.2 4.8E-09 1E-13 112.9 25.4 342 250-599 212-653 (1051)
43 PTZ00429 beta-adaptin; Provisi 99.2 8.9E-08 1.9E-12 107.7 36.0 261 249-536 68-329 (746)
44 PTZ00429 beta-adaptin; Provisi 99.2 3.2E-07 7E-12 103.2 38.2 294 249-575 32-326 (746)
45 KOG1241 Karyopherin (importin) 99.1 3.8E-08 8.2E-13 105.2 24.4 361 250-619 365-764 (859)
46 KOG1241 Karyopherin (importin) 99.0 8E-08 1.7E-12 102.8 25.5 360 253-623 94-482 (859)
47 KOG0946 ER-Golgi vesicle-tethe 99.0 7.3E-07 1.6E-11 95.9 29.5 326 291-623 22-404 (970)
48 KOG2160 Armadillo/beta-catenin 99.0 1.5E-07 3.3E-12 93.7 22.5 190 429-621 94-285 (342)
49 KOG2759 Vacuolar H+-ATPase V1 99.0 5.6E-08 1.2E-12 97.8 18.9 276 251-533 116-438 (442)
50 KOG0946 ER-Golgi vesicle-tethe 98.9 1.2E-06 2.5E-11 94.4 28.8 328 244-577 17-401 (970)
51 PF03224 V-ATPase_H_N: V-ATPas 98.9 5.2E-08 1.1E-12 100.4 18.1 228 336-567 57-306 (312)
52 KOG1059 Vesicle coat complex A 98.9 4E-06 8.8E-11 89.5 31.0 219 250-491 145-366 (877)
53 KOG2160 Armadillo/beta-catenin 98.9 1.1E-07 2.4E-12 94.6 17.8 186 259-446 93-281 (342)
54 KOG2759 Vacuolar H+-ATPase V1 98.9 1.9E-06 4.2E-11 86.9 26.2 325 292-619 66-439 (442)
55 KOG0212 Uncharacterized conser 98.8 7E-07 1.5E-11 92.7 21.0 389 200-622 12-410 (675)
56 KOG0213 Splicing factor 3b, su 98.8 1.8E-06 3.9E-11 92.1 24.2 269 336-619 801-1108(1172)
57 PF03224 V-ATPase_H_N: V-ATPas 98.8 2.8E-07 6E-12 95.1 17.4 230 421-668 58-309 (312)
58 KOG1062 Vesicle coat complex A 98.8 2.8E-06 6E-11 92.0 25.1 369 250-668 143-539 (866)
59 COG5215 KAP95 Karyopherin (imp 98.7 3.3E-06 7.2E-11 87.7 22.3 356 249-618 321-711 (858)
60 KOG1824 TATA-binding protein-i 98.7 9.4E-06 2E-10 89.1 25.2 354 253-621 9-405 (1233)
61 COG5215 KAP95 Karyopherin (imp 98.7 4.1E-06 8.9E-11 87.1 21.3 361 252-622 224-672 (858)
62 KOG1789 Endocytosis protein RM 98.6 5.8E-05 1.3E-09 83.6 29.9 330 265-600 1741-2141(2235)
63 KOG1061 Vesicle coat complex A 98.6 5.5E-06 1.2E-10 89.9 21.4 305 292-621 122-456 (734)
64 KOG3678 SARM protein (with ste 98.6 2.6E-06 5.6E-11 86.4 17.6 272 284-573 173-450 (832)
65 KOG1242 Protein containing ada 98.6 2.9E-05 6.3E-10 82.6 26.2 315 292-623 97-449 (569)
66 KOG1242 Protein containing ada 98.6 1.3E-05 2.9E-10 85.1 23.5 302 250-576 135-445 (569)
67 KOG1062 Vesicle coat complex A 98.6 4.1E-05 9E-10 83.2 27.3 120 463-601 315-434 (866)
68 KOG1517 Guanine nucleotide bin 98.6 3.8E-06 8.3E-11 92.9 19.1 272 265-548 452-747 (1387)
69 TIGR02270 conserved hypothetic 98.6 2E-05 4.3E-10 83.2 23.8 241 250-575 55-296 (410)
70 KOG3678 SARM protein (with ste 98.5 2.9E-06 6.3E-11 86.1 16.3 269 248-533 179-452 (832)
71 KOG4413 26S proteasome regulat 98.5 0.00013 2.7E-09 71.4 25.9 339 250-597 83-460 (524)
72 KOG1061 Vesicle coat complex A 98.5 2.9E-05 6.3E-10 84.4 23.5 342 249-623 49-420 (734)
73 KOG1517 Guanine nucleotide bin 98.5 6.6E-06 1.4E-10 91.1 18.3 256 249-508 472-750 (1387)
74 KOG1824 TATA-binding protein-i 98.5 9.5E-05 2.1E-09 81.6 26.2 407 250-671 48-597 (1233)
75 COG5181 HSH155 U2 snRNP splice 98.4 5.8E-05 1.3E-09 79.4 23.3 299 292-620 605-914 (975)
76 KOG2973 Uncharacterized conser 98.4 3.1E-05 6.7E-10 75.2 19.4 271 251-533 5-315 (353)
77 KOG1059 Vesicle coat complex A 98.4 0.00061 1.3E-08 73.4 29.8 257 292-579 145-405 (877)
78 KOG2973 Uncharacterized conser 98.4 0.00021 4.6E-09 69.5 23.6 273 379-675 6-317 (353)
79 PF05536 Neurochondrin: Neuroc 98.4 0.00028 6E-09 77.7 27.5 194 249-446 5-212 (543)
80 COG5369 Uncharacterized conser 98.3 4.1E-06 8.8E-11 86.6 11.6 304 353-670 408-738 (743)
81 TIGR02270 conserved hypothetic 98.3 0.0001 2.2E-09 77.9 22.3 245 291-620 54-298 (410)
82 KOG0211 Protein phosphatase 2A 98.3 0.00013 2.8E-09 81.8 24.0 382 250-668 277-659 (759)
83 KOG0213 Splicing factor 3b, su 98.3 5.7E-05 1.2E-09 81.0 19.9 333 251-623 801-1146(1172)
84 COG5369 Uncharacterized conser 98.3 3.9E-06 8.4E-11 86.7 10.9 304 264-573 403-739 (743)
85 COG5181 HSH155 U2 snRNP splice 98.3 5.7E-05 1.2E-09 79.4 19.5 335 250-623 605-951 (975)
86 COG1413 FOG: HEAT repeat [Ener 98.2 0.00041 8.8E-09 72.6 25.0 250 249-575 43-304 (335)
87 KOG0212 Uncharacterized conser 98.2 8E-05 1.7E-09 77.8 18.5 319 249-578 84-409 (675)
88 KOG4413 26S proteasome regulat 98.2 0.00025 5.4E-09 69.3 20.5 301 247-553 126-459 (524)
89 COG1413 FOG: HEAT repeat [Ener 98.2 0.00021 4.5E-09 74.8 21.3 250 291-618 43-304 (335)
90 KOG1077 Vesicle coat complex A 98.2 0.0026 5.6E-08 68.5 28.7 325 252-609 77-424 (938)
91 KOG1060 Vesicle coat complex A 98.2 0.00094 2E-08 72.7 25.5 325 250-623 109-463 (968)
92 PF01749 IBB: Importin beta bi 98.2 1.5E-06 3.3E-11 71.7 3.6 74 198-271 20-96 (97)
93 KOG1789 Endocytosis protein RM 98.1 0.00064 1.4E-08 75.7 24.0 304 247-558 1769-2142(2235)
94 KOG1060 Vesicle coat complex A 98.1 0.0021 4.5E-08 70.1 26.6 171 252-446 38-208 (968)
95 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00034 7.5E-09 73.1 20.2 339 272-621 6-367 (371)
96 PF00514 Arm: Armadillo/beta-c 98.1 5.4E-06 1.2E-10 56.7 4.4 41 323-363 1-41 (41)
97 PF00514 Arm: Armadillo/beta-c 98.0 1.1E-05 2.5E-10 55.1 4.9 40 493-533 2-41 (41)
98 KOG1240 Protein kinase contain 98.0 0.00021 4.6E-09 81.0 17.0 270 251-533 424-725 (1431)
99 KOG1077 Vesicle coat complex A 98.0 0.0061 1.3E-07 65.8 26.8 295 250-575 112-433 (938)
100 KOG0211 Protein phosphatase 2A 98.0 0.0016 3.4E-08 73.3 23.8 383 251-672 239-624 (759)
101 PF14664 RICTOR_N: Rapamycin-i 98.0 0.0012 2.6E-08 69.1 21.3 315 335-672 26-363 (371)
102 KOG2259 Uncharacterized conser 98.0 0.00019 4.2E-09 76.4 15.1 252 336-611 200-468 (823)
103 COG5231 VMA13 Vacuolar H+-ATPa 97.9 0.00049 1.1E-08 67.2 15.6 223 306-532 163-427 (432)
104 KOG0915 Uncharacterized conser 97.9 0.0043 9.4E-08 72.5 25.3 341 265-621 973-1347(1702)
105 KOG1943 Beta-tubulin folding c 97.9 0.0088 1.9E-07 67.8 26.6 232 334-575 341-611 (1133)
106 KOG4646 Uncharacterized conser 97.8 0.0001 2.3E-09 62.6 8.6 114 292-408 17-130 (173)
107 PF13646 HEAT_2: HEAT repeats; 97.8 4.8E-05 1E-09 62.2 6.6 87 293-402 1-88 (88)
108 KOG4658 Apoptotic ATPase [Sign 97.8 7.2E-06 1.6E-10 94.8 1.6 105 75-184 746-852 (889)
109 KOG4646 Uncharacterized conser 97.8 0.00061 1.3E-08 58.1 12.5 153 504-672 17-169 (173)
110 KOG2259 Uncharacterized conser 97.8 0.0013 2.8E-08 70.4 17.6 222 381-621 203-442 (823)
111 PF12348 CLASP_N: CLASP N term 97.8 0.00023 5E-09 70.0 11.4 181 258-446 16-205 (228)
112 KOG1240 Protein kinase contain 97.8 0.0018 3.9E-08 73.8 19.2 291 336-670 424-722 (1431)
113 PF05536 Neurochondrin: Neuroc 97.8 0.003 6.5E-08 69.7 21.0 234 336-575 7-261 (543)
114 PF10165 Ric8: Guanine nucleot 97.7 0.005 1.1E-07 66.5 22.2 262 275-538 6-342 (446)
115 PF13646 HEAT_2: HEAT repeats; 97.7 0.00012 2.7E-09 59.7 7.8 87 420-529 1-88 (88)
116 PF13513 HEAT_EZ: HEAT-like re 97.7 7.4E-05 1.6E-09 54.9 5.7 55 518-573 1-55 (55)
117 KOG0915 Uncharacterized conser 97.7 0.0024 5.2E-08 74.5 20.2 333 250-606 819-1189(1702)
118 KOG2062 26S proteasome regulat 97.7 0.0021 4.5E-08 69.7 17.7 265 291-604 413-680 (929)
119 KOG1058 Vesicle coat complex C 97.7 0.015 3.3E-07 63.3 24.1 327 291-676 134-466 (948)
120 PF12348 CLASP_N: CLASP N term 97.7 0.00053 1.1E-08 67.4 12.7 187 427-622 16-210 (228)
121 PF12460 MMS19_C: RNAPII trans 97.7 0.053 1.1E-06 58.4 28.8 348 252-621 2-397 (415)
122 COG5240 SEC21 Vesicle coat com 97.6 0.0044 9.6E-08 65.3 18.5 142 292-446 265-406 (898)
123 COG5096 Vesicle coat complex, 97.6 0.023 5E-07 63.6 25.4 141 250-407 56-196 (757)
124 KOG1991 Nuclear transport rece 97.6 0.069 1.5E-06 60.4 28.6 281 291-581 410-717 (1010)
125 PF12755 Vac14_Fab1_bd: Vacuol 97.6 0.0006 1.3E-08 56.3 9.3 95 520-618 2-96 (97)
126 COG5240 SEC21 Vesicle coat com 97.5 0.16 3.5E-06 54.0 27.3 305 314-671 249-553 (898)
127 KOG0567 HEAT repeat-containing 97.5 0.014 3.1E-07 56.0 18.2 241 263-574 19-279 (289)
128 KOG1943 Beta-tubulin folding c 97.5 0.075 1.6E-06 60.6 26.4 309 250-575 342-705 (1133)
129 KOG4535 HEAT and armadillo rep 97.4 0.0013 2.7E-08 67.8 11.6 300 306-614 269-599 (728)
130 KOG1058 Vesicle coat complex C 97.4 0.067 1.4E-06 58.6 24.7 139 252-407 23-164 (948)
131 KOG1248 Uncharacterized conser 97.4 0.1 2.2E-06 60.3 27.4 235 380-620 657-900 (1176)
132 COG5231 VMA13 Vacuolar H+-ATPa 97.4 0.016 3.5E-07 56.9 18.1 235 423-673 154-428 (432)
133 KOG2734 Uncharacterized conser 97.4 0.053 1.1E-06 55.8 22.4 245 414-673 121-400 (536)
134 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00018 3.8E-09 52.9 3.8 55 306-361 1-55 (55)
135 COG5096 Vesicle coat complex, 97.4 0.051 1.1E-06 61.0 24.3 106 248-364 91-196 (757)
136 PF12460 MMS19_C: RNAPII trans 97.3 0.095 2E-06 56.5 25.5 304 262-577 56-396 (415)
137 KOG2734 Uncharacterized conser 97.3 0.016 3.5E-07 59.5 17.9 222 247-470 123-370 (536)
138 KOG4535 HEAT and armadillo rep 97.3 0.002 4.4E-08 66.3 10.7 274 254-533 300-603 (728)
139 smart00185 ARM Armadillo/beta- 97.2 0.00071 1.5E-08 46.0 5.1 39 324-362 2-40 (41)
140 KOG1078 Vesicle coat complex C 97.2 0.023 5E-07 62.4 18.1 70 292-367 246-315 (865)
141 KOG4151 Myosin assembly protei 97.1 0.019 4.2E-07 63.4 17.3 222 368-597 496-720 (748)
142 KOG0567 HEAT repeat-containing 97.1 0.036 7.8E-07 53.3 16.5 256 294-617 6-279 (289)
143 KOG2274 Predicted importin 9 [ 97.1 0.15 3.2E-06 57.2 23.2 233 302-543 460-699 (1005)
144 PF12755 Vac14_Fab1_bd: Vacuol 97.1 0.0057 1.2E-07 50.5 9.5 93 478-574 3-95 (97)
145 smart00185 ARM Armadillo/beta- 97.0 0.0016 3.5E-08 44.2 5.3 39 494-533 3-41 (41)
146 KOG1991 Nuclear transport rece 97.0 0.22 4.8E-06 56.6 24.0 349 262-623 431-805 (1010)
147 KOG1078 Vesicle coat complex C 96.9 0.39 8.4E-06 53.3 24.5 213 250-493 101-314 (865)
148 PF10165 Ric8: Guanine nucleot 96.9 0.13 2.8E-06 55.7 20.9 229 259-490 42-337 (446)
149 KOG1248 Uncharacterized conser 96.8 1.7 3.7E-05 50.7 30.4 220 426-671 662-896 (1176)
150 PF12717 Cnd1: non-SMC mitotic 96.6 0.076 1.6E-06 49.8 14.9 93 474-576 1-93 (178)
151 KOG2274 Predicted importin 9 [ 96.6 1.8 3.9E-05 49.1 28.2 228 343-579 459-693 (1005)
152 PF12717 Cnd1: non-SMC mitotic 96.6 0.11 2.5E-06 48.6 15.9 93 431-534 1-93 (178)
153 PF09759 Atx10homo_assoc: Spin 96.6 0.0056 1.2E-07 50.6 6.0 65 309-373 3-69 (102)
154 PF09759 Atx10homo_assoc: Spin 96.6 0.016 3.5E-07 47.9 8.7 67 477-543 2-69 (102)
155 PF08569 Mo25: Mo25-like; Int 96.5 0.086 1.9E-06 54.3 15.6 202 329-533 71-283 (335)
156 KOG3665 ZYG-1-like serine/thre 96.5 0.32 6.8E-06 55.5 21.5 175 484-672 494-696 (699)
157 PF05004 IFRD: Interferon-rela 96.5 0.31 6.7E-06 49.9 19.6 197 420-622 45-261 (309)
158 KOG2025 Chromosome condensatio 96.5 0.22 4.7E-06 54.5 18.5 108 414-528 81-188 (892)
159 KOG0414 Chromosome condensatio 96.5 0.078 1.7E-06 61.1 15.9 164 398-578 898-1067(1251)
160 COG5116 RPN2 26S proteasome re 96.4 0.13 2.8E-06 54.6 16.2 152 422-601 520-674 (926)
161 KOG2062 26S proteasome regulat 96.4 0.51 1.1E-05 51.9 20.9 169 462-669 520-690 (929)
162 PF11841 DUF3361: Domain of un 96.4 0.098 2.1E-06 47.0 13.1 131 454-585 4-141 (160)
163 KOG1967 DNA repair/transcripti 96.4 0.02 4.3E-07 64.0 10.5 190 335-530 816-1021(1030)
164 KOG4151 Myosin assembly protei 96.3 0.026 5.7E-07 62.4 11.0 216 248-469 503-720 (748)
165 PF08569 Mo25: Mo25-like; Int 96.3 0.31 6.7E-06 50.2 17.8 205 455-672 70-282 (335)
166 PRK14707 hypothetical protein; 96.3 2.9 6.3E-05 51.8 27.5 386 263-672 137-528 (2710)
167 PF05004 IFRD: Interferon-rela 96.2 0.31 6.8E-06 49.9 17.3 192 336-533 45-257 (309)
168 PF05918 API5: Apoptosis inhib 96.1 0.76 1.6E-05 50.3 20.2 290 296-621 28-348 (556)
169 KOG4653 Uncharacterized conser 96.1 0.3 6.5E-06 54.6 17.1 227 380-619 731-965 (982)
170 PF04078 Rcd1: Cell differenti 96.1 0.14 3.1E-06 49.7 13.1 186 431-620 8-220 (262)
171 KOG4653 Uncharacterized conser 96.0 0.15 3.2E-06 57.0 14.7 223 297-531 733-962 (982)
172 PF11864 DUF3384: Domain of un 96.0 3.2 7E-05 45.3 33.0 288 263-575 4-330 (464)
173 COG5656 SXM1 Importin, protein 95.8 2.6 5.6E-05 46.8 22.5 300 268-580 389-716 (970)
174 PF11698 V-ATPase_H_C: V-ATPas 95.8 0.017 3.6E-07 49.1 4.8 71 292-362 44-114 (119)
175 KOG3036 Protein involved in ce 95.7 0.4 8.6E-06 45.8 14.2 144 264-408 94-249 (293)
176 KOG1967 DNA repair/transcripti 95.7 0.21 4.6E-06 56.2 14.3 155 417-575 866-1024(1030)
177 PF11841 DUF3361: Domain of un 95.5 0.33 7.2E-06 43.7 12.4 126 369-495 4-136 (160)
178 PF12719 Cnd3: Nuclear condens 95.5 0.4 8.8E-06 49.0 15.1 111 461-577 26-145 (298)
179 PF11698 V-ATPase_H_C: V-ATPas 95.5 0.023 5.1E-07 48.2 4.7 72 461-533 43-115 (119)
180 KOG3036 Protein involved in ce 95.5 2.1 4.4E-05 41.2 17.8 139 478-619 96-248 (293)
181 PF05918 API5: Apoptosis inhib 95.4 0.81 1.7E-05 50.1 17.4 269 249-542 59-354 (556)
182 KOG3665 ZYG-1-like serine/thre 95.4 0.84 1.8E-05 52.1 18.4 195 357-571 494-693 (699)
183 PF06025 DUF913: Domain of Unk 95.4 0.5 1.1E-05 49.8 15.5 215 311-544 3-243 (379)
184 KOG2032 Uncharacterized conser 95.4 1.2 2.6E-05 47.1 17.6 269 332-618 252-531 (533)
185 PRK14707 hypothetical protein; 95.4 11 0.00023 47.2 29.5 402 250-672 206-612 (2710)
186 KOG2611 Neurochondrin/leucine- 95.4 2 4.3E-05 45.1 18.9 233 251-490 13-274 (698)
187 KOG2956 CLIP-associating prote 95.3 1.1 2.5E-05 46.8 17.1 172 392-575 302-477 (516)
188 KOG0414 Chromosome condensatio 95.2 0.17 3.6E-06 58.5 11.6 144 462-621 920-1067(1251)
189 PF13764 E3_UbLigase_R4: E3 ub 95.2 7.8 0.00017 44.8 24.9 242 288-533 114-406 (802)
190 KOG2032 Uncharacterized conser 95.1 5.4 0.00012 42.3 21.4 249 417-671 257-529 (533)
191 KOG1243 Protein kinase [Genera 95.1 0.72 1.6E-05 50.8 15.8 194 415-623 327-520 (690)
192 PF13764 E3_UbLigase_R4: E3 ub 95.1 3.9 8.5E-05 47.1 22.3 240 417-675 116-408 (802)
193 KOG2956 CLIP-associating prote 95.1 0.86 1.9E-05 47.7 15.3 147 378-533 331-477 (516)
194 PF14668 RICTOR_V: Rapamycin-i 95.0 0.17 3.7E-06 39.1 7.7 66 521-589 4-70 (73)
195 COG5656 SXM1 Importin, protein 95.0 7.8 0.00017 43.2 25.8 300 311-624 389-717 (970)
196 PF12719 Cnd3: Nuclear condens 94.9 2.1 4.5E-05 43.8 18.1 172 417-601 25-209 (298)
197 PF02985 HEAT: HEAT repeat; I 94.8 0.042 9.2E-07 34.6 3.3 28 336-363 2-29 (31)
198 PF06371 Drf_GBD: Diaphanous G 94.6 0.13 2.8E-06 48.6 7.9 110 250-362 67-186 (187)
199 KOG1820 Microtubule-associated 94.6 1.2 2.7E-05 51.1 16.5 185 252-446 256-442 (815)
200 PF02985 HEAT: HEAT repeat; I 94.5 0.049 1.1E-06 34.3 3.2 29 504-533 1-29 (31)
201 PF11707 Npa1: Ribosome 60S bi 94.3 7.1 0.00015 40.5 20.6 160 505-674 58-238 (330)
202 PF04078 Rcd1: Cell differenti 94.3 0.96 2.1E-05 44.1 12.8 175 268-445 69-260 (262)
203 PF11865 DUF3385: Domain of un 94.1 0.39 8.5E-06 43.9 9.4 147 291-446 10-156 (160)
204 PF06025 DUF913: Domain of Unk 94.1 1.6 3.4E-05 46.1 15.1 119 480-600 79-207 (379)
205 PF11701 UNC45-central: Myosin 94.0 0.62 1.4E-05 42.5 10.7 136 429-572 16-156 (157)
206 PF08045 CDC14: Cell division 94.0 0.77 1.7E-05 45.0 11.7 101 265-365 107-209 (257)
207 KOG2025 Chromosome condensatio 94.0 5.3 0.00011 44.3 18.7 106 290-402 84-189 (892)
208 COG5218 YCG1 Chromosome conden 93.9 4.5 9.7E-05 43.8 17.6 109 413-528 86-194 (885)
209 COG5098 Chromosome condensatio 93.7 1.3 2.9E-05 48.4 13.6 144 417-577 891-1039(1128)
210 KOG1243 Protein kinase [Genera 93.6 1.8 3.9E-05 47.9 14.6 257 252-532 257-514 (690)
211 KOG1566 Conserved protein Mo25 93.5 9 0.0002 38.4 18.2 201 371-577 74-288 (342)
212 PF14668 RICTOR_V: Rapamycin-i 93.5 0.46 1E-05 36.7 7.3 66 478-545 4-69 (73)
213 COG5116 RPN2 26S proteasome re 93.4 0.87 1.9E-05 48.7 11.5 156 253-433 520-677 (926)
214 PF13251 DUF4042: Domain of un 93.4 3.6 7.9E-05 38.3 14.5 131 292-446 40-173 (182)
215 KOG1820 Microtubule-associated 93.3 2.6 5.7E-05 48.6 16.0 187 337-533 256-443 (815)
216 PF08506 Cse1: Cse1; InterPro 92.9 3.4 7.4E-05 43.5 15.3 128 432-570 225-370 (370)
217 PF08045 CDC14: Cell division 92.9 1.7 3.6E-05 42.8 12.0 99 477-575 107-207 (257)
218 COG5098 Chromosome condensatio 92.9 0.39 8.4E-06 52.4 8.1 146 462-623 893-1042(1128)
219 PLN03076 ARF guanine nucleotid 92.8 14 0.00031 46.7 22.5 100 260-364 1148-1254(1780)
220 PF07814 WAPL: Wings apart-lik 92.8 5.7 0.00012 41.8 16.8 274 293-576 23-356 (361)
221 PF11701 UNC45-central: Myosin 92.7 1.2 2.6E-05 40.6 10.4 136 472-615 16-156 (157)
222 PF12231 Rif1_N: Rap1-interact 92.5 16 0.00035 38.7 19.9 307 259-575 3-352 (372)
223 KOG2999 Regulator of Rac1, req 92.4 3.5 7.5E-05 44.2 14.1 157 250-409 84-245 (713)
224 KOG1020 Sister chromatid cohes 92.3 33 0.00072 41.8 29.0 151 466-622 1126-1299(1692)
225 KOG1822 Uncharacterized conser 92.3 37 0.0008 42.4 23.8 273 336-618 878-1189(2067)
226 KOG2999 Regulator of Rac1, req 92.3 5.3 0.00012 42.9 15.3 165 419-586 84-253 (713)
227 KOG1566 Conserved protein Mo25 92.1 11 0.00023 37.9 16.2 204 328-533 73-286 (342)
228 PF12726 SEN1_N: SEN1 N termin 91.8 31 0.00068 40.2 24.0 114 547-675 442-555 (727)
229 PF14500 MMS19_N: Dos2-interac 91.7 15 0.00033 36.6 18.8 224 338-579 3-241 (262)
230 KOG1020 Sister chromatid cohes 91.4 42 0.0009 41.0 35.4 143 250-408 817-962 (1692)
231 PF11864 DUF3384: Domain of un 91.1 27 0.00059 38.2 25.7 252 262-532 42-329 (464)
232 PF04063 DUF383: Domain of unk 90.7 2.5 5.3E-05 39.9 10.2 124 429-556 6-157 (192)
233 PF01603 B56: Protein phosphat 90.6 10 0.00022 40.6 16.2 255 270-540 111-377 (409)
234 KOG2137 Protein kinase [Signal 90.6 24 0.00053 39.5 18.8 160 412-581 383-545 (700)
235 PLN03076 ARF guanine nucleotid 90.6 34 0.00074 43.5 22.3 269 344-622 1147-1493(1780)
236 PF11707 Npa1: Ribosome 60S bi 90.5 24 0.00052 36.6 22.5 157 463-619 58-238 (330)
237 PF14500 MMS19_N: Dos2-interac 90.3 21 0.00045 35.6 17.7 214 296-533 4-237 (262)
238 PF10363 DUF2435: Protein of u 90.3 0.73 1.6E-05 37.6 5.5 83 250-343 4-86 (92)
239 PF13251 DUF4042: Domain of un 90.2 6.8 0.00015 36.5 12.5 146 476-622 1-178 (182)
240 KOG1949 Uncharacterized conser 90.1 36 0.00077 38.1 19.2 235 416-676 127-374 (1005)
241 PF14225 MOR2-PAG1_C: Cell mor 90.0 22 0.00047 35.4 17.4 179 291-492 64-256 (262)
242 KOG1949 Uncharacterized conser 90.0 8.2 0.00018 42.7 14.4 187 419-618 175-370 (1005)
243 KOG2933 Uncharacterized conser 89.9 2.3 5.1E-05 42.3 9.5 142 463-618 90-234 (334)
244 PF01347 Vitellogenin_N: Lipop 89.8 5.2 0.00011 45.7 14.1 197 292-524 396-613 (618)
245 PF12530 DUF3730: Protein of u 89.5 22 0.00048 34.8 19.3 139 293-446 2-150 (234)
246 PF12830 Nipped-B_C: Sister ch 89.2 7.1 0.00015 36.8 12.2 146 250-408 9-169 (187)
247 KOG0413 Uncharacterized conser 89.0 51 0.0011 38.3 23.5 130 476-622 946-1077(1529)
248 PF07814 WAPL: Wings apart-lik 88.9 15 0.00032 38.7 15.4 241 336-587 23-310 (361)
249 KOG2933 Uncharacterized conser 88.7 5.7 0.00012 39.7 11.2 146 417-576 87-235 (334)
250 COG5218 YCG1 Chromosome conden 88.3 12 0.00027 40.6 14.0 110 248-367 90-200 (885)
251 PF10363 DUF2435: Protein of u 88.0 2.1 4.7E-05 34.9 6.7 84 463-557 5-88 (92)
252 PF08506 Cse1: Cse1; InterPro 88.0 16 0.00034 38.5 14.9 146 457-612 206-369 (370)
253 PF01603 B56: Protein phosphat 87.9 27 0.0006 37.4 17.0 231 330-575 129-370 (409)
254 PF04063 DUF383: Domain of unk 87.6 7.4 0.00016 36.7 10.9 114 470-587 4-142 (192)
255 smart00638 LPD_N Lipoprotein N 87.5 11 0.00024 42.6 14.5 137 418-573 393-543 (574)
256 PF06685 DUF1186: Protein of u 87.2 22 0.00049 34.9 14.3 131 459-595 71-203 (249)
257 PF12530 DUF3730: Protein of u 87.2 31 0.00068 33.7 19.1 138 421-575 3-151 (234)
258 PF08167 RIX1: rRNA processing 87.0 7 0.00015 35.9 10.4 111 461-575 25-143 (165)
259 KOG1525 Sister chromatid cohes 87.0 31 0.00067 42.1 17.9 148 461-619 259-406 (1266)
260 PF11865 DUF3385: Domain of un 87.0 6.4 0.00014 36.0 10.0 37 504-540 11-47 (160)
261 smart00638 LPD_N Lipoprotein N 86.8 25 0.00054 39.7 17.0 195 292-523 358-568 (574)
262 PLN03210 Resistant to P. syrin 86.7 0.33 7.1E-06 59.6 1.8 98 77-177 803-909 (1153)
263 KOG2137 Protein kinase [Signal 86.4 7.3 0.00016 43.5 11.5 148 459-620 347-498 (700)
264 KOG2611 Neurochondrin/leucine- 86.4 50 0.0011 35.3 19.2 233 338-575 15-274 (698)
265 KOG1988 Uncharacterized conser 85.9 28 0.00061 39.7 15.6 253 250-533 25-281 (970)
266 KOG1993 Nuclear transport rece 85.3 74 0.0016 36.3 22.9 321 250-583 527-872 (978)
267 PF08167 RIX1: rRNA processing 85.1 6.3 0.00014 36.2 9.0 114 250-367 26-147 (165)
268 PF06371 Drf_GBD: Diaphanous G 84.8 6.1 0.00013 37.1 9.2 82 449-532 95-186 (187)
269 KOG1993 Nuclear transport rece 84.6 80 0.0017 36.0 23.6 321 288-623 485-817 (978)
270 PF08324 PUL: PUL domain; Int 84.5 7.7 0.00017 38.9 10.3 146 307-455 78-238 (268)
271 PF01347 Vitellogenin_N: Lipop 84.4 14 0.0003 42.2 13.6 169 335-530 396-586 (618)
272 KOG2005 26S proteasome regulat 84.1 42 0.00091 37.3 15.5 286 250-580 416-709 (878)
273 PF12031 DUF3518: Domain of un 83.4 2.4 5.2E-05 40.8 5.4 84 263-347 138-229 (257)
274 COG5209 RCD1 Uncharacterized p 82.9 8.4 0.00018 36.5 8.6 107 261-367 111-222 (315)
275 PF06685 DUF1186: Protein of u 82.8 51 0.0011 32.5 14.8 89 333-433 72-169 (249)
276 PF04388 Hamartin: Hamartin pr 82.3 22 0.00049 40.7 13.7 157 250-427 5-161 (668)
277 KOG1822 Uncharacterized conser 81.8 1.6E+02 0.0034 37.4 23.6 232 292-532 877-1126(2067)
278 KOG1992 Nuclear export recepto 81.7 1.1E+02 0.0023 35.3 20.4 308 285-599 355-705 (960)
279 KOG1848 Uncharacterized conser 81.4 58 0.0013 39.5 16.4 135 307-446 811-957 (1610)
280 cd03568 VHS_STAM VHS domain fa 81.2 6.4 0.00014 35.2 7.2 70 590-671 38-108 (144)
281 PF12231 Rif1_N: Rap1-interact 80.8 81 0.0018 33.4 21.6 223 390-622 59-307 (372)
282 COG5209 RCD1 Uncharacterized p 80.2 8.5 0.00018 36.5 7.7 131 527-667 122-262 (315)
283 PF12830 Nipped-B_C: Sister ch 80.0 32 0.00069 32.4 11.9 77 416-498 6-82 (187)
284 KOG4464 Signaling protein RIC- 79.5 86 0.0019 32.9 17.0 157 251-408 47-233 (532)
285 cd03569 VHS_Hrs_Vps27p VHS dom 79.0 8.9 0.00019 34.2 7.4 70 590-671 42-112 (142)
286 KOG0413 Uncharacterized conser 78.9 82 0.0018 36.8 15.9 129 348-490 945-1073(1529)
287 cd03569 VHS_Hrs_Vps27p VHS dom 78.7 7.5 0.00016 34.7 6.8 73 249-321 41-114 (142)
288 PF14225 MOR2-PAG1_C: Cell mor 78.1 77 0.0017 31.6 17.1 169 348-533 76-254 (262)
289 PF10521 DUF2454: Protein of u 77.9 24 0.00052 35.7 11.0 138 292-430 120-277 (282)
290 cd03568 VHS_STAM VHS domain fa 77.8 17 0.00037 32.5 8.8 73 547-619 38-111 (144)
291 cd03567 VHS_GGA VHS domain fam 77.4 16 0.00036 32.4 8.5 73 547-619 39-117 (139)
292 PF14726 RTTN_N: Rotatin, an a 77.3 16 0.00034 30.2 7.7 70 587-670 28-97 (98)
293 PF12031 DUF3518: Domain of un 77.1 3.3 7.1E-05 39.9 4.2 79 307-386 139-226 (257)
294 PLN03210 Resistant to P. syrin 76.8 0.73 1.6E-05 56.6 -0.3 40 137-179 683-722 (1153)
295 PF12074 DUF3554: Domain of un 76.1 56 0.0012 34.0 13.7 218 288-514 19-255 (339)
296 cd03572 ENTH_epsin_related ENT 75.5 42 0.0009 29.0 10.1 74 590-675 39-121 (122)
297 cd03561 VHS VHS domain family; 75.4 17 0.00036 32.0 8.1 70 590-671 38-110 (133)
298 PF12463 DUF3689: Protein of u 75.2 38 0.00082 34.4 11.3 80 544-623 93-178 (303)
299 KOG0301 Phospholipase A2-activ 74.5 1.5E+02 0.0031 33.3 15.9 160 306-471 558-726 (745)
300 PF08324 PUL: PUL domain; Int 74.1 26 0.00056 35.1 10.2 155 419-576 64-232 (268)
301 KOG2038 CAATT-binding transcri 74.0 1.7E+02 0.0036 33.5 20.5 104 293-407 306-410 (988)
302 PF10521 DUF2454: Protein of u 73.8 34 0.00075 34.5 11.0 74 547-620 120-205 (282)
303 KOG0392 SNF2 family DNA-depend 73.6 18 0.00039 43.1 9.5 236 249-493 77-328 (1549)
304 smart00288 VHS Domain present 73.4 15 0.00032 32.4 7.2 71 590-672 38-110 (133)
305 smart00288 VHS Domain present 73.3 13 0.00027 32.8 6.7 73 249-321 37-111 (133)
306 cd03567 VHS_GGA VHS domain fam 73.3 20 0.00043 31.8 7.9 70 590-671 39-114 (139)
307 KOG1848 Uncharacterized conser 73.2 1.1E+02 0.0024 37.2 15.7 62 602-671 1069-1130(1610)
308 PF10274 ParcG: Parkin co-regu 72.8 36 0.00078 31.7 9.7 74 250-324 39-112 (183)
309 PF14726 RTTN_N: Rotatin, an a 72.5 33 0.00071 28.3 8.4 93 264-358 2-95 (98)
310 smart00367 LRR_CC Leucine-rich 71.7 2.2 4.8E-05 25.4 1.1 16 160-175 1-16 (26)
311 PF12054 DUF3535: Domain of un 71.7 63 0.0014 35.0 12.9 302 348-664 101-434 (441)
312 KOG1788 Uncharacterized conser 71.1 1.6E+02 0.0035 34.9 15.7 254 270-533 663-982 (2799)
313 PF10274 ParcG: Parkin co-regu 71.0 89 0.0019 29.1 11.8 71 503-575 38-109 (183)
314 PF13001 Ecm29: Proteasome sta 70.8 72 0.0016 35.3 13.4 217 388-620 248-490 (501)
315 cd03561 VHS VHS domain family; 70.6 24 0.00053 31.0 7.9 73 249-321 37-112 (133)
316 PF00790 VHS: VHS domain; Int 70.5 16 0.00034 32.5 6.8 70 590-671 43-116 (140)
317 PF12726 SEN1_N: SEN1 N termin 68.9 72 0.0016 37.2 13.6 145 250-408 442-587 (727)
318 cd00197 VHS_ENTH_ANTH VHS, ENT 68.4 25 0.00054 29.9 7.4 71 590-672 38-114 (115)
319 PF13504 LRR_7: Leucine rich r 67.2 3.4 7.4E-05 21.9 1.1 16 161-177 1-16 (17)
320 KOG0891 DNA-dependent protein 67.1 32 0.0007 44.7 10.6 199 330-534 561-764 (2341)
321 KOG0301 Phospholipase A2-activ 66.0 2.1E+02 0.0046 32.1 15.0 162 429-599 555-726 (745)
322 cd03572 ENTH_epsin_related ENT 64.8 93 0.002 26.9 10.3 73 547-619 39-120 (122)
323 smart00509 TFS2N Domain in the 63.0 31 0.00068 26.9 6.2 52 606-671 18-69 (75)
324 PF04821 TIMELESS: Timeless pr 61.8 88 0.0019 31.3 10.9 76 601-676 132-211 (266)
325 PF09758 FPL: Uncharacterised 61.3 70 0.0015 28.7 8.8 124 323-446 15-148 (149)
326 KOG1525 Sister chromatid cohes 61.0 4.1E+02 0.0088 33.0 21.0 75 545-621 258-332 (1266)
327 cd08050 TAF6 TATA Binding Prot 60.5 63 0.0014 33.7 9.9 104 250-364 179-298 (343)
328 PF00790 VHS: VHS domain; Int 60.1 67 0.0014 28.5 8.8 74 547-620 43-120 (140)
329 PF08767 CRM1_C: CRM1 C termin 59.9 2.1E+02 0.0047 29.4 15.3 179 477-672 43-243 (319)
330 PF11791 Aconitase_B_N: Aconit 59.5 44 0.00095 29.8 7.1 99 421-533 25-123 (154)
331 KOG1410 Nuclear transport rece 59.0 3.1E+02 0.0067 31.0 18.0 293 250-555 39-354 (1082)
332 PF08389 Xpo1: Exportin 1-like 58.5 96 0.0021 27.3 9.8 142 306-485 2-148 (148)
333 KOG3864 Uncharacterized conser 57.5 3.7 8E-05 38.5 0.2 57 137-193 127-184 (221)
334 PF08711 Med26: TFIIS helical 57.5 26 0.00057 25.0 4.6 35 637-671 13-48 (53)
335 PF13001 Ecm29: Proteasome sta 57.2 1.2E+02 0.0027 33.4 12.1 173 345-533 248-443 (501)
336 KOG0891 DNA-dependent protein 57.1 1E+02 0.0022 40.5 12.3 228 341-577 488-721 (2341)
337 PF04499 SAPS: SIT4 phosphatas 56.8 99 0.0021 33.9 10.9 86 537-622 53-152 (475)
338 PF11229 DUF3028: Protein of u 56.7 3E+02 0.0064 30.1 14.1 274 251-534 44-354 (589)
339 KOG1832 HIV-1 Vpr-binding prot 56.5 78 0.0017 36.5 9.9 167 282-460 592-784 (1516)
340 KOG2073 SAP family cell cycle 55.9 3.6E+02 0.0079 31.7 15.5 177 417-601 189-377 (838)
341 PF04821 TIMELESS: Timeless pr 55.7 1.5E+02 0.0031 29.7 11.2 62 559-620 133-210 (266)
342 PF04869 Uso1_p115_head: Uso1 54.2 1.4E+02 0.003 30.6 11.0 155 305-490 51-231 (312)
343 KOG1788 Uncharacterized conser 53.9 89 0.0019 36.8 9.9 287 247-555 464-783 (2799)
344 KOG2149 Uncharacterized conser 52.7 1.6E+02 0.0035 30.9 10.9 131 463-598 60-191 (393)
345 cd00183 TFIIS_I N-terminal dom 52.4 60 0.0013 25.3 6.3 35 637-671 37-71 (76)
346 PF03378 CAS_CSE1: CAS/CSE pro 52.0 2.2E+02 0.0047 30.9 12.5 265 346-620 42-326 (435)
347 KOG4524 Uncharacterized conser 51.5 89 0.0019 36.5 9.6 94 249-344 803-899 (1014)
348 KOG4194 Membrane glycoprotein 50.5 9.6 0.00021 41.6 1.9 104 8-116 168-274 (873)
349 PF09324 DUF1981: Domain of un 50.3 34 0.00074 27.5 4.7 71 373-443 14-84 (86)
350 KOG1992 Nuclear export recepto 50.0 4.7E+02 0.01 30.4 24.8 315 253-577 41-437 (960)
351 KOG2149 Uncharacterized conser 49.8 1.5E+02 0.0032 31.1 10.2 115 504-621 59-173 (393)
352 KOG0392 SNF2 family DNA-depend 48.8 2.1E+02 0.0045 34.8 12.1 175 391-577 143-327 (1549)
353 PF08216 CTNNBL: Catenin-beta- 46.7 20 0.00044 30.0 2.9 42 310-352 64-105 (108)
354 PF04388 Hamartin: Hamartin pr 46.7 3.7E+02 0.008 31.0 13.9 61 474-534 81-141 (668)
355 KOG4524 Uncharacterized conser 46.1 53 0.0012 38.2 6.9 98 415-514 800-900 (1014)
356 PF08216 CTNNBL: Catenin-beta- 45.9 23 0.0005 29.6 3.1 42 565-608 65-106 (108)
357 PLN03205 ATR interacting prote 45.7 3.8E+02 0.0083 28.1 12.9 159 417-578 322-519 (652)
358 cd08050 TAF6 TATA Binding Prot 45.1 1.6E+02 0.0036 30.6 10.1 113 416-531 208-338 (343)
359 COG5101 CRM1 Importin beta-rel 42.9 5.3E+02 0.012 29.0 15.3 108 336-446 483-598 (1053)
360 PF08713 DNA_alkylation: DNA a 42.8 3E+02 0.0065 26.1 11.8 141 294-460 54-196 (213)
361 PF01417 ENTH: ENTH domain; I 42.2 77 0.0017 27.4 6.1 95 561-674 18-122 (125)
362 KOG4194 Membrane glycoprotein 42.1 20 0.00044 39.3 2.8 56 137-195 394-449 (873)
363 KOG2073 SAP family cell cycle 41.2 3.6E+02 0.0078 31.7 12.6 65 536-600 180-250 (838)
364 PF04869 Uso1_p115_head: Uso1 40.9 4.2E+02 0.0091 27.2 17.2 176 474-656 51-268 (312)
365 PF03130 HEAT_PBS: PBS lyase H 40.9 14 0.00031 22.2 0.9 14 520-533 1-14 (27)
366 cd03565 VHS_Tom1 VHS domain fa 40.8 1.6E+02 0.0035 26.2 8.0 70 590-671 39-113 (141)
367 COG5101 CRM1 Importin beta-rel 40.2 5.9E+02 0.013 28.7 14.6 58 260-321 204-261 (1053)
368 KOG2549 Transcription initiati 40.0 3.9E+02 0.0086 29.4 11.8 107 250-367 208-331 (576)
369 KOG1087 Cytosolic sorting prot 39.8 91 0.002 33.8 7.2 70 590-671 39-110 (470)
370 smart00567 EZ_HEAT E-Z type HE 39.8 35 0.00076 20.8 2.6 14 519-532 2-15 (30)
371 KOG2199 Signal transducing ada 39.6 68 0.0015 33.3 5.9 72 590-673 46-118 (462)
372 KOG2213 Apoptosis inhibitor 5/ 39.6 4.8E+02 0.01 27.5 20.2 129 348-489 38-179 (460)
373 KOG0803 Predicted E3 ubiquitin 38.3 9E+02 0.019 30.3 17.6 252 250-513 42-330 (1312)
374 PF08064 UME: UME (NUC010) dom 38.2 1.8E+02 0.0038 24.4 7.4 80 503-587 11-95 (107)
375 KOG1410 Nuclear transport rece 37.9 6.6E+02 0.014 28.6 27.9 296 249-575 5-334 (1082)
376 PF14666 RICTOR_M: Rapamycin-i 37.5 3.9E+02 0.0086 25.9 12.2 130 432-575 78-225 (226)
377 smart00802 UME Domain in UVSB 36.8 1.7E+02 0.0037 24.6 7.0 80 503-587 11-95 (107)
378 KOG2038 CAATT-binding transcri 36.7 7.2E+02 0.016 28.7 17.5 93 260-363 315-409 (988)
379 PF03378 CAS_CSE1: CAS/CSE pro 35.9 6E+02 0.013 27.5 15.1 111 462-575 203-324 (435)
380 PF08713 DNA_alkylation: DNA a 35.8 73 0.0016 30.4 5.5 78 460-545 119-196 (213)
381 PF12783 Sec7_N: Guanine nucle 35.6 1.4E+02 0.0031 27.3 7.1 81 283-367 65-150 (168)
382 cd00197 VHS_ENTH_ANTH VHS, ENT 35.5 1.7E+02 0.0036 24.8 7.1 70 547-616 38-113 (115)
383 PF04499 SAPS: SIT4 phosphatas 34.5 1.4E+02 0.0031 32.6 7.9 66 250-321 22-92 (475)
384 PF13855 LRR_8: Leucine rich r 34.3 32 0.0007 25.2 2.1 53 138-193 4-57 (61)
385 KOG2199 Signal transducing ada 33.8 2E+02 0.0044 30.0 8.1 72 547-618 46-118 (462)
386 PF14580 LRR_9: Leucine-rich r 33.6 21 0.00046 33.1 1.3 102 58-177 41-145 (175)
387 cd03565 VHS_Tom1 VHS domain fa 32.4 3.6E+02 0.0078 23.9 11.6 72 548-619 40-116 (141)
388 PF01365 RYDR_ITPR: RIH domain 31.8 2E+02 0.0042 27.4 7.7 118 498-621 38-172 (207)
389 PF11791 Aconitase_B_N: Aconit 31.3 1.3E+02 0.0028 27.0 5.5 46 562-619 79-124 (154)
390 KOG4464 Signaling protein RIC- 30.5 6.9E+02 0.015 26.6 21.0 154 380-534 49-232 (532)
391 KOG2005 26S proteasome regulat 30.4 8.6E+02 0.019 27.7 16.8 246 290-548 47-315 (878)
392 PF12054 DUF3535: Domain of un 30.3 4.8E+02 0.01 28.3 11.0 78 263-345 101-179 (441)
393 PF06012 DUF908: Domain of Unk 30.1 1.4E+02 0.0031 30.9 6.8 65 307-372 237-306 (329)
394 PF07923 N1221: N1221-like pro 29.6 2.4E+02 0.0051 28.7 8.2 79 545-623 59-170 (293)
395 PF06012 DUF908: Domain of Unk 28.7 2.8E+02 0.006 28.8 8.6 75 434-510 238-323 (329)
396 PF00560 LRR_1: Leucine Rich R 28.5 31 0.00068 19.4 0.9 18 162-180 1-18 (22)
397 KOG2676 Uncharacterized conser 27.7 62 0.0013 33.2 3.3 62 312-373 376-439 (478)
398 PRK15386 type III secretion pr 27.2 94 0.002 33.2 4.8 84 54-180 47-133 (426)
399 PRK09169 hypothetical protein; 27.2 1.6E+03 0.035 29.9 28.5 16 431-446 329-344 (2316)
400 PF12074 DUF3554: Domain of un 26.9 7.2E+02 0.016 25.7 18.8 194 376-577 22-237 (339)
401 PF07539 DRIM: Down-regulated 26.9 4.5E+02 0.0098 23.3 10.1 82 334-428 17-98 (141)
402 PF14663 RasGEF_N_2: Rapamycin 26.9 2.2E+02 0.0047 24.3 6.2 53 250-303 9-70 (115)
403 PF12463 DUF3689: Protein of u 26.8 7E+02 0.015 25.5 14.4 124 285-408 3-175 (303)
404 PF09324 DUF1981: Domain of un 26.3 2E+02 0.0044 23.0 5.6 64 502-570 16-83 (86)
405 KOG0803 Predicted E3 ubiquitin 26.3 1.4E+03 0.03 28.8 16.9 212 409-623 32-268 (1312)
406 PF13925 Katanin_con80: con80 25.8 3.5E+02 0.0076 24.7 7.8 71 375-446 27-97 (164)
407 PF06743 FAST_1: FAST kinase-l 25.4 2.8E+02 0.006 21.2 6.0 67 396-464 3-69 (71)
408 KOG2229 Protein required for a 24.4 5.9E+02 0.013 27.8 9.8 172 485-684 3-178 (616)
409 KOG4231 Intracellular membrane 23.6 88 0.0019 33.7 3.7 68 506-574 331-398 (763)
410 PF11229 DUF3028: Protein of u 23.5 1E+03 0.022 26.2 20.8 233 334-575 97-353 (589)
411 PF04510 DUF577: Family of unk 23.3 6E+02 0.013 23.5 12.0 150 464-619 6-165 (174)
412 PF14666 RICTOR_M: Rapamycin-i 23.3 7E+02 0.015 24.2 12.5 81 439-532 144-224 (226)
413 cd06561 AlkD_like A new struct 23.0 2.7E+02 0.0058 26.0 6.8 75 464-545 108-182 (197)
414 PF12783 Sec7_N: Guanine nucle 22.7 5.8E+02 0.013 23.1 11.4 82 498-583 68-152 (168)
415 PF12397 U3snoRNP10: U3 small 22.3 4.9E+02 0.011 22.1 10.7 70 416-492 4-76 (121)
416 smart00802 UME Domain in UVSB 21.3 5E+02 0.011 21.8 7.9 80 461-545 11-96 (107)
417 COG5110 RPN1 26S proteasome re 21.0 1.2E+03 0.025 26.0 17.4 87 479-578 622-708 (881)
418 KOG1087 Cytosolic sorting prot 20.2 5.1E+02 0.011 28.3 8.7 73 547-619 39-113 (470)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.3e-79 Score=579.39 Aligned_cols=475 Identities=52% Similarity=0.773 Sum_probs=432.6
Q ss_pred hhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCCCCCCCCCCCCCccchhh-hccHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 035507 199 HSAWKDDLNTTIQQVNLKRE-SFIKKRREGLQSQSYLPSALAPSINLHTK-LEILPMMVAGVWSDDNNLQLEATTQFQKL 276 (684)
Q Consensus 199 ~~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~lv~~L~s~~~~~~~~a~~~L~~l 276 (684)
++..+.|.+.+|++||+||+ .++||||....++..+.+..+ ..++ -.-+|.+.+.|.|+|.+.|..|+..+|++
T Consensus 23 delRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~----meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~ 98 (526)
T COG5064 23 DELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIP----MEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKL 98 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCc----hhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44567788899999999999 999999984322221111111 1111 12579999999999999999999999999
Q ss_pred hcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHH
Q 035507 277 LSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAV 355 (684)
Q Consensus 277 ~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~ 355 (684)
+|.+. |+++.++++|++|++++++........+++|+|+|+|+++++..++..+++.|++|.++++|.+++.+|+++++
T Consensus 99 LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQav 178 (526)
T COG5064 99 LSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAV 178 (526)
T ss_pred hccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHH
Confidence 99887 99999999999999999995544368999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC-chHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcCCcHH
Q 035507 356 WALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT-ELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQ 433 (684)
Q Consensus 356 ~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~-~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~ 433 (684)
|+|||+|++++.+|+.++..|++.+++.++..+. +..+.+++.|+|+|||++. |.+....+...+|.|.+++.+.|++
T Consensus 179 WALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~e 258 (526)
T COG5064 179 WALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPE 258 (526)
T ss_pred HHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHH
Confidence 9999999999999999999999999999996543 4689999999999999999 8888889999999999999999999
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc
Q 035507 434 VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI 513 (684)
Q Consensus 434 v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~ 513 (684)
+..+|||+++|++ +++.+.++.+++.|+.++|+++|.+++..++.+|++.+||++++++.+++.++++|+++.+..+|.
T Consensus 259 vlvDA~WAiSYls-Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs 337 (526)
T COG5064 259 VLVDACWAISYLS-DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS 337 (526)
T ss_pred HHHHHHHHHHHhc-cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC--CHHHHHHHHHCCCh
Q 035507 514 HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG--THDQIKYLVTEGCI 591 (684)
Q Consensus 514 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~g~l 591 (684)
++ ...+|++|||+++||++|+.++++++++++++|+|+++|+..+..++++||||+.|.++++ .|+..++|++.|++
T Consensus 338 ~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~I 416 (526)
T COG5064 338 SP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFI 416 (526)
T ss_pred Ch-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccch
Confidence 99 8899999999999999999999999999999999999999999999999999999999976 58899999999999
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507 592 KPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY 671 (684)
Q Consensus 592 ~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~ 671 (684)
++|+++|...+.++.+.+++++.++++.++....... ...|.|+.++++.||++.|..+|.+.|.+||.+|+.||++|
T Consensus 417 kpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~f 494 (526)
T COG5064 417 KPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKF 494 (526)
T ss_pred hHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987653321 34678999999999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 035507 672 WCGRVVGPQL 681 (684)
Q Consensus 672 f~~e~~~~~~ 681 (684)
|++||.-+.+
T Consensus 495 FgeeD~vd~l 504 (526)
T COG5064 495 FGEEDAVDEL 504 (526)
T ss_pred cccchhhhhc
Confidence 9888754434
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-76 Score=607.48 Aligned_cols=479 Identities=60% Similarity=0.882 Sum_probs=437.2
Q ss_pred hhhhcccccchhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCCCCCCCCCCCCCccchhhhccHHHHHHHhcCCCHHHHH
Q 035507 189 KVQLKTWDKEHSAWKDDLNTTIQQVNLKRE-SFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQL 267 (684)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~ 267 (684)
+.+.+. .+.++..++|.+..||+||+||+ .+.|||+..++... +.. ...........+.++..+.|+++..+.
T Consensus 11 ~~k~~~-~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~S~~~~~q~ 84 (514)
T KOG0166|consen 11 RYKNKG-VDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELML--DEL---LSDSQSQASNLELMLAALYSDDPQQQL 84 (514)
T ss_pred HHhhcc-ccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhccc--ccc---cchhHHHhhhhHHHHHHHhCCCHHHHH
Confidence 344443 33444567788899999999999 99999992221111 110 111122223478899999999999999
Q ss_pred HHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCC
Q 035507 268 EATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP 346 (684)
Q Consensus 268 ~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~ 346 (684)
.|+..+|++++... |+++.++..|++|.+|++|...+++.+|.+|+|+|+|||+++++++..++++|++|.|+.++.++
T Consensus 85 ~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~ 164 (514)
T KOG0166|consen 85 TATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP 164 (514)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC
Confidence 99999999999877 99999999999999999998776699999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHH
Q 035507 347 SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQ 425 (684)
Q Consensus 347 ~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~ 425 (684)
+..++++|+|+|+|++++++.+|+.+++.|++.+|+.++..+....+.++++|+|+|||+++ |.+.+..+..++|+|..
T Consensus 165 ~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ 244 (514)
T KOG0166|consen 165 SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLR 244 (514)
T ss_pred cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976666789999999999999999 88999999999999999
Q ss_pred HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCCh
Q 035507 426 LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAV 505 (684)
Q Consensus 426 lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l 505 (684)
++++.|++++.+|||+++|++ +++++.++.+++.|++|.|+.+|.+.+..++.+|++++||+++|++.+++.++++|++
T Consensus 245 ll~~~D~~Vl~Da~WAlsyLs-dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L 323 (514)
T KOG0166|consen 245 LLHSTDEEVLTDACWALSYLT-DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGAL 323 (514)
T ss_pred HHhcCCHHHHHHHHHHHHHHh-cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHH
Q 035507 506 PCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYL 585 (684)
Q Consensus 506 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 585 (684)
|.|..++...+...++++|||+++||++|+++++++++++|++|.|+++|+.+++++|++|+||++|++.+|++++..||
T Consensus 324 ~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yL 403 (514)
T KOG0166|consen 324 PVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYL 403 (514)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 99999998553777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 035507 586 VTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665 (684)
Q Consensus 586 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~ 665 (684)
++.|++++|+++|...|++++.++++++++|++.++..... +. ++++.+++++||+++|+.||+|+|.+||++|+
T Consensus 404 v~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~----~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~ 478 (514)
T KOG0166|consen 404 VEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNR----GT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAY 478 (514)
T ss_pred HHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccc----cc-cHHHHHHHHccChhHHHHhhccccHHHHHHHH
Confidence 99999999999999999999999999999999999987642 12 88999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCC
Q 035507 666 KILETYWCGRVVGP 679 (684)
Q Consensus 666 ~ii~~~f~~e~~~~ 679 (684)
+||++||.+|+.++
T Consensus 479 ~II~~yf~~e~~~~ 492 (514)
T KOG0166|consen 479 KIIDTYFSEEDDED 492 (514)
T ss_pred HHHHHhcCCCcccc
Confidence 99999999886544
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-44 Score=370.84 Aligned_cols=372 Identities=26% Similarity=0.385 Sum_probs=335.5
Q ss_pred hhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507 247 KLEILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 247 ~~~~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
..|.+|.+|..+.. .++.+|++|+|+|.+++++.......++++|++|.|+.++.+++ ..++++|+|+|+|++.+++.
T Consensus 107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChH
Confidence 44899999999985 55999999999999999999888999999999999999999999 89999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhcCCCCh-HHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507 326 NTKVVIEHDAVPIFVKLLASPSD-DVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404 (684)
Q Consensus 326 ~~~~i~~~g~i~~Li~lL~~~~~-~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL 404 (684)
+|+.+++.|+++.|+.++..++. ...+++.|+|.|+|.........-.-..+++.|..++ .+.|.+++..|+|++++|
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence 99999999999999999988665 7888999999999977632223333345677777777 899999999999999999
Q ss_pred ccCCCC-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC-CCCcccHhHHH
Q 035507 405 CRGKPR-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG-HPSPSVLTPAL 482 (684)
Q Consensus 405 ~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al 482 (684)
+.+.+. .......|++|.|+++|.+.++.++..|+++++|++ .+++.+++.+++.|++|.|..++. ++...++..||
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv-tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAc 343 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV-TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEAC 343 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee-eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHH
Confidence 998743 444455999999999999999999999999999999 999999999999999999999998 66777999999
Q ss_pred HHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507 483 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFD 561 (684)
Q Consensus 483 ~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~ 561 (684)
|+|+|++.|+..+.++++++|++|.|+.+|+.. +.++|++|+|+++|++. ++++++.++++.|++++++.+|...|.+
T Consensus 344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ 422 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVK 422 (514)
T ss_pred HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChH
Confidence 999999999999999999999999999999999 99999999999999987 7899999999999999999999888999
Q ss_pred HHHHHHHHHHHhhcCCC-------HHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 562 IKEEAAWAISNASSRGT-------HDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 562 v~~~a~~aL~nl~~~~~-------~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
+...+..++.|+...+. .....++.+.|+++.+..+..+.+.++...|..++.+++..++.
T Consensus 423 ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~ 490 (514)
T KOG0166|consen 423 IILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDD 490 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999987542 33455677899999999999999999999999999999987643
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-44 Score=344.25 Aligned_cols=399 Identities=24% Similarity=0.315 Sum_probs=342.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccchhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCC
Q 035507 204 DDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVW-SDDNNLQLEATTQFQKLLSIESM 282 (684)
Q Consensus 204 ~~~~~~~~~r~~~r~~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~-s~~~~~~~~a~~~L~~l~s~~~~ 282 (684)
+|++..++....-|..++|.-++| .+...+.|.+|++++++. ......+++|+|+|.+++|+...
T Consensus 83 dDie~q~qav~kFR~~LS~E~~PP--------------Iq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~ 148 (526)
T COG5064 83 DDIEQQLQAVYKFRKLLSKETSPP--------------IQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQ 148 (526)
T ss_pred hHHHHHHHHHHHHHHHhccccCCC--------------chhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCccc
Confidence 455555554444444566554433 233445689999999994 55667899999999999999988
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCC--ChHHHHHHHHHHHH
Q 035507 283 PIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP--SDDVREQAVWALGN 360 (684)
Q Consensus 283 ~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~a~~~L~n 360 (684)
..+.++++|++|.++++|.+++ .+++++|+|+|+|++.+++.+|+.+.+.|++.+++.++.+. +..+.+++.|.|+|
T Consensus 149 QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 149 QTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred ceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 8888999999999999999998 89999999999999999999999999999999999998874 45788999999999
Q ss_pred hhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCC-CChhhhhchHHHHHHHhcCCcHHHHHHHH
Q 035507 361 VAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR-PLFDQVRPALPALAQLIHSNDEQVLTDAC 439 (684)
Q Consensus 361 La~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al 439 (684)
+|+......+.-.-..+++.|..++ ...|+++...|+|++++|+.+... .......++.+.|+.+|.+++..++..|+
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPal 306 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPAL 306 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHH
Confidence 9965422222222233566666666 888999999999999999999733 33334478888999999999999999999
Q ss_pred HHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChh
Q 035507 440 WALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS 519 (684)
Q Consensus 440 ~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~ 519 (684)
+.++|+. .+++.+.+.+++.|+++.+-.+|.++...+++.|||+++|++.++.++.+++++.+++|.|+.+|.+. +..
T Consensus 307 R~vGNIV-TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k 384 (526)
T COG5064 307 RSVGNIV-TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYK 384 (526)
T ss_pred HhhcCee-ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhc---CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCH----------HHHHHHH
Q 035507 520 IKKEVSWIISNIAC---GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTH----------DQIKYLV 586 (684)
Q Consensus 520 v~~~a~~~L~nl~~---~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~----------~~~~~l~ 586 (684)
++++|||+++|.+. +.|+++.++++.|++.+|..+|.-.+.++-+.++.++.|+...|.. .+..++.
T Consensus 385 ~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE 464 (526)
T COG5064 385 IKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVE 464 (526)
T ss_pred HHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHH
Confidence 99999999999987 3689999999999999999999999999999999999999987643 3445556
Q ss_pred HCCChHHHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507 587 TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 587 ~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~ 620 (684)
+.|+++.+..+.++.+.++...+..++..++..+
T Consensus 465 ~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee 498 (526)
T COG5064 465 KAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE 498 (526)
T ss_pred hcccHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence 6999999999999999999999999999988543
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=6.3e-39 Score=376.70 Aligned_cols=406 Identities=22% Similarity=0.260 Sum_probs=347.9
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 035507 247 KLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSEN 326 (684)
Q Consensus 247 ~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 326 (684)
+.|.+|.++.+|.++++..|..|++++.+++....+++..+++.|++|.|+++|++++++.+|++|+|+|++|+++++++
T Consensus 187 eaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 45899999999999999999999999988887766789999999999999999987654799999999999999999999
Q ss_pred HHHHHhcCChHHHHHhcCCCC---------hHHHHHHHHHHHHhhCCCCC-----------CchhH---hhcCCHHHHHH
Q 035507 327 TKVVIEHDAVPIFVKLLASPS---------DDVREQAVWALGNVAADSSG-----------CRDLV---LSEGALIPLLA 383 (684)
Q Consensus 327 ~~~i~~~g~i~~Li~lL~~~~---------~~v~~~a~~~L~nLa~~~~~-----------~r~~i---~~~g~l~~Ll~ 383 (684)
+..+++.|++|.|+.++.+++ ..++++|+|+|+|||++.+. .|+.. ...|++.+++.
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 999999999999999998654 34699999999999987533 33322 34577888877
Q ss_pred HhccCCchHHH----HHHHHHHHHhccCC-CCCChhh-------------------hhchHHHHHHHhcCCcHHHHHHHH
Q 035507 384 QLNEHTELSML----RIATTTLSNLCRGK-PRPLFDQ-------------------VRPALPALAQLIHSNDEQVLTDAC 439 (684)
Q Consensus 384 ~L~~~~~~~v~----~~a~~~L~nL~~~~-~~~~~~~-------------------~~~~l~~L~~lL~~~d~~v~~~al 439 (684)
.+. .++...+ ..++|+|.+|+++. +...... ..++++.|+.++...+.+++.+++
T Consensus 347 l~d-~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av 425 (2102)
T PLN03200 347 VFD-SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI 425 (2102)
T ss_pred hcC-CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence 774 3333333 36789999999987 3331211 145677888899999999999999
Q ss_pred HHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChh
Q 035507 440 WALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS 519 (684)
Q Consensus 440 ~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~ 519 (684)
|+|++++ +++++..+.+.+.|++|.|+++|.+++..++..|+++++|++.+++++++.++++|++|.|+++|.++ +..
T Consensus 426 ~aL~~L~-~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~ 503 (2102)
T PLN03200 426 RALSSLC-CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQK 503 (2102)
T ss_pred HHHHHHh-CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHH
Confidence 9999999 99999999999999999999999999999999999999999999998999999999999999999998 999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHH-HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 035507 520 IKKEVSWIISNIACGNREQIQAVI-DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL 598 (684)
Q Consensus 520 v~~~a~~~L~nl~~~~~~~~~~l~-~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL 598 (684)
++++|+|+|+|++.+. ++++.++ +.|++|.|+++|.++++++++.|+|+|.|++..++.+. ++++++++
T Consensus 504 iqeeAawAL~NLa~~~-~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LL 573 (2102)
T PLN03200 504 AKEDSATVLWNLCCHS-EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALL 573 (2102)
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHh
Confidence 9999999999999975 4455555 78999999999999999999999999999998776553 47788899
Q ss_pred cCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 035507 599 QCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGR 675 (684)
Q Consensus 599 ~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e 675 (684)
.++++.++..++.++.+++...+... .........||++.|.+|+.|+++++++.|.++|.+||...
T Consensus 574 lsdd~~~~~~aL~vLgnIlsl~~~~d----------~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 574 LGDLPESKVHVLDVLGHVLSVASLED----------LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cCCChhHHHHHHHHHHHHHhhcchhH----------HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998765432 11223445799999999999999999999999999999754
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=364.97 Aligned_cols=416 Identities=19% Similarity=0.207 Sum_probs=371.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
+.++.++.++.+.+.+.|..++++|+.++..+...++.+++.|++|.|+++|++++ +.+|..|+|+|++++.++++++.
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence 56788999999999999999999999998887788999999999999999999988 89999999999999998999999
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
.+++.|++|.|+++|.+++..+++.|+|+|+|++.++++.+..+...|++++|+.+| .+.+...+..++|+|.+++...
T Consensus 483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~ 561 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTA 561 (2102)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998888888888899999999999 5668899999999999997543
Q ss_pred CCCC-----------------------------------h---hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC
Q 035507 409 PRPL-----------------------------------F---DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN 450 (684)
Q Consensus 409 ~~~~-----------------------------------~---~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~ 450 (684)
.... . ....+++|.|++++.++++.++..|+|+|.+++ .+.
T Consensus 562 d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~-a~~ 640 (2102)
T PLN03200 562 DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF-SSR 640 (2102)
T ss_pred chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCC
Confidence 1110 0 012579999999999999999999999999999 888
Q ss_pred hHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh-hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507 451 NDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS 529 (684)
Q Consensus 451 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 529 (684)
.++.+.++..|+++.++.+|.+.+..++..|+++|+|++.+.. .+...+++.|+++.|+++|.+. +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999996444 4566788999999999999998 9999999999999
Q ss_pred HHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHH-H-HHHHHCCChHHHHhhccCCChHHHH
Q 035507 530 NIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQ-I-KYLVTEGCIKPLCDLLQCADPKIVT 607 (684)
Q Consensus 530 nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~g~l~~L~~lL~~~~~~v~~ 607 (684)
|++... +....+...|+++.|++++.+++++.|+.|+|+|.+++.+++.++ . .++...|.+.+|+++|+..|.+...
T Consensus 720 nLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 720 NLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 999865 566777888999999999999999999999999999999876555 3 6677899999999999999988877
Q ss_pred H--HHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 035507 608 V--CLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGR 675 (684)
Q Consensus 608 ~--al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e 675 (684)
. ++++|..+.+...... ...++++..+|..++++.|.....|.+|.++++|.+||+++..+.
T Consensus 799 ~~~al~~l~~l~~~~~~~~------~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 799 TSEALEALALLARTKGGAN------FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHHHHHHHHHHHhhcccCC------CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 6 9999999998655443 245789999999999999965669999999999999999998764
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.8e-28 Score=233.77 Aligned_cols=362 Identities=20% Similarity=0.221 Sum_probs=315.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
...++...+++.++.+|..|..++.+++-.. ++.-.+++.+++..|+.-+..+. .++|..|+.|++|++.. ++++..
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~-enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk~k 162 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNM-ENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNKVK 162 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceecc-CCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccchhh
Confidence 4456777889999999999999999876543 45555667777777776666666 58999999999999994 788999
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
+...|++.+++.+-++.+..+|.++..+|.|+....+ .|+.+...|+++.|+.++ ...|.+++..++.+++|++-...
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~E-nRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~~ 240 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRE-NRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDRR 240 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhh-hhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhHH
Confidence 9999999999998888999999999999999976554 488889999999999999 88899999999999999987763
Q ss_pred CCChhhh--hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507 410 RPLFDQV--RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487 (684)
Q Consensus 410 ~~~~~~~--~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 487 (684)
.+..... +.++|.|++++.++++.++-.|..+|++++ .+.++...+.++|.+|.++++++++........+.|+.|
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnla--sdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLA--SDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhc--ccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 3333333 459999999999999999999999999999 566777789999999999999999998899999999999
Q ss_pred HHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHH
Q 035507 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAA 567 (684)
Q Consensus 488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~ 567 (684)
++-+.- ..-.++++|++.+|+.+|...++.+++-.|..+|.|+++........+++.|.+|.++.++-++..+++.+..
T Consensus 319 isihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis 397 (550)
T KOG4224|consen 319 ISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS 397 (550)
T ss_pred cccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence 986554 4456789999999999999886777999999999999998888999999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 568 WAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 568 ~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
.++..++. +.....++.+.|+++.|+.++.+.+.+++..+..+|.++....+
T Consensus 398 ac~a~Lal--~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 398 ACIAQLAL--NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred HHHHHHHh--ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 99999987 45667889999999999999999999999999999999886543
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-27 Score=228.34 Aligned_cols=364 Identities=21% Similarity=0.273 Sum_probs=317.7
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 035507 247 KLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSEN 326 (684)
Q Consensus 247 ~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 326 (684)
.+..+..++..+.++..++|..|+.++++++.. ..++..+...|++.++.++-++.+ ..+|..|..+|.|+.. +.++
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~En 200 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SREN 200 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhhh
Confidence 456788888888888899999999999999887 467788899999999999777777 7999999999999997 8899
Q ss_pred HHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcC--CHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507 327 TKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEG--ALIPLLAQLNEHTELSMLRIATTTLSNL 404 (684)
Q Consensus 327 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g--~l~~Ll~~L~~~~~~~v~~~a~~~L~nL 404 (684)
|+.++.+|++|.|+.++.+++..+|+.|..+++||+-+... |+.+.+.+ .++.|++++ .+++..++..|.-+|.|+
T Consensus 201 Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~-Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 201 RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA-RKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNL 278 (550)
T ss_pred hhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH-HHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999977654 77788877 899999999 788889999999999999
Q ss_pred ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-CcccHhHHHH
Q 035507 405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-SPSVLTPALW 483 (684)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~ 483 (684)
+....-.......+.+|.++++++++..........++.|++ -.+-+.-.+++.|++..|+.+|... ++.++..|..
T Consensus 279 asdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnis--ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 279 ASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNIS--IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred cccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcc--cccCcccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 988654555566899999999999998888888999999998 4455566788999999999999875 4559999999
Q ss_pred HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHH
Q 035507 484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIK 563 (684)
Q Consensus 484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~ 563 (684)
+|.|++.........+..+|.+|.+..++.+. ...+|.+...+++.++-.. ....++.+.|++|.|+.+..+.+.+++
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccchhhc
Confidence 99999998888899999999999999999998 8899999999999887653 567789999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHH------CCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 564 EEAAWAISNASSRGTHDQIKYLVT------EGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 564 ~~a~~aL~nl~~~~~~~~~~~l~~------~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
..|+.||.|++. +.++..++++ .|+-..|...+.+.+.-+...+.|++..+++...
T Consensus 435 gNaAaAL~Nlss--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 435 GNAAAALINLSS--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred ccHHHHHHhhhh--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 999999999998 4555555544 4556677788888888889999999998887643
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=4e-22 Score=218.43 Aligned_cols=388 Identities=21% Similarity=0.203 Sum_probs=318.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507 252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI 331 (684)
Q Consensus 252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~ 331 (684)
..+-..+...+ .+...|...|.+++... .....+.+.|+++.|+++|++++ .++...++.+|.+++- ..+++..+.
T Consensus 253 kk~~~l~~kQe-qLlrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~ 328 (708)
T PF05804_consen 253 KKLQTLIRKQE-QLLRVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMA 328 (708)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 34444444433 44456778888977654 56677899999999999999887 8999999999999998 778999999
Q ss_pred hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC
Q 035507 332 EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP 411 (684)
Q Consensus 332 ~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~ 411 (684)
+.|+++.|+.++.+++..++..++++|.|++.+... |..+.+.|.++.|+.+|.+ +..+..++.+|.++|.....+
T Consensus 329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~-R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~r 404 (708)
T PF05804_consen 329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL-RSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEAR 404 (708)
T ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH-HHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhhH
Confidence 999999999999999999999999999999988754 8999999999999999943 345567899999999987666
Q ss_pred ChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHc
Q 035507 412 LFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490 (684)
Q Consensus 412 ~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 490 (684)
......+++|.+++++. .+++.+...+++.+.|++ .+..+.+.+.+.|+++.|+........ ...+.++.|++.
T Consensus 405 ~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa--~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~ 479 (708)
T PF05804_consen 405 SMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA--LNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ 479 (708)
T ss_pred HHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh--cCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence 66666789999998765 456777788889999999 667888889998999999988654332 234579999998
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHH
Q 035507 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAW 568 (684)
Q Consensus 491 ~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~ 568 (684)
+++.....+. +.+..|+.++..+.+.+..-++..+|+|++..+.+..+.+-+.+++|.|.+.|..+ ++++.-+++.
T Consensus 480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 8754333333 47777888887766888999999999999986656666666789999999999876 6789999999
Q ss_pred HHHHhhcCCCHHHHHHHHHCCChHHHHhhccC--CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchH
Q 035507 569 AISNASSRGTHDQIKYLVTEGCIKPLCDLLQC--ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGL 646 (684)
Q Consensus 569 aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~--~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 646 (684)
.+++++. +++.+..+.+.|+++.|+++++. .|.+++..++.++.+++...+.. ...+.+.++.
T Consensus 558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr-------------~~ll~~~~~~ 622 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR-------------EVLLKETEIP 622 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------HHHHhccchH
Confidence 9999987 77888888999999999999985 57899999999999999986543 3667888999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHH
Q 035507 647 EKIENLQSHDNNEIHEKSVKILE 669 (684)
Q Consensus 647 ~~L~~L~~~~~~~i~~~a~~ii~ 669 (684)
..+-+|.++.|++|++.|...++
T Consensus 623 ~ylidL~~d~N~~ir~~~d~~Ld 645 (708)
T PF05804_consen 623 AYLIDLMHDKNAEIRKVCDNALD 645 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999877665554
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.91 E-value=5.1e-22 Score=217.62 Aligned_cols=415 Identities=21% Similarity=0.244 Sum_probs=320.9
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507 246 TKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 246 ~~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
.+-+.++.|++.|.+++.++...++..|.++ |....+...|.+.|+++.|++++.+++ .+++..|+++|.|++. +++
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkL-Si~~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~ 363 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKL-SIFKENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPE 363 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHH
Confidence 3457899999999999999999999999995 444568999999999999999999988 8999999999999999 889
Q ss_pred hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 035507 326 NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLC 405 (684)
Q Consensus 326 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~ 405 (684)
.|..++..|++|.|+.+|.++ ..+..|+.+|.+++.+.. +|.++...++++.++..+..+++..+...+++++.|++
T Consensus 364 ~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence 999999999999999999865 455679999999998764 58888889999999999878888888888999999999
Q ss_pred cCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHH
Q 035507 406 RGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWT 484 (684)
Q Consensus 406 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~ 484 (684)
............++++.|++........+ .+..+.|++ ..+......+. +++..|+.++.. ++++....++.+
T Consensus 441 ~~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS-~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGi 514 (708)
T PF05804_consen 441 LNKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNIS-QHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGI 514 (708)
T ss_pred cCHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHH-hcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHH
Confidence 99755555555688898887655433322 335788888 65533333332 467777788766 467888899999
Q ss_pred HHHHHcCChhhHHHHHhcCChHHHHHHhccCC-ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHh
Q 035507 485 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFD 561 (684)
Q Consensus 485 L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~ 561 (684)
|+|+...+....+.+.+.+++|.+..+|..+. .+++.-+++..++.++. ++.....+.+.|+++.|+.++... |.+
T Consensus 515 LaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE 593 (708)
T PF05804_consen 515 LANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDE 593 (708)
T ss_pred HHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHH
Confidence 99998766556666667899999999997652 55789999999998886 457777788999999999999865 799
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHH
Q 035507 562 IKEEAAWAISNASSRGTHDQIKYLV-TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLV 640 (684)
Q Consensus 562 v~~~a~~aL~nl~~~~~~~~~~~l~-~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i 640 (684)
+.-..++++..+..+ ++.+..++ +.++...|++++++.+++++..|-.+|.-+.+..+..... ...-....
T Consensus 594 ~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~r------i~~~kF~~ 665 (708)
T PF05804_consen 594 IVLQILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAER------IRREKFRW 665 (708)
T ss_pred HHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHH------hhHHHHHH
Confidence 999999999999984 56666765 5889999999999999999999999999999987765321 11111222
Q ss_pred HHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 035507 641 EEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGRVVGPQL 681 (684)
Q Consensus 641 ~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e~~~~~~ 681 (684)
.....++.++.=+...+..-.....+..+.||..+|.-+..
T Consensus 666 hN~~WLe~v~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 706 (708)
T PF05804_consen 666 HNAQWLEMVESQQLDDNDDYLDYGDDIFEEYFLRSDILDRP 706 (708)
T ss_pred HHHHHHHHHhcccccccccccCCCCcccccccchhhhhhCC
Confidence 23445666654333333332222334444555555544433
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.2e-18 Score=181.67 Aligned_cols=389 Identities=20% Similarity=0.279 Sum_probs=310.1
Q ss_pred cHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 250 ILPMMVAGVWSD-DNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 250 ~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
.+..|+..|+.. |+..|++|+..++.+++..+ .....+--..++|.|+.+|++.++.++...|++||++++..-|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 467888888865 99999999999999988765 3333333345899999999999889999999999999999999999
Q ss_pred HHHHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507 328 KVVIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR 406 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~ 406 (684)
..+++.++||.|+.-|. -...++.|+++.+|-.|+++.+. .+++.|++...+..+ +..+..+++.|+.+..|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998554 48899999999999999988764 678999999999998 67788899999999999999
Q ss_pred CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC---ChHHHHHHHHhchHHHHHHhcCCCC----cccHh
Q 035507 407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR---NNDKIQAVIEAGVCGRLVELLGHPS----PSVLT 479 (684)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~---~~~~~~~~~~~g~l~~L~~lL~~~~----~~v~~ 479 (684)
.-+...+..+...+|.|..+|...|....+.+|.++.+++ ++ .++..+.+...|.+....+++.-.. ..+..
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~-d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIA-DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH-HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 9888888889999999999999999999999999999998 54 4567788888899999999986542 34556
Q ss_pred HHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCC---C----------h-hHHHHHH--------------------
Q 035507 480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH---K----------N-SIKKEVS-------------------- 525 (684)
Q Consensus 480 ~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~---~----------~-~v~~~a~-------------------- 525 (684)
..++.+.-++.+++.....+...++...|..+|.... + + ++-.-..
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~ 482 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS 482 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence 6778888888888877777777777777776663210 0 0 0000000
Q ss_pred -------------------------------HHHHHH----------------------hcCChHHHHHHHHhCCHHHHH
Q 035507 526 -------------------------------WIISNI----------------------ACGNREQIQAVIDAGLIGPLV 552 (684)
Q Consensus 526 -------------------------------~~L~nl----------------------~~~~~~~~~~l~~~g~l~~Li 552 (684)
..+..+ ....|+-.+.++. .++|.|+
T Consensus 483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLv 561 (1051)
T KOG0168|consen 483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLV 561 (1051)
T ss_pred hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHH
Confidence 011100 0011233333333 3799999
Q ss_pred HHhccC-CHhHHHHHHHHHHHhhcCCCHHHHHHHHH-CCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCC
Q 035507 553 NLLQNA-EFDIKEEAAWAISNASSRGTHDQIKYLVT-EGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDI 630 (684)
Q Consensus 553 ~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~ 630 (684)
++..+. ++.||..++.||..++...+.+.+..++. ..+-..+-.+|.+.|..++..++....-+++.-..
T Consensus 562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd-------- 633 (1051)
T KOG0168|consen 562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD-------- 633 (1051)
T ss_pred HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH--------
Confidence 999876 99999999999999999888888887764 55667778899999999999999999999986543
Q ss_pred cchhHHHHHHHHhchHHHHHHhhcCC
Q 035507 631 GDINQFAQLVEEAEGLEKIENLQSHD 656 (684)
Q Consensus 631 ~~~~~~~~~i~~~g~~~~L~~L~~~~ 656 (684)
.|...|.+.|++..+..|....
T Consensus 634 ----~F~~~F~REGV~~~v~~L~~~~ 655 (1051)
T KOG0168|consen 634 ----TFSPSFRREGVFHAVKQLSVDS 655 (1051)
T ss_pred ----HhhhhHhhhhHHHHHHHHhccC
Confidence 3889999999999999997633
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.80 E-value=2.6e-18 Score=183.85 Aligned_cols=404 Identities=22% Similarity=0.243 Sum_probs=293.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch--hH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE--NT 327 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~--~~ 327 (684)
.+|+.+.+|.+.++.+|-.|+..+..+..++......+.+.|.|+.||.+|.+.. .++|.+|+++|.|+..++.. ++
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcccc
Confidence 6799999999999999999999998887777777778889999999999999998 89999999999999997666 88
Q ss_pred HHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC-------------CchHH
Q 035507 328 KVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH-------------TELSM 393 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~-------------~~~~v 393 (684)
-.+.+.++|+.++++|.. .|.++++.+..+|+||+..+ .++..+ ...++..|....... .+.++
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~i-i~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLI-ITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHH-HHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 999999999999999987 78999999999999999874 333333 334556665554311 13678
Q ss_pred HHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHhc------CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHH
Q 035507 394 LRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLIH------SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGR 465 (684)
Q Consensus 394 ~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~------~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~ 465 (684)
..+++.+|.|++... ....+....|++..|+..++ +.|....++++..+.|++ ..- +..+....-+.
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLS-Yrl----~~Evp~~~~~~ 465 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLS-YRL----EAEVPPKYRQV 465 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcC-chh----hhhcCHhhhhH
Confidence 899999999999865 33445556889999988876 346778899999999998 321 11111111111
Q ss_pred HHHhcCCCCcccHhHHHHHHHHHHcCC---------------hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507 466 LVELLGHPSPSVLTPALWTVGNIVMGD---------------DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN 530 (684)
Q Consensus 466 L~~lL~~~~~~v~~~al~~L~nl~~~~---------------~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 530 (684)
+...=......-......+.+.-.... +.....+....++.....+|....+..+.+.++.+|-|
T Consensus 466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN 545 (717)
T KOG1048|consen 466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN 545 (717)
T ss_pred hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence 111110000000002222232222210 11112223334566656666544478899999999999
Q ss_pred HhcCChH----HHHHH-HHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC----
Q 035507 531 IACGNRE----QIQAV-IDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA---- 601 (684)
Q Consensus 531 l~~~~~~----~~~~l-~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~---- 601 (684)
++++... ....+ .+..++|.|++++..++..+.+.++.+|.|++.. .... .++..++++.|++.|...
T Consensus 546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rnk-~ligk~a~~~lv~~Lp~~~~~~ 622 (717)
T KOG1048|consen 546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRNK-ELIGKYAIPDLVRCLPGSGPST 622 (717)
T ss_pred hhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chhh-hhhhcchHHHHHHhCcCCCCCc
Confidence 9985322 23333 4667899999999999999999999999999983 3433 345578999999999754
Q ss_pred --ChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCCC
Q 035507 602 --DPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH-DNNEIHEKSVKILETYWCGRVV 677 (684)
Q Consensus 602 --~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~-~~~~i~~~a~~ii~~~f~~e~~ 677 (684)
+.+++..++.+|.+++..... .+..+-+.+|+++|..|..+ .++.+.+.|...+..+|.+.+.
T Consensus 623 ~~sedtv~~vc~tl~niv~~~~~-------------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 623 SLSEDTVRAVCHTLNNIVRKNVL-------------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred CchHHHHHHHHHhHHHHHHHhHH-------------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999965433 45777889999999999544 5678999999999998876553
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.71 E-value=6.3e-14 Score=152.91 Aligned_cols=396 Identities=15% Similarity=0.165 Sum_probs=298.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507 253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE 332 (684)
Q Consensus 253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~ 332 (684)
.+...+++.+.+....++..|.+++....+. . + ..+..+.|...|.+++ +.+|..|++.+.+++.++......+.+
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~-~-l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSALSPD-S-L-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhccCHH-H-H-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 3777888888888888889999988865422 2 2 5677899999999988 999999999999999977777888889
Q ss_pred cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC-
Q 035507 333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP- 411 (684)
Q Consensus 333 ~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~- 411 (684)
.++++.++..+.+++..+...|+.+|.+++...+.. +.+...+.+..|..++ ...+..++..+..++.+++...+..
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999999887664 4566777778888887 4456677888999999998876332
Q ss_pred ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCccc-----H-hHHHHHH
Q 035507 412 LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSV-----L-TPALWTV 485 (684)
Q Consensus 412 ~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v-----~-~~al~~L 485 (684)
......|+++.++..+.++|.-++.+++.++..++ . .+...+.+.+.|+++.|..++.+.+.+. . ...+...
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La-~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELA-E-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHH-c-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 23333789999999999999999999999999999 5 7778899999999999999997643332 2 2334677
Q ss_pred HHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH-HHh-----CCHHHHHHHhccCC
Q 035507 486 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV-IDA-----GLIGPLVNLLQNAE 559 (684)
Q Consensus 486 ~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-----g~l~~Li~ll~~~~ 559 (684)
++++...+...-... ..++..+..++.+. ++..+..|..+++.|+.. .+..+.+ ... .++........++.
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 788875443322111 23555666677777 899999999999999854 4555555 332 23555555566678
Q ss_pred HhHHHHHHHHHHHhhcCCCH---HH----HHHH---HHCCChH-HHHhhccCCChHHHHHHHHHHHHHHhcccccccCCC
Q 035507 560 FDIKEEAAWAISNASSRGTH---DQ----IKYL---VTEGCIK-PLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDS 628 (684)
Q Consensus 560 ~~v~~~a~~aL~nl~~~~~~---~~----~~~l---~~~g~l~-~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~ 628 (684)
.++|..+..++.++...+.. +. .... ...+-.. .+.++++.+=|+++..++..+..++...-.
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg------ 424 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG------ 424 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH------
Confidence 89999999999999765432 11 1111 1233445 788889888899999999999999976421
Q ss_pred CCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507 629 DIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 629 ~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f 672 (684)
........|.++.+-+=....+.+..+.-.+++++.-
T Consensus 425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 2345556677776665555667888777777777664
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.69 E-value=2e-13 Score=148.97 Aligned_cols=367 Identities=18% Similarity=0.207 Sum_probs=278.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHh
Q 035507 294 PRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVL 373 (684)
Q Consensus 294 ~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~ 373 (684)
+.+...|++.+ .+....++.+|..+... ...... ..+..+.|...|.++++.||..+++.+++++.++....+.+.
T Consensus 41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~~-~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSN-REQVELICDILKRLLSA-LSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcC-hHHHHHHHHHHHHHHhc-cCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 34778888776 66677888899988872 222222 456789999999999999999999999999988877677778
Q ss_pred hcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHH
Q 035507 374 SEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDK 453 (684)
Q Consensus 374 ~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~ 453 (684)
+.+.++.++.++ .+++..+...|+.+|.+++...+........+.++.|..++...+..++..++.++.+++ ..+++.
T Consensus 117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~-~~S~~~ 194 (503)
T PF10508_consen 117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA-SHSPEA 194 (503)
T ss_pred CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH-hcCHHH
Confidence 889999999998 888999999999999999987643333334566888999998888999999999999999 889999
Q ss_pred HHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCC-Ch---h-HHHHHHHHH
Q 035507 454 IQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KN---S-IKKEVSWII 528 (684)
Q Consensus 454 ~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-~~---~-v~~~a~~~L 528 (684)
.+.+.+.|+++.++..+.+++.-++..|+.++..++. .+...+.+.+.|+++.|..++.+.. ++ . .--......
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 9999999999999999999999999999999999999 6668899999999999999996652 22 1 112233566
Q ss_pred HHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHH-HHCC-----ChHHHHhhccCCC
Q 035507 529 SNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYL-VTEG-----CIKPLCDLLQCAD 602 (684)
Q Consensus 529 ~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l-~~~g-----~l~~L~~lL~~~~ 602 (684)
++++...+..+.... ..++..+.+++.+.|...+..|..+++.+.. +.+....| ...+ ++..+.+...+..
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 777764444433222 2356677777888899999999999999986 56666665 3332 4666677777888
Q ss_pred hHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhc--hHH-HHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 035507 603 PKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAE--GLE-KIENLQSHDNNEIHEKSVKILETYWCG 674 (684)
Q Consensus 603 ~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g--~~~-~L~~L~~~~~~~i~~~a~~ii~~~f~~ 674 (684)
.+++..++.++..++......... .-.+.....++..| -.. .+..+.+.+=+|++-.|+.++...+..
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~----~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDN----DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 899999999999999876542110 00111122222222 122 566666777799999999998877543
No 15
>PRK09687 putative lyase; Provisional
Probab=99.64 E-value=2.5e-14 Score=143.28 Aligned_cols=255 Identities=14% Similarity=0.133 Sum_probs=203.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~ 371 (684)
-++.|..+|.+++ ..+|..|+++|..+.. ..+++.+..++.++++.+|..++++|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 4678889998888 8999999999998865 24578888889999999999999999998532211
Q ss_pred HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh
Q 035507 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN 451 (684)
Q Consensus 372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~ 451 (684)
....++.|..++.++++..++..++.+|++++...... ...+++.+...+.++++.|+..++++|+.+. + .
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-~--~ 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-D--E 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-C--H
Confidence 11246677777668889999999999999997654222 2335666777788899999999999998876 2 1
Q ss_pred HHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 035507 452 DKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNI 531 (684)
Q Consensus 452 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl 531 (684)
..++.|+.+|.++++.++..|+.+||.+..+++ .+++.|+..+.+. +..||..|+++|+.+
T Consensus 159 ---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 159 ---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence 267899999999999999999999999944333 3567899999988 999999999999997
Q ss_pred hcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCChHHHHHHH
Q 035507 532 ACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ-CADPKIVTVCL 610 (684)
Q Consensus 532 ~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~-~~~~~v~~~al 610 (684)
... .++|.|++.+.+++ ++..|+.+|+++-. ++ .++.|..+++ ++|+.++..+.
T Consensus 220 ~~~-----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KDK-----------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CCh-----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence 331 37899999998766 67889999998854 32 5788888886 78999999999
Q ss_pred HHHHH
Q 035507 611 EGLEN 615 (684)
Q Consensus 611 ~~L~~ 615 (684)
+++..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 88864
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=7.7e-14 Score=134.39 Aligned_cols=311 Identities=14% Similarity=0.146 Sum_probs=253.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHhcCCh
Q 035507 258 VWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTKVVIEHDAV 336 (684)
Q Consensus 258 L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i 336 (684)
-.+++..+-+.++.++..+....+ .+.++.+...++.+|.... +.++-...+.++..-|.+++.+|+.+++.++.
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 456778888899999988766543 4567888899999996532 36788888888988888899999999999999
Q ss_pred HHHHHhcCC-CChHHHHHHHHHHHHhhCCCC---------CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507 337 PIFVKLLAS-PSDDVREQAVWALGNVAADSS---------GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR 406 (684)
Q Consensus 337 ~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~---------~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~ 406 (684)
+.+.+.|.. +...+.+.+.|++.-+..++. +....+...|++..|+..+.-..++.+...++.+|+.++-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999976655 445677889999999986653 2345677788899999999888889999999999999987
Q ss_pred CCCCCChhhhhchHHHHHHHhcC-CcHH---HHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC--CCCcccHhH
Q 035507 407 GKPRPLFDQVRPALPALAQLIHS-NDEQ---VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG--HPSPSVLTP 480 (684)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~lL~~-~d~~---v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~v~~~ 480 (684)
....-......|++..++.++.+ ++.. ....++..|+.++ ++++....+++.|+.+.++.++. ..+|.+...
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA--G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~ 349 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA--GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQE 349 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh--CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence 75444445568999999999986 3333 4567888899998 88888999999999999998874 367889999
Q ss_pred HHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCC
Q 035507 481 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH-NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAE 559 (684)
Q Consensus 481 al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~ 559 (684)
++.+++-++-..++....+++.|+-...++-|.- +....+++.|||.+.|++..+.++...++.. .++.|+......+
T Consensus 350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h 428 (461)
T KOG4199|consen 350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANH 428 (461)
T ss_pred HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcC
Confidence 9999999999999999999999999999998854 3356899999999999999888888877776 5777888777778
Q ss_pred HhHHHHHHHHHHHhhc
Q 035507 560 FDIKEEAAWAISNASS 575 (684)
Q Consensus 560 ~~v~~~a~~aL~nl~~ 575 (684)
+.....|-.||..+-.
T Consensus 429 ~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 429 ETCEAAAKAALRDLGC 444 (461)
T ss_pred ccHHHHHHHHHHhcCc
Confidence 8888888888887744
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.62 E-value=5.2e-14 Score=139.63 Aligned_cols=351 Identities=16% Similarity=0.114 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHHHHhcCCC---CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHH
Q 035507 263 NNLQLEATTQFQKLLSIES---MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIF 339 (684)
Q Consensus 263 ~~~~~~a~~~L~~l~s~~~---~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~L 339 (684)
..+...+..++.+....+. ..+..-++++.+..|.+..++++ .++..+..++|+|+|.++.+.|..+.+.|+-..+
T Consensus 56 ~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqiv 134 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQIV 134 (604)
T ss_pred chhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCceeh
Confidence 3444445555555442221 12233467888999999998886 7999999999999999999999999999998888
Q ss_pred HHhcCC----C---ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc-cCCchHHHHHHHHHHHHhccCC--C
Q 035507 340 VKLLAS----P---SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN-EHTELSMLRIATTTLSNLCRGK--P 409 (684)
Q Consensus 340 i~lL~~----~---~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~-~~~~~~v~~~a~~~L~nL~~~~--~ 409 (684)
++.|+. . +.+...-+...|.|...++...|..+.+.|+++.|...+- ...+....+.......|+.+.. .
T Consensus 135 id~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~ 214 (604)
T KOG4500|consen 135 IDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEM 214 (604)
T ss_pred HhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHh
Confidence 887765 2 2356667788899999999999999999999998877763 2233333333322222222211 0
Q ss_pred CCChhhhhchHHHHHHHhcC-CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCc-------ccHhH
Q 035507 410 RPLFDQVRPALPALAQLIHS-NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSP-------SVLTP 480 (684)
Q Consensus 410 ~~~~~~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~-------~v~~~ 480 (684)
-.++.....+.-.+++++.+ -.+++.+-+...+.+.+ + ++...-.+.+.|.+..++.+++. +.. .....
T Consensus 215 ~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~a-e-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 215 LYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAA-E-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred hhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHh-c-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 11122223344445555543 35667777788888888 4 44444557788999999888865 211 12233
Q ss_pred HHHHHHHHHcCChhhHHHHHhcC-ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc--
Q 035507 481 ALWTVGNIVMGDDFQTQCIINHG-AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN-- 557 (684)
Q Consensus 481 al~~L~nl~~~~~~~~~~~i~~g-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~-- 557 (684)
++....-+..|++ ..+.+...+ +++.+..++.+. +......+.-+++|+++.+ +...++++.+++..|+.++..
T Consensus 293 ~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 293 IAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred hhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444556665 455566555 899999999999 9999999999999999876 556668889999999999865
Q ss_pred ---CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 558 ---AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 558 ---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
++.+++..++.||.|++.. ......+...|+.+.+.-.++...|++...-+..++.+....+
T Consensus 370 ~vdgnV~~qhA~lsALRnl~IP--v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLMIP--VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred CCCccchhHHHHHHHHHhcccc--CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 4778889999999999873 3455667899999999999999999999999999987766544
No 18
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.4e-12 Score=128.43 Aligned_cols=376 Identities=19% Similarity=0.140 Sum_probs=281.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH
Q 035507 262 DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK 341 (684)
Q Consensus 262 ~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~ 341 (684)
...+...|+..|.+++..- ..-..+...+++..||+.|..++ .++.......|..++- -.+++..+.+.|++..|+.
T Consensus 276 QeqLLrva~ylLlNlAed~-~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~k 352 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAEDI-SVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLK 352 (791)
T ss_pred HHHHHHHHHHHHHHHhhhh-hHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHH
Confidence 3455556778888877543 34456788899999999999888 7888888899999887 6678888999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHH
Q 035507 342 LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP 421 (684)
Q Consensus 342 lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~ 421 (684)
++...+++++...+..+.|++-++. .|..+...|.+|.+..++.+.... ..|+..+..++..+..........+++
T Consensus 353 lfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci~ 428 (791)
T KOG1222|consen 353 LFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCIK 428 (791)
T ss_pred hcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHHH
Confidence 9999999999999999999998875 477788899999999999554443 335666777777765555666688999
Q ss_pred HHHHHhcC-CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc-CCCCcccHhHHHHHHHHHHcCChhhHHHH
Q 035507 422 ALAQLIHS-NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL-GHPSPSVLTPALWTVGNIVMGDDFQTQCI 499 (684)
Q Consensus 422 ~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~ 499 (684)
.+.+.+-. .+.++-.+.+..-.|++ .+..+.+.+.+...+..|++.- +..++ -.+..+.|++.+.......+
T Consensus 429 ~lmk~v~~~~~~~vdl~lia~ciNl~--lnkRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~F 502 (791)
T KOG1222|consen 429 LLMKDVLSGTGSEVDLALIALCINLC--LNKRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMF 502 (791)
T ss_pred HHHHHHHhcCCceecHHHHHHHHHHH--hccccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHH
Confidence 98876654 44555444444445777 4556667677766777776653 33332 23456778887665444445
Q ss_pred HhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCC
Q 035507 500 INHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRG 577 (684)
Q Consensus 500 i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~ 577 (684)
++ .+.-|..++....+...-.++..+++|++..+-+..+.+-+.+++|.+-..|..+ ..+++-....+++.++.
T Consensus 503 id--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-- 578 (791)
T KOG1222|consen 503 ID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-- 578 (791)
T ss_pred HH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--
Confidence 54 5666667776654677888999999999886666666667788999999999876 67788888888998887
Q ss_pred CHHHHHHHHHCCChHHHHhhccC--CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC
Q 035507 578 THDQIKYLVTEGCIKPLCDLLQC--ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH 655 (684)
Q Consensus 578 ~~~~~~~l~~~g~l~~L~~lL~~--~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~ 655 (684)
+...+..+...|+++.++++|+. .|.+++...+..+..++...... .-++.+...-..+.+|.++
T Consensus 579 d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr-------------~~miket~~~AylIDLMHD 645 (791)
T KOG1222|consen 579 DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTR-------------RLMIKETALGAYLIDLMHD 645 (791)
T ss_pred hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH-------------HHHHhhccchHHHHHHHhc
Confidence 55666677789999999999985 46778888888888888774332 3456666666778899999
Q ss_pred CCHHHHHHHHHH
Q 035507 656 DNNEIHEKSVKI 667 (684)
Q Consensus 656 ~~~~i~~~a~~i 667 (684)
.|.+|++.+...
T Consensus 646 kN~eiRkVCDn~ 657 (791)
T KOG1222|consen 646 KNAEIRKVCDNA 657 (791)
T ss_pred ccHHHHHHHHHH
Confidence 999887654433
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.4e-12 Score=123.24 Aligned_cols=318 Identities=17% Similarity=0.225 Sum_probs=248.8
Q ss_pred HcCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhC
Q 035507 289 ESGVVPRFVEFL---MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAA 363 (684)
Q Consensus 289 ~~g~i~~Lv~lL---~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~ 363 (684)
..|..+.++.++ .+++ ..+-..++.+|..+..+.|+ +.+..++..++.+|.. ++.++....+..+..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 345566555444 3344 67888888898888876665 4456778899998865 667787778888888787
Q ss_pred CCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCC-CCh---------hhhhchHHHHHHHhcC-CcH
Q 035507 364 DSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR-PLF---------DQVRPALPALAQLIHS-NDE 432 (684)
Q Consensus 364 ~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~-~~~---------~~~~~~l~~L~~lL~~-~d~ 432 (684)
..+..|+.+.+.++++.+...++......+.+.++|++.-|...+.. ..+ ..-.+++..|+..+.. -||
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 77778999999999999998887776668999999999999877622 111 1225567778887764 479
Q ss_pred HHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCC-cc---cHhHHHHHHHHHHcCChhhHHHHHhcCChHHH
Q 035507 433 QVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS-PS---VLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 508 (684)
Q Consensus 433 ~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~---v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L 508 (684)
.+...++.+|..++ ..++..+.+.+.|++..++.++.+.+ .. ....++..|..++ |+++....+++.|+.+.+
T Consensus 257 ~~L~~l~~tl~~lA--Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~i 333 (461)
T KOG4199|consen 257 DSLVSLSTTLKALA--VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKI 333 (461)
T ss_pred cHHHHHHHHHHHHH--HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHH
Confidence 99999999999999 67788999999999999999998843 33 4456777777776 566688899999999999
Q ss_pred HHHh-ccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCCCHHHHHHH
Q 035507 509 LALL-IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRGTHDQIKYL 585 (684)
Q Consensus 509 ~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l 585 (684)
+.++ .+..++.|..+++.+++-++-..|++-..+++.|+-...++.|+.- ...+++.|||++.|++.. +.+++..+
T Consensus 334 i~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~ 412 (461)
T KOG4199|consen 334 ITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTIL 412 (461)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchH
Confidence 9987 3334889999999999999998899999999999999999988754 667999999999999985 35666666
Q ss_pred HHCCChHHHHhhccCCChHHHHHHHHHHHHH
Q 035507 586 VTEGCIKPLCDLLQCADPKIVTVCLEGLENI 616 (684)
Q Consensus 586 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~~i 616 (684)
+.. +++.|...-....+.....+-.+|+.+
T Consensus 413 l~~-GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 413 LAN-GIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred Hhc-cHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 665 577788777777777777777777654
No 20
>PRK09687 putative lyase; Provisional
Probab=99.59 E-value=2.9e-13 Score=135.64 Aligned_cols=253 Identities=15% Similarity=0.079 Sum_probs=199.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.++.+...|.+.|..++..|+++|..+-. ..+++.+..++.+++ +.+|..|+++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc----
Confidence 45788999999999999999999987532 235677888888887 99999999999998752211
Q ss_pred HHhcCChHHHHHh-cCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 330 VIEHDAVPIFVKL-LASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 330 i~~~g~i~~Li~l-L~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
...+++.|..+ ++++++.||..|+.+||+++...... ...++..+...+ .+.+..++..++++|+.+..
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-- 157 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC--
Confidence 12357788876 67789999999999999996443221 111344455555 56688999999999976542
Q ss_pred CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
...++.|+.++.++++.++..|+.+|+.+. ..++ .+++.|+..+.+.++.++..|++.|+.+
T Consensus 158 --------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 --------EAAIPLLINLLKDPNGDVRNWAAFALNSNK-YDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred --------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-CCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 357899999999999999999999999986 3332 3567899999999999999999999986
Q ss_pred HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc-cCCHhHHHHHH
Q 035507 489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ-NAEFDIKEEAA 567 (684)
Q Consensus 489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~-~~~~~v~~~a~ 567 (684)
-. + .++|.|++.|.++ + ++..|+.+|+++... ..+|.|..++. ..|..++..|.
T Consensus 220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~~-----------~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGDK-----------TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCCH-----------hHHHHHHHHHhhCCChhHHHHHH
Confidence 32 2 3789999999887 5 688899999998542 26899999997 67999999999
Q ss_pred HHHH
Q 035507 568 WAIS 571 (684)
Q Consensus 568 ~aL~ 571 (684)
+++.
T Consensus 275 ~a~~ 278 (280)
T PRK09687 275 DKLK 278 (280)
T ss_pred HHHh
Confidence 9875
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.56 E-value=1.9e-12 Score=128.69 Aligned_cols=368 Identities=12% Similarity=0.044 Sum_probs=271.8
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcC---CC---CHHHHHHHHHHHHHHhc
Q 035507 248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMR---ED---YPQLQFQAAWALTNIAS 321 (684)
Q Consensus 248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~---~~---~~~v~~~A~~~L~~l~~ 321 (684)
.+.++.+.+..+|+|.++..+..++|.++.+.+.+++..+.+.|+-..+++.|+. .+ +.+.-..+...|.|..-
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 3577888888889999999999999999999988999999999997777777754 12 23556667788999999
Q ss_pred CCchhHHHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHHHhccCCchHHHHHHH
Q 035507 322 GTSENTKVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLAQLNEHTELSMLRIAT 398 (684)
Q Consensus 322 ~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~ 398 (684)
++.+.+..+++.|+++.|...+.- .+....+......+|+..-- +...+...+......+++++.....+++...+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999999987654 66777788887777776321 222334445566777888887777778888888
Q ss_pred HHHHHhccCCCCCChhhhhchHHHHHHHhcC-Cc-------HHHHHHHHHHHHhhccCCChHHHHHHHHhc-hHHHHHHh
Q 035507 399 TTLSNLCRGKPRPLFDQVRPALPALAQLIHS-ND-------EQVLTDACWALFGLSGDRNNDKIQAVIEAG-VCGRLVEL 469 (684)
Q Consensus 399 ~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-~d-------~~v~~~al~~L~~L~~~~~~~~~~~~~~~g-~l~~L~~l 469 (684)
..+...+.++...-.....|.+..+..+++. .+ -.....++....-+. .++ +..+.+...+ ++..+...
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll-tGD-eSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL-TGD-ESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh-cCc-hHHHHHhcCcHHHHHHHHH
Confidence 8888888887544445556777778887764 22 223344444444455 444 4455565555 89999999
Q ss_pred cCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC----CChhHHHHHHHHHHHHhcCChHHHHHHHHh
Q 035507 470 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN----HKNSIKKEVSWIISNIACGNREQIQAVIDA 545 (684)
Q Consensus 470 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 545 (684)
+.+.+......+.-+|||+++.++ ..-.+++.+++..|+.++... .+.+++.+++.+|.|++--- .+...++.+
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~a 401 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPA 401 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhcccc
Confidence 999999999999999999998766 566688889999999998542 15678888999999998632 445668889
Q ss_pred CCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCChH-HHHHHHHHHHHHHhcc
Q 035507 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLV-TEGCIKPLCDLLQCADPK-IVTVCLEGLENILKVG 620 (684)
Q Consensus 546 g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~g~l~~L~~lL~~~~~~-v~~~al~~L~~il~~~ 620 (684)
|+.+.++..++...+.+...-...+.-+..+ .+.....+. +...++.|++.-+++|.. +..-....+.-+.+..
T Consensus 402 GvteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs 477 (604)
T KOG4500|consen 402 GVTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHS 477 (604)
T ss_pred chHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhh
Confidence 9999999999999998888887777766552 222223333 234567777777776654 5555666666666553
No 22
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.56 E-value=2.2e-13 Score=151.92 Aligned_cols=328 Identities=19% Similarity=0.200 Sum_probs=248.1
Q ss_pred hhhhccHHHHHHHhcCCC---HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHH---H-------HhhcCC------CC
Q 035507 245 HTKLEILPMMVAGVWSDD---NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRF---V-------EFLMRE------DY 305 (684)
Q Consensus 245 ~~~~~~l~~lv~~L~s~~---~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~L---v-------~lL~~~------~~ 305 (684)
....|.++.+++.+...| .+.+..|-.+|.+++...++....=.+..+++.| . .++... ..
T Consensus 231 mR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~ 310 (2195)
T KOG2122|consen 231 MRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS 310 (2195)
T ss_pred HHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 345689999999998543 5778888899999987766322221222222222 2 222221 11
Q ss_pred HHHHH-HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC------------CChHHHHHHHHHHHHhhCCCCCCch-h
Q 035507 306 PQLQF-QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS------------PSDDVREQAVWALGNVAADSSGCRD-L 371 (684)
Q Consensus 306 ~~v~~-~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~------------~~~~v~~~a~~~L~nLa~~~~~~r~-~ 371 (684)
.+-+. .|+.+|..++. ++++|..+.+.|++..+-.|+.- ....+|..|..+|.||...+...+. .
T Consensus 311 ~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L 389 (2195)
T KOG2122|consen 311 DEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL 389 (2195)
T ss_pred cchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence 23444 67777888887 89999999999999998887742 1357899999999999965544433 4
Q ss_pred HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChh--hhhchHHHHHHH-hcCCcHHHHHHHHHHHHhhccC
Q 035507 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFD--QVRPALPALAQL-IHSNDEQVLTDACWALFGLSGD 448 (684)
Q Consensus 372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~--~~~~~l~~L~~l-L~~~d~~v~~~al~~L~~L~~~ 448 (684)
....|++..++..| .....++......+|.||+......... ...+.+-.|+.. ++...+..+..++.+|+||+ .
T Consensus 390 Cs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLS-A 467 (2195)
T KOG2122|consen 390 CSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLS-A 467 (2195)
T ss_pred hhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhh-h
Confidence 45678999999999 4555678888999999999886332222 224555555543 45667788999999999999 6
Q ss_pred CChHHHHHHHH-hchHHHHHHhcCCC----CcccHhHHHHHHHHHH---cCChhhHHHHHhcCChHHHHHHhccCCChhH
Q 035507 449 RNNDKIQAVIE-AGVCGRLVELLGHP----SPSVLTPALWTVGNIV---MGDDFQTQCIINHGAVPCLLALLIHNHKNSI 520 (684)
Q Consensus 449 ~~~~~~~~~~~-~g~l~~L~~lL~~~----~~~v~~~al~~L~nl~---~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v 520 (684)
...++...+.. .|.+..|+.+|... .-.+.+.|-.+|.|++ ..+..+++.+.+++.+..|++.|.+. +..+
T Consensus 468 HcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTi 546 (2195)
T KOG2122|consen 468 HCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTI 546 (2195)
T ss_pred cccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEE
Confidence 55555555544 48999999999764 3467777777777764 45667889999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcC
Q 035507 521 KKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR 576 (684)
Q Consensus 521 ~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~ 576 (684)
..++|.+|+|+.+.+++.-+++++.|.++.|.+++.+++..+..-++.+|.|++..
T Consensus 547 VSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 547 VSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred eecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999864
No 23
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=6.2e-12 Score=140.01 Aligned_cols=395 Identities=18% Similarity=0.178 Sum_probs=269.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
+.++-+....+|.|+..|..|+..|..+...-... ..-.-..+.+.|.+.+.+++.+ +|..|+++++.++...+..+.
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~-~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT-LQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc-cchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchH
Confidence 35777888888999999999999999876543311 1101112456777777787755 999999999999885542222
Q ss_pred HHHh-cCChHHHHHhcC----CCChHHHHHHHHHHHHhhCCCCCC-chhHhhcCCHHHHHHHhc-cCCchHHHHHHHHHH
Q 035507 329 VVIE-HDAVPIFVKLLA----SPSDDVREQAVWALGNVAADSSGC-RDLVLSEGALIPLLAQLN-EHTELSMLRIATTTL 401 (684)
Q Consensus 329 ~i~~-~g~i~~Li~lL~----~~~~~v~~~a~~~L~nLa~~~~~~-r~~i~~~g~l~~Ll~~L~-~~~~~~v~~~a~~~L 401 (684)
.+-. ...+|.++..+. .++......++.+|..++...|.+ +..+. .++...+.... +.-+..++..|+.+|
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 2221 245676666554 467777788999999998777653 22221 12333333332 345788999999999
Q ss_pred HHhccCCC---CCChhhhhchHHHHHHHhcCCc----------------HHHHHHHHHHHHhhccCCChHHHHHHHHhch
Q 035507 402 SNLCRGKP---RPLFDQVRPALPALAQLIHSND----------------EQVLTDACWALFGLSGDRNNDKIQAVIEAGV 462 (684)
Q Consensus 402 ~nL~~~~~---~~~~~~~~~~l~~L~~lL~~~d----------------~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~ 462 (684)
..+++..| .........+++.++.++...+ ..--..|..++-.++..-..+. +-.-+
T Consensus 274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~----v~p~~ 349 (1075)
T KOG2171|consen 274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ----VLPPL 349 (1075)
T ss_pred HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh----ehHHH
Confidence 99988842 1222244677777777765311 1123445556655551112121 11224
Q ss_pred HHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507 463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV 542 (684)
Q Consensus 463 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 542 (684)
++.+-.++++.++.-|.+|+.+|+.++.|+.+.....++ .+++.++..|.++ ++.||..|+.+++.++..-...++.-
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 677778889999999999999999999999987776554 7889999999999 99999999999999998766777777
Q ss_pred HHhCCHHHHHHHhccC-CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChH-HHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507 543 IDAGLIGPLVNLLQNA-EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIK-PLCDLLQCADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 543 ~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~-~L~~lL~~~~~~v~~~al~~L~~il~~~ 620 (684)
...-++|.|+..+++. +++++..|+.|+.|++.....+....... ++++ .+.-++.++.+.++..++.+|..+....
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 7777888999999876 78999999999999998776655433222 2455 4444666788999999999999999876
Q ss_pred cccccCCCCCcchhHHHHHHHHhchHHHHHHh-hcCCCHHHHHHHHHHH
Q 035507 621 EAEKNTDSDIGDINQFAQLVEEAEGLEKIENL-QSHDNNEIHEKSVKIL 668 (684)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L-~~~~~~~i~~~a~~ii 668 (684)
+.. ..+|...+ +..|... ++..+.+.+....+.+
T Consensus 507 ~~~---------F~pY~d~~-----Mp~L~~~L~n~~~~d~r~Lrgktm 541 (1075)
T KOG2171|consen 507 QEK---------FIPYFDRL-----MPLLKNFLQNADDKDLRELRGKTM 541 (1075)
T ss_pred hhh---------hHhHHHHH-----HHHHHHHHhCCCchhhHHHHhhHH
Confidence 653 23455554 3445444 4444455555544433
No 24
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.55 E-value=7.9e-13 Score=147.52 Aligned_cols=364 Identities=19% Similarity=0.208 Sum_probs=274.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCCchhHH
Q 035507 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED--YPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~--~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
...+..++...|.+ .-++.|..+. ..+.....+...|.+|.|+++|.-++ +.+.+..|-.+|.||....++...
T Consensus 199 s~sllsml~t~D~e---e~ar~fLemS-ss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr 274 (2195)
T KOG2122|consen 199 SNSLLSMLGTDDEE---EMARTFLEMS-SSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKR 274 (2195)
T ss_pred hhHHhhhcccCCHH---HHHHHHHHhc-cCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhh
Confidence 34555566555543 3455565543 33456677889999999999996543 367889999999999986666554
Q ss_pred HHHhcCChHHHHH----------hcCC-----CCh--HHH-HHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc---
Q 035507 329 VVIEHDAVPIFVK----------LLAS-----PSD--DVR-EQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE--- 387 (684)
Q Consensus 329 ~i~~~g~i~~Li~----------lL~~-----~~~--~v~-~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~--- 387 (684)
.-.+.-++..|=+ .+.. ... +-+ -.|+.+|..++.+. ++|..+.+.|+++.+-.++.-
T Consensus 275 ~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vDh~ 353 (2195)
T KOG2122|consen 275 GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVDHE 353 (2195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4333333333221 1111 111 122 25666677776665 468888999999998887631
Q ss_pred --------CCchHHHHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHH
Q 035507 388 --------HTELSMLRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAV 457 (684)
Q Consensus 388 --------~~~~~v~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~ 457 (684)
.....+++++..+|.||..++ .........+++..++..|.+..+++..-....|.||+-..+......+
T Consensus 354 mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvL 433 (2195)
T KOG2122|consen 354 MHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVL 433 (2195)
T ss_pred hcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHH
Confidence 113578999999999999998 2333344589999999999988888988888999999933334444555
Q ss_pred HHhchHHHHHHh-cCCCCcccHhHHHHHHHHHHcCChhhHHHHHh-cCChHHHHHHhccCC---ChhHHHHHHHHHHHHh
Q 035507 458 IEAGVCGRLVEL-LGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALLIHNH---KNSIKKEVSWIISNIA 532 (684)
Q Consensus 458 ~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~-~g~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~ 532 (684)
.+.|-+..|+.. |...++...+..+.+|+||+.++.++...+-+ .|.+..|+.+|.+.. ...+...|..+|.|+.
T Consensus 434 rE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVS 513 (2195)
T KOG2122|consen 434 RETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVS 513 (2195)
T ss_pred HhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHH
Confidence 566888887776 55567788899999999999888777666553 589999999997651 3467788889999886
Q ss_pred c---CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHH
Q 035507 533 C---GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVC 609 (684)
Q Consensus 533 ~---~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~a 609 (684)
. .+.+++|.+.+.+++..|++.|++.+..+..++|.+|.||... +++..++|++.|.+..|.+++++.+.-+..-+
T Consensus 514 S~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GS 592 (2195)
T KOG2122|consen 514 SLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGS 592 (2195)
T ss_pred hHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhH
Confidence 4 5778889999999999999999999999999999999999874 67778899999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 035507 610 LEGLENILKVG 620 (684)
Q Consensus 610 l~~L~~il~~~ 620 (684)
..+|.|++..-
T Consensus 593 aaALrNLln~R 603 (2195)
T KOG2122|consen 593 AAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHhcCC
Confidence 99999999875
No 25
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.54 E-value=3.6e-13 Score=144.75 Aligned_cols=364 Identities=16% Similarity=0.142 Sum_probs=256.7
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC--CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 035507 246 TKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIES--MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGT 323 (684)
Q Consensus 246 ~~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~--~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~ 323 (684)
.+++.++.+|.++.+.+.++|..|+.+|+|+..... .+.-.+.+.+.|+.++++|....+.+++...+.+|.|+++ +
T Consensus 272 rqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~ 350 (717)
T KOG1048|consen 272 RQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-N 350 (717)
T ss_pred HHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-h
Confidence 457899999999999999999999999999987766 4788889999999999999975557999999999999999 4
Q ss_pred chhHHHHHhcCChHHHHHhcCC----------C----ChHHHHHHHHHHHHhhCCCCCCchhHhh-cCCHHHHHHHhc--
Q 035507 324 SENTKVVIEHDAVPIFVKLLAS----------P----SDDVREQAVWALGNVAADSSGCRDLVLS-EGALIPLLAQLN-- 386 (684)
Q Consensus 324 ~~~~~~i~~~g~i~~Li~lL~~----------~----~~~v~~~a~~~L~nLa~~~~~~r~~i~~-~g~l~~Ll~~L~-- 386 (684)
+..+..++ ..++..|..-.-. + ...+..++..+|.|++....+.|+.+.+ .|.|..|+..+.
T Consensus 351 D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~ 429 (717)
T KOG1048|consen 351 DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA 429 (717)
T ss_pred hHHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH
Confidence 44555444 3456666664322 1 2568889999999999877776777665 567888888774
Q ss_pred ---cCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC----------C---
Q 035507 387 ---EHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR----------N--- 450 (684)
Q Consensus 387 ---~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~----------~--- 450 (684)
...|....++++..+.|++..-...........+...-.....+.+. ....++..-. .. +
T Consensus 430 i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~---~~~gcf~~k~-~k~~~~~~~~~~pe~~ 505 (717)
T KOG1048|consen 430 IQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPA---ESVGCFGFKK-RKSDDNCDDLPIPERA 505 (717)
T ss_pred HHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcc---cccccccchh-hhchhcccccCCcccc
Confidence 23466778899999999986541110000000000000000011111 2222332222 11 0
Q ss_pred --hHHHHHHHHhchHHHHHHhc-CCCCcccHhHHHHHHHHHHcCChh----hHHHH-HhcCChHHHHHHhccCCChhHHH
Q 035507 451 --NDKIQAVIEAGVCGRLVELL-GHPSPSVLTPALWTVGNIVMGDDF----QTQCI-INHGAVPCLLALLIHNHKNSIKK 522 (684)
Q Consensus 451 --~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~----~~~~~-i~~g~l~~L~~lL~~~~~~~v~~ 522 (684)
+.-.+.+....++..-..+| .+.++.+.+.++.+|-|++.+... ....+ ....++|.++++|+.+ +..+.+
T Consensus 506 ~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~ 584 (717)
T KOG1048|consen 506 TAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVR 584 (717)
T ss_pred cCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHH
Confidence 00111123333444433333 345778899999999999987642 33334 5678999999999999 999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC------CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHh
Q 035507 523 EVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA------EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCD 596 (684)
Q Consensus 523 ~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~ 596 (684)
.++.+|.|++.+. ..+.++..++++.|++.|... +.++...++.+|.|++. .+.+..+.+.+.+.++.|+.
T Consensus 585 s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~-~~~~nAkdl~~~~g~~kL~~ 661 (717)
T KOG1048|consen 585 SAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVR-KNVLNAKDLLEIKGIPKLRL 661 (717)
T ss_pred HHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHH-HhHHHHHHHHhccChHHHHH
Confidence 9999999998863 345566688999999999754 47888999999999996 36888999999999999999
Q ss_pred hccCC-ChHHHHHHHHHHHHHHhc
Q 035507 597 LLQCA-DPKIVTVCLEGLENILKV 619 (684)
Q Consensus 597 lL~~~-~~~v~~~al~~L~~il~~ 619 (684)
+..+. +++....+-..+..+=.+
T Consensus 662 I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 662 ISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHH
Confidence 88764 567777776666655443
No 26
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.53 E-value=4.4e-12 Score=148.42 Aligned_cols=276 Identities=18% Similarity=0.190 Sum_probs=220.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
..++.|++.|.++++.+|..|+..|..+.. .+.++.|++.|++++ +.+|..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc-----
Confidence 356899999999999999999999988531 346789999998887 899999999999886421
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
...+.|...|.++++.+|..|+.+|+.+... ....++..| .+++..++..|+.+|..+-.
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAAL-GDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHh-cCCCHHHHHHHHHHHhcccC--
Confidence 1236778888999999999999999987421 133566666 78899999999999987521
Q ss_pred CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
.+.+..++.++++.|+..++.+|+.+. ... ...++.|..+++++++.+|..|+.+|+.+
T Consensus 744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~-~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 -----------VESVAGAATDENREVRIAVAKGLATLG-AGG---------APAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred -----------cHHHHHHhcCCCHHHHHHHHHHHHHhc-ccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 244677899999999999999999988 321 12368889999999999999999999998
Q ss_pred HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHH
Q 035507 489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAW 568 (684)
Q Consensus 489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~ 568 (684)
..... +.+.+...|.++ ++.||..|+++|+.+... ..++.|+.++.+++..||..|++
T Consensus 803 g~~~~----------~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 803 GCPPD----------DVAAATAALRAS-AWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred CCcch----------hHHHHHHHhcCC-ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHH
Confidence 54221 235678888888 999999999999987432 25689999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHH
Q 035507 569 AISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLEN 615 (684)
Q Consensus 569 aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~ 615 (684)
+|+.+. +++. ..+.|...+++.++.|+..+..+|..
T Consensus 861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999972 2333 35677788999999999999998863
No 27
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.53 E-value=1.7e-12 Score=126.98 Aligned_cols=238 Identities=20% Similarity=0.216 Sum_probs=189.2
Q ss_pred hchHHHHHHHhc-CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh
Q 035507 417 RPALPALAQLIH-SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 495 (684)
Q Consensus 417 ~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 495 (684)
.+-++.++.+|. +.|+.+++.++.++++.+ ..+.....+.+.|+++.+..++.++++.++..|+.++.|++...+.+
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a--af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSA--AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhc--cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 566788999998 568999999999999988 66788888999999999999999999999999999999998766543
Q ss_pred HHHHHhcCChHHHHHHh-ccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507 496 TQCIINHGAVPCLLALL-IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS 574 (684)
Q Consensus 496 ~~~~i~~g~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~ 574 (684)
.+ ++. .++.+.+.. .++.+..++..+..+|.|++..+ +. +.++ .+.+|.++.++..++..+|..++++|.|++
T Consensus 89 ~~--Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~-~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 89 EQ--IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DY-HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HH--HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-ch-hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 32 232 455555544 33337789999999999997643 22 2333 347999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHCCChHHHHhhccCC-ChHHHHHHHHHHHHHHhcccccccC-CCCCcchhHHHHHHHHhc-hHHHHHH
Q 035507 575 SRGTHDQIKYLVTEGCIKPLCDLLQCA-DPKIVTVCLEGLENILKVGEAEKNT-DSDIGDINQFAQLVEEAE-GLEKIEN 651 (684)
Q Consensus 575 ~~~~~~~~~~l~~~g~l~~L~~lL~~~-~~~v~~~al~~L~~il~~~~~~~~~-~~~~~~~~~~~~~i~~~g-~~~~L~~ 651 (684)
. ++...+.++..+++..++.+++.. +.++...++..+.+|-..-.+.... ..+....+.....+.+.+ ..++|..
T Consensus 163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 8 788999999999999999999875 6788999999999996654443111 001133455667787777 6788999
Q ss_pred hhcCCCHHHHHHH
Q 035507 652 LQSHDNNEIHEKS 664 (684)
Q Consensus 652 L~~~~~~~i~~~a 664 (684)
|..|++++|++++
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 9999999999875
No 28
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.51 E-value=2.8e-11 Score=127.09 Aligned_cols=405 Identities=15% Similarity=0.091 Sum_probs=275.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTKVVIE 332 (684)
Q Consensus 254 lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~i~~ 332 (684)
++..+...+++....|.....+++.+.+++...+++.|.++.++.+++..+ .++.+.+.+-++...+.+.......+.+
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence 444556678888899999999999888888788999999999999997754 2577777777888888888889999999
Q ss_pred cCChHHHHHhcCCCC-hHHHHHHHHHHHHhhCCCCCCchhHh--hcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507 333 HDAVPIFVKLLASPS-DDVREQAVWALGNVAADSSGCRDLVL--SEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 333 ~g~i~~Li~lL~~~~-~~v~~~a~~~L~nLa~~~~~~r~~i~--~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
.+.++.|+++|.+++ ..+++.++.++.++...++..-.... ....+..+..++ ........+.-+...+++|....
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~ 172 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKD 172 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccch
Confidence 999999999999988 88999999999999876654211111 112233333333 32334444455555566665543
Q ss_pred CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHH---hhccCCChHHHH----HHHHhchHH--HHHHhcCCCCcccHhH
Q 035507 410 RPLFDQVRPALPALAQLIHSNDEQVLTDACWALF---GLSGDRNNDKIQ----AVIEAGVCG--RLVELLGHPSPSVLTP 480 (684)
Q Consensus 410 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~---~L~~~~~~~~~~----~~~~~g~l~--~L~~lL~~~~~~v~~~ 480 (684)
........++...+.-++.......+..|+.+++ .+. .+++.... ...+.|+.+ .+.+++++++...+..
T Consensus 173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL-~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRIL-RNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceee-ecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 3334444777777777777778889999999999 666 44443332 334446666 4556667777666677
Q ss_pred HHHHHHHHHcCC--------h-----hhHHHH--------------------------------------HhcCChHHHH
Q 035507 481 ALWTVGNIVMGD--------D-----FQTQCI--------------------------------------INHGAVPCLL 509 (684)
Q Consensus 481 al~~L~nl~~~~--------~-----~~~~~~--------------------------------------i~~g~l~~L~ 509 (684)
++.++.++...+ . -....+ .+...++...
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence 777766665443 0 000000 0000111111
Q ss_pred HHh----------------------------------------------------ccCCChhHHHHHHHHHHHHhcCChH
Q 035507 510 ALL----------------------------------------------------IHNHKNSIKKEVSWIISNIACGNRE 537 (684)
Q Consensus 510 ~lL----------------------------------------------------~~~~~~~v~~~a~~~L~nl~~~~~~ 537 (684)
+++ ... +...+.+|+-++.+++..-..
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~a 410 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSA 410 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHH
Confidence 111 112 344555555555555442111
Q ss_pred HHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHH
Q 035507 538 QIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENIL 617 (684)
Q Consensus 538 ~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il 617 (684)
-...+-...+..+|++++..++..++..+..|++|++...+ .....++..|+++.+.+++...++.++..++|+|++++
T Consensus 411 L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 411 LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 11112345688999999999999999999999999998543 34567889999999999999999999999999999998
Q ss_pred hcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 035507 618 KVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCG 674 (684)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~ 674 (684)
-.++...+ ..+-.--+...|..+.++++..|++.+.+++.++-.+
T Consensus 490 f~~de~~k------------~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 490 FNCDEEEK------------FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hcchHHHH------------HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 76554321 1111122356678888999999999999999988655
No 29
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=3.8e-11 Score=133.87 Aligned_cols=396 Identities=16% Similarity=0.165 Sum_probs=270.9
Q ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 250 ILPMMVAGVW-SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 250 ~l~~lv~~L~-s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
.++.|...++ +.|++++.-|+..+|+++.+..+.+..-....+-..++..+.++..+.+|..-+.++..++...-..
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-- 114 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-- 114 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc--
Confidence 5677787776 6789999999999999998865555544555666777777777666899999999999999833221
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC-chhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC-RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~-r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
--.+.++.|.+..+++++..|+.|+.+|+++...-... +..+. ...+.+.+.+ .+++..++..++.++..++..
T Consensus 115 --~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~~ 189 (1075)
T KOG2171|consen 115 --KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTM-TDPSSPVRVAAVRALGAFAEY 189 (1075)
T ss_pred --chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhc-cCCcchHHHHHHHHHHHHHHH
Confidence 11355777777788899999999999999998554331 11111 1122333344 444444999999999888776
Q ss_pred CC--CCChhhhhchHHHHHH----HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC--CcccHh
Q 035507 408 KP--RPLFDQVRPALPALAQ----LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP--SPSVLT 479 (684)
Q Consensus 408 ~~--~~~~~~~~~~l~~L~~----lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~ 479 (684)
.+ ..........+|.++. .+..+|.+....++.++..+. ...+......+. .++.....+..+. +..+|.
T Consensus 190 ~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~-e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~ 267 (1075)
T KOG2171|consen 190 LENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL-ESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRH 267 (1075)
T ss_pred hccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH-hhchHHHHHHHH-HHHHHHHHHhhcccccHHHHH
Confidence 53 2223333555565444 445677777788888888887 555444333332 2334444444332 345555
Q ss_pred HHHHHHHHHHcCChh---------------------------------------------hHHHHHh------------c
Q 035507 480 PALWTVGNIVMGDDF---------------------------------------------QTQCIIN------------H 502 (684)
Q Consensus 480 ~al~~L~nl~~~~~~---------------------------------------------~~~~~i~------------~ 502 (684)
.|+.+|..++...+. .....++ .
T Consensus 268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p 347 (1075)
T KOG2171|consen 268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP 347 (1075)
T ss_pred HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence 555555554433100 0011111 0
Q ss_pred CChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHH
Q 035507 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQI 582 (684)
Q Consensus 503 g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~ 582 (684)
-+++.+-.++.++ +..-|++|..+|+-++.|..+.+...++. +++..+..+.++++.||..|+.|++.++..-.++..
T Consensus 348 ~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 348 PLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence 1345666677888 99999999999999999998888776654 899999999999999999999999999987666654
Q ss_pred HHHHHCCChHHHHhhccCC-ChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHH
Q 035507 583 KYLVTEGCIKPLCDLLQCA-DPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIH 661 (684)
Q Consensus 583 ~~l~~~g~l~~L~~lL~~~-~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~ 661 (684)
++ ...-+++.|...+++. ++++...+..++-+++....+. ...+|...+-+. ++..|..++.+.++
T Consensus 426 k~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~--------~l~pYLd~lm~~----~l~~L~~~~~~~v~ 492 (1075)
T KOG2171|consen 426 KK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS--------ILEPYLDGLMEK----KLLLLLQSSKPYVQ 492 (1075)
T ss_pred HH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH--------HHHHHHHHHHHH----HHHHHhcCCchhHH
Confidence 44 4455777888888764 6789999999999999877654 345566666433 67778888888888
Q ss_pred HHHHHHHH
Q 035507 662 EKSVKILE 669 (684)
Q Consensus 662 ~~a~~ii~ 669 (684)
+.+...|.
T Consensus 493 e~vvtaIa 500 (1075)
T KOG2171|consen 493 EQAVTAIA 500 (1075)
T ss_pred HHHHHHHH
Confidence 87766653
No 30
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.7e-12 Score=133.82 Aligned_cols=348 Identities=18% Similarity=0.191 Sum_probs=224.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHH-HHH---cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEE-VIE---SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS 324 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~-ii~---~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~ 324 (684)
+.+|.++++|.+.+...+.-|..+|.++...+....+. +.+ .-.+|+++++.++++ |.+|..|+.++..+.-..+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecCc
Confidence 47899999999999999999999999987654311110 000 126899999999998 9999999999988776333
Q ss_pred hhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh-cCCHHHHHHHhccCCchHHHHHHHHHHHH
Q 035507 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS-EGALIPLLAQLNEHTELSMLRIATTTLSN 403 (684)
Q Consensus 325 ~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~-~g~l~~Ll~~L~~~~~~~v~~~a~~~L~n 403 (684)
..-..-++ ..++.+..+-.+++++||.+.+.++..+....+. ..+.. .++++.++..- ++.|+++.-.||.....
T Consensus 207 qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~t-qd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 207 QALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWLA 282 (885)
T ss_pred HHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHHH
Confidence 22221111 3466666677779999999999999999866543 11111 23444444444 67788899999999999
Q ss_pred hccCCCC--CChhhhhchHHHHHHHhcCCc--------------------------------------------------
Q 035507 404 LCRGKPR--PLFDQVRPALPALAQLIHSND-------------------------------------------------- 431 (684)
Q Consensus 404 L~~~~~~--~~~~~~~~~l~~L~~lL~~~d-------------------------------------------------- 431 (684)
++..+-. .-......++|.|+.-+..++
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 9988611 112234667777665432111
Q ss_pred ------HHHHHHHHHHHHhhccCCChHHHHHHHHhc----hHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHh
Q 035507 432 ------EQVLTDACWALFGLSGDRNNDKIQAVIEAG----VCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN 501 (684)
Q Consensus 432 ------~~v~~~al~~L~~L~~~~~~~~~~~~~~~g----~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~ 501 (684)
..++.....+|.-++ .+.... ++|.|-+.|.++...+++.++.++|.++.|.-.. ++.
T Consensus 363 dD~~~dWNLRkCSAAaLDVLa---------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g---~~p 430 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLA---------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG---FVP 430 (885)
T ss_pred ccccccccHhhccHHHHHHHH---------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---ccc
Confidence 112222222222222 122222 4566666677889999999999999999876422 222
Q ss_pred c--CChHHHHHHhccCCChhHHHHHHHHHHHHhcC--ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC
Q 035507 502 H--GAVPCLLALLIHNHKNSIKKEVSWIISNIACG--NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG 577 (684)
Q Consensus 502 ~--g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~ 577 (684)
+ .++|.++.+|.+. .+-||+-+||+|+..+.. ..+ .+..+.. ++..|++.+-+++.+|++.||.|+..+-..+
T Consensus 431 ~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 431 HLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred chHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 1 3688999999998 999999999999988751 111 2222221 4556666667789999999999999998876
Q ss_pred CHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507 578 THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK 618 (684)
Q Consensus 578 ~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~ 618 (684)
..+...++.. ++..|.-.+..-..+-.....+++..+.+
T Consensus 508 ~~eLVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAd 546 (885)
T KOG2023|consen 508 GEELVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLAD 546 (885)
T ss_pred cchhHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHH
Confidence 6666665433 44444444432222222333344444443
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.45 E-value=2.8e-11 Score=141.73 Aligned_cols=278 Identities=15% Similarity=0.192 Sum_probs=220.2
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC
Q 035507 289 ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368 (684)
Q Consensus 289 ~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~ 368 (684)
+.+.++.|++.|.+++ +.+|..|+.+|..+.. .++++.|+..|.++++.||..|+.+|+.+....+.
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~- 685 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP- 685 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-
Confidence 3456789999999888 9999999999998764 35689999999999999999999999998543221
Q ss_pred chhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccC
Q 035507 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGD 448 (684)
Q Consensus 369 r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~ 448 (684)
.+.+...| +++++.++..++.+|..+.... ...+...+.++|+.++..|+.+|+.+. .
T Consensus 686 ---------~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~-~ 743 (897)
T PRK13800 686 ---------APALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVD-D 743 (897)
T ss_pred ---------hHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhccc-C
Confidence 24566667 5688999999999998875321 245678899999999999999999865 2
Q ss_pred CChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507 449 RNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII 528 (684)
Q Consensus 449 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L 528 (684)
.+.|..++.++++.+|..++.+|+.+..... ..++.|..++.++ ++.+|..|+.+|
T Consensus 744 --------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aL 799 (897)
T PRK13800 744 --------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAAL 799 (897)
T ss_pred --------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 1346778999999999999999999865332 2467888999998 999999999999
Q ss_pred HHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHH
Q 035507 529 SNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTV 608 (684)
Q Consensus 529 ~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~ 608 (684)
+++.... .+.+.+...+.+.++.+|..|+++|..+-. + ..++.|..+|+++++.|+..
T Consensus 800 g~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---~---------~a~~~L~~~L~D~~~~VR~~ 857 (897)
T PRK13800 800 AELGCPP----------DDVAAATAALRASAWQVRQGAARALAGAAA---D---------VAVPALVEALTDPHLDVRKA 857 (897)
T ss_pred HhcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhccc---c---------chHHHHHHHhcCCCHHHHHH
Confidence 9985431 123567888999999999999999987642 1 24689999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 035507 609 CLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILET 670 (684)
Q Consensus 609 al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~ 670 (684)
+..+|..+ . +.. ...+.|....++.+++|+..|...|+.
T Consensus 858 A~~aL~~~-~-~~~---------------------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 858 AVLALTRW-P-GDP---------------------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHhcc-C-CCH---------------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999885 1 110 124567777889999999999988763
No 32
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1e-10 Score=117.89 Aligned_cols=359 Identities=17% Similarity=0.187 Sum_probs=269.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
..+..+|+.|..++.++......-|.+ +|--.++...+.+.|++..|++++...+ ++++...+..+.|++. +...+.
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkK-LSIf~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~ 380 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKK-LSIFDENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRP 380 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHH-hhhhccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccH
Confidence 367889999998887777766666666 4544578889999999999999999888 9999999999999998 778899
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
.+++.|.+|.+..++.+... ...|+..|..++.+.. .+.++.....++.++..+..+.+..+-...+...-|+|-+.
T Consensus 381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 99999999999999988543 2347778888887664 47778888889999988877777777777777777899887
Q ss_pred CCCChhhhhchHHHHHHHh-cCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLI-HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWTVG 486 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~ 486 (684)
.+.+......++..+++.- ...|+ .... .+.+++ +........+++ .+..|...++. .++.....++.+++
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~-lLmK---~vRniS-qHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla 530 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDL-LLMK---VVRNIS-QHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA 530 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccch-HHHH---HHHHhh-hccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence 6666666677777777654 34443 3333 455666 444333344444 35556666654 45667788899999
Q ss_pred HHHcCChhhHHHHHhcCChHHHHHHhccCC-ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHH
Q 035507 487 NIVMGDDFQTQCIINHGAVPCLLALLIHNH-KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIK 563 (684)
Q Consensus 487 nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~ 563 (684)
|+.-.+-+-.+.+.....+|.+-..|..+. ..++.-...-+++.++.. ......+..+++++.|+++|+.. +.+..
T Consensus 531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV 609 (791)
T KOG1222|consen 531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFV 609 (791)
T ss_pred hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence 998766556666677899999999997652 345666666666766654 24555566789999999999865 78888
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507 564 EEAAWAISNASSRGTHDQIKYLV-TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 564 ~~a~~aL~nl~~~~~~~~~~~l~-~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~ 623 (684)
....+++..+..+ ...+++++ +...-..+++++++.+.+++.++-.+|..+.....+.
T Consensus 610 ~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EW 668 (791)
T KOG1222|consen 610 VQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEW 668 (791)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHH
Confidence 8888888888873 45566665 4556678999999999999999999998888776543
No 33
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.45 E-value=5.9e-12 Score=123.26 Aligned_cols=196 Identities=21% Similarity=0.248 Sum_probs=164.6
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507 288 IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 288 i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
++++-++.|+.+|+..++|.++..|+.++++.+. .+..+..+.+.|+++.+..+|.++++.+++.|+++|.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 5667789999999987669999999999999887 889999999999999999999999999999999999999988765
Q ss_pred CchhHhhcCCHHHHHHHhccC-CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 368 CRDLVLSEGALIPLLAQLNEH-TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 368 ~r~~i~~~g~l~~Ll~~L~~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
+..+-. .+..+....... .+..++..++.+|.||+..... .......+|.++.++.+++..++..++++|.+|+
T Consensus 88 -~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 -QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred -HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 344432 356666654333 4778899999999999866422 2334668999999999999999999999999999
Q ss_pred cCCChHHHHHHHHhchHHHHHHhcCCC-CcccHhHHHHHHHHHHcC
Q 035507 447 GDRNNDKIQAVIEAGVCGRLVELLGHP-SPSVLTPALWTVGNIVMG 491 (684)
Q Consensus 447 ~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~ 491 (684)
.++.....++.+++++.++.++... ...+...++..+.|+..+
T Consensus 163 --~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 --ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred --cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 6777788899999999999999875 577888999999999654
No 34
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.41 E-value=9e-11 Score=123.31 Aligned_cols=373 Identities=14% Similarity=0.111 Sum_probs=249.5
Q ss_pred hhhccHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 035507 246 TKLEILPMMVAGVWSDD--NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGT 323 (684)
Q Consensus 246 ~~~~~l~~lv~~L~s~~--~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~ 323 (684)
.+.|.++.+..+++..| .+.+...+..+...+.++......+.+.+.++.+.++|++++...++...+.++.++.+.+
T Consensus 48 ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~ 127 (678)
T KOG1293|consen 48 IKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS 127 (678)
T ss_pred hhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence 45689999999998766 4555566677777778888889999999999999999988774578899999999999855
Q ss_pred chhHHHHHhc--CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHH
Q 035507 324 SENTKVVIEH--DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTL 401 (684)
Q Consensus 324 ~~~~~~i~~~--g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L 401 (684)
+..-.....+ .+++.+..++..+...+...-+....++++.. ..+....+.|+.+.+--++ .......+..|..++
T Consensus 128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~ 205 (678)
T KOG1293|consen 128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILL-MYLSSKLRLAALLCL 205 (678)
T ss_pred cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHH-HhhhHHHHHHHHHHh
Confidence 4443333322 34555555554244444444444445555444 3344555666655544443 555677788888888
Q ss_pred H---HhccCCCCCChhhh-----hchHH--HHHHHhcCCcHHHHHHHHHHHHhhccCCChH-------------------
Q 035507 402 S---NLCRGKPRPLFDQV-----RPALP--ALAQLIHSNDEQVLTDACWALFGLSGDRNND------------------- 452 (684)
Q Consensus 402 ~---nL~~~~~~~~~~~~-----~~~l~--~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~------------------- 452 (684)
+ ++..+++....... .++.+ .+.+++.+++...+..++.++.++. ..+..
T Consensus 206 sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~-~~s~~~d~l~~~~~~~dmgd~~i~ 284 (678)
T KOG1293|consen 206 SRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYL-RKSFNYDPLPWWFIFFDMGDSLIV 284 (678)
T ss_pred hccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHH-hccccccccccceeeccCchHHHH
Confidence 8 66666543332221 44444 3445555666555566666655544 22200
Q ss_pred --------------------------------HHHHHHHhchHHHHHHhc------------------------------
Q 035507 453 --------------------------------KIQAVIEAGVCGRLVELL------------------------------ 470 (684)
Q Consensus 453 --------------------------------~~~~~~~~g~l~~L~~lL------------------------------ 470 (684)
......+....+.+.+++
T Consensus 285 q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~ 364 (678)
T KOG1293|consen 285 QYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYG 364 (678)
T ss_pred HHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhh
Confidence 000011111111122211
Q ss_pred ----------------------CCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507 471 ----------------------GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII 528 (684)
Q Consensus 471 ----------------------~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L 528 (684)
-..+...+.+||.++-+++..-+.....+-+..+...+++++..+ +..++..+..++
T Consensus 365 ~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai 443 (678)
T KOG1293|consen 365 LEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAI 443 (678)
T ss_pred cchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHH
Confidence 112345566666666666553332222233456789999999888 999999999999
Q ss_pred HHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHH
Q 035507 529 SNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTV 608 (684)
Q Consensus 529 ~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~ 608 (684)
.|+.-........++..|++..+..++.+.++.++..+.|+|.++.-+.+......+...-.-..+..+.+++++.|++.
T Consensus 444 ~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq 523 (678)
T KOG1293|consen 444 CNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQ 523 (678)
T ss_pred HHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHH
Confidence 99998766778889999999999999999999999999999999998776665555555555667788889999999999
Q ss_pred HHHHHHHHHhcccc
Q 035507 609 CLEGLENILKVGEA 622 (684)
Q Consensus 609 al~~L~~il~~~~~ 622 (684)
++..++|+.....+
T Consensus 524 ~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 524 CFQLLRNLTCNSRK 537 (678)
T ss_pred HHHHHHHhhcCcHH
Confidence 99999999876443
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=7e-11 Score=123.51 Aligned_cols=317 Identities=16% Similarity=0.154 Sum_probs=222.3
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhc----CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC
Q 035507 291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEH----DAVPIFVKLLASPSDDVREQAVWALGNVAADSS 366 (684)
Q Consensus 291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~----g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~ 366 (684)
.++|.|.++|.+++ ...++-|..+|..|+.++++.-+.-+.. -.+|.++++.+++++.+|..|+.++..+.-..+
T Consensus 128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 47899999999988 5889999999999999766554432211 258999999999999999999999998875543
Q ss_pred CCchhHhh-cCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 035507 367 GCRDLVLS-EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGL 445 (684)
Q Consensus 367 ~~r~~i~~-~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L 445 (684)
. ..... ...+..+..+ .++.+++++++.|.++..|....+.+......+++..+++..++.|++|...||.....+
T Consensus 207 q--al~~~iD~Fle~lFal-anD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 207 Q--ALYVHIDKFLEILFAL-ANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred H--HHHHHHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 2 11111 1223344433 378899999999999999999888888888899999999999999999999999999888
Q ss_pred ccCCChHHHHHHHHh--chHHHHHHhcCCCC-------------------------------------------------
Q 035507 446 SGDRNNDKIQAVIEA--GVCGRLVELLGHPS------------------------------------------------- 474 (684)
Q Consensus 446 ~~~~~~~~~~~~~~~--g~l~~L~~lL~~~~------------------------------------------------- 474 (684)
+ ..+ -....+... .++|.|+.-+...+
T Consensus 284 a-eqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 284 A-EQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred h-cCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 8 443 222222221 45565554432110
Q ss_pred -------cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 035507 475 -------PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547 (684)
Q Consensus 475 -------~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~ 547 (684)
..+|+.++.+|.-++.--.+ .++. -++|.|-+.|.+. +..+|+.+..+++.||.|.-...-.-. ..+
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanvf~~---elL~-~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L-peL 435 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANVFGD---ELLP-ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL-PEL 435 (885)
T ss_pred cccccccccHhhccHHHHHHHHHhhHH---HHHH-HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch-HHH
Confidence 23455444444444432221 1111 2456666667777 899999999999999987533322111 137
Q ss_pred HHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHH-HHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQI-KYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 548 l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
+|.|+.+|.++.+-||...||+|+..+.....+.. +++.. ++..|...+-+.+.+|+++++.++..+-+.+.
T Consensus 436 ip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 436 IPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred HHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999988764322212 22222 45566666667899999999999987766543
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.36 E-value=1.6e-11 Score=107.62 Aligned_cols=117 Identities=32% Similarity=0.537 Sum_probs=110.2
Q ss_pred HHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCCh
Q 035507 457 VIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR 536 (684)
Q Consensus 457 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 536 (684)
+.+.|+++.+++++.++++.++..|++++++++.+.+.....+++.|+++.+.+++.++ ++.++..|+|+|+|++.+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56789999999999999999999999999999999888888899999999999999998 99999999999999999887
Q ss_pred HHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507 537 EQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS 574 (684)
Q Consensus 537 ~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~ 574 (684)
.....+.+.|+++.+++.+...+.++++.|+|++.+++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888889999999999999999999999999999986
No 37
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.36 E-value=1e-11 Score=108.82 Aligned_cols=119 Identities=35% Similarity=0.596 Sum_probs=109.7
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC
Q 035507 286 EVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADS 365 (684)
Q Consensus 286 ~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~ 365 (684)
.+++.|+++.+++++.+++ +.++..|+++|.+++.++++....+++.|+++.++.+|.++++.++..|+|+|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4678899999999999888 899999999999999988999999999999999999999999999999999999999988
Q ss_pred CCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507 366 SGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR 406 (684)
Q Consensus 366 ~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~ 406 (684)
+..+..+...|+++.++..+ ...+..+++.++|+|.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77777788899999999999 56688999999999999874
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.33 E-value=1.7e-10 Score=128.95 Aligned_cols=356 Identities=17% Similarity=0.242 Sum_probs=223.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.+..+.+.+.++|+.++-.|++++.++... .+++ .+++.+.+++.+++ +.+|..|+.++..+...+++...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~------~~~~-~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~- 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP------EMAE-PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE- 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH------HHHH-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH-
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc------chhh-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH-
Confidence 566677777778888888888888776521 2222 25677777887777 78888888888888775444322
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc---cCCchHHHHHHHHHHHHhcc
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN---EHTELSMLRIATTTLSNLCR 406 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~ 406 (684)
.. .++.+..+|.++++.++..|+.++..+ ...+. ... ..++.++..+. ...++-.+..++.++..++.
T Consensus 151 --~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~----~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 151 --DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD----SYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp --GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH----HHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred --HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc----hhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 11 477777888777888888888888887 11111 000 23444444443 55677777777777776665
Q ss_pred CCCCCChhhh--hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHH
Q 035507 407 GKPRPLFDQV--RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT 484 (684)
Q Consensus 407 ~~~~~~~~~~--~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 484 (684)
..+ ... ..+++.+..++.+.++.+...++.++.++. . ... .-..+++.+..++.++++.++..++.+
T Consensus 222 ~~~----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~-~-~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~ 290 (526)
T PF01602_consen 222 MEP----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLS-P-SPE-----LLQKAINPLIKLLSSSDPNVRYIALDS 290 (526)
T ss_dssp SSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S-SHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred CCh----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhh-c-chH-----HHHhhHHHHHHHhhcccchhehhHHHH
Confidence 431 122 457777777777888888888888888877 3 222 233567788888888888888888888
Q ss_pred HHHHHcCChhhHHHHHhcCChHHHHHHhc-cCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc-cCCHhH
Q 035507 485 VGNIVMGDDFQTQCIINHGAVPCLLALLI-HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ-NAEFDI 562 (684)
Q Consensus 485 L~nl~~~~~~~~~~~i~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~-~~~~~v 562 (684)
+..++...+.. +. .....+..+. ++ +..+|..+...+..++.. .+... +++.|...+. ..+.++
T Consensus 291 L~~l~~~~~~~----v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~~--~n~~~-----Il~eL~~~l~~~~d~~~ 356 (526)
T PF01602_consen 291 LSQLAQSNPPA----VF--NQSLILFFLLYDD-DPSIRKKALDLLYKLANE--SNVKE-----ILDELLKYLSELSDPDF 356 (526)
T ss_dssp HHHHCCHCHHH----HG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH--H--HHHHH-----HHHHHHHHHHHC--HHH
T ss_pred HHHhhcccchh----hh--hhhhhhheecCCC-ChhHHHHHHHHHhhcccc--cchhh-----HHHHHHHHHHhccchhh
Confidence 88887766221 11 1222233444 55 788888888888888752 33332 5667777774 447788
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHH
Q 035507 563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEE 642 (684)
Q Consensus 563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~ 642 (684)
+..++.+++.++....+... -+++.+.+++...+..+...+...+.+++...+... ...
T Consensus 357 ~~~~i~~I~~la~~~~~~~~------~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~------------~~~--- 415 (526)
T PF01602_consen 357 RRELIKAIGDLAEKFPPDAE------WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR------------EKI--- 415 (526)
T ss_dssp HHHHHHHHHHHHHHHGSSHH------HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH------------HHH---
T ss_pred hhhHHHHHHHHHhccCchHH------HHHHHHHHhhhhccccccchHHHHHHHHhhcChhhh------------HHH---
Confidence 88888888888753211111 136677777776666666666666777665533221 111
Q ss_pred hchHHHH-HHhhcCCCHHHHHHHHHHHHHhc
Q 035507 643 AEGLEKI-ENLQSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 643 ~g~~~~L-~~L~~~~~~~i~~~a~~ii~~~f 672 (684)
+..+ +.+....++++...+.+++-+|-
T Consensus 416 ---l~~L~~~l~~~~~~~~~~~~~wilGEy~ 443 (526)
T PF01602_consen 416 ---LKKLIELLEDISSPEALAAAIWILGEYG 443 (526)
T ss_dssp ---HHHHHHHHTSSSSHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHhhHHHHHHHHHhhhcccC
Confidence 2233 22344567778888888888874
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.31 E-value=4.6e-10 Score=125.50 Aligned_cols=331 Identities=18% Similarity=0.188 Sum_probs=245.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
...+.+++.+.+.|...+.-+-.++..+...+++... + +++.+.+=|.+++ +.++..|+.++++++. ++...
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~-l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~ 113 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLI-L----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAE 113 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHH-H----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHH-H----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhh
Confidence 3678899999999999999888888887665533111 1 4667777788888 9999999999999985 44333
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
. .++.+..++.++++.||..|+.++..+....|.. +... .++.+..++ .+.++.+...|+.++..+ +..
T Consensus 114 ~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~ 182 (526)
T PF01602_consen 114 P-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCN 182 (526)
T ss_dssp H-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCT
T ss_pred H-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccC
Confidence 3 4788899999999999999999999998776553 2222 477777777 778899999999999999 222
Q ss_pred CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
+..........++.+.+++...++..+..++..+..++ ......... ..+++.+..++.+.++.+...|++++..+
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~-~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA-PMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST-SSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc-cCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 11111345666677777778899999999999999998 555544422 45788888888888999999999999887
Q ss_pred HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHH
Q 035507 489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAW 568 (684)
Q Consensus 489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~ 568 (684)
....+ .-..+++.|..++.++ ++.+|..+...+..++...+.... .....+..+..+.+..++..++.
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHH
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHH
Confidence 65333 2224788999999988 999999999999999886533322 12222333334779999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHCCChHHHHhhc-cCCChHHHHHHHHHHHHHHhcccc
Q 035507 569 AISNASSRGTHDQIKYLVTEGCIKPLCDLL-QCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 569 aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL-~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
.+.+++. +..... +++.|...+ ...+++++..++..+..+......
T Consensus 327 lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 327 LLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp HHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred HHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 9999985 444444 567788888 455888999998888888776543
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.25 E-value=5.5e-09 Score=109.00 Aligned_cols=322 Identities=16% Similarity=0.219 Sum_probs=226.4
Q ss_pred CChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhh-----cCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 334 DAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLS-----EGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 334 g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~-----~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
..+..++.++.. .++++.+.++..+.-+..+.+.....+.+ .....+++.+| +..|..+...++..|+.+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 345666666655 56777778888888777766653333333 24567888877 567888889999999998876
Q ss_pred CCCCCh-hhhhchHHHHHHHhcCC-cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC--CcccHhHHHH
Q 035507 408 KPRPLF-DQVRPALPALAQLIHSN-DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP--SPSVLTPALW 483 (684)
Q Consensus 408 ~~~~~~-~~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~ 483 (684)
.+.... ......++.+...+... +...+.-++.++..+. ..+..+..+.+.++++.|+.+|+.. ...++..++.
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL--~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLL--RVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHh--CCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 533222 12223444555556543 4667777788999988 4556677788888999999999763 3477889999
Q ss_pred HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC------hHHHHHHHHhCCHHHHHHHhcc
Q 035507 484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN------REQIQAVIDAGLIGPLVNLLQN 557 (684)
Q Consensus 484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~g~l~~Li~ll~~ 557 (684)
++.-++...+ ........++++.++.++......++-+-+..++.|+...+ ......+++.|+++.+-.+...
T Consensus 210 ~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r 288 (429)
T cd00256 210 CIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQR 288 (429)
T ss_pred HHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcC
Confidence 9999987555 55556678999999999987767889999999999998732 2234556677776655555444
Q ss_pred C--CHhHHHHHHHHH-------HHhhcC---------C---------C----HHHHHHHHHCC--ChHHHHhhcc-CCCh
Q 035507 558 A--EFDIKEEAAWAI-------SNASSR---------G---------T----HDQIKYLVTEG--CIKPLCDLLQ-CADP 603 (684)
Q Consensus 558 ~--~~~v~~~a~~aL-------~nl~~~---------~---------~----~~~~~~l~~~g--~l~~L~~lL~-~~~~ 603 (684)
+ |+++.......- ..+++. | + .++...+.+.+ +++.|.++|+ +.|+
T Consensus 289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 3 666543322111 111110 0 1 23455666554 4788999984 6688
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507 604 KIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 604 ~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f 672 (684)
.+...|+.=+..+++.-+.. ...+++.|+-+.+..|..|+|++|+..|...+++..
T Consensus 369 ~~laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred ceeehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 88999999999999876543 366888999999999999999999999999998764
No 41
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.21 E-value=3.8e-09 Score=110.21 Aligned_cols=279 Identities=17% Similarity=0.162 Sum_probs=204.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
....++..|+++|.-++..|+..+..+++............-..+.+...+++++....+..|+.+|..+.. .+..|..
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~ 180 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFA 180 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHH
Confidence 456777888889999999999999999876553222111112444566666654436788889999999998 7889999
Q ss_pred HHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 330 VIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
+.+.++++.|+.+|+. .+..++.+++.+++-++-+.+ ..+.....+.++.++..+.....+.+.|.++.++.|+...
T Consensus 181 f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 181 FVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 9999999999999976 356899999999999987765 3445566789999999998888999999999999999986
Q ss_pred CC----CC--ChhhhhchHHHHHHHhcC---CcHHHHHHHHHHH-------HhhccCCCh--------------------
Q 035507 408 KP----RP--LFDQVRPALPALAQLIHS---NDEQVLTDACWAL-------FGLSGDRNN-------------------- 451 (684)
Q Consensus 408 ~~----~~--~~~~~~~~l~~L~~lL~~---~d~~v~~~al~~L-------~~L~~~~~~-------------------- 451 (684)
.. .. ....+...++.++..|.. .|+++..+.-..- ..++ .-+
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~lt--sfD~Y~~El~sg~L~WSp~H~se 337 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLS--SFDEYKSELRSGRLHWSPVHKSE 337 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHhcCCccCCCCCCCc
Confidence 41 11 112234344555555542 4666554432211 1111 111
Q ss_pred ----HHHHHHHHh--chHHHHHHhcC-CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHH
Q 035507 452 ----DKIQAVIEA--GVCGRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEV 524 (684)
Q Consensus 452 ----~~~~~~~~~--g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a 524 (684)
++...+-+. .++..|+++|. +.++.+..-||.=||.++...|..+..+-+.|+=..+++++.++ +++||++|
T Consensus 338 ~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eA 416 (429)
T cd00256 338 KFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEA 416 (429)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHH
Confidence 122233333 36788999994 56788889999999999999998888788899999999999999 99999999
Q ss_pred HHHHHHHhc
Q 035507 525 SWIISNIAC 533 (684)
Q Consensus 525 ~~~L~nl~~ 533 (684)
..++..+..
T Consensus 417 L~avQklm~ 425 (429)
T cd00256 417 LLAVQKLMV 425 (429)
T ss_pred HHHHHHHHH
Confidence 999987754
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.8e-09 Score=112.88 Aligned_cols=342 Identities=15% Similarity=0.139 Sum_probs=247.8
Q ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 250 ILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 250 ~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
.+|.|+.+|+. .+.+++..|++++..++..-++....+++.++||.|++-|..-.+-++.++++.+|-.|+. ++-.
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~H~~ 288 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR---RHPK 288 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---hccH
Confidence 67899999985 5699999999999999998888888999999999999988877778999999999999998 4457
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
++.++|++...+.+|.--+..+++.|+.+..|+|..-+ +--..+.+ ++|.|..+| +..|......++-++..++.+
T Consensus 289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHHh
Confidence 88899999999999988889999999999999995332 11233333 566777777 777888888999999888877
Q ss_pred C-CCCCh---hhhhchHHHHHHHhcCCc----HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCC-----
Q 035507 408 K-PRPLF---DQVRPALPALAQLIHSND----EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS----- 474 (684)
Q Consensus 408 ~-~~~~~---~~~~~~l~~L~~lL~~~d----~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~----- 474 (684)
. +.+.. ....+++..+.+++.-.+ ..+..-.++.+.-++ .+.+.....+...++...|..+|....
T Consensus 366 f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~ms-S~~pl~~~tl~k~~I~~~L~~il~g~s~s~na 444 (1051)
T KOG0168|consen 366 FQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMS-SGSPLLFRTLLKLDIADTLKRILQGYSKSANA 444 (1051)
T ss_pred cccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHc-cCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence 6 22222 223777778888876443 344556677788888 776777777777787777777775411
Q ss_pred ----cccH-----hH----------------------------------------------------HHHHHHHH-----
Q 035507 475 ----PSVL-----TP----------------------------------------------------ALWTVGNI----- 488 (684)
Q Consensus 475 ----~~v~-----~~----------------------------------------------------al~~L~nl----- 488 (684)
.-.+ .. -.+.+..+
T Consensus 445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~ 524 (1051)
T KOG0168|consen 445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG 524 (1051)
T ss_pred ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence 0000 00 00111100
Q ss_pred --------Hc---------CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhC-CHH
Q 035507 489 --------VM---------GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAG-LIG 549 (684)
Q Consensus 489 --------~~---------~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g-~l~ 549 (684)
-. ..++..+.++. .++|.|+++..+..++.||..+..+|..+.. .+.+-+..++... +-.
T Consensus 525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS 603 (1051)
T KOG0168|consen 525 TSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSS 603 (1051)
T ss_pred cchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHH
Confidence 00 00111111111 3688999999877799999999999999876 5677777777554 445
Q ss_pred HHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 035507 550 PLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599 (684)
Q Consensus 550 ~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~ 599 (684)
.+-.++...+..+..-|+...--++..-..-+...+.+.|++..+.++..
T Consensus 604 ~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 604 HLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 66667888888887777777766666555556778889999988888876
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=99.19 E-value=8.9e-08 Score=107.68 Aligned_cols=261 Identities=14% Similarity=0.064 Sum_probs=186.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
...+.+++.+.++|.+++.-....+.+.+...++..- -+++.|.+=+.+++ |.+|..|+++|+.|.. ++...
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e 139 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE 139 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence 3678889999999999998888888887654432211 14677788888887 9999999999988776 22222
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
-.++.+.+.+.+.++-||..|+.++.++....++ .+...+.++.|..++ .+.++.+..+|+.+|..++...
T Consensus 140 -----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 140 -----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence 2356677888899999999999999999876654 344566778888876 7889999999999999998765
Q ss_pred CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
+. ........+..++..+..-++..+..++.+|.... ..+.... ..++..+...|++.++.|...|++++.++
T Consensus 211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~-P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQR-PSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC-CCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 43 24444566666777777778888888888887654 2222211 25678888999999999999999999988
Q ss_pred HcCC-hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCCh
Q 035507 489 VMGD-DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR 536 (684)
Q Consensus 489 ~~~~-~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 536 (684)
.... +...+.+. ..+-+.++.++ ++ ++++|..+...+.-++...+
T Consensus 284 ~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 284 ASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred cCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCH
Confidence 7543 22222211 12234555554 44 56777777777666655443
No 44
>PTZ00429 beta-adaptin; Provisional
Probab=99.16 E-value=3.2e-07 Score=103.25 Aligned_cols=294 Identities=16% Similarity=0.102 Sum_probs=206.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
|-+..+.+.|++.+...+..|++.+........+.. .+.+-+++++.+++ .+++.-..-.+.+.+...++..-
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHH
Confidence 456788889999888888888876665554433222 24567778888887 89999988889999886655332
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
. ++..|.+=+.++++.+|..|+++|++|-.. +. . .-.+.++...+ .+.++-+++.|+.++..+.+..
T Consensus 105 L-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i-~-e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 105 L-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SV-L-EYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HH-H-HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence 2 367778888899999999999999998422 11 1 12345566666 7889999999999999998765
Q ss_pred CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
|. .....+.++.+..++.+.|+.|+.+|+.+|..+. ...+.... ...+.+..++..+..-++-.+...+.+|...
T Consensus 172 pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~-~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 172 MQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVN-DYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred cc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHH-HhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 42 2234567888999999999999999999999998 54433322 3345677788878766666777777777543
Q ss_pred HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHH
Q 035507 489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAA 567 (684)
Q Consensus 489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~ 567 (684)
.-.++... ..++..+...|++. ++.|.-+|+.++.+++.. +++.+..+.. .+-++++.+ .+++++++..++
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaL 318 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVC 318 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHH
Confidence 22222111 23677888888898 899999999999999764 2333333322 234566665 456788888888
Q ss_pred HHHHHhhc
Q 035507 568 WAISNASS 575 (684)
Q Consensus 568 ~aL~nl~~ 575 (684)
..+.-++.
T Consensus 319 r~I~~i~~ 326 (746)
T PTZ00429 319 KNIHALLV 326 (746)
T ss_pred HHHHHHHH
Confidence 77766654
No 45
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=3.8e-08 Score=105.25 Aligned_cols=361 Identities=15% Similarity=0.159 Sum_probs=238.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
++|-+-+.++++|+.-+..|+.++..++.+..+....-+..+++|.++.++.++. --++..++|+|+.++.+.++....
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhccc
Confidence 3455555788999999999999999999887766666677889999999999776 688899999999999977654432
Q ss_pred HH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC-----chhHhhcCCHHHHHHHhccC------CchHHHHHH
Q 035507 330 VI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC-----RDLVLSEGALIPLLAQLNEH------TELSMLRIA 397 (684)
Q Consensus 330 i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~-----r~~i~~~g~l~~Ll~~L~~~------~~~~v~~~a 397 (684)
.. ..+.++.++.-|. ..|.+..+++|++.+++...++. ...... ...+.++.-|... .+..++..|
T Consensus 444 ~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 444 QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHH
Confidence 22 2344555555444 46889999999999998332110 001111 2345555555322 345788899
Q ss_pred HHHHHHhccCCCCCChhhhhchHHHHHHHh---------cCCc----HHHHHHHHHHHHhhccCCChHHHHHHHHhchHH
Q 035507 398 TTTLSNLCRGKPRPLFDQVRPALPALAQLI---------HSND----EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCG 464 (684)
Q Consensus 398 ~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL---------~~~d----~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~ 464 (684)
..+|..+....+......+.+....+..-| ...| .+++...|.+|..+. ......+..+.+ .++.
T Consensus 522 YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~-rk~~~~~~~~~d-~iM~ 599 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSII-RKVGSDIREVSD-QIMG 599 (859)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHH-HHccccchhHHH-HHHH
Confidence 999999999876665555555555554422 2222 456677777777766 332223333333 3667
Q ss_pred HHHHhcCC-CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 035507 465 RLVELLGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVI 543 (684)
Q Consensus 465 ~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 543 (684)
.++.++.+ .+..+.+.|+.+++.++..-..+...-+ ..+.|.|..-|+...+..|-..|...++.++..-.+.+....
T Consensus 600 lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~ 678 (859)
T KOG1241|consen 600 LFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC 678 (859)
T ss_pred HHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 78888877 5666788899999888865443333222 246788888885554778888899999999875434444443
Q ss_pred HhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCC----------hHHHHHHH
Q 035507 544 DAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ-CAD----------PKIVTVCL 610 (684)
Q Consensus 544 ~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~-~~~----------~~v~~~al 610 (684)
+ +++..|++.|+++ +..+|-....+++.++..-..++.+|+-. ++..+.+.-. ..+ .+++..++
T Consensus 679 d-~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~--vm~llq~as~~~~d~~~~~~~dYvd~LRe~~l 755 (859)
T KOG1241|consen 679 D-ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEM--VMPLLQQASSVQTDPADDSMVDYVDELREGIL 755 (859)
T ss_pred H-HHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHhccCCCCcccHHHHHHHHHHHHH
Confidence 3 5888999999887 67788888889998887655666666432 2222222211 111 24677777
Q ss_pred HHHHHHHhc
Q 035507 611 EGLENILKV 619 (684)
Q Consensus 611 ~~L~~il~~ 619 (684)
++..-|+..
T Consensus 756 eay~gi~qg 764 (859)
T KOG1241|consen 756 EAYTGIIQG 764 (859)
T ss_pred HHHHHHHHH
Confidence 777766654
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=8e-08 Score=102.83 Aligned_cols=360 Identities=12% Similarity=0.074 Sum_probs=227.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507 253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE 332 (684)
Q Consensus 253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~ 332 (684)
.+.+.|.+..+...-.|++++..++..+-|+-. -.++++.|+.....+....++..++.+++.+|.+-......-..
T Consensus 94 ~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~---wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~s 170 (859)
T KOG1241|consen 94 NILRTLGSPEPRRPSSAAQCVAAIACIELPQNQ---WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQS 170 (859)
T ss_pred HHHHHcCCCCCCccchHHHHHHHHHHhhCchhh---CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 344556666666666777777777765432211 13456666666666653469999999999999843222111122
Q ss_pred cCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCC-CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507 333 HDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSS-GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 333 ~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~-~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
..++..++.-+.. ++..+|-.|..+|.|--.-.. ++... .+.+.+-..+--.-+++|.+++..|..+|..+..-..
T Consensus 171 N~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E-~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 171 NDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE-MERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred hHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH-hhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 3567777776655 678899999999988542111 00000 1111111111112267899999999999988765431
Q ss_pred CCChh-hhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHH---------------HHHH---HHhchHHHHHHhc
Q 035507 410 RPLFD-QVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDK---------------IQAV---IEAGVCGRLVELL 470 (684)
Q Consensus 410 ~~~~~-~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~---------------~~~~---~~~g~l~~L~~lL 470 (684)
..... .....++.-...+.+++++|...+..--+++| +...+. ...+ .-.+++|.|+++|
T Consensus 250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWstic-eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L 328 (859)
T KOG1241|consen 250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTIC-EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELL 328 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHH
Confidence 11111 22345555566677889999888877777776 322110 0001 1125788888888
Q ss_pred CC-------CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 035507 471 GH-------PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVI 543 (684)
Q Consensus 471 ~~-------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 543 (684)
.. +++.+...|-.||.-++....+.+ +. -++|.+-+-++++ +..-|..|+.+++.+..+.......-+
T Consensus 329 ~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I---v~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~i 403 (859)
T KOG1241|consen 329 TKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI---VP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPI 403 (859)
T ss_pred HhCCCCcccccCcHHHHHHHHHHHHHHHhcccc---hh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHH
Confidence 55 345677888888888775443221 11 3556666667778 999999999999999987555554455
Q ss_pred HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507 544 DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 544 ~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~ 623 (684)
..+.+|.++.++.++..-++..++|+++.++..............+.+..+..-|+ +.|.+..++.|++..+.+...+.
T Consensus 404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHh
Confidence 56799999999998899999999999999997542111111122233444444443 47889999999999999765443
No 47
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=7.3e-07 Score=95.87 Aligned_cols=326 Identities=15% Similarity=0.168 Sum_probs=236.9
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCC--
Q 035507 291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSS-- 366 (684)
Q Consensus 291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~-- 366 (684)
.-|+.|+.-+.+..-.+-|..|+.+|..++. .+|..+...| +++|++.|+. .++++...++.++.++..+..
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 3577888877776557889999999999997 6777777665 8999999987 578999999999999985542
Q ss_pred ----CCc----------h-hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCCh---hhhhchHHHHHHHhc
Q 035507 367 ----GCR----------D-LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLF---DQVRPALPALAQLIH 428 (684)
Q Consensus 367 ----~~r----------~-~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~---~~~~~~l~~L~~lL~ 428 (684)
..+ + .+...+.+..++..+ ...|-.++..++..++++.+..|.... ...+.++..++.+|.
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 111 1 123445677777777 677889999999999999888754332 233788999999999
Q ss_pred CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC----CcccHhHHHHHHHHHHcCChhhHHHHHhcCC
Q 035507 429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP----SPSVLTPALWTVGNIVMGDDFQTQCIINHGA 504 (684)
Q Consensus 429 ~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~----~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~ 504 (684)
+..+.++.+++..|..++ ..+....+.+.-.+++.+|+.++... ..-|...|+..+.|+...+......+.+.+.
T Consensus 177 DsrE~IRNe~iLlL~eL~-k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELV-KDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhchhHHHHHHHHH-ccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 999999999999999999 66655555556668999999999652 3467889999999999988888888889999
Q ss_pred hHHHHHHhccCC--C-----hhHH-----HHHHHHHHHHhc-CC----hHHH-HHHHHhCCHHHHHHHhccC--CHhHHH
Q 035507 505 VPCLLALLIHNH--K-----NSIK-----KEVSWIISNIAC-GN----REQI-QAVIDAGLIGPLVNLLQNA--EFDIKE 564 (684)
Q Consensus 505 l~~L~~lL~~~~--~-----~~v~-----~~a~~~L~nl~~-~~----~~~~-~~l~~~g~l~~Li~ll~~~--~~~v~~ 564 (684)
+|.|.++|.-.. + +.-+ ..|..++.-+.. ++ ..+. ..+...+++..|+.++.+. ..+++.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 999998884321 2 1112 234455555544 22 2233 3456788999999998776 678999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHCC----------ChHHHHhhccC-CChHHHHHHHHHHHHHHhccccc
Q 035507 565 EAAWAISNASSRGTHDQIKYLVTEG----------CIKPLCDLLQC-ADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 565 ~a~~aL~nl~~~~~~~~~~~l~~~g----------~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~~~ 623 (684)
++..++++++.+. ......+.+.. ++--+..+..+ ..+..+..++.++..++..+...
T Consensus 336 esiitvAevVRgn-~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 336 ESIITVAEVVRGN-ARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred HHHHHHHHHHHhc-hHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 9999999999854 33334444311 12223333333 45668888888888887765543
No 48
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.5e-07 Score=93.67 Aligned_cols=190 Identities=19% Similarity=0.212 Sum_probs=161.7
Q ss_pred CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHH
Q 035507 429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 508 (684)
Q Consensus 429 ~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L 508 (684)
+.+.+-+..|+.-|.+++ .+-++...++..|++..++..+.+.+..+|..|+++|+..+..++.....+++.|+++.|
T Consensus 94 s~~le~ke~ald~Le~lv--e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV--EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHH--HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 456788899999999998 455677788899999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc--CCHhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 035507 509 LALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN--AEFDIKEEAAWAISNASSRGTHDQIKYLV 586 (684)
Q Consensus 509 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 586 (684)
+..+.+..+..+|..|.++++.+....+.....+...+....|..++++ .+..++..|+..+..++... ......+.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~ 250 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIAS 250 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHH
Confidence 9999877567888999999999999988888889988889999999998 57888899999999998743 33334555
Q ss_pred HCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 587 TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 587 ~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
..+....+..+....+.++...++.++-..+..-.
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 67777778888888888888888887777665443
No 49
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.95 E-value=5.6e-08 Score=97.76 Aligned_cols=276 Identities=16% Similarity=0.142 Sum_probs=203.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcH---HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPI---EEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~---~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
...++..+..+|.-+...+.+.+.++++..+... +.-+. ...+-..++++.+++-..-|++||..+.. -++.|
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR 191 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYR 191 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchh
Confidence 4678888899998888888899999887765222 22222 23344455553335677788999999998 78899
Q ss_pred HHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 035507 328 KVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLC 405 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~ 405 (684)
..++..+++..++..+.+ .+..++.+.+.+++-++-.++.+ +.+...+.++.|...+..+..+.+.+-++.++.|++
T Consensus 192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll 270 (442)
T KOG2759|consen 192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL 270 (442)
T ss_pred heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998843 57889999999999998777654 556778889999999988889999999999999999
Q ss_pred cCCCCCCh------hhhhchHHHHHHHhc---CCcHHHHHHHHHHHHhhccC------CCh-------------------
Q 035507 406 RGKPRPLF------DQVRPALPALAQLIH---SNDEQVLTDACWALFGLSGD------RNN------------------- 451 (684)
Q Consensus 406 ~~~~~~~~------~~~~~~l~~L~~lL~---~~d~~v~~~al~~L~~L~~~------~~~------------------- 451 (684)
...+.... ..+..-++..++.|. -+|+++..+.-..-..|- . ..+
T Consensus 271 ~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~-~svq~LsSFDeY~sEl~sG~L~WSP~Hk~ 349 (442)
T KOG2759|consen 271 DKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK-NSVQDLSSFDEYKSELRSGRLEWSPVHKS 349 (442)
T ss_pred ccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHhhccHHHHHHHHHhCCcCCCccccc
Confidence 88743322 223444455555554 246665544333222211 0 011
Q ss_pred -----HHHHHHHHh--chHHHHHHhcCCCC-cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHH
Q 035507 452 -----DKIQAVIEA--GVCGRLVELLGHPS-PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKE 523 (684)
Q Consensus 452 -----~~~~~~~~~--g~l~~L~~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~ 523 (684)
++...+.+. .++..|+++|...+ |.+..-||.=||...+..|.....+.+.|+=..++.++.++ +++||.+
T Consensus 350 e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ 428 (442)
T KOG2759|consen 350 EKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYH 428 (442)
T ss_pred cchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHH
Confidence 112222222 37888999997754 88889999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhc
Q 035507 524 VSWIISNIAC 533 (684)
Q Consensus 524 a~~~L~nl~~ 533 (684)
|..++-.+..
T Consensus 429 ALlavQ~lm~ 438 (442)
T KOG2759|consen 429 ALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHh
Confidence 9998877654
No 50
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.2e-06 Score=94.38 Aligned_cols=328 Identities=17% Similarity=0.178 Sum_probs=237.2
Q ss_pred chhhhccHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhc
Q 035507 244 LHTKLEILPMMVAGVWSDD-NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRE-DYPQLQFQAAWALTNIAS 321 (684)
Q Consensus 244 ~~~~~~~l~~lv~~L~s~~-~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~ 321 (684)
+....+.++.++..+.+.. .+-|..|+++|..++.. . +..+.+.+++.|++.|..+ .++++...|+..+.++..
T Consensus 17 ~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srk---Y-R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 17 QQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---Y-REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred cccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---H-HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 3334568899999888665 68899999999876543 3 3445566788899999764 358999999999999988
Q ss_pred CCc------hhH----------HHHH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC-CCCchhHhhc-CCHHHHH
Q 035507 322 GTS------ENT----------KVVI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADS-SGCRDLVLSE-GALIPLL 382 (684)
Q Consensus 322 ~~~------~~~----------~~i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~-g~l~~Ll 382 (684)
.++ +.+ +.++ ..+.|..++..+...+-.||..++..+.++-... ++.++.+... -++..++
T Consensus 93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 542 111 2233 4578999999999999999999999999987554 4566666543 4688899
Q ss_pred HHhccCCchHHHHHHHHHHHHhccCCCCCChh-hhhchHHHHHHHhcCC---c-HHHHHHHHHHHHhhccCCChHHHHHH
Q 035507 383 AQLNEHTELSMLRIATTTLSNLCRGKPRPLFD-QVRPALPALAQLIHSN---D-EQVLTDACWALFGLSGDRNNDKIQAV 457 (684)
Q Consensus 383 ~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~-~~~~~l~~L~~lL~~~---d-~~v~~~al~~L~~L~~~~~~~~~~~~ 457 (684)
..| .+.-..++..++..|+.+.++.+..... ....++..|..++..+ | .-|..+++..+.|+. ..+..+.+.+
T Consensus 173 dlL-~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL-K~N~SNQ~~F 250 (970)
T KOG0946|consen 173 DLL-RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL-KNNISNQNFF 250 (970)
T ss_pred HHH-hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH-hhCcchhhHH
Confidence 999 6666778888999999999987554443 3488889999988743 3 357888999999999 8888899999
Q ss_pred HHhchHHHHHHhcCCC---C-----ccc-----HhHHHHHHHHHHcCC-----hhhH-HHHHhcCChHHHHHHhccC-CC
Q 035507 458 IEAGVCGRLVELLGHP---S-----PSV-----LTPALWTVGNIVMGD-----DFQT-QCIINHGAVPCLLALLIHN-HK 517 (684)
Q Consensus 458 ~~~g~l~~L~~lL~~~---~-----~~v-----~~~al~~L~nl~~~~-----~~~~-~~~i~~g~l~~L~~lL~~~-~~ 517 (684)
.+.+.+|+|.++|... + +.. ...|+.++..++.-. ..+. +.+..++++..|..++.++ -.
T Consensus 251 rE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp 330 (970)
T KOG0946|consen 251 REGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVP 330 (970)
T ss_pred hccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCc
Confidence 9999999999888542 2 111 234556666655321 1122 4566788999999998776 36
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHhCC----------HHHHHHHhccC-CHhHHHHHHHHHHHhhcCC
Q 035507 518 NSIKKEVSWIISNIACGNREQIQAVIDAGL----------IGPLVNLLQNA-EFDIKEEAAWAISNASSRG 577 (684)
Q Consensus 518 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~----------l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~ 577 (684)
.+|+.++.-+++++.+++...-..+.+..+ +-.++.+.... .+..|..+.+++..+....
T Consensus 331 ~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 331 ADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 789999999999999988766666654221 11223333333 6788888888888887643
No 51
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.92 E-value=5.2e-08 Score=100.41 Aligned_cols=228 Identities=21% Similarity=0.266 Sum_probs=163.8
Q ss_pred hHHHHHhcC--CCChHHHHHHHHHHHHhhCCCCCCchhHhh------cCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 336 VPIFVKLLA--SPSDDVREQAVWALGNVAADSSGCRDLVLS------EGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 336 i~~Li~lL~--~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~------~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
...++.+|+ ++++++.+.++..+..+..+.+...+.+.. .....+++.++ +.+|..+...++..|..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 455555554 368899999999999999998876666554 23578888866 667999999999999999988
Q ss_pred CCCCChhhhhchHHHHHHHhc----CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc-----CC--CCcc
Q 035507 408 KPRPLFDQVRPALPALAQLIH----SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL-----GH--PSPS 476 (684)
Q Consensus 408 ~~~~~~~~~~~~l~~L~~lL~----~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL-----~~--~~~~ 476 (684)
.+........+.++.+++.+. +++.+.+.-++.++.++. ..+..+..+.+.++++.+..++ .+ ....
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL--~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL--RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH--TSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh--CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 766555544566666666665 456777899999999999 6778888899999999999999 22 3456
Q ss_pred cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChH-HHHHHHHhCCHHHHHHHh
Q 035507 477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE-QIQAVIDAGLIGPLVNLL 555 (684)
Q Consensus 477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~g~l~~Li~ll 555 (684)
++..++.++.-++. ++.....+.+.++++.|..++......++.+-+..++.|+....+. ....++..|+++.+-.+.
T Consensus 214 l~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 214 LQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 78899999998876 4457777888899999999998776889999999999999985443 777788888877777766
Q ss_pred ccC--CHhHHHHHH
Q 035507 556 QNA--EFDIKEEAA 567 (684)
Q Consensus 556 ~~~--~~~v~~~a~ 567 (684)
... |+++....-
T Consensus 293 ~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 293 ERKWSDEDLTEDLE 306 (312)
T ss_dssp SS--SSHHHHHHHH
T ss_pred cCCCCCHHHHHHHH
Confidence 554 777665433
No 52
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=4e-06 Score=89.50 Aligned_cols=219 Identities=16% Similarity=0.157 Sum_probs=169.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
..+.++.+|++.-+-++..|+..+.++.-..++..+ ..+|+|++-|.+++ |.|+..|+.+++.+|..+|.+.-.
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc
Confidence 467889999999999999999999998776654333 36799999999999 999999999999999988875543
Q ss_pred HHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH--Hhcc
Q 035507 330 VIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS--NLCR 406 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~--nL~~ 406 (684)
.-|.+..+|.. .+.=+.-..+..+++|+--.|..... .+++|..++.+..-..+...++-++. +++.
T Consensus 219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred -----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 35778888765 34335557888899998777764443 57899999966666666666665554 3333
Q ss_pred CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHH
Q 035507 407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVG 486 (684)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 486 (684)
+ .......+.-+++.|--++.+.|+..+.-++-+++.+. ...+...+.. -..++.+|.+.++.+|..|+..+.
T Consensus 289 g-~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~-ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 289 G-MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKIL-KTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred C-CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHh-hhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHH
Confidence 3 23455666788888999999999999999999999999 5555544422 357889999999999999999998
Q ss_pred HHHcC
Q 035507 487 NIVMG 491 (684)
Q Consensus 487 nl~~~ 491 (684)
-++..
T Consensus 362 gmVsk 366 (877)
T KOG1059|consen 362 GMVSK 366 (877)
T ss_pred HHhhh
Confidence 88753
No 53
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.1e-07 Score=94.58 Aligned_cols=186 Identities=23% Similarity=0.210 Sum_probs=154.8
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHH
Q 035507 259 WSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPI 338 (684)
Q Consensus 259 ~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~ 338 (684)
.+.+.+.+..|+..|..++..- ++...++..|++..++.++++++ +.+|..|+|+++.++..+|.....+++.|+++.
T Consensus 93 ~s~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 4567888999999998876543 57788899999999999999988 899999999999999999999999999999999
Q ss_pred HHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC-CchHHHHHHHHHHHHhccCCCCC-Chhh
Q 035507 339 FVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH-TELSMLRIATTTLSNLCRGKPRP-LFDQ 415 (684)
Q Consensus 339 Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~-~~~~v~~~a~~~L~nL~~~~~~~-~~~~ 415 (684)
|+..+.+ ++..++..|+.|++.+.+..+...+.+...++...|...+... .+..+++.++..+..+....... ....
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999987 5567889999999999999988888888888899999999643 67888999999999999887333 3333
Q ss_pred hhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 416 VRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 416 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
..+....+..+....+.++...++.++..+.
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 3444445666677778888888887776655
No 54
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.87 E-value=1.9e-06 Score=86.93 Aligned_cols=325 Identities=14% Similarity=0.136 Sum_probs=220.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh------cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE------HDAVPIFVKLLASPSDDVREQAVWALGNVAADS 365 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~------~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~ 365 (684)
.+..++.++++...++....++..+..+.+.+......+-. .-.-..++.+|...+.-+.+.+.++++.++...
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 45566777766544555555555555555533322222211 123677888999999999999999999998655
Q ss_pred CCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc--CCcHHHHHHHHHHHH
Q 035507 366 SGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH--SNDEQVLTDACWALF 443 (684)
Q Consensus 366 ~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L~ 443 (684)
+.......-.-....|-..++++.+......++.+|..+.+.++-+.......++..++..+. ..+-.++...+.+++
T Consensus 146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciW 225 (442)
T KOG2759|consen 146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIW 225 (442)
T ss_pred cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHH
Confidence 431111000001233444454556777788899999999998755555555667777777663 456788999999999
Q ss_pred hhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHHHHHHHcCCh------hhHHHHHhcCChHHHHHHhccCC
Q 035507 444 GLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWTVGNIVMGDD------FQTQCIINHGAVPCLLALLIHNH 516 (684)
Q Consensus 444 ~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~------~~~~~~i~~g~l~~L~~lL~~~~ 516 (684)
-|+ .++..++.+...+.++.|..++++ ..++|..-.+.++.|+....+ +....++..++.+.+-.+.....
T Consensus 226 lLt--Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky 303 (442)
T KOG2759|consen 226 LLT--FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY 303 (442)
T ss_pred Hhh--cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence 998 555666777777999999999976 467888889999999987763 34455667677666655553321
Q ss_pred -ChhHHHHHHHHHHHHh-------c----------C----C---------hHHHHHHHHh--CCHHHHHHHhccC-CHhH
Q 035507 517 -KNSIKKEVSWIISNIA-------C----------G----N---------REQIQAVIDA--GLIGPLVNLLQNA-EFDI 562 (684)
Q Consensus 517 -~~~v~~~a~~~L~nl~-------~----------~----~---------~~~~~~l~~~--g~l~~Li~ll~~~-~~~v 562 (684)
|+++....-..-.-+. . | + .+++..+-+. .++..|+++|+.. |+.+
T Consensus 304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i 383 (442)
T KOG2759|consen 304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII 383 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence 4444433322222111 0 0 1 1223333332 3689999999877 5888
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
-..||.-++..+.. .|+....+.+.|+=+.+.++++++||+|+..|+.++..++..
T Consensus 384 L~VAc~DIge~Vr~-yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 384 LCVACHDIGEYVRH-YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred eehhhhhHHHHHHh-CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 88999999999984 577778888999999999999999999999999999988754
No 55
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=7e-07 Score=92.67 Aligned_cols=389 Identities=14% Similarity=0.121 Sum_probs=235.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccchhhhccHHHHHH-HhcCCCHHHHHHHHHHHHHHhc
Q 035507 200 SAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVA-GVWSDDNNLQLEATTQFQKLLS 278 (684)
Q Consensus 200 ~~~~~~~~~~~~~r~~~r~~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~-~L~s~~~~~~~~a~~~L~~l~s 278 (684)
+..++|..+..++-|..|+..++-- ..+.. ..+..+.. ...+.+...+..++..+...+-
T Consensus 12 KlYekRKaaalelEk~Vk~l~~~~~----------------~~~i~---k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~i 72 (675)
T KOG0212|consen 12 KLYEKRKAAALELEKLVKDLVNNND----------------YDQIR---KVISELAGDYAYSPHANMRKGGLIGLAAVAI 72 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCc----------------HHHHH---HHHHHHHHHhccCcccccccchHHHHHHHHH
Confidence 4456777888888887666332100 00111 12332222 3345554444455554444322
Q ss_pred CCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHH
Q 035507 279 IESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWAL 358 (684)
Q Consensus 279 ~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L 358 (684)
.-. +.+.-.-.+++|+.+..+.+++ ..+|..|+..|.|++.. ........-..+...+.++..+++..++ .++..+
T Consensus 73 aLg-~~~~~Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLL 148 (675)
T KOG0212|consen 73 ALG-IKDAGYLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELL 148 (675)
T ss_pred Hhc-cccHHHHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccc-cHHHHH
Confidence 111 1111255678999999999888 79999999999999982 1111112223445666666666666665 455556
Q ss_pred HHhhCCCCCCchhHhhcCCHHHHHHHhc---cCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHH
Q 035507 359 GNVAADSSGCRDLVLSEGALIPLLAQLN---EHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVL 435 (684)
Q Consensus 359 ~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~ 435 (684)
-.+..+-..-++.-. -++.++.+|. ...++..+...+.-|..+-..++..-......+++-|..+|.++.++|+
T Consensus 149 dRLikdIVte~~~tF---sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr 225 (675)
T KOG0212|consen 149 DRLIKDIVTESASTF---SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVR 225 (675)
T ss_pred HHHHHHhcccccccc---CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHH
Confidence 665543322222111 2344444442 4457777877777777766554444445568889999999999999998
Q ss_pred HHHHHHHHhhcc--CCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc
Q 035507 436 TDACWALFGLSG--DRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI 513 (684)
Q Consensus 436 ~~al~~L~~L~~--~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~ 513 (684)
.-+=.+++.+.. ++++... --...++.++.-+.++++.++..|+..|..+..-.+... ...-+|++..++.++.
T Consensus 226 ~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s 301 (675)
T KOG0212|consen 226 TLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLS 301 (675)
T ss_pred HHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCC
Confidence 665555544430 1111111 112467889999999999999999999988886555332 2334577778888887
Q ss_pred cCCCh-hHHHHHHHHHHHHhc--CChHHHHHHHH-hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCC
Q 035507 514 HNHKN-SIKKEVSWIISNIAC--GNREQIQAVID-AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEG 589 (684)
Q Consensus 514 ~~~~~-~v~~~a~~~L~nl~~--~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g 589 (684)
+. +. .++..|..+-..+.. +.+...+. ++ ..++..+...+.+...+.|-.+..-+..+......+... ....
T Consensus 302 ~~-e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~ 377 (675)
T KOG0212|consen 302 DT-EEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDS 377 (675)
T ss_pred CC-ccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccH
Confidence 76 44 344443332212221 11111111 33 236888889999999999999986666666533222222 2456
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
+...|..-|.+.+.+++..++..+..++...+.
T Consensus 378 if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 378 IFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 788888899999999999999999999987654
No 56
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.79 E-value=1.8e-06 Score=92.13 Aligned_cols=269 Identities=18% Similarity=0.202 Sum_probs=178.2
Q ss_pred hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc--hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCC
Q 035507 336 VPIFVKLLASPSDDVREQAVWALGNVAADSSGCR--DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPL 412 (684)
Q Consensus 336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r--~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~ 412 (684)
+...+..|+++++.+|++|+..++.++..-..|. +.+...|. .|...| ...+++++-..+.++..++... -...
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHHHhcccccc
Confidence 4556667889999999999999999984332221 12223332 234445 6677888877777666665443 2223
Q ss_pred hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC-
Q 035507 413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG- 491 (684)
Q Consensus 413 ~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~- 491 (684)
..-+.+++|.|..+|.+..+.++++++..++.++ +..++....--=..+.=-|+.+|...+..+|..|..++|.++..
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~Ia-drgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIA-DRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHH-hcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 3345789999999999999999999999999999 77665432211112334467777788889999999999988743
Q ss_pred -ChhhHHHHHh-----------------------cC---ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChH-HHHHHH
Q 035507 492 -DDFQTQCIIN-----------------------HG---AVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE-QIQAVI 543 (684)
Q Consensus 492 -~~~~~~~~i~-----------------------~g---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~ 543 (684)
..+....+++ +| ++|.|+.=...+ +..|+.-...+++.+.....+ ...++.
T Consensus 957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~FeyigemskdYiy 1035 (1172)
T KOG0213|consen 957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEMSKDYIY 1035 (1172)
T ss_pred CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHHhhhHHH
Confidence 2222222221 22 345554444555 677888888888777652212 222222
Q ss_pred HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-------CCChHHHHHHHHHHHHH
Q 035507 544 DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ-------CADPKIVTVCLEGLENI 616 (684)
Q Consensus 544 ~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~-------~~~~~v~~~al~~L~~i 616 (684)
-+.|.|-+.|.+.|..-|..|+.++.+++.+.. -.|..+.+..+|+ ...|-++....+++..+
T Consensus 1036 --av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~ 1105 (1172)
T KOG0213|consen 1036 --AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGL 1105 (1172)
T ss_pred --HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHH
Confidence 368888999999999999999999999987531 3355556666554 56777888877777766
Q ss_pred Hhc
Q 035507 617 LKV 619 (684)
Q Consensus 617 l~~ 619 (684)
-..
T Consensus 1106 r~~ 1108 (1172)
T KOG0213|consen 1106 RVA 1108 (1172)
T ss_pred HHH
Confidence 543
No 57
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.77 E-value=2.8e-07 Score=95.05 Aligned_cols=230 Identities=17% Similarity=0.220 Sum_probs=167.2
Q ss_pred HHHHHHhc--CCcHHHHHHHHHHHHhhccCCChHHHHHHHHh------chHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507 421 PALAQLIH--SNDEQVLTDACWALFGLSGDRNNDKIQAVIEA------GVCGRLVELLGHPSPSVLTPALWTVGNIVMGD 492 (684)
Q Consensus 421 ~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~------g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 492 (684)
..++.++. ..+++++..++..+..+. ...+...+.+... .....+++++.+++..+...|+++++.++...
T Consensus 58 ~~~l~lL~~~~~~~d~v~yvL~li~dll-~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 58 SLFLNLLNKLSSNDDTVQYVLTLIDDLL-SDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp ----HHHHHH---HHHHHHHHHHHHHHH-H-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHH-hcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 33444443 468899999999999998 6666666655552 25778888999999999999999999999877
Q ss_pred hhhHHHHHhcCChHHHHHHhcc----CCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh------cc-CCHh
Q 035507 493 DFQTQCIINHGAVPCLLALLIH----NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL------QN-AEFD 561 (684)
Q Consensus 493 ~~~~~~~i~~g~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll------~~-~~~~ 561 (684)
+....... .+.++.++.++.+ + +..++..|+.++.++.. .++.+..+.+.++++.+..++ .. .+..
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~-~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSS-DSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HH-HH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 65444322 3466777777654 3 55677899999999986 468888899999999999999 22 2677
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHH
Q 035507 562 IKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC-ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLV 640 (684)
Q Consensus 562 v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i 640 (684)
++.+++.++.-++- +++.+..+.+.++++.|.++++. ...+++..++.++.|++....+. +...+
T Consensus 214 l~Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~------------~~~~m 279 (312)
T PF03224_consen 214 LQYQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS------------NIELM 279 (312)
T ss_dssp HHHHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT------------HHHHH
T ss_pred HHHHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH------------HHHHH
Confidence 88899999998876 78899999999999999998874 57889999999999999876543 56778
Q ss_pred HHhchHHHHHHhhcC--CCHHHHHHHHHHH
Q 035507 641 EEAEGLEKIENLQSH--DNNEIHEKSVKIL 668 (684)
Q Consensus 641 ~~~g~~~~L~~L~~~--~~~~i~~~a~~ii 668 (684)
-.+|++..++.|+.. .++|+.+--..+-
T Consensus 280 v~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 280 VLCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred HHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 889999999999654 6888876555443
No 58
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=2.8e-06 Score=91.97 Aligned_cols=369 Identities=14% Similarity=0.147 Sum_probs=225.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
..|.+.++++..++-++..|+.++.++....+...+. +++...++|.+.+ .-|-..++..+..++..+++....
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHHH
Confidence 5677777888888888888888888877666543332 4566777777766 677777788888888766655555
Q ss_pred HHhcCChHHHHHhcCC---------------CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC------
Q 035507 330 VIEHDAVPIFVKLLAS---------------PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH------ 388 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~---------------~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~------ 388 (684)
+-+ .++.|+..|++ ++|-++...++.|.-+-.+.+...+.+. -++......
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~------DiLaqvatntdsskN 288 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMN------DILAQVATNTDSSKN 288 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHH------HHHHHHHhccccccc
Confidence 443 45555555531 3577888888888888776665444332 222222111
Q ss_pred CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHH
Q 035507 389 TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVE 468 (684)
Q Consensus 389 ~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~ 468 (684)
....+...++.++..+-... ....-++..|-++|.+.|..++.-++..|.+.. ..++...+.-. ..+++
T Consensus 289 ~GnAILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V-~~d~~avqrHr-----~tIle 357 (866)
T KOG1062|consen 289 AGNAILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVV-QQDPTAVQRHR-----STILE 357 (866)
T ss_pred chhHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhh-cCCcHHHHHHH-----HHHHH
Confidence 12356666666666554432 122345667778888888889999999998888 66555444322 46899
Q ss_pred hcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCC
Q 035507 469 LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGL 547 (684)
Q Consensus 469 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~ 547 (684)
+|++++..++..|+..+-.+...+. .+. ++..|+..|... +++.+...+..+..++. ..|+.+. .
T Consensus 358 CL~DpD~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W------~ 423 (866)
T KOG1062|consen 358 CLKDPDVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW------H 423 (866)
T ss_pred HhcCCcHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh------H
Confidence 9999999999999999988875443 332 456888999888 99999999998888886 3344333 2
Q ss_pred HHHHHHHhccCCHhHHHHHHHHHHHhhcCCC----HHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGT----HDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 548 l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~----~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~ 623 (684)
+..+.+.+...-.-++..+...+..+...+. .....++... +..-. ++....+.++.++.|+|..+-+.--..
T Consensus 424 idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a--~~~~~-~~~is~e~l~qVa~W~IGEYGdlll~~ 500 (866)
T KOG1062|consen 424 IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLA--LSEDT-LLDISQEPLLQVASWCIGEYGDLLLDG 500 (866)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHH--Hhhhh-hhhhhhhhHHHHHHHHhhhhhHHhhcC
Confidence 4556666666544444455544444444331 1112222221 11111 233455667888888887765321111
Q ss_pred ccCCCCCcchhHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHH
Q 035507 624 KNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD--NNEIHEKSVKIL 668 (684)
Q Consensus 624 ~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~--~~~i~~~a~~ii 668 (684)
. .+.-.....+...+++|++++.+. +..+...|...+
T Consensus 501 ~--------~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al 539 (866)
T KOG1062|consen 501 A--------NEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTAL 539 (866)
T ss_pred c--------cccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 0 000123444566667777664332 233444444333
No 59
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.70 E-value=3.3e-06 Score=87.75 Aligned_cols=356 Identities=14% Similarity=0.124 Sum_probs=217.3
Q ss_pred ccHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 035507 249 EILPMMVAGVWS-------DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIAS 321 (684)
Q Consensus 249 ~~l~~lv~~L~s-------~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~ 321 (684)
+.+|.++++|.. +|+..-..|..+|.-.+.... +.+.+. ++..+=+-+.+++ -.-++.|+.+++.+..
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm~ 395 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVMH 395 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh---hHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhhc
Confidence 478999999874 345666666666654433221 122221 3333334455666 4778899999999998
Q ss_pred CCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC--CchHHHHHHHH
Q 035507 322 GTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH--TELSMLRIATT 399 (684)
Q Consensus 322 ~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~--~~~~v~~~a~~ 399 (684)
+..+....-+-..++|.+...+.++..-+++.++|+++.|+.+-+ +.+...|.+.+.++.+... ..+.+..+++|
T Consensus 396 gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw 472 (858)
T COG5215 396 GPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCSW 472 (858)
T ss_pred CccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhHH
Confidence 765555555556789999999998888899999999999986542 2344445555544443222 23566779999
Q ss_pred HHHHhccCCCCCC---hhhhhchHHHHHHHhc------CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHH-----
Q 035507 400 TLSNLCRGKPRPL---FDQVRPALPALAQLIH------SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGR----- 465 (684)
Q Consensus 400 ~L~nL~~~~~~~~---~~~~~~~l~~L~~lL~------~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~----- 465 (684)
+.-|+...-+... ........+.++.-|- .++...+..+..+|+.+. ...++....+.. |+...
T Consensus 473 ~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli-~~~~d~V~~~~a-~~~~~~~~kl 550 (858)
T COG5215 473 RKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLI-LICPDAVSDILA-GFYDYTSKKL 550 (858)
T ss_pred HHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH-hhcchhHHHHHH-HHHHHHHHHH
Confidence 9999988763322 2222333333333221 345677888888888777 444433322221 22222
Q ss_pred ------HHHhcCCCC----cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC
Q 035507 466 ------LVELLGHPS----PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN 535 (684)
Q Consensus 466 ------L~~lL~~~~----~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 535 (684)
+-+.+...+ .+++..-+..|..+........+.+- ..++..++.+|++.....+-.....++++++..-
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAISALSTSL 629 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence 222222222 23445555555555543332222222 1356788888887733456667788899987754
Q ss_pred hHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--ChHHHHHHHHHH
Q 035507 536 REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA--DPKIVTVCLEGL 613 (684)
Q Consensus 536 ~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~--~~~v~~~al~~L 613 (684)
.+..... -..++|.|.+.|...+..+...|...++.++..-+.+...+ .......|++++.++ +.++.-.++..+
T Consensus 630 ~e~Fe~y-~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSvF 706 (858)
T COG5215 630 EERFEQY-ASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSVF 706 (858)
T ss_pred HHHHHHH-HhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHHH
Confidence 3443333 34589999999988899999999999999987555555444 444677888888764 344555555555
Q ss_pred HHHHh
Q 035507 614 ENILK 618 (684)
Q Consensus 614 ~~il~ 618 (684)
..|.-
T Consensus 707 gDIAl 711 (858)
T COG5215 707 GDIAL 711 (858)
T ss_pred HHHHH
Confidence 55543
No 60
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.66 E-value=9.4e-06 Score=89.15 Aligned_cols=354 Identities=14% Similarity=0.120 Sum_probs=218.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507 253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE 332 (684)
Q Consensus 253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~ 332 (684)
.+++.+.+.|.+.|+.|+.-|.+=+..+.-..+.=-+..++..++++|++.+ +++|..|+.|++-+++.-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le--- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE--- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH---
Confidence 6888899999999999998887766555433333344568899999999988 899999999999999744333322
Q ss_pred cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc----c-CCchHHHHHHHHHHHHhccC
Q 035507 333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN----E-HTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 333 ~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~----~-~~~~~v~~~a~~~L~nL~~~ 407 (684)
..+..|+.-+-++....|..+.-.|......-+..........+.+.+...+. . .....++..++..+..+...
T Consensus 85 -~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 85 -TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred -HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 22455665544555555554444444333322222222333344455554443 2 22233555555555444333
Q ss_pred CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-CcccHhHHHHHHH
Q 035507 408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-SPSVLTPALWTVG 486 (684)
Q Consensus 408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~ 486 (684)
...--......++..++.-+.+....++..++.+|+.++...+.+.. .+++..|.+-|..+ ++.....-..+|+
T Consensus 164 ~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly-----~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 164 FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY-----VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 22222224456677777778888899999999999999922232222 24555666666443 3344444556677
Q ss_pred HHHcCChhhHHHHHhcCChHHHHHHh---ccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc-------
Q 035507 487 NIVMGDDFQTQCIINHGAVPCLLALL---IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ------- 556 (684)
Q Consensus 487 nl~~~~~~~~~~~i~~g~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~------- 556 (684)
.++.........- -..++|.+.+.. +.. +.++|+.+..++..+....|..+...+. .++..+++.+.
T Consensus 239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence 7765433211111 124678888887 555 8899999999999887766555443322 13333333331
Q ss_pred ------------------------c---CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHH
Q 035507 557 ------------------------N---AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVC 609 (684)
Q Consensus 557 ------------------------~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~a 609 (684)
+ -++.||++|+.++..+... ..+....+.+. +-+.+++-++..+..|..-+
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q~-l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQT-LGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHH
Confidence 0 0356899999999999873 45655555443 56777888888888888888
Q ss_pred HHHHHHHHhccc
Q 035507 610 LEGLENILKVGE 621 (684)
Q Consensus 610 l~~L~~il~~~~ 621 (684)
..++..+++.-.
T Consensus 394 f~~yi~ll~qt~ 405 (1233)
T KOG1824|consen 394 FHAYIALLKQTR 405 (1233)
T ss_pred HHHHHHHHHcCC
Confidence 888888877543
No 61
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.65 E-value=4.1e-06 Score=87.09 Aligned_cols=361 Identities=14% Similarity=0.150 Sum_probs=214.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH-
Q 035507 252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVV- 330 (684)
Q Consensus 252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i- 330 (684)
+..++.-+++|.++|.+|..+|.++.+-.....+...+.-+.....+.+++++ +++..+|+....-++...-+.....
T Consensus 224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~ 302 (858)
T COG5215 224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDK 302 (858)
T ss_pred eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 44556667889999999999999988765544554555556666677888888 7899998888877776321111100
Q ss_pred ---------------HhcCChHHHHHhcCC---------------------------------------------CChHH
Q 035507 331 ---------------IEHDAVPIFVKLLAS---------------------------------------------PSDDV 350 (684)
Q Consensus 331 ---------------~~~g~i~~Li~lL~~---------------------------------------------~~~~v 350 (684)
.-.+++|.|+++|.. ++..-
T Consensus 303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~n 382 (858)
T COG5215 303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWAN 382 (858)
T ss_pred hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhh
Confidence 112467888888854 11223
Q ss_pred HHHHHHHHHHhhCCCCC-CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCC--CChhhhhchHHHHHHHh
Q 035507 351 REQAVWALGNVAADSSG-CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR--PLFDQVRPALPALAQLI 427 (684)
Q Consensus 351 ~~~a~~~L~nLa~~~~~-~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~--~~~~~~~~~l~~L~~lL 427 (684)
++.|+.++|.+-..+.. ++.. +-..+++.+...+ .++..-++..++|+++.++..-+. .+.....+.+.....-+
T Consensus 383 reaavmAfGSvm~gp~~~~lT~-~V~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl 460 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLTK-IVPQALPGIENEM-SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGL 460 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHHh-hHHhhhHHHHHhc-ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhh
Confidence 45555555555433221 1111 1123455555555 455667888999999999887521 11111122222222221
Q ss_pred cCCcHHHHHHHHHHHHhhccCCChHHH---HHHHHhchHHHHHHhc------CCCCcccHhHHHHHHHHHHcCChhhHHH
Q 035507 428 HSNDEQVLTDACWALFGLSGDRNNDKI---QAVIEAGVCGRLVELL------GHPSPSVLTPALWTVGNIVMGDDFQTQC 498 (684)
Q Consensus 428 ~~~d~~v~~~al~~L~~L~~~~~~~~~---~~~~~~g~l~~L~~lL------~~~~~~v~~~al~~L~nl~~~~~~~~~~ 498 (684)
.+.+.+..+++|+.-++. +.-.... ..++. .+.+.++.-| ...+...|..+..+|+.+....++....
T Consensus 461 -~D~p~~~~ncsw~~~nlv-~h~a~a~~~~~S~l~-~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~ 537 (858)
T COG5215 461 -MDCPFRSINCSWRKENLV-DHIAKAVREVESFLA-KFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSD 537 (858)
T ss_pred -hccchHHhhhHHHHHhHH-HhhhhhhccccchhH-HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHH
Confidence 356888999999999988 4322221 00111 1222222222 2345678888999999988776644333
Q ss_pred HHhcCChHHHHHH-----------hccCC---ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCH-hHH
Q 035507 499 IINHGAVPCLLAL-----------LIHNH---KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEF-DIK 563 (684)
Q Consensus 499 ~i~~g~l~~L~~l-----------L~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~-~v~ 563 (684)
++ .|+.....+- +...+ ..+++..-+.+|..+.+..+..+..+-+ .++..++++|++.++ -+-
T Consensus 538 ~~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~~t~~~ 615 (858)
T COG5215 538 IL-AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTKPTTAF 615 (858)
T ss_pred HH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccCCchhh
Confidence 32 2333332222 22220 2356666777777776543333333333 378888999988744 455
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 564 EEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 564 ~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
.....++++++..-.+.+.++ -..+++.|...|+..|..+...+...+..+...-+.
T Consensus 616 ~dV~~aIsal~~sl~e~Fe~y--~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~ 672 (858)
T COG5215 616 GDVYTAISALSTSLEERFEQY--ASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGT 672 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence 667888998887544444444 345899999999888888888888888887765443
No 62
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.8e-05 Score=83.63 Aligned_cols=330 Identities=16% Similarity=0.182 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHhcCCCCcHHH----HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 035507 265 LQLEATTQFQKLLSIESMPIEE----VIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFV 340 (684)
Q Consensus 265 ~~~~a~~~L~~l~s~~~~~~~~----ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li 340 (684)
-..-++.+|+++++..++.... ..--|..+.+..++....++.++..|+.++.-+.. +.++...++..|.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence 4556889999999887633222 22247788888888776658999999999987777 888999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC---CCCChhhhh
Q 035507 341 KLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK---PRPLFDQVR 417 (684)
Q Consensus 341 ~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~---~~~~~~~~~ 417 (684)
.+|.+ -+..|+.++..|..++....- .....+.|++..++..+-.+...+.+..++..+..+...+ |...+..+.
T Consensus 1820 ~lLHS-~PS~R~~vL~vLYAL~S~~~i-~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLHS-QPSMRARVLDVLYALSSNGQI-GKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHhc-ChHHHHHHHHHHHHHhcCcHH-HHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 99877 467889999999999877644 4556678899999988878888899999999999998776 333222222
Q ss_pred ch-----------HHHHHHHhc--CCcHHH------HHHHHHHHHhhcc-------CCC------hHH------------
Q 035507 418 PA-----------LPALAQLIH--SNDEQV------LTDACWALFGLSG-------DRN------NDK------------ 453 (684)
Q Consensus 418 ~~-----------l~~L~~lL~--~~d~~v------~~~al~~L~~L~~-------~~~------~~~------------ 453 (684)
-. -.+.++++. +++|+. +...-..+..+.. +++ +++
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence 22 233344443 222222 1111112222210 000 000
Q ss_pred ------HHHHH------------HhchHHHHHHhcCCCCcc--cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc
Q 035507 454 ------IQAVI------------EAGVCGRLVELLGHPSPS--VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI 513 (684)
Q Consensus 454 ------~~~~~------------~~g~l~~L~~lL~~~~~~--v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~ 513 (684)
+..+. -.|.++.+.+++..+.+. ....-..++..+....+...+.+-..|-+|.++..+.
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence 00111 113445555666544332 2222223444455566666666767799999999998
Q ss_pred cCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHH
Q 035507 514 HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKP 593 (684)
Q Consensus 514 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~ 593 (684)
.. +..+-+.|..+|..+++.. -....+.....+..++..+.. ......-|+.+|..+......+...+....|.++.
T Consensus 2058 ~~-n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpy 2134 (2235)
T KOG1789|consen 2058 LQ-NTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPY 2134 (2235)
T ss_pred hc-CCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHH
Confidence 77 6677789999999998753 445555555555556666543 34455688999999988666777778889999999
Q ss_pred HHhhccC
Q 035507 594 LCDLLQC 600 (684)
Q Consensus 594 L~~lL~~ 600 (684)
|..+|+.
T Consensus 2135 LL~LLd~ 2141 (2235)
T KOG1789|consen 2135 LLQLLDS 2141 (2235)
T ss_pred HHHHhcc
Confidence 9999974
No 63
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=5.5e-06 Score=89.85 Aligned_cols=305 Identities=17% Similarity=0.164 Sum_probs=184.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~ 371 (684)
+...+.+.+++.+ +-+|..|+-+..++-.. ..+.+.+.|.++.|-+++.+.++.|..+|+.+|..|....+..--.
T Consensus 122 ~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 122 LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHhccCCC-hhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 4566777777777 88888888888877763 3455667888999999998888899999999999998666531111
Q ss_pred HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh
Q 035507 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN 451 (684)
Q Consensus 372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~ 451 (684)
.+....+..++..++.. .--.-+..|-.++...|... .....++..+...+.+.+..+...+...+.++. ..-.
T Consensus 198 ~l~~~~~~~lL~al~ec----~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~-~~~~ 271 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNEC----TEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLV-KYLK 271 (734)
T ss_pred cccHHHHHHHHHHHHHh----hhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHH-HHHH
Confidence 11111223333333211 11122334455555554444 445667777888888888888888888888877 3222
Q ss_pred HHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHh--------------------------cC--
Q 035507 452 DKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN--------------------------HG-- 503 (684)
Q Consensus 452 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~--------------------------~g-- 503 (684)
. .....-..+-+.++.++.... .++..|++-+.-+....+.....-+. +.
T Consensus 272 ~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~ 349 (734)
T KOG1061|consen 272 Q-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLA 349 (734)
T ss_pred H-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHH
Confidence 2 222333345667777777766 77888888777776655432111110 01
Q ss_pred -ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHH
Q 035507 504 -AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQI 582 (684)
Q Consensus 504 -~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~ 582 (684)
++..+...-..- +.+..++|.+++++++..-.+. .++++.|++++..+..-+..+++..+..+...... ..
T Consensus 350 qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~-~~ 421 (734)
T KOG1061|consen 350 QVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN-KY 421 (734)
T ss_pred HHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC-ch
Confidence 111222222222 5666777888888876532221 46777888888777666777777777777763311 11
Q ss_pred HHHHHCCChHHHHhhccC-CChHHHHHHHHHHHHHHhccc
Q 035507 583 KYLVTEGCIKPLCDLLQC-ADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 583 ~~l~~~g~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~ 621 (684)
+. ++..++..+.+ .+|+.+....|++......-+
T Consensus 422 ~~-----vv~~l~~~~~sl~epeak~amiWilg~y~~~i~ 456 (734)
T KOG1061|consen 422 ES-----VVAILCENLDSLQEPEAKAALIWILGEYAERIE 456 (734)
T ss_pred hh-----hhhhhcccccccCChHHHHHHHHHHhhhhhccC
Confidence 11 34444444443 577777777777777665543
No 64
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.59 E-value=2.6e-06 Score=86.41 Aligned_cols=272 Identities=17% Similarity=0.164 Sum_probs=188.0
Q ss_pred HHHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHh
Q 035507 284 IEEVIESGVVPRFVEFLMREDY-PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNV 361 (684)
Q Consensus 284 ~~~ii~~g~i~~Lv~lL~~~~~-~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nL 361 (684)
.+.+...|.+..|++++..++. ..++.+|+..|-.+.. .++++.++..| +..++.+.+. ..++.++.++.+|+++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3456677899999999998872 3579999999999886 67888888877 5555554443 5678899999999999
Q ss_pred hCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC--CCChhhhhchHHHHHHHhcCCcHHHHHHHH
Q 035507 362 AADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP--RPLFDQVRPALPALAQLIHSNDEQVLTDAC 439 (684)
Q Consensus 362 a~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~al 439 (684)
..++.+....+...|++..++-.+ ...++.+.+++..+|.|++-... .........+-.-|..+-.+.|+-.+.+||
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999988778888999999988777 66779999999999999987762 222223344555566666778888999999
Q ss_pred HHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChh
Q 035507 440 WALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS 519 (684)
Q Consensus 440 ~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~ 519 (684)
-+++-++ .+.+.-..+..+|.+..+-.++...++.-... --...+.+.. ..-+..|+.+|++. .-+
T Consensus 329 lAV~vla--t~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~~--------~d~LqRLvPlLdS~-R~E 394 (832)
T KOG3678|consen 329 LAVAVLA--TNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGRG--------PDDLQRLVPLLDSN-RLE 394 (832)
T ss_pred HHHhhhh--hhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccCC--------hHHHHHhhhhhhcc-hhh
Confidence 9999998 44455555677787776666666655432111 1111122211 12477888999877 666
Q ss_pred HHHHHHHHHHHHhc-CC-hHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507 520 IKKEVSWIISNIAC-GN-REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA 573 (684)
Q Consensus 520 v~~~a~~~L~nl~~-~~-~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl 573 (684)
.+.-+++-++-=++ .. ......+-+-|.+..|-++.++.+..-.+.|..||.-+
T Consensus 395 Aq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 395 AQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 66555555544333 11 11223344678899999998877655555555665544
No 65
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.9e-05 Score=82.58 Aligned_cols=315 Identities=16% Similarity=0.118 Sum_probs=207.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~ 371 (684)
++..+.+-++.+. +.+|.....+|..+......... ..+.+.+.+++..+...-+..+.+.++.+..+... ..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence 5678888888888 89999988888776652111111 12467777888888888899999999999876643 34
Q ss_pred HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh
Q 035507 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN 451 (684)
Q Consensus 372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~ 451 (684)
..+.+.+..+...+.+..+..-++.+..+.-..+..-...........+|.++.-+.+..+.++..+..+...+...-+.
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 45666777777777433333233334333333333333333334456666666666677888888877777655511122
Q ss_pred HHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 035507 452 DKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNI 531 (684)
Q Consensus 452 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl 531 (684)
...+ -++|.++.-+....+.....++..++.++...+.+..... ..++|.+.+.|.+. ++++|+++..++.++
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 2222 2344444444444788889999999999988886665444 47999999999999 999999999999998
Q ss_pred hc--CChHHHHHHHH------------------------------hC----CHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 532 AC--GNREQIQAVID------------------------------AG----LIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 532 ~~--~~~~~~~~l~~------------------------------~g----~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
+. .+++ ++.++. .- ++|.|.+-+...+..+++.++..+.|++.
T Consensus 323 ~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 323 GSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred HHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 76 3433 333320 01 23444444445577888999999999987
Q ss_pred CC-CHHHH-HHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507 576 RG-THDQI-KYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 576 ~~-~~~~~-~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~ 623 (684)
-- ++... +++-+ +++.+-..+....|+++..+..+|..+.+.....
T Consensus 402 LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 402 LVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred hhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 44 33332 33222 5677777777789999999999998888765443
No 66
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.3e-05 Score=85.06 Aligned_cols=302 Identities=19% Similarity=0.190 Sum_probs=198.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
..+.+.+.+.+.+...+..|+..+..+..+. .+....+.+++..+...+.+..+...++.+..+...... +-. .
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~-~Lg---~ 208 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG-NLG---P 208 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH-hcC---C
Confidence 5667777777777888888888888876553 455666778888999988877633333323333332222 100 1
Q ss_pred HHhcCC---hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507 330 VIEHDA---VPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR 406 (684)
Q Consensus 330 i~~~g~---i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~ 406 (684)
..+.+. +|.++.-..+....+|+.|..+.-.+...-+... -.-.+++++.-+... .-..+..++..++.+..
T Consensus 209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~-kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 209 PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEA-KWRTKMASLELLGAMAD 283 (569)
T ss_pred CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHH
Confidence 223333 4444444556778899888888877754332210 011345555555333 44566788889998888
Q ss_pred CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHH
Q 035507 407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVG 486 (684)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 486 (684)
..|..-......++|.+.+.|.+..++++..+..++..++..-.+..++ .++|.|+..+.+++..+. .++..|+
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~~~~-e~~~~L~ 357 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSCYTP-ECLDSLG 357 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhcCcccchH-HHHHhhc
Confidence 8776666777999999999999999999999999998888211222222 357889999988764433 2333333
Q ss_pred HHHcCChhhHHHHHhcCC----hHHHHHHhccCCChhHHHHHHHHHHHHhcC--ChHHHHHHHHhCCHHHHHHHhccCCH
Q 035507 487 NIVMGDDFQTQCIINHGA----VPCLLALLIHNHKNSIKKEVSWIISNIACG--NREQIQAVIDAGLIGPLVNLLQNAEF 560 (684)
Q Consensus 487 nl~~~~~~~~~~~i~~g~----l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~g~l~~Li~ll~~~~~ 560 (684)
.-+-- ..++... +|.|..-+... +..+++.++.++.|++.- ++..+..++.. ++|.+-..+.+..+
T Consensus 358 ~ttFV------~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~P 429 (569)
T KOG1242|consen 358 ATTFV------AEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVP 429 (569)
T ss_pred ceeee------eeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCCh
Confidence 22111 1112223 45555555555 778899999999999973 45555555543 78888888888899
Q ss_pred hHHHHHHHHHHHhhcC
Q 035507 561 DIKEEAAWAISNASSR 576 (684)
Q Consensus 561 ~v~~~a~~aL~nl~~~ 576 (684)
++|..++.||+.+...
T Consensus 430 EvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 430 EVRAVAARALGALLER 445 (569)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999988763
No 67
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=4.1e-05 Score=83.17 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=81.0
Q ss_pred HHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507 463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV 542 (684)
Q Consensus 463 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 542 (684)
+..|.++|.+++..++.-|+..|......++...+. -=..++..|+++ |..+|+.|...+..+... .++..
T Consensus 315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~- 385 (866)
T KOG1062|consen 315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV- 385 (866)
T ss_pred HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-
Confidence 445556666666666666666666666555533221 124677888898 999999999888877653 23332
Q ss_pred HHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 035507 543 IDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA 601 (684)
Q Consensus 543 ~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~ 601 (684)
++..|+..|...+++.+...+.-+..++....|+.+-+ ++.+...+...
T Consensus 386 ----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~a 434 (866)
T KOG1062|consen 386 ----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTA 434 (866)
T ss_pred ----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhc
Confidence 46678888888899999999999999988766655443 44555555543
No 68
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=3.8e-06 Score=92.95 Aligned_cols=272 Identities=18% Similarity=0.210 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc
Q 035507 265 LQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL 343 (684)
Q Consensus 265 ~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL 343 (684)
.|+.|...--...+.+. |+-+ +|..++.|-+. --|..|+..|+....-.+-....-..-|+.|+++++|
T Consensus 452 eQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLL 521 (1387)
T KOG1517|consen 452 EQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLL 521 (1387)
T ss_pred HHHHHHHHHHHhccccCCChHh-------cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHh
Confidence 35555544444444443 3333 56666766543 3466788888888876777677777789999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC--CchHHHHHHHHHHHHhccCCCCCChhhh-hchH
Q 035507 344 ASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH--TELSMLRIATTTLSNLCRGKPRPLFDQV-RPAL 420 (684)
Q Consensus 344 ~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~--~~~~v~~~a~~~L~nL~~~~~~~~~~~~-~~~l 420 (684)
+++-.+++-..+.+.+.|-..++.|+..+.+.++-...++.|..+ -+++-+..|+..|+.++++.+..+.... .+.+
T Consensus 522 QS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li 601 (1387)
T KOG1517|consen 522 QSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLI 601 (1387)
T ss_pred ccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHH
Confidence 999999999888888888777788888888777777777777542 2457788899999999999754444443 6677
Q ss_pred HHHHHHhcCC-cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC----Chhh
Q 035507 421 PALAQLIHSN-DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG----DDFQ 495 (684)
Q Consensus 421 ~~L~~lL~~~-d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~~~ 495 (684)
...+..+.++ .+-.+.++|-+|+.|- ...++..=.-.+.++.+.|..+|.++-+.||.+|+.+|+.+..+ .+++
T Consensus 602 ~iCle~lnd~~~pLLrQW~~icLG~LW-~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~ 680 (1387)
T KOG1517|consen 602 GICLEHLNDDPEPLLRQWLCICLGRLW-EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ 680 (1387)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHh-hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence 7888888875 6888999999999999 66655555556668899999999999999999999999999875 2333
Q ss_pred HHHH------------HhcCCh---HHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCH
Q 035507 496 TQCI------------INHGAV---PCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLI 548 (684)
Q Consensus 496 ~~~~------------i~~g~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l 548 (684)
...+ ++.-+. -.++.+++.. ++-+|.+.+-+|+.++.+...+...+.-....
T Consensus 681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~ 747 (1387)
T KOG1517|consen 681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLL 747 (1387)
T ss_pred hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhcc
Confidence 2222 222222 2566677777 89999999999999998776666655443333
No 69
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.55 E-value=2e-05 Score=83.21 Aligned_cols=241 Identities=17% Similarity=0.054 Sum_probs=171.4
Q ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 250 ILPMMVAGVW-SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 250 ~l~~lv~~L~-s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
.++.++..+. ..++++...++.++.. .+.+. ++..|++.|.+.+ +.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA---QEDAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc---cCChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCc-------
Confidence 4677777774 4556776666555532 22111 3788899998887 7899999999986654
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
.+..+.|+.+|.++++.++..++.+++..-. ...+.+...| ++.+..++..++.+|+.+...
T Consensus 116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~- 177 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR- 177 (410)
T ss_pred ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc-
Confidence 3567888999999999999888888877321 1346777777 688999999999999988765
Q ss_pred CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
..++.|...+.+.++.|+..|++++..+. . . ..+..+..+...........+..+++..
T Consensus 178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG-~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAG-S--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcC-C--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 45667778889999999999999998876 2 2 1234445444444444444444444333
Q ss_pred HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHH
Q 035507 489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAW 568 (684)
Q Consensus 489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~ 568 (684)
+.+ .+++.|..++.++ . ++..++++++.+... ..++.|+..+.+. .++..|.+
T Consensus 237 --~~~---------~a~~~L~~ll~d~-~--vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~--~~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA-A--TRREALRAVGLVGDV-----------EAAPWCLEAMREP--PWARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh-h--hHHHHHHHHHHcCCc-----------chHHHHHHHhcCc--HHHHHHHH
Confidence 222 3677888888776 3 899999999987543 2688888888643 49999999
Q ss_pred HHHHhhc
Q 035507 569 AISNASS 575 (684)
Q Consensus 569 aL~nl~~ 575 (684)
++..++-
T Consensus 290 A~~~ItG 296 (410)
T TIGR02270 290 AFSLITG 296 (410)
T ss_pred HHHHhhC
Confidence 9999975
No 70
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.54 E-value=2.9e-06 Score=86.06 Aligned_cols=269 Identities=14% Similarity=0.078 Sum_probs=180.2
Q ss_pred hccHHHHHHHhcCCCHHH--HHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507 248 LEILPMMVAGVWSDDNNL--QLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 248 ~~~l~~lv~~L~s~~~~~--~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
-+.+..+++++++.+.+. +.+|++.|..++... +.+.++..| +..++.+-+....++.+...+.+|.++..++.+
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae--N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE--NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh--hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 367899999999988655 889999999988764 666676666 444444444444478999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507 326 NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404 (684)
Q Consensus 326 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL 404 (684)
....+++.|++..++-.....++.+.++|+.+|+|++-+. ...+..+.+..+-+-|..+- .+.|.-++.+||-+...+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 9999999999999999888889999999999999999554 23344455555544444443 556777788999999999
Q ss_pred ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHH
Q 035507 405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT 484 (684)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 484 (684)
+..+........++.+..+-.++.+-||..-..- -..-+ ++ ....-+++|+.+|++..-..+..++.-
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD---~hd~a-QG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~ 402 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFARD---AHDYA-QG--------RGPDDLQRLVPLLDSNRLEAQCIGAFY 402 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhhh---hhhhh-cc--------CChHHHHHhhhhhhcchhhhhhhHHHH
Confidence 8887444444445555555555555554321110 00001 00 011357888999986654444433333
Q ss_pred HHHHHcCC--hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 485 VGNIVMGD--DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 485 L~nl~~~~--~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
+..=+... ....+.+-+-|.+..|-.+..++ +....+.|..+|.-|..
T Consensus 403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcc
Confidence 32222211 12234455678999999999877 66556666666666644
No 71
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=0.00013 Score=71.36 Aligned_cols=339 Identities=17% Similarity=0.179 Sum_probs=231.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC----CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES----MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~----~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
..|.+-..|..++..++.-|+..+..++...+ ..+..++.+|+++.++.++..++ .++...|...+..|+. .+.
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpa 160 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPA 160 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHH
Confidence 34666677778888888889988888887665 23445678999999999998888 7999999999999998 677
Q ss_pred hHHHHHhcCChHHHH--HhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHH
Q 035507 326 NTKVVIEHDAVPIFV--KLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSN 403 (684)
Q Consensus 326 ~~~~i~~~g~i~~Li--~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~n 403 (684)
....+.+......+- .+-...+.-+|..+...+-.+..-++.....+-..|.+..|..-+....|.-++.+++.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 777777776554433 232334566777888888888888877677777889999988888666788888888888888
Q ss_pred hccCCCCCChhhhhchHHHHHHHhc--CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhc-------hHHHHHHhcCCCC
Q 035507 404 LCRGKPRPLFDQVRPALPALAQLIH--SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAG-------VCGRLVELLGHPS 474 (684)
Q Consensus 404 L~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g-------~l~~L~~lL~~~~ 474 (684)
|........+....+++..+..++. +.+|--...++...+.+. +. ..+..+.+.. ++...++.+...+
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff--gk-eaimdvseeaicealiiaidgsfEmiEmnD 317 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF--GK-EAIMDVSEEAICEALIIAIDGSFEMIEMND 317 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh--cc-hHHhhcCHHHHHHHHHHHHHhhHHhhhcCC
Confidence 8877666666677888888888886 445666666666666655 21 1121112222 3344556667789
Q ss_pred cccHhHHHHHHHHHHcCChhhHHHHHhcCC--hHHHHH-HhccCCChhHHHHHHHHHHHHhcC---ChHHHH--------
Q 035507 475 PSVLTPALWTVGNIVMGDDFQTQCIINHGA--VPCLLA-LLIHNHKNSIKKEVSWIISNIACG---NREQIQ-------- 540 (684)
Q Consensus 475 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~--l~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~-------- 540 (684)
++.+..|..++|.+.+... ..+.+...|- ...++. ..... ...-+..+..+|.+|+.. .++++.
T Consensus 318 pdaieaAiDalGilGSnte-GadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerl 395 (524)
T KOG4413|consen 318 PDAIEAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERL 395 (524)
T ss_pred chHHHHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHH
Confidence 9999999999999976554 5555554442 223322 22222 333456777888888752 222211
Q ss_pred --HHHHh-------CCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHH-HHHCCChHHHHhh
Q 035507 541 --AVIDA-------GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKY-LVTEGCIKPLCDL 597 (684)
Q Consensus 541 --~l~~~-------g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~-l~~~g~l~~L~~l 597 (684)
.++++ .-...+..+++.+.++++..|...+..++. .|-..+. +...++++...+.
T Consensus 396 rclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa--qPWalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 396 RCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA--QPWALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred HHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc--CcHHHHHHhcCccceeeeccc
Confidence 11111 235566777888899999999999999986 3433333 3456666655543
No 72
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=2.9e-05 Score=84.44 Aligned_cols=342 Identities=17% Similarity=0.175 Sum_probs=233.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
...+.+++.....|.+.+.-.-..+.+-+...+.. ..++++.++.=..+++ +.+|..|++.++.+.- +....
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e 120 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE 120 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH
Confidence 46799999999999888777777787777665421 1245666666666677 8999988888776654 11111
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
-+...+...+++.++-+|..|+.+..++-..++ +.+...|.+..|-.++ .+.++.+..+|+.+|..+....
T Consensus 121 -----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 121 -----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred -----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhC
Confidence 346788899999999999999999999876653 4667788888888888 5889999999999999999887
Q ss_pred CC-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507 409 PR-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487 (684)
Q Consensus 409 ~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 487 (684)
+. .........+..++..+..-++.-+...+.++.+-. ..++...+ .++.++...|.+.++.+...+...+..
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~-p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYV-PKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC-CCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence 53 333344555566666666666667777777776655 33332222 357888899999999999999999988
Q ss_pred HHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHH-------------------------H
Q 035507 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQA-------------------------V 542 (684)
Q Consensus 488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~-------------------------l 542 (684)
+....+.....+ -..+-+.++.++.+. + +++..|..-+.-+....+..... +
T Consensus 266 ~~~~~~~~~~~~-~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l 342 (734)
T KOG1061|consen 266 LVKYLKQVNELL-FKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL 342 (734)
T ss_pred HHHHHHHHHHHH-HHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence 876555422222 235667777777666 3 55544433333332222221110 0
Q ss_pred H-HhC---CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507 543 I-DAG---LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK 618 (684)
Q Consensus 543 ~-~~g---~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~ 618 (684)
. +.+ ++.-+.......|.+..++|.+|+++++..... .++++..|.+++......+++.+...++.+++
T Consensus 343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 0 111 233333333455888999999999999873321 26789999999998777788888888888888
Q ss_pred ccccc
Q 035507 619 VGEAE 623 (684)
Q Consensus 619 ~~~~~ 623 (684)
.-++.
T Consensus 416 kyP~~ 420 (734)
T KOG1061|consen 416 KYPNK 420 (734)
T ss_pred cCCCc
Confidence 76543
No 73
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=6.6e-06 Score=91.13 Aligned_cols=256 Identities=17% Similarity=0.208 Sum_probs=199.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
+.+|.+++.|-| .--++.|+..|.+.+...+-.+..-..-|+.|..+++|+++. .+++..-+.+-+.|..-++.+..
T Consensus 472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred HhcchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence 456666766655 245778888888888887777777788899999999999988 89999999999999998899998
Q ss_pred HHHhcCChHHHHHhcCC-C--ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 035507 329 VVIEHDAVPIFVKLLAS-P--SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLC 405 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~-~--~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~ 405 (684)
.+++.++-.++++.|.. + +++-|..|+.+|+.++..-+..+....+.+.+...+..++.++.+-++..++-+|+.|-
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 89988888888888876 2 45788899999999998877777788888888888888866556777888999999998
Q ss_pred cCCCCC-ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC----ChHHHHHH------------HHhchH---HH
Q 035507 406 RGKPRP-LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR----NNDKIQAV------------IEAGVC---GR 465 (684)
Q Consensus 406 ~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~----~~~~~~~~------------~~~g~l---~~ 465 (684)
.+.... -......+...|..+|.++-++|+.+|+.||+.+. .+ .+++...+ ++.-+. ..
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl-~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL-SNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh-cccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 876433 33344778889999999999999999999999888 54 23333222 121122 25
Q ss_pred HHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHH
Q 035507 466 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 508 (684)
Q Consensus 466 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L 508 (684)
++.++++..+-++.+..-+++.++.+...+...+.-....+..
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~ 750 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPES 750 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccch
Confidence 7777888899999999999999998887766655544444433
No 74
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.46 E-value=9.5e-05 Score=81.57 Aligned_cols=407 Identities=16% Similarity=0.186 Sum_probs=241.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHH-------------------------------------HHcC
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEV-------------------------------------IESG 291 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~i-------------------------------------i~~g 291 (684)
.+..+++.|...++++|..|++++.-+.+.-+ ...+.+ ....
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 56778888888888888888888774443322 111111 1122
Q ss_pred CH----HHHHHhhcC-CCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC
Q 035507 292 VV----PRFVEFLMR-EDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSS 366 (684)
Q Consensus 292 ~i----~~Lv~lL~~-~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~ 366 (684)
+. |.|.+.+.. ++...++..++..+....+.-...... ...+.+..++..+.++...+|..|+.+|+.++...+
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 22 333333322 222347777777666555411111111 233556667777788889999999999999997654
Q ss_pred CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHh---cCCcHHHHHHHHHHHH
Q 035507 367 GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI---HSNDEQVLTDACWALF 443 (684)
Q Consensus 367 ~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL---~~~d~~v~~~al~~L~ 443 (684)
. + .-.+.+..++.-|.+.......+..+.+|+.+|+....+.-.....++|.+.+.. ..+|++.++.++.++.
T Consensus 207 ~--~--ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 207 R--D--LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred H--H--HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 3 2 2234577778888777778888889999999999875555566788899999988 6788999999999998
Q ss_pred hhccCCChHHHHHHHHhchHHHHHHhcCCC----------------------------------CcccHhHHHHHHHHHH
Q 035507 444 GLSGDRNNDKIQAVIEAGVCGRLVELLGHP----------------------------------SPSVLTPALWTVGNIV 489 (684)
Q Consensus 444 ~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~----------------------------------~~~v~~~al~~L~nl~ 489 (684)
.+. ...+..+-.... .++..+++.+..+ ++.+|.+|+.++..+.
T Consensus 283 ~fl-~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~I 360 (1233)
T KOG1824|consen 283 SFL-RRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVI 360 (1233)
T ss_pred HHH-HhChhhhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHH
Confidence 777 444444333222 2444455544320 1578999999988876
Q ss_pred cCChhhHHHH------------------HhcCChHHHHHHhccCC-------C-------------hhHHHHHHHHHHHH
Q 035507 490 MGDDFQTQCI------------------INHGAVPCLLALLIHNH-------K-------------NSIKKEVSWIISNI 531 (684)
Q Consensus 490 ~~~~~~~~~~------------------i~~g~l~~L~~lL~~~~-------~-------------~~v~~~a~~~L~nl 531 (684)
....+....+ +...++..++.+|.+.. + ..++...-.++..|
T Consensus 361 sSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai 440 (1233)
T KOG1824|consen 361 SSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAI 440 (1233)
T ss_pred hccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHH
Confidence 5442221111 11233444444442210 0 01111222222222
Q ss_pred h----------------------cCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 035507 532 A----------------------CGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRGTHDQIKYLVT 587 (684)
Q Consensus 532 ~----------------------~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 587 (684)
. ...|.....- ...++|.++..+.+. ....+..++..+.++.....++...-+..
T Consensus 441 ~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~-~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~ 519 (1233)
T KOG1824|consen 441 QKQLREKSVKTRQGCFLLLTELINVLPGALAQH-IPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLS 519 (1233)
T ss_pred HHHHhhccccchhhHHHHHHHHHHhCcchhhhc-ccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchh
Confidence 1 1111100000 012467777777654 56678888888888887666665443322
Q ss_pred CCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHh-hcCCCHHHHHHHHH
Q 035507 588 EGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENL-QSHDNNEIHEKSVK 666 (684)
Q Consensus 588 ~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L-~~~~~~~i~~~a~~ 666 (684)
...+++.....++-+++-.-++-....++++-....... ....++|...+-.+ .+..| ....+.+|+++|..
T Consensus 520 -~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~--~~d~~~~v~~m~~~----tl~rL~a~d~DqeVkeraIs 592 (1233)
T KOG1824|consen 520 -ALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPS--SFDASPYVKTMYDC----TLQRLKATDSDQEVKERAIS 592 (1233)
T ss_pred -hhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCc--cCCCChhHHHHHHH----HHHHHhcccccHHHHHHHHH
Confidence 256666677778888888888888888888765543210 12244555555422 34445 36678999999998
Q ss_pred HHHHh
Q 035507 667 ILETY 671 (684)
Q Consensus 667 ii~~~ 671 (684)
.+..|
T Consensus 593 cmgq~ 597 (1233)
T KOG1824|consen 593 CMGQI 597 (1233)
T ss_pred HHHHH
Confidence 87766
No 75
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.45 E-value=5.8e-05 Score=79.38 Aligned_cols=299 Identities=14% Similarity=0.099 Sum_probs=192.3
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch--hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE--NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~--~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r 369 (684)
++...+.+|++.. |.+|..|+...+.++..-.. ....+...|. .|.+.|....+++.-..+.|+..|.....--.
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 4566778888888 89999999988887752111 1222333342 34556677888888877777777753321100
Q ss_pred hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCC-hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccC
Q 035507 370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL-FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGD 448 (684)
Q Consensus 370 ~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~ 448 (684)
-.-.-.|+++.|...| .+....+..+.+..+..+|...|... ......+.=-|+.+|.+-+.+++.+|..++++++ .
T Consensus 682 mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is-~ 759 (975)
T COG5181 682 MQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS-R 759 (975)
T ss_pred cCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH-h
Confidence 0112356788888888 67778889999999999998875422 2222444445778888899999999999999998 2
Q ss_pred CChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507 449 RNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII 528 (684)
Q Consensus 449 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L 528 (684)
. +--..++..|+.-|+..+-..|....-+++-.+..+. -..++|.|+.=...+ +..|+.-...++
T Consensus 760 a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam 824 (975)
T COG5181 760 A-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAM 824 (975)
T ss_pred h-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence 2 1122355566666655554445444445554443332 123566666666666 777888777777
Q ss_pred HHHhcCC-hHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc-------cC
Q 035507 529 SNIACGN-REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL-------QC 600 (684)
Q Consensus 529 ~nl~~~~-~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL-------~~ 600 (684)
+.+.... .....++. -+.|.|-+.|.+.|+.-|..|...+.+++.++. -.|..+..+.+| -.
T Consensus 825 ~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~--------gtg~eda~IHLlNllwpNIle 894 (975)
T COG5181 825 CFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP--------GTGDEDAAIHLLNLLWPNILE 894 (975)
T ss_pred HHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC--------CcccHHHHHHHHHHhhhhccC
Confidence 7765521 12233332 367888889999999999999999999987532 112222333332 35
Q ss_pred CChHHHHHHHHHHHHHHhcc
Q 035507 601 ADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 601 ~~~~v~~~al~~L~~il~~~ 620 (684)
+.|.++....+++..+..+-
T Consensus 895 ~sPhvi~~~~Eg~e~~~~~l 914 (975)
T COG5181 895 PSPHVIQSFDEGMESFATVL 914 (975)
T ss_pred CCcHHHHHHHHHHHHHHHHh
Confidence 67888888888888776653
No 76
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=3.1e-05 Score=75.19 Aligned_cols=271 Identities=15% Similarity=0.198 Sum_probs=172.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVI--ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii--~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
+..++.++.+.+|.++..|+..+..+... . .+.+. +.-.++.+.+++.... + -..|+.+|.|++. +...++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~--~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-G--LQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELRK 77 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-c--hhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHHH
Confidence 46789999999999999999988886655 1 11111 2235778889988776 4 6679999999998 777888
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh------cCCHHHHHHHhccCCc-hHHHHHHHHHH
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS------EGALIPLLAQLNEHTE-LSMLRIATTTL 401 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~------~g~l~~Ll~~L~~~~~-~~v~~~a~~~L 401 (684)
.+++. .+..++..+.++...+.+..+..|.|++.+...++..... .|.+.........+.+ ..-..+.+..+
T Consensus 78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 88876 7888888888887788889999999999887665443322 2333333333322222 12345667778
Q ss_pred HHhccCCCCCChhhhhchHH--HHHHHhcCCcHHHH-HHHHHHHHhhccCCChHHHHHHHHh--chHHHHH---------
Q 035507 402 SNLCRGKPRPLFDQVRPALP--ALAQLIHSNDEQVL-TDACWALFGLSGDRNNDKIQAVIEA--GVCGRLV--------- 467 (684)
Q Consensus 402 ~nL~~~~~~~~~~~~~~~l~--~L~~lL~~~d~~v~-~~al~~L~~L~~~~~~~~~~~~~~~--g~l~~L~--------- 467 (684)
+|+++....+........+| .+..+-. .+..++ ...+.+|.|.||+. .....+++. .++|.++
T Consensus 157 ~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 157 ANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCcccc
Confidence 88887764444433333333 2333333 444443 45677888877332 222222222 2333322
Q ss_pred ------------HhcC-----CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507 468 ------------ELLG-----HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN 530 (684)
Q Consensus 468 ------------~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 530 (684)
++|. .+++.++..-+.+|.-++.... .++.+.+.|+.|.+-.+-....++++++.+-.....
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2221 1457899999999988886544 777888888888887776665477777655555554
Q ss_pred Hhc
Q 035507 531 IAC 533 (684)
Q Consensus 531 l~~ 533 (684)
+..
T Consensus 313 Lv~ 315 (353)
T KOG2973|consen 313 LVR 315 (353)
T ss_pred HHh
Confidence 444
No 77
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00061 Score=73.39 Aligned_cols=257 Identities=14% Similarity=0.150 Sum_probs=178.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~ 371 (684)
+-+-++.+|++.. |-+|..|+.++..+.-..|+..+ ..+|.|.+-|.++++.|+..|+..++.||+.+|.. .
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--y 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--Y 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--c
Confidence 4566778888888 89999999999999885444332 46899999999999999999999999999888763 1
Q ss_pred HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCc-HHHHHHHHHHHH--hhccC
Q 035507 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSND-EQVLTDACWALF--GLSGD 448 (684)
Q Consensus 372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~al~~L~--~L~~~ 448 (684)
+ ..-|.+..+|.++.+.=+....+-..++|+--.|. ....++|.+..++++.. -.+...++.++. +++ .
T Consensus 217 L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s-~ 288 (877)
T KOG1059|consen 217 L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMS-S 288 (877)
T ss_pred c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhc-c
Confidence 1 12345566665556655666666666777655432 33567888888888764 344555555542 444 3
Q ss_pred CChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507 449 RNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII 528 (684)
Q Consensus 449 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L 528 (684)
+.++....+. =.++.|-.++.+.++.++.-++-+++.++..++...++- -+.++.+|.+. |+.+|..|...+
T Consensus 289 g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk-D~SIRlrALdLl 360 (877)
T KOG1059|consen 289 GMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK-DESIRLRALDLL 360 (877)
T ss_pred CCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC-CchhHHHHHHHH
Confidence 3222222111 146778888899999999999999999998777655543 45788999998 999999999998
Q ss_pred HHHhcCChHHHHHHHHhCCHHHHHHHhccC-CHhHHHHHHHHHHHhhcCCCH
Q 035507 529 SNIACGNREQIQAVIDAGLIGPLVNLLQNA-EFDIKEEAAWAISNASSRGTH 579 (684)
Q Consensus 529 ~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~~~ 579 (684)
.-+... +++.. ++..|+..+... ....+.+.+.-+..+++..+.
T Consensus 361 ~gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY 405 (877)
T KOG1059|consen 361 YGMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY 405 (877)
T ss_pred HHHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence 888653 33333 344455544444 347777777777777764433
No 78
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00021 Score=69.55 Aligned_cols=273 Identities=15% Similarity=0.168 Sum_probs=179.4
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHH
Q 035507 379 IPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVI 458 (684)
Q Consensus 379 ~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~ 458 (684)
..++.++ .+.++.++..|+.-+..++......-.......++.+.+++...++ ...|..++.|++ ......+.++
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnls--q~~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLS--QKEELRKKLL 80 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHH--hhHHHHHHHH
Confidence 4566666 7788899999998888888773222223346678889999987777 788999999999 4555666666
Q ss_pred HhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHH------hcCChHHHHHHhccCCChhH-HHHHHHHHHHH
Q 035507 459 EAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII------NHGAVPCLLALLIHNHKNSI-KKEVSWIISNI 531 (684)
Q Consensus 459 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i------~~g~l~~L~~lL~~~~~~~v-~~~a~~~L~nl 531 (684)
+. ++..++..+.++.......++..+.|++...+....... +.|.+.........+.+... -...+.+++|+
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 66 888899999998888999999999999987764443332 24566666666655423111 23456677777
Q ss_pred hcCChHHHHHHHHhCCHH--HHHHHhccCCHhHHHH-HHHHHHHhhcCCCHHHHHHHHHC--CChHHH------------
Q 035507 532 ACGNREQIQAVIDAGLIG--PLVNLLQNAEFDIKEE-AAWAISNASSRGTHDQIKYLVTE--GCIKPL------------ 594 (684)
Q Consensus 532 ~~~~~~~~~~l~~~g~l~--~Li~ll~~~~~~v~~~-a~~aL~nl~~~~~~~~~~~l~~~--g~l~~L------------ 594 (684)
+.. ...+..+.+...+| .+.. +++.+..+|+. .+..|.|++-.. ..-..+... .+++.+
T Consensus 160 s~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 160 SQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred hhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence 653 34555555544322 2333 23356666655 557777766421 111122211 111111
Q ss_pred ---------Hhhcc-----CCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHh-hcCCCHH
Q 035507 595 ---------CDLLQ-----CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENL-QSHDNNE 659 (684)
Q Consensus 595 ---------~~lL~-----~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L-~~~~~~~ 659 (684)
.+++. .+|+.++...+++|..++... .-.+.++.-|+...+..+ ...++++
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~--------------~GRe~lR~kgvYpilRElhk~e~ded 301 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR--------------AGREVLRSKGVYPILRELHKWEEDED 301 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh--------------HhHHHHHhcCchHHHHHHhcCCCcHH
Confidence 13332 467899999999998777543 245788999999999998 4567899
Q ss_pred HHHHHHHHHHHhcCCC
Q 035507 660 IHEKSVKILETYWCGR 675 (684)
Q Consensus 660 i~~~a~~ii~~~f~~e 675 (684)
+.+.+..+.+-...+|
T Consensus 302 ~~~ace~vvq~Lv~~e 317 (353)
T KOG2973|consen 302 IREACEQVVQMLVRLE 317 (353)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9988888887666633
No 79
>PF05536 Neurochondrin: Neurochondrin
Probab=98.35 E-value=0.00028 Score=77.74 Aligned_cols=194 Identities=18% Similarity=0.130 Sum_probs=137.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC---cHHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESM---PIEEVIESGVVPRFVEFLMRED------YPQLQFQAAWALTNI 319 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~---~~~~ii~~g~i~~Lv~lL~~~~------~~~v~~~A~~~L~~l 319 (684)
..+...+++|++.+.+.++.|+..+.+++...+. ..+.+.++=+.+.+-++|.++. ....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999978889999999999887652 2345777767788889998722 256778899999999
Q ss_pred hcCCchhHHHHHhcCChHHHHHhcCCCCh-HHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHH
Q 035507 320 ASGTSENTKVVIEHDAVPIFVKLLASPSD-DVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIAT 398 (684)
Q Consensus 320 ~~~~~~~~~~i~~~g~i~~Li~lL~~~~~-~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~ 398 (684)
+. .++....---.+-||.|++.+.+.+. .+...|..+|..++... ..++.+.+.|+++.|...+.+ .......++
T Consensus 85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al 160 (543)
T PF05536_consen 85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN--QSFQMEIAL 160 (543)
T ss_pred cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence 98 55543222222569999999988666 99999999999999555 457888999999999999855 344566677
Q ss_pred HHHHHhccCCCC----CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 399 TTLSNLCRGKPR----PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 399 ~~L~nL~~~~~~----~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
.++.+++..... ........+++.+...+..........+|..|..+.
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L 212 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFL 212 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhc
Confidence 777776665421 112222345555555555555555666666666555
No 80
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=4.1e-06 Score=86.57 Aligned_cols=304 Identities=15% Similarity=0.100 Sum_probs=194.1
Q ss_pred HHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcCCc
Q 035507 353 QAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSND 431 (684)
Q Consensus 353 ~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d 431 (684)
+++.+|..+++.-...|.-+.+..+.++|++.| +.++..+...++..+.|+.-.- +-.......+++..++.++.+.|
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 344455566555445566677788899999999 6666666666777777776554 44455556899999999999999
Q ss_pred HHHHHHHHHHHHhhccCCChHH--HHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChh---hHHHHHhc----
Q 035507 432 EQVLTDACWALFGLSGDRNNDK--IQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF---QTQCIINH---- 502 (684)
Q Consensus 432 ~~v~~~al~~L~~L~~~~~~~~--~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~---~~~~~i~~---- 502 (684)
...+....|.+.++. .+.+.. .+ .+..-.+..++.+..++...++...+.++.|+++.+.. ..+..+..
T Consensus 487 daLqans~wvlrHlm-yncq~~ekf~-~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ 564 (743)
T COG5369 487 DALQANSEWVLRHLM-YNCQKNEKFK-FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR 564 (743)
T ss_pred hhhhhcchhhhhhhh-hcCcchhhhh-hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence 999999999999998 444333 34 34444578999999999999999999999999885432 11111111
Q ss_pred CChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH-hCCHHHHHHHhccC-----------CHhHHHHHHHHH
Q 035507 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID-AGLIGPLVNLLQNA-----------EFDIKEEAAWAI 570 (684)
Q Consensus 503 g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~-----------~~~v~~~a~~aL 570 (684)
-....+++.+... ++..-.+.+..|.++++.+..-.+.+.. ..++..+..+|... ...+-..-....
T Consensus 565 ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~ 643 (743)
T COG5369 565 YLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTI 643 (743)
T ss_pred HHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceee
Confidence 1456677777777 6766677799999998866454444443 33444444444211 111111111222
Q ss_pred HHhhcCCCHHHHHHHHHCCCh--HHHHhhc---cCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhch
Q 035507 571 SNASSRGTHDQIKYLVTEGCI--KPLCDLL---QCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEG 645 (684)
Q Consensus 571 ~nl~~~~~~~~~~~l~~~g~l--~~L~~lL---~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 645 (684)
.++.... +..+ .+.. +++-.+= ..++.++.....|.+.++....+..... +.....++.+.+.|.
T Consensus 644 v~l~e~~--d~f~----r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt----ratveR~~iL~~~G~ 713 (743)
T COG5369 644 VNLSENS--DKFK----RLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT----RATVERIQILCANGI 713 (743)
T ss_pred ecccccc--cccc----cceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc----hhhHHHHHHHHHccH
Confidence 2222210 1111 1111 1221111 1234557777777777755443322211 234567888999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHH
Q 035507 646 LEKIENLQSHDNNEIHEKSVKILET 670 (684)
Q Consensus 646 ~~~L~~L~~~~~~~i~~~a~~ii~~ 670 (684)
-+-+..+|.|+++.|++++...+..
T Consensus 714 ~e~l~k~q~~~Sl~vrek~~taL~~ 738 (743)
T COG5369 714 REWLVKIQAKDSLIVREKIGTALEN 738 (743)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHh
Confidence 9999999999999999999999864
No 81
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.33 E-value=0.0001 Score=77.94 Aligned_cols=245 Identities=19% Similarity=0.076 Sum_probs=174.0
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507 291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370 (684)
Q Consensus 291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~ 370 (684)
..++.++..|.....+.++..|++++..... + .++..|+..|.++++.++..++.+|+.+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 3578888888544447888877766643222 1 23899999999999999999999999752
Q ss_pred hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC
Q 035507 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN 450 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~ 450 (684)
.......|+..+ .+.++.++..++.++...- ....+.+..++.+.++.++..++.+++.+. ..
T Consensus 115 ---~~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~-~~- 177 (410)
T TIGR02270 115 ---GRQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELP-RR- 177 (410)
T ss_pred ---chHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhc-cc-
Confidence 122466778888 7778889888887776622 123567888899999999999999999987 32
Q ss_pred hHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507 451 NDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN 530 (684)
Q Consensus 451 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 530 (684)
..++.|...+.+.++.+|..|+..++.+.. +. .++.+....... ....+..+..++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~-g~~~~~~l~~~lal 235 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLE-GGPHRQRLLVLLAV 235 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhcc-CccHHHHHHHHHHh
Confidence 346678888999999999999999977632 31 334555544444 34444444444443
Q ss_pred HhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHH
Q 035507 531 IACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCL 610 (684)
Q Consensus 531 l~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al 610 (684)
. +.+ ..++.|..++.+.. ++..++++++.+-. +. .++.|...+... .+...+-
T Consensus 236 ~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~---p~---------av~~L~~~l~d~--~~aR~A~ 288 (410)
T TIGR02270 236 A--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGD---VE---------AAPWCLEAMREP--PWARLAG 288 (410)
T ss_pred C--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC---cc---------hHHHHHHHhcCc--HHHHHHH
Confidence 3 222 36778888887644 89999999997743 22 567777777643 4899999
Q ss_pred HHHHHHHhcc
Q 035507 611 EGLENILKVG 620 (684)
Q Consensus 611 ~~L~~il~~~ 620 (684)
+++..|....
T Consensus 289 eA~~~ItG~~ 298 (410)
T TIGR02270 289 EAFSLITGMD 298 (410)
T ss_pred HHHHHhhCCC
Confidence 9999998754
No 82
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.32 E-value=0.00013 Score=81.84 Aligned_cols=382 Identities=14% Similarity=0.126 Sum_probs=220.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.++.+..+...+...+++.|...+..+...-+... -....+.+.+++...+.+ ..++.........+... ....
T Consensus 277 v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~-~~v~~~~~~~~~~L~~~---~~~~ 350 (759)
T KOG0211|consen 277 VLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGS-WRVSYMVADKFSELSSA---VGPS 350 (759)
T ss_pred ccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChh-HHHHHHHhhhhhhHHHH---hccc
Confidence 34444444444444555555555555443322111 122234455555555544 34444333333333320 0001
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
......++....+++....+.+..++.-...++.... .++..+....+++.+-.+. .+.+..++...+..+..+.--.
T Consensus 351 ~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~ 429 (759)
T KOG0211|consen 351 ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPIL 429 (759)
T ss_pred cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccC
Confidence 1111234445555555555555444444444442111 1122233333333333333 5556666665555444443322
Q ss_pred CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
+ ....+....|.+...+.+.++.++.+..+.+..+- ...+..-........+|.+..+-.+....++.+.++.+--+
T Consensus 430 ~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~-~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~l 506 (759)
T KOG0211|consen 430 P--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLE-EVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQL 506 (759)
T ss_pred C--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHH-hccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHH
Confidence 2 33445778888888999999999999998887665 33333333344445788888888777888888888888887
Q ss_pred HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHH
Q 035507 489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAW 568 (684)
Q Consensus 489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~ 568 (684)
+.... ..+.+...-+.+...+.+. ...+++.|+..+.-++..... .......+|.++....+++...|...+.
T Consensus 507 a~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~---~w~~~~~i~k~L~~~~q~~y~~R~t~l~ 579 (759)
T KOG0211|consen 507 ALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGS---EWARLEEIPKLLAMDLQDNYLVRMTTLF 579 (759)
T ss_pred HHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCc---chhHHHhhHHHHHHhcCcccchhhHHHH
Confidence 75332 2344444556666667666 778999999988888752211 1112246788888777777888888888
Q ss_pred HHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHH
Q 035507 569 AISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEK 648 (684)
Q Consensus 569 aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 648 (684)
++..++...+.+. .....++.+.++..++.+.|+..+++.+..+...-... ..+......
T Consensus 580 si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~----------------~~~~~v~pl 639 (759)
T KOG0211|consen 580 SIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES----------------VRDEEVLPL 639 (759)
T ss_pred HHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH----------------HHHHHHHHH
Confidence 8887765433332 33447889999999999999999999999998764332 223344566
Q ss_pred HHHhhcCCCHHHHHHHHHHH
Q 035507 649 IENLQSHDNNEIHEKSVKIL 668 (684)
Q Consensus 649 L~~L~~~~~~~i~~~a~~ii 668 (684)
++.|..+++.++...|....
T Consensus 640 l~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 640 LETLSSDQELDVRYRAILAF 659 (759)
T ss_pred HHHhccCcccchhHHHHHHH
Confidence 67776677777765555443
No 83
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.31 E-value=5.7e-05 Score=81.04 Aligned_cols=333 Identities=15% Similarity=0.116 Sum_probs=201.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC--CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIES--MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~--~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
+..+...|++..+.++..|+..+..++---. ..-+.+...|+ .|.+.|.... |++.--.+.++..|.....-.+.
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey-pEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc-HHHHHHHHHHHHHHHHhcccccc
Confidence 4455666778889999999887766543211 12234444555 3677887666 88877766666666652111111
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC---chhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC---RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLC 405 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~---r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~ 405 (684)
.---.+++|.|..+|++....|+++++..++.||...+++ |+-+. +--.|+.+| ...+.+++++|..+++.++
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelL-kahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELL-KAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHHHHHHHHHHHhhhhHHH
Confidence 1112478999999999999999999999999999887763 22111 122455666 5567899999999999998
Q ss_pred cCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHH
Q 035507 406 RGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTV 485 (684)
Q Consensus 406 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 485 (684)
+.-.+ ..++..|+.-|...+...+....-+++-.+ ..+ --..++|.|+.=-..++..++.-.++++
T Consensus 954 kaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVa-E~c-------~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 954 KAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVA-ETC-------GPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred HhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhh-hhc-------CchhhhHHHHhhccCchhHHHHhHHHHH
Confidence 77411 234444444444333333333222333222 110 0113677777777788899999999988
Q ss_pred HHHHcCChhh-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc-------c
Q 035507 486 GNIVMGDDFQ-TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ-------N 557 (684)
Q Consensus 486 ~nl~~~~~~~-~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~-------~ 557 (684)
+.+-....+. .+.+. .+.|.|-..|.+. |..-|..|+.++..++-+.+. .|....++++|. .
T Consensus 1020 sf~FeyigemskdYiy--av~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg~~g-------~g~eda~iHLLN~iWpNIle 1089 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYIY--AVTPLLEDALMDR-DLVHRQTAMNVIKHLALGVPG-------TGCEDALIHLLNLIWPNILE 1089 (1172)
T ss_pred HHHHHHHHHHhhhHHH--HhhHHHHHhhccc-cHHHHHHHHHHHHHHhcCCCC-------cCcHHHHHHHHHHhhhhhcC
Confidence 8876533322 22232 3678888888888 899999999999999875321 133344444432 3
Q ss_pred CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507 558 AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 558 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~ 623 (684)
..+.+......++-.+...-.+.. .+....+-|-++...|+.. .|.+.+.+..+.+.
T Consensus 1090 ~sPhviqa~~e~~eg~r~~Lg~~~--------~~~Y~~QGLFHParkVR~~-yw~vyn~my~~~~d 1146 (1172)
T KOG0213|consen 1090 TSPHVIQAFDEAMEGLRVALGPQA--------MLKYCLQGLFHPARKVRKR-YWTVYNSMYHGSQD 1146 (1172)
T ss_pred CChHHHHHHHHHHHHHHHHhchHH--------HHHHHHHhccCcHHHHHHH-HHHHHHhHhhcccc
Confidence 466666555555444433212211 2334445566666666654 45555666655443
No 84
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=3.9e-06 Score=86.71 Aligned_cols=304 Identities=17% Similarity=0.249 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 035507 264 NLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKL 342 (684)
Q Consensus 264 ~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~l 342 (684)
+.+..|+..+-+-.+++- -.+.-+.+..+++.|+++|+.++ ..+..-+...+.|..-.-+.-+..+...|+|..|+.+
T Consensus 403 ~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~ 481 (743)
T COG5369 403 DLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL 481 (743)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence 444444443333333322 22334556778999999999877 6778888888888887777888899999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCCCC-chhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCC--CChhhh---
Q 035507 343 LASPSDDVREQAVWALGNVAADSSGC-RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR--PLFDQV--- 416 (684)
Q Consensus 343 L~~~~~~v~~~a~~~L~nLa~~~~~~-r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~--~~~~~~--- 416 (684)
+.+.+..+|....|.+..+.....+. +=..+..-++..++... +++.-.++..+...|.|+..+... ......
T Consensus 482 v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~ 560 (743)
T COG5369 482 VMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKA 560 (743)
T ss_pred hhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEec
Confidence 99999999999999999998655432 22344555678888888 778888999999999999875421 111111
Q ss_pred ---hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh-chHHHHHHhc----CC-------CCcccHhHH
Q 035507 417 ---RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA-GVCGRLVELL----GH-------PSPSVLTPA 481 (684)
Q Consensus 417 ---~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~-g~l~~L~~lL----~~-------~~~~v~~~a 481 (684)
.-....+.+.+...+|-.....|..+.+++ ..++...+.+.+. .++..+..+| +. ....+..+-
T Consensus 561 ~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~a-a~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~ 639 (743)
T COG5369 561 TPRRYLFKRLIDKYEENNPMEILEGCYILVRNA-ACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPI 639 (743)
T ss_pred ChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH-hccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcc
Confidence 235556677777788877777889998888 5555554444443 3444444433 22 122333444
Q ss_pred HHHHHHHHcCChhhHHHHHhcCChHHHHHHhc--cCCChhHHHHHHHHHHHHhc---C------ChHHHHHHHHhCCHHH
Q 035507 482 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLI--HNHKNSIKKEVSWIISNIAC---G------NREQIQAVIDAGLIGP 550 (684)
Q Consensus 482 l~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~g~l~~ 550 (684)
.....++....+...+.+... |.+-..=. ...+.++-.+..|.+.|+.- + +.+.++.+.+.|+-+.
T Consensus 640 s~~~v~l~e~~d~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~ 716 (743)
T COG5369 640 SYTIVNLSENSDKFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREW 716 (743)
T ss_pred ceeeecccccccccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHH
Confidence 444445544333222222110 22211111 11145677788898888743 2 2356777778888888
Q ss_pred HHHHhccCCHhHHHHHHHHHHHh
Q 035507 551 LVNLLQNAEFDIKEEAAWAISNA 573 (684)
Q Consensus 551 Li~ll~~~~~~v~~~a~~aL~nl 573 (684)
+..+....++.+++.+-.||.++
T Consensus 717 l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 717 LVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHhccCcHHHHHHHHHHHHhh
Confidence 88888888999999999999887
No 85
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.31 E-value=5.7e-05 Score=79.43 Aligned_cols=335 Identities=14% Similarity=0.093 Sum_probs=203.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHh---cCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLL---SIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSEN 326 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~---s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 326 (684)
.+..+++.|++..++++..|+.....++ +.. .....+...|. .|.+.|.... |++.--.+.++..|.+...-.
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c-~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC-GETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc-chHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhhccc
Confidence 5677888899999999999887655443 322 12334444554 3566666555 888777777776666521111
Q ss_pred HHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC---chhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHH
Q 035507 327 TKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC---RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSN 403 (684)
Q Consensus 327 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~---r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~n 403 (684)
.-.---.|++|.|..+|.+....+..+.+..++.||..+|+. |+-+. +--.|+..| .+.+.+++++|..+++.
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L-ks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL-KSWNKEIRRNATETFGC 756 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHhhHHHHHhhhhhhhh
Confidence 111112588999999999999999999999999999888763 11111 122455666 66788999999999999
Q ss_pred hccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHH
Q 035507 404 LCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALW 483 (684)
Q Consensus 404 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~ 483 (684)
+++.-.+ ..++..|+.-|...+...+....-+++-.+ .. .--..++|.|+.=-..++..++.-.++
T Consensus 757 Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVa-e~-------cgpfsVlP~lm~dY~TPe~nVQnGvLk 822 (975)
T COG5181 757 ISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVA-EY-------CGPFSVLPTLMSDYETPEANVQNGVLK 822 (975)
T ss_pred HHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhH-hh-------cCchhhHHHHHhcccCchhHHHHhHHH
Confidence 9877411 334455554444444333333333333322 10 011136777777777788899998888
Q ss_pred HHHHHHcCChhh-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHH--HHHHHHhCCHHHHHHHhccCCH
Q 035507 484 TVGNIVMGDDFQ-TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQ--IQAVIDAGLIGPLVNLLQNAEF 560 (684)
Q Consensus 484 ~L~nl~~~~~~~-~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~--~~~l~~~g~l~~Li~ll~~~~~ 560 (684)
+++.+-.....+ .+.+. .+.|.|-..|.+. |+.-|..|..++..++-+.+.. ...++. ++..|..-+-...+
T Consensus 823 am~fmFeyig~~s~dYvy--~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sP 897 (975)
T COG5181 823 AMCFMFEYIGQASLDYVY--SITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSP 897 (975)
T ss_pred HHHHHHHHHHHHHHHHHH--HhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCc
Confidence 888776433322 22332 4678888888888 9999999999999997643221 111111 23333333334556
Q ss_pred hHHH---HHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507 561 DIKE---EAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 561 ~v~~---~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~ 623 (684)
.+.. ++..++.+.... ... +..+.+-|-++...++ ...|...+++.+-...
T Consensus 898 hvi~~~~Eg~e~~~~~lg~--g~~---------m~Yv~qGLFHPs~~VR-k~ywtvyn~myv~~~d 951 (975)
T COG5181 898 HVIQSFDEGMESFATVLGS--GAM---------MKYVQQGLFHPSSTVR-KRYWTVYNIMYVFDSD 951 (975)
T ss_pred HHHHHHHHHHHHHHHHhcc--HHH---------HHHHHHhccCchHHHH-HHHHHHHhhhhhcccc
Confidence 5554 445555555432 223 3334444556665554 5667777777765444
No 86
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.25 E-value=0.00041 Score=72.65 Aligned_cols=250 Identities=29% Similarity=0.328 Sum_probs=173.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
..++.+.+.+.+.++.++..|++.+..+-. .-.++.+..++.+.+ +.+|..|+.+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDED-PRVRDAAADALGELGD------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCC-HHHHHHHHHHHHccCC-------
Confidence 367889999999999999999998666432 236889999999988 8999999998887765
Q ss_pred HHHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCc-----------hHHHHH
Q 035507 329 VVIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTE-----------LSMLRI 396 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~-----------~~v~~~ 396 (684)
...++.|+.++. +++..+|..|.++|+.+-.. ..+.+++..+.+... ..++..
T Consensus 104 ----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 104 ----PEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred ----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 246899999998 59999999999999998322 136778877744321 134555
Q ss_pred HHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcc
Q 035507 397 ATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPS 476 (684)
Q Consensus 397 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~ 476 (684)
+...+..+-.. ..++.+..++.+.+..++..+..+++.+. ... ..+.+.+...+.+++..
T Consensus 169 a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~-~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 169 AAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLG-SEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhh-cch---------hhHHHHHHHHhcCCCHH
Confidence 55555554332 45677778888888888888888888887 332 23557778888888888
Q ss_pred cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc
Q 035507 477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ 556 (684)
Q Consensus 477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~ 556 (684)
++..++.+++.+-... ..+.+...+... +..++..+...+... .. ......+...+.
T Consensus 229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDEE-----------AVDALAKALEDE-DVILALLAAAALGAL--DL---------AEAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcch-----------hHHHHHHHHhcc-chHHHHHHHHHhccc--Cc---------hhhHHHHHHHhh
Confidence 8888888887764322 345666667666 555555554444411 11 112445555566
Q ss_pred cCCHhHHHHHHHHHHHhhc
Q 035507 557 NAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 557 ~~~~~v~~~a~~aL~nl~~ 575 (684)
+.+..++..+..++.....
T Consensus 286 ~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 286 DEANAVRLEAALALGQIGQ 304 (335)
T ss_pred cchhhHHHHHHHHHHhhcc
Confidence 6677777777777766654
No 87
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=8e-05 Score=77.83 Aligned_cols=319 Identities=12% Similarity=0.086 Sum_probs=199.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
+.+++++......|..++..|+..+.+++....... ...-..+...+.++..+++ ..++. ++..+-.+..+-...+.
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v-~~~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV-LVYFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA 160 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc-ccchHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence 467888999999999999999888887765433111 1112234556667666655 45554 44444444431111111
Q ss_pred -HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh-cCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507 329 -VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS-EGALIPLLAQLNEHTELSMLRIATTTLSNLCR 406 (684)
Q Consensus 329 -~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~-~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~ 406 (684)
.+-=.++||.|-.-+...++..|...+.-|.-+-..+ . .+++.- ...++.|+..| .++..+++..+-.+++++..
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-D-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-c-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence 1221234555555555578888888877777664333 2 344332 22456667777 67778888877777777765
Q ss_pred CC-CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcc-cHhHHHHH
Q 035507 407 GK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPS-VLTPALWT 484 (684)
Q Consensus 407 ~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~-v~~~al~~ 484 (684)
.- ..+........++.++..++++++.++..|+.-+..+. .-... .-...-+|++..+++++.+..+. ++..|...
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV-~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~ 315 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFV-KIPGR-DLLLYLSGILTAILPCLSDTEEMSIKEYAQMV 315 (675)
T ss_pred HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHh-cCCCc-chhhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence 54 33333356788899999999999999988877666665 22222 22234457888888888877664 44444333
Q ss_pred HHHHHc--CChhhHHHHHhc-CChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507 485 VGNIVM--GDDFQTQCIINH-GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD 561 (684)
Q Consensus 485 L~nl~~--~~~~~~~~~i~~-g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~ 561 (684)
-+.+.. +.+...+. ++. .++..+.+.+.++ ..+.|.++..-+..+-...+.+.- .....+++.|+.-|++.+.+
T Consensus 316 n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~sd~ 392 (675)
T KOG0212|consen 316 NGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDRSDE 392 (675)
T ss_pred HHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCchhH
Confidence 222221 11111111 332 3567888888888 888888887666666554444433 33456899999999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 035507 562 IKEEAAWAISNASSRGT 578 (684)
Q Consensus 562 v~~~a~~aL~nl~~~~~ 578 (684)
+...+...+.+++...+
T Consensus 393 vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 99999999999998543
No 88
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.00025 Score=69.33 Aligned_cols=301 Identities=13% Similarity=0.134 Sum_probs=197.9
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHH--HHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507 247 KLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRF--VEFLMREDYPQLQFQAAWALTNIASGTS 324 (684)
Q Consensus 247 ~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~L--v~lL~~~~~~~v~~~A~~~L~~l~~~~~ 324 (684)
+.+.++.++..+..+|.++..+|...+..++.. +.....+.++.....+ ..+-...+ .-.|......+..|.+-++
T Consensus 126 NaeilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSp 203 (524)
T KOG4413|consen 126 NAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISP 203 (524)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCH
Confidence 446788899999999999999999999886544 3455666666655443 23333334 4677778888999999899
Q ss_pred hhHHHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC-CchHHHHHHHHHHH
Q 035507 325 ENTKVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH-TELSMLRIATTTLS 402 (684)
Q Consensus 325 ~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~-~~~~v~~~a~~~L~ 402 (684)
+.....-..|.+..|..=|.. .+.-|+.+++.....++..... |+.+.+.|.+..+.+.+... +++--.-.++....
T Consensus 204 esaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfg 282 (524)
T KOG4413|consen 204 ESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFG 282 (524)
T ss_pred HHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHH
Confidence 998888899999988887766 7778889999999999866543 77888888888888877432 23322222333333
Q ss_pred HhccCC------CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhch--HHHHHHhcCC-C
Q 035507 403 NLCRGK------PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGV--CGRLVELLGH-P 473 (684)
Q Consensus 403 nL~~~~------~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~--l~~L~~lL~~-~ 473 (684)
.+.... +........-.+.....++..+|++.+..|+.+++.+. .+.+..+.+.+.|- ...++.-..+ .
T Consensus 283 kffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilG--SnteGadlllkTgppaaehllarafdqn 360 (524)
T KOG4413|consen 283 KFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILG--SNTEGADLLLKTGPPAAEHLLARAFDQN 360 (524)
T ss_pred HHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhcc--CCcchhHHHhccCChHHHHHHHHHhccc
Confidence 332221 11111112333444566778899999999999999998 45556666666653 3444433333 3
Q ss_pred CcccHhHHHHHHHHHHcCC---hhh----------HHHHHhc-------CChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 474 SPSVLTPALWTVGNIVMGD---DFQ----------TQCIINH-------GAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 474 ~~~v~~~al~~L~nl~~~~---~~~----------~~~~i~~-------g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
...-+..++++|.+++... +++ +..+.++ .-+..+..+++.+ .++++-.+..++..++.
T Consensus 361 ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 361 AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAA 439 (524)
T ss_pred ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHc
Confidence 3445678889999887432 111 1111111 2355677788888 89999999999999988
Q ss_pred CChHHHHHHHHhCCHHHHHH
Q 035507 534 GNREQIQAVIDAGLIGPLVN 553 (684)
Q Consensus 534 ~~~~~~~~l~~~g~l~~Li~ 553 (684)
..=.+...+.+.+++....+
T Consensus 440 qPWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 440 QPWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred CcHHHHHHhcCccceeeecc
Confidence 65444444445555544443
No 89
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.19 E-value=0.00021 Score=74.85 Aligned_cols=250 Identities=24% Similarity=0.261 Sum_probs=176.1
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507 291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370 (684)
Q Consensus 291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~ 370 (684)
..++.+++++.+.+ ..++..|++.++.+.. ..+++.+..++.+.++.+|..|+.+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD------- 103 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------
Confidence 36788999999986 8999999999877765 2568999999999999999999999998721
Q ss_pred hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcH------------HHHHHH
Q 035507 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDE------------QVLTDA 438 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~------------~v~~~a 438 (684)
...+++++..+..+.+..++..+.++|..+-... .+..++..+.+... .++..+
T Consensus 104 ----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 ----PEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 1247899999966789999999999999886552 35566666665442 345555
Q ss_pred HHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCCh
Q 035507 439 CWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKN 518 (684)
Q Consensus 439 l~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~ 518 (684)
..+++.+. + ...++.+...+.+....++..|..+++.+.... ..+.+.+...+.+. +.
T Consensus 170 ~~~l~~~~-~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~ 227 (335)
T COG1413 170 AEALGELG-D-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SL 227 (335)
T ss_pred HHHHHHcC-C-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CH
Confidence 55555544 1 134677888888888888999999998887655 23556777888887 88
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 035507 519 SIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL 598 (684)
Q Consensus 519 ~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL 598 (684)
.+|..++.+++.+-... ..+.+...+...+..++..+..+....- .. .....+...+
T Consensus 228 ~vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~---------~~~~~l~~~~ 284 (335)
T COG1413 228 EVRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAALGALD---LA---------EAALPLLLLL 284 (335)
T ss_pred HHHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHhcccC---ch---------hhHHHHHHHh
Confidence 89988888888774432 4566677777777777666665555111 01 1133444455
Q ss_pred cCCChHHHHHHHHHHHHHHh
Q 035507 599 QCADPKIVTVCLEGLENILK 618 (684)
Q Consensus 599 ~~~~~~v~~~al~~L~~il~ 618 (684)
.+.+..+...+...+..+..
T Consensus 285 ~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 285 IDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hcchhhHHHHHHHHHHhhcc
Confidence 55566666666655555443
No 90
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0026 Score=68.52 Aligned_cols=325 Identities=18% Similarity=0.171 Sum_probs=195.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507 252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI 331 (684)
Q Consensus 252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~ 331 (684)
-+-+++|+++--..++-+-..+.-++..+.+..+. ++..+..=|.+.+ +.....|+.+++|+.+ -+.+..+.
T Consensus 77 mEaV~LLss~kysEKqIGYl~is~L~n~n~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~ 148 (938)
T KOG1077|consen 77 MEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFA 148 (938)
T ss_pred HHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhh
Confidence 34566666654444444444444444333222222 2233334444555 7888889999999987 34444433
Q ss_pred hcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507 332 EHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 332 ~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
.-|+ ++|-+ ..+-|+..|+.+|..|-+.+|. .+...+-...++.+| ++.+-.+...+...+--++...|
T Consensus 149 --~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 149 --DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred --hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCC
Confidence 1234 55545 3467899999999999888765 333345677888888 55556667777777777777765
Q ss_pred CCChhhhhchHHHHHHHhc-------------CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC--C
Q 035507 410 RPLFDQVRPALPALAQLIH-------------SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP--S 474 (684)
Q Consensus 410 ~~~~~~~~~~l~~L~~lL~-------------~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~--~ 474 (684)
..-......++..|..... -+.|..+..+++.|.+.-...++.....+. .++..++...+.+ .
T Consensus 220 ~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~ 297 (938)
T KOG1077|consen 220 ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKS 297 (938)
T ss_pred HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccc
Confidence 4444333444444433332 145888999999998876222222332222 3455555555421 1
Q ss_pred c-----ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHH
Q 035507 475 P-----SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIG 549 (684)
Q Consensus 475 ~-----~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~ 549 (684)
. ..+...+.-.-+++.+-+..-+.+. ..+..|-+++.+. ...+|.-|...++.++... ..+..+-.. ..
T Consensus 298 k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~-~s~davK~h--~d 371 (938)
T KOG1077|consen 298 KKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSE-FSIDAVKKH--QD 371 (938)
T ss_pred cchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhcc-chHHHHHHH--HH
Confidence 1 2222333333444444443333333 3677888899888 8899999999999988753 233333333 67
Q ss_pred HHHHHhc-cCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHH
Q 035507 550 PLVNLLQ-NAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVC 609 (684)
Q Consensus 550 ~Li~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~a 609 (684)
.++..|. ..|..+|+.|+..|..++... +++. ++..|.++|.+.|+.+++-.
T Consensus 372 ~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~-----IV~elLqYL~tAd~sireei 424 (938)
T KOG1077|consen 372 TIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQ-----IVAELLQYLETADYSIREEI 424 (938)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhchh---hHHH-----HHHHHHHHHhhcchHHHHHH
Confidence 7788888 569999999999999998644 3333 45577788887877766543
No 91
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00094 Score=72.70 Aligned_cols=325 Identities=19% Similarity=0.230 Sum_probs=195.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.+..+-+.|+..|+.+|-.|++.+..+ .-+.+..+ ++-.+-+...+.. +.+|..|+.++..+-+-+++....
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsI---Rvp~IaPI----~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSI---RVPMIAPI----MLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhc---chhhHHHH----HHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHHH
Confidence 566777788888888777666655442 11111111 1222334445566 899999999999999988877775
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK- 408 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~- 408 (684)
+. ..+-.+|.+.++-|.-.|+.|.-.+|-+.-. .+ .+-...+.+++. +-+.=-+..++..|...|+..
T Consensus 181 L~-----e~I~~LLaD~splVvgsAv~AF~evCPerld---LI--HknyrklC~ll~-dvdeWgQvvlI~mL~RYAR~~l 249 (968)
T KOG1060|consen 181 LE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERLD---LI--HKNYRKLCRLLP-DVDEWGQVVLINMLTRYARHQL 249 (968)
T ss_pred HH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHHH---Hh--hHHHHHHHhhcc-chhhhhHHHHHHHHHHHHHhcC
Confidence 43 4455677888899999999999988754311 11 122334444442 111111222333333334433
Q ss_pred CCCC----------------------------hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh
Q 035507 409 PRPL----------------------------FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA 460 (684)
Q Consensus 409 ~~~~----------------------------~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~ 460 (684)
+.+. .....-++...-.++.+.++.+..+++.+..+++ .. ... .
T Consensus 250 ~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA-P~--~~~-----~ 321 (968)
T KOG1060|consen 250 PDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA-PK--NQV-----T 321 (968)
T ss_pred CCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC-CH--HHH-----H
Confidence 2110 1111334455556778899999999999999999 32 222 2
Q ss_pred chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh-ccCCChhHHHHHHHHHHHHhcCChHHH
Q 035507 461 GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL-IHNHKNSIKKEVSWIISNIACGNREQI 539 (684)
Q Consensus 461 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~ 539 (684)
.++..|+.+|.++ ..++...+..|..++...+.. +-|.+-.+. .+.+...++.-=..+|++++... ++
T Consensus 322 ~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~l--------F~P~lKsFfv~ssDp~~vk~lKleiLs~La~es--ni 390 (968)
T KOG1060|consen 322 KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTL--------FEPHLKSFFVRSSDPTQVKILKLEILSNLANES--NI 390 (968)
T ss_pred HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhh--------hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc--cH
Confidence 4577889988764 457777888887777655432 224444443 22213345555566777776531 11
Q ss_pred HHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 540 ~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
. .+++-+...+.+.+.++...|..||+.++..... +...++..|+.++.+.+..|+..+...+..+++.
T Consensus 391 ~-----~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s------v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 391 S-----EILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS------VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred H-----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc------hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 1 1455666667777777777777888877653211 2334677788888887888888888888877776
Q ss_pred cccc
Q 035507 620 GEAE 623 (684)
Q Consensus 620 ~~~~ 623 (684)
.+..
T Consensus 460 ~p~~ 463 (968)
T KOG1060|consen 460 DPAE 463 (968)
T ss_pred ChHH
Confidence 5543
No 92
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=98.16 E-value=1.5e-06 Score=71.71 Aligned_cols=74 Identities=30% Similarity=0.320 Sum_probs=46.5
Q ss_pred chhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCCCCCCC--CCCCCCccchhhhccHHHHHHHhcCCCHHHHHHHHH
Q 035507 198 EHSAWKDDLNTTIQQVNLKRE-SFIKKRREGLQSQSYLP--SALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATT 271 (684)
Q Consensus 198 ~~~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~ 271 (684)
.+...+.|.+.+|+|||+||+ +|.|||++........+ ...............++.++..+.|+|+..|+.|+.
T Consensus 20 ~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 20 AEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAGVNSDDPEVQLEATQ 96 (97)
T ss_dssp HHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHhcCCCCHHHHHHhhC
Confidence 345567889999999999999 99999998754433221 000001112222346789999999999999999975
No 93
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00064 Score=75.73 Aligned_cols=304 Identities=13% Similarity=0.174 Sum_probs=196.9
Q ss_pred hhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507 247 KLEILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 247 ~~~~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
-++.++.+...+.+ +++.+|.-|+..+..+ ....+-...+++.|++..|+++|.+. |..|..++.+|..+++ +++
T Consensus 1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~-Tan~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLA-TANKECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred hhcccHHHHHHHHHcCCchHHHHHHHHHHHH-hcccHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcH
Confidence 35667777777774 6788999998888664 44456788899999999999999764 5899999999999999 778
Q ss_pred hHHHHHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCC---CCCchhHhh----------cCCHHHHHHHhccC-Cc
Q 035507 326 NTKVVIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADS---SGCRDLVLS----------EGALIPLLAQLNEH-TE 390 (684)
Q Consensus 326 ~~~~i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~---~~~r~~i~~----------~g~l~~Ll~~L~~~-~~ 390 (684)
....-.++|++..+..++- +.++..|.+++..++.+..+. |..+-.+.. ...-+..+..+... .+
T Consensus 1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence 8888888999888888664 467899999999999998654 222111111 00112333333211 11
Q ss_pred h------HHHHHHHHHHHHhcc----CC---C--------------------------------------CCChhhhhch
Q 035507 391 L------SMLRIATTTLSNLCR----GK---P--------------------------------------RPLFDQVRPA 419 (684)
Q Consensus 391 ~------~v~~~a~~~L~nL~~----~~---~--------------------------------------~~~~~~~~~~ 419 (684)
+ ..+......+..+.. .. | ..+.....+.
T Consensus 1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence 1 112222222222111 10 0 1111233445
Q ss_pred HHHHHHHhcCCcH--HHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHH
Q 035507 420 LPALAQLIHSNDE--QVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ 497 (684)
Q Consensus 420 l~~L~~lL~~~d~--~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 497 (684)
+..+..++..+++ ....-...++..+. ...+...+.+=..|.+|.++..+...+..+-..|++.|..++... ...+
T Consensus 2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~-r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~~ 2082 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELV-RHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCCD 2082 (2235)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHH-HhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHHH
Confidence 5555556654332 22222222333333 344445555556699999999998888888899999999998754 3666
Q ss_pred HHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccC
Q 035507 498 CIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNA 558 (684)
Q Consensus 498 ~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~ 558 (684)
++.....+..++..+... +...--|+.+|..+.. ...+-.....+.|++|.|+.+|+..
T Consensus 2083 AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 676667777788877654 3445578888887765 4456666778899999999999753
No 94
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0021 Score=70.13 Aligned_cols=171 Identities=15% Similarity=0.163 Sum_probs=121.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507 252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI 331 (684)
Q Consensus 252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~ 331 (684)
..|+.+|.|+....+..|+.-+..+...... .. ...|..|+...+.+ .+++...---|...|...++-.-
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-vS-----~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLAL--- 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-VS-----LLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLAL--- 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-HH-----HHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCcee---
Confidence 5788999999889999999877776655443 22 25678888888877 88888777777777764443211
Q ss_pred hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC
Q 035507 332 EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP 411 (684)
Q Consensus 332 ~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~ 411 (684)
=-|..+-+-|+++++.+|..|+++|+.| |--++ .+++-.-++.+..++.+-+++.|+.|+-.|-+-++..
T Consensus 108 --LSIntfQk~L~DpN~LiRasALRvlSsI-------Rvp~I-aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~ 177 (968)
T KOG1060|consen 108 --LSINTFQKALKDPNQLIRASALRVLSSI-------RVPMI-APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ 177 (968)
T ss_pred --eeHHHHHhhhcCCcHHHHHHHHHHHHhc-------chhhH-HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh
Confidence 1377888889999999999999999887 22111 1111222233346778899999999998887765432
Q ss_pred ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 412 LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 412 ~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
. ..++..+-.+|.+.++-|.-.|+.|+-.+|
T Consensus 178 k----~qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 178 K----DQLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred H----HHHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 2 356667777888888999999988888777
No 95
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.09 E-value=0.00034 Score=73.05 Aligned_cols=339 Identities=14% Similarity=0.119 Sum_probs=204.0
Q ss_pred HHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC--CChH
Q 035507 272 QFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS--PSDD 349 (684)
Q Consensus 272 ~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--~~~~ 349 (684)
.|.+++...+.....+.-....+.+..++-+++ .+++..|.+++..+.. +++....+.+.+.--.++.-|.. .+..
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 344445444433333333344555555555556 7999999999999998 67777777777754444555554 4456
Q ss_pred HHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC
Q 035507 350 VREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS 429 (684)
Q Consensus 350 v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~ 429 (684)
-|++|+..+..+......... ...|.+..++... .+.+...+..|+.+|..++-.. +......|++..+.+.+.+
T Consensus 84 ER~QALkliR~~l~~~~~~~~--~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPKE--IPRGVVRALVAIA-EHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHHhcCCccc--CCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHh
Confidence 788999999888765322211 3567788888888 5577789999999999998874 4455668999999998887
Q ss_pred CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-------Cc--ccHhHHHHHHHHHHcCChhhHHHHH
Q 035507 430 NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-------SP--SVLTPALWTVGNIVMGDDFQTQCII 500 (684)
Q Consensus 430 ~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-------~~--~v~~~al~~L~nl~~~~~~~~~~~i 500 (684)
+..++...++.++.++. + .+..++.+...--++.++.-+.+. +. .....+..++..+...-+...-.-.
T Consensus 159 ~~~~~~~~l~~~lL~lL-d-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~ 236 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLL-D-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM 236 (371)
T ss_pred ccHhHHHHHHHHHHHHh-C-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence 76678899999999999 4 444444333322244444433322 11 1334455555555544332221111
Q ss_pred h-cCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHH------HhCCHHHHHHHh---ccCCHhHHHHHHHH
Q 035507 501 N-HGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVI------DAGLIGPLVNLL---QNAEFDIKEEAAWA 569 (684)
Q Consensus 501 ~-~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~------~~g~l~~Li~ll---~~~~~~v~~~a~~a 569 (684)
+ ...+..|+..|..+ .+++|+.....+..+.. ..+....... ..|-+..--++- .......... ..-
T Consensus 237 ~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~-~~~ 314 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHR-SSK 314 (371)
T ss_pred CCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcc-ccc
Confidence 2 25788899999888 88899999988888865 2221111111 111110000000 0000000000 000
Q ss_pred HHHhhcCCCHHHHHHHHHCCChHHHHhhccCC-ChHHHHHHHHHHHHHHhccc
Q 035507 570 ISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA-DPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 570 L~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~-~~~v~~~al~~L~~il~~~~ 621 (684)
-.++......--...+++.|.++.|+++.... ++.+...|.-.|..+++.+.
T Consensus 315 ~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la~ 367 (371)
T PF14664_consen 315 RPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLAS 367 (371)
T ss_pred cccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 01111100011234467999999999999987 88899999999999887653
No 96
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.08 E-value=5.4e-06 Score=56.71 Aligned_cols=41 Identities=46% Similarity=0.860 Sum_probs=38.3
Q ss_pred CchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhC
Q 035507 323 TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAA 363 (684)
Q Consensus 323 ~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~ 363 (684)
+++++..+++.|++|.|+.+|.++++.+++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999973
No 97
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.00 E-value=1.1e-05 Score=55.08 Aligned_cols=40 Identities=28% Similarity=0.569 Sum_probs=37.2
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 493 DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 493 ~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
+++.+.+++.|++|.|+.+|.++ ++.++++|+|+|+||++
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 56788999999999999999988 99999999999999974
No 98
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.99 E-value=0.00021 Score=80.96 Aligned_cols=270 Identities=17% Similarity=0.167 Sum_probs=178.3
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC---Cchh
Q 035507 251 LPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASG---TSEN 326 (684)
Q Consensus 251 l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~---~~~~ 326 (684)
++.+...+.+ ...+.+.+|+..|..+...-. ++..-.-++|.++.++.++. .+||..|+.+|+.+... -+..
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcc
Confidence 4444444443 345778888888887654432 22233458999999999988 89999999999988762 2222
Q ss_pred HHHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhC------------------CCCCC---chhHhh--c----CCH
Q 035507 327 TKVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAA------------------DSSGC---RDLVLS--E----GAL 378 (684)
Q Consensus 327 ~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~------------------~~~~~---r~~i~~--~----g~l 378 (684)
-..+...-++|.|-.++.+ ....+|..-+..|+.||. +.++. ...-.+ . ..+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 2233334567888888777 444555555555655552 11111 000000 0 113
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHH
Q 035507 379 IPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVI 458 (684)
Q Consensus 379 ~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~ 458 (684)
...+..|..++++-+++..+..|.-||..-... ..-.-+++.|...|++.|+.++..-...+..++ -. -. ..-+
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvs-i~-VG--~rs~ 653 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVS-IF-VG--WRSV 653 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceE-EE-Ee--eeeH
Confidence 333333446667788888888888888654111 112456788999999999999988888887666 11 11 1114
Q ss_pred HhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 459 EAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 459 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
+..++|.|.+-|.++.+.|...|+.++.-++...--....+++ +++....+|-++ +.-+|+.++.++..++.
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 5578899999999999999999999999998755434444444 777788888899 99999999999988865
No 99
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0061 Score=65.79 Aligned_cols=295 Identities=12% Similarity=0.122 Sum_probs=177.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
.+..+.+.|.|.|+..+.-|+.++.++-+.+. .+.+. .-+| ++|-+++ .+-++..|+-||..+-..+++.
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~re~--~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl-- 182 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSREM--AEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL-- 182 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccHhH--HHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence 45566677778888888889999988765532 22111 1233 5554443 3578888999999998865542
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc-----cC-----------CchH
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN-----EH-----------TELS 392 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~-----~~-----------~~~~ 392 (684)
+-..+....++.+|.+.+-.|...+...+..|+...|+.. .+.++.-+..|. .. +.+=
T Consensus 183 -~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-----k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 183 -VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY-----KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred -cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH-----hhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 2223567889999998888888888888888887665421 122333222221 11 1233
Q ss_pred HHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCc-----H-----HHHHHHHHHHHhhccCCChHHHHHHHHhch
Q 035507 393 MLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSND-----E-----QVLTDACWALFGLSGDRNNDKIQAVIEAGV 462 (684)
Q Consensus 393 v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d-----~-----~v~~~al~~L~~L~~~~~~~~~~~~~~~g~ 462 (684)
+...++.+|.++ ++..+..........+-.+|...+ . ..+..++.-.-+++ ..-+..-+.+. ..
T Consensus 257 L~vKl~rlLq~~---p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~-~h~D~e~~ll~--~~ 330 (938)
T KOG1077|consen 257 LQVKLLRLLQIY---PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA-IHLDSEPELLS--RA 330 (938)
T ss_pred HHHHHHHHHHhC---CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH-HHcCCcHHHHH--HH
Confidence 444555555555 222222233333344444443211 1 11112222222222 11111112222 35
Q ss_pred HHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507 463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV 542 (684)
Q Consensus 463 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 542 (684)
+..|.+++.+.+..+|.-|+..+..++.... ..+.+-.+ .+.++..|....|..+|+.|+..|..+|... +..
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~--Nak-- 403 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS--NAK-- 403 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh--hHH--
Confidence 7789999999999999999999999998654 33444433 7788888884448999999999999998732 222
Q ss_pred HHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 543 IDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 543 ~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
.++.-|++.+...++.+|++.+--+.-++.
T Consensus 404 ---~IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 404 ---QIVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred ---HHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 146677888888898888877655555544
No 100
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=0.0016 Score=73.31 Aligned_cols=383 Identities=13% Similarity=0.089 Sum_probs=255.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 035507 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVV 330 (684)
Q Consensus 251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i 330 (684)
.+..-++-+..++.++..++..+.+++..-. ......++++.+.++..++. ..+|..|...+.++..--...- -
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d 312 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--D 312 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--h
Confidence 3444444556678888888888888776543 35677899999999999888 6999999999998887211111 2
Q ss_pred HhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC-
Q 035507 331 IEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP- 409 (684)
Q Consensus 331 ~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~- 409 (684)
....+.+.+++...+++..++.........++..-.. .......+++....+ .....+.+..+..-...++....
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCc
Confidence 2235678889998999999988887777776633211 111122355555555 44444555544444445554432
Q ss_pred -CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 410 -RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 410 -~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
.........++|.+..+..+.++.++.+.+.....+. .-.+ ....+ ....|.+...+++..+.++....+.+..+
T Consensus 389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~-p~~~--k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLS-PILP--KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred ccccccchhhhhHHHHHHHhcccchHHHHHhccccccC-ccCC--cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 2233334566899999999999999988887777765 3222 11011 13567778888888899999888888777
Q ss_pred HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHH
Q 035507 489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAW 568 (684)
Q Consensus 489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~ 568 (684)
-...+...........+|.+..+-... ...++.+..+.+-.++.... ..+++...-+.+...+.+....+++.|+.
T Consensus 465 ~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~ 540 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAAR 540 (759)
T ss_pred HhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 666655444555667888888888777 78899999888888876321 23333334455555566667889999998
Q ss_pred HHHHhhcCCC-HHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHH
Q 035507 569 AISNASSRGT-HDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLE 647 (684)
Q Consensus 569 aL~nl~~~~~-~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 647 (684)
.+..++.... ...+ ...++.+..+..+++...+...+.++..+..+..+. +-....++
T Consensus 541 ~l~~l~~~~G~~w~~-----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----------------i~~~~Llp 599 (759)
T KOG0211|consen 541 NLPALVETFGSEWAR-----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----------------ITCEDLLP 599 (759)
T ss_pred HhHHHHHHhCcchhH-----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----------------HHHHHHhH
Confidence 8888876332 1121 224666666666667788889999998777765432 22234467
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507 648 KIENLQSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 648 ~L~~L~~~~~~~i~~~a~~ii~~~f 672 (684)
.+..+..++.++|+-.+.+.+.++-
T Consensus 600 ~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 600 VFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred HHHHhccCCchhhhhhHHHHHHHHH
Confidence 7788888888888877777776653
No 101
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.97 E-value=0.0012 Score=69.06 Aligned_cols=315 Identities=16% Similarity=0.080 Sum_probs=192.0
Q ss_pred ChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC-CchHHHHHHHHHHHHhccCCCCCCh
Q 035507 335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH-TELSMLRIATTTLSNLCRGKPRPLF 413 (684)
Q Consensus 335 ~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~-~~~~v~~~a~~~L~nL~~~~~~~~~ 413 (684)
..+.+..++-+++.+++..+.+++..+..+.... ..+.+.+.-.-++..|... ....=+..|+..+..+..... ...
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc
Confidence 3444444444555999999999999988877553 4445555444455555433 344456688888888877632 222
Q ss_pred hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh
Q 035507 414 DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD 493 (684)
Q Consensus 414 ~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 493 (684)
....+++..++....+.++..+..++.++..++ -.++ +.+..+|++..+.+.+.++...+....+.++-.+.....
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~-l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELA-LLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-hhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 335778888999999999999999999999999 4443 457788999999999987666677778888888775443
Q ss_pred hhHHHHHhcCChHHHHHHhccC------CCh--hHHHHHHHHHHHHhcCChHHHHHHHHh-CCHHHHHHHhccCCHhHHH
Q 035507 494 FQTQCIINHGAVPCLLALLIHN------HKN--SIKKEVSWIISNIACGNREQIQAVIDA-GLIGPLVNLLQNAEFDIKE 564 (684)
Q Consensus 494 ~~~~~~i~~g~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-g~l~~Li~ll~~~~~~v~~ 564 (684)
.++.+...--+..++.-+.+. .+. +.-..+..++..+...-+.-+....+. ..+..|+..|..+++++|+
T Consensus 180 -tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~ 258 (371)
T PF14664_consen 180 -TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK 258 (371)
T ss_pred -hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence 444444333355555544332 022 234455566666654322211111121 4688899999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHH------HHHCCChHHHHhhc---cCCC---hHHHHHHHHHHHHHHhcccccccCCCCCcc
Q 035507 565 EAAWAISNASSRGTHDQIKY------LVTEGCIKPLCDLL---QCAD---PKIVTVCLEGLENILKVGEAEKNTDSDIGD 632 (684)
Q Consensus 565 ~a~~aL~nl~~~~~~~~~~~------l~~~g~l~~L~~lL---~~~~---~~v~~~al~~L~~il~~~~~~~~~~~~~~~ 632 (684)
.....+..+..-..+..... +...|-...-.++. .... |.....-...+.++..
T Consensus 259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a-------------- 324 (371)
T PF14664_consen 259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA-------------- 324 (371)
T ss_pred HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH--------------
Confidence 99999999886443321111 11111110000000 0000 0000001111111111
Q ss_pred hhHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 035507 633 INQFAQLVEEAEGLEKIENLQSHD-NNEIHEKSVKILETYW 672 (684)
Q Consensus 633 ~~~~~~~i~~~g~~~~L~~L~~~~-~~~i~~~a~~ii~~~f 672 (684)
-....+.++|.++.|..+..+. ++.+..+|.-++.+++
T Consensus 325 --Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 325 --LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred --HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 1345677899999999996655 8999999999988765
No 102
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.00019 Score=76.40 Aligned_cols=252 Identities=15% Similarity=0.136 Sum_probs=164.2
Q ss_pred hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHH---HHHHHHhccCC---C
Q 035507 336 VPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIA---TTTLSNLCRGK---P 409 (684)
Q Consensus 336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a---~~~L~nL~~~~---~ 409 (684)
...++.+..+.+..|+.+|+.+|..|.... ...+.+ .......+ .+.+..++..| +|..+|.+-.. .
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~~-----Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKAC-----YSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccc-cccHHH-----HHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 344777778888889999988888887632 222222 23444555 66777888776 55666666322 2
Q ss_pred CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHH
Q 035507 410 RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV 489 (684)
Q Consensus 410 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~ 489 (684)
.........++..+.+.+.+....|+..|..+|+.+- ..+++.++...+..++..+-..=... -+..++..=|..+
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~-~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewS 348 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE-QVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWS 348 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH-HhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcc
Confidence 2233345777888888999999999999999999888 77777777666655544222111100 0111111111111
Q ss_pred c-----------CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC
Q 035507 490 M-----------GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA 558 (684)
Q Consensus 490 ~-----------~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~ 558 (684)
. ..++....++.+|+-..++.-|.+. -.+||++|...++.++...|.... ..+..|++++.+.
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE 422 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE 422 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH
Confidence 1 1233455678889999999999888 889999999999999987666543 2577899999999
Q ss_pred CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHH
Q 035507 559 EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLE 611 (684)
Q Consensus 559 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~ 611 (684)
..++|..|..++..++.... ++...++.+++.|.+..++++.....
T Consensus 423 ~~~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~e 468 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRE 468 (823)
T ss_pred HHHHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999886421 12223555555555555555554333
No 103
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.90 E-value=0.00049 Score=67.17 Aligned_cols=223 Identities=14% Similarity=0.183 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhc-CChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhh-cCCHHHH
Q 035507 306 PQLQFQAAWALTNIASGTSENTKVVIEH-DAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLS-EGALIPL 381 (684)
Q Consensus 306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~-g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~-~g~l~~L 381 (684)
+-.+.-|+.++.++.. .++.|..+... ..-..++.++++ +...++.+.+.+++-++-.+. +.+.+-. ...+.-+
T Consensus 163 ~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~dl 240 (432)
T COG5231 163 FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHH
Confidence 5678889999999998 77888776643 455677777776 568899999999998875543 2222221 2235566
Q ss_pred HHHhccCCchHHHHHHHHHHHHhccCCCCCChhh--hhc-hHHHHHHHhc--CCcHHHHHHHHHHHHhhccCCC------
Q 035507 382 LAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQ--VRP-ALPALAQLIH--SNDEQVLTDACWALFGLSGDRN------ 450 (684)
Q Consensus 382 l~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~--~~~-~l~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~------ 450 (684)
+..........+.+-++..+.|++...|...... ..+ +.+..--++. -.|++++.+.-..=+.+. ...
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~-~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV-QNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH-hhhhhhhHH
Confidence 6666666778899999999999999554332221 122 3333333332 245555544333222222 110
Q ss_pred ------------------------hHHHHHHHHh--chHHHHHHhcCCCCcc-cHhHHHHHHHHHHcCChhhHHHHHhcC
Q 035507 451 ------------------------NDKIQAVIEA--GVCGRLVELLGHPSPS-VLTPALWTVGNIVMGDDFQTQCIINHG 503 (684)
Q Consensus 451 ------------------------~~~~~~~~~~--g~l~~L~~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~~i~~g 503 (684)
..+.+.+.+. .++..|.++++..++. ...-||.-++.+....|+....+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 0122333332 4678899999988777 667799999999999999999899999
Q ss_pred ChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 035507 504 AVPCLLALLIHNHKNSIKKEVSWIISNIA 532 (684)
Q Consensus 504 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 532 (684)
+-..++.+++++ +++|+-+|..++.-+.
T Consensus 400 ~k~~im~L~nh~-d~~VkfeAl~a~q~~i 427 (432)
T COG5231 400 VKEIIMNLINHD-DDDVKFEALQALQTCI 427 (432)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence 999999999999 9999999998887654
No 104
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0043 Score=72.46 Aligned_cols=341 Identities=17% Similarity=0.164 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcC
Q 035507 265 LQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA 344 (684)
Q Consensus 265 ~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~ 344 (684)
-+.-|+-.+..++.......+ -.-..+||+|.++=-+++ +.||.....+...+..++....+... ..++..|+.-|.
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~-p~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLE-PYLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLT 1049 (1702)
T ss_pred cccchhhchHHHHHHHHHhhh-hHHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhcc
Confidence 333455555555443321111 112347888888877777 89998888887777774444444433 356788888888
Q ss_pred CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc---cCCchHHHH---HHHHHHHHhccCC-----CCCCh
Q 035507 345 SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN---EHTELSMLR---IATTTLSNLCRGK-----PRPLF 413 (684)
Q Consensus 345 ~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---~~~~~~v~~---~a~~~L~nL~~~~-----~~~~~ 413 (684)
+....+|+.++.||..|....+. +.+.+ -++.+...+- ++-.+.++. .++.+|+.+|-.. +....
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~--~~~~e--~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPF--DQVKE--KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCCh--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence 89999999999999999977654 22222 1333332221 233344444 4666777666443 22233
Q ss_pred hhhhchHHHHHH-HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHh-HHHHH-------
Q 035507 414 DQVRPALPALAQ-LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT-PALWT------- 484 (684)
Q Consensus 414 ~~~~~~l~~L~~-lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~-~al~~------- 484 (684)
.....++|.+.. -+.+.-++++..++.++..++ ........... ...+|.|+.....-++.+.. -++++
T Consensus 1126 ~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~-Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ea 1203 (1702)
T KOG0915|consen 1126 EALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLA-KSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEA 1203 (1702)
T ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHH-Hhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHH
Confidence 344556665552 222667999999999999999 65554433222 24666677666654443322 22222
Q ss_pred ---HHH-HHcCChhhHHHH---H-------hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHH
Q 035507 485 ---VGN-IVMGDDFQTQCI---I-------NHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550 (684)
Q Consensus 485 ---L~n-l~~~~~~~~~~~---i-------~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~ 550 (684)
+.. .+.+.+ ..+.+ + =...+|.+.++++++-.-..|..++..++-++..-....... ....+..
T Consensus 1204 lDt~R~s~akssp-mmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~a 1281 (1702)
T KOG0915|consen 1204 LDTLRASAAKSSP-MMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRA 1281 (1702)
T ss_pred HHHHHHhhhcCCc-HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHH
Confidence 211 112221 11111 0 013567777777665445566666777766654211111111 1235666
Q ss_pred HHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 551 LVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 551 Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
++..+++.+..+++..+.|.+.++...++++...+++. .+..++...++ ....++..+.+|..+..
T Consensus 1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~----~l~~~l~k~es-~~siscatis~Ian~s~ 1347 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIET----LLADLLGKDES-LKSISCATISNIANYSQ 1347 (1702)
T ss_pred HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHH----HHHHHhccCCC-ccchhHHHHHHHHHhhH
Confidence 77777788999999999999999998888888776653 33444443332 22455555555555443
No 105
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0088 Score=67.81 Aligned_cols=232 Identities=13% Similarity=0.157 Sum_probs=154.2
Q ss_pred CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCCh
Q 035507 334 DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLF 413 (684)
Q Consensus 334 g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~ 413 (684)
+++..|+..+++.+..|+-.|+..++.++...|. + +...++..++.+++...+......++-+|..++... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~--Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--E--LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--H--HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 5678888888999999999999999999988762 2 233467778887766666788889999999999886 2222
Q ss_pred hhhhchHHHHHHHhcC--------CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHH
Q 035507 414 DQVRPALPALAQLIHS--------NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTV 485 (684)
Q Consensus 414 ~~~~~~l~~L~~lL~~--------~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 485 (684)
.....++|.+.+-+.- ....|+.+||..++.++...++...+.+.+.=.-..|...+-+++-.+|..|..++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 3446778888877753 33678888888888777333444444443332222344455677778888887777
Q ss_pred HHHHcC--Ch-hhHH----------------------HHHh-cCChHHHHH----H-hccCCChhHHHHHHHHHHHHhcC
Q 035507 486 GNIVMG--DD-FQTQ----------------------CIIN-HGAVPCLLA----L-LIHNHKNSIKKEVSWIISNIACG 534 (684)
Q Consensus 486 ~nl~~~--~~-~~~~----------------------~~i~-~g~l~~L~~----l-L~~~~~~~v~~~a~~~L~nl~~~ 534 (684)
-..... +- .... .+.. .|....++. . +.+- +..+|..|+|+|.+++..
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW-d~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW-DVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHh
Confidence 655422 10 0000 0000 122222222 2 3455 889999999999999775
Q ss_pred ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 535 NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 535 ~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
.++. .....+|+++.....++...+.-+..+.+.++.
T Consensus 575 ~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 575 EPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred hHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 5543 335688999999888888888776666666554
No 106
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.83 E-value=0.0001 Score=62.60 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=97.6
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~ 371 (684)
.+..|+.-.....+.+-+++...-|.|.+. +|.+-..+.+.+++..++..|..++..+.+.++..|+|+|.+... ...
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n-~~~ 94 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN-AKF 94 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH-HHH
Confidence 445555555544448899999999999998 888999999999999999999999999999999999999998865 678
Q ss_pred HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
+.+.++++.++..+ +++.......++.++..|+.+.
T Consensus 95 I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 95 IREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 88999999888888 7777788889999999999876
No 107
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.83 E-value=4.8e-05 Score=62.20 Aligned_cols=87 Identities=28% Similarity=0.463 Sum_probs=70.2
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507 293 VPRFVEFL-MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371 (684)
Q Consensus 293 i~~Lv~lL-~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~ 371 (684)
||.|++.| ++++ +.+|..|+++|+.+.. ..+++.|+.+++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 5555 9999999999995533 144899999999999999999999999883
Q ss_pred HhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLS 402 (684)
Q Consensus 372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~ 402 (684)
....++.|...+.++.+..++..|.++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 22368899999977777778888988875
No 108
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.80 E-value=7.2e-06 Score=94.78 Aligned_cols=105 Identities=18% Similarity=0.095 Sum_probs=83.7
Q ss_pred HHHHHHHHhhhCCCCCcEEEecCcccCCCccccccccccccccccceeecccccccchhhhh-hccc-cccCCccccccc
Q 035507 75 QNFVNELVKLQGSSQLKHLYISGSRLALNPEESERPEKLSYDIPSNEIILEDDISIAKSLFI-EKKL-TLSYLKSLTSFC 152 (684)
Q Consensus 75 ~~~l~~l~~~~~~~~l~~l~~~~~~~~l~~~~~~~c~~le~ii~~~~~~~~~~~~~~~~~~~-l~~l-~l~~Lp~L~~~~ 152 (684)
|+++..+. ...|..++.++|...+|+|+.+.+.+|..+|++|..++....... ....|. +..+ .+.++|.++++|
T Consensus 746 f~~l~~~~-~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~--~i~~f~~~~~l~~~~~l~~l~~i~ 822 (889)
T KOG4658|consen 746 FPNLSKVS-ILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE--LILPFNKLEGLRMLCSLGGLPQLY 822 (889)
T ss_pred HHHHHHHH-hhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc--EEecccccccceeeecCCCCceeE
Confidence 66777777 566668999999999999999999999999999985543321110 234444 5888 699999999999
Q ss_pred cCccccccCCccceeeccCcccccccccccCc
Q 035507 153 SGSCAIKFPSLEVLVVDDCHNMMIFSRGELSA 184 (684)
Q Consensus 153 ~~~~~~~fp~L~~~~v~~Cp~l~~~~~~~~~~ 184 (684)
+.+ ++||+|+++.|.+||+++.++.....+
T Consensus 823 ~~~--l~~~~l~~~~ve~~p~l~~~P~~~~~~ 852 (889)
T KOG4658|consen 823 WLP--LSFLKLEELIVEECPKLGKLPLLSTLT 852 (889)
T ss_pred ecc--cCccchhheehhcCcccccCccccccc
Confidence 986 999999999999999999777664433
No 109
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.79 E-value=0.00061 Score=58.06 Aligned_cols=153 Identities=9% Similarity=0.027 Sum_probs=120.3
Q ss_pred ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHH
Q 035507 504 AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIK 583 (684)
Q Consensus 504 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 583 (684)
.+..|+.-.+...+.+.+.....-|.|++-. |.+-..+.+.+++..++..+...+..++..+..+|+|++. ++...+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~ 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence 3555666565554788888888888888664 5777888899999999999999999999999999999997 778888
Q ss_pred HHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 035507 584 YLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEK 663 (684)
Q Consensus 584 ~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~ 663 (684)
.+.+.++++.++..+.++...++..++.++..+...+.. ....+-....++.++....+.+.+.+..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL 160 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNL 160 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence 899999999999999998888888887777655544332 2345555566777777777777777888
Q ss_pred HHHHHHHhc
Q 035507 664 SVKILETYW 672 (684)
Q Consensus 664 a~~ii~~~f 672 (684)
|...++++.
T Consensus 161 a~~fl~~~~ 169 (173)
T KOG4646|consen 161 ASAFLDKHV 169 (173)
T ss_pred HHHHHHhhc
Confidence 888887764
No 110
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0013 Score=70.38 Aligned_cols=222 Identities=14% Similarity=0.104 Sum_probs=148.6
Q ss_pred HHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC---h--HHHH
Q 035507 381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN---N--DKIQ 455 (684)
Q Consensus 381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~---~--~~~~ 455 (684)
++.+. .+.|..++..|+.++..|..+. .....+....++++.+++..|+..|+..++-.. ... . +..+
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~g-n~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWG-NRCPAPLERESEE 275 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hcCCCcccchhhh
Confidence 44444 6777888888888888887743 122345566788889999999999977776554 221 1 1111
Q ss_pred HHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH--hc
Q 035507 456 AVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNI--AC 533 (684)
Q Consensus 456 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~ 533 (684)
.=....++..+...+.+.+..+|..|..++|.+..-+++..+..++..++..+-..-. ..+.+....++- +.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~------ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT------AHKRPKALYSSGEWSS 349 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh------cccchHHHHhcCCccc
Confidence 1122247888999999999999999999999998877766655555433332211110 011111111211 00
Q ss_pred -----------CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC
Q 035507 534 -----------GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD 602 (684)
Q Consensus 534 -----------~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~ 602 (684)
...+.-..++..|.--.++.-+.+.=.+||+.|...++.++.. ++.+... .++.|++++++..
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDEI 423 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccHH
Confidence 1122334466677777788888887889999999999999873 4444443 6889999999999
Q ss_pred hHHHHHHHHHHHHHHhccc
Q 035507 603 PKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 603 ~~v~~~al~~L~~il~~~~ 621 (684)
..++..++.+|..|.....
T Consensus 424 ~~VRL~ai~aL~~Is~~l~ 442 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVHLA 442 (823)
T ss_pred HHHHHHHHHHHHHHHHHhe
Confidence 9999999999999988743
No 111
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.76 E-value=0.00023 Score=70.01 Aligned_cols=181 Identities=17% Similarity=0.152 Sum_probs=117.3
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCC--CCcHHHHHHc--CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhc
Q 035507 258 VWSDDNNLQLEATTQFQKLLSIE--SMPIEEVIES--GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEH 333 (684)
Q Consensus 258 L~s~~~~~~~~a~~~L~~l~s~~--~~~~~~ii~~--g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~ 333 (684)
-.+.|++.+..|+..|+.++... ......+++. .+++.+...+.+.. ..+...|+.++..++..-....... -.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~-~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPY-AD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHH-HH
Confidence 35789999999999999998877 2223333221 56677777777666 6899999999999997433333333 23
Q ss_pred CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC--CC
Q 035507 334 DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP--RP 411 (684)
Q Consensus 334 g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~--~~ 411 (684)
..+|.|+..+.++...+++.|..+|..++...+.... .+..++.....+.++.++..++..+..+...-+ ..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 5689999999999999999999999999876541111 223444444478889999999888888877654 11
Q ss_pred Chh---hhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 412 LFD---QVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 412 ~~~---~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
... ....+.+.+..++.+.+++++..|-.++..+.
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 111 23668889999999999999999998888876
No 112
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.76 E-value=0.0018 Score=73.77 Aligned_cols=291 Identities=16% Similarity=0.144 Sum_probs=185.1
Q ss_pred hHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC----CC
Q 035507 336 VPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK----PR 410 (684)
Q Consensus 336 i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~----~~ 410 (684)
++.+...+.+ ...+.+..|+..|..++..... ...-..++|.++.++ .++...++..|+.+|..+...- +.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 5566665555 4567778899999888854322 222233577777777 7888899998888887654432 33
Q ss_pred CChhhhhchHHHHHHHhcC-CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHH
Q 035507 411 PLFDQVRPALPALAQLIHS-NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV 489 (684)
Q Consensus 411 ~~~~~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~ 489 (684)
.......-++|.|.+++.+ ....++..-+..|+.++ ..+..+.+.+.-.....++.+++... . .-
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA-----~tA~rFle~~q~~~~~g~~n~~nset-------~--~~ 565 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA-----KTAYRFLELTQELRQAGMLNDPNSET-------A--PE 565 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH-----HHHHHHHHHHHHHHhcccccCccccc-------c--cc
Confidence 4445568899999999988 55666777777777777 23333333333333333455544330 0 01
Q ss_pred cCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc--CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHH
Q 035507 490 MGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC--GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAA 567 (684)
Q Consensus 490 ~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~ 567 (684)
.......+.+.+ ++-.....++.++ ++.||+.-...|.-+|. |. +. -+.-+++.|+..|.+.|..+|..-.
T Consensus 566 ~~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk-~k----sND~iLshLiTfLNDkDw~LR~aFf 638 (1431)
T KOG1240|consen 566 QNYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGK-EK----SNDVILSHLITFLNDKDWRLRGAFF 638 (1431)
T ss_pred cccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhh-cc----cccchHHHHHHHhcCccHHHHHHHH
Confidence 111223333332 4445677778777 77888887777777764 21 00 1123689999999999998887766
Q ss_pred HHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHH
Q 035507 568 WAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLE 647 (684)
Q Consensus 568 ~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 647 (684)
..|.-++..-... =++..+++.|.+.|.+..+-|+..|+.++..+++.+--.+. +. ...++
T Consensus 639 dsI~gvsi~VG~r----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~----------~v-----~~i~~ 699 (1431)
T KOG1240|consen 639 DSIVGVSIFVGWR----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP----------AV-----KDILQ 699 (1431)
T ss_pred hhccceEEEEeee----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH----------HH-----HHHHH
Confidence 6665444311111 02455788888899999999999999999999988754431 11 12244
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHH
Q 035507 648 KIENLQSHDNNEIHEKSVKILET 670 (684)
Q Consensus 648 ~L~~L~~~~~~~i~~~a~~ii~~ 670 (684)
.+.-|..|+|.=|++.+..+|..
T Consensus 700 ~v~PlL~hPN~WIR~~~~~iI~~ 722 (1431)
T KOG1240|consen 700 DVLPLLCHPNLWIRRAVLGIIAA 722 (1431)
T ss_pred hhhhheeCchHHHHHHHHHHHHH
Confidence 56667889999998888877754
No 113
>PF05536 Neurochondrin: Neurochondrin
Probab=97.75 E-value=0.003 Score=69.70 Aligned_cols=234 Identities=18% Similarity=0.171 Sum_probs=161.1
Q ss_pred hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC---CchhHhhcCCHHHHHHHhccC------CchHHHHHHHHHHHHhcc
Q 035507 336 VPIFVKLLASPSDDVREQAVWALGNVAADSSG---CRDLVLSEGALIPLLAQLNEH------TELSMLRIATTTLSNLCR 406 (684)
Q Consensus 336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~---~r~~i~~~g~l~~Ll~~L~~~------~~~~v~~~a~~~L~nL~~ 406 (684)
+..-+.+|++.+.+-+-.++..+.++....+. .++.+.+.=+..-+-++|... +....+.-++..|+.+|+
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 55667777777766666677777777765542 223455555555666666432 335677789999999999
Q ss_pred CCCCCChhhhhchHHHHHHHhcCCcH-HHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHH
Q 035507 407 GKPRPLFDQVRPALPALAQLIHSNDE-QVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTV 485 (684)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 485 (684)
.+.........+-+|.++..+...+. ++...++.+|..++ ..++..+.+++.|.++.|.+.+.+ .+.....|+.++
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia--s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA--SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH--cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 65444455667889999999987776 99999999999999 667778889999999999999987 666788999999
Q ss_pred HHHHcCChhh-----HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHH-----HHHHHHhCCHHHHHHHh
Q 035507 486 GNIVMGDDFQ-----TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQ-----IQAVIDAGLIGPLVNLL 555 (684)
Q Consensus 486 ~nl~~~~~~~-----~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~l~~~g~l~~Li~ll 555 (684)
.+++...... .+.+ ..+++.+-..+... ....+-+++..|+++....+.. ...-.-..+...+..++
T Consensus 164 ~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 9987654411 1111 13456666666655 5567888899999887644211 11112233566667777
Q ss_pred ccC-CHhHHHHHHHHHHHhhc
Q 035507 556 QNA-EFDIKEEAAWAISNASS 575 (684)
Q Consensus 556 ~~~-~~~v~~~a~~aL~nl~~ 575 (684)
++. .+.-|..|......+..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 765 66667777776666654
No 114
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.75 E-value=0.005 Score=66.49 Aligned_cols=262 Identities=15% Similarity=0.133 Sum_probs=174.0
Q ss_pred HHhcCCCCcHHHHHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC
Q 035507 275 KLLSIESMPIEEVIESGVVPRFVEFL---------MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS 345 (684)
Q Consensus 275 ~l~s~~~~~~~~ii~~g~i~~Lv~lL---------~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~ 345 (684)
+++++++...+.+.....+..|.++- ....++.+..+|++||.|+...++..|..+++.|..+.++..|+.
T Consensus 6 RiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~ 85 (446)
T PF10165_consen 6 RILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKN 85 (446)
T ss_pred HHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHc
Confidence 34666665666666666677776665 333348999999999999999999999999999999999999987
Q ss_pred C-----ChHHHHHHHHHHHHhhCCCCCCchhHhh-cCCHHHHHHHhcc---------C-------CchHHHHHHHHHHHH
Q 035507 346 P-----SDDVREQAVWALGNVAADSSGCRDLVLS-EGALIPLLAQLNE---------H-------TELSMLRIATTTLSN 403 (684)
Q Consensus 346 ~-----~~~v~~~a~~~L~nLa~~~~~~r~~i~~-~g~l~~Ll~~L~~---------~-------~~~~v~~~a~~~L~n 403 (684)
. +.++.--..+.|--++...+..+..+.+ .+++..++..+.. . .+......++.++.|
T Consensus 86 ~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFN 165 (446)
T PF10165_consen 86 YSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFN 165 (446)
T ss_pred ccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHH
Confidence 5 6778778888887777766666665554 4666666666531 0 134556678888888
Q ss_pred hccCCCCCCh----hhhhchHHHHHHHh---c--CCcHHHHHHHHHHHHhhccCCChHH-----------HHHHHHhchH
Q 035507 404 LCRGKPRPLF----DQVRPALPALAQLI---H--SNDEQVLTDACWALFGLSGDRNNDK-----------IQAVIEAGVC 463 (684)
Q Consensus 404 L~~~~~~~~~----~~~~~~l~~L~~lL---~--~~d~~v~~~al~~L~~L~~~~~~~~-----------~~~~~~~g~l 463 (684)
+....+.... .....++..+..++ . .+......+++.+|.++- -..... .........+
T Consensus 166 it~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp-l~~~~~l~~~~~~~~~~~~~~~~~~~v 244 (446)
T PF10165_consen 166 ITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP-LECLDSLLSPKFQQSSLFPEGDNMDVV 244 (446)
T ss_pred hhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC-hHHHhhhhcccCCcccccCCCCChHHH
Confidence 8777643332 23345555555552 1 123566778888888774 111111 0001122355
Q ss_pred HHHHHhcCC-----C---CcccHhHHHHHHHHHHcCChhhHHHHHh----------------cCChHHHHHHhccCCChh
Q 035507 464 GRLVELLGH-----P---SPSVLTPALWTVGNIVMGDDFQTQCIIN----------------HGAVPCLLALLIHNHKNS 519 (684)
Q Consensus 464 ~~L~~lL~~-----~---~~~v~~~al~~L~nl~~~~~~~~~~~i~----------------~g~l~~L~~lL~~~~~~~ 519 (684)
..|+.+|.. . -.....+.+.+|.+++..+...++.+.. ..+-..|+.++.++ .+.
T Consensus 245 ~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~ 323 (446)
T PF10165_consen 245 ERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQ 323 (446)
T ss_pred HHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-Cch
Confidence 666666532 1 1356778889999999877655544432 23456888899888 688
Q ss_pred HHHHHHHHHHHHhcCChHH
Q 035507 520 IKKEVSWIISNIACGNREQ 538 (684)
Q Consensus 520 v~~~a~~~L~nl~~~~~~~ 538 (684)
++..++..+..+|..+...
T Consensus 324 ~k~~vaellf~Lc~~d~~~ 342 (446)
T PF10165_consen 324 LKDAVAELLFVLCKEDASR 342 (446)
T ss_pred HHHHHHHHHHHHHhhhHHH
Confidence 9999998888888755443
No 115
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.74 E-value=0.00012 Score=59.73 Aligned_cols=87 Identities=30% Similarity=0.415 Sum_probs=71.4
Q ss_pred HHHHHHHh-cCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHH
Q 035507 420 LPALAQLI-HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQC 498 (684)
Q Consensus 420 l~~L~~lL-~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~ 498 (684)
+|.|++.+ .++++.++..++++|+.+. . ..+++.|..+++++++.++..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---D---------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---H---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---C---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 57888888 8899999999999999765 1 1458999999999999999999999998831
Q ss_pred HHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507 499 IINHGAVPCLLALLIHNHKNSIKKEVSWIIS 529 (684)
Q Consensus 499 ~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 529 (684)
...++.|.+++.++.+..+|..|+++|+
T Consensus 61 ---~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ---PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2378899999988746677999998875
No 116
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.74 E-value=7.4e-05 Score=54.88 Aligned_cols=55 Identities=27% Similarity=0.586 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507 518 NSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA 573 (684)
Q Consensus 518 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl 573 (684)
+.+|..|+|+|++++...++..+... ..++|.|+.++.++++.||..|+|+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999888777777644 45999999999999999999999999875
No 117
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.0024 Score=74.48 Aligned_cols=333 Identities=13% Similarity=0.149 Sum_probs=191.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHH-HHHHHH--hcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCch
Q 035507 250 ILPMMVAGVWSDDNNLQLEAT-TQFQKL--LSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIAS-GTSE 325 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~-~~L~~l--~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~-~~~~ 325 (684)
....+...+.|.++..|.+++ |.|.-+ ++.. +.. ......+...+.++|.+.+ +-.|..|++.|+-+-+ ++..
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~-~~v-~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQ-PEV-VLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-chh-hhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCch
Confidence 456677788899999888765 444322 2222 111 1122234578889998877 7888888887765544 2333
Q ss_pred hHHHHHhcCChHHHHHhcCCC---------ChHHHH-------------HHHHHHHHhhCCCCCCchhHhhcCCHHHHHH
Q 035507 326 NTKVVIEHDAVPIFVKLLASP---------SDDVRE-------------QAVWALGNVAADSSGCRDLVLSEGALIPLLA 383 (684)
Q Consensus 326 ~~~~i~~~g~i~~Li~lL~~~---------~~~v~~-------------~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~ 383 (684)
.++.+ +..|+.-|..+ +.++.+ ....=|.|||.+-.. .+. +-.+++
T Consensus 896 ~k~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-PdL------VYKFM~ 963 (1702)
T KOG0915|consen 896 LKKSL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-PDL------VYKFMQ 963 (1702)
T ss_pred hHHHH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-hHH------HHHHHH
Confidence 33333 33444433211 111111 122234444433211 111 233444
Q ss_pred HhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchH
Q 035507 384 QLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVC 463 (684)
Q Consensus 384 ~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l 463 (684)
+-+++..-.-++-|+.-++.++.............++|.|.+.=.++|+.|+.....+-.-+. ..+....+.... .++
T Consensus 964 LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li-~D~k~~vd~y~n-eIl 1041 (1702)
T KOG0915|consen 964 LANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALI-TDSKKVVDEYLN-EIL 1041 (1702)
T ss_pred HhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhc-cChHHHHHHHHH-HHH
Confidence 443333334444555556666555433344455777788877777889988877766666666 433344443333 577
Q ss_pred HHHHHhcCCCCcccHhHHHHHHHHHHcCChhh--HHHHHhcCChHHHHHHhccCCChhHHHHH---HHHHHHHhc--C--
Q 035507 464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ--TQCIINHGAVPCLLALLIHNHKNSIKKEV---SWIISNIAC--G-- 534 (684)
Q Consensus 464 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~--~~~~i~~g~l~~L~~lL~~~~~~~v~~~a---~~~L~nl~~--~-- 534 (684)
.-|+.-+.+..+.+|+.+|-++..+..+.+.. .+.+- .+...+...+++- ...||+.| +.+|+.++. +
T Consensus 1042 ~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~ 1118 (1702)
T KOG0915|consen 1042 DELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDV 1118 (1702)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccc
Confidence 77888889999999999999999999987632 11111 2444555555555 66777765 455666553 1
Q ss_pred -ChHHHHHHHHhCCHHHHHH--HhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHH
Q 035507 535 -NREQIQAVIDAGLIGPLVN--LLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIV 606 (684)
Q Consensus 535 -~~~~~~~l~~~g~l~~Li~--ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~ 606 (684)
+....+.+++ .++|.|+. ++ +.-.++|+.+...+..++.........++. ..++.|.+....-++.+.
T Consensus 1119 ~~~~~~~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1119 TNGAKGKEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVL 1189 (1702)
T ss_pred CCcccHHHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHH
Confidence 2222233333 36777765 23 567899999999999999865544333322 256667777666555543
No 118
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0021 Score=69.68 Aligned_cols=265 Identities=16% Similarity=0.188 Sum_probs=165.0
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507 291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370 (684)
Q Consensus 291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~ 370 (684)
|+...|.+.|++.+++.+|.-|+-.|+-.+.++... .....+-..|..++.-.-+.|..++|-+-.....
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--- 482 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--- 482 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc---
Confidence 356777777777666777777777666555543321 2244555666666666666666666665433322
Q ss_pred hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHH--hhccC
Q 035507 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALF--GLSGD 448 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~--~L~~~ 448 (684)
..++.-++..-....-..+.+-..--++-...+. ...+=+.+-+++.+.|+-++.....+++ +.. .
T Consensus 483 ----~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~G-T 550 (929)
T KOG2062|consen 483 ----QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVG-T 550 (929)
T ss_pred ----HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhc-c
Confidence 1123334444433334445553333232222221 1245567778888888888887766553 444 3
Q ss_pred CChHHHHHHHHhchHHHHHHh-cCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 035507 449 RNNDKIQAVIEAGVCGRLVEL-LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWI 527 (684)
Q Consensus 449 ~~~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~ 527 (684)
+++ +++..|++. .++.+.++|..|.-+||-++..+++ .+|..+++|..+.++.||..|+.+
T Consensus 551 gnn---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~A 612 (929)
T KOG2062|consen 551 GNN---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMA 612 (929)
T ss_pred Cch---------hhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHH
Confidence 332 466777777 6778999999999999999987774 456778888777799999999999
Q ss_pred HHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChH
Q 035507 528 ISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPK 604 (684)
Q Consensus 528 L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~ 604 (684)
|+-.|+++.... .+..|-.+..+...-||+-|+.+++-+....++..+.. -.++.+.+...+.....+
T Consensus 613 LGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk--v~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 613 LGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK--VNGFRKQLEKVINDKHED 680 (929)
T ss_pred HhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch--HHHHHHHHHHHhhhhhhH
Confidence 999988653221 23344444556677899999999988877555443333 233455555555554443
No 119
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.015 Score=63.35 Aligned_cols=327 Identities=16% Similarity=0.189 Sum_probs=199.8
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH-Hhc-CCCChHHHHHHHHHHHHhhCCCCCC
Q 035507 291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFV-KLL-ASPSDDVREQAVWALGNVAADSSGC 368 (684)
Q Consensus 291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li-~lL-~~~~~~v~~~a~~~L~nLa~~~~~~ 368 (684)
..+|.+.+.|.+.+ +-+|..|.-|+..|-... ..++ .++ |.|+ .+| ...++..+++|...|...-.
T Consensus 134 pl~p~IracleHrh-sYVRrNAilaifsIyk~~----~~L~-pDa-peLi~~fL~~e~DpsCkRNAFi~L~~~D~----- 201 (948)
T KOG1058|consen 134 PLMPSIRACLEHRH-SYVRRNAILAIFSIYKNF----EHLI-PDA-PELIESFLLTEQDPSCKRNAFLMLFTTDP----- 201 (948)
T ss_pred hhHHHHHHHHhCcc-hhhhhhhheeehhHHhhh----hhhc-CCh-HHHHHHHHHhccCchhHHHHHHHHHhcCH-----
Confidence 46777788888888 789999988888777621 1111 232 3333 333 44677788888776665421
Q ss_pred chhHhhcCCHHHHHHHhcc--CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 369 RDLVLSEGALIPLLAQLNE--HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 369 r~~i~~~g~l~~Ll~~L~~--~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
+ .++..+.....+ +-+..++...+..+...|...|. .....+..+..+|.+.++.++..|..++..++
T Consensus 202 -E-----rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS 271 (948)
T KOG1058|consen 202 -E-----RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS 271 (948)
T ss_pred -H-----HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH----HhhHHHHHHHHHHhcCCchhhhhhcceEEEcc
Confidence 1 123344333322 22455666666677777664432 23456778888999999999999999999988
Q ss_pred cCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHH
Q 035507 447 GDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVS 525 (684)
Q Consensus 447 ~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~ 525 (684)
.++...... ...++.++.. ++-.+..-.+.-|..+...+....+ |.+--++.+|.++ +-++|+.+.
T Consensus 272 --~~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~-----~l~mDvLrvLss~-dldvr~Ktl 338 (948)
T KOG1058|consen 272 --NDPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ-----GLIMDVLRVLSSP-DLDVRSKTL 338 (948)
T ss_pred --CCHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH-----HHHHHHHHHcCcc-cccHHHHHH
Confidence 344333322 2334444422 3334444445555555533332222 4555677888888 999999999
Q ss_pred HHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChH
Q 035507 526 WIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPK 604 (684)
Q Consensus 526 ~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~ 604 (684)
.....++. .+.+.+..+.+..+...--. =...+.+.|..-..++..++... ++... .+++.+.+.+.+.++.
T Consensus 339 di~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~F-p~~aa-----tvV~~ll~fisD~N~~ 411 (948)
T KOG1058|consen 339 DIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKF-PEVAA-----TVVSLLLDFISDSNEA 411 (948)
T ss_pred HHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcC-hHHHH-----HHHHHHHHHhccCCHH
Confidence 88887765 45444444443322211111 11124456777778888877643 44333 3688899999999998
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 035507 605 IVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGRV 676 (684)
Q Consensus 605 v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e~ 676 (684)
.-..++..+...++.-++.. ...++ ..++.+..-.+.++++-|.+|+-.|...+.
T Consensus 412 aas~vl~FvrE~iek~p~Lr------------~~ii~-----~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 412 AASDVLMFVREAIEKFPNLR------------ASIIE-----KLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHHHHHHhCchHH------------HHHHH-----HHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 88888888888777654431 11111 234555556678899999999999986654
No 120
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.68 E-value=0.00053 Score=67.42 Aligned_cols=187 Identities=17% Similarity=0.104 Sum_probs=121.8
Q ss_pred hcCCcHHHHHHHHHHHHhhccCCC--hHHHHHHHHh--chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc
Q 035507 427 IHSNDEQVLTDACWALFGLSGDRN--NDKIQAVIEA--GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502 (684)
Q Consensus 427 L~~~d~~v~~~al~~L~~L~~~~~--~~~~~~~~~~--g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~ 502 (684)
-.+.|.+.+..++..|..++ .+. ......+.+. .++..+...+.+....+...|+.++..++.......+...+
T Consensus 16 ~~~~~W~~r~~al~~L~~l~-~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~- 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLI-KGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD- 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHH-HH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred CCccCHHHHHHHHHHHHHHH-HcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence 35678999999999999888 444 2223333222 45567778888888889999999999999766655554432
Q ss_pred CChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCC-HHHHHHHhccCCHhHHHHHHHHHHHhhcCCC--H
Q 035507 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL-IGPLVNLLQNAEFDIKEEAAWAISNASSRGT--H 579 (684)
Q Consensus 503 g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~-l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~--~ 579 (684)
.++|.|++.+.++ ...++..|..+|..++...+.. ..+ ++.+...+.+.++.+|..++..+..++.... .
T Consensus 94 ~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 94 ILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 5789999999888 8889999999999998864311 112 5667777888999999999999999887543 1
Q ss_pred HHHHH-HHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 580 DQIKY-LVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 580 ~~~~~-l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
..... ..-..+++.+..++.+++++++..+-.++..+...-+.
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 11111 00133678889999999999999999999998776544
No 121
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.67 E-value=0.053 Score=58.40 Aligned_cols=348 Identities=16% Similarity=0.135 Sum_probs=193.6
Q ss_pred HHHHHHhcCCCH---HHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH-
Q 035507 252 PMMVAGVWSDDN---NLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT- 327 (684)
Q Consensus 252 ~~lv~~L~s~~~---~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~- 327 (684)
|.+...|.+++. ......+.++..+.... +-.+.++ ..++..+-...+...+.+....++.++..+........
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~-~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSP-QILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCCh-hHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 455566665443 44555667777755432 2222222 24445555554433346677778888888766332222
Q ss_pred ----HHHHhcCChHHHHHhcCC-----C--ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc----------
Q 035507 328 ----KVVIEHDAVPIFVKLLAS-----P--SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN---------- 386 (684)
Q Consensus 328 ----~~i~~~g~i~~Li~lL~~-----~--~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---------- 386 (684)
....+..+++.+.++... . ++.+.+.+...+..+...-+.-++. ..+..+.....
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~----~~~~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQ----EILDELYSLFLSPKSFSPFQP 155 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHH----HHHHHHHHHHccccccCCCCc
Confidence 223333477777776532 1 2455566666666665444321111 11333333332
Q ss_pred cCC-chHHHHHHHHHHHH-hccCCCCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhccCC--ChHHHHHHHHhc
Q 035507 387 EHT-ELSMLRIATTTLSN-LCRGKPRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLSGDR--NNDKIQAVIEAG 461 (684)
Q Consensus 387 ~~~-~~~v~~~a~~~L~n-L~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~~~--~~~~~~~~~~~g 461 (684)
... ...........+.. ++.-++..........+..++.+.. ..++..+..++.+++-++ .. .++..+ .
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~Lv-NK~~~~~~l~-----~ 229 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLV-NKWPDDDDLD-----E 229 (415)
T ss_pred cccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-cCCCChhhHH-----H
Confidence 000 00112222222222 2222222332244456777776654 456888999999999888 33 122122 2
Q ss_pred hHHHHHHhc-CCCCcccHhHHHHHHHHHH-----cCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC
Q 035507 462 VCGRLVELL-GHPSPSVLTPALWTVGNIV-----MGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN 535 (684)
Q Consensus 462 ~l~~L~~lL-~~~~~~v~~~al~~L~nl~-----~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 535 (684)
++..+..-+ .......+..++.++.-++ ++++...+ .+..|+.++.+ +.+...|+.++.-+....
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~------~~~~L~~lL~~---~~~g~~aA~~f~il~~d~ 300 (415)
T PF12460_consen 230 FLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATE------LLDKLLELLSS---PELGQQAAKAFGILLSDS 300 (415)
T ss_pred HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHH------HHHHHHHHhCC---hhhHHHHHHHHhhHhcCc
Confidence 334444333 3334444555555443332 34442222 45678888865 467888888888887652
Q ss_pred hH--------HHHHHHHh----CCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCh
Q 035507 536 RE--------QIQAVIDA----GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADP 603 (684)
Q Consensus 536 ~~--------~~~~l~~~----g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~ 603 (684)
++ .++.+.+. .++|.|++-....+.+.+.....||.++..+...+.... .-..+++.+.+.|+.+|+
T Consensus 301 ~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~~~ 379 (415)
T PF12460_consen 301 DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLPDA 379 (415)
T ss_pred HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCCCH
Confidence 22 23333322 268888888888777788999999999998654332221 123478889999999999
Q ss_pred HHHHHHHHHHHHHHhccc
Q 035507 604 KIVTVCLEGLENILKVGE 621 (684)
Q Consensus 604 ~v~~~al~~L~~il~~~~ 621 (684)
+++..++.++..++....
T Consensus 380 ~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 380 DVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHHcCH
Confidence 999999999999998763
No 122
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0044 Score=65.26 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=82.1
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~ 371 (684)
..|.|-..+++.- +.++.+++++++.++..+ .....++ ..+..|-.+|.++....|-.|+++|..||...|.- .
T Consensus 265 ~rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--v 338 (898)
T COG5240 265 LRPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--V 338 (898)
T ss_pred HHHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--e
Confidence 3455556666555 689999999999988733 1122221 34677888899999999999999999999877652 1
Q ss_pred HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
.....-+..|+ ++.+..+-..|+ ..|............-..+|.+++=+.++-.-+..+|++.|+.+.
T Consensus 339 ~vcN~evEsLI----sd~Nr~IstyAI---TtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F 406 (898)
T COG5240 339 SVCNKEVESLI----SDENRTISTYAI---TTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF 406 (898)
T ss_pred eecChhHHHHh----hcccccchHHHH---HHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence 11112233333 344444444444 344333333333333333444443333444455666666666555
No 123
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.023 Score=63.61 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=107.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
..+.+++.+.+.|.+++.-.-..+...+...+ ...+. +++.+.+=+.+++ +.+|..|++.++.+-. + .
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~----e 123 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--K----E 123 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--H----H
Confidence 56778888788888888777777777766654 12222 4677777788888 9999999999987654 1 1
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
+. ..+++++.+++.++++.||..|+.|+.++-.-++ +.+.+.|.+..+..++ .++++.+.++|+.+|..+...
T Consensus 124 l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 124 LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 22 2458899999999999999999999999986653 3455666665555555 889999999999999998766
No 124
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.069 Score=60.40 Aligned_cols=281 Identities=17% Similarity=0.162 Sum_probs=173.8
Q ss_pred CCHHHHHHhhc------CC-CCHHHHHHHHHHHHHHhcC--CchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHh
Q 035507 291 GVVPRFVEFLM------RE-DYPQLQFQAAWALTNIASG--TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNV 361 (684)
Q Consensus 291 g~i~~Lv~lL~------~~-~~~~v~~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nL 361 (684)
|+++.+++.+. .+ +++.-+.-|+.+++++++- ....-+..++.-.++.+...++++.-.+|..|+|.++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 56677777776 22 2356667788888888861 111222233344466666777888899999999999999
Q ss_pred hCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC---ChhhhhchHHHHHHHhcCCcHHHHHHH
Q 035507 362 AADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP---LFDQVRPALPALAQLIHSNDEQVLTDA 438 (684)
Q Consensus 362 a~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~---~~~~~~~~l~~L~~lL~~~d~~v~~~a 438 (684)
+... +.+...-..++....+.|.++.+..++-.|+-||..+..+.+.. ....+.+.++.++++.+.-+.+....+
T Consensus 490 ~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred Hhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 9443 23333344567778888877888889999999999998886433 233446666666677666555555555
Q ss_pred HHHHH-hhccCCChHHHHHH--HHhchHHHHHHhcCC---CCccc---HhHHHHHHHHHHc------CChhhHHHHHhcC
Q 035507 439 CWALF-GLSGDRNNDKIQAV--IEAGVCGRLVELLGH---PSPSV---LTPALWTVGNIVM------GDDFQTQCIINHG 503 (684)
Q Consensus 439 l~~L~-~L~~~~~~~~~~~~--~~~g~l~~L~~lL~~---~~~~v---~~~al~~L~nl~~------~~~~~~~~~i~~g 503 (684)
+..+. ..+ ++..... +-..+.....+++.. .++.. ...|..+|..+.+ ..++..+ -+...
T Consensus 568 me~iV~~fs----eElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~ 642 (1010)
T KOG1991|consen 568 MEKIVCKFS----EELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPI 642 (1010)
T ss_pred HHHHHHHHH----HhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHH
Confidence 54442 222 1111111 111344556666653 22222 3334444433321 1222222 12334
Q ss_pred ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHH
Q 035507 504 AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQ 581 (684)
Q Consensus 504 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~ 581 (684)
++|.+-.+|.+. -.++-.+++..+.+++...++.--.+. |+++.+.+.+.....+.-...+-++.|.+..|.+..
T Consensus 643 ~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~ 717 (1010)
T KOG1991|consen 643 VLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSL 717 (1010)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhh
Confidence 677777777777 777888888888888764433222222 478888898888888888999999999998776543
No 125
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.57 E-value=0.0006 Score=56.26 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 035507 520 IKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599 (684)
Q Consensus 520 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~ 599 (684)
.|+.+.++|+.++.+-+..+...++. ++|+++..+.+.+..+|..|+.++.|++.....+...++-+ +.+.|..+..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHc
Confidence 36778888888877555555555554 89999999999999999999999999998655555554444 7889999999
Q ss_pred CCChHHHHHHHHHHHHHHh
Q 035507 600 CADPKIVTVCLEGLENILK 618 (684)
Q Consensus 600 ~~~~~v~~~al~~L~~il~ 618 (684)
+.++.|+..+ +.|.++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999987665 67777764
No 126
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.16 Score=54.02 Aligned_cols=305 Identities=12% Similarity=0.145 Sum_probs=180.5
Q ss_pred HHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHH
Q 035507 314 WALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSM 393 (684)
Q Consensus 314 ~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v 393 (684)
++...+...+++.+..+ .|.|-..+++....|.-.+++++..++...-. ....+ ..+..|-.+| ..+....
T Consensus 249 r~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~ 319 (898)
T COG5240 249 RATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVL 319 (898)
T ss_pred HHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHH
Confidence 33444444444433332 35555667776677888888888888755411 11111 1233444444 6677778
Q ss_pred HHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC
Q 035507 394 LRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP 473 (684)
Q Consensus 394 ~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~ 473 (684)
+-.|..+|..++...|... .-+-+-+-.++.+.+..+...|+.+|.. .+.++.+..++. .++.++.=+.++
T Consensus 320 rFsA~Riln~lam~~P~kv----~vcN~evEsLIsd~Nr~IstyAITtLLK---TGt~e~idrLv~--~I~sfvhD~SD~ 390 (898)
T COG5240 320 RFSAMRILNQLAMKYPQKV----SVCNKEVESLISDENRTISTYAITTLLK---TGTEETIDRLVN--LIPSFVHDMSDG 390 (898)
T ss_pred HHHHHHHHHHHHhhCCcee----eecChhHHHHhhcccccchHHHHHHHHH---cCchhhHHHHHH--HHHHHHHhhccC
Confidence 8899999999998765332 3344556677788888888888888765 456777766654 356666656666
Q ss_pred CcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHH
Q 035507 474 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVN 553 (684)
Q Consensus 474 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ 553 (684)
-..+...|++.|++.- +..... .+..|...|......+.++.+..+++.+....|+.... ++..|+.
T Consensus 391 FKiI~ida~rsLsl~F---p~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~ 457 (898)
T COG5240 391 FKIIAIDALRSLSLLF---PSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCT 457 (898)
T ss_pred ceEEeHHHHHHHHhhC---cHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHH
Confidence 5666666777666653 222221 34455555544337788889999998888766665443 4556777
Q ss_pred HhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcch
Q 035507 554 LLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDI 633 (684)
Q Consensus 554 ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~ 633 (684)
.+.+.+. -+.+...|+-+-.-|..... -...+..+.+-+--.+.-++..|+.+|.++.-..+...
T Consensus 458 fIEDcey--~~I~vrIL~iLG~EgP~a~~----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~--------- 522 (898)
T COG5240 458 FIEDCEY--HQITVRILGILGREGPRAKT----PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV--------- 522 (898)
T ss_pred HHhhcch--hHHHHHHHHHhcccCCCCCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc---------
Confidence 7765433 24455555554432210000 00123333333334466688888888887654432211
Q ss_pred hHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507 634 NQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY 671 (684)
Q Consensus 634 ~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~ 671 (684)
..+. ....+..+.++++.+|+++|.-.++..
T Consensus 523 --~~~s-----v~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 523 --SPQS-----VENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred --cHHH-----HHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 1122 234567778888999999988877654
No 127
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.014 Score=55.99 Aligned_cols=241 Identities=18% Similarity=0.254 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 035507 263 NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKL 342 (684)
Q Consensus 263 ~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~l 342 (684)
..-++.|+-.|+++.... .+..+.+...+++ ...+.+++.+|+.... ..+++.|+..
T Consensus 19 l~~r~rALf~Lr~l~~~~-----------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l~~v 75 (289)
T KOG0567|consen 19 LQNRFRALFNLRNLLGPA-----------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVLVEV 75 (289)
T ss_pred HHHHHHHHHhhhccCChH-----------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHHHHH
Confidence 455666777777655432 1333344443333 3455566666666554 2456667666
Q ss_pred cCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC------------
Q 035507 343 LAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK------------ 408 (684)
Q Consensus 343 L~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~------------ 408 (684)
|.. ..+-||..|..+|+++. +. . .++.+-+.. +++-..+...+..++..+-...
T Consensus 76 l~desq~pmvRhEAaealga~~-~~-~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~ 143 (289)
T KOG0567|consen 76 LLDESQEPMVRHEAAEALGAIG-DP-E---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYI 143 (289)
T ss_pred hcccccchHHHHHHHHHHHhhc-ch-h---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCccc
Confidence 554 34566667777777764 21 1 122222222 4444444444444444432221
Q ss_pred ---CCCChhhhhchHHHHHHHhcCCc-HHH-HHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHH
Q 035507 409 ---PRPLFDQVRPALPALAQLIHSND-EQV-LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALW 483 (684)
Q Consensus 409 ---~~~~~~~~~~~l~~L~~lL~~~d-~~v-~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~ 483 (684)
|.++ ....-+.-+-..+.+.. +.. +..+...|.|+. .++. +-.++.-+..++.-.|..+..
T Consensus 144 SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g---~Eea---------I~al~~~l~~~SalfrhEvAf 209 (289)
T KOG0567|consen 144 SVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG---TEEA---------INALIDGLADDSALFRHEVAF 209 (289)
T ss_pred cCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC---cHHH---------HHHHHHhcccchHHHHHHHHH
Confidence 1111 11122333333333322 222 344555555543 3333 344555566778888999999
Q ss_pred HHHHHHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhH
Q 035507 484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDI 562 (684)
Q Consensus 484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v 562 (684)
++|.+-... .+|.|.+.|... +.+.+|.+|+.+|+.|+... .++.|.+.+.+.++-+
T Consensus 210 VfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~e~~~D~~~vv 267 (289)
T KOG0567|consen 210 VFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLKEYLGDEERVV 267 (289)
T ss_pred HHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHHHHcCCcHHHH
Confidence 999885422 577788877443 37899999999999997532 4667788888888888
Q ss_pred HHHHHHHHHHhh
Q 035507 563 KEEAAWAISNAS 574 (684)
Q Consensus 563 ~~~a~~aL~nl~ 574 (684)
++.+..+|.-+-
T Consensus 268 ~esc~valdm~e 279 (289)
T KOG0567|consen 268 RESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHH
Confidence 888877776554
No 128
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.075 Score=60.64 Aligned_cols=309 Identities=16% Similarity=0.158 Sum_probs=177.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.+..+.+.+++.|..++-.|+..+.++.++.+.. ++ ..++...++++.-.+.+..=.-|+-+|+.+|...--.-..
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 5566677777889999999999999999887622 11 2244555565554333455567888899888722111111
Q ss_pred HHhcCChHHHHHhcC--------CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHh----ccCCchHHHHHH
Q 035507 330 VIEHDAVPIFVKLLA--------SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQL----NEHTELSMLRIA 397 (684)
Q Consensus 330 i~~~g~i~~Li~lL~--------~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L----~~~~~~~v~~~a 397 (684)
+ ..++|.++.-|. +....||+.|+.+.+.++...... .+ .+.+..|...| .-+.+...++.|
T Consensus 418 l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l--~p~l~~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 418 L--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DL--KPVLQSLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred H--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hh--hHHHHHHHHHHHHHHhcCchhhHhHHH
Confidence 1 134555555442 235689999999999998544321 11 11233233332 245677888988
Q ss_pred HHHHHHhccCCCCC----Ch-----------------------hhhhchH-HHHHHHhc----CCcHHHHHHHHHHHHhh
Q 035507 398 TTTLSNLCRGKPRP----LF-----------------------DQVRPAL-PALAQLIH----SNDEQVLTDACWALFGL 445 (684)
Q Consensus 398 ~~~L~nL~~~~~~~----~~-----------------------~~~~~~l-~~L~~lL~----~~d~~v~~~al~~L~~L 445 (684)
..|+-......++. .. ...++.. |.+-+++. +=|..+++.+.++|..+
T Consensus 492 sAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~L 571 (1133)
T KOG1943|consen 492 SAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKL 571 (1133)
T ss_pred HHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 88887665442211 00 0001112 22223333 45889999999999998
Q ss_pred ccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChh-------hHHHHHhcC---ChHHHHH-Hhcc
Q 035507 446 SGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF-------QTQCIINHG---AVPCLLA-LLIH 514 (684)
Q Consensus 446 ~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-------~~~~~i~~g---~l~~L~~-lL~~ 514 (684)
+ . ........+.++.++......+...+.-+.-+.+.++.+... ..+.-+ ++ +++.+.. .+..
T Consensus 572 s-~----~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i-~~l~~ii~~~~~~~~~r 645 (1133)
T KOG1943|consen 572 S-L----TEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRI-AGLLSIIPPICDRYFYR 645 (1133)
T ss_pred H-H----hhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHh-hhhhhhccHHHHHHhcc
Confidence 8 3 333345557788888887777777776665555555432210 011111 12 2222222 2222
Q ss_pred CCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 515 NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 515 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
+...-++...+..+-++........+..+..+....+.+.+...+ .+|..|.++++.++.
T Consensus 646 g~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 646 GQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred chHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 212345666677777887665554444554445555555554444 788888898888875
No 129
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.0013 Score=67.77 Aligned_cols=300 Identities=14% Similarity=0.115 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhh-----CCCCCCchhHhhcCCHHH
Q 035507 306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVA-----ADSSGCRDLVLSEGALIP 380 (684)
Q Consensus 306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa-----~~~~~~r~~i~~~g~l~~ 380 (684)
..+|.+|..+|+.++.+-.-.+...++ ....+..-+....+.+++.+..++..+- .+.|+.-+.-...+.+-.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 368889999999888743333333322 2344444566688899999988887764 334432222222221111
Q ss_pred HH------HHhccCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHh-cCCcHHHHHHHHHHHHhhccCCChH
Q 035507 381 LL------AQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI-HSNDEQVLTDACWALFGLSGDRNND 452 (684)
Q Consensus 381 Ll------~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~al~~L~~L~~~~~~~ 452 (684)
++ ....++.....+..+|.+++++.... ..-+... ....+.+..-. .+++.-+...|.+++.-+. -....
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~-~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyV-LHp~l 424 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDR-QTLCITFLLGCNDSKNRLVKAAASRALGVYV-LHPCL 424 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcc-hhhhHHHHhcccchHHHHHHHHHHhhceeEE-eccch
Confidence 11 11222333456777888888887654 1111111 11222222222 2344557778888887655 34433
Q ss_pred HHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHc----CChh---hHHHHHhcCChHHHHHHh--ccCCChhHHHH
Q 035507 453 KIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM----GDDF---QTQCIINHGAVPCLLALL--IHNHKNSIKKE 523 (684)
Q Consensus 453 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~----~~~~---~~~~~i~~g~l~~L~~lL--~~~~~~~v~~~ 523 (684)
......-......+...+.+..-..|..|.|+++||+. +.+. +...+.. -.+..+...- .+..+.+|+..
T Consensus 425 r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~n 503 (728)
T KOG4535|consen 425 RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSN 503 (728)
T ss_pred hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhH
Confidence 34434444556667777777778899999999999974 2221 3333221 1122222222 12226789999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-------CHHHHH-HHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHH
Q 035507 524 VSWIISNIACGNREQIQAVIDAG-------LIGPLV-NLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLC 595 (684)
Q Consensus 524 a~~~L~nl~~~~~~~~~~l~~~g-------~l~~Li-~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~ 595 (684)
|..+|+|+.. ..+.+.+.+ -+..++ ........+|+-+||++++|+.....-.....=....+...|+
T Consensus 504 avraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~ 579 (728)
T KOG4535|consen 504 AVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALT 579 (728)
T ss_pred HHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHH
Confidence 9999999853 222222221 122222 2223457899999999999999843211100001122456666
Q ss_pred hhccC-CChHHHHHHHHHHH
Q 035507 596 DLLQC-ADPKIVTVCLEGLE 614 (684)
Q Consensus 596 ~lL~~-~~~~v~~~al~~L~ 614 (684)
.++.+ .+-+++..+..+|.
T Consensus 580 ~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 580 SLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred HHHHHhccceEeehhhhhhc
Confidence 66643 45455555555443
No 130
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.067 Score=58.62 Aligned_cols=139 Identities=15% Similarity=0.165 Sum_probs=75.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc---hhHH
Q 035507 252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS---ENTK 328 (684)
Q Consensus 252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~---~~~~ 328 (684)
..+.+.|.+++.+.+..|+..+..+.....+.-. ++..++++.-...+.+++.. +.....+.-... ....
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~------Llm~IiRfvlps~~~elKKL-ly~ywE~vPKt~~dgkl~~ 95 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPS------LLMTIIRFVLPSRNHELKKL-LYYYWELVPKTDSDGKLLH 95 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchH------HHHHHhheeeccCchHHHHH-HHHHHHHccccCCCcccHH
Confidence 4678889999999999999876665554432211 22333333322222455543 223333332111 1111
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
.++ =+-..+-.=|++|+.-+|-..++.|+.+= +.=+-...++.+..+| .+...-++++|..|+..+-..
T Consensus 96 EMI--Lvcna~RkDLQHPNEyiRG~TLRFLckLk-------E~ELlepl~p~Iracl-eHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 96 EMI--LVCNAYRKDLQHPNEYIRGSTLRFLCKLK-------EPELLEPLMPSIRACL-EHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHH--HHHHHHhhhccCchHhhcchhhhhhhhcC-------cHHHhhhhHHHHHHHH-hCcchhhhhhhheeehhHHhh
Confidence 111 01123334467788888888888887761 1111223345555555 677778888888777766554
No 131
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.1 Score=60.30 Aligned_cols=235 Identities=13% Similarity=0.050 Sum_probs=145.8
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHhccCCCC--CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHH
Q 035507 380 PLLAQLNEHTELSMLRIATTTLSNLCRGKPR--PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAV 457 (684)
Q Consensus 380 ~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~ 457 (684)
.+.....++.+..+++.+...|..++..++. .....+..+...+.+-+++.+...+...+.++..+. +..+.....+
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~-~~~~~e~~~~ 735 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLL-KLLSAEHCDL 735 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 4445555667889999999999999988421 122233556666777777788888999999998888 5544222223
Q ss_pred HHhchHHHHHHhcCCCCcccHhHHHHHHHHHHc-------CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507 458 IEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM-------GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN 530 (684)
Q Consensus 458 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~-------~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 530 (684)
+..-+.+.++.+ ++.+...+..|..+|-.++. +++. ....++ ..++.+...+-.. ...+......++..
T Consensus 736 i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~ 811 (1176)
T KOG1248|consen 736 IPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITH 811 (1176)
T ss_pred HHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHH
Confidence 333344444444 77888889999888888873 1111 011111 2333333333333 33333222444444
Q ss_pred HhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHH
Q 035507 531 IACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCL 610 (684)
Q Consensus 531 l~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al 610 (684)
+..........-.-.+++..+.-.+.....++++.|+.++.-++............ .-+++.+..+.++....++..+-
T Consensus 812 il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 812 ILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVR 890 (1176)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHH
Confidence 44322121111122235556666778889999999999999999866555444322 23788888888888888999988
Q ss_pred HHHHHHHhcc
Q 035507 611 EGLENILKVG 620 (684)
Q Consensus 611 ~~L~~il~~~ 620 (684)
..+..+++.-
T Consensus 891 ~LlekLirkf 900 (1176)
T KOG1248|consen 891 LLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHh
Confidence 8888888754
No 132
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.42 E-value=0.016 Score=56.93 Aligned_cols=235 Identities=16% Similarity=0.172 Sum_probs=146.2
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhc-hHHHHHHhcCC--CCcccHhHHHHHHHHHHcCChhhHHHH
Q 035507 423 LAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAG-VCGRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCI 499 (684)
Q Consensus 423 L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g-~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~ 499 (684)
+-++++.-++-.+.-|++++.++. ...+.+......+ .-.+++.+++. ....++...+.++.-++.... ..+.+
T Consensus 154 Lgkl~Q~i~~lTrlfav~cl~~l~--~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi 230 (432)
T COG5231 154 LGKLSQLIDFLTRLFAVSCLSNLE--FDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDI 230 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHH
Confidence 334455556667788889999988 3445555444443 44567777765 346788899999988875433 33211
Q ss_pred Hh-cCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHH-HhCCHHHHHHHhccC--CHhHHHHHHHHHHHhh
Q 035507 500 IN-HGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVI-DAGLIGPLVNLLQNA--EFDIKEEAAWAISNAS 574 (684)
Q Consensus 500 i~-~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~-~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~ 574 (684)
-. ...+..++++........|-+-++.++.|++. .....+..+. ..++.|...-+...+ |.+++...-..=..+.
T Consensus 231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 11 13556666766555467788899999999987 3334444333 444666555555443 5555433222211111
Q ss_pred c---------------------CCC--------HHHHHHHHHC--CChHHHHhhccCCChH-HHHHHHHHHHHHHhcccc
Q 035507 575 S---------------------RGT--------HDQIKYLVTE--GCIKPLCDLLQCADPK-IVTVCLEGLENILKVGEA 622 (684)
Q Consensus 575 ~---------------------~~~--------~~~~~~l~~~--g~l~~L~~lL~~~~~~-v~~~al~~L~~il~~~~~ 622 (684)
. ... ..+.+.+.+. .+++.|..+++...+. ....|+.-+..+.+..++
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 1 000 1234444433 3477788888877666 556666666666665543
Q ss_pred cccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 035507 623 EKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWC 673 (684)
Q Consensus 623 ~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~ 673 (684)
....+...|+-+.|.+|.+|++++|.-.|.+.++..-+
T Consensus 391 -------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 391 -------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred -------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 34778889999999999999999999999888876643
No 133
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.053 Score=55.81 Aligned_cols=245 Identities=17% Similarity=0.099 Sum_probs=171.4
Q ss_pred hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC---------hHHHHHHHHhchHHHHHHhcCCCCc------ccH
Q 035507 414 DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN---------NDKIQAVIEAGVCGRLVELLGHPSP------SVL 478 (684)
Q Consensus 414 ~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~---------~~~~~~~~~~g~l~~L~~lL~~~~~------~v~ 478 (684)
.....+++.++.+|.|++.+|..+.+..+..++ +.+ ..-+..+++.++++.|++-+..-+. .-.
T Consensus 121 lveln~V~slL~LLgHeNtDI~iavvdLLqELT-D~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv 199 (536)
T KOG2734|consen 121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELT-DEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGV 199 (536)
T ss_pred HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhh-hhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhh
Confidence 344678999999999999999999999999888 542 2457778888999999988865333 344
Q ss_pred hHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc
Q 035507 479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN 557 (684)
Q Consensus 479 ~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~ 557 (684)
..++..+-|++.-.+.....+.+.|.+..|+.-+... .-...+..|.-+++-+...+.+....+-.-+++..+++-+.-
T Consensus 200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence 5678889999998888888888889999988855332 234466777778887777655566656666777777776531
Q ss_pred ---C------CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCC
Q 035507 558 ---A------EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDS 628 (684)
Q Consensus 558 ---~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~ 628 (684)
. +.+.-.+.-.+||.+.. .+..+..+....++.-+.=+++. ....+..++..|...+-..+
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~------- 349 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPE------- 349 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCC-------
Confidence 1 34455666677777776 56777777777777655545554 55567778888877664322
Q ss_pred CCcchhHHHHHHHHhchHHHHHHh-hcCC---------CHHHHHHHHHHHHHhcC
Q 035507 629 DIGDINQFAQLVEEAEGLEKIENL-QSHD---------NNEIHEKSVKILETYWC 673 (684)
Q Consensus 629 ~~~~~~~~~~~i~~~g~~~~L~~L-~~~~---------~~~i~~~a~~ii~~~f~ 673 (684)
.-++|..+.+.+|+..+-.+ ...+ -.+.-++...||...|.
T Consensus 350 ----gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 350 ----GTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred ----chHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 22478888888889888776 3222 23344566666665554
No 134
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.41 E-value=0.00018 Score=52.86 Aligned_cols=55 Identities=38% Similarity=0.673 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHh
Q 035507 306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNV 361 (684)
Q Consensus 306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nL 361 (684)
+.+|..|+|+|++++...++.... ....+++.|+.+|.++++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 478999999999988766655555 4456799999999999999999999999986
No 135
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.051 Score=60.97 Aligned_cols=106 Identities=14% Similarity=0.185 Sum_probs=86.4
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
+-.++.+.+-+++.|+.+|-.|++.+..+= ...++ ..+++.+.+++.+++ +.+|..|+-|+.++-.-++
T Consensus 91 lLavNti~kDl~d~N~~iR~~AlR~ls~l~------~~el~-~~~~~~ik~~l~d~~-ayVRk~Aalav~kly~ld~--- 159 (757)
T COG5096 91 LLAVNTIQKDLQDPNEEIRGFALRTLSLLR------VKELL-GNIIDPIKKLLTDPH-AYVRKTAALAVAKLYRLDK--- 159 (757)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHhcC------hHHHH-HHHHHHHHHHccCCc-HHHHHHHHHHHHHHHhcCH---
Confidence 457888899999999999999999887741 12222 236789999999999 8999999999999987443
Q ss_pred HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCC
Q 035507 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~ 364 (684)
....+.|.+..+..++.+++|.+..+|+.+|..+...
T Consensus 160 ~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 160 DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 4556678899999999999999999999999998644
No 136
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.35 E-value=0.095 Score=56.45 Aligned_cols=304 Identities=16% Similarity=0.117 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHHHhcCCC--C---cHHHHHHcCCHHHHHHhhcCC----C--CHHHHHHHHHHHHHHhcCCchhHHHH
Q 035507 262 DNNLQLEATTQFQKLLSIES--M---PIEEVIESGVVPRFVEFLMRE----D--YPQLQFQAAWALTNIASGTSENTKVV 330 (684)
Q Consensus 262 ~~~~~~~a~~~L~~l~s~~~--~---~~~~ii~~g~i~~Lv~lL~~~----~--~~~v~~~A~~~L~~l~~~~~~~~~~i 330 (684)
+.+.-...+..+.+++.... . ......+..++|.+.++.... . ++.+-..+..++..+...-+.....-
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45566667777777766544 1 223334455888888777432 1 14555666666666665333333222
Q ss_pred HhcCChHHHHH-----hcC-CCC--hHHHHHHHHHHH-HhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHH
Q 035507 331 IEHDAVPIFVK-----LLA-SPS--DDVREQAVWALG-NVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTL 401 (684)
Q Consensus 331 ~~~g~i~~Li~-----lL~-~~~--~~v~~~a~~~L~-nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L 401 (684)
+-..+...+.. -+. ..+ .......+..+. -+++-.+.+.-. .....+..++.......++..+..++.++
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~l 214 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLL 214 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 21122222220 000 001 112222222222 233333222110 11125667777776677778888888888
Q ss_pred HHhccCCCCCChhhhhchHHHHHHHh-cCCc----HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcc
Q 035507 402 SNLCRGKPRPLFDQVRPALPALAQLI-HSND----EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPS 476 (684)
Q Consensus 402 ~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d----~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~ 476 (684)
+.+...-+... .....+..+...+ ...+ +....-..|...-+.-++++... .++..|+.++.+ +.
T Consensus 215 a~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~--~~ 284 (415)
T PF12460_consen 215 ASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS--PE 284 (415)
T ss_pred HHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC--hh
Confidence 88776532222 3344455444444 2222 33334444555444413332221 356778888877 66
Q ss_pred cHhHHHHHHHHHHcCChhh--------HHHHHhc----CChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH
Q 035507 477 VLTPALWTVGNIVMGDDFQ--------TQCIINH----GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID 544 (684)
Q Consensus 477 v~~~al~~L~nl~~~~~~~--------~~~~i~~----g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 544 (684)
+...|++.++-+....+.. .+.+... .++|.+++..... +...+.....+|+++..+.|..+-.---
T Consensus 285 ~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl~~~l 363 (415)
T PF12460_consen 285 LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVLLPEL 363 (415)
T ss_pred hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 7888889998888763322 2222232 3567777777766 6667888889999999877665433333
Q ss_pred hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC
Q 035507 545 AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG 577 (684)
Q Consensus 545 ~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~ 577 (684)
..++|.|++.|+.++.+++..++.++..+....
T Consensus 364 ~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 364 PTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 458999999999999999999999999998744
No 137
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.016 Score=59.47 Aligned_cols=222 Identities=14% Similarity=0.098 Sum_probs=162.8
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-----C----cHHHHHHcCCHHHHHHhhcCCC-----CHHHHHHH
Q 035507 247 KLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-----M----PIEEVIESGVVPRFVEFLMRED-----YPQLQFQA 312 (684)
Q Consensus 247 ~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-----~----~~~~ii~~g~i~~Lv~lL~~~~-----~~~v~~~A 312 (684)
.+.+++.++.+|..+|.++..+.+..+..+...+- . .++.+++.++++.|++-+..=+ ...-...+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 34688999999999999999999998888765432 2 3566788899999999886533 12334456
Q ss_pred HHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc----
Q 035507 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN---- 386 (684)
Q Consensus 313 ~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---- 386 (684)
+..+-|+..-.++....+++.|.+..|+.-+.. +...-...|..+|+-+-.++...+......+++..+++.+.
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 778889999899999999999988888874432 44556678888898888887766777778888888888874
Q ss_pred cC----CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh--HHHHHHHHh
Q 035507 387 EH----TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN--DKIQAVIEA 460 (684)
Q Consensus 387 ~~----~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~--~~~~~~~~~ 460 (684)
++ ...++..+...+|+.+..............++....-+++. ....+..++.+|-+.. .+++ .+...+++.
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am-~g~~gt~~C~kfVe~ 360 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAM-FGPEGTPNCNKFVEI 360 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHH-hCCCchHHHHHHHHH
Confidence 11 23567788888888877776555555556666665555554 5556778888888888 6665 677777887
Q ss_pred chHHHHHHhc
Q 035507 461 GVCGRLVELL 470 (684)
Q Consensus 461 g~l~~L~~lL 470 (684)
.++..++.+.
T Consensus 361 lGLrtiF~~F 370 (536)
T KOG2734|consen 361 LGLRTIFPLF 370 (536)
T ss_pred HhHHHHHHHH
Confidence 7777666554
No 138
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.002 Score=66.31 Aligned_cols=274 Identities=18% Similarity=0.144 Sum_probs=149.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcC-----CCCcHHHHHHcCCHHHHH------HhhcCCCCHHHHHHHHHHHHHHhcC
Q 035507 254 MVAGVWSDDNNLQLEATTQFQKLLSI-----ESMPIEEVIESGVVPRFV------EFLMREDYPQLQFQAAWALTNIASG 322 (684)
Q Consensus 254 lv~~L~s~~~~~~~~a~~~L~~l~s~-----~~~~~~~ii~~g~i~~Lv------~lL~~~~~~~v~~~A~~~L~~l~~~ 322 (684)
+...+...++++++.++..+.++... .+++.+.-...|-+-... ...-+...+..+..++.++.+|...
T Consensus 300 I~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~ 379 (728)
T KOG4535|consen 300 ICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPE 379 (728)
T ss_pred HHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCch
Confidence 33344556788888888887776532 111212111112111000 1111111246677778888887762
Q ss_pred CchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507 323 TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS 402 (684)
Q Consensus 323 ~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~ 402 (684)
..+.-..--....+..+...-.+.+.-++..|.++++-+.-+..-..+...-..+...++..+ .+..-..+..+.|+++
T Consensus 380 ~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~Kaawtlg 458 (728)
T KOG4535|consen 380 AFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLG 458 (728)
T ss_pred hhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhh
Confidence 211000000000111111122334555777888888877766644344444444555555555 4555678889999999
Q ss_pred HhccCC----CCCChhhhhchHHHHHHHhc------CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhc-------hHHH
Q 035507 403 NLCRGK----PRPLFDQVRPALPALAQLIH------SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAG-------VCGR 465 (684)
Q Consensus 403 nL~~~~----~~~~~~~~~~~l~~L~~lL~------~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g-------~l~~ 465 (684)
|++..- |.+......-.-..+..++. .....|..++.++|+++. ...+.+.+.+ .+..
T Consensus 459 nITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll-----Qvlq~i~~~~~~e~~~~~~~~ 533 (728)
T KOG4535|consen 459 NITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL-----QFLQPIEKPTFAEIIEESIQA 533 (728)
T ss_pred hhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH-----HHHHHhhhccHHHHHHHHHHh
Confidence 987653 44333222111122223332 245789999999999998 3333333332 2222
Q ss_pred HHHh-cCCCCcccHhHHHHHHHHHHcCChh-hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 466 LVEL-LGHPSPSVLTPALWTVGNIVMGDDF-QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 466 L~~l-L~~~~~~v~~~al~~L~nl~~~~~~-~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
+... ......+++-+||.+++|+..+..- ....-....+++.|..++.+..+.+||..|+.+|..-..
T Consensus 534 l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 534 LISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 2222 2235678999999999999876542 111112234678888888766588999999999987765
No 139
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.24 E-value=0.00071 Score=46.01 Aligned_cols=39 Identities=33% Similarity=0.687 Sum_probs=35.9
Q ss_pred chhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhh
Q 035507 324 SENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVA 362 (684)
Q Consensus 324 ~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa 362 (684)
++++..+.+.|+++.|+.++.++++.++..++|+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788889999999999999999999999999999996
No 140
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.023 Score=62.44 Aligned_cols=70 Identities=24% Similarity=0.326 Sum_probs=54.6
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
..+.+-.++.+.. ..+..+|+.++.++...++.... .++..|--+++++...+|-.|+++|..+|...|.
T Consensus 246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 4455666667666 79999999999998874433221 2678888889999999999999999999977765
No 141
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.15 E-value=0.019 Score=63.42 Aligned_cols=222 Identities=14% Similarity=0.093 Sum_probs=149.4
Q ss_pred CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCC-cHHHHHHHHHHHHhhc
Q 035507 368 CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSN-DEQVLTDACWALFGLS 446 (684)
Q Consensus 368 ~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~L~ 446 (684)
-|...+..|+...|+.+.. ...+..+..+..+|.. .-.-........++.+...++.. ...-...++.++.|++
T Consensus 496 ~~~~~Ik~~~~~aLlrl~~-~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLGQ-QQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred hcCccccccHHHHHHHHHH-HhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 4667778899999999884 3344666666666661 11111112234444444444422 2233456888999999
Q ss_pred cCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHh-cCChHHHHHHhccCCChhHHHHHH
Q 035507 447 GDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALLIHNHKNSIKKEVS 525 (684)
Q Consensus 447 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~-~g~l~~L~~lL~~~~~~~v~~~a~ 525 (684)
..++...+.+.+.-.++.+-.++...++..+..++..+.|+.-+..-..+.+.+ ...++.....+... +.....+++
T Consensus 571 -s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a 648 (748)
T KOG4151|consen 571 -SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA 648 (748)
T ss_pred -CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence 777777777888878888888888999999999999999999887766666666 34566666666665 777788888
Q ss_pred HHHHHHhcCChHHHH-HHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh
Q 035507 526 WIISNIACGNREQIQ-AVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDL 597 (684)
Q Consensus 526 ~~L~nl~~~~~~~~~-~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~l 597 (684)
.++..|+.-....+. ..--......+..++.+.+.+++......+.|+.. +..+.+..+.....+..+...
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHH
Confidence 887777664333333 22223467788889999999999999999999544 445555555555444444443
No 142
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.036 Score=53.35 Aligned_cols=256 Identities=19% Similarity=0.234 Sum_probs=157.5
Q ss_pred HHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhH
Q 035507 294 PRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372 (684)
Q Consensus 294 ~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i 372 (684)
..+.+.|...+ ...-+..|+..|.++... +.+..+.+...+++..++...+.+|+....
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~--------- 65 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQD--------- 65 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhcc---------
Confidence 34455554432 134566677777777762 225666666666656666677788887642
Q ss_pred hhcCCHHHHHHHhccC-CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh
Q 035507 373 LSEGALIPLLAQLNEH-TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN 451 (684)
Q Consensus 373 ~~~g~l~~Ll~~L~~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~ 451 (684)
..+++.++..+... ..+-++..|..+|..+.. ...++.+.+..+++-.++.+.+..++.++- ..+.
T Consensus 66 --~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle-~~~~ 132 (289)
T KOG0567|consen 66 --EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLE-WKDI 132 (289)
T ss_pred --chhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHH-Hhhc
Confidence 23578888888543 456677789999998873 245677777776666777777777776665 2211
Q ss_pred HHH----HHH--------HHhchHHHHHHhc-CCCCcc-cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCC
Q 035507 452 DKI----QAV--------IEAGVCGRLVELL-GHPSPS-VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHK 517 (684)
Q Consensus 452 ~~~----~~~--------~~~g~l~~L~~lL-~~~~~~-v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~ 517 (684)
... ... ...+-+..+-..| +...+. -|..|++.|.|+- .++ .+..|.+-+..+ +
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l~~~-S 200 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGLADD-S 200 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhcccc-h
Confidence 100 000 0001122222222 222222 2334555555542 222 244556666666 8
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHH
Q 035507 518 NSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLC 595 (684)
Q Consensus 518 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~ 595 (684)
.-.|.+++++++.+-... .+|.|.+.|.+. ++-+|.+|+.||+.++. ++ +++.|.
T Consensus 201 alfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~---------~~~vL~ 257 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---ED---------CVEVLK 257 (289)
T ss_pred HHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HH---------HHHHHH
Confidence 889999999999985432 577888877654 78899999999999974 33 466778
Q ss_pred hhccCCChHHHHHHHHHHHHHH
Q 035507 596 DLLQCADPKIVTVCLEGLENIL 617 (684)
Q Consensus 596 ~lL~~~~~~v~~~al~~L~~il 617 (684)
+++.+.++-|...+..+|..+-
T Consensus 258 e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHHHH
Confidence 8888888777777777776443
No 143
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.08 E-value=0.15 Score=57.23 Aligned_cols=233 Identities=15% Similarity=0.105 Sum_probs=150.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHH
Q 035507 302 REDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIP 380 (684)
Q Consensus 302 ~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~ 380 (684)
....|.+-..|.|++...++.........- -.+...+..+. +..+-++-.|+.+++..++...- . -..-+++..
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl-~--~~~p~ild~ 534 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVL-L--SLQPMILDG 534 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCceec-c--ccchHHHHH
Confidence 333477777888888877763221111110 11223333333 34556777788888877733211 1 112234556
Q ss_pred HHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc--CCcHHHHHHHHHHHHhhccCCChHHHHHHH
Q 035507 381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH--SNDEQVLTDACWALFGLSGDRNNDKIQAVI 458 (684)
Q Consensus 381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~~~~~~~~~ 458 (684)
|+++. ...+.++......+|+..|..+|.........+.|.+..++. ++||.+..-+-.++-.++ +. ..+.. -.
T Consensus 535 L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~-q~-~~~~g-~m 610 (1005)
T KOG2274|consen 535 LLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELL-QI-AANYG-PM 610 (1005)
T ss_pred HHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHH-HH-HHhhc-ch
Confidence 66655 556778888999999999999887777777888888777664 678888777777777777 31 11111 22
Q ss_pred HhchHHHHHHhcCCCC----cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 035507 459 EAGVCGRLVELLGHPS----PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG 534 (684)
Q Consensus 459 ~~g~l~~L~~lL~~~~----~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 534 (684)
....+|.+++.|..+. ......|+..|.-+.++.+.-.-..+-..++|.+.++.-+..+......+.-+|..+...
T Consensus 611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 3357899999998765 556667778888777766644333444567888888876655778888899999988876
Q ss_pred ChHHHHHHH
Q 035507 535 NREQIQAVI 543 (684)
Q Consensus 535 ~~~~~~~l~ 543 (684)
+.++...--
T Consensus 691 ~~eq~~t~~ 699 (1005)
T KOG2274|consen 691 TLEQLLTWH 699 (1005)
T ss_pred CHHHHHhhc
Confidence 666655444
No 144
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.05 E-value=0.0057 Score=50.50 Aligned_cols=93 Identities=11% Similarity=0.124 Sum_probs=67.9
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc
Q 035507 478 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN 557 (684)
Q Consensus 478 ~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~ 557 (684)
|..++.+|+.++.+-.......++ .+++.++..+.++ +.+||..||.+|.|++......+...+ ..+++.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 566777777777665544433332 5889999999999 999999999999999875434333222 3489999999999
Q ss_pred CCHhHHHHHHHHHHHhh
Q 035507 558 AEFDIKEEAAWAISNAS 574 (684)
Q Consensus 558 ~~~~v~~~a~~aL~nl~ 574 (684)
.++.||..| +.|-++.
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999987755 5555554
No 145
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.04 E-value=0.0016 Score=44.21 Aligned_cols=39 Identities=31% Similarity=0.652 Sum_probs=35.0
Q ss_pred hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 494 FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 494 ~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
+....+++.|+++.|++++.++ ++++++.|+|+|+|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 3667788999999999999987 99999999999999963
No 146
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.22 Score=56.55 Aligned_cols=349 Identities=15% Similarity=0.088 Sum_probs=182.8
Q ss_pred CHHHHHHHHHHHHHHhc---CCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHH
Q 035507 262 DNNLQLEATTQFQKLLS---IESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPI 338 (684)
Q Consensus 262 ~~~~~~~a~~~L~~l~s---~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~ 338 (684)
++.....|++.+..+++ ... +.+...+.=+++.+...++++. -.+|..|+|++..+++.+-.... .-..++..
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s-~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~--~l~~ale~ 506 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKS-PYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPN--NLSEALEL 506 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCC-chHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChH--HHHHHHHH
Confidence 34455556666655543 222 2223333334555555667766 68999999999999963222111 11234566
Q ss_pred HHHhcC-CCChHHHHHHHHHHHHhhCCCCCCchhHhh--cCCHHHHHHHhccCCchHHHHHHHHH-HHHhccCCCCCChh
Q 035507 339 FVKLLA-SPSDDVREQAVWALGNVAADSSGCRDLVLS--EGALIPLLAQLNEHTELSMLRIATTT-LSNLCRGKPRPLFD 414 (684)
Q Consensus 339 Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~--~g~l~~Ll~~L~~~~~~~v~~~a~~~-L~nL~~~~~~~~~~ 414 (684)
....|. +.+-.|+-.|+.||..+..+.+.....+.. -+.++.++.+.+.. +.+........ +..++..-.+-...
T Consensus 507 t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~-End~Lt~vme~iV~~fseElsPfA~e 585 (1010)
T KOG1991|consen 507 THNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV-ENDDLTNVMEKIVCKFSEELSPFAVE 585 (1010)
T ss_pred HHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHhhchhHHH
Confidence 666666 677789999999999998776543222221 12234444444322 22333333322 23333332333334
Q ss_pred hhhchHHHHHHHhcC---Cc---HHHHHHHHHHHHhhcc--C---CChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHH
Q 035507 415 QVRPALPALAQLIHS---ND---EQVLTDACWALFGLSG--D---RNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALW 483 (684)
Q Consensus 415 ~~~~~l~~L~~lL~~---~d---~~v~~~al~~L~~L~~--~---~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~ 483 (684)
....+.....+++.. .+ .+-...|..+|..+.. . ..++.. .-++.-+++.+-.+|++.-.++-+.++.
T Consensus 586 L~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl-~~le~~~l~vi~~iL~~~i~dfyeE~~e 664 (1010)
T KOG1991|consen 586 LCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVL-KQLEPIVLPVIGFILKNDITDFYEELLE 664 (1010)
T ss_pred HHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 446666666777763 22 2223333333322220 0 111111 1223345666777777777788888888
Q ss_pred HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHH-HhCCHHHHHHHhccC--C
Q 035507 484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVI-DAGLIGPLVNLLQNA--E 559 (684)
Q Consensus 484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~-~~g~l~~Li~ll~~~--~ 559 (684)
.+.+++...++..-.+. |+++.+.+.+... ....-....-++.|+.. |.+.....-. ..-++.....++.+. .
T Consensus 665 i~~~~t~~~~~Isp~mW--~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~ 741 (1010)
T KOG1991|consen 665 IVSSLTFLSKEISPIMW--GLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGE 741 (1010)
T ss_pred HHhhhhhhhcccCHHHH--HHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCc
Confidence 88888776654444444 4788888888887 67777888889998865 4432211110 111233333444442 2
Q ss_pred HhHHHHHHHHHHHhhcC--CCHHHHHHHHHCCChHHHHhhcc--CCChHHHHHHHHHHHHHHhccccc
Q 035507 560 FDIKEEAAWAISNASSR--GTHDQIKYLVTEGCIKPLCDLLQ--CADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 560 ~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~g~l~~L~~lL~--~~~~~v~~~al~~L~~il~~~~~~ 623 (684)
..=...|+..+.-++.. |-.+++..+ .++...+-+. ..+...+..+++.+.+-+.+.+..
T Consensus 742 D~d~~~a~kLle~iiL~~kg~~dq~ipl----f~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~l 805 (1010)
T KOG1991|consen 742 DSDCESACKLLEVIILNCKGLLDQYIPL----FLELALSRLTREVETSELRVMLLEVVINALYYNPKL 805 (1010)
T ss_pred hHHHHHHHHHHHHHHHHhcCcHhhHhHH----HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHH
Confidence 23334455555554431 222221111 1112222222 245567777787777777666543
No 147
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.39 Score=53.25 Aligned_cols=213 Identities=14% Similarity=0.179 Sum_probs=115.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
+...+.+.....+...+..|+++|..++.+.. ..+....+..+ -+.+ +.+...|+-.=..+...+.+...
T Consensus 101 vtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqai--------vd~~-~avSsaalvss~hll~~~~~~vk 171 (865)
T KOG1078|consen 101 VTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAI--------VDKN-PAVSSAALVSSYHLLPISFDVVK 171 (865)
T ss_pred hhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHe--------eccc-cccchHHHHHHhhhhcccHHHHH
Confidence 45666666666667777788888888765543 22222222222 2222 23332222211122221222222
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
... .+ ......+.+.-+|.+|+..|..+-... .+ ++..++..+..+.... ..|.|.+-......
T Consensus 172 rw~-ne----iqea~~s~~~m~QyHalglLyqirk~d-----rl----a~sklv~~~~~~~~~~--~~A~~~lir~~~~~ 235 (865)
T KOG1078|consen 172 RWA-NE----VQEAVNSDNIMVQYHALGLLYQIRKND-----RL----AVSKLVQKFTRGSLKS--PLAVCMLIRIASEL 235 (865)
T ss_pred HHH-Hh----hhhccCcHHHHHHHHHHHHHHHHHhhh-----HH----HHHHHHHHHccccccc--hhHHHHHHHHHHHH
Confidence 211 11 112223345578889999998884332 11 2344444442211110 01222222111111
Q ss_pred CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
-...........+.+-..+.+.+..+...+..++.++. ......... .+..|-.+++++...+|-.|.++|..+
T Consensus 236 l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~-~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkv 309 (865)
T KOG1078|consen 236 LKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLP-NTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKV 309 (865)
T ss_pred hhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcc-ccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 01112233566777888889999999999999999988 444433332 677788888999999999999999999
Q ss_pred HcCCh
Q 035507 489 VMGDD 493 (684)
Q Consensus 489 ~~~~~ 493 (684)
+...+
T Consensus 310 Am~~P 314 (865)
T KOG1078|consen 310 AMKHP 314 (865)
T ss_pred HHhCC
Confidence 87665
No 148
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.89 E-value=0.13 Score=55.70 Aligned_cols=229 Identities=15% Similarity=0.099 Sum_probs=146.7
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCCchhHHHHHhc-
Q 035507 259 WSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED----YPQLQFQAAWALTNIASGTSENTKVVIEH- 333 (684)
Q Consensus 259 ~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~----~~~v~~~A~~~L~~l~~~~~~~~~~i~~~- 333 (684)
.+.++.+..+|+++|+|++-.++..++..++.|..+.+++.|+... ..++.+...+.|.-++...+..+..+++.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 3567899999999999999988877888899999999999998761 27899999999998888888888777755
Q ss_pred CChHHHHHhcCC-----------------CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc--------C
Q 035507 334 DAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE--------H 388 (684)
Q Consensus 334 g~i~~Li~lL~~-----------------~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~--------~ 388 (684)
+++..++..|.. .+......++..+.|+..+.+.... -.....++.++..+.. .
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~ 200 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSP 200 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCC
Confidence 677777775531 1334566778888899866654322 0223344555444322 1
Q ss_pred CchHHHHHHHHHHHHhccCCC------------CCChhhhhchHHHHHHHhc----CC----cHHHHHHHHHHHHhhccC
Q 035507 389 TELSMLRIATTTLSNLCRGKP------------RPLFDQVRPALPALAQLIH----SN----DEQVLTDACWALFGLSGD 448 (684)
Q Consensus 389 ~~~~v~~~a~~~L~nL~~~~~------------~~~~~~~~~~l~~L~~lL~----~~----d~~v~~~al~~L~~L~~~ 448 (684)
+......+++.+|.|+--... ..........+..++.+|. .. -.+.....+.+|..++ .
T Consensus 201 ~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~-~ 279 (446)
T PF10165_consen 201 PLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA-R 279 (446)
T ss_pred cchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH-H
Confidence 234566777788877721110 0001111334444555443 11 2467888899999998 5
Q ss_pred CChHHHHHHHHhc-----------------hHHHHHHhcCCCCcccHhHHHHHHHHHHc
Q 035507 449 RNNDKIQAVIEAG-----------------VCGRLVELLGHPSPSVLTPALWTVGNIVM 490 (684)
Q Consensus 449 ~~~~~~~~~~~~g-----------------~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 490 (684)
.+...++ .+... +-.+|++++.++.+.++..+...+-.++.
T Consensus 280 ~~~~~Rk-~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 280 AAREVRK-YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred hcHHHHH-HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 5543333 33333 33456666666666666666666666654
No 149
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=1.7 Score=50.72 Aligned_cols=220 Identities=15% Similarity=0.148 Sum_probs=131.3
Q ss_pred HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh---chHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh-hhHHHHHh
Q 035507 426 LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA---GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIIN 501 (684)
Q Consensus 426 lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~ 501 (684)
..++.+..++..+...|..++ .... .+..... .+...|..-+++.....+..++.++..+....+ +..+. +.
T Consensus 662 ~e~~~~~~vQkK~yrlL~~l~-~~~s--~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~-i~ 737 (1176)
T KOG1248|consen 662 FENSSSTKVQKKAYRLLEELS-SSPS--GEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL-IP 737 (1176)
T ss_pred hhccccHHHHHHHHHHHHHHh-cCCc--hhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH-HH
Confidence 334568999999999999998 5421 1111211 244556666667777889999999999987766 33332 22
Q ss_pred cCChHHHHHHhccCCChhHHHHHHHHHHHHhc-------CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507 502 HGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-------GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS 574 (684)
Q Consensus 502 ~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~ 574 (684)
. .++.++-.+... +...|+.|..+|..|++ ++.. ....++ .+++.+..-+......++..-+.++..+.
T Consensus 738 k-~I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 738 K-LIPEVILSLKEV-NVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred H-HHHHHHHhcccc-cHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 2 344444444555 88899999999988873 1111 011111 13333333333333333333245555554
Q ss_pred c----CCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHH
Q 035507 575 S----RGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIE 650 (684)
Q Consensus 575 ~----~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~ 650 (684)
. ..+.+.. .++++.++.+|.+..++++..|+..+..+...-+... .... ....+..+-
T Consensus 814 ~e~~~~ld~~~l-----~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~-----------l~~~--~~~LL~sll 875 (1176)
T KOG1248|consen 814 QEFKNILDDETL-----EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEEC-----------LSPH--LEELLPSLL 875 (1176)
T ss_pred HHHhccccHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHH-----------Hhhh--HHHHHHHHH
Confidence 3 1122222 2367788888999999999999999998887655432 1111 122456666
Q ss_pred HhhcCCCHHHHHHHHHHHHHh
Q 035507 651 NLQSHDNNEIHEKSVKILETY 671 (684)
Q Consensus 651 ~L~~~~~~~i~~~a~~ii~~~ 671 (684)
.+.+.....+..++..+++++
T Consensus 876 ~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 876 ALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 676666667777777776665
No 150
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.63 E-value=0.076 Score=49.76 Aligned_cols=93 Identities=17% Similarity=0.251 Sum_probs=75.0
Q ss_pred CcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHH
Q 035507 474 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVN 553 (684)
Q Consensus 474 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ 553 (684)
++.+|..++.++|.++...+...+ ..+|.+...|.++ ++.||+.|..+|+.+...+.-. ++..++..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence 367899999999999987775444 4678999999999 9999999999999997643111 12234477788
Q ss_pred HhccCCHhHHHHHHHHHHHhhcC
Q 035507 554 LLQNAEFDIKEEAAWAISNASSR 576 (684)
Q Consensus 554 ll~~~~~~v~~~a~~aL~nl~~~ 576 (684)
.+.+.+++++..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999875
No 151
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.63 E-value=1.8 Score=49.07 Aligned_cols=228 Identities=12% Similarity=0.115 Sum_probs=152.3
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHH
Q 035507 343 LASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPA 422 (684)
Q Consensus 343 L~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~ 422 (684)
..+..|.+.-.+.|+++..+...+...... ...+...+..+..+..+.++..|+.++...|. +.......+.++..
T Consensus 459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 459 VYQESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDG 534 (1005)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHH
Confidence 345667777789999998775543322221 11234445555455566777788888877772 34444455778888
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC--CCCcccHhHHHHHHHHHHcCChhhHHHHH
Q 035507 423 LAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG--HPSPSVLTPALWTVGNIVMGDDFQTQCII 500 (684)
Q Consensus 423 L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~i 500 (684)
|.++......++......+|+..+ ..+++... ..++.+.|.++.+.. +++|.+...+-.++-.++..... ..-+
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv-~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~--~g~m 610 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVV-KLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN--YGPM 610 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHh-ccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh--hcch
Confidence 888888888999999999999999 66655443 555677888777753 35666666666666666542211 1112
Q ss_pred hcCChHHHHHHhccCCC----hhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh-ccCCHhHHHHHHHHHHHhhc
Q 035507 501 NHGAVPCLLALLIHNHK----NSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL-QNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 501 ~~g~l~~L~~lL~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll-~~~~~~v~~~a~~aL~nl~~ 575 (684)
....+|.++..|..+ . ......|...|.-+.++++.-....+-.-++|++.++. .++|.++-..|..+|..+..
T Consensus 611 ~e~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 611 QERLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 234789999999877 4 56777788888888776544444444445788888875 45688888899999999887
Q ss_pred CCCH
Q 035507 576 RGTH 579 (684)
Q Consensus 576 ~~~~ 579 (684)
.+.+
T Consensus 690 ~~~e 693 (1005)
T KOG2274|consen 690 VTLE 693 (1005)
T ss_pred cCHH
Confidence 6433
No 152
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.61 E-value=0.11 Score=48.55 Aligned_cols=93 Identities=20% Similarity=0.228 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHH
Q 035507 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA 510 (684)
Q Consensus 431 d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~ 510 (684)
|+.++..++.+++.++ ...+...+ ..++.+...|.++++.+|..|+.++..+...+--.. ...++..++.
T Consensus 1 ~~~vR~n~i~~l~DL~-~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLC-IRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHH-HhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence 5789999999999999 44433333 467899999999999999999999999986543111 1223477788
Q ss_pred HhccCCChhHHHHHHHHHHHHhcC
Q 035507 511 LLIHNHKNSIKKEVSWIISNIACG 534 (684)
Q Consensus 511 lL~~~~~~~v~~~a~~~L~nl~~~ 534 (684)
.+.++ +++|+..|..++..+...
T Consensus 71 ~l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHh
Confidence 88888 999999999999999864
No 153
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.60 E-value=0.0056 Score=50.57 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc--CCCChHHHHHHHHHHHHhhCCCCCCchhHh
Q 035507 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL--ASPSDDVREQAVWALGNVAADSSGCRDLVL 373 (684)
Q Consensus 309 ~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL--~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~ 373 (684)
+...+.+++|++..++...+.+.+.|++|.+++.. ...+|-+++.|++++-|++..+++.++.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55678899999999999999999999999999964 457899999999999999999887665554
No 154
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.59 E-value=0.016 Score=47.88 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=56.7
Q ss_pred cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChHHHHHHH
Q 035507 477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNREQIQAVI 543 (684)
Q Consensus 477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 543 (684)
.+...+++|+|++..++.....+.+.|++|.++....-+ .+|-+|+.|.|++.|++.++++....+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 456788999999999998899999999999999876432 3889999999999999999887766444
No 155
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.54 E-value=0.086 Score=54.28 Aligned_cols=202 Identities=11% Similarity=0.103 Sum_probs=139.4
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch-----hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHH
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD-----LVLSEGALIPLLAQLNEHTELSMLRIATTTLSN 403 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~-----~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~n 403 (684)
.+...+.+..|+..|..-+-+.+..+..+.+++.......+. .+... .-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 445568899999999998899999999999999876644332 22222 112222223333456666677777777
Q ss_pred hccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh---chHHHHHHhcCCCCcccHhH
Q 035507 404 LCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA---GVCGRLVELLGHPSPSVLTP 480 (684)
Q Consensus 404 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~ 480 (684)
.++...-.........+-.+.+.+..++-++..+|..++..+. ..........+.. .++.....+|.+++--++..
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~ll-t~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELL-TRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHH-HSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 7776432333333566666778888899999999999999877 5555555555555 46778889999999999999
Q ss_pred HHHHHHHHHcCChhh---HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 481 ALWTVGNIVMGDDFQ---TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 481 al~~L~nl~~~~~~~---~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
++..||.+....... ++.+-+..-+..++.+|.+. +..+|-+|..++--+++
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 999999998655422 23333455688999999998 99999999999988877
No 156
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.54 E-value=0.32 Score=55.51 Aligned_cols=175 Identities=17% Similarity=0.216 Sum_probs=114.9
Q ss_pred HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCCh--HHHHHHHHhCCHHHHHHHhccCCH-
Q 035507 484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR--EQIQAVIDAGLIGPLVNLLQNAEF- 560 (684)
Q Consensus 484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~--~~~~~l~~~g~l~~Li~ll~~~~~- 560 (684)
++.+++..++...+.+++.|++..+...+..-....++..+...++|++...+ +......... ...+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~-~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFID-FSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHhhcchh
Confidence 88899999999999999999999999999865577899999999999986321 1111111111 1222223333333
Q ss_pred hHHHHHHHHHHHhhcCCCH--------HHHHH--------------HHHCCChHH-HHhhcc-CCChHHHHHHHHHHHHH
Q 035507 561 DIKEEAAWAISNASSRGTH--------DQIKY--------------LVTEGCIKP-LCDLLQ-CADPKIVTVCLEGLENI 616 (684)
Q Consensus 561 ~v~~~a~~aL~nl~~~~~~--------~~~~~--------------l~~~g~l~~-L~~lL~-~~~~~v~~~al~~L~~i 616 (684)
+.-..|+..++.+...++. ..... ......+.+ +..++. +..+..+.+|++++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 6667778888877764321 00011 111222333 444444 34567788999999988
Q ss_pred HhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 035507 617 LKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH-DNNEIHEKSVKILETYW 672 (684)
Q Consensus 617 l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~-~~~~i~~~a~~ii~~~f 672 (684)
+....+ ++..+.+.|++..++++..+ .-.++.+.+..+++...
T Consensus 653 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 653 LEQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred HHcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 876433 67888999999999988433 26778888888887653
No 157
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.52 E-value=0.31 Score=49.92 Aligned_cols=197 Identities=12% Similarity=0.119 Sum_probs=121.9
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHH--HhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC--Chhh
Q 035507 420 LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVI--EAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG--DDFQ 495 (684)
Q Consensus 420 l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~--~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~--~~~~ 495 (684)
+...+..+.......+..++..+..+. ... ...+.+. ...++..+.+.++.+...-+..|+++++-++-. ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l-~~~-~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRAL-SSR-YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHH-Hhc-ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 333444555666888899988888776 221 1112221 123677788888877766667788877777643 2233
Q ss_pred HHHHHhcCChHHHHHHhccCC-ChhHHHHHHHHHHHHhc---CChHHHHHHHHhCCHHHHHH--Hhcc----------CC
Q 035507 496 TQCIINHGAVPCLLALLIHNH-KNSIKKEVSWIISNIAC---GNREQIQAVIDAGLIGPLVN--LLQN----------AE 559 (684)
Q Consensus 496 ~~~~i~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~g~l~~Li~--ll~~----------~~ 559 (684)
...+++ .+.|.|..++.++. ...+|..++.+|+-++. ...+.....++ .+..+.. ..+. ++
T Consensus 123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCc
Confidence 444444 57888888887662 34566667667776543 33344432222 2331211 1111 13
Q ss_pred HhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 560 FDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 560 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
+.+...|+.+.+-++............+ ..++.|..+|.+.+.+|+..|-++|.-+++....
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 5678888877777766545544443332 3589999999999999999999999999887764
No 158
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=0.22 Score=54.51 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=80.9
Q ss_pred hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh
Q 035507 414 DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD 493 (684)
Q Consensus 414 ~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 493 (684)
..+.+.+..+++...++|..|+..+|..|..+. + ....+...+-.++...+..-+.+..+.+|..|+.+|+.+-....
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~-d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLS-D-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHh-c-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 356777777778888899999999999999999 4 33444445555778888888899999999999999999863222
Q ss_pred hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507 494 FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII 528 (684)
Q Consensus 494 ~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L 528 (684)
+. +..+...+..+++..++++||+.|...+
T Consensus 159 de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 159 DE-----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred CC-----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 11 1235667788887776999999865433
No 159
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.078 Score=61.08 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=123.5
Q ss_pred HHHHHHhccCC-CCCChhhhhchHHHHHHHhc----CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC-
Q 035507 398 TTTLSNLCRGK-PRPLFDQVRPALPALAQLIH----SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG- 471 (684)
Q Consensus 398 ~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~----~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~- 471 (684)
..++..+|... -.........+.|.++.... .+||+++.+|.-+++.+. .-+..... .-+|.|+..+.
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM-~iSa~fce-----s~l~llftimek 971 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLM-CISAEFCE-----SHLPLLFTIMEK 971 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHh-hhhHHHHH-----HHHHHHHHHHhc
Confidence 34444455443 11123455677888888884 568999999999999888 44433322 35788999887
Q ss_pred CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHH
Q 035507 472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPL 551 (684)
Q Consensus 472 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L 551 (684)
++++.+|..++-++|.++-.-+...+ ..-+.|...|.+. ++.+|+.|..+|+++...+ .+--.|.++.+
T Consensus 972 sp~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eM 1040 (1251)
T KOG0414|consen 972 SPSPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEM 1040 (1251)
T ss_pred CCCceeeecchheccchhhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHH
Confidence 79999999999999999876664443 3456788888888 9999999999999997643 12235889999
Q ss_pred HHHhccCCHhHHHHHHHHHHHhhcCCC
Q 035507 552 VNLLQNAEFDIKEEAAWAISNASSRGT 578 (684)
Q Consensus 552 i~ll~~~~~~v~~~a~~aL~nl~~~~~ 578 (684)
..++.+++.+++..|-..+..+...++
T Consensus 1041 A~cl~D~~~~IsdlAk~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1041 ALCLEDPNAEISDLAKSFFKELSSKGN 1067 (1251)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhhccc
Confidence 999999999999999988888877653
No 160
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.13 Score=54.57 Aligned_cols=152 Identities=14% Similarity=0.187 Sum_probs=110.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHHH--hhccCCChHHHHHHHHhchHHHHHHh-cCCCCcccHhHHHHHHHHHHcCChhhHHH
Q 035507 422 ALAQLIHSNDEQVLTDACWALF--GLSGDRNNDKIQAVIEAGVCGRLVEL-LGHPSPSVLTPALWTVGNIVMGDDFQTQC 498 (684)
Q Consensus 422 ~L~~lL~~~d~~v~~~al~~L~--~L~~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~ 498 (684)
.+.+++.+.|+-.+.....+++ +.. .++ .|++..+++. ..+.+.++|..|+-+||-++..+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~G-Tgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~----- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVG-TGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR----- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhc-CCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc-----
Confidence 5667788888877777665553 333 222 3577788877 778899999999999999987665
Q ss_pred HHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC
Q 035507 499 IINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT 578 (684)
Q Consensus 499 ~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~ 578 (684)
..++..+++|..++++.||...+.+|+-.|+++..+. .+..|-.++.+...-+|+.|+.+++-+....+
T Consensus 585 ----~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 585 ----DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred ----chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 3567778888777799999999999999888764442 24455566677888899999999999988766
Q ss_pred HHHHHHHHHCCChHHHHhhccCC
Q 035507 579 HDQIKYLVTEGCIKPLCDLLQCA 601 (684)
Q Consensus 579 ~~~~~~l~~~g~l~~L~~lL~~~ 601 (684)
++.... -.++++.+.+++...
T Consensus 654 ~~Lnp~--v~~I~k~f~~vI~~K 674 (926)
T COG5116 654 PELNPN--VKRIIKKFNRVIVDK 674 (926)
T ss_pred cccChh--HHHHHHHHHHHHhhh
Confidence 654333 223566666666543
No 161
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.51 Score=51.94 Aligned_cols=169 Identities=17% Similarity=0.148 Sum_probs=109.2
Q ss_pred hHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh-ccCCChhHHHHHHHHHHHHhcCChHHHH
Q 035507 462 VCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL-IHNHKNSIKKEVSWIISNIACGNREQIQ 540 (684)
Q Consensus 462 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 540 (684)
+=+.+-+++.+.++-+|...+.+++---.++. +.+++..|+.+- ++. +.+||+.|.-+|+-++..++++
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~-- 589 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQ-- 589 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhccccccc-chHHHHHHHHHheeeEecChhh--
Confidence 44556677788888888887776655444333 124566677764 455 8999999999999999887765
Q ss_pred HHHHhCCHHHHHHHhccC-CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 541 AVIDAGLIGPLVNLLQNA-EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 541 ~l~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
.|..+.+|... ++.||.-|+.||+-.+.+..... ++..|..+..++..-|++.|+-++.-|+--
T Consensus 590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence 45566777655 99999999999998887543222 233444455566666888898888877754
Q ss_pred ccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHH
Q 035507 620 GEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILE 669 (684)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~ 669 (684)
..... ++-.. |..+.++.+....+++.-.+--.|+.
T Consensus 655 ~t~~~---------~pkv~-----~frk~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 655 QTEQL---------CPKVN-----GFRKQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred ccccc---------CchHH-----HHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 32221 11111 22344566655666665555555554
No 162
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.41 E-value=0.098 Score=47.00 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=99.9
Q ss_pred HHHHHHhchHHHHHHhcCCCCc------ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCC-ChhHHHHHHH
Q 035507 454 IQAVIEAGVCGRLVELLGHPSP------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KNSIKKEVSW 526 (684)
Q Consensus 454 ~~~~~~~g~l~~L~~lL~~~~~------~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-~~~v~~~a~~ 526 (684)
...++..+++..|++++.++.. .+...++.++..+..+.- ..-..++..++..+........ +..+...|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3567788899999999977653 556667777777776543 2223445566778888887653 6789999999
Q ss_pred HHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHH
Q 035507 527 IISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYL 585 (684)
Q Consensus 527 ~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 585 (684)
.|-+++..++...+.+.+.=-++.|+..++..+.+++..|...+-.+...++.+.++.+
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999988766666666655699999999999999999999999999888777666543
No 163
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.40 E-value=0.02 Score=63.98 Aligned_cols=190 Identities=15% Similarity=0.103 Sum_probs=128.7
Q ss_pred ChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch--------hHhh----cCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507 335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD--------LVLS----EGALIPLLAQLNEHTELSMLRIATTTLS 402 (684)
Q Consensus 335 ~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~--------~i~~----~g~l~~Ll~~L~~~~~~~v~~~a~~~L~ 402 (684)
+...|+.+|+. +++-..++.++.-+..|++.++. .+.. ..++|.+++... ..+...+.+...+|+
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-TAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-cCCccchhHHHHHHH
Confidence 34566666665 34455677777777766653211 1111 235677777774 555667778888999
Q ss_pred HhccCCCCCC-hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCC---cccH
Q 035507 403 NLCRGKPRPL-FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS---PSVL 478 (684)
Q Consensus 403 nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~v~ 478 (684)
++..+-|... ......++|.|++.|.-+|..++..++.++.-+. .....-...-++ -++|.++.+=.+++ ..+|
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l-~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLL-TESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHH-HhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence 9888655422 2234778899999999999999999999998777 433322222222 36788887766655 5789
Q ss_pred hHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507 479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN 530 (684)
Q Consensus 479 ~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 530 (684)
..|+.++..+++..+...-......++..|.+.|.++ ..-||++|..+=.+
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence 9999999999985553332333446788899999988 88899999876444
No 164
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.34 E-value=0.026 Score=62.38 Aligned_cols=216 Identities=13% Similarity=0.064 Sum_probs=138.4
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
.|....+.++..-..+..++.+..+|..-.+...... ..+++.+...+.....-.-..+++.+++|+++.+...+
T Consensus 503 ~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r 577 (748)
T KOG4151|consen 503 PGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR 577 (748)
T ss_pred ccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence 3566666666666667777777777762222221111 13556666665543323445678999999999888888
Q ss_pred HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
..+...-+++.+-.++...++.++..++..+.||.-.+--+...+.+...=.++........+......++.++..+...
T Consensus 578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv 657 (748)
T KOG4151|consen 578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV 657 (748)
T ss_pred HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc
Confidence 88888777777777788889999999999999998665433334444222223333332334445555555555433333
Q ss_pred CC--CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHh
Q 035507 408 KP--RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVEL 469 (684)
Q Consensus 408 ~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~l 469 (684)
.. .............+..++.+.+++++...+..+.++. ....+....+.....++.+..+
T Consensus 658 ~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~-~~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 658 VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF-EALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH-HHHHHHHHHhccchHHHHHHHH
Confidence 21 1114445666778888999999999999999999977 6666666666666666655544
No 165
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.28 E-value=0.31 Score=50.24 Aligned_cols=205 Identities=12% Similarity=0.103 Sum_probs=144.6
Q ss_pred HHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh-----HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507 455 QAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ-----TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS 529 (684)
Q Consensus 455 ~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-----~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 529 (684)
+.+...+.+..|+..|..-+-+.+..+..+.+++....... .+.+.. ..-..+..++...+++++--.+...|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence 45667789999999998888889999999999998654322 333332 212233333333225566667777777
Q ss_pred HHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHC---CChHHHHhhccCCChHHH
Q 035507 530 NIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTE---GCIKPLCDLLQCADPKIV 606 (684)
Q Consensus 530 nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---g~l~~L~~lL~~~~~~v~ 606 (684)
.++.. +.....++....+..+.+.++.++.++...|...+..+... .+.....+... .....+..++.+++.-++
T Consensus 149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 77665 45667778888888999999999999999999999998874 34444444433 346678889999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507 607 TVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 607 ~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f 672 (684)
..++..|..++-.-... +.....+....-+..+..|..+++..|+-.|..+..-|.
T Consensus 227 rqslkLL~ellldr~n~----------~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNF----------NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHHHHHHHHHHSGGGH----------HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHH----------HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 99999999999764332 234566777777888899999999999999999887553
No 166
>PRK14707 hypothetical protein; Provisional
Probab=96.27 E-value=2.9 Score=51.78 Aligned_cols=386 Identities=16% Similarity=0.124 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH
Q 035507 263 NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFL-MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK 341 (684)
Q Consensus 263 ~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~ 341 (684)
......+++.-+.+...+ .+...+- .--+..++.-+ +.+++.+.+..+...-..++. ++..+..+ +..+|..++.
T Consensus 137 ~~c~~a~a~i~~~~~~~~-~~~~~l~-~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lN 212 (2710)
T PRK14707 137 GRCERAVARLARHLRRED-KARQTLN-AQNISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLN 212 (2710)
T ss_pred hHHHHHHHHHHHHhcccc-chhhhhc-cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHH
Confidence 344444455555544332 2222221 12234444444 334556777777777777776 44555554 4445777777
Q ss_pred hcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH-HhccCCCCCChhhh-hc
Q 035507 342 LLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS-NLCRGKPRPLFDQV-RP 418 (684)
Q Consensus 342 lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~-nL~~~~~~~~~~~~-~~ 418 (684)
-++. ++..-.++++..|.....+....+..+ +...+...++.|.+-++...-.+++.++. .+.+.. ....... ..
T Consensus 213 a~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~al~~q~ 290 (2710)
T PRK14707 213 ALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDP-GLRKALDPIN 290 (2710)
T ss_pred HHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHHhcCHHH
Confidence 6665 544444556666654443333433333 33345666777767777766666655554 454442 2222222 33
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHHH-hhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHH
Q 035507 419 ALPALAQLIHSNDEQVLTDACWALF-GLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ 497 (684)
Q Consensus 419 ~l~~L~~lL~~~d~~v~~~al~~L~-~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 497 (684)
+-..+..+-..+|..+-..+...|. .+. .+.+..+.+-..++-..|-.+-+-++..+...|...|..=...++...+
T Consensus 291 vanalNalSKwpd~~vc~~Aa~~la~rl~--~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~ 368 (2710)
T PRK14707 291 VTQALNALSKWADLPVCAEAAIALAERLA--DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK 368 (2710)
T ss_pred HHHHHhhhhcCCCchHHHHHHHHHHHHHh--ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc
Confidence 3334444445667666666555554 555 3444444333334433444444557777777777766665555555554
Q ss_pred HHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc-cCCHhHHHHHHHHHHHhhcC
Q 035507 498 CIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ-NAEFDIKEEAAWAISNASSR 576 (684)
Q Consensus 498 ~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~-~~~~~v~~~a~~aL~nl~~~ 576 (684)
.+ +...+..++.-+..-++..+-..|+..|..=..++++....+-..|+ ...++.++ =++..+...|+.+|..-..
T Consensus 369 ~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~v-an~lnalsKWPd~~~C~~aa~~lA~~la- 445 (2710)
T PRK14707 369 DL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGV-SNALNALAKWPDLPICGQAVSALAGRLA- 445 (2710)
T ss_pred cc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhH-HHHHHHhhcCCcchhHHHHHHHHHHHHh-
Confidence 33 34455555555554436666677777766555566565555544444 44444444 4577888888877776655
Q ss_pred CCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCC
Q 035507 577 GTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD 656 (684)
Q Consensus 577 ~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~ 656 (684)
.+.+.++.|--.++...|-.+-+.+|..+...+.+.|..=+..... +++.|.-.+....|..|-..+
T Consensus 446 ~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~P 512 (2710)
T PRK14707 446 HDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWP 512 (2710)
T ss_pred ccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCC
Confidence 3566666665566666666677788888887777777665544322 456666666777888888888
Q ss_pred CHHHHHHHHHHHHHhc
Q 035507 657 NNEIHEKSVKILETYW 672 (684)
Q Consensus 657 ~~~i~~~a~~ii~~~f 672 (684)
+...+..|..-|..-.
T Consensus 513 d~~~c~~A~~~lA~rl 528 (2710)
T PRK14707 513 DTPICAEAASALAERV 528 (2710)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 8777766666555443
No 167
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.16 E-value=0.31 Score=49.88 Aligned_cols=192 Identities=16% Similarity=0.129 Sum_probs=116.0
Q ss_pred hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhc--CCHHHHHHHhccCCchHHHHHHHHHHHHhccC--CCCC
Q 035507 336 VPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE--GALIPLLAQLNEHTELSMLRIATTTLSNLCRG--KPRP 411 (684)
Q Consensus 336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~--g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~--~~~~ 411 (684)
+...+..+.......|+.++..+.++...... .+.+... -.+..+...+++... +-+..|+.++.-++-. ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCcc
Confidence 34445555666788888888888887755432 2333221 135556666655444 3445566666666544 2344
Q ss_pred ChhhhhchHHHHHHHhcCCc--HHHHHHHHHHHHhhcc--CCChHHHHHHHHhchHHHHHH--hcCC----------CCc
Q 035507 412 LFDQVRPALPALAQLIHSND--EQVLTDACWALFGLSG--DRNNDKIQAVIEAGVCGRLVE--LLGH----------PSP 475 (684)
Q Consensus 412 ~~~~~~~~l~~L~~lL~~~d--~~v~~~al~~L~~L~~--~~~~~~~~~~~~~g~l~~L~~--lL~~----------~~~ 475 (684)
.......+.|.|.+.+.+.. ..++..++.+|+-+++ ....+.....++ .+..+.. ..+. +++
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 55666888899999888654 4555666666665542 223333331112 2332211 1211 235
Q ss_pred ccHhHHHHHHHHHHcCChhh-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 476 SVLTPALWTVGNIVMGDDFQ-TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 476 ~v~~~al~~L~nl~~~~~~~-~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
.+...|+.+.+-+.+.-+.. ....+ ...+|.|..+|.++ +..||..|..+|.-|..
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 68889999888888766642 22222 35689999999999 99999999999887754
No 168
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.06 E-value=0.76 Score=50.25 Aligned_cols=290 Identities=15% Similarity=0.129 Sum_probs=145.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhc
Q 035507 296 FVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE 375 (684)
Q Consensus 296 Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~ 375 (684)
++...+ ++ +..+..|+..+......-|+.... ++..++++..+.+..||.+|+..|..+|.+.+.....+
T Consensus 28 il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--- 97 (556)
T PF05918_consen 28 ILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--- 97 (556)
T ss_dssp HHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred HHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence 344444 34 688889999999988877776654 57788999999999999999999999999987654433
Q ss_pred CCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc---CCcHHHHHHHHHHHHhhccCCChH
Q 035507 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH---SNDEQVLTDACWALFGLSGDRNND 452 (684)
Q Consensus 376 g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~al~~L~~L~~~~~~~ 452 (684)
...|.++| +..+..-...+-.+|..+...++ .+.+..+...+. .+|+.+++.++..|..-...-..+
T Consensus 98 --aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 98 --ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp --HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred --HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence 55777777 55555555566666666655432 344444444444 578888999887774222022111
Q ss_pred HHH--HHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHc----CChhhHHHHHhcCChHHHHHHh------ccCCChhH
Q 035507 453 KIQ--AVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM----GDDFQTQCIINHGAVPCLLALL------IHNHKNSI 520 (684)
Q Consensus 453 ~~~--~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~----~~~~~~~~~i~~g~l~~L~~lL------~~~~~~~v 520 (684)
... .-.+.-++..+-+.|.+-...--...+.+|..+-. .+....+.+ ++.+.... ... +++.
T Consensus 168 ~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~e~ 241 (556)
T PF05918_consen 168 LLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DPES 241 (556)
T ss_dssp TS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SHHH
T ss_pred HhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CHHH
Confidence 111 22233345566677765333223334445555543 122333333 33333332 112 3333
Q ss_pred HHHHHHHHHH-H---hc--CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHH
Q 035507 521 KKEVSWIISN-I---AC--GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPL 594 (684)
Q Consensus 521 ~~~a~~~L~n-l---~~--~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L 594 (684)
......++.. + .. .+.....++.+ .++|.+-.+ ..+.+-..+.++.-++..........+ ++.+
T Consensus 242 Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~-----L~~i 311 (556)
T PF05918_consen 242 IDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQL-----LPSI 311 (556)
T ss_dssp HHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHH-----HHHH
T ss_pred HHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHH-----HHHH
Confidence 3222222222 2 22 23344444444 477766555 456677788888888775543223332 3344
Q ss_pred Hhhcc----C--CChH----HHHHHHHHHHHHHhccc
Q 035507 595 CDLLQ----C--ADPK----IVTVCLEGLENILKVGE 621 (684)
Q Consensus 595 ~~lL~----~--~~~~----v~~~al~~L~~il~~~~ 621 (684)
.++|. . ..++ .++..+.++..+....+
T Consensus 312 ~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p 348 (556)
T PF05918_consen 312 FQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP 348 (556)
T ss_dssp HHHHHTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence 44442 2 2333 46666777776666544
No 169
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.3 Score=54.64 Aligned_cols=227 Identities=10% Similarity=0.042 Sum_probs=144.2
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHH
Q 035507 380 PLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIE 459 (684)
Q Consensus 380 ~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~ 459 (684)
..+..+ .++...++..++..++.+.+...........+++......+.+.|+-+--+|+..+..+| +. ..
T Consensus 731 eai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lc-ev--------y~ 800 (982)
T KOG4653|consen 731 EAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLC-EV--------YP 800 (982)
T ss_pred HHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHH-Hh--------cc
Confidence 334444 556678899999999999997655566667889999999999999999999999999998 43 33
Q ss_pred hchHHHHHHhc-CC---CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC
Q 035507 460 AGVCGRLVELL-GH---PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN 535 (684)
Q Consensus 460 ~g~l~~L~~lL-~~---~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 535 (684)
..++|.+.+.- .. ..++.+...-.++++++..-.+....-.+ -++..++...+++ +...|..++..+++++.-.
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLL 878 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHH
Confidence 45677777743 22 11344444556677766543333222222 3556667777777 7788999999999998643
Q ss_pred hHHHHHHHHhCCHHHHHHHhcc-CCHhHHHHHHHHHHHhhcCCCHHHHHHH--HHCCChHHHHhhccC-CChHHHHHHHH
Q 035507 536 REQIQAVIDAGLIGPLVNLLQN-AEFDIKEEAAWAISNASSRGTHDQIKYL--VTEGCIKPLCDLLQC-ADPKIVTVCLE 611 (684)
Q Consensus 536 ~~~~~~l~~~g~l~~Li~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~g~l~~L~~lL~~-~~~~v~~~al~ 611 (684)
.......+. .++..++.+.+. +.+-+|+.|+..+..+..+-+.+....+ ...+..+.+..+... ++..++..+..
T Consensus 879 a~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql 957 (982)
T KOG4653|consen 879 AFQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL 957 (982)
T ss_pred hhhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 322222221 245555665554 5788999999999999886554443322 122334444444443 34444445555
Q ss_pred HHHHHHhc
Q 035507 612 GLENILKV 619 (684)
Q Consensus 612 ~L~~il~~ 619 (684)
++..+-..
T Consensus 958 ~leei~a~ 965 (982)
T KOG4653|consen 958 CLEEIQAA 965 (982)
T ss_pred HHHHHHHH
Confidence 55444433
No 170
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.05 E-value=0.14 Score=49.75 Aligned_cols=186 Identities=10% Similarity=0.117 Sum_probs=123.2
Q ss_pred cHHHHHHHHHHHHhhccCCChHHHHHHHHh-chHHHHHHhc-------CCCC--c---ccHhHHHHHHHHHHcCChhhHH
Q 035507 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEA-GVCGRLVELL-------GHPS--P---SVLTPALWTVGNIVMGDDFQTQ 497 (684)
Q Consensus 431 d~~v~~~al~~L~~L~~~~~~~~~~~~~~~-g~l~~L~~lL-------~~~~--~---~v~~~al~~L~nl~~~~~~~~~ 497 (684)
+++.++.|+.-|+.-- +..++....+..+ |.+..|++=+ ..+. + .-...|+..+..+|. +++.+.
T Consensus 8 ~~~~Re~Al~eLsk~r-~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 8 NPETRENALLELSKKR-ESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SHHHHHHHHHHHHHTC-CC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred CcchHHHHHHHHHHhh-hcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 6777888888888776 5556666666666 6666654433 2222 1 112345555555666 455777
Q ss_pred HHHhcCChHHHHHHhccCC----ChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHH
Q 035507 498 CIINHGAVPCLLALLIHNH----KNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN 572 (684)
Q Consensus 498 ~~i~~g~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~n 572 (684)
.++++.+.-.|...|+... -+.+|-.+..+++.+.. ++++.+.++.+.+++|..++.|+.++.-.|..|...+..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8999998877888775441 24688888999999987 678889999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHH--------CCChHHHHh-hccCCChHHHHHHHHHHHHHHhcc
Q 035507 573 ASSRGTHDQIKYLVT--------EGCIKPLCD-LLQCADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 573 l~~~~~~~~~~~l~~--------~g~l~~L~~-lL~~~~~~v~~~al~~L~~il~~~ 620 (684)
+.. +.....|+.. ..++..++. +...+++.+.+.++.+..++.+..
T Consensus 166 IL~--dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 166 ILL--DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHc--chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 887 3333333211 113444443 345678889999888888877654
No 171
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.15 Score=56.99 Aligned_cols=223 Identities=10% Similarity=0.073 Sum_probs=139.0
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcC
Q 035507 297 VEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEG 376 (684)
Q Consensus 297 v~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g 376 (684)
+..+.++. +.++..|+..|..+... .+....+...+++...+..|.+.++-+--+|+..+..+|..-|+ .
T Consensus 733 i~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~ 802 (982)
T KOG4653|consen 733 ISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------D 802 (982)
T ss_pred HHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------h
Confidence 33444444 67899999999999983 35556666778999999999999999988999988888755332 3
Q ss_pred CHHHHHHHhccCC---chHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHH
Q 035507 377 ALIPLLAQLNEHT---ELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDK 453 (684)
Q Consensus 377 ~l~~Ll~~L~~~~---~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~ 453 (684)
.++-+...-.+.. ..+.+-..-.++.++.+....-.......++..++..++++|...+..++..+++++ ......
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lc-q~~a~~ 881 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLC-QLLAFQ 881 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHH-HHHhhh
Confidence 4555555321111 123333344666666655433333344566777778888888888999999999999 433322
Q ss_pred HHHHHHhchHHHHHHhcC-CCCcccHhHHHHHHHHHHcCChhhHHHHHhc---CChHHHHHHhccCCChhHHHHHHHHHH
Q 035507 454 IQAVIEAGVCGRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINH---GAVPCLLALLIHNHKNSIKKEVSWIIS 529 (684)
Q Consensus 454 ~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~---g~l~~L~~lL~~~~~~~v~~~a~~~L~ 529 (684)
....+ ..++..++.+.+ +++..+|.+|+..+..+..+.....-.+... .....+........+..++..|+.++-
T Consensus 882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 22211 123444555543 5678899999999999988776333222211 122333333333325556666666654
Q ss_pred HH
Q 035507 530 NI 531 (684)
Q Consensus 530 nl 531 (684)
.+
T Consensus 961 ei 962 (982)
T KOG4653|consen 961 EI 962 (982)
T ss_pred HH
Confidence 44
No 172
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.97 E-value=3.2 Score=45.34 Aligned_cols=288 Identities=14% Similarity=0.105 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH
Q 035507 263 NNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK 341 (684)
Q Consensus 263 ~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~ 341 (684)
...+..|+..++..+...+ .++..+.. ..-.++.....++.|..|...|..++.+...... ....-....
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~iW~-----~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R~~fF~~--- 74 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEEIWY-----AAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMRAEFFRD--- 74 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHH-----HHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHHHHHHHH---
Confidence 3556677777777666544 33333322 2224455554468999999999999885443111 111111111
Q ss_pred hcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC--------------------------chHHHH
Q 035507 342 LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT--------------------------ELSMLR 395 (684)
Q Consensus 342 lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~--------------------------~~~v~~ 395 (684)
+-....++-...-+.+|..|+.++... + ..+.+..+.+...+.... +.....
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDI-D-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 122233434445566677777665443 1 134555555555552110 222333
Q ss_pred HHHHHHHHhccCC-CCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhcc--CCChHHHHHHHHhchHHHHHHhcC
Q 035507 396 IATTTLSNLCRGK-PRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLSG--DRNNDKIQAVIEAGVCGRLVELLG 471 (684)
Q Consensus 396 ~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~--~~~~~~~~~~~~~g~l~~L~~lL~ 471 (684)
.....+.|+.... .......+.+++..++.+.. +.++.....++..+-.+.. .-+.+... .++..|....
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~- 226 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV- 226 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh-
Confidence 4445555555554 33333444555555555533 2233333444444433330 11111111 1233343332
Q ss_pred CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc--C---CChhHHHHHHHHHHHHhcCChHHHHHHHH-h
Q 035507 472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH--N---HKNSIKKEVSWIISNIACGNREQIQAVID-A 545 (684)
Q Consensus 472 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~--~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~ 545 (684)
...+....+-+++.|++...-.+. .+..|..+|.+ + .+..+.+-|...+..+..+..++...-+. .
T Consensus 227 -~~~~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 227 -NSVSLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred -cccccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 233677788889999986443221 34567777722 1 14556678888888887654222222221 1
Q ss_pred --CCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 546 --GLIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 546 --g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
-++|.+...++..+..+-.+....+.++..
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 278899999998888777788888888873
No 173
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=2.6 Score=46.82 Aligned_cols=300 Identities=16% Similarity=0.079 Sum_probs=162.9
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc--CCchhHHHHHhcCChHH
Q 035507 268 EATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRE-------DYPQLQFQAAWALTNIAS--GTSENTKVVIEHDAVPI 338 (684)
Q Consensus 268 ~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~-------~~~~v~~~A~~~L~~l~~--~~~~~~~~i~~~g~i~~ 338 (684)
+|+..+..+.+..++. --.|+++.++..|... +++.-.+-|++.+.++.+ ..+....-+.+.-+++.
T Consensus 389 aal~fl~~~~sKrke~----TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 389 AALFFLIISKSKRKEE----TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred HHHHHHHHHhcccchh----hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 3455555544443321 1258899999998431 123344456677777665 34444555666667788
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC--Chhhh
Q 035507 339 FVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP--LFDQV 416 (684)
Q Consensus 339 Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~--~~~~~ 416 (684)
++..++++.--++.+|+..++.+..+- .+...-..+.+....+++ +.+..+.-.|+-|+.-+..+.... -...+
T Consensus 465 v~P~f~s~ygfL~Srace~is~~eeDf---kd~~ill~aye~t~ncl~-nn~lpv~ieAalAlq~fi~~~q~h~k~sahV 540 (970)
T COG5656 465 VIPAFRSNYGFLKSRACEFISTIEEDF---KDNGILLEAYENTHNCLK-NNHLPVMIEAALALQFFIFNEQSHEKFSAHV 540 (970)
T ss_pred hhHhhcCcccchHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHHhchhhhHHHHhhh
Confidence 888888888889999999999995443 444444456677777774 467778888888888888775211 11223
Q ss_pred hchHHHHHHHhcCCcHHHHHHHHHHHH-hhccCCChHHHHHHHHh---chHHHHHHhcCCCC------cccHhHHHHHHH
Q 035507 417 RPALPALAQLIHSNDEQVLTDACWALF-GLSGDRNNDKIQAVIEA---GVCGRLVELLGHPS------PSVLTPALWTVG 486 (684)
Q Consensus 417 ~~~l~~L~~lL~~~d~~v~~~al~~L~-~L~~~~~~~~~~~~~~~---g~l~~L~~lL~~~~------~~v~~~al~~L~ 486 (684)
.+.++.++.+-+.-+-++...+...+. +.+ +.-......+... .++.....++..++ .+-+..|...|.
T Consensus 541 p~tmekLLsLSn~feiD~LS~vMe~fVe~fs-eELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~ 619 (970)
T COG5656 541 PETMEKLLSLSNTFEIDPLSMVMESFVEYFS-EELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR 619 (970)
T ss_pred hHHHHHHHHhcccccchHHHHHHHHHHHHhH-HhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 444444444444444455554444432 222 1111111111111 12223333333321 123344444444
Q ss_pred HHHc------CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCC-
Q 035507 487 NIVM------GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAE- 559 (684)
Q Consensus 487 nl~~------~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~- 559 (684)
.+.+ ..+...+. +.....|.+-=++.+. -.+.-.+|+..+-+.+-...+. . -+.-|+.+.+.+++.+..
T Consensus 620 T~~smiLSlen~p~vLk~-le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI-~-pimwgi~Ell~~~l~~~~t 695 (970)
T COG5656 620 TIESMILSLENRPLVLKY-LEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEI-E-PIMWGIFELLLNLLIDEIT 695 (970)
T ss_pred HHHHHHHhcccchHHHHH-HHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHh-h-hhhhHHHHHHHhcccccch
Confidence 4321 11212221 2234556665666666 6677778888877765432121 1 122345555555555554
Q ss_pred HhHHHHHHHHHHHhhcCCCHH
Q 035507 560 FDIKEEAAWAISNASSRGTHD 580 (684)
Q Consensus 560 ~~v~~~a~~aL~nl~~~~~~~ 580 (684)
.....+++-++.|+...|..+
T Consensus 696 ~~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 696 AVYSEEVADALDNFITYGKTE 716 (970)
T ss_pred hhhHHHHHHHHHHHHHhCccc
Confidence 366788999999998866433
No 174
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.75 E-value=0.017 Score=49.11 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=60.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhh
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVA 362 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa 362 (684)
++..|+++|..++++.....|+.=|+.++...|..+..+-+.|+-..+..++.+++++|+.+|+.++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 57889999965555888889999999999989999998888899999999999999999999999998764
No 175
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.74 E-value=0.4 Score=45.81 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcC----CCCHHHHHHHHHHHHHHhc-CCchhHHHHHhcCChHH
Q 035507 264 NLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMR----EDYPQLQFQAAWALTNIAS-GTSENTKVVIEHDAVPI 338 (684)
Q Consensus 264 ~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~----~~~~~v~~~A~~~L~~l~~-~~~~~~~~i~~~g~i~~ 338 (684)
.-...|+..+.-++|. ++.+..+.++.+--.|-.+|.. ...+-+|..++.+++.+.. ++.+....+...++||.
T Consensus 94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3344555555555554 5677778888776666666643 2346899999999999998 45556667778999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh-------cCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 339 FVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS-------EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 339 Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~-------~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
.++.+..++..-+.-|..++..|-.++....-.... ...+..++..+.+.++..+.++++.+..+|+.+.
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999998887653221111 1124445555557788899999999999999874
No 176
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.71 E-value=0.21 Score=56.16 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=114.0
Q ss_pred hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHH--hchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChh
Q 035507 417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIE--AGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494 (684)
Q Consensus 417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 494 (684)
..++|.+++.+...+..++..-+.+|+++. .+-+. +.+.. ..++|.|++.|.-++..++..+++++..+....+.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl-~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVL-TNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHH-hcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 778899999988777888888888999888 44443 22222 25788999999999999999999999988765543
Q ss_pred hHHHHHhcCChHHHHHHhccCCC--hhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHH
Q 035507 495 QTQCIINHGAVPCLLALLIHNHK--NSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN 572 (684)
Q Consensus 495 ~~~~~i~~g~l~~L~~lL~~~~~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~n 572 (684)
....=+ ..++|.+..+-.+..+ ..+|..|..++..++...|...-......++..|+..|+++...+|++|..+=.+
T Consensus 943 L~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 943 LQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred cchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 222111 2467887777666521 5789999999999998444444444455688899999999888999999877555
Q ss_pred hhc
Q 035507 573 ASS 575 (684)
Q Consensus 573 l~~ 575 (684)
...
T Consensus 1022 W~~ 1024 (1030)
T KOG1967|consen 1022 WYM 1024 (1030)
T ss_pred hhh
Confidence 443
No 177
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.53 E-value=0.33 Score=43.67 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=96.3
Q ss_pred chhHhhcCCHHHHHHHhccCCc-----hHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCC--cHHHHHHHHHH
Q 035507 369 RDLVLSEGALIPLLAQLNEHTE-----LSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSN--DEQVLTDACWA 441 (684)
Q Consensus 369 r~~i~~~g~l~~Ll~~L~~~~~-----~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~al~~ 441 (684)
...+.+.+++..|+..+.++.. .++...++.++..|-...--.........+..++..+... |..+...++..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 3556778899999999976653 4778888899988887753233333355666666666643 68999999999
Q ss_pred HHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh
Q 035507 442 LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 495 (684)
Q Consensus 442 L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 495 (684)
|-++. .+++...+.+.+.=-++.|+..|+..++.++..|+..+..+-...++.
T Consensus 84 LEs~V-l~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 84 LESIV-LNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHH-hCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 99999 777776777777667899999999999999999999888877655543
No 178
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.52 E-value=0.4 Score=49.05 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=84.9
Q ss_pred chHHHH-HHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHH
Q 035507 461 GVCGRL-VELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQ 538 (684)
Q Consensus 461 g~l~~L-~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~ 538 (684)
+++..+ ...++++++.+|..|++++|-.+--+..... ..++.+...+..+ +..++..|+.++..+.. +..+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 344443 4778899999999999999999876664433 2467788888777 89999999999999875 33333
Q ss_pred HHHHH-------HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC
Q 035507 539 IQAVI-------DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG 577 (684)
Q Consensus 539 ~~~l~-------~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~ 577 (684)
..... ...++..+.+.+.+.+++++..|+.+++.+...+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 32222 2457888899999999999999999999998755
No 179
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.47 E-value=0.023 Score=48.23 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=60.6
Q ss_pred chHHHHHHhc-CCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 461 GVCGRLVELL-GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 461 g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
.++..|+.+| .+.++.+..-||.=||.++...|..+..+-+.|+-..++.++.++ +++||.+|..++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3678899999 445777888899999999999998888777889999999999999 99999999999887653
No 180
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.46 E-value=2.1 Score=41.16 Aligned_cols=139 Identities=9% Similarity=0.130 Sum_probs=98.9
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc----CCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHH
Q 035507 478 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH----NHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLV 552 (684)
Q Consensus 478 ~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li 552 (684)
...|+..+..++++.+ .+..++++.+--.+..+|.. ...+.+|-.+..+++.+.. ++.+.+..+...+++|..+
T Consensus 96 VcnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 4456666666666554 66778887776666666643 2256789999999999987 6777888899999999999
Q ss_pred HHhccCCHhHHHHHHHHHHHhhcCCCHHHHHH-------HHH-CCChHHHH-hhccCCChHHHHHHHHHHHHHHhc
Q 035507 553 NLLQNAEFDIKEEAAWAISNASSRGTHDQIKY-------LVT-EGCIKPLC-DLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 553 ~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~-------l~~-~g~l~~L~-~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
+.+..++...+..|...+..+.... ....| +.. .-++..++ .+.+.+++.+...++.+..++.+.
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988632 22222 111 11233333 344567888888888887777654
No 181
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.44 E-value=0.81 Score=50.06 Aligned_cols=269 Identities=12% Similarity=0.086 Sum_probs=131.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
.++..++.+...+|..+|..|+..|-.++...+..+.. ++..|+++|.+++ +.....+-++|..+...++.
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~QlL~tdd-~~E~~~v~~sL~~ll~~d~k--- 129 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQLLQTDD-PVELDAVKNSLMSLLKQDPK--- 129 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHHHTT----HHHHHHHHHHHHHHHHH-HH---
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHHHHhccc-HHHHHHHHHHHHHHHhcCcH---
Confidence 36788888888999999999999998877665555554 4578999999877 66666677788777774443
Q ss_pred HHHhcCChHHHHHhcC---CCChHHHHHHHHHHHHhh-CCCCCCch--hHhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507 329 VVIEHDAVPIFVKLLA---SPSDDVREQAVWALGNVA-ADSSGCRD--LVLSEGALIPLLAQLNEHTELSMLRIATTTLS 402 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~---~~~~~v~~~a~~~L~nLa-~~~~~~r~--~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~ 402 (684)
+.+..+...+. +++..+|+.++..|..=. .-.++.-. .=.+.-++..+-..| .+-..+=......+|.
T Consensus 130 -----~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL-~DVTaeEF~l~m~lL~ 203 (556)
T PF05918_consen 130 -----GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL-QDVTAEEFELFMSLLK 203 (556)
T ss_dssp -----HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC-TT--HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence 23444454443 467889999998875432 22111100 001111222333334 3322233344555666
Q ss_pred HhccCCCCCChhhhhchHHHHHHHh------cCCcHHHHHHHHHHHH----hhccCCC--hHHHHHHHHhchHHHHHHhc
Q 035507 403 NLCRGKPRPLFDQVRPALPALAQLI------HSNDEQVLTDACWALF----GLSGDRN--NDKIQAVIEAGVCGRLVELL 470 (684)
Q Consensus 403 nL~~~~~~~~~~~~~~~l~~L~~lL------~~~d~~v~~~al~~L~----~L~~~~~--~~~~~~~~~~g~l~~L~~lL 470 (684)
.+-.............+++.+.... ...|++.....+.++. ..+ .+. ......+. ..++|.+-.+
T Consensus 204 ~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs-~~v~Sskfv~y~~-~kvlP~l~~l- 280 (556)
T PF05918_consen 204 SLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS-RGVSSSKFVNYMC-EKVLPKLSDL- 280 (556)
T ss_dssp TSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B-TTB--HHHHHHHH-HHTCCCTT---
T ss_pred hCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc-CCCChHHHHHHHH-HHhcCChhhC-
Confidence 6555322223333344555555433 2345565555544443 333 221 12222222 2344433333
Q ss_pred CCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc----C---C--ChhHHHHHHHHHHHHhcCChHHHHH
Q 035507 471 GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH----N---H--KNSIKKEVSWIISNIACGNREQIQA 541 (684)
Q Consensus 471 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~----~---~--~~~v~~~a~~~L~nl~~~~~~~~~~ 541 (684)
.+..+...+.+++.++......- ....++.+..+|.. . + +....+....++.+++...++....
T Consensus 281 ---~e~~kl~lLk~lAE~s~~~~~~d----~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~ 353 (556)
T PF05918_consen 281 ---PEDRKLDLLKLLAELSPFCGAQD----ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSLNF 353 (556)
T ss_dssp ------HHHHHHHHHHHHHTT----T----HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-THHHH-
T ss_pred ---ChHHHHHHHHHHHHHcCCCCccc----HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcchhhh
Confidence 55677888888888886554211 11234555555521 1 0 2244556677888888776665443
Q ss_pred H
Q 035507 542 V 542 (684)
Q Consensus 542 l 542 (684)
+
T Consensus 354 l 354 (556)
T PF05918_consen 354 L 354 (556)
T ss_dssp -
T ss_pred H
Confidence 3
No 182
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.42 E-value=0.84 Score=52.14 Aligned_cols=195 Identities=17% Similarity=0.124 Sum_probs=119.0
Q ss_pred HHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHH--HHHHHhcCCcH-H
Q 035507 357 ALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP--ALAQLIHSNDE-Q 433 (684)
Q Consensus 357 ~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~--~L~~lL~~~d~-~ 433 (684)
+|+++....+.....+.+.|++..+...+......++...+...+.+++...+..........+. .+..++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 56677777777778888999999999999877788899999999999998763333322222222 33333333333 6
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC-hhhHHHHHhcCChHHHHHHh
Q 035507 434 VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD-DFQTQCIINHGAVPCLLALL 512 (684)
Q Consensus 434 v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~~i~~g~l~~L~~lL 512 (684)
.-..|+..++.+. ...++.. ....+..+...+......- ........+.-+.+.+..++
T Consensus 574 rsY~~~siLa~ll-~~~~~~~-------------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLL-SDSEKTT-------------------ECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHH-hCCCcCc-------------------cccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHh
Confidence 6666777777666 3222111 1122333333333322221 11222222322333255566
Q ss_pred ccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CHhHHHHHHHHHH
Q 035507 513 IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EFDIKEEAAWAIS 571 (684)
Q Consensus 513 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~ 571 (684)
..+..+..+.-|.|++.+++...++..+.+.+.|+++.+.+.-... ..+++.++...+.
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 5554778899999999999998888888888999998888765433 3444555544443
No 183
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.42 E-value=0.5 Score=49.83 Aligned_cols=215 Identities=13% Similarity=0.192 Sum_probs=129.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHH---HhhCC---CCCCchhHhh-cCCHHHHHH
Q 035507 311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALG---NVAAD---SSGCRDLVLS-EGALIPLLA 383 (684)
Q Consensus 311 ~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~---nLa~~---~~~~r~~i~~-~g~l~~Ll~ 383 (684)
.|+..|-.+....+.....+.+.+++..+++.+..+ +-.++. +...+ .+..+..... ..+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~E-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------ 69 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYE-------VDFALEENKNEEAGSGIPPEYKESSVDGYSI------ 69 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHH-------HHHHHhcccccCCCCCCCCCccccccccccc------
Confidence 467777777777777778888899999999977542 222222 11100 0111111110 000
Q ss_pred HhccCCchHHHHHHHHHHHHhcc-CC--CCCChhhh--hchHHHHHHHhcCCc---HHHHHHHHHHHHhhccCCChHHHH
Q 035507 384 QLNEHTELSMLRIATTTLSNLCR-GK--PRPLFDQV--RPALPALAQLIHSND---EQVLTDACWALFGLSGDRNNDKIQ 455 (684)
Q Consensus 384 ~L~~~~~~~v~~~a~~~L~nL~~-~~--~~~~~~~~--~~~l~~L~~lL~~~d---~~v~~~al~~L~~L~~~~~~~~~~ 455 (684)
........+..+.++..+.. +. ........ ..++..|...+.+.. +.+...|+..+..+. ...+-...
T Consensus 70 ---~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I-~nePT~~~ 145 (379)
T PF06025_consen 70 ---SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFI-HNEPTSFS 145 (379)
T ss_pred ---CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHH-hcCCchhH
Confidence 01112344555555565555 22 11111122 344555666676553 788999999999999 88888899
Q ss_pred HHHHhchHHHHHHhcC-C---CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChh--HHH-HHHHHH
Q 035507 456 AVIEAGVCGRLVELLG-H---PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS--IKK-EVSWII 528 (684)
Q Consensus 456 ~~~~~g~l~~L~~lL~-~---~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~--v~~-~a~~~L 528 (684)
.+.++|+.+.+++.+. . ++.++....-.+++.+|- +....+.+.+.+.++.+.+++.++ +.- ++. ..+..+
T Consensus 146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~-~~~~~l~~~d~a~~l 223 (379)
T PF06025_consen 146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP-DYVKALRRRDTASNL 223 (379)
T ss_pred HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH-HHHHHhcccchHHHH
Confidence 9999999999999887 3 233444444456666665 445788888999999999999876 321 222 344444
Q ss_pred HH----HhcCChHHHHHHHH
Q 035507 529 SN----IACGNREQIQAVID 544 (684)
Q Consensus 529 ~n----l~~~~~~~~~~l~~ 544 (684)
++ +.++.|.-+..+++
T Consensus 224 G~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 224 GNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHHHHHccCHHHHHHHHH
Confidence 43 45566655555444
No 184
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=1.2 Score=47.06 Aligned_cols=269 Identities=13% Similarity=0.097 Sum_probs=141.3
Q ss_pred hcCChHHHHHhc----CCCChHHHHHHHHHHHHhhCCCCC-CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507 332 EHDAVPIFVKLL----ASPSDDVREQAVWALGNVAADSSG-CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR 406 (684)
Q Consensus 332 ~~g~i~~Li~lL----~~~~~~v~~~a~~~L~nLa~~~~~-~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~ 406 (684)
+.|.+..++..+ .+++..++..|+..|+|.+...|. +|.. ..-.+..++.-|.+..+.++.-.+..+|..+..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 345555555443 457889999999999999988543 2221 222466777777677778888888888877665
Q ss_pred CCCCCChh-hhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchH---HHHHHhcCCCCcccHhHHH
Q 035507 407 GKPRPLFD-QVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVC---GRLVELLGHPSPSVLTPAL 482 (684)
Q Consensus 407 ~~~~~~~~-~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l---~~L~~lL~~~~~~v~~~al 482 (684)
........ ..-.+.-.+..+..+.+++.+..+...++.++ .......+.+....+. ..++-.++++++. ...||
T Consensus 330 ~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~-~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~-va~AC 407 (533)
T KOG2032|consen 330 KASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALA-KLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY-VARAC 407 (533)
T ss_pred hhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHH-HHcCCCchhhhHHHHHhccccceeeeCCCChH-HHHHH
Confidence 54222211 11233334556777899999999988887776 3222221212111222 2333334555554 34566
Q ss_pred HHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCCh-hHHHH-HHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCH
Q 035507 483 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKN-SIKKE-VSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEF 560 (684)
Q Consensus 483 ~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~-~v~~~-a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~ 560 (684)
+.....+.-+- ..+... +.++.. + +. +. ..+.. .-| -..+....++....+... ...+++..-+
T Consensus 408 r~~~~~c~p~l-~rke~~--~~~q~~---l-d~-~~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t~-----~~~~f~sswe 473 (533)
T KOG2032|consen 408 RSELRTCYPNL-VRKELY--HLFQES---L-DT-DMARFQAFYNQW-CIQLNHIHPDILMLLLTE-----DQHIFSSSWE 473 (533)
T ss_pred HHHHHhcCchh-HHHHHH--HHHhhh---h-HH-hHHHHHHHHHHH-HHHHhhhCHHHHHHHHHh-----chhheecchH
Confidence 66655443221 222211 122211 1 11 11 11111 111 111222233333332221 2223333344
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507 561 DIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK 618 (684)
Q Consensus 561 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~ 618 (684)
.++..|...-.+....-.+..+.+.-..-+...+..+...+-|++...+.+++..+..
T Consensus 474 ~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 474 QVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 5555555555555443344444443333456677777788899999999999887654
No 185
>PRK14707 hypothetical protein; Provisional
Probab=95.39 E-value=11 Score=47.24 Aligned_cols=402 Identities=15% Similarity=0.078 Sum_probs=221.6
Q ss_pred cHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 250 ILPMMVAGVW--SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 250 ~l~~lv~~L~--s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
.+..+++.+. .++++.+..+. .|...+..+......+-..|+-..|-.+-+-++.+..+..+.++-..++. ++..+
T Consensus 206 ~ia~~lNa~sKWp~~~~c~~aa~-~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~-~~~l~ 283 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCGNAVS-ALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVD-DPGLR 283 (2710)
T ss_pred HHHHHHHHHhcCCCChhHHHHHH-HHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-hHHHH
Confidence 4555566555 35566555444 44444444433333333334444444444556644555555455555554 55555
Q ss_pred HHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH-Hhc
Q 035507 328 KVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS-NLC 405 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~-nL~ 405 (684)
..+-..+ +...+.-|+. ++..+...|+..|..=-.+.+..+..+ +.-.+...++-|.+-+|..+-+.+..+|. .++
T Consensus 284 ~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~ 361 (2710)
T PRK14707 284 KALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLV 361 (2710)
T ss_pred HhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence 5544333 4444444444 777888777777775555555544433 23345666777777787777776666665 455
Q ss_pred cCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHH
Q 035507 406 RGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTV 485 (684)
Q Consensus 406 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 485 (684)
............++-..|..+-.-++..+-..+..+|..=. ..+.+..+.+-..|+-..|-.+-+-++..+...+...|
T Consensus 362 ~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l-~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 362 ADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHV-VDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred cCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHh-ccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 54322222233444444555555667666666666665444 36667777666667766666666778888888888877
Q ss_pred HHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHH-H
Q 035507 486 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIK-E 564 (684)
Q Consensus 486 ~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~-~ 564 (684)
.--..++.+..+.+-..+ +...+..++.-++..+-.+|+..|..=....++..+.+--.++...|-.+-+-++.... .
T Consensus 441 A~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~ 519 (2710)
T PRK14707 441 AGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAE 519 (2710)
T ss_pred HHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHH
Confidence 776666654444332223 44444445444366677777777665545555555544434444444444444554433 3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhc
Q 035507 565 EAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAE 644 (684)
Q Consensus 565 ~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g 644 (684)
.+.|....+.. .....+.|-..++...+-.+-++++......+...|...+..... ....+...+
T Consensus 520 A~~~lA~rl~~--~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~-------------~~~~L~aq~ 584 (2710)
T PRK14707 520 AASALAERVVD--ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQ-------------LPKDLHRQG 584 (2710)
T ss_pred HHHHHHHHhcc--chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchh-------------hHHhhhhhH
Confidence 34455555543 222222223333444444455667766666666666665443221 334555555
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507 645 GLEKIENLQSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 645 ~~~~L~~L~~~~~~~i~~~a~~ii~~~f 672 (684)
+--.+..|-..++..-+..|..-|....
T Consensus 585 Vs~llNaLSKWP~~~aC~~Aa~~LA~~l 612 (2710)
T PRK14707 585 VVIVLNALSKWPDTAVCAEAVNALAERL 612 (2710)
T ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHh
Confidence 5566777778887777777666665554
No 186
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.39 E-value=2 Score=45.14 Aligned_cols=233 Identities=14% Similarity=0.120 Sum_probs=134.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC---CcHHHHHHcCCHHHHHHhhcCCC----C--HHHHHHHHHHHHHHhc
Q 035507 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIES---MPIEEVIESGVVPRFVEFLMRED----Y--PQLQFQAAWALTNIAS 321 (684)
Q Consensus 251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~---~~~~~ii~~g~i~~Lv~lL~~~~----~--~~v~~~A~~~L~~l~~ 321 (684)
...+..++...+.+.|++|+-...++....+ .+.+.+.++-+.+.+-+++.+.+ . .-.+..++.+|+-.|.
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 3456677777777889999999999888766 55667888888888888886532 1 2345556677777776
Q ss_pred CCchhH--HHHHhcCChHHHHHhcCC-CCh------HHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchH
Q 035507 322 GTSENT--KVVIEHDAVPIFVKLLAS-PSD------DVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELS 392 (684)
Q Consensus 322 ~~~~~~--~~i~~~g~i~~Li~lL~~-~~~------~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~ 392 (684)
.++.. ..++ +.||.|..++.. .++ .+.+.+..+|..+++..+. ...++..|+++.+.+.-.-..-..
T Consensus 93 -~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~ 168 (698)
T KOG2611|consen 93 -VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSH 168 (698)
T ss_pred -ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCch
Confidence 44432 2233 568999998875 233 3788899999999998766 456677888888876542221111
Q ss_pred HHHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHH-----H----HHHHHhc
Q 035507 393 MLRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDK-----I----QAVIEAG 461 (684)
Q Consensus 393 v~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~-----~----~~~~~~g 461 (684)
-..-++-.+.-+...- -.......-..+..+..=+...+.......|..|..+.+....+. . ......|
T Consensus 169 d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G 248 (698)
T KOG2611|consen 169 DMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG 248 (698)
T ss_pred hHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH
Confidence 1111222221111111 111111112223344444445667778888888875441111111 1 1223334
Q ss_pred hHHHHHHhcCCCCcccHhHHHHHHHHHHc
Q 035507 462 VCGRLVELLGHPSPSVLTPALWTVGNIVM 490 (684)
Q Consensus 462 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 490 (684)
+...|-.-+ .+.-|.+|+....++.+
T Consensus 249 ~~~IL~~kv---~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 249 VVAILQNKV---APSQRLPALILAANMMH 274 (698)
T ss_pred HHHHHhccc---CchhcChHHHHHHHHHH
Confidence 443333333 34456677777777654
No 187
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.32 E-value=1.1 Score=46.84 Aligned_cols=172 Identities=12% Similarity=0.136 Sum_probs=104.7
Q ss_pred HHHHHHHHHH-HHhccCCCCCChhhhhchHHHHHHHhcC-CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHh
Q 035507 392 SMLRIATTTL-SNLCRGKPRPLFDQVRPALPALAQLIHS-NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVEL 469 (684)
Q Consensus 392 ~v~~~a~~~L-~nL~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~l 469 (684)
+-+..|..-| .-+|.+.-.........++-.+++.+.+ .++.++.-|++.|..++ .+.+.....-.+ -++..+++.
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml-~~Q~~~l~DstE-~ai~K~Lea 379 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREML-TNQPARLFDSTE-IAICKVLEA 379 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH-HhchHhhhchHH-HHHHHHHHH
Confidence 3344444433 3334333222233345667777788876 78889999999999999 554433221121 234455555
Q ss_pred cCCCCcccHhHHHH-HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCC
Q 035507 470 LGHPSPSVLTPALW-TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGL 547 (684)
Q Consensus 470 L~~~~~~v~~~al~-~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~ 547 (684)
-.+..+.+...|.. ++.-+++..+.+. +..+..++... +...-..+...+..++.. ..+....++ ..+
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~di 449 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL-PDI 449 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh-hhh
Confidence 55555555555554 4445555555332 23344444445 555555666677777663 334444344 358
Q ss_pred HHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 548 IGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 548 l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
.|.+++...+.+..+|+.|+++|..+..
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 9999999999999999999999998875
No 188
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.19 E-value=0.17 Score=58.53 Aligned_cols=144 Identities=13% Similarity=0.184 Sum_probs=113.4
Q ss_pred hHHHHHHhcCC----CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChH
Q 035507 462 VCGRLVELLGH----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE 537 (684)
Q Consensus 462 ~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 537 (684)
+.|.+++..+. .+|.++.+|.-+++.+..-+..... .-+|.|+.++...+++.+|..+..+++.++...|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 45566666633 5688999999999999887765554 35789999998444999999999999999876555
Q ss_pred HHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHH
Q 035507 538 QIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENIL 617 (684)
Q Consensus 538 ~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il 617 (684)
.+.. .-+.|++.+.+.++.+|+.|.-+++++...+ + +.-.|.+..+.-++.++++++...|-..+..+-
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd---m---iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND---M---IKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh---h---hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 4432 4567899999999999999999999998732 2 335789999999999999999988887666666
Q ss_pred hccc
Q 035507 618 KVGE 621 (684)
Q Consensus 618 ~~~~ 621 (684)
..++
T Consensus 1064 ~k~n 1067 (1251)
T KOG0414|consen 1064 SKGN 1067 (1251)
T ss_pred hccc
Confidence 5543
No 189
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.18 E-value=7.8 Score=44.81 Aligned_cols=242 Identities=18% Similarity=0.207 Sum_probs=140.5
Q ss_pred HHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcC----CCC----hHHHHHHH
Q 035507 288 IESGVVPRFVEFLMRED----YPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA----SPS----DDVREQAV 355 (684)
Q Consensus 288 i~~g~i~~Lv~lL~~~~----~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~----~~~----~~v~~~a~ 355 (684)
.+.|++..++.++.+-. ....-...+..|..++. .+.+|+.+++.|+++.|+..+. .+. ..+.+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 34678888888886632 13455556667777776 7999999999999999999774 333 67888888
Q ss_pred HHHHHhhCCCCC--Cc---hhHhh-------cCCHHHHHHHhccC---CchHHHHHHHHHHHHhccCCCCCChhhhhchH
Q 035507 356 WALGNVAADSSG--CR---DLVLS-------EGALIPLLAQLNEH---TELSMLRIATTTLSNLCRGKPRPLFDQVRPAL 420 (684)
Q Consensus 356 ~~L~nLa~~~~~--~r---~~i~~-------~g~l~~Ll~~L~~~---~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l 420 (684)
.++..+..+... .. ..... ...+..+++.+.+. .++.+....+..|-+|+.+.+......+...-
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~ 272 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFK 272 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Confidence 777777643321 00 00001 11266667766533 36788899999999999986433322222222
Q ss_pred HHHHHHhc-----CCcHHHHHHH-HHHHHhhccCCC--hHHHHHHHHhchHHHHHHhcCCCCc----------------c
Q 035507 421 PALAQLIH-----SNDEQVLTDA-CWALFGLSGDRN--NDKIQAVIEAGVCGRLVELLGHPSP----------------S 476 (684)
Q Consensus 421 ~~L~~lL~-----~~d~~v~~~a-l~~L~~L~~~~~--~~~~~~~~~~g~l~~L~~lL~~~~~----------------~ 476 (684)
|.+ ++=. .++..+..+. +.+...+- ... ....+.+++.|++...+..|...-| .
T Consensus 273 p~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~-~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 273 PYL-DFDKFDEEHSPDEQFKLECFCEIAEGIP-NNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred Hhc-ChhhcccccCchHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 222 1111 1122233222 22222332 222 3557788999999988887744221 2
Q ss_pred cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
....+++.|.-++.++. .++..+..++++.+..+=+-+.+..+-.-|=..|-.++.
T Consensus 351 sLp~iL~lL~GLa~gh~-~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHE-PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred cHHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 33457888888888876 455557777775555443333133444444444444433
No 190
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=5.4 Score=42.34 Aligned_cols=249 Identities=13% Similarity=0.116 Sum_probs=129.9
Q ss_pred hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh--h
Q 035507 417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD--F 494 (684)
Q Consensus 417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~--~ 494 (684)
...+..+..-..+++..++..|++.|++.+ .+.++........-+...+..+....+.+|.-.|+.+|..+..... +
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~a-s~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~ 335 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTA-SGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD 335 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHh-ccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc
Confidence 344444444455778899999999999999 7755554434333233344455566678888899888887764221 1
Q ss_pred hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc--CC--hHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHH
Q 035507 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC--GN--REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAI 570 (684)
Q Consensus 495 ~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~--~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL 570 (684)
....++ .+.-.+..+..+. ++++|..|...++.++. +. .+.....+..+..|.++. +.+.++.+-. ||.+.
T Consensus 336 l~~~~l--~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l~d~~p~va~-ACr~~ 410 (533)
T KOG2032|consen 336 LESYLL--NIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-LQDPNPYVAR-ACRSE 410 (533)
T ss_pred hhhhch--hHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-eCCCChHHHH-HHHHH
Confidence 111121 2444666777777 89999999888887764 21 121122233344444444 4556665543 44444
Q ss_pred HHhhcCCC--HHHHHHHH---H------CCChHHHHhhccCCChHHHHHHHHHHHHHHhccccccc-------CCCCCcc
Q 035507 571 SNASSRGT--HDQIKYLV---T------EGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKN-------TDSDIGD 632 (684)
Q Consensus 571 ~nl~~~~~--~~~~~~l~---~------~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~-------~~~~~~~ 632 (684)
...+.-+- .+...++- + .......+--+++..+++....+.....++...-.... ....-+-
T Consensus 411 ~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l 490 (533)
T KOG2032|consen 411 LRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSL 490 (533)
T ss_pred HHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHh
Confidence 44433110 01000000 0 01122222224444444444444433333332210000 0000001
Q ss_pred hhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507 633 INQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY 671 (684)
Q Consensus 633 ~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~ 671 (684)
...++.....+.....+..|-..+-+++.+.|.+.++..
T Consensus 491 ~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l 529 (533)
T KOG2032|consen 491 VRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLL 529 (533)
T ss_pred HHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhH
Confidence 223455555555667788888888999999998887653
No 191
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.13 E-value=0.72 Score=50.78 Aligned_cols=194 Identities=11% Similarity=0.082 Sum_probs=137.8
Q ss_pred hhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChh
Q 035507 415 QVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494 (684)
Q Consensus 415 ~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 494 (684)
...+++|.+++++...|..++...+.-+-... + ...+.+++..++|.+..-+.+.++.+|+.++.++..++..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i-~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI-D---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh-h---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 55789999999999999999988877776555 2 3334567778999999999999999999999999888753321
Q ss_pred hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS 574 (684)
Q Consensus 495 ~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~ 574 (684)
..+....+..+..+-.+. +..+|-...-+++.|+....... .+.-....+.+.+.+.-..-|..+.+++....
T Consensus 403 ---~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 403 ---RNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred ---hhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 123333444444444434 77899888888888876532221 22223445556677776777888888887665
Q ss_pred cCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507 575 SRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 575 ~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~ 623 (684)
....... +...+++.++-+.-+++..++..+..++...+...++.
T Consensus 476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 4322111 24557888888888899999999999999888776554
No 192
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.10 E-value=3.9 Score=47.14 Aligned_cols=240 Identities=16% Similarity=0.155 Sum_probs=147.7
Q ss_pred hchHHHHHHHhcC-----CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC----CCC----cccHhHHHH
Q 035507 417 RPALPALAQLIHS-----NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG----HPS----PSVLTPALW 483 (684)
Q Consensus 417 ~~~l~~L~~lL~~-----~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~----~~~----~~v~~~al~ 483 (684)
.+++..++.++.+ .+.+....++..|.+.+ .-..+++.+++.|+++.|+..+. .+. ..+.+..+.
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~--Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC--KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH--hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 3667777777653 34566777788888877 55788899999999999888773 433 566777777
Q ss_pred HHHHHHcCChhhHH----HHHhc--------CChHHHHHHhccCC---ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCH
Q 035507 484 TVGNIVMGDDFQTQ----CIINH--------GAVPCLLALLIHNH---KNSIKKEVSWIISNIACGNREQIQAVIDAGLI 548 (684)
Q Consensus 484 ~L~nl~~~~~~~~~----~~i~~--------g~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l 548 (684)
++..+......... ..... .-+..+++.+.++. ++.+....+.+|.+++.|..+..+.+++. +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 77666543321110 00111 12666666665542 57888999999999999999988888764 3
Q ss_pred HHHHHHhccC---CHhHHHHHHHHHHHhhcCC-----CHHHHHHHHHCCChHHHHhhccCCCh--------H--------
Q 035507 549 GPLVNLLQNA---EFDIKEEAAWAISNASSRG-----THDQIKYLVTEGCIKPLCDLLQCADP--------K-------- 604 (684)
Q Consensus 549 ~~Li~ll~~~---~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~g~l~~L~~lL~~~~~--------~-------- 604 (684)
.+.+++=... ..+- ...+.+++.++.+- ......++++.|++...++++...-| +
T Consensus 272 ~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 3333322111 1111 22355555555432 23456778899999988888853222 1
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHh-hcCCCHHHHHHHHHHHHHhcCCC
Q 035507 605 IVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENL-QSHDNNEIHEKSVKILETYWCGR 675 (684)
Q Consensus 605 v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L-~~~~~~~i~~~a~~ii~~~f~~e 675 (684)
-...++..|.-+...... .+.+...+++..+-.| +-+....|=..|.++|+..=+.+
T Consensus 351 sLp~iL~lL~GLa~gh~~--------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEP--------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred cHHHHHHHHHHHHhcCHH--------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 234455555555543221 2233445667777777 44456788899999998775443
No 193
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.07 E-value=0.86 Score=47.73 Aligned_cols=147 Identities=12% Similarity=0.157 Sum_probs=98.7
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHH
Q 035507 378 LIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAV 457 (684)
Q Consensus 378 l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~ 457 (684)
+..++..|.++.+...+.-|+..|..+|...+.+-+....-++..+++.-.+.++++...|..+...+.....+..
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---- 406 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---- 406 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh----
Confidence 4566777766678888999999999999998777777777777777777666666666555544333220222211
Q ss_pred HHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 458 IEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 458 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
-+..+..++...+...-..++.++..+...-+..--..+-..+.|.+++-..+. +..||+.|.++|..+..
T Consensus 407 ----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 ----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 133444555556666666677778877765442211122246889999999888 99999999999988754
No 194
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.00 E-value=0.17 Score=39.10 Aligned_cols=66 Identities=21% Similarity=0.340 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCC
Q 035507 521 KKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EFDIKEEAAWAISNASSRGTHDQIKYLVTEG 589 (684)
Q Consensus 521 ~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g 589 (684)
.|.|.|++++++.. +..++.+.+.++++.++++.... ...+|-.|.++|+-++. +.+..+.|.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 57899999999874 46677777789999999998754 78899999999999987 677777766655
No 195
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=7.8 Score=43.25 Aligned_cols=300 Identities=14% Similarity=0.075 Sum_probs=170.3
Q ss_pred HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC--------CChHHHHHHHHHHHHhhC--CCCCCchhHhhcCCHHH
Q 035507 311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS--------PSDDVREQAVWALGNVAA--DSSGCRDLVLSEGALIP 380 (684)
Q Consensus 311 ~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--------~~~~v~~~a~~~L~nLa~--~~~~~r~~i~~~g~l~~ 380 (684)
+|+.++..+.+...+.+ + .|+++.+.+.|.. .++.-.+.|++.++++.. +.+....-+.+.-+++.
T Consensus 389 aal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 389 AALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred HHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 35556655555333322 2 3889999998832 234556778888888764 22222233333334455
Q ss_pred HHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh
Q 035507 381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA 460 (684)
Q Consensus 381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~ 460 (684)
++..+ ++..--++..+|..++.+... -+.......+.......+.+++-.++..|.-|+..+. .+. +......+
T Consensus 465 v~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi-~~~--q~h~k~sa 538 (970)
T COG5656 465 VIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFI-FNE--QSHEKFSA 538 (970)
T ss_pred hhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH-hch--hhhHHHHh
Confidence 55555 566667788899999998433 3344455677777888888888899999999998887 332 33334444
Q ss_pred ch---HHHHHHhcCCCCcccHhHHHHH-HHHHHcCChhhHHHHHh---cCChHHHHHHhccCC-----ChhHHHHHHHHH
Q 035507 461 GV---CGRLVELLGHPSPSVLTPALWT-VGNIVMGDDFQTQCIIN---HGAVPCLLALLIHNH-----KNSIKKEVSWII 528 (684)
Q Consensus 461 g~---l~~L~~lL~~~~~~v~~~al~~-L~nl~~~~~~~~~~~i~---~g~l~~L~~lL~~~~-----~~~v~~~a~~~L 528 (684)
.+ ++.|+.+-+.-+.++....+.. ++..+..-......+.. ...+.....++..++ ..+-+..|...|
T Consensus 539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL 618 (970)
T COG5656 539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGIL 618 (970)
T ss_pred hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHH
Confidence 34 4444444343333444333332 22222211111111111 122333333333221 113344555555
Q ss_pred HHHhc------CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC
Q 035507 529 SNIAC------GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD 602 (684)
Q Consensus 529 ~nl~~------~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~ 602 (684)
..+.. ..+.....+ +....|..--++.+.-.+.-.+|+..+-+.+-. ..+... +--|+.+.+.+++.+..
T Consensus 619 ~T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~p--imwgi~Ell~~~l~~~~ 694 (970)
T COG5656 619 RTIESMILSLENRPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYTFM-SKEIEP--IMWGIFELLLNLLIDEI 694 (970)
T ss_pred HHHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhhh--hhhHHHHHHHhcccccc
Confidence 55432 344444433 334667777777888888888999888777642 112111 23356777778887776
Q ss_pred h-HHHHHHHHHHHHHHhcccccc
Q 035507 603 P-KIVTVCLEGLENILKVGEAEK 624 (684)
Q Consensus 603 ~-~v~~~al~~L~~il~~~~~~~ 624 (684)
+ .-...+..++.+++.+|.+.-
T Consensus 695 t~~y~ee~~~al~nfityG~~ef 717 (970)
T COG5656 695 TAVYSEEVADALDNFITYGKTEF 717 (970)
T ss_pred hhhhHHHHHHHHHHHHHhCcccc
Confidence 4 667888889999999986654
No 196
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.92 E-value=2.1 Score=43.85 Aligned_cols=172 Identities=12% Similarity=0.029 Sum_probs=111.9
Q ss_pred hchHHHHH-HHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh-h
Q 035507 417 RPALPALA-QLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD-F 494 (684)
Q Consensus 417 ~~~l~~L~-~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~ 494 (684)
.+++..++ ..+.+.++.++..++.+++-.+ --+.+... ..++.+...+..+++.++..|+.++..+..... .
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~-Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCC-LLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 35565544 7888999999999999999888 43332222 346777777877788999999999999874332 1
Q ss_pred hHHHH-------HhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc----cCCHhHH
Q 035507 495 QTQCI-------INHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ----NAEFDIK 563 (684)
Q Consensus 495 ~~~~~-------i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~----~~~~~v~ 563 (684)
..... -...++..+.+.+.+. +++++..|+..++.+.-.+.-.- ...++..|+-..- ..+..++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHH
Confidence 11111 1235778888899888 99999999999999864221111 0223344443332 2356777
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 035507 564 EEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA 601 (684)
Q Consensus 564 ~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~ 601 (684)
..-...+-..+.. ++++. ..+....++.+..+.+..
T Consensus 174 Q~L~~Ffp~y~~s-~~~~Q-~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 174 QCLSVFFPVYASS-SPENQ-ERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHcC-CHHHH-HHHHHHHHHHHHHHHhCc
Confidence 7777777777764 34443 344555677777766543
No 197
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.75 E-value=0.042 Score=34.61 Aligned_cols=28 Identities=43% Similarity=0.748 Sum_probs=25.3
Q ss_pred hHHHHHhcCCCChHHHHHHHHHHHHhhC
Q 035507 336 VPIFVKLLASPSDDVREQAVWALGNVAA 363 (684)
Q Consensus 336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~ 363 (684)
+|.+++++++++++||..|+++|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999975
No 198
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.62 E-value=0.13 Score=48.62 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=81.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcC--------CCCHHHHHHHHHHHHHHh
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMR--------EDYPQLQFQAAWALTNIA 320 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~--------~~~~~v~~~A~~~L~~l~ 320 (684)
....+++.+.+..... ..+..|+..+...+ .-++.+++.|++..|+++|.. ..+..++.+++.||..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4567888887765443 45566666666554 457788899999999998853 123578999999999999
Q ss_pred cCCchhHHHHHh-cCChHHHHHhcCCCChHHHHHHHHHHHHhh
Q 035507 321 SGTSENTKVVIE-HDAVPIFVKLLASPSDDVREQAVWALGNVA 362 (684)
Q Consensus 321 ~~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa 362 (684)
. +......++. .+++..++..|.+++..++..|+.+|+.+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8 5566666664 688999999999999999999999999886
No 199
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.55 E-value=1.2 Score=51.09 Aligned_cols=185 Identities=15% Similarity=0.107 Sum_probs=128.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507 252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI 331 (684)
Q Consensus 252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~ 331 (684)
+.+-..+.+.++..+.+|+..+...++... ....-...|.+-.++.....+.+-.+...|+.+|..|+......... .
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-Y 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-H
Confidence 455566778999999999999999887654 11111223455555555544444788999999999999854433222 2
Q ss_pred hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC--C
Q 035507 332 EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK--P 409 (684)
Q Consensus 332 ~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~--~ 409 (684)
..+..|.++.-+......+++.+..++-.++...+. ....+.++..+ .+.++.++..+...+....+.. .
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCCc
Confidence 236788888888888888888888777777653221 12345566666 7788888877666665555443 2
Q ss_pred CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 410 RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 410 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
.........++|.++....+.+.+|+..+..+++-+.
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2344556889999999999999999999999988666
No 200
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.55 E-value=0.049 Score=34.31 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=25.5
Q ss_pred ChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 504 AVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 504 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
++|.+.+++.++ +++||..|+++|+.++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 378999999999 99999999999999975
No 201
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.33 E-value=7.1 Score=40.53 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=114.5
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHh-CC-HHHHHHHhccC-----C--------HhHHHHHHH
Q 035507 505 VPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDA-GL-IGPLVNLLQNA-----E--------FDIKEEAAW 568 (684)
Q Consensus 505 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-g~-l~~Li~ll~~~-----~--------~~v~~~a~~ 568 (684)
+..+...|.+. ...+...+...|..++. ........+... ++ .+.+-+++... + +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 77888888888 77888889999999988 665666666642 11 34455554221 1 289999998
Q ss_pred HHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHH
Q 035507 569 AISNASSRGTHDQIKYLV-TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLE 647 (684)
Q Consensus 569 aL~nl~~~~~~~~~~~l~-~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 647 (684)
.+..+...+++.....+. +.+.+..+...+..++++++..+++++..-.-.+...... .-+..+. ...+.
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~--------~K~~~fn-~~~L~ 207 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS--------TKCKLFN-EWTLS 207 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh--------hhhhhcC-HHHHH
Confidence 888888878887776665 5667899999999999999999999999654444433211 1233333 33677
Q ss_pred HHHHhhcCCCH----HHHHHHHHHHHHhcCC
Q 035507 648 KIENLQSHDNN----EIHEKSVKILETYWCG 674 (684)
Q Consensus 648 ~L~~L~~~~~~----~i~~~a~~ii~~~f~~ 674 (684)
+|..|-...++ .+.+.|.+.+..+..+
T Consensus 208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 208 QLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 88888777777 8999999999987654
No 202
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.30 E-value=0.96 Score=44.13 Aligned_cols=175 Identities=14% Similarity=0.174 Sum_probs=113.6
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhc-CCchhHHHHHhcCChHHHHHh
Q 035507 268 EATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED----YPQLQFQAAWALTNIAS-GTSENTKVVIEHDAVPIFVKL 342 (684)
Q Consensus 268 ~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~----~~~v~~~A~~~L~~l~~-~~~~~~~~i~~~g~i~~Li~l 342 (684)
.|+..|..+++ +++.+..++++.+.-.|..+|+..+ .+.+|..++.+++.+.. ++++....+.+.+++|.-+..
T Consensus 69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 44555555555 5678888999998777777776543 35788999999999998 566777888899999999999
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCCCC------chhH-hhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhh
Q 035507 343 LASPSDDVREQAVWALGNVAADSSGC------RDLV-LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQ 415 (684)
Q Consensus 343 L~~~~~~v~~~a~~~L~nLa~~~~~~------r~~i-~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~ 415 (684)
+..++.-.+.-|..++..|-.++.+. .+.+ .-..++..++..+...+++.+.++.+.+...|+.+. .....
T Consensus 148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp--rar~a 225 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP--RAREA 225 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST--THHHH
T ss_pred HHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH--HHHHH
Confidence 99998888888999988887655321 1111 112345566666667889999999999999999884 22222
Q ss_pred hhchHHHHHH-----HhcCCcHHHHHHHHHHHHhh
Q 035507 416 VRPALPALAQ-----LIHSNDEQVLTDACWALFGL 445 (684)
Q Consensus 416 ~~~~l~~L~~-----lL~~~d~~v~~~al~~L~~L 445 (684)
....+|..+. -+-.+|+.++.+--..+.++
T Consensus 226 L~~~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 226 LRQCLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHHS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHhCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2334443111 11134666666666666554
No 203
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.10 E-value=0.39 Score=43.92 Aligned_cols=147 Identities=10% Similarity=0.055 Sum_probs=91.7
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507 291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370 (684)
Q Consensus 291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~ 370 (684)
.+++.|.++|+.+....+|.+|+++|+.|..-+|...+.+.... +.-. -...+.......... .+. .+ ..+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~~-~~~---~~-~~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLPM-MGI---SP-SSE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHhh-ccC---CC-chH
Confidence 36778889998876689999999999999997776555332211 1000 001111111111111 111 11 112
Q ss_pred hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
...-..++..|+..|.+.+-..-...++.++.++..............++|.++..++..++..++..++-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2333345778888886555555555777888877765555557778999999999999777788888877777665
No 204
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.05 E-value=1.6 Score=46.13 Aligned_cols=119 Identities=12% Similarity=0.171 Sum_probs=88.7
Q ss_pred HHHHHHHHHHc---CChhhHHHHHh-cCChHHHHHHhccCC--ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHH
Q 035507 480 PALWTVGNIVM---GDDFQTQCIIN-HGAVPCLLALLIHNH--KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVN 553 (684)
Q Consensus 480 ~al~~L~nl~~---~~~~~~~~~i~-~g~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ 553 (684)
..++++..+.. +.....+.+++ ..++..|..++.+.. .+.+-..|+.+++.+....|.....+.++|+++.+++
T Consensus 79 ~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~ 158 (379)
T PF06025_consen 79 SLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLD 158 (379)
T ss_pred HHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHH
Confidence 34455555555 33445566777 566778888887763 4578888999999999888899999999999999999
Q ss_pred Hhc-cC---CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC
Q 035507 554 LLQ-NA---EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC 600 (684)
Q Consensus 554 ll~-~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~ 600 (684)
.+. .+ +.++-...-.+++.++- +....+.+.+.+.++.+.+.+.+
T Consensus 159 ~i~~~~i~~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 159 AITAKGILPSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHhccCCCCcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCC
Confidence 998 43 55666666677777776 66777888888888888887753
No 205
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.05 E-value=0.62 Score=42.48 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=92.5
Q ss_pred CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHH-hcCChHH
Q 035507 429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPC 507 (684)
Q Consensus 429 ~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i-~~g~l~~ 507 (684)
...++++..+.-++..+- +. ...-...-+-..+-.++.....+-...++.++..+-.+.++....++ ..|+++.
T Consensus 16 ~~~~~~r~~a~v~l~k~l-~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~ 90 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-DA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLES 90 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHH
T ss_pred CCCHhHHHHHHHHHHHHH-HH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHH
Confidence 456778888888887765 22 22222223344555666666666788899999999888887666555 6789999
Q ss_pred HHHHhc--cCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CHh-HHHHHHHHHHH
Q 035507 508 LLALLI--HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EFD-IKEEAAWAISN 572 (684)
Q Consensus 508 L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~~-v~~~a~~aL~n 572 (684)
+..++. .. +..++..++.+++.-|. + +.....+...+++.|-+.++.. +.. +|..|+-+|+.
T Consensus 91 l~~~~~~~~~-~~~~~~~~lell~aAc~-d-~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 91 LLPLASRKSK-DRKVQKAALELLSAACI-D-KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHH-CTS--HHHHHHHHHHHHHHTT-S-HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHhcccC-CHHHHHHHHHHHHHHHc-c-HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 999998 55 77788877777766554 3 3444445556899999999644 555 78888877764
No 206
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.00 E-value=0.77 Score=45.05 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcC
Q 035507 265 LQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA 344 (684)
Q Consensus 265 ~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~ 344 (684)
....|+..|.-++--+++.+..+.+...+..++.+|.....+.++..++.+|..+.-+++.+.+.+-+.+++..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34557788888887787778888888999999999966555899999999999999999999999999999999999998
Q ss_pred C--CChHHHHHHHHHHHHhhCCC
Q 035507 345 S--PSDDVREQAVWALGNVAADS 365 (684)
Q Consensus 345 ~--~~~~v~~~a~~~L~nLa~~~ 365 (684)
+ .+.+++-.++..|.-.....
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred cccccHHHhHHHHHHHHHHHccc
Confidence 7 56788888888887665443
No 207
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.00 E-value=5.3 Score=44.27 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=77.1
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc
Q 035507 290 SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369 (684)
Q Consensus 290 ~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r 369 (684)
+|.+..+++...+.+ ..+|...+..|..+.. ....+...+-.+....+..=+.+..+.||.+|+.+|+.+-++...
T Consensus 84 ~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-- 159 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKD-KKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-- 159 (892)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC--
Confidence 455666666666666 7999999999999887 333344444456667777767777899999999999999754422
Q ss_pred hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507 370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLS 402 (684)
Q Consensus 370 ~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~ 402 (684)
-+..++..+...+.++++.++++.++..+.
T Consensus 160 ---ee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 160 ---EECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ---CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 123457788888889999999998765443
No 208
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.90 E-value=4.5 Score=43.77 Aligned_cols=109 Identities=18% Similarity=0.108 Sum_probs=80.2
Q ss_pred hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507 413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD 492 (684)
Q Consensus 413 ~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 492 (684)
...+.+.+..+++.+.++|..++..+|..|+.+. +. -.-++..+-.|.+..|.+-+-+..+.+|..|+.+|+.+-...
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~-d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLS-DV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHH-Hh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 4556777777888888999999999999999998 43 334455666688888988888899999999999999886433
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507 493 DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII 528 (684)
Q Consensus 493 ~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L 528 (684)
...-. .+...|..+++..++.+||+.|..-+
T Consensus 164 ~neen-----~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 164 LNEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred CChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 21111 12346667776665888998765433
No 209
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.68 E-value=1.3 Score=48.45 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=104.9
Q ss_pred hchHHHHHHHhcC----CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC-CCCcccHhHHHHHHHHHHcC
Q 035507 417 RPALPALAQLIHS----NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG-HPSPSVLTPALWTVGNIVMG 491 (684)
Q Consensus 417 ~~~l~~L~~lL~~----~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~ 491 (684)
...-|.+.....+ .|++++..|.-+|..+- .-+.+... .-+|.++..+. +++|.+|..|+-.+|.++..
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klM-ClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vc 964 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLM-CLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVC 964 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHH-HHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeecccccee
Confidence 3444555555543 78999999988887665 33332222 35788888886 89999999999999998754
Q ss_pred ChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHH
Q 035507 492 DDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAIS 571 (684)
Q Consensus 492 ~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~ 571 (684)
-....+. .-..|..-|.+. +..||+.|..++.++.-.+. +--.|-++.+..+|.++|.++...|-..+.
T Consensus 965 fN~~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft 1033 (1128)
T COG5098 965 FNTTADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFT 1033 (1128)
T ss_pred hhhhhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHH
Confidence 4333322 234666777777 89999999999999864321 122477899999999999999999999999
Q ss_pred HhhcCC
Q 035507 572 NASSRG 577 (684)
Q Consensus 572 nl~~~~ 577 (684)
.++...
T Consensus 1034 ~~a~Kd 1039 (1128)
T COG5098 1034 QIAKKD 1039 (1128)
T ss_pred HHHhcc
Confidence 998743
No 210
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.60 E-value=1.8 Score=47.86 Aligned_cols=257 Identities=14% Similarity=0.146 Sum_probs=164.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507 252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI 331 (684)
Q Consensus 252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~ 331 (684)
-.++..+.-.+.+.+..-...|.+.+.. --+.++...++|.|+..+...+...-....+-.++..... .+ .
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~~l~~---~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e-----y 327 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLIDRLDN---FPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE-----Y 327 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----c
Confidence 4555566667777777666666664433 2355677778888888876654111122222223333331 11 5
Q ss_pred hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC
Q 035507 332 EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP 411 (684)
Q Consensus 332 ~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~ 411 (684)
..+++|.+++++.+++..+|-.-+.-+-+....- .+.+.+..+++.+..-+ .+++..++..++.++..++..-...
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh
Confidence 5688999999999999999876666666555443 34556666777777777 7788889998888888777553221
Q ss_pred ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHH-HHHHhcCCCCcccHhHHHHHHHHHHc
Q 035507 412 LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCG-RLVELLGHPSPSVLTPALWTVGNIVM 490 (684)
Q Consensus 412 ~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~-~L~~lL~~~~~~v~~~al~~L~nl~~ 490 (684)
..-...+..+..+-.+++..++.+..-+++.++ ... +.....+++. .+..-+.++-...|..+...+.....
T Consensus 404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~-~~l----~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIA-PHL----AASVRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred --hhcHHHHHHHHhhCccccCcccccceeeecccc-ccc----chhhhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 122344555555555677889999999998888 332 1122334333 34445777777888888888766554
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 035507 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA 532 (684)
Q Consensus 491 ~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 532 (684)
..+ +.-+...++|.+..+.-++ +..+|..|..++...-
T Consensus 477 ~~~---~~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 477 YFD---QSEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFL 514 (690)
T ss_pred ccc---hhhhhhhccccccccccCc-ccchhhHHHHHHHHHH
Confidence 333 2223456899999888888 8888888887776553
No 211
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=93.52 E-value=9 Score=38.36 Aligned_cols=201 Identities=12% Similarity=0.095 Sum_probs=136.1
Q ss_pred hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC-CCC--hhhh---hchHHHHHHHhcCCc-HHHHHHHHHHHH
Q 035507 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP-RPL--FDQV---RPALPALAQLIHSND-EQVLTDACWALF 443 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~-~~~--~~~~---~~~l~~L~~lL~~~d-~~v~~~al~~L~ 443 (684)
.+.++|.+..++..+ ...+-+.++.++...+++-+..- ... .... ..++..++.- ..+ +++...+-..+.
T Consensus 74 ef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLR 150 (342)
T ss_pred HHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHH
Confidence 345667788888888 66677788888888888887762 111 1111 3333333333 122 344333333333
Q ss_pred hhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCC----hHHHHHHhccCCChh
Q 035507 444 GLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGA----VPCLLALLIHNHKNS 519 (684)
Q Consensus 444 ~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~----l~~L~~lL~~~~~~~ 519 (684)
... ..+...+.+..+.-+......++.+.-++...|..+...+.+........++..+. .+..-.++.+. +.-
T Consensus 151 Eci--rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyv 227 (342)
T KOG1566|consen 151 ECI--RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYV 227 (342)
T ss_pred HHH--hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-cee
Confidence 332 34455566677777888888888888899999999999988777766666665433 34466677888 999
Q ss_pred HHHHHHHHHHHHhcC--Ch-HHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC
Q 035507 520 IKKEVSWIISNIACG--NR-EQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG 577 (684)
Q Consensus 520 v~~~a~~~L~nl~~~--~~-~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~ 577 (684)
.++.+...++.+.-+ +. ...+++-+..-+..++.+|.++...++-+|-....-.....
T Consensus 228 tkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 999999999998753 22 22344445567899999999999999999998888777643
No 212
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.48 E-value=0.46 Score=36.70 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=50.8
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHh
Q 035507 478 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDA 545 (684)
Q Consensus 478 ~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 545 (684)
.+.|++++++++... ...+.+.+.++++.++++..+.+...+|-.|.++|+-++.. .+....+-+.
T Consensus 4 lKaaLWaighIgss~-~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP-LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhcCh-HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHc
Confidence 568999999998744 46666667899999999998775788999999999988763 3444444443
No 213
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.87 Score=48.68 Aligned_cols=156 Identities=18% Similarity=0.161 Sum_probs=97.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507 253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEF-LMREDYPQLQFQAAWALTNIASGTSENTKVVI 331 (684)
Q Consensus 253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~l-L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~ 331 (684)
.+.+++.+.|+-.+..++-.+.--..+. . ..|++..++.. .++.+ .++|..|+.+|+-+|..++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GT-g------n~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGT-G------NLGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDR------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcC-C------cchhHhhhheeecccCc-hHHHHHHHHheeeeEecCc-------
Confidence 3444555666666666655554322221 1 23567777777 45555 7999999999999998544
Q ss_pred hcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCC
Q 035507 332 EHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR 410 (684)
Q Consensus 332 ~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~ 410 (684)
..++..+++|.. .++.||...+.+|+-.|...-. .. ++ -++..|..++..-+++.|+-+++-+.....+
T Consensus 585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---~~----a~-diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---KV----AT-DILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc---HH----HH-HHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 456666776654 7899999999999987755422 00 12 2334444677777888888888766554433
Q ss_pred CChhhhhchHHHHHHHhcCCcHH
Q 035507 411 PLFDQVRPALPALAQLIHSNDEQ 433 (684)
Q Consensus 411 ~~~~~~~~~l~~L~~lL~~~d~~ 433 (684)
.-...+.++...+.+.+....++
T Consensus 655 ~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 655 ELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred ccChhHHHHHHHHHHHHhhhhHh
Confidence 33344566666677776655443
No 214
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.40 E-value=3.6 Score=38.31 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=81.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCch
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRD 370 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~ 370 (684)
.-+.|+..+-.+.++.+|..|+.++..+..+...+-...-+... .. .....-......+..
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~--------~~~sFtslS~tLa~~i~~---------- 101 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKG--------PSGSFTSLSSTLASMIME---------- 101 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCC--------CCCCcccHHHHHHHHHHH----------
Confidence 44555555544334899999999999999864332222221110 00 001111111111111
Q ss_pred hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC--CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP--RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
.-..|+..+....+..+....+.++..+....| .-.......++..+..++.+.|++++..++.+++.+.
T Consensus 102 ------lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 102 ------LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred ------HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 134566666666677788888889999988874 3344555777777788888999999999999998887
No 215
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.28 E-value=2.6 Score=48.56 Aligned_cols=187 Identities=12% Similarity=0.080 Sum_probs=131.5
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhh
Q 035507 337 PIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQV 416 (684)
Q Consensus 337 ~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~ 416 (684)
+.+-.-+.++++.-|..|+..+..+..... ........|.+..++.....+.+..+...++.+|..++...........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 344445566677777777777777765543 1112223445666677776788888899999999999988755556667
Q ss_pred hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChh-h
Q 035507 417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF-Q 495 (684)
Q Consensus 417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~ 495 (684)
...+|.+++-+......++..+..++-.++ ... .-..+.+.+...+++.++.++..+...+.......+. .
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~-ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAIL-NST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHH-hcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 888899998888888888777777776666 211 1123577888999999999999988888777655441 1
Q ss_pred HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 496 TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 496 ~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
...-.-.+.+|.++....+. +.+||..|..+++-+..
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred cchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 11111235788888888888 99999999998887754
No 216
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.93 E-value=3.4 Score=43.45 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC------CCCcccHhHHHHHHHHHHcCChh-----------
Q 035507 432 EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG------HPSPSVLTPALWTVGNIVMGDDF----------- 494 (684)
Q Consensus 432 ~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~------~~~~~v~~~al~~L~nl~~~~~~----------- 494 (684)
..-+.+|+..+..++ .........+ +...+..++. ..++.-+..|++.++.++.....
T Consensus 225 ~TrR~AA~dfl~~L~-~~~~~~v~~i----~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 225 DTRRRAACDFLRSLC-KKFEKQVTSI----LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp -SHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred CCcHHHHHHHHHHHH-HHHhHHHHHH----HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 455677888888888 3222211111 1222333332 34566778899999999865532
Q ss_pred -hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHH
Q 035507 495 -QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAI 570 (684)
Q Consensus 495 -~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL 570 (684)
....+....++|.|. --.+. .+-++..|++.+......-+.. .+ .+++|.+++.|.+++.-|...|+.|+
T Consensus 300 v~v~~Ff~~~v~peL~-~~~~~-~piLka~aik~~~~Fr~~l~~~--~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQ-PDVNS-HPILKADAIKFLYTFRNQLPKE--QL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHTCHHHH--SS-S--HHHHHHHHHHHHHHGGGS-HH--HH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhc-ccCCC-CcchHHHHHHHHHHHHhhCCHH--HH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 223444555666665 11233 6779999999999886642221 12 24799999999999999999999875
No 217
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.89 E-value=1.7 Score=42.78 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=83.0
Q ss_pred cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc
Q 035507 477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ 556 (684)
Q Consensus 477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~ 556 (684)
....|++.|.-++--++..+..+-+...+..++.+|.....+.++..+..+|..+...++.+...+-+.+++..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 35567888888887788778888888999999999965447889999999999999888899998999999999999998
Q ss_pred cC--CHhHHHHHHHHHHHhhc
Q 035507 557 NA--EFDIKEEAAWAISNASS 575 (684)
Q Consensus 557 ~~--~~~v~~~a~~aL~nl~~ 575 (684)
+. +.+++-.+...|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 76 67777777777776664
No 218
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.86 E-value=0.39 Score=52.40 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=107.9
Q ss_pred hHHHHHHhcCC----CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChH
Q 035507 462 VCGRLVELLGH----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE 537 (684)
Q Consensus 462 ~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 537 (684)
+.|.+.+...+ .++.++..|--+|..+.+-+..... .-+|.++..+...++|.+|..|.-.++.++.....
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 34444444443 5778888888888888776654443 35899999998443999999999999998764323
Q ss_pred HHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHH
Q 035507 538 QIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENIL 617 (684)
Q Consensus 538 ~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il 617 (684)
.+.. .-..|++-|.+.+..|++.|.-++.++...|. +.-.|-+..+..+|.++|.++...|--.+..+.
T Consensus 968 ~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 968 TADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 2222 34567888889999999999999999987552 224677888889999999999888888888877
Q ss_pred hccccc
Q 035507 618 KVGEAE 623 (684)
Q Consensus 618 ~~~~~~ 623 (684)
...+..
T Consensus 1037 ~KdNt~ 1042 (1128)
T COG5098 1037 KKDNTM 1042 (1128)
T ss_pred hcccch
Confidence 765443
No 219
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.83 E-value=14 Score=46.69 Aligned_cols=100 Identities=6% Similarity=0.056 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCc---HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCh
Q 035507 260 SDDNNLQLEATTQFQKLLSIESMP---IEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAV 336 (684)
Q Consensus 260 s~~~~~~~~a~~~L~~l~s~~~~~---~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i 336 (684)
..+..+...|+..|++++..--+. ...-.+..++.+|..++.+....++++..+.++.++..... .-+.. +.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkS-GW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKS-GW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhc-Cc
Confidence 446788999999998876543211 11123446778888888766668999999999999886222 22233 46
Q ss_pred HHHHHhcC----CCChHHHHHHHHHHHHhhCC
Q 035507 337 PIFVKLLA----SPSDDVREQAVWALGNVAAD 364 (684)
Q Consensus 337 ~~Li~lL~----~~~~~v~~~a~~~L~nLa~~ 364 (684)
+.+..++. ..++.+.+.|..++..|..+
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence 66666665 35788888899888888754
No 220
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.77 E-value=5.7 Score=41.80 Aligned_cols=274 Identities=17% Similarity=0.137 Sum_probs=136.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-CChHHHHHHHHH-HHHhhCCCCCCch
Q 035507 293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-PSDDVREQAVWA-LGNVAADSSGCRD 370 (684)
Q Consensus 293 i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~-L~nLa~~~~~~r~ 370 (684)
+..+++=|.+.....+|..++--|..-+. +++.+..+..+|.+..+++.+.. ++..+...++.+ +.-++.+.+. ..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~-~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN-MH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc-hh
Confidence 44555556544436788888888888887 89999999999999999998854 444244444444 4444444432 33
Q ss_pred hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChh-hhhchHHHHHHHhc---------CCcHHHHHHHHH
Q 035507 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFD-QVRPALPALAQLIH---------SNDEQVLTDACW 440 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~-~~~~~l~~L~~lL~---------~~d~~v~~~al~ 440 (684)
.+...+....++.++.-........... ........ ........+...+. +....-+..++.
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~--------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD--------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh--------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 3334455555566664000000000000 00000000 00111111111110 011112222333
Q ss_pred HHHhhcc-------------CCChHHHHHHHHhchHHHHHHhcC----CC-------C-----cccHhHHHHHHHHHHcC
Q 035507 441 ALFGLSG-------------DRNNDKIQAVIEAGVCGRLVELLG----HP-------S-----PSVLTPALWTVGNIVMG 491 (684)
Q Consensus 441 ~L~~L~~-------------~~~~~~~~~~~~~g~l~~L~~lL~----~~-------~-----~~v~~~al~~L~nl~~~ 491 (684)
++-.++. ...+...+.+...|++..++.++. .. . ......++++|-+.+..
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 3322210 111122445666678888888774 11 1 12344577888888766
Q ss_pred ChhhHHHHHhc--CChHHHHHHh-ccCC--ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh-------c---
Q 035507 492 DDFQTQCIINH--GAVPCLLALL-IHNH--KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL-------Q--- 556 (684)
Q Consensus 492 ~~~~~~~~i~~--g~l~~L~~lL-~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll-------~--- 556 (684)
++......+.. +.++.+...+ .... ...+...+...+.|++-+++.....+...++...+..+. .
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 66555544432 3333333332 2220 234456788899999988777666665443322222111 1
Q ss_pred ----cCCHhHHHHHHHHHHHhhcC
Q 035507 557 ----NAEFDIKEEAAWAISNASSR 576 (684)
Q Consensus 557 ----~~~~~v~~~a~~aL~nl~~~ 576 (684)
....+..--+..++.|++..
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEH 356 (361)
T ss_pred cccccccchHHHHHHHhHHHheee
Confidence 12355666677777777764
No 221
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.73 E-value=1.2 Score=40.58 Aligned_cols=136 Identities=14% Similarity=0.151 Sum_probs=93.8
Q ss_pred CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHH-HhCCHHH
Q 035507 472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVI-DAGLIGP 550 (684)
Q Consensus 472 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~g~l~~ 550 (684)
...+++|..|.-++..+. +...+ -...-+-+.+-..+... +.+-...++.+++.+--+.++....++ ..|+++.
T Consensus 16 ~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~ 90 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLES 90 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHH
T ss_pred CCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHH
Confidence 456788999988888885 21222 12222344555556555 556777888899999888888877776 6788999
Q ss_pred HHHHhc--cCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CChH-HHHHHHHHHHH
Q 035507 551 LVNLLQ--NAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC-ADPK-IVTVCLEGLEN 615 (684)
Q Consensus 551 Li~ll~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~-~~~~-v~~~al~~L~~ 615 (684)
+..++. ..+..++..++.++..-+. +...+.. +...+++.|.+..+. ++.. ++..++-+|.+
T Consensus 91 l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 91 LLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 999998 6789999999999988876 4444444 445578999999964 4444 56666655543
No 222
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.50 E-value=16 Score=38.67 Aligned_cols=307 Identities=14% Similarity=0.141 Sum_probs=155.8
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCC--CcHHHHHHcCCHHHHHHhhc----C------CCCHHHHHHHHHHHHHHhcCCchh
Q 035507 259 WSDDNNLQLEATTQFQKLLSIES--MPIEEVIESGVVPRFVEFLM----R------EDYPQLQFQAAWALTNIASGTSEN 326 (684)
Q Consensus 259 ~s~~~~~~~~a~~~L~~l~s~~~--~~~~~ii~~g~i~~Lv~lL~----~------~~~~~v~~~A~~~L~~l~~~~~~~ 326 (684)
.+.+.+.+..|-..|.+.+.... +....+. .-++.+++.++ + +.+..+..+|+.+|+.+.. +++.
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i 79 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEI 79 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHH
Confidence 34455666667666666665544 3333332 22344444432 1 1136888899999999887 5554
Q ss_pred HHHHHhcC---ChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc---c-CCchHHHHHH
Q 035507 327 TKVVIEHD---AVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN---E-HTELSMLRIA 397 (684)
Q Consensus 327 ~~~i~~~g---~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---~-~~~~~v~~~a 397 (684)
...+-+.. .+...+..+.+ .+..+...++|+|..= .+...+.....+..++..+. + -.+..+....
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q-----~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er 154 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ-----KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISER 154 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence 44443322 34555555544 3456667777777652 12223444444555555442 2 4456777788
Q ss_pred HHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc-CCCh-HHHHH---HHH----hc-----hH
Q 035507 398 TTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSG-DRNN-DKIQA---VIE----AG-----VC 463 (684)
Q Consensus 398 ~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~-~~~~-~~~~~---~~~----~g-----~l 463 (684)
+.++.++....|.........-+|.++..+-+....++..|...+..+.. -+.+ ..... ..+ .+ +.
T Consensus 155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 234 (372)
T PF12231_consen 155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC 234 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence 88888888776554444445567777776667777777766555443331 1111 11111 111 12 34
Q ss_pred HHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh---cCChHHHH
Q 035507 464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA---CGNREQIQ 540 (684)
Q Consensus 464 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~---~~~~~~~~ 540 (684)
+.+..++.+++.....+-+|..--+.-+++.....-.-...+...-..+.++ ++.+|.+|..+=..+. ..+.....
T Consensus 235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~ 313 (372)
T PF12231_consen 235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSP 313 (372)
T ss_pred HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccH
Confidence 4466666664444444444443333223321110011112444444556777 8888888765433332 22222222
Q ss_pred HHHHhCCHHHHHHHhccC-CH----hHHHHHHHHHHHhhc
Q 035507 541 AVIDAGLIGPLVNLLQNA-EF----DIKEEAAWAISNASS 575 (684)
Q Consensus 541 ~l~~~g~l~~Li~ll~~~-~~----~v~~~a~~aL~nl~~ 575 (684)
..+.. +..++...+... .. +++..+...++++..
T Consensus 314 k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 314 KRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 22222 223334344433 33 566666666666654
No 223
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.44 E-value=3.5 Score=44.24 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=112.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHhcCCchh
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED---YPQLQFQAAWALTNIASGTSEN 326 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~---~~~v~~~A~~~L~~l~~~~~~~ 326 (684)
....+.+.+.+++...|..|+..+.. ++.+.....+++...++..|.+++.++. +.++....+.++..+..+.- .
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~s-ls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDS-LSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhh-ccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence 45788889999999999988888877 5556677888999999999999998865 23555556666666555322 1
Q ss_pred HHHHHhcCChHHHHHhcC--CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507 327 TKVVIEHDAVPIFVKLLA--SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404 (684)
Q Consensus 327 ~~~i~~~g~i~~Li~lL~--~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL 404 (684)
.-..+...+|.....+.. ..+..+-..|+..|-++...++..++.+.+.-.+..++..+ +..+..+...|...+..+
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 111122233444444432 24566778899999999888877788888888899999999 677777777788777777
Q ss_pred ccCCC
Q 035507 405 CRGKP 409 (684)
Q Consensus 405 ~~~~~ 409 (684)
....+
T Consensus 241 ~~~a~ 245 (713)
T KOG2999|consen 241 FRKAP 245 (713)
T ss_pred HhhCC
Confidence 76653
No 224
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.33 E-value=33 Score=41.78 Aligned_cols=151 Identities=11% Similarity=0.116 Sum_probs=86.1
Q ss_pred HHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh---ccC--CC-----hhHHHHHHHHHHHHhcC-
Q 035507 466 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL---IHN--HK-----NSIKKEVSWIISNIACG- 534 (684)
Q Consensus 466 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL---~~~--~~-----~~v~~~a~~~L~nl~~~- 534 (684)
|++++..........|+.|++.++..-......+.+ ++..+.+.+ ++. ++ ...-....++++-++++
T Consensus 1126 L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~--cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryf 1203 (1692)
T KOG1020|consen 1126 LLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKA--CFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYF 1203 (1692)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHH--HHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhc
Confidence 333333345566778888999988743223333322 333333333 221 12 12334456777777652
Q ss_pred --------Ch--HHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChH
Q 035507 535 --------NR--EQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPK 604 (684)
Q Consensus 535 --------~~--~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~ 604 (684)
.. .+.......+++..|.......+..+|..|+.+++.++... -.+|.+..+...+...+.+.+.+
T Consensus 1204 df~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~h----p~l~~~~~v~nly~~ila~~n~~ 1279 (1692)
T KOG1020|consen 1204 DFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQH----PSLFTSREVLNLYDEILADDNSD 1279 (1692)
T ss_pred cCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhC----chhhhhHHHHHHHHHHHhhhccc
Confidence 11 11122344567778888888889999999999999998743 23444555566666666654333
Q ss_pred --HHHHHHHHHHHHHhcccc
Q 035507 605 --IVTVCLEGLENILKVGEA 622 (684)
Q Consensus 605 --v~~~al~~L~~il~~~~~ 622 (684)
....++..+..++..+++
T Consensus 1280 ~~~ki~~l~n~~~yL~eee~ 1299 (1692)
T KOG1020|consen 1280 IKSKIQLLQNLELYLLEEEK 1299 (1692)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 256666666666655443
No 225
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.30 E-value=37 Score=42.43 Aligned_cols=273 Identities=15% Similarity=0.122 Sum_probs=144.2
Q ss_pred hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCChh
Q 035507 336 VPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFD 414 (684)
Q Consensus 336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~ 414 (684)
+..++..+..+++..+-.+..+++.++..-+.. ..-....+..+..+....|+-.+..-..+++.+-+.. .-....
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 455566667788888888999999998654331 1112345667777766667766666666777776665 233334
Q ss_pred hhhchHHHHHHHhcCC-cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCc---ccHh-----------
Q 035507 415 QVRPALPALAQLIHSN-DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSP---SVLT----------- 479 (684)
Q Consensus 415 ~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~---~v~~----------- 479 (684)
.....+..+..+.+++ +|.|+.+++.++..+. +.........++ -.+..+..+|-+..+ ++..
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~-~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALIL-DSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHH-cCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 4456677777777754 5699999999999999 544333332222 233444444433211 1111
Q ss_pred --HHHHHHHHHHcCChh--hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh
Q 035507 480 --PALWTVGNIVMGDDF--QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL 555 (684)
Q Consensus 480 --~al~~L~nl~~~~~~--~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll 555 (684)
....++|+=..++.. .+.. +....+-...-++.++ ++.++.+|..++-++.--.+.+... .-+++.|..++
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLL 1107 (2067)
T ss_pred HHHHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHh
Confidence 111222222222221 1111 1111222333334455 7889999999998886433332211 11455666655
Q ss_pred ccCCHhHHHHHHHHHHHhhcCCCHHH----------------HHH-HH-HCCChHHHHhhcc-CCChHHHHHHHHHHHHH
Q 035507 556 QNAEFDIKEEAAWAISNASSRGTHDQ----------------IKY-LV-TEGCIKPLCDLLQ-CADPKIVTVCLEGLENI 616 (684)
Q Consensus 556 ~~~~~~v~~~a~~aL~nl~~~~~~~~----------------~~~-l~-~~g~l~~L~~lL~-~~~~~v~~~al~~L~~i 616 (684)
...-.-.+.....++..+......+. -.. .. +.|.=-.+..+++ ..|.+....+++++.++
T Consensus 1108 ~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~ 1187 (2067)
T KOG1822|consen 1108 SSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRM 1187 (2067)
T ss_pred cchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 54433333333333333332111100 000 11 3444444555554 45777888888888874
Q ss_pred Hh
Q 035507 617 LK 618 (684)
Q Consensus 617 l~ 618 (684)
+.
T Consensus 1188 ~~ 1189 (2067)
T KOG1822|consen 1188 LN 1189 (2067)
T ss_pred HH
Confidence 43
No 226
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.29 E-value=5.3 Score=42.87 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=112.3
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCc----ccHhHHHHHHHHHHcCChh
Q 035507 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSP----SVLTPALWTVGNIVMGDDF 494 (684)
Q Consensus 419 ~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~----~v~~~al~~L~nl~~~~~~ 494 (684)
....+...+.+++...+..++..+..++ .+......++....+..|..++.++.. .+...+++++..+....-.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls--~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLS--LDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcc--ccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 3455777888888888888999999988 677788889999999999999987643 4445555555555433211
Q ss_pred hHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507 495 QTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA 573 (684)
Q Consensus 495 ~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl 573 (684)
.-. .+...++.....+..-. .+..+-..|...|-++..++....+.+.+.--+..|+..++..+..++..|...+..+
T Consensus 162 sW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 162 SWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 111 11111222222332111 1456777888888888888777777777777799999999999999998888888778
Q ss_pred hcCCCHHHHHHHH
Q 035507 574 SSRGTHDQIKYLV 586 (684)
Q Consensus 574 ~~~~~~~~~~~l~ 586 (684)
...+.++.+..+.
T Consensus 241 ~~~a~~~~R~~~~ 253 (713)
T KOG2999|consen 241 FRKAPDDKRFEMA 253 (713)
T ss_pred HhhCChHHHHHHH
Confidence 7766655444433
No 227
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=92.07 E-value=11 Score=37.88 Aligned_cols=204 Identities=11% Similarity=0.097 Sum_probs=132.7
Q ss_pred HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhc-C-CHHHHHHHhccCC-chHHHHHHHHHHHHh
Q 035507 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE-G-ALIPLLAQLNEHT-ELSMLRIATTTLSNL 404 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~-g-~l~~Ll~~L~~~~-~~~v~~~a~~~L~nL 404 (684)
..+.++|.+..++..+...+-+-+..++.+..|+-+..-+.|....+. . -...+..++.... .+++.-.+...+...
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 345678999999999998888888889999988875443333222110 0 1122222232222 255555555555555
Q ss_pred ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhch----HHHHHHhcCCCCcccHhH
Q 035507 405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGV----CGRLVELLGHPSPSVLTP 480 (684)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~----l~~L~~lL~~~~~~v~~~ 480 (684)
.+...-......+.-+......++.+.-++..+|..+...+. ......+..+..... .+.--.++.+.+--++..
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~ll-t~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELL-TRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHH-HHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 555322223333555556666667777789999999998887 444444444444432 333667788899999999
Q ss_pred HHHHHHHHHcCChh---hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 481 ALWTVGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 481 al~~L~nl~~~~~~---~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
+...+|.+..+.+. .++.+-...-+..++.+|.++ +..+|-+|..+..-..+
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence 99999999865542 234444446788999999999 99999999988887776
No 228
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=91.76 E-value=31 Score=40.22 Aligned_cols=114 Identities=12% Similarity=0.144 Sum_probs=71.3
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccC
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNT 626 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~ 626 (684)
+...+...+..++....+....++.++..-......+ ...-+++-..-.+..-..+...+..+|.++.....
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~----- 513 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP----- 513 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----
Confidence 4556666677778888888888888886521110000 01111111111122222344555555555555533
Q ss_pred CCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 035507 627 DSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGR 675 (684)
Q Consensus 627 ~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e 675 (684)
......+.+.+....+-.+.-|+++++|+-|.+++...|+.+
T Consensus 514 -------~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 514 -------SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred -------HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence 236678888888999999999999999999999999999744
No 229
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.72 E-value=15 Score=36.58 Aligned_cols=224 Identities=14% Similarity=0.083 Sum_probs=133.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC-CchHHHHHHHHHHHHhccCCCCCChhhh
Q 035507 338 IFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH-TELSMLRIATTTLSNLCRGKPRPLFDQV 416 (684)
Q Consensus 338 ~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~ 416 (684)
.|-..|.++++.+|..|+..|+.+...-+. + .+....+..|+....+. .|......++.++..|.+.. .......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~--~-~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPP--D-FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCH--h-hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence 455678889999999999999998866543 1 12333456666555322 35555555677777776443 2222223
Q ss_pred hchHHHHHHHhc--CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHHHHHHHcCCh
Q 035507 417 RPALPALAQLIH--SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWTVGNIVMGDD 493 (684)
Q Consensus 417 ~~~l~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~ 493 (684)
..++..+.+-.. +--...+..+...+..+. .......+ -...+++..+++.+.. .+|.-...+...+..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~-~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLL-ENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHH-HHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 344444443222 223667888888888887 43322221 1223577777887765 466666777777777765444
Q ss_pred hhHHHHHhcCChHHHHHHh--------ccCC-Ch--hHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhH
Q 035507 494 FQTQCIINHGAVPCLLALL--------IHNH-KN--SIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDI 562 (684)
Q Consensus 494 ~~~~~~i~~g~l~~L~~lL--------~~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v 562 (684)
- ....+.+...+ ..+. ++ -.+..-..+|.+....++... .-.+|.|++=|.++...+
T Consensus 157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHH
Confidence 1 12233333333 1111 22 234445556666655554432 236899999999999999
Q ss_pred HHHHHHHHHHhhcCCCH
Q 035507 563 KEEAAWAISNASSRGTH 579 (684)
Q Consensus 563 ~~~a~~aL~nl~~~~~~ 579 (684)
|..++.+|..++..-..
T Consensus 225 K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 225 KLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHHHHHHHHHHCCH
Confidence 99999999988864433
No 230
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.43 E-value=42 Score=41.02 Aligned_cols=143 Identities=10% Similarity=0.075 Sum_probs=94.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESM-PIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~-~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
.+..++..+..+-..+|-.|+++|..+...++. .....+..|+. .-+.+.. ..||+.|+..++......++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~Dss-asVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSS-ASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence 456777777777789999999999999988761 11222333333 3334445 68999999999977664554443
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc--CCchHHHHHHHHHHHHhcc
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE--HTELSMLRIATTTLSNLCR 406 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~--~~~~~v~~~a~~~L~nL~~ 406 (684)
... ..+..-+.++...||..++.++..+|...|.+-.. ......++.. +....++.-++.++.++--
T Consensus 892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 332 34455556678899999999999999888875332 2333334432 2233478888888888776
Q ss_pred CC
Q 035507 407 GK 408 (684)
Q Consensus 407 ~~ 408 (684)
.+
T Consensus 961 ~p 962 (1692)
T KOG1020|consen 961 TP 962 (1692)
T ss_pred cC
Confidence 65
No 231
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=91.06 E-value=27 Score=38.20 Aligned_cols=252 Identities=12% Similarity=0.083 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH
Q 035507 262 DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK 341 (684)
Q Consensus 262 ~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~ 341 (684)
..+.|..|...+..++......... .. ..+.+.+..+..++.-..-+.+|..++.+..+. ...+.+..+.|..
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~~-~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~ 114 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSGL-MR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLS 114 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccHH-HH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHH
Confidence 4577888888888877665421110 01 122333333322322223344444455533333 2245666777776
Q ss_pred hcCC---------------------------CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHH
Q 035507 342 LLAS---------------------------PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSML 394 (684)
Q Consensus 342 lL~~---------------------------~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~ 394 (684)
.|.. .+.......+..+.|+...+...-+.-.-.+.+..++..+....+....
T Consensus 115 wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di 194 (464)
T PF11864_consen 115 WLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDI 194 (464)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHH
Confidence 6531 1223344556666666655543222222234455566666566666666
Q ss_pred HHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC--
Q 035507 395 RIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-- 472 (684)
Q Consensus 395 ~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-- 472 (684)
+.++..+-.+.... ..+......++..|....... +....+-.++.||+ ..... . ..+..|..+|..
T Consensus 195 ~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~-~S~~g-~------~~i~~L~~iL~~~~ 263 (464)
T PF11864_consen 195 EACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLL-KSHLG-H------SAIRTLCDILRSPD 263 (464)
T ss_pred HHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHH-cCccH-H------HHHHHHHHHHcccC
Confidence 77777777666654 222334455555555553333 56666777888888 32211 1 245667777732
Q ss_pred ----CCcccHhHHHHHHHHHHcCChhhHHHHHhc---CChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 035507 473 ----PSPSVLTPALWTVGNIVMGDDFQTQCIINH---GAVPCLLALLIHNHKNSIKKEVSWIISNIA 532 (684)
Q Consensus 473 ----~~~~v~~~al~~L~nl~~~~~~~~~~~i~~---g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 532 (684)
++..+..-|+..++.+..+.......-+.. -+++.+...+... +..+-.+....+.++.
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 234456678888888887663222211221 2678888888877 6767777777777765
No 232
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=90.72 E-value=2.5 Score=39.88 Aligned_cols=124 Identities=14% Similarity=0.097 Sum_probs=79.6
Q ss_pred CCcHHHHHHHHHHHHhhccCCChHHHHHHHH----------------hchHHHHHHhcCC------CCcccHhHHHHHHH
Q 035507 429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIE----------------AGVCGRLVELLGH------PSPSVLTPALWTVG 486 (684)
Q Consensus 429 ~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~----------------~g~l~~L~~lL~~------~~~~v~~~al~~L~ 486 (684)
.++......++..|+|++ ..+ .....+++ ...+..|+.++.. ....-....+.++.
T Consensus 6 ~~~~~~adl~~MLLsNlT-~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLT-RSD-SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred CCCcchHHHHHHHHHHhc-cch-HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 344455666778888888 433 33332222 2356677777654 23445567788999
Q ss_pred HHHcCChhhHHHHHhc--CC--hHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH--hCCHHHHHHHhc
Q 035507 487 NIVMGDDFQTQCIINH--GA--VPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID--AGLIGPLVNLLQ 556 (684)
Q Consensus 487 nl~~~~~~~~~~~i~~--g~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~g~l~~Li~ll~ 556 (684)
|++... ..++.+++. +. +..|+..+.+. +..-|.-++.+|.|+|-....+-..+-+ .+++|.|+--+.
T Consensus 84 NlS~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 84 NLSQLP-EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HhcCCH-HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 998754 477777754 33 77888888888 7777888899999999876555333322 466777666554
No 233
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.64 E-value=10 Score=40.63 Aligned_cols=255 Identities=12% Similarity=0.124 Sum_probs=139.1
Q ss_pred HHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-CC
Q 035507 270 TTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-PS 347 (684)
Q Consensus 270 ~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-~~ 347 (684)
-..|.+++...+ .+....++...+..|+.++.+++ +.-|.....+|..+-......|..+.. .+...+.+++.. ..
T Consensus 111 Y~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 111 YEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCccc
Confidence 344444444332 22333556677889999999998 999999999999988756666665543 345556666654 34
Q ss_pred hHHHHHHHHHHHHhhCCCC-CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHH
Q 035507 348 DDVREQAVWALGNVAADSS-GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQL 426 (684)
Q Consensus 348 ~~v~~~a~~~L~nLa~~~~-~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~l 426 (684)
..-...++..++.+..+-. ..++.... -....++.+.....-.........++..++..+|. ....++..+++.
T Consensus 189 ~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~llk~ 263 (409)
T PF01603_consen 189 HNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLLKH 263 (409)
T ss_dssp -STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHh
Confidence 4455678888888876532 22221110 01122233332222233344555555555554331 112223333333
Q ss_pred hcCCcHHHHHHHHHHHHhhccCC-ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc---
Q 035507 427 IHSNDEQVLTDACWALFGLSGDR-NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH--- 502 (684)
Q Consensus 427 L~~~d~~v~~~al~~L~~L~~~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~--- 502 (684)
=-..+..-..--+.-+..+. .. ++.....+ ...++..+..++.+++..|.+.|+..+.|= ... .++..
T Consensus 264 WP~t~s~Kev~FL~el~~il-~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~~-~li~~~~~ 335 (409)
T PF01603_consen 264 WPKTNSQKEVLFLNELEEIL-EVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNNE-----YFL-SLISQNSR 335 (409)
T ss_dssp S-SS-HHHHHHHHHHHHHHH-TT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HHH-HHHHCTHH
T ss_pred CCCCCchhHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HHH-HHHHhChH
Confidence 22445555555556666666 33 22333322 234778888899999999988888765442 111 12211
Q ss_pred CChHHHHHHhc-----cCCChhHHHHHHHHHHHHhcCChHHHH
Q 035507 503 GAVPCLLALLI-----HNHKNSIKKEVSWIISNIACGNREQIQ 540 (684)
Q Consensus 503 g~l~~L~~lL~-----~~~~~~v~~~a~~~L~nl~~~~~~~~~ 540 (684)
.++|.+..-+. +- +..+|..|..++.-+..-+++...
T Consensus 336 ~i~p~i~~~L~~~~~~HW-n~~Vr~~a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 336 VILPIIFPALYRNSKNHW-NQTVRNLAQNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHHHSSTTSS-S-STTHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhCHHHHH
Confidence 25666666663 33 678999999999988876655443
No 234
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=90.56 E-value=24 Score=39.50 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=102.6
Q ss_pred ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHh-cCCCCcccHhHHHHHHHHHHc
Q 035507 412 LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVEL-LGHPSPSVLTPALWTVGNIVM 490 (684)
Q Consensus 412 ~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~ 490 (684)
.......++|.|..-+.+.+..+++.++..+...+ +.-+ -..+..-++|++..+ +.+.+..++..++-|++.++.
T Consensus 383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~-e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q 458 (700)
T KOG2137|consen 383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVA-ESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ 458 (700)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHH-Hhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999998888 3322 234555678888877 355778899999999999983
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHH--HHHH
Q 035507 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKE--EAAW 568 (684)
Q Consensus 491 ~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~--~a~~ 568 (684)
.-+ ...+++ .+..+.+..... ++.+......+..++....... ..++...++|.++-+...+.....+ ..+.
T Consensus 459 ~lD--~~~v~d--~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~ 532 (700)
T KOG2137|consen 459 RLD--KAAVLD--ELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGEQYNKYMS 532 (700)
T ss_pred HHH--HHHhHH--HHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHHHHHHHHH
Confidence 322 111222 344444555556 7777777777766665532222 3455567899999887766433332 2334
Q ss_pred HHHHhhcCCCHHH
Q 035507 569 AISNASSRGTHDQ 581 (684)
Q Consensus 569 aL~nl~~~~~~~~ 581 (684)
.+..+...-.+.+
T Consensus 533 ~i~~ml~~ie~~~ 545 (700)
T KOG2137|consen 533 EIRLMLSAIEKPR 545 (700)
T ss_pred HHHHHHhhhhHHH
Confidence 4444444333333
No 235
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=90.56 E-value=34 Score=43.49 Aligned_cols=269 Identities=9% Similarity=0.083 Sum_probs=147.1
Q ss_pred CCCChHHHHHHHHHHHHhhCCCCC---CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchH
Q 035507 344 ASPSDDVREQAVWALGNVAADSSG---CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPAL 420 (684)
Q Consensus 344 ~~~~~~v~~~a~~~L~nLa~~~~~---~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l 420 (684)
.+++..++-.|+..|..++..--. ....-.+...+.|+...+....+.+++..++.++.++..............++
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence 345677888888888887742221 11111233467888888877888899999999999887664322222223344
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHH--hc----hHHHHHHhcCCC-CcccHhHHHHHHHHHHc---
Q 035507 421 PALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIE--AG----VCGRLVELLGHP-SPSVLTPALWTVGNIVM--- 490 (684)
Q Consensus 421 ~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~--~g----~l~~L~~lL~~~-~~~v~~~al~~L~nl~~--- 490 (684)
..+.......++.+...|..++..+. .. ....+.. .+ .+..+..+.... +.++-..|+..+.+++.
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~-~d---~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKII-RE---YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHH-Hh---hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 44443444667888888888887776 21 1111111 12 333344443332 35666677777765521
Q ss_pred -CCh-----------------------hhH-----HHHHhcCChHHHHHH---hccCCChhHHHHHHHHHHHHhc--C--
Q 035507 491 -GDD-----------------------FQT-----QCIINHGAVPCLLAL---LIHNHKNSIKKEVSWIISNIAC--G-- 534 (684)
Q Consensus 491 -~~~-----------------------~~~-----~~~i~~g~l~~L~~l---L~~~~~~~v~~~a~~~L~nl~~--~-- 534 (684)
+.- ... ........+|.|..+ ..++ +.+||..|..+|-.+.. |
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhcc
Confidence 100 000 000011234444443 4555 89999999999988764 2
Q ss_pred -ChHHHHHHHHhCCHHHHHHHhccC-------------------C-------HhHHHHHHHHHHHhhcCCCHHHHHHHH-
Q 035507 535 -NREQIQAVIDAGLIGPLVNLLQNA-------------------E-------FDIKEEAAWAISNASSRGTHDQIKYLV- 586 (684)
Q Consensus 535 -~~~~~~~l~~~g~l~~Li~ll~~~-------------------~-------~~v~~~a~~aL~nl~~~~~~~~~~~l~- 586 (684)
+++.-..++. +++.+++..+... + .++...|+..+.++.. .+...+-
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft----~fFd~L~~ 1456 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV----KFYPTVNP 1456 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3334444444 4555555555321 0 1222233333333332 1222221
Q ss_pred -HCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 587 -TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 587 -~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
=.+++..|..+...++..+......+|.+++..+..
T Consensus 1457 ~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1457 LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 134566666666777888888888888888765443
No 236
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=90.47 E-value=24 Score=36.62 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=112.2
Q ss_pred HHHHHHhcCCCCcccHhHHHHHHHHHHc-CChhhHHHHHhc-C-ChHHHHHHhccCC----C--------hhHHHHHHHH
Q 035507 463 CGRLVELLGHPSPSVLTPALWTVGNIVM-GDDFQTQCIINH-G-AVPCLLALLIHNH----K--------NSIKKEVSWI 527 (684)
Q Consensus 463 l~~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~i~~-g-~l~~L~~lL~~~~----~--------~~v~~~a~~~ 527 (684)
+..+...|......+..++++.+..++. ......+.+... . -.+.+.+++.... + +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888999888899999999999998 555666666643 1 2345555553220 1 2788877755
Q ss_pred H-HHHhcCChHHHHHHHH-hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC---CHHHHHHHHHCCChHHHHhhccCCC
Q 035507 528 I-SNIACGNREQIQAVID-AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG---THDQIKYLVTEGCIKPLCDLLQCAD 602 (684)
Q Consensus 528 L-~nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~g~l~~L~~lL~~~~ 602 (684)
+ +.+..+++..+..+++ .+.+..+.+-|..+++++....+.++..-+... .......+.+...+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 4 4455577777766664 567888888888888999999998888544322 2333444556668899999888877
Q ss_pred h----HHHHHHHHHHHHHHhc
Q 035507 603 P----KIVTVCLEGLENILKV 619 (684)
Q Consensus 603 ~----~v~~~al~~L~~il~~ 619 (684)
+ .+...+.+.|..++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 7 8899999999888854
No 237
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=90.34 E-value=21 Score=35.65 Aligned_cols=214 Identities=16% Similarity=0.133 Sum_probs=122.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHh
Q 035507 296 FVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVL 373 (684)
Q Consensus 296 Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~ 373 (684)
|=..|.+++ +.+|..|+..|+.+...-+... ....-+..|+.++.+ .+......++.++..|.....-.
T Consensus 4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~----- 74 (262)
T PF14500_consen 4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS----- 74 (262)
T ss_pred hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC-----
Confidence 445677777 8999999999999887444221 222235556665443 45555555677777777433211
Q ss_pred hcCCHHHHHHHhccC-----CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhcc
Q 035507 374 SEGALIPLLAQLNEH-----TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLSG 447 (684)
Q Consensus 374 ~~g~l~~Ll~~L~~~-----~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~ 447 (684)
.+....++..+.+. .....+..+...+..+...........-...+..+++.+. ..||.-..-+...+..+.
T Consensus 75 -~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~- 152 (262)
T PF14500_consen 75 -PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL- 152 (262)
T ss_pred -hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-
Confidence 11133333333222 2334566666777766655321112222456666666666 457888777777777666
Q ss_pred CCChHHHHHHHHhchHHHHHHhcC--------C-C-C--cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC
Q 035507 448 DRNNDKIQAVIEAGVCGRLVELLG--------H-P-S--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN 515 (684)
Q Consensus 448 ~~~~~~~~~~~~~g~l~~L~~lL~--------~-~-~--~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~ 515 (684)
..-+ . ....+-+...+. . + + .-.+..--..|.+....++.... -.+|.|++-|.++
T Consensus 153 ~~~~------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~ 220 (262)
T PF14500_consen 153 QEFD------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDST 220 (262)
T ss_pred Hhcc------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCC
Confidence 3222 1 222333333331 1 1 1 12334444556555555553332 4789999999998
Q ss_pred CChhHHHHHHHHHHHHhc
Q 035507 516 HKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 516 ~~~~v~~~a~~~L~nl~~ 533 (684)
.+.++..+..+|..++.
T Consensus 221 -~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 221 -SPSVKLDSLQTLKACIE 237 (262)
T ss_pred -CcHHHHHHHHHHHHHHH
Confidence 88899999999998876
No 238
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.31 E-value=0.73 Score=37.59 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=63.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.+...++.+.++.+-+|-.|+..|++++.... ....-..+++..+...|++++ +-+-..|+.+|..++...++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~---- 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD---- 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH----
Confidence 46778888999999999999999999998765 111223467888889999988 89999999999999984443
Q ss_pred HHhcCChHHHHHhc
Q 035507 330 VIEHDAVPIFVKLL 343 (684)
Q Consensus 330 i~~~g~i~~Li~lL 343 (684)
.+++.|++..
T Consensus 77 ----~vl~~L~~~y 86 (92)
T PF10363_consen 77 ----EVLPILLDEY 86 (92)
T ss_pred ----HHHHHHHHHH
Confidence 2456666543
No 239
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.19 E-value=6.8 Score=36.50 Aligned_cols=146 Identities=15% Similarity=0.178 Sum_probs=91.8
Q ss_pred ccHhHHHHHHHHHHcCCh-hh----HHHHHh------cCChHHHHH-HhccCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 035507 476 SVLTPALWTVGNIVMGDD-FQ----TQCIIN------HGAVPCLLA-LLIHNHKNSIKKEVSWIISNIACGNREQIQAVI 543 (684)
Q Consensus 476 ~v~~~al~~L~nl~~~~~-~~----~~~~i~------~g~l~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 543 (684)
++|..|+.+|..++...+ .. -..++- .+.-+.|+. ++.++ ++++|..|+.++..+..+........-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 367788888888876622 11 111111 123334444 45666 999999999999999887655444332
Q ss_pred Hh-------------------CCHHHHHHHhccC-CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCh
Q 035507 544 DA-------------------GLIGPLVNLLQNA-EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADP 603 (684)
Q Consensus 544 ~~-------------------g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~ 603 (684)
+. .+-..|+..++.+ +..+....+.++..++.....+..+.=.-..++..+..++.+.|+
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 21 1234455555554 777888888999988875433322110111245666677788999
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 035507 604 KIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 604 ~v~~~al~~L~~il~~~~~ 622 (684)
+++..++.++..++.....
T Consensus 160 ~v~v~~l~~~~~l~s~~~~ 178 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQPP 178 (182)
T ss_pred cHHHHHHHHHHHHHcCCCC
Confidence 9999999999988876543
No 240
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.12 E-value=36 Score=38.08 Aligned_cols=235 Identities=12% Similarity=0.033 Sum_probs=133.4
Q ss_pred hhchHHHHHH-HhcCCcHHHHHHHHHHHHhhccCC--ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC-
Q 035507 416 VRPALPALAQ-LIHSNDEQVLTDACWALFGLSGDR--NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG- 491 (684)
Q Consensus 416 ~~~~l~~L~~-lL~~~d~~v~~~al~~L~~L~~~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~- 491 (684)
..++++.++. .++.....+-...-..|++.. .. .....+.++-.=.=|.|..-|+.++..+|..|+..+-++---
T Consensus 127 E~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~-hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 127 ENDCIQDFMFHAIHAPRSPVHSKVREVLSYFH-HQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 3555555443 334333345555555566555 11 111122222222235566667888999999999999887532
Q ss_pred -Ch---hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhC----CHHHHHHHhc-cCCHhH
Q 035507 492 -DD---FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAG----LIGPLVNLLQ-NAEFDI 562 (684)
Q Consensus 492 -~~---~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g----~l~~Li~ll~-~~~~~v 562 (684)
.+ +..+.+++ .-...+.++|.++ -+.||..|...++.+.... ..++-.. ++..+..-+. +...+|
T Consensus 206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~f----We~iP~~i~~~ll~kI~d~~a~dt~s~V 279 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITSKF----WEMIPPTILIDLLKKITDELAFDTSSDV 279 (1005)
T ss_pred CCCccHHHHHHHHH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhhhccchhe
Confidence 22 23344444 3456788999998 9999999998888775421 1122112 2222333222 235577
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHH
Q 035507 563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEE 642 (684)
Q Consensus 563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~ 642 (684)
|......|.-++. ++..-.. .+. +++.+-..|.+....|+.++.+.|..|-.+-. .....-
T Consensus 280 R~svf~gl~~~l~--np~sh~~-le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra---------------~~f~~I 340 (1005)
T KOG1949|consen 280 RCSVFKGLPMILD--NPLSHPL-LEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAVRA---------------AKFWKI 340 (1005)
T ss_pred ehhHhcCcHHHHc--CccchhH-HHH-HHHhcchhhhccchhHHHHHHHHHHHHHhhhh---------------hhhhcc
Confidence 7777777776665 2221111 121 45566677778888999999988887655421 122221
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 035507 643 AEGLEKIENLQSHDNNEIHEKSVKILETYWCGRV 676 (684)
Q Consensus 643 ~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e~ 676 (684)
+---+.|..|...+-+--+..+.-|+..||+...
T Consensus 341 ~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k 374 (1005)
T KOG1949|consen 341 CPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNK 374 (1005)
T ss_pred ccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCC
Confidence 2222345555555555556778888888887654
No 241
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=90.04 E-value=22 Score=35.44 Aligned_cols=179 Identities=17% Similarity=0.131 Sum_probs=104.9
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-------CchhHHHHHhcCChHHHHHhcCCCC----hHHHHHHHHHHH
Q 035507 291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASG-------TSENTKVVIEHDAVPIFVKLLASPS----DDVREQAVWALG 359 (684)
Q Consensus 291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~-------~~~~~~~i~~~g~i~~Li~lL~~~~----~~v~~~a~~~L~ 359 (684)
|+-+.+.+-+.++. ....++..|..++.. +++.|-.+.-.+.+|.++.-+.+++ ......++..|+
T Consensus 64 Glq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 64 GLQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred hHHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 34444444445444 344556666666552 2223333333456788888777766 234456778888
Q ss_pred HhhCCCCCCchhHhhcCCHHHHHHHhccCC---chHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHH
Q 035507 360 NVAADSSGCRDLVLSEGALIPLLAQLNEHT---ELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLT 436 (684)
Q Consensus 360 nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~---~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~ 436 (684)
.+|..... ..+..++....... ..+..+.++..|..-.. |. .....+..++.++..+-+.++.
T Consensus 141 ~~a~~~~~--------~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 141 QVAEAQGL--------PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHhCCC--------ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHH
Confidence 88844321 12444444443332 23444444444443221 21 2245667788899888899999
Q ss_pred HHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507 437 DACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD 492 (684)
Q Consensus 437 ~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 492 (684)
.++..|..+. ...+-... ...+++..+.++++++ .-..|+.++-++...+
T Consensus 207 ~~L~iL~~ll-~~~d~~~~--~~~dlispllrlL~t~---~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 207 KTLQILKVLL-PHVDMRSP--HGADLISPLLRLLQTD---LWMEALEVLDEIVTRS 256 (262)
T ss_pred HHHHHHHHHh-ccccCCCC--cchHHHHHHHHHhCCc---cHHHHHHHHHHHHhhc
Confidence 9999999888 44333322 5556888899999765 4567777777765433
No 242
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.03 E-value=8.2 Score=42.75 Aligned_cols=187 Identities=12% Similarity=0.085 Sum_probs=117.6
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh-----HHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh
Q 035507 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNN-----DKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD 493 (684)
Q Consensus 419 ~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~-----~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 493 (684)
.-|.+.+-|...+..|+.+|+..+.++- .-.+ +..+.+++. -+..+..+|.++.+.+|..|..-+..+...-
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~f-P~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f- 251 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAF-PIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKF- 251 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhc-cCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-
Confidence 3456667778889999999999988765 3221 222333332 3577899999999999999988777765421
Q ss_pred hhHHHHHhcCC----hHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHH
Q 035507 494 FQTQCIINHGA----VPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWA 569 (684)
Q Consensus 494 ~~~~~~i~~g~----l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~a 569 (684)
-.++-..+ +..+..-+......+||-.....|..++.... .-.+.+. ++|.+-..|.+....||-.+...
T Consensus 252 ---We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ 325 (1005)
T KOG1949|consen 252 ---WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQ-LLPALRYSLHDNSEKVRVAFVDM 325 (1005)
T ss_pred ---HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHH-HHHhcchhhhccchhHHHHHHHH
Confidence 12222222 23333333333256788888888888876421 1223333 57777788888889999888888
Q ss_pred HHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507 570 ISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK 618 (684)
Q Consensus 570 L~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~ 618 (684)
|..+=.. ....+..---.+.+..-|..++..+....+..+-+.+-
T Consensus 326 ll~ik~v----ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 326 LLKIKAV----RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred HHHHHhh----hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 8776431 11222233336677777777777777766666655543
No 243
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.88 E-value=2.3 Score=42.28 Aligned_cols=142 Identities=11% Similarity=0.142 Sum_probs=94.6
Q ss_pred HHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507 463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV 542 (684)
Q Consensus 463 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 542 (684)
+...+..|.+.++.....++..|..++...++.....+. .++..+++-+.+. ...|-+.||.+++.|...-...+...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888888888888888888766644433332 3555666667777 78899999999999987433444332
Q ss_pred HHhCCHHHHHHHhcc---CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507 543 IDAGLIGPLVNLLQN---AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK 618 (684)
Q Consensus 543 ~~~g~l~~Li~ll~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~ 618 (684)
.+ ..+..++.. .+.-++..|-.||..++....+.. ++..|...+.+.++.++..+.....+...
T Consensus 168 ld----~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 168 LD----DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HH----HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccce
Confidence 22 222333333 245578889999999988666543 45667777888888887777666555443
No 244
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.80 E-value=5.2 Score=45.70 Aligned_cols=197 Identities=18% Similarity=0.145 Sum_probs=108.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC----CChHHHHHHHHHHHHhhCCCCC
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS----PSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
.+..+.+++....- -...|++.|..+.......... .+..+..++.+ .++.++..|+.+++.++.....
T Consensus 396 av~~i~~~I~~~~~--~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKL--TDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCC--CHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 46666777766441 1233556666655532233333 34555666654 4677889999999988732100
Q ss_pred ---------CchhHhhcCCHHHHHHHhc---cCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCC---cH
Q 035507 368 ---------CRDLVLSEGALIPLLAQLN---EHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSN---DE 432 (684)
Q Consensus 368 ---------~r~~i~~~g~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~---d~ 432 (684)
..........++.+...+. ...+..-+..++.+|+|+-. ...++.+...+... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 1111222334566666664 34566777889999999854 25678888887765 68
Q ss_pred HHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC--CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHH
Q 035507 433 QVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA 510 (684)
Q Consensus 433 ~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~ 510 (684)
.++..|++++..+. ...++. +.+.+.+++.+ .+..+|..|..+|.. + ++.. ..+..+..
T Consensus 539 ~~R~~Ai~Alr~~~-~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~--~-~P~~-------~~l~~i~~ 599 (618)
T PF01347_consen 539 FIRVAAIQALRRLA-KHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMR--C-NPSP-------SVLQRIAQ 599 (618)
T ss_dssp HHHHHHHHTTTTGG-GT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHH--T----H-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHh-hcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHh--c-CCCH-------HHHHHHHH
Confidence 89999999999887 444433 33556666644 345678877766633 2 2211 13556667
Q ss_pred HhccCCChhHHHHH
Q 035507 511 LLIHNHKNSIKKEV 524 (684)
Q Consensus 511 lL~~~~~~~v~~~a 524 (684)
.+...++..|....
T Consensus 600 ~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 600 SLWNEPSNQVASFV 613 (618)
T ss_dssp HHTT-S-HHHHHHH
T ss_pred HHhhCchHHHHHHH
Confidence 77655355555443
No 245
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.54 E-value=22 Score=34.80 Aligned_cols=139 Identities=23% Similarity=0.213 Sum_probs=92.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhH
Q 035507 293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372 (684)
Q Consensus 293 i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i 372 (684)
++.|+.-+....+++.+...+.+|..++.++..... -++..+..+...+....+.-+...+..+-..++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 445555455555589999999999999985422222 235566666666776666667777777765543211
Q ss_pred hhcCCHHHHHHHh---------ccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHh-cCCcHHHHHHHHHHH
Q 035507 373 LSEGALIPLLAQL---------NEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI-HSNDEQVLTDACWAL 442 (684)
Q Consensus 373 ~~~g~l~~Ll~~L---------~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~al~~L 442 (684)
+.+.+++..+ ......+.......++..+|...|. .....++.+..++ .+.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3455554441 1112234444556788889988765 4567788888888 788899999999999
Q ss_pred Hhhc
Q 035507 443 FGLS 446 (684)
Q Consensus 443 ~~L~ 446 (684)
..++
T Consensus 147 ~~Lc 150 (234)
T PF12530_consen 147 APLC 150 (234)
T ss_pred HHHH
Confidence 9999
No 246
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.22 E-value=7.1 Score=36.76 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=91.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
-++.+.+...+.+..++..|+..+.-++...- .|.. .+|.++.+..+++ +.++..|...+..+....+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence 35777888889999999999999988877654 3333 6899999999888 99999999999999985555444
Q ss_pred HHHhcCChHHHHHh---cCCC-ChHH---HHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC-------chHHH
Q 035507 329 VVIEHDAVPIFVKL---LASP-SDDV---REQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT-------ELSML 394 (684)
Q Consensus 329 ~i~~~g~i~~Li~l---L~~~-~~~v---~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~-------~~~v~ 394 (684)
.-...| +..-..+ +..+ .... .......+..+...+...|..+ +..++..+.... ...-.
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence 433334 2222221 1111 1111 4455666666666544444443 556666664322 23344
Q ss_pred HHHHHHHHHhccCC
Q 035507 395 RIATTTLSNLCRGK 408 (684)
Q Consensus 395 ~~a~~~L~nL~~~~ 408 (684)
....++..||+.-+
T Consensus 156 ~~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 156 DFLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHHhcCC
Confidence 55556666666553
No 247
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=89.02 E-value=51 Score=38.31 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=82.8
Q ss_pred ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh
Q 035507 476 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL 555 (684)
Q Consensus 476 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll 555 (684)
.++..+.-++++++-.++...+ ..+|.|++-|.......+|.+..-+++.+|.+. ..+++ ..+|.+-..|
T Consensus 946 ~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d-~YiP~I~~~L 1015 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTD-RYIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHH-HhhHHHHHHh
Confidence 4555666667777655543332 356777777766635556666666666665432 11233 3789999999
Q ss_pred ccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCC--ChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 556 QNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEG--CIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 556 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g--~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
.++++-+|+.+...|.++...+ ..+ =.| .+..+..++ +.+++++.-+-..+..++...+.
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~---~vK---w~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFG---IVK---WNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhh---hhh---cchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999998632 111 112 234444444 34677888887788877776543
No 248
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=88.85 E-value=15 Score=38.74 Aligned_cols=241 Identities=18% Similarity=0.204 Sum_probs=123.4
Q ss_pred hHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHH-hccCCCCCCh
Q 035507 336 VPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSN-LCRGKPRPLF 413 (684)
Q Consensus 336 i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~n-L~~~~~~~~~ 413 (684)
+.++++=+.+ ....+|..++.-|+.-+.+. .+|..+...|....++..+...++..+...++.++.. +++.......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 5566665553 45678888888888887755 5788999999999999999666555455555555544 4444343443
Q ss_pred hhhhchHHHHHHHhcCC-cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc---------CCCCcccHhHHHH
Q 035507 414 DQVRPALPALAQLIHSN-DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL---------GHPSPSVLTPALW 483 (684)
Q Consensus 414 ~~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL---------~~~~~~v~~~al~ 483 (684)
.........+..++... ...+..... . ..........+ .....+...+ .+.....+..|+.
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~--~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S--SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------h--hhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 33455566666666611 000000000 0 00000011110 1122222222 1233455667777
Q ss_pred HHHHHHcC-----C---------hhhHHHHHhcCChHHHHHHhcc----C------CCh-----hHHHHHHHHHHHHhcC
Q 035507 484 TVGNIVMG-----D---------DFQTQCIINHGAVPCLLALLIH----N------HKN-----SIKKEVSWIISNIACG 534 (684)
Q Consensus 484 ~L~nl~~~-----~---------~~~~~~~i~~g~l~~L~~lL~~----~------~~~-----~v~~~a~~~L~nl~~~ 534 (684)
++-.++.. + +...+.+...|++..++.++.. . .++ ..-..+..+|-|.+..
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 77776411 0 1123445566788888888752 1 011 1223456666676654
Q ss_pred ChHHHHHHHH--hCCHHHHHH----HhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 035507 535 NREQIQAVID--AGLIGPLVN----LLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVT 587 (684)
Q Consensus 535 ~~~~~~~l~~--~g~l~~Li~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 587 (684)
+.++-.++.. .+.++.+.. ........+...++..+.|++.. +++.+..+..
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s 310 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFAS 310 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhh
Confidence 4444444442 223332222 22222344456788888899874 4444444433
No 249
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.73 E-value=5.7 Score=39.66 Aligned_cols=146 Identities=17% Similarity=0.183 Sum_probs=102.8
Q ss_pred hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhH
Q 035507 417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT 496 (684)
Q Consensus 417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 496 (684)
...+...+..|.+.|++...+++..+..++ ....+.....+. .++..+++-+++....+...|+.+++.+.+......
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs-~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLS-EFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHH-hhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677788899999999999999998 444444333333 366777888888888999999999999987665444
Q ss_pred HHHHhcCChHHHHHHh-ccC--CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507 497 QCIINHGAVPCLLALL-IHN--HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA 573 (684)
Q Consensus 497 ~~~i~~g~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl 573 (684)
.. -++.++..| ... .+.-++..|-.+|..++.+-..+ .+++.|+..+....+.++..++.++.++
T Consensus 165 ~~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 165 DQ-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HH-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 43 233444433 222 14458888999998887643222 2577788888888999999888887777
Q ss_pred hcC
Q 035507 574 SSR 576 (684)
Q Consensus 574 ~~~ 576 (684)
...
T Consensus 233 v~r 235 (334)
T KOG2933|consen 233 VIR 235 (334)
T ss_pred cee
Confidence 653
No 250
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.26 E-value=12 Score=40.58 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=79.3
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
.+.+.-+++++.+.|..++..+++.++.+. ..-..++...-.|.+..|.+-+-+.. +.+|.+|+.+|+.+-..+....
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~-d~v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLS-DVVREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccCChH
Confidence 356778888888999999999999998754 33467778888888888887776666 7999999999998876322222
Q ss_pred HHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCC
Q 035507 328 KVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
..+ ...|..+++. |+.+||+.| |.||..++..
T Consensus 168 n~~-----~n~l~~~vqnDPS~EVRr~a---llni~vdnsT 200 (885)
T COG5218 168 NRI-----VNLLKDIVQNDPSDEVRRLA---LLNISVDNST 200 (885)
T ss_pred HHH-----HHHHHHHHhcCcHHHHHHHH---HHHeeeCCCc
Confidence 222 3456666655 788898765 5666655543
No 251
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.02 E-value=2.1 Score=34.88 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=63.2
Q ss_pred HHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507 463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV 542 (684)
Q Consensus 463 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 542 (684)
+...+..+.++.+.+|..++..|..+....+ ....-..+++..+...+.++ ++-|=-.|..+++.++...++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~---- 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE---- 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH----
Confidence 4566777889999999999999999998776 11112236778888889998 8889999999999998755442
Q ss_pred HHhCCHHHHHHHhcc
Q 035507 543 IDAGLIGPLVNLLQN 557 (684)
Q Consensus 543 ~~~g~l~~Li~ll~~ 557 (684)
+++.|++...+
T Consensus 78 ----vl~~L~~~y~~ 88 (92)
T PF10363_consen 78 ----VLPILLDEYAD 88 (92)
T ss_pred ----HHHHHHHHHhC
Confidence 45666655543
No 252
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=87.96 E-value=16 Score=38.54 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=87.2
Q ss_pred HHHhchHHHHHHhcCC-CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc----cC-CChhHHHHHHHHHHH
Q 035507 457 VIEAGVCGRLVELLGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI----HN-HKNSIKKEVSWIISN 530 (684)
Q Consensus 457 ~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~----~~-~~~~v~~~a~~~L~n 530 (684)
+.+..-.+.+-.-+.. +...-|.+|+..+..++.........++ ...+..++. ++ .+..-+..|...++.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 4444444555444443 3355677888899898865544333222 223333333 22 266777888888888
Q ss_pred HhcCCh-------H-----HHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 035507 531 IACGNR-------E-----QIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL 598 (684)
Q Consensus 531 l~~~~~-------~-----~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL 598 (684)
++.... . .+..++...++|-|. --.+..+-++..|++.+..+-..-++++... +++.+...|
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L 355 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL 355 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence 876321 1 345566677788776 2234478899999999999987666554333 788999999
Q ss_pred cCCChHHHHHHHHH
Q 035507 599 QCADPKIVTVCLEG 612 (684)
Q Consensus 599 ~~~~~~v~~~al~~ 612 (684)
.+++.-|...|..+
T Consensus 356 ~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 356 QSSSYVVHTYAAIA 369 (370)
T ss_dssp TSS-HHHHHHHHHH
T ss_pred CCCCcchhhhhhhh
Confidence 99888777666554
No 253
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=87.87 E-value=27 Score=37.40 Aligned_cols=231 Identities=11% Similarity=0.060 Sum_probs=125.5
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
.++...+..|+.++.++|+.-|+....+|.++-+..+..|..+.. .....+...+.......-...++..++.+..+-.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 344566889999999999999999999999998777776666543 2344555566555555666777888888888753
Q ss_pred CCC-hhhhhchHHHHHHHhcCCc-HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507 410 RPL-FDQVRPALPALAQLIHSND-EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487 (684)
Q Consensus 410 ~~~-~~~~~~~l~~L~~lL~~~d-~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 487 (684)
.+. .....-....++.+..... ...-.....++.... ..++..... ++..++..=-..+..-...-+.-+..
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~-~kdp~l~~~-----~i~~llk~WP~t~s~Kev~FL~el~~ 281 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFL-EKDPSLAEP-----VIKGLLKHWPKTNSQKEVLFLNELEE 281 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHH-HH-GGGHHH-----HHHHHHHHS-SS-HHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-HhCchhHHH-----HHHHHHHhCCCCCchhHHHHHHHHHH
Confidence 232 2222333344555555443 222233333343333 222222221 22223332222333333444555666
Q ss_pred HHcCCh-hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH---hCCHHHHHHHhcc----C-
Q 035507 488 IVMGDD-FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID---AGLIGPLVNLLQN----A- 558 (684)
Q Consensus 488 l~~~~~-~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~g~l~~Li~ll~~----~- 558 (684)
+....+ .....+ ...+...+...+.++ +..|.+.|.....|= .+..++. ..++|.+...+.. .
T Consensus 282 il~~~~~~~f~~i-~~~lf~~la~ci~S~-h~qVAErAl~~w~n~------~~~~li~~~~~~i~p~i~~~L~~~~~~HW 353 (409)
T PF01603_consen 282 ILEVLPPEEFQKI-MVPLFKRLAKCISSP-HFQVAERALYFWNNE------YFLSLISQNSRVILPIIFPALYRNSKNHW 353 (409)
T ss_dssp HHTT--HHHHHHH-HHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH------HHHHHHHCTHHHHHHHHHHHHSSTTSS-S
T ss_pred HHHhcCHHHHHHH-HHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH------HHHHHHHhChHHHHHHHHHHHHHHHHHHh
Confidence 655433 222222 224667777788888 888888777654432 1122222 1256666666543 1
Q ss_pred CHhHHHHHHHHHHHhhc
Q 035507 559 EFDIKEEAAWAISNASS 575 (684)
Q Consensus 559 ~~~v~~~a~~aL~nl~~ 575 (684)
+..++..|..++.-+..
T Consensus 354 n~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 354 NQTVRNLAQNVLKILME 370 (409)
T ss_dssp STTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 67788888888777765
No 254
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=87.58 E-value=7.4 Score=36.70 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=74.6
Q ss_pred cCCCCcccHhHHHHHHHHHHcCChhhHHHHHh----------------cCChHHHHHHhccC-----CChhHHHHHHHHH
Q 035507 470 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN----------------HGAVPCLLALLIHN-----HKNSIKKEVSWII 528 (684)
Q Consensus 470 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~----------------~g~l~~L~~lL~~~-----~~~~v~~~a~~~L 528 (684)
+.+++......++..|+|++.... ....+++ ...+..|+..+..+ ....--...+.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 344556677788889999987554 3333332 12466777766541 1334456778899
Q ss_pred HHHhcCChHHHHHHHHh--CC--HHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 035507 529 SNIACGNREQIQAVIDA--GL--IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVT 587 (684)
Q Consensus 529 ~nl~~~~~~~~~~l~~~--g~--l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 587 (684)
+|++.. ++.++.+.+. +. +..|+..+++.+..-|.-++.+|.|++- +.+.-..|..
T Consensus 83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF--d~~~H~~LL~ 142 (192)
T PF04063_consen 83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF--DTDSHEWLLS 142 (192)
T ss_pred HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc--cHhHHHHhcC
Confidence 999875 5777777743 33 7788888888877777788899999997 3333344443
No 255
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.47 E-value=11 Score=42.64 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=81.8
Q ss_pred chHHHHHHHhcC----CcHHHHHHHHHHHHhhccC--CChHHHHHHHHhchHHHHHHhc----CCCCcccHhHHHHHHHH
Q 035507 418 PALPALAQLIHS----NDEQVLTDACWALFGLSGD--RNNDKIQAVIEAGVCGRLVELL----GHPSPSVLTPALWTVGN 487 (684)
Q Consensus 418 ~~l~~L~~lL~~----~d~~v~~~al~~L~~L~~~--~~~~~~~~~~~~g~l~~L~~lL----~~~~~~v~~~al~~L~n 487 (684)
..+..+..++.+ ..+.+...++-+++.+... .........+...+++.+...| ...+...+..++++|||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 445566666664 3456677777777766510 1111100111123555555554 33455567789999999
Q ss_pred HHcCChhhHHHHHhcCChHHHHHHhc-cC-CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHH
Q 035507 488 IVMGDDFQTQCIINHGAVPCLLALLI-HN-HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIK 563 (684)
Q Consensus 488 l~~~~~~~~~~~i~~g~l~~L~~lL~-~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~ 563 (684)
+.... .++.+...+. .. .+..+|..|.|+|..++...+... -+.++.++.+. +.++|
T Consensus 473 ~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 473 AGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVR 533 (574)
T ss_pred cCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHH
Confidence 86533 3444555554 11 256899999999999986555543 34556666553 78899
Q ss_pred HHHHHHHHHh
Q 035507 564 EEAAWAISNA 573 (684)
Q Consensus 564 ~~a~~aL~nl 573 (684)
-.|..++...
T Consensus 534 iaA~~~lm~t 543 (574)
T smart00638 534 MAAVLVLMET 543 (574)
T ss_pred HHHHHHHHhc
Confidence 8888887655
No 256
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=87.20 E-value=22 Score=34.91 Aligned_cols=131 Identities=13% Similarity=0.122 Sum_probs=70.1
Q ss_pred HhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCC-ChhHHHHHHHHHHHHhcCChH
Q 035507 459 EAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KNSIKKEVSWIISNIACGNRE 537 (684)
Q Consensus 459 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~ 537 (684)
+...++.++++++.++.. .-..+|...+..-...-+.+-.|-++.|..++.++. +.-+|..|+.++..++...+.
T Consensus 71 e~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 446789999999765541 112233322211111112223456777778887663 557899999999999987666
Q ss_pred HHHHHHHhCCHHHHHHH-hccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHH
Q 035507 538 QIQAVIDAGLIGPLVNL-LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLC 595 (684)
Q Consensus 538 ~~~~l~~~g~l~~Li~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~ 595 (684)
.+..+++ .+..++.. +...+..+-..-+..++.+-...--..++.+.+.|.++..+
T Consensus 147 ~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 147 SREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred CHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence 6666665 34444444 43333332222223333332211223455556677765543
No 257
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=87.19 E-value=31 Score=33.74 Aligned_cols=138 Identities=20% Similarity=0.106 Sum_probs=89.6
Q ss_pred HHHHH-HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHH
Q 035507 421 PALAQ-LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCI 499 (684)
Q Consensus 421 ~~L~~-lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~ 499 (684)
|.+.. +-+..+++.+...+.+|..++ ...+.... -++..+..+...+....+.-+.+.+..+...++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~-~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLA-CHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHh-ccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 44333 556778999999999999999 44312222 245667777777766666778888888877666332
Q ss_pred HhcCChHHHHHH---------hccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh-ccCCHhHHHHHHHH
Q 035507 500 INHGAVPCLLAL---------LIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL-QNAEFDIKEEAAWA 569 (684)
Q Consensus 500 i~~g~l~~L~~l---------L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll-~~~~~~v~~~a~~a 569 (684)
+.+..++.. .......+.....+.++..++...++.- ..+++.+..++ +..++.++..|..+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 222222222 0111133455555677888887666622 23678888888 77788899999999
Q ss_pred HHHhhc
Q 035507 570 ISNASS 575 (684)
Q Consensus 570 L~nl~~ 575 (684)
+..++.
T Consensus 146 l~~Lc~ 151 (234)
T PF12530_consen 146 LAPLCE 151 (234)
T ss_pred HHHHHH
Confidence 999985
No 258
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.01 E-value=7 Score=35.94 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=77.8
Q ss_pred chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc--CChHHHHHHhccCCChhHHHHHHHHHHHHhc---CC
Q 035507 461 GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH--GAVPCLLALLIHNHKNSIKKEVSWIISNIAC---GN 535 (684)
Q Consensus 461 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~--g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~ 535 (684)
....++..+|+++++.-|-.++..+.-.+..++. +.+.++ ..+..++++|+.+++..+++.|+.++..|.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4667889999999999999999999888876532 223232 3678889999887677889999999998864 45
Q ss_pred hHHHHHHHHh---CCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 536 REQIQAVIDA---GLIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 536 ~~~~~~l~~~---g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
++....+... ++++.++.+++. ......++.++..+..
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 5544444432 345555555543 5666777788877775
No 259
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.96 E-value=31 Score=42.07 Aligned_cols=148 Identities=14% Similarity=0.083 Sum_probs=93.3
Q ss_pred chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHH
Q 035507 461 GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQ 540 (684)
Q Consensus 461 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 540 (684)
|++|.|..-|.+.+..+|..|...+|.+......+.. --.......++.-+.+. +..||.++.....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 7899999999999999999999999999876654332 00112444555555666 889999999999988776655443
Q ss_pred HHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 541 AVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 541 ~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
... ..-.+.....+.+..++..++...+... ...-.++.. .+..+.+.+.+....|+..|+..|..+.+.
T Consensus 337 ~~~---~~~~l~~~~~D~~~rir~~v~i~~~~v~-----~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALRERDLDEDVRVRTQVVIVACDVM-----KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHHhhcCChhhhheeeEEEEEeehh-----HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 222 2222222222223333332222211111 111222333 677777788888999999999999998883
No 260
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=86.95 E-value=6.4 Score=35.99 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=28.0
Q ss_pred ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHH
Q 035507 504 AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQ 540 (684)
Q Consensus 504 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 540 (684)
.++.|..+|..+.+..+|+++..+++.|.+-+|...+
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 5677788887776789999999999999875544333
No 261
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=86.81 E-value=25 Score=39.73 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=105.1
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC----CChHHHHHHHHHHHHhhC----
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS----PSDDVREQAVWALGNVAA---- 363 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~a~~~L~nLa~---- 363 (684)
.+..+.+.+.+..-+. .+|+.++..+...-..... ..+..+..++.+ +.+.++..|+.++++++.
T Consensus 358 a~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~~Pt~-----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 358 ALKFIKQWIKNKKITP--LEAAQLLAVLPHTARYPTE-----EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhhcCCH-----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence 5566667776654221 2333333333331111112 235666677765 456788899999998873
Q ss_pred CCCCCchhHhhcCCHHHHHHHhcc---CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc---CCcHHHHHH
Q 035507 364 DSSGCRDLVLSEGALIPLLAQLNE---HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH---SNDEQVLTD 437 (684)
Q Consensus 364 ~~~~~r~~i~~~g~l~~Ll~~L~~---~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~ 437 (684)
+.+.+... .....++.+...|.. ..+..-+..++.+|+|+-.. ..++.+...+. .....++..
T Consensus 431 ~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~ 499 (574)
T smart00638 431 NTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLA 499 (574)
T ss_pred CCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHH
Confidence 22221111 112245555555532 23444556677788877543 34555555555 234679999
Q ss_pred HHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC--CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC
Q 035507 438 ACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN 515 (684)
Q Consensus 438 al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~ 515 (684)
|+++|..++ ...+.. +-+.++.++.+ .++++|..|+..+.. +..+ . ..+..+...+...
T Consensus 500 Av~Alr~~a-~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~--t~P~-~-------~~l~~ia~~l~~E 560 (574)
T smart00638 500 AILALRNLA-KRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLME--TKPS-V-------ALLQRIAELLNKE 560 (574)
T ss_pred HHHHHHHHH-HhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCC-H-------HHHHHHHHHHhhc
Confidence 999999887 433332 23456666544 456677777766633 2222 1 1345566666555
Q ss_pred CChhHHHH
Q 035507 516 HKNSIKKE 523 (684)
Q Consensus 516 ~~~~v~~~ 523 (684)
++..|+..
T Consensus 561 ~~~QV~sf 568 (574)
T smart00638 561 PNLQVASF 568 (574)
T ss_pred CcHHHHHH
Confidence 35555443
No 262
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=86.70 E-value=0.33 Score=59.60 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=56.3
Q ss_pred HHHHHHhhhCCCCCcEEEecCcccCCCcccccccccccccccc----ceee--c--ccccccchhhhh-hccccccCCcc
Q 035507 77 FVNELVKLQGSSQLKHLYISGSRLALNPEESERPEKLSYDIPS----NEII--L--EDDISIAKSLFI-EKKLTLSYLKS 147 (684)
Q Consensus 77 ~l~~l~~~~~~~~l~~l~~~~~~~~l~~~~~~~c~~le~ii~~----~~~~--~--~~~~~~~~~~~~-l~~l~l~~Lp~ 147 (684)
+|+.|+ ...|..|..++-....+.|+.+.+..|.+++.+-.. .... . -+.+|..-.-+. |++|.|.++++
T Consensus 803 ~L~~L~-Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 803 KLEHLE-IENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred CCCEEE-CCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCC
Confidence 344444 333334444433333456777888888777653221 0000 0 011222222234 78888888888
Q ss_pred ccccccCccccccCCccceeeccCcccccc
Q 035507 148 LTSFCSGSCAIKFPSLEVLVVDDCHNMMIF 177 (684)
Q Consensus 148 L~~~~~~~~~~~fp~L~~~~v~~Cp~l~~~ 177 (684)
|+++.... ..+++|+.+.+.+|++|+.+
T Consensus 882 L~~l~~~~--~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 882 LQRVSLNI--SKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cCccCccc--ccccCCCeeecCCCcccccc
Confidence 88876643 56788888899999988744
No 263
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=86.44 E-value=7.3 Score=43.45 Aligned_cols=148 Identities=15% Similarity=0.168 Sum_probs=95.8
Q ss_pred HhchHHHHHHhcCCCCcccHhHHHHHHHHH---HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC
Q 035507 459 EAGVCGRLVELLGHPSPSVLTPALWTVGNI---VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN 535 (684)
Q Consensus 459 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl---~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 535 (684)
...++|.|..++...++ ....+.++-++ ....+ ..-+...++|.|..-+++. +..++..+...+..++..-
T Consensus 347 ~~~~~p~l~pi~~~~~~--~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~i 420 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASDP--KQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESI 420 (700)
T ss_pred hhhhhHHHHHHhccCCc--ccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhc
Confidence 33567788887764221 22222333333 22221 1122346888998888888 9999999999999887632
Q ss_pred hHHHHHHHHhCCHHHHHHHh-ccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHH
Q 035507 536 REQIQAVIDAGLIGPLVNLL-QNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614 (684)
Q Consensus 536 ~~~~~~l~~~g~l~~Li~ll-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 614 (684)
+ -..+..-++|.+..+. ...+..++..++-|+..++.. .+...-...+.++....+..+|.++...+.+..
T Consensus 421 D---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~ 492 (700)
T KOG2137|consen 421 D---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYE 492 (700)
T ss_pred c---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 2 2234555788888874 345888999999999988832 222122224667777778889999999888888
Q ss_pred HHHhcc
Q 035507 615 NILKVG 620 (684)
Q Consensus 615 ~il~~~ 620 (684)
++.-..
T Consensus 493 ~l~~~~ 498 (700)
T KOG2137|consen 493 ALALII 498 (700)
T ss_pred HHHhhc
Confidence 776554
No 264
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=86.42 E-value=50 Score=35.27 Aligned_cols=233 Identities=18% Similarity=0.181 Sum_probs=130.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCCCC---CCchhHhhcCCHHHHHHHhc------cCCchHHHHHHHHHHHHhccCC
Q 035507 338 IFVKLLASPSDDVREQAVWALGNVAADSS---GCRDLVLSEGALIPLLAQLN------EHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 338 ~Li~lL~~~~~~v~~~a~~~L~nLa~~~~---~~r~~i~~~g~l~~Ll~~L~------~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
.+..++...+.+-+-.|+.....++.... ..++.+.+.-+.+.+-.++. ..++.-.+..++..|..+|+..
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35556666666667677777777775442 13445555555555555553 2234445667888899999987
Q ss_pred CCCChhhhhchHHHHHHHhcCC-cHH------HHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHh-H
Q 035507 409 PRPLFDQVRPALPALAQLIHSN-DEQ------VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT-P 480 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~-d~~------v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~-~ 480 (684)
.-.....+-.-+|.+...+... |++ +..++..+|..++ . .+...+.++..|.++.+.++-.-++...-. -
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va-~-~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA-T-AEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh-c-CCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 5555555567788888888632 333 7788889998888 4 456667789999999999886554433322 2
Q ss_pred HHHHHHHHHcCCh---hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHH--HHHH----HHhCCHHHH
Q 035507 481 ALWTVGNIVMGDD---FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQ--IQAV----IDAGLIGPL 551 (684)
Q Consensus 481 al~~L~nl~~~~~---~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~--~~~l----~~~g~l~~L 551 (684)
|+.++--.+.+.+ +....+.. ++..+..-+... +...+-+.|..|+.+....+.. ...+ .-......+
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~ 249 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGV 249 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHH
Confidence 3333322222211 11111111 233333333344 5567888999998765432210 0111 111123344
Q ss_pred HHHhccC-CHhHHHHHHHHHHHhhc
Q 035507 552 VNLLQNA-EFDIKEEAAWAISNASS 575 (684)
Q Consensus 552 i~ll~~~-~~~v~~~a~~aL~nl~~ 575 (684)
..+|++. .+.-|..|.....|+..
T Consensus 250 ~~IL~~kv~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 250 VAILQNKVAPSQRLPALILAANMMH 274 (698)
T ss_pred HHHHhcccCchhcChHHHHHHHHHH
Confidence 5566655 45555556665555543
No 265
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.85 E-value=28 Score=39.73 Aligned_cols=253 Identities=15% Similarity=0.109 Sum_probs=153.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
....+=++++++....|-+++..+-++....+.+ .++.+ ..=.|......++ ..+|...+++...--. +...
T Consensus 25 ~~~~ldkGlr~~~t~eqpeavvr~~RLFek~Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~g~----hln~ 96 (970)
T KOG1988|consen 25 VLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQSGK----HLNK 96 (970)
T ss_pred HHHHHhhcccccccccchHHHHHHHHHHhhCCch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhccc----cchh
Confidence 4556777888888888888888888877766533 33333 3335666667777 5788877777763222 2222
Q ss_pred HH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 330 VI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 330 i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
+. ....+........+.|+.-|+.++..++.++.--| +.+..+.++..-..+.+.--.+.++.+...++.-.
T Consensus 97 v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~s 169 (970)
T KOG1988|consen 97 VLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQS 169 (970)
T ss_pred hhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhh
Confidence 32 22344444455667899999999999999864433 34455666655444444444566666666665543
Q ss_pred CCCChhhhhchHHHHHHHhcCCc--HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLIHSND--EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWTV 485 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L 485 (684)
. ....++...+..++...+ +...-.++.+++.+. .. +.....+......++.. +..+-...-+.++
T Consensus 170 k----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~-c~------at~A~ra~~l~m~lv~~tps~d~~v~fL~st 238 (970)
T KOG1988|consen 170 K----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMH-CH------ATGASRAFGLCMSLVSGTPSIDRVVAFLYST 238 (970)
T ss_pred h----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhc-ch------hhhhHHHHHHHHHHhcCCCcccceeeehhhh
Confidence 1 122334445555555443 455667788888887 21 12223355666666643 4445555667777
Q ss_pred HHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 486 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 486 ~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
.+++...-. .-.+-++.+.+.+..+....++..+.|-+.+++.
T Consensus 239 T~Lasrs~~-----ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 239 TNLASRSLV-----AISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHHH-----HhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 777653321 1224566778888755466677788888887764
No 266
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.32 E-value=74 Score=36.28 Aligned_cols=321 Identities=13% Similarity=0.113 Sum_probs=168.0
Q ss_pred cHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCcHHHH--HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 035507 250 ILPMMVAGVWSD-DNNLQLEATTQFQKLLSIESMPIEEV--IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSEN 326 (684)
Q Consensus 250 ~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~~~~~~i--i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 326 (684)
....+.++++.. |.-+++.++++++-+...-+=..+.+ +-..+...+.+++..-..-+-+...+..|+-+.....+.
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 456667777765 67788888888887765543111111 112233344445543222345555666666665522222
Q ss_pred HHHHHhcCChHHHHHhc---CCCChHHHHHHHHHHHHhhC----CCCCCchhHhhcCCHHHHHHHhccCCch---HHHHH
Q 035507 327 TKVVIEHDAVPIFVKLL---ASPSDDVREQAVWALGNVAA----DSSGCRDLVLSEGALIPLLAQLNEHTEL---SMLRI 396 (684)
Q Consensus 327 ~~~i~~~g~i~~Li~lL---~~~~~~v~~~a~~~L~nLa~----~~~~~r~~i~~~g~l~~Ll~~L~~~~~~---~v~~~ 396 (684)
..-.. +-+-.++..| ..+.+-+|.+.+.+|.|+.. .++.+. ..+-+++.+-.+..++ -+.+.
T Consensus 607 I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~L~ED 678 (978)
T KOG1993|consen 607 IAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVYLLED 678 (978)
T ss_pred hhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceeehhhh
Confidence 21111 1111222222 12556677788888888862 222221 1234555554322222 23333
Q ss_pred HHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHH-HhhccCCChHHHHHHHHhchHHHHHHhcCCCCc
Q 035507 397 ATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWAL-FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSP 475 (684)
Q Consensus 397 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L-~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~ 475 (684)
+...-.....+. ..-....-+++|.+...+....+. ..-++.++ +|+. -.+.. .-.....|++..+..++.+-..
T Consensus 679 gmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~-L~t~l~Ii~sYil-Ld~~~-fl~~y~~~i~k~~~~~l~dvr~ 754 (978)
T KOG1993|consen 679 GMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTEN-LPTVLMIISSYIL-LDNTV-FLNDYAFGIFKKLNDLLDDVRN 754 (978)
T ss_pred HHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHh-hccHH-HHHHHHHHHHHHHHHHHHHhhH
Confidence 332222222222 122223356667777666644333 33333333 3333 22222 2223344788888888877666
Q ss_pred ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh-ccCCChhHHHHHHHHHHHHhcCChHHHHHHHHh-C-------
Q 035507 476 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL-IHNHKNSIKKEVSWIISNIACGNREQIQAVIDA-G------- 546 (684)
Q Consensus 476 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-g------- 546 (684)
+-....+.++..+...++ ........++++.+..-+ .....+.+-..-..+++.+.-.+++....+.+. .
T Consensus 755 egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~ 833 (978)
T KOG1993|consen 755 EGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIA 833 (978)
T ss_pred HHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHH
Confidence 666677777777776665 444455668888777655 222256677777777777776666666555532 1
Q ss_pred -CHHHHHHHhcc-CCHhHHHHHHHHHHHhhcCCCHHHHH
Q 035507 547 -LIGPLVNLLQN-AEFDIKEEAAWAISNASSRGTHDQIK 583 (684)
Q Consensus 547 -~l~~Li~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~ 583 (684)
++...+.+... .+++-|+--+-|+..+...+++....
T Consensus 834 ~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila 872 (978)
T KOG1993|consen 834 MLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILA 872 (978)
T ss_pred HHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHH
Confidence 22222233332 37888888888888888876655433
No 267
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.05 E-value=6.3 Score=36.24 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=77.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcC--CHHHHHHhhcCCCCHHHHHHHHHHHHHHhc---CCc
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESG--VVPRFVEFLMREDYPQLQFQAAWALTNIAS---GTS 324 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g--~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~---~~~ 324 (684)
-+..+.+.++|+++..+..++..+.......+ .+.+.+.| -+..++..|+.++.+.+...|+.+|..|.. +.+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45677888889999999999888877766542 34443433 577888899887767888888888887765 456
Q ss_pred hhHHHHHhc---CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507 325 ENTKVVIEH---DAVPIFVKLLASPSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 325 ~~~~~i~~~---g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
+..+.+.-. ++++.++.+++. ....+.++.+|..+....|.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 655555433 234444444443 56777888888888754443
No 268
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=84.75 E-value=6.1 Score=37.07 Aligned_cols=82 Identities=12% Similarity=0.117 Sum_probs=61.1
Q ss_pred CChHHHHHHHHhchHHHHHHhcCC---------CCcccHhHHHHHHHHHHcCChhhHHHHH-hcCChHHHHHHhccCCCh
Q 035507 449 RNNDKIQAVIEAGVCGRLVELLGH---------PSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALLIHNHKN 518 (684)
Q Consensus 449 ~~~~~~~~~~~~g~l~~L~~lL~~---------~~~~v~~~al~~L~nl~~~~~~~~~~~i-~~g~l~~L~~lL~~~~~~ 518 (684)
.+....+.+++.|++..|+.+|.. .+......+++|+..+..... ....++ ..+.+..|...|.++ +.
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s~-~~ 172 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDSP-NI 172 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--TT-SH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCCC-CH
Confidence 455778888899999999988743 234567788999988876554 555555 468899999999988 99
Q ss_pred hHHHHHHHHHHHHh
Q 035507 519 SIKKEVSWIISNIA 532 (684)
Q Consensus 519 ~v~~~a~~~L~nl~ 532 (684)
.+|..|+..|+.+|
T Consensus 173 ~~r~~~leiL~~lc 186 (187)
T PF06371_consen 173 KTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
No 269
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.57 E-value=80 Score=36.03 Aligned_cols=321 Identities=16% Similarity=0.101 Sum_probs=163.4
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCC-ChHHHHHHHHHHHHhhCCCC
Q 035507 288 IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP-SDDVREQAVWALGNVAADSS 366 (684)
Q Consensus 288 i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~a~~~L~nLa~~~~ 366 (684)
.....+|-+- ..+++..-+|...+|.++...+ .++.... ..-+-..++.+++.. |..++-.++.++.-...|-.
T Consensus 485 l~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvs--vq~~~e~-k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n 559 (978)
T KOG1993|consen 485 LQEALLPELA--NDHGNSRIIRRRVAWILGQWVS--VQQKLEL-KPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN 559 (978)
T ss_pred HHHhhCHHhh--hcccchhHHHHHHHHHHhhhhh--eechHhH-HHHHHHHHHHhcCccccceeehHHHHHHHHhhhhcc
Confidence 3344455444 2334445688999999999887 1222111 112345678888875 66677788888877765542
Q ss_pred CCchhHhh--cCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc--CCcHHHHHHHHHHH
Q 035507 367 GCRDLVLS--EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH--SNDEQVLTDACWAL 442 (684)
Q Consensus 367 ~~r~~i~~--~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L 442 (684)
-..+.+.. .+....+..++..-...+.+...+.+++.+..............+++.+-.+=. .+.+-.+-+.+.++
T Consensus 560 F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L 639 (978)
T KOG1993|consen 560 FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATL 639 (978)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHH
Confidence 22222211 122334445554444556666677777766554311111111122222111111 23455566667777
Q ss_pred HhhccCCChHHHHHHHHhchHHHHHHhcCC-CCc---ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCCh
Q 035507 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSP---SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKN 518 (684)
Q Consensus 443 ~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~---~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~ 518 (684)
.++. .+-..... .. ..++-.++++-.+ .+| -..+.++..-+......+.....+. +.+|.+...+... ..
T Consensus 640 ~~lV-~alg~qS~-~~-~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~s-te 713 (978)
T KOG1993|consen 640 RNLV-NALGAQSF-EF-YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQS-TE 713 (978)
T ss_pred HHHH-HHhccCCc-cc-hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhh-hh
Confidence 7776 21111100 00 0122223333222 222 2233333332222222232233333 3778888888655 33
Q ss_pred hHHHHHHHHHHHH-hcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh
Q 035507 519 SIKKEVSWIISNI-ACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDL 597 (684)
Q Consensus 519 ~v~~~a~~~L~nl-~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~l 597 (684)
. -..+..++..- .-.++...+ -...|+...+.+++.+-..+-....+..+..+.. ..+....+...++++.+..-
T Consensus 714 ~-L~t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~--t~~il~~~~~~~~L~~lf~~ 789 (978)
T KOG1993|consen 714 N-LPTVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIK--TNPILGSLLFSPLLSRLFLS 789 (978)
T ss_pred h-HHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--hhHHHHhhhcchhhHHHHHH
Confidence 3 33444444432 223333222 2335688888888877666666667777777766 23344445566777776664
Q ss_pred c--cCCChHHHHHHHHHHHHHHhccccc
Q 035507 598 L--QCADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 598 L--~~~~~~v~~~al~~L~~il~~~~~~ 623 (684)
. +.+.|.+....+.++.++.-.++..
T Consensus 790 I~~~~~yP~~~~~yl~vvaRi~l~n~~~ 817 (978)
T KOG1993|consen 790 IAENDKYPYVMGEYLLVVARISLRNPSL 817 (978)
T ss_pred HHhCCCCchhHHHHHHHHHHHHhcChHH
Confidence 4 4566777888888888877665543
No 270
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.52 E-value=7.7 Score=38.91 Aligned_cols=146 Identities=21% Similarity=0.195 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcC--ChHHHHHhcC----CCChHHHHHHHHHHHHhhCCCCCCchhHhhcC--CH
Q 035507 307 QLQFQAAWALTNIASGTSENTKVVIEHD--AVPIFVKLLA----SPSDDVREQAVWALGNVAADSSGCRDLVLSEG--AL 378 (684)
Q Consensus 307 ~v~~~A~~~L~~l~~~~~~~~~~i~~~g--~i~~Li~lL~----~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g--~l 378 (684)
+-+.-++..++-++. ++.....+...+ ....+..++. +..+..+-.++++++|+...... +..+.... .+
T Consensus 78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG-RQLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-HHHHHhcccchH
Confidence 446667777766665 444444444332 2333333332 25677888899999999887654 55555432 34
Q ss_pred HHHHHHhccCC---chHHHHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHhc--CCcHHHHHHHHHHHHhhccCCCh
Q 035507 379 IPLLAQLNEHT---ELSMLRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLIH--SNDEQVLTDACWALFGLSGDRNN 451 (684)
Q Consensus 379 ~~Ll~~L~~~~---~~~v~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~~ 451 (684)
...+..+.... +..++..++..+.|++-.. ...........+..+.+.+. ..|++....++-+++++. ..+.
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~-~~~~ 234 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLL-SSSD 234 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH-CCSH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHh-ccCh
Confidence 44444443333 6788888888888887654 11122233445666666433 268999999999999999 6555
Q ss_pred HHHH
Q 035507 452 DKIQ 455 (684)
Q Consensus 452 ~~~~ 455 (684)
...+
T Consensus 235 ~~~~ 238 (268)
T PF08324_consen 235 SAKQ 238 (268)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4444
No 271
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.39 E-value=14 Score=42.22 Aligned_cols=169 Identities=14% Similarity=0.079 Sum_probs=92.7
Q ss_pred ChHHHHHhcCCCChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHHHhcc---CCchHHHHHHHHHHHHhccCC-C
Q 035507 335 AVPIFVKLLASPSDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLAQLNE---HTELSMLRIATTTLSNLCRGK-P 409 (684)
Q Consensus 335 ~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~~L~~---~~~~~v~~~a~~~L~nL~~~~-~ 409 (684)
++..+.+++.+....-. .|...|..+.... ....+ .+..+..++.. ..+..+...|+-+++.+.... .
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 46666677666433222 2444455544332 11122 24444445432 234456666666665554332 1
Q ss_pred ---------CCChhhhhchHHHHHHHhc----CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC---
Q 035507 410 ---------RPLFDQVRPALPALAQLIH----SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP--- 473 (684)
Q Consensus 410 ---------~~~~~~~~~~l~~L~~lL~----~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~--- 473 (684)
..........++.+...+. ..|.+.+..++.+|+|+. . ...++.+..++...
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g-~-----------~~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG-H-----------PESIPVLLPYIEGKEEV 536 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------------GGGHHHHHTTSTTSS-S
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC-C-----------chhhHHHHhHhhhcccc
Confidence 1122233455555555544 567788899999999988 2 24678888888766
Q ss_pred CcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHH
Q 035507 474 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISN 530 (684)
Q Consensus 474 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~n 530 (684)
...+|..|++++..++...+... .+.++.++.+. .+.++|..|..+|..
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 56788999999998877666433 35666666543 367888888766654
No 272
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=84.13 E-value=42 Score=37.31 Aligned_cols=286 Identities=16% Similarity=0.192 Sum_probs=143.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.+..+=+.+.+++..++--|+..+.-..++.....+ .++..|...+.+++ ..++..|+-.|+-.-+++ +++.
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~d-----palALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e~ 487 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECD-----PALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QREE 487 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeeccccccccC-----HHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chHH
Confidence 455566666666666665555544433332221111 12345566666666 577877777776554432 3333
Q ss_pred HHhcCChHHHHHhcCCC--ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 330 VIEHDAVPIFVKLLASP--SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~--~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
+.. .|..++.+. ..++...|..+|+.+.-.+.+ ..+ ..-.++.++..-.........+...-.|..+-.+
T Consensus 488 V~~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llflg 559 (878)
T KOG2005|consen 488 VLE-----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFLG 559 (878)
T ss_pred HHH-----HHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhc
Confidence 321 445556553 355777777788877644322 111 1112333333221112223334333344444333
Q ss_pred CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHH---HhhccCCChHHHHHHHHhchHHHHHHhcCCCC---cccHhHH
Q 035507 408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWAL---FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS---PSVLTPA 481 (684)
Q Consensus 408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L---~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~v~~~a 481 (684)
.. ..+...+.-+..-...+...+-..+ .|.. .++.-.++. ..+..+-.... ..-+..|
T Consensus 560 kq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaG-TGnvl~Iq~-------q~ll~~cgE~~~~~e~~~~~a 623 (878)
T KOG2005|consen 560 KQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAG-TGNVLKIQS-------QLLLSFCGEHDADLESEQELA 623 (878)
T ss_pred cc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccc-cCceEEech-------hhhhhhcCCCccchhhhccch
Confidence 21 1111222222111111111111111 1111 111111110 12222222211 1223356
Q ss_pred HHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507 482 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD 561 (684)
Q Consensus 482 l~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~ 561 (684)
+--++-++.+.+-..+.. +..+-.+|..+ ++.+|+..=-+++-++..+|.. +++..|-+...+++.+
T Consensus 624 vLgiAliAMgeeig~eM~-----lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~e 690 (878)
T KOG2005|consen 624 VLGIALIAMGEEIGSEMV-----LRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLE 690 (878)
T ss_pred hhhhhhhhhhhhhhhHHH-----HHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchH
Confidence 666666777666555443 45677788888 8999999989999888877542 4678888888888999
Q ss_pred HHHHHHHHHHHhhcCCCHH
Q 035507 562 IKEEAAWAISNASSRGTHD 580 (684)
Q Consensus 562 v~~~a~~aL~nl~~~~~~~ 580 (684)
+.-.|..+++-+-.+.+..
T Consensus 691 va~naIfamGLiGAGTnNA 709 (878)
T KOG2005|consen 691 VAMNAIFAMGLIGAGTNNA 709 (878)
T ss_pred HHHHHHHHhccccCCcchH
Confidence 9999998888776554433
No 273
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.38 E-value=2.4 Score=40.77 Aligned_cols=84 Identities=15% Similarity=0.202 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHc-------CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH-hcC
Q 035507 263 NNLQLEATTQFQKLLSIESMPIEEVIES-------GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI-EHD 334 (684)
Q Consensus 263 ~~~~~~a~~~L~~l~s~~~~~~~~ii~~-------g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~-~~g 334 (684)
..-|..|+.+|.|+.-.+ .+.+.++.. .++..|++++....++..|+-|+-.|.+++.+++.....+. +.+
T Consensus 138 lSPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 456888999999965433 344444333 35667778887776689999999999999998777765554 678
Q ss_pred ChHHHHHhcCCCC
Q 035507 335 AVPIFVKLLASPS 347 (684)
Q Consensus 335 ~i~~Li~lL~~~~ 347 (684)
.|..|+.++.+..
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999987643
No 274
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=82.94 E-value=8.4 Score=36.53 Aligned_cols=107 Identities=10% Similarity=0.226 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcC----CCCHHHHHHHHHHHHHHhc-CCchhHHHHHhcCC
Q 035507 261 DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMR----EDYPQLQFQAAWALTNIAS-GTSENTKVVIEHDA 335 (684)
Q Consensus 261 ~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~----~~~~~v~~~A~~~L~~l~~-~~~~~~~~i~~~g~ 335 (684)
+...-+...+..+-..+..+++....+.++.+--.+-.+|.. ...+.+|..++.+++.+.. ++......+....+
T Consensus 111 ~~~snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTei 190 (315)
T COG5209 111 ERESNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEI 190 (315)
T ss_pred chhhhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhH
Confidence 344445544444444444444455555666543333444432 2235788899999999998 44555666778899
Q ss_pred hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507 336 VPIFVKLLASPSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
+|..++++..++..-+.-|+.+++.+.+++..
T Consensus 191 vPLcLrIme~gSElSktvaifI~qkil~dDvG 222 (315)
T COG5209 191 VPLCLRIMELGSELSKTVAIFIFQKILGDDVG 222 (315)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccchh
Confidence 99999999998888888888899888877654
No 275
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=82.82 E-value=51 Score=32.45 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=53.8
Q ss_pred cCChHHHHHhcCCCCh--------HHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC-chHHHHHHHHHHHH
Q 035507 333 HDAVPIFVKLLASPSD--------DVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT-ELSMLRIATTTLSN 403 (684)
Q Consensus 333 ~g~i~~Li~lL~~~~~--------~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~-~~~v~~~a~~~L~n 403 (684)
..+.+.++.+++.++. .+.+....++..++. |-+.+|..++.+.. +.-++..|+.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 4678999999976543 233334444444433 34667777774433 56678889999999
Q ss_pred hccCCCCCChhhhhchHHHHHHHhcCCcHH
Q 035507 404 LCRGKPRPLFDQVRPALPALAQLIHSNDEQ 433 (684)
Q Consensus 404 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~ 433 (684)
+....+......+.-.-..+-..+..++..
T Consensus 140 l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 140 LVHEGPISREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhccCchH
Confidence 998876555544444444444445444343
No 276
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=82.25 E-value=22 Score=40.66 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=108.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.+..++..|.|.|..+...+-..+...+....++. ++..|+.+--+... ..|+.+|..+-. |..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K-- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPW-------LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK-- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHH-------HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH--
Confidence 57889999999999998888888888777654331 35566666433331 234556654432 2111
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
..+..|=..+.. +.-|-.++..|+.+....|..-..|.+...+..|+.+|..+.+..+...|+.+|.-|.-.-|
T Consensus 70 ----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 70 ----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred ----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 223444445544 45677899999999988877777888889999999999888899998889888888776555
Q ss_pred CCChhhhhchHHHHHHHh
Q 035507 410 RPLFDQVRPALPALAQLI 427 (684)
Q Consensus 410 ~~~~~~~~~~l~~L~~lL 427 (684)
.........++.+...++
T Consensus 144 ~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 144 SSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 444445555666655665
No 277
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.79 E-value=1.6e+02 Score=37.37 Aligned_cols=232 Identities=17% Similarity=0.091 Sum_probs=122.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCch
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRD 370 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~ 370 (684)
....++..|..++ |..+..++.+++.++..-++.. . -++....+++-+.+ .++-.|..-..++|.+-++....-.
T Consensus 877 ~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~~-f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 877 ALTLIVNSLINPN-PKLRCAAAEALARLAQVVGSAP-F--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccccc-h--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 3444555555666 7888888888888886221111 0 11234455555555 5566666666777777544322111
Q ss_pred hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCc---HHHHH-----------
Q 035507 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSND---EQVLT----------- 436 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d---~~v~~----------- 436 (684)
.-.....+..++.+-.++.++.++..++.++..+...........+...+..+..++.+.. .++..
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 1111223556666665666779999999999888877633334445555555556554321 11111
Q ss_pred --HHHHHHHhhccCCChH-HHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc
Q 035507 437 --DACWALFGLSGDRNND-KIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI 513 (684)
Q Consensus 437 --~al~~L~~L~~~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~ 513 (684)
....+++.=. ..+.. ..-.......+-...-++.++++.++..|..++-++....+.+... .-.++.+..++.
T Consensus 1033 ~~alittlgpeL-~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPEL-GPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHHhccccc-CCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhc
Confidence 1222222222 11111 1111222233444455567778889999999999887655532211 124556666665
Q ss_pred cCCChhHHHHHHHHHHHHh
Q 035507 514 HNHKNSIKKEVSWIISNIA 532 (684)
Q Consensus 514 ~~~~~~v~~~a~~~L~nl~ 532 (684)
++ ..-.|+.+.-++..++
T Consensus 1109 s~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1109 SS-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred ch-hhhhhhhHHhhhhHHh
Confidence 55 4444444444444443
No 278
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.67 E-value=1.1e+02 Score=35.28 Aligned_cols=308 Identities=14% Similarity=0.106 Sum_probs=146.9
Q ss_pred HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hcCC--CChHHHHHHHHHHHHh
Q 035507 285 EEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK-LLAS--PSDDVREQAVWALGNV 361 (684)
Q Consensus 285 ~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~-lL~~--~~~~v~~~a~~~L~nL 361 (684)
+++.+...+..+-+-|...+...-|..|+..+..++...+.....++. +.+..+++ ...+ .+..-++.|+.....+
T Consensus 355 eElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~tal 433 (960)
T KOG1992|consen 355 EELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTAL 433 (960)
T ss_pred HHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHH
Confidence 455566666666677766553455677888888888844333333332 22444443 3333 3455566777777777
Q ss_pred hCCCCCCchhHhhcCCHH--------HHHHHhcc---CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCC
Q 035507 362 AADSSGCRDLVLSEGALI--------PLLAQLNE---HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSN 430 (684)
Q Consensus 362 a~~~~~~r~~i~~~g~l~--------~Ll~~L~~---~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~ 430 (684)
+......+.-+...+-+- .++..|.+ ...+-++..+ +-.+-.............++|.+..++..+
T Consensus 434 aik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~a---IKy~~~FR~ql~~~~lm~~~p~li~~L~a~ 510 (960)
T KOG1992|consen 434 AIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADA---IKYIYTFRNQLGKEHLMALLPRLIRFLEAE 510 (960)
T ss_pred HhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcc---cceeeeecccCChHHHHHHHHHHHHhccCc
Confidence 744322221111111111 12222212 1112222222 222222223344455678899999999999
Q ss_pred cHHHHHHHHHHHHhhccCCChHHHHHHHHh-chH----HH---HHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc
Q 035507 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEA-GVC----GR---LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502 (684)
Q Consensus 431 d~~v~~~al~~L~~L~~~~~~~~~~~~~~~-g~l----~~---L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~ 502 (684)
..-+-..|..++-.+. ...+.....+... .+. .. |+..++.+...--...+.++..+..-.++.+.....
T Consensus 511 s~vvhsYAA~aiEkil-~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~- 588 (960)
T KOG1992|consen 511 SRVVHSYAAIAIEKLL-TVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAP- 588 (960)
T ss_pred chHHHHHHHHHHHhcc-ccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhh-
Confidence 9999999988887665 2222211111111 111 22 222233332222233444444444333322211110
Q ss_pred CChHHHHHHh----ccCCChhHH---HHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507 503 GAVPCLLALL----IHNHKNSIK---KEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS 574 (684)
Q Consensus 503 g~l~~L~~lL----~~~~~~~v~---~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~ 574 (684)
..+..|.+++ .++.++..- -++..++-+.+. .++..+.. .+..++|.+..++..+-.+.--.+...++-+.
T Consensus 589 ~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~-~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lv 667 (960)
T KOG1992|consen 589 ELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSS-LEEALFPVFQTILSEDIQEFIPYVFQLLAVLV 667 (960)
T ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233333333 333234322 233333444433 44444443 44458888888887765555555555555554
Q ss_pred cCC---CHHHHH---------HHH-HCCChHHHHhhcc
Q 035507 575 SRG---THDQIK---------YLV-TEGCIKPLCDLLQ 599 (684)
Q Consensus 575 ~~~---~~~~~~---------~l~-~~g~l~~L~~lL~ 599 (684)
... -++... .+. ..|-+++++.++.
T Consensus 668 e~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 668 EHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred HhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 322 222221 222 3677888887775
No 279
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.41 E-value=58 Score=39.47 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHH-hc-CChHHHHHh--cCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHH
Q 035507 307 QLQFQAAWALTNIASGTSENTKVVI-EH-DAVPIFVKL--LASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLL 382 (684)
Q Consensus 307 ~v~~~A~~~L~~l~~~~~~~~~~i~-~~-g~i~~Li~l--L~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll 382 (684)
.++..++.++.+.++.+......+. +. |.+-....+ ..++..+++...+.++.++-...-+ .+. .| .+.++
T Consensus 811 s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~ 885 (1610)
T KOG1848|consen 811 SILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVF 885 (1610)
T ss_pred HHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHH
Confidence 3444444455555543333333222 11 323223322 2346677888888888888754322 111 12 33444
Q ss_pred HHhc---cC---CchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhc
Q 035507 383 AQLN---EH---TELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLS 446 (684)
Q Consensus 383 ~~L~---~~---~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~ 446 (684)
+.+. .. ....+.+.+..+|.-++.+. +.-+.....+++..+..... ..|..+--.|+..++.++
T Consensus 886 eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 886 EMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 4432 11 24567777888888888777 77777778888888877765 456777777777666666
No 280
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=81.23 E-value=6.4 Score=35.21 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=58.1
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH-DNNEIHEKSVKIL 668 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~-~~~~i~~~a~~ii 668 (684)
++..|..-+.+.++.++..++..|..+++.+... |...+-..++++.|..+... .+++|.+++..+|
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li 105 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 4667777788899999999999999999887653 56667777788888888655 7899999999999
Q ss_pred HHh
Q 035507 669 ETY 671 (684)
Q Consensus 669 ~~~ 671 (684)
+.+
T Consensus 106 ~~W 108 (144)
T cd03568 106 KQW 108 (144)
T ss_pred HHH
Confidence 987
No 281
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=80.77 E-value=81 Score=33.36 Aligned_cols=223 Identities=12% Similarity=0.138 Sum_probs=127.4
Q ss_pred chHHHHHHHHHHHHhccCC---CCCChhhhhchHHHHHHHhcC--CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHH
Q 035507 390 ELSMLRIATTTLSNLCRGK---PRPLFDQVRPALPALAQLIHS--NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCG 464 (684)
Q Consensus 390 ~~~v~~~a~~~L~nL~~~~---~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~ 464 (684)
+..+...|+.+++.+.... ..-......-++...+..+.+ .+..+....+|+|+.=- -+.. ++....+.
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~--f~~~----~~~~~~~~ 132 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK--FSPK----IMTSDRVE 132 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--CCCc----ccchhhHH
Confidence 6678888888888887764 111122222344445555543 34677888888887533 1111 22223333
Q ss_pred HHHHhc----C-CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc--CChH
Q 035507 465 RLVELL----G-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC--GNRE 537 (684)
Q Consensus 465 ~L~~lL----~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~ 537 (684)
.++..+ + -++..+...++.++.++....+.....-. .-.+|.++..+-+. ...+|..|...+..+.. +...
T Consensus 133 ~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~-~~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~ 210 (372)
T PF12231_consen 133 RLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHA-DIWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNK 210 (372)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhH
Confidence 333333 2 35667888999999999877764432211 12677777777676 67777776555554432 2211
Q ss_pred HH----HHHHHh----C-----CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC-HHHHHHHHHCCChHHHHhhccCCCh
Q 035507 538 QI----QAVIDA----G-----LIGPLVNLLQNAEFDIKEEAAWAISNASSRGT-HDQIKYLVTEGCIKPLCDLLQCADP 603 (684)
Q Consensus 538 ~~----~~l~~~----g-----~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~g~l~~L~~lL~~~~~ 603 (684)
.. ....+. + +.+.|..++.+++......-+|...-...+.. .+....+ ...+.....+++++|+
T Consensus 211 ~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~ 288 (372)
T PF12231_consen 211 ELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDP 288 (372)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCH
Confidence 11 111221 2 23446666666444444455566665555433 2222221 2256667778889999
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 035507 604 KIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 604 ~v~~~al~~L~~il~~~~~ 622 (684)
.++..|..+-..+......
T Consensus 289 ~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 289 QVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999988885433
No 282
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.21 E-value=8.5 Score=36.49 Aligned_cols=131 Identities=14% Similarity=0.116 Sum_probs=90.9
Q ss_pred HHHHHhcCChHHHHHHHHhCCHHHHHHHhcc-----CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 035507 527 IISNIACGNREQIQAVIDAGLIGPLVNLLQN-----AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA 601 (684)
Q Consensus 527 ~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~ 601 (684)
.+..+.+..|+....++++.+--.+...+.. +-..+|-.+..+++.+...+++...+.+....+++.....++..
T Consensus 122 ~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g 201 (315)
T COG5209 122 NLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG 201 (315)
T ss_pred HHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh
Confidence 3344444556777777777664444444432 24557888999999999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHH-----HHhhcCCCHHHHHHHHHH
Q 035507 602 DPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKI-----ENLQSHDNNEIHEKSVKI 667 (684)
Q Consensus 602 ~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L-----~~L~~~~~~~i~~~a~~i 667 (684)
+.--...+..++..|+.... +.+..|+.+++..++..+ ..+-......+.+.|..+
T Consensus 202 SElSktvaifI~qkil~dDv----------GLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRc 262 (315)
T COG5209 202 SELSKTVAIFIFQKILGDDV----------GLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRC 262 (315)
T ss_pred hHHHHHHHHHHHHHHhccch----------hHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 88778888888888886543 345578888877766532 333344455554444443
No 283
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=80.03 E-value=32 Score=32.36 Aligned_cols=77 Identities=19% Similarity=0.141 Sum_probs=59.6
Q ss_pred hhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh
Q 035507 416 VRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 495 (684)
Q Consensus 416 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 495 (684)
++..++.++++..+++..++..|+..+.-+...+- +--...+|.++.+..++++.++..|...+..+....+..
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL------vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGL------VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC------CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 45667888888889999999999999987772211 111136899999999999999999999999998776654
Q ss_pred HHH
Q 035507 496 TQC 498 (684)
Q Consensus 496 ~~~ 498 (684)
...
T Consensus 80 v~~ 82 (187)
T PF12830_consen 80 VES 82 (187)
T ss_pred HHH
Confidence 443
No 284
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=79.52 E-value=86 Score=32.90 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=85.6
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhc---CC------CCHHHHHHHHHHHHHHh
Q 035507 251 LPMMVAGVWSDD-NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLM---RE------DYPQLQFQAAWALTNIA 320 (684)
Q Consensus 251 l~~lv~~L~s~~-~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~---~~------~~~~v~~~A~~~L~~l~ 320 (684)
-..+++.|..+. +..+...+..++ +++++....+.+.....+..|+.+-. .+ .+..+..+|..||.|+.
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~Letvr-ILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVR-ILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHH-HHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 356677777666 345556666664 45555422222222223344444332 11 12478899999999999
Q ss_pred cCCchhHHHHHhcCChHHHHHhcCC-----CChHHHHHHHHHHHHhhCCCCCCch-hHhhcCCHHHHHHHhccC------
Q 035507 321 SGTSENTKVVIEHDAVPIFVKLLAS-----PSDDVREQAVWALGNVAADSSGCRD-LVLSEGALIPLLAQLNEH------ 388 (684)
Q Consensus 321 ~~~~~~~~~i~~~g~i~~Li~lL~~-----~~~~v~~~a~~~L~nLa~~~~~~r~-~i~~~g~l~~Ll~~L~~~------ 388 (684)
.+++..+....+......+++.+.. ....+...=+..|.-+..-.+..|. .+...++++.+.+.+...
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse 205 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSE 205 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCC
Confidence 9999999999988887777775532 1111222222233333222222333 344666777777666421
Q ss_pred --C------chHHHHHHHHHHHHhccCC
Q 035507 389 --T------ELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 389 --~------~~~v~~~a~~~L~nL~~~~ 408 (684)
. +......++-++.|+....
T Consensus 206 ~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 206 INVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 1 1223344566666776654
No 285
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=79.02 E-value=8.9 Score=34.21 Aligned_cols=70 Identities=20% Similarity=0.355 Sum_probs=57.4
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQS-HDNNEIHEKSVKIL 668 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~-~~~~~i~~~a~~ii 668 (684)
++..|..-+.+.++.++..++..|..+++.+... +...+...+.++.+..+.. ..++.|.+++..++
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li 109 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH------------FHDEVASREFMDELKDLIKTTKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 4667777888899999999999999999875432 5667777788888888854 67889999999999
Q ss_pred HHh
Q 035507 669 ETY 671 (684)
Q Consensus 669 ~~~ 671 (684)
+.+
T Consensus 110 ~~W 112 (142)
T cd03569 110 QAW 112 (142)
T ss_pred HHH
Confidence 876
No 286
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=78.92 E-value=82 Score=36.78 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHh
Q 035507 348 DDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI 427 (684)
Q Consensus 348 ~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL 427 (684)
+.++.++.-+|+++|-..... ....+|.+++-|..+....++.+.+-+...+|... ...+...+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence 567889999999998554332 22347888888988888888888777777777652 245577899999999
Q ss_pred cCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHc
Q 035507 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490 (684)
Q Consensus 428 ~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 490 (684)
.++++-|+..++-.|++|. +..-.. ....++-+++--+-+.+++++.-|=.+++.+..
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLL-q~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLL-QFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred cCchHHHHHHHHHHHHHHH-hhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998 321100 111223333434445677778777777777654
No 287
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.65 E-value=7.5 Score=34.70 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=60.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIAS 321 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~ 321 (684)
+++..+.+.|+++++.+|..|+..|..+..... +-...+...+++..|+.+++....+.|+..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999988887654 4456677888999999999754448999999998888875
No 288
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=78.06 E-value=77 Score=31.58 Aligned_cols=169 Identities=16% Similarity=0.121 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHhhCCCCC-------CchhHhhcCCHHHHHHHhccCC---chHHHHHHHHHHHHhccCCCCCChhhhh
Q 035507 348 DDVREQAVWALGNVAADSSG-------CRDLVLSEGALIPLLAQLNEHT---ELSMLRIATTTLSNLCRGKPRPLFDQVR 417 (684)
Q Consensus 348 ~~v~~~a~~~L~nLa~~~~~-------~r~~i~~~g~l~~Ll~~L~~~~---~~~v~~~a~~~L~nL~~~~~~~~~~~~~ 417 (684)
....+.++..|..++..... .|-.+.-.+.+|.++..+.+.. .......++..|+.+|........ .
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~L---a 152 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNL---A 152 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccH---H
Confidence 34556677788887744321 1212222223455555553333 124455677888888865422211 1
Q ss_pred chHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHH
Q 035507 418 PALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ 497 (684)
Q Consensus 418 ~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 497 (684)
.++....+--..+..+-...++..+..-. .++ .+..++..++.+|..+-+.++..++.+|..+....+-...
T Consensus 153 ~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~ 224 (262)
T PF14225_consen 153 RILSSYAKGRFRDKDDFLSQVVSYLREAF--FPD------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP 224 (262)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cch------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC
Confidence 11221111111233444555555554322 111 1234567789999988889999999999999876653322
Q ss_pred HHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 498 CIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 498 ~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
....++..+.++++++ .-.+|..+|-++..
T Consensus 225 --~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 225 --HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred --cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 4445788888999776 45577777766643
No 289
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=77.87 E-value=24 Score=35.72 Aligned_cols=138 Identities=14% Similarity=0.199 Sum_probs=78.9
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH-HHHHhcCChHHHHH----hcC--------CCChHHHHHHHHHH
Q 035507 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT-KVVIEHDAVPIFVK----LLA--------SPSDDVREQAVWAL 358 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~-~~i~~~g~i~~Li~----lL~--------~~~~~v~~~a~~~L 358 (684)
++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+-+ .+. .+...+...|.-+|
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 6899999999887 9999999999999998444333 23556665444433 333 24456777788888
Q ss_pred HHhhCC----CCCCchhHhhcCCHHHHHHHhccCCc---hHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCC
Q 035507 359 GNVAAD----SSGCRDLVLSEGALIPLLAQLNEHTE---LSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSN 430 (684)
Q Consensus 359 ~nLa~~----~~~~r~~i~~~g~l~~Ll~~L~~~~~---~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~ 430 (684)
..++.. ....|......-.-..++..+....+ +.+....+..+..+...-..........+++.+.+.+..+
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 887532 11112222111111223333322223 5666666666665555533333444466666666655543
No 290
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=77.82 E-value=17 Score=32.48 Aligned_cols=73 Identities=8% Similarity=0.086 Sum_probs=61.8
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CChHHHHHHHHHHHHHHhc
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC-ADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~-~~~~v~~~al~~L~~il~~ 619 (684)
++..|.+-+.++++.++..|+..|-.++..+.......+....+++.|..++.. .++.|...++..+......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 455666677888999999999999999998888888888888899999999987 7888999999888876543
No 291
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=77.44 E-value=16 Score=32.36 Aligned_cols=73 Identities=12% Similarity=-0.013 Sum_probs=60.2
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CChHHHHHHHHHHHHHHhc
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC------ADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~------~~~~v~~~al~~L~~il~~ 619 (684)
++..+.+-+.++++.++..|+..|-.++..+...+...+...+++..|+.++.. .++.|+..++..+...-..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 455666778888999999999999999998888887888888899999998853 4678999999888877654
No 292
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=77.32 E-value=16 Score=30.20 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=58.2
Q ss_pred HCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHH
Q 035507 587 TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVK 666 (684)
Q Consensus 587 ~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ 666 (684)
....+..|.+....+.+.....++..+..+++... -...+.+.|+.+-+.++..+-+++.+.....
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~--------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~ 93 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY--------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDE 93 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH--------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence 45577888888888888889999999999887542 3477888999999999999999999999888
Q ss_pred HHHH
Q 035507 667 ILET 670 (684)
Q Consensus 667 ii~~ 670 (684)
|+++
T Consensus 94 il~~ 97 (98)
T PF14726_consen 94 ILDQ 97 (98)
T ss_pred HHhc
Confidence 8864
No 293
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=77.12 E-value=3.3 Score=39.86 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCC-------hHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCC-CchhHhhcCC
Q 035507 307 QLQFQAAWALTNIASGTSENTKVVIEHDA-------VPIFVKLLAS-PSDDVREQAVWALGNVAADSSG-CRDLVLSEGA 377 (684)
Q Consensus 307 ~v~~~A~~~L~~l~~~~~~~~~~i~~~g~-------i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~-~r~~i~~~g~ 377 (684)
.-|..|+.+|.+++- .+.+.+.+...+- +..|++++.. +++..||.|+-.|.++|..++. +|....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 458889999999997 5666666666654 3444555544 7889999999999999976654 4455567788
Q ss_pred HHHHHHHhc
Q 035507 378 LIPLLAQLN 386 (684)
Q Consensus 378 l~~Ll~~L~ 386 (684)
+..|+.++.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999984
No 294
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=76.79 E-value=0.73 Score=56.61 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=32.9
Q ss_pred hccccccCCccccccccCccccccCCccceeeccCcccccccc
Q 035507 137 EKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSR 179 (684)
Q Consensus 137 l~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~Cp~l~~~~~ 179 (684)
|+.|.|.++++|+++-.+ +.+++|+.+.+.+|+.++.|+.
T Consensus 683 L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 683 LEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred CCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCcccccc
Confidence 588888888888888664 4688999999999999887764
No 295
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=76.12 E-value=56 Score=34.02 Aligned_cols=218 Identities=18% Similarity=0.112 Sum_probs=110.1
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507 288 IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 288 i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
+...++..+..++..+.++.....++.++..-+..- ..-+...++..+..-+.+..+.+|..-+..++.+....+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 334466777778876655666666666666555311 0112224466667777777777999888888888751111
Q ss_pred CchhHhhcCCHHHHHHHhcc---CCchHHH---HHHHHHHHHhccCC-CCCCh-hh-----hhchHHHHH---HHhcC-C
Q 035507 368 CRDLVLSEGALIPLLAQLNE---HTELSML---RIATTTLSNLCRGK-PRPLF-DQ-----VRPALPALA---QLIHS-N 430 (684)
Q Consensus 368 ~r~~i~~~g~l~~Ll~~L~~---~~~~~v~---~~a~~~L~nL~~~~-~~~~~-~~-----~~~~l~~L~---~lL~~-~ 430 (684)
....-.-...++.++..+.. ++.+... -.++.++..++... ..... .. ..+-=|.++ ++... .
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 11111122345666666631 1111111 01111111111111 00000 00 000000000 22222 4
Q ss_pred cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC--CcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHH
Q 035507 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP--SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 508 (684)
Q Consensus 431 d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L 508 (684)
+++.....++++..+. .........-.....-..++.++.++ ...+|..|+.++..+...++.. +...++..+
T Consensus 175 ~~~d~~w~~~al~~~~-~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 175 SEEDLCWLLRALEALL-SDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CHhHHHHHHHHHHHHH-hcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence 5556666777776666 33222221111234566788888887 8899999999999998877753 223345556
Q ss_pred HHHhcc
Q 035507 509 LALLIH 514 (684)
Q Consensus 509 ~~lL~~ 514 (684)
-..+..
T Consensus 250 ~~~l~~ 255 (339)
T PF12074_consen 250 WKWLSS 255 (339)
T ss_pred HHHHHh
Confidence 666643
No 296
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=75.53 E-value=42 Score=29.00 Aligned_cols=74 Identities=12% Similarity=0.289 Sum_probs=52.4
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHh-chHHHHHHhh--------cCCCHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEA-EGLEKIENLQ--------SHDNNEI 660 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~-g~~~~L~~L~--------~~~~~~i 660 (684)
+++.|..-|++.++.|...+|.+|..++..+... |...+.+. ..+..+.+.. ...+..|
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~------------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~V 106 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD------------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKV 106 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH------------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHH
Confidence 5677888888888999999999999999987543 33333332 2333333332 2345689
Q ss_pred HHHHHHHHHHhcCCC
Q 035507 661 HEKSVKILETYWCGR 675 (684)
Q Consensus 661 ~~~a~~ii~~~f~~e 675 (684)
+..|.++++-.|+++
T Consensus 107 R~~A~El~~~if~~~ 121 (122)
T cd03572 107 REEAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999875
No 297
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=75.37 E-value=17 Score=32.03 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=55.5
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhc---CCCHHHHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQS---HDNNEIHEKSVK 666 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~---~~~~~i~~~a~~ 666 (684)
++..|..-+.++++.++..++..|..+++.+... |...+.....++.+..+.. ..+++|.+++..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~------------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ 105 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP------------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALE 105 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH------------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 4667777888999999999999999999886543 5566666666777777754 358899999999
Q ss_pred HHHHh
Q 035507 667 ILETY 671 (684)
Q Consensus 667 ii~~~ 671 (684)
++..+
T Consensus 106 ll~~W 110 (133)
T cd03561 106 LILAW 110 (133)
T ss_pred HHHHH
Confidence 99876
No 298
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=75.18 E-value=38 Score=34.40 Aligned_cols=80 Identities=13% Similarity=0.252 Sum_probs=65.2
Q ss_pred HhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCCCH-HHHHHHHHCCChHHHHhhccCC---ChHHHHHHHHHHHHHH
Q 035507 544 DAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRGTH-DQIKYLVTEGCIKPLCDLLQCA---DPKIVTVCLEGLENIL 617 (684)
Q Consensus 544 ~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~-~~~~~l~~~g~l~~L~~lL~~~---~~~v~~~al~~L~~il 617 (684)
+.|++..+++.+... +...+-.-+.|+-.+..+.++ ....++.+.|.++.+++.+-++ +..+.+...+.|..++
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 357788888887654 777888999999999998887 5667889999999999977654 3469999999999999
Q ss_pred hccccc
Q 035507 618 KVGEAE 623 (684)
Q Consensus 618 ~~~~~~ 623 (684)
+.....
T Consensus 173 K~n~~~ 178 (303)
T PF12463_consen 173 KFNRDA 178 (303)
T ss_pred CCCHHH
Confidence 876543
No 299
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=74.47 E-value=1.5e+02 Score=33.34 Aligned_cols=160 Identities=17% Similarity=0.144 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHH---hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHH
Q 035507 306 PQLQFQAAWALTNIASGTSENTKVVI---EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLL 382 (684)
Q Consensus 306 ~~v~~~A~~~L~~l~~~~~~~~~~i~---~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll 382 (684)
.+++.-|+.+|.-+..+.+..-...- .+..+..++..+. .++..+-.++++|.|+..+. ..++.+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~-~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNP-AGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCH-HHHHHHHHH--HHHHh
Confidence 57888899999888875443332222 2335556666555 45667778999999998884 345554432 23333
Q ss_pred HHhc---cCCchHHHHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHhcC-CcHHHHHHHHHHHHhhccCCChHHHHH
Q 035507 383 AQLN---EHTELSMLRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLIHS-NDEQVLTDACWALFGLSGDRNNDKIQA 456 (684)
Q Consensus 383 ~~L~---~~~~~~v~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~~~~ 456 (684)
..+. ..++..++........|++-.- ...+......+...+..++.. +|-+....++.|+++++ ..+....+
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~-t~~~~~~~- 711 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM-TVDASVIQ- 711 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc-cccHHHHH-
Confidence 2221 2233344443333333332211 111122222222233333332 33445667788888888 54443333
Q ss_pred HHHhchHHHHHHhcC
Q 035507 457 VIEAGVCGRLVELLG 471 (684)
Q Consensus 457 ~~~~g~l~~L~~lL~ 471 (684)
+...--+..+++-++
T Consensus 712 ~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 712 LAKNRSVDSIAKKLK 726 (745)
T ss_pred HHHhcCHHHHHHHHH
Confidence 333323444444443
No 300
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=74.07 E-value=26 Score=35.08 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=82.9
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhc--hHHHHHHhc----CCCCcccHhHHHHHHHHHHcCC
Q 035507 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAG--VCGRLVELL----GHPSPSVLTPALWTVGNIVMGD 492 (684)
Q Consensus 419 ~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g--~l~~L~~lL----~~~~~~v~~~al~~L~nl~~~~ 492 (684)
....+...+..=.++-+..++..++-++ ..+.....+...+ +...+..++ ....+..+.-++|+++|+....
T Consensus 64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~--l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~ 141 (268)
T PF08324_consen 64 WLILLLKILLSWPPESRFPALDLLRLAA--LHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP 141 (268)
T ss_dssp HHHHHHHHHCCS-CCC-HHHHHHHHHHC--CCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHH--hCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC
Confidence 3444445444333444666666665555 2332333232221 223333333 2346677888999999998765
Q ss_pred hhhHHHHHhcC--ChHHHHHHhccCC---ChhHHHHHHHHHHHHhcCChHHH-HHHHHhCCHHHHHHHhcc--CCHhHHH
Q 035507 493 DFQTQCIINHG--AVPCLLALLIHNH---KNSIKKEVSWIISNIACGNREQI-QAVIDAGLIGPLVNLLQN--AEFDIKE 564 (684)
Q Consensus 493 ~~~~~~~i~~g--~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~g~l~~Li~ll~~--~~~~v~~ 564 (684)
. .++.+.++. .+...+..+.... +..+|..++..+.|++....... ..-....++..+.+.+.. .++++..
T Consensus 142 ~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~ 220 (268)
T PF08324_consen 142 P-GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALY 220 (268)
T ss_dssp C-CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHH
T ss_pred c-cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHH
Confidence 5 444454322 2222222222221 57789999999999975210000 000111245556664433 4899999
Q ss_pred HHHHHHHHhhcC
Q 035507 565 EAAWAISNASSR 576 (684)
Q Consensus 565 ~a~~aL~nl~~~ 576 (684)
.++-|+++++..
T Consensus 221 R~LvAlGtL~~~ 232 (268)
T PF08324_consen 221 RLLVALGTLLSS 232 (268)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhcc
Confidence 999999999964
No 301
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=73.99 E-value=1.7e+02 Score=33.46 Aligned_cols=104 Identities=12% Similarity=0.143 Sum_probs=71.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhH
Q 035507 293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372 (684)
Q Consensus 293 i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i 372 (684)
|..|..+-.++- +.++.+|+..+..+....|++-..+ +..++.-|.+++..+...|...|.+|....|..+..+
T Consensus 306 ievLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 306 IEVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 344444434444 7899999999999998788766554 5677888999999999999999999999998866554
Q ss_pred hhcCCHHHHHHHh-ccCCchHHHHHHHHHHHHhccC
Q 035507 373 LSEGALIPLLAQL-NEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 373 ~~~g~l~~Ll~~L-~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
. ..+-.++ ..+.+.....+|+.+|+.+.-.
T Consensus 380 i-----~EIer~~FRpn~~~ra~Yyav~fLnQ~~Ls 410 (988)
T KOG2038|consen 380 I-----DEIERLAFRPNVSERAHYYAVIFLNQMKLS 410 (988)
T ss_pred H-----HHHHHHHcccCccccceeehhhhhhhhHhc
Confidence 3 3333333 2333444455666666665443
No 302
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=73.79 E-value=34 Score=34.55 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=57.1
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc------------CCChHHHHHHHHHHH
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ------------CADPKIVTVCLEGLE 614 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~------------~~~~~v~~~al~~L~ 614 (684)
++|.++.++++.++++|..++.++..+........-..+.+.|..+.+.+.+. .....+...+..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 79999999999999999999999999998554444334667777655555442 345678899999999
Q ss_pred HHHhcc
Q 035507 615 NILKVG 620 (684)
Q Consensus 615 ~il~~~ 620 (684)
.++...
T Consensus 200 ~L~~~~ 205 (282)
T PF10521_consen 200 SLLKTQ 205 (282)
T ss_pred HHHHhh
Confidence 988764
No 303
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=73.63 E-value=18 Score=43.06 Aligned_cols=236 Identities=19% Similarity=0.230 Sum_probs=130.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHH-HHHHcCC--------HHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIE-EVIESGV--------VPRFVEFLMREDYPQLQFQAAWALTNI 319 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~-~ii~~g~--------i~~Lv~lL~~~~~~~v~~~A~~~L~~l 319 (684)
..+..|+..+-+..+++|.-|+.+++.++..+..... ..++.-+ +.++=.+..+.-...+++.++|+|..+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 4678899999999999999999999999876552111 1111111 111112222221246899999999988
Q ss_pred hcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHh--hcCCHHHHHHHhccCCchHHHHHH
Q 035507 320 ASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVL--SEGALIPLLAQLNEHTELSMLRIA 397 (684)
Q Consensus 320 ~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~--~~g~l~~Ll~~L~~~~~~~v~~~a 397 (684)
..+..+.... ..+..+.+++..++.+++...+..+.....- .++.+. -..+++..+.-+ .+++..++..|
T Consensus 157 l~~~~~s~~~----~~~~il~q~~~q~~w~ir~Ggll~iky~~ai---r~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~a 228 (1549)
T KOG0392|consen 157 LKHMDESLIK----ETLDILLQMLRQPNWEIRHGGLLGIKYNVAI---RQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVA 228 (1549)
T ss_pred HHhhhhHhhH----HHHHHHHHHHcCcchhheechHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhh-hhcchHHHHHH
Confidence 8733222211 2356677777777666655444444322110 112211 111234444555 56677888888
Q ss_pred HHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcH--HHHHHHHHHHHhhccCCCh--H-HHHHHHHhchHHHHHHhcCC
Q 035507 398 TTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDE--QVLTDACWALFGLSGDRNN--D-KIQAVIEAGVCGRLVELLGH 472 (684)
Q Consensus 398 ~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~--~v~~~al~~L~~L~~~~~~--~-~~~~~~~~g~l~~L~~lL~~ 472 (684)
+.++.-.....+......+..++..+...+..-|. .-.......+..++ ...+ + ..+.-...|++|.+...+.+
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~-~~~evl~l~~~~n~~~~Lvp~~~p~l~~ 307 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELC-IENEVLDLFEQQNLEVGLVPRLWPFLRH 307 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHh-hhHHHHHHHHHhhhhhccchhhHHHHHH
Confidence 88777666554444444445555555555543332 00111111222333 1110 0 01111224788899999988
Q ss_pred CCcccHhHHHHHHHHHHcCCh
Q 035507 473 PSPSVLTPALWTVGNIVMGDD 493 (684)
Q Consensus 473 ~~~~v~~~al~~L~nl~~~~~ 493 (684)
.-..++..++..+..+....+
T Consensus 308 ~i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 308 TISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 877888889998888876543
No 304
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.40 E-value=15 Score=32.40 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=55.8
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCC-C-HHHHHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD-N-NEIHEKSVKI 667 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~-~-~~i~~~a~~i 667 (684)
++..|..-+.+.++.++..++..|..+++.+... |...+...++++.|..+.... + +.|.+++..+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~------------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~l 105 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK------------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILEL 105 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 4666777788899999999999999999876442 667777788888888885443 3 3499999999
Q ss_pred HHHhc
Q 035507 668 LETYW 672 (684)
Q Consensus 668 i~~~f 672 (684)
+....
T Consensus 106 i~~W~ 110 (133)
T smart00288 106 IQEWA 110 (133)
T ss_pred HHHHH
Confidence 98763
No 305
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.35 E-value=13 Score=32.83 Aligned_cols=73 Identities=10% Similarity=0.029 Sum_probs=57.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCH-HHHHHHHHHHHHHhc
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYP-QLQFQAAWALTNIAS 321 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~-~v~~~A~~~L~~l~~ 321 (684)
+++..+.+.|+++++.++..|+..|-.+..... +-...+...+++..|+.+++..... .++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999988887755 3446666778899999998876533 388888888887775
No 306
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=73.31 E-value=20 Score=31.82 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=55.4
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhc------CCCHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQS------HDNNEIHEK 663 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~------~~~~~i~~~ 663 (684)
++..|..-+.+.++.++..++..|..+++.+... |...+-..++++.+..+.. ..++.|+++
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k 106 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER------------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK 106 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 4667777888999999999999999999876543 5566666777777777753 257899999
Q ss_pred HHHHHHHh
Q 035507 664 SVKILETY 671 (684)
Q Consensus 664 a~~ii~~~ 671 (684)
...+++.+
T Consensus 107 il~li~~W 114 (139)
T cd03567 107 IIELLYSW 114 (139)
T ss_pred HHHHHHHH
Confidence 99999876
No 307
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.19 E-value=1.1e+02 Score=37.23 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507 602 DPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY 671 (684)
Q Consensus 602 ~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~ 671 (684)
-.+.....+.++.+++.-.-+.-. ..|.+....++ .++-+..+..+.++++.-.|...+++.
T Consensus 1069 wtet~~ltisgIaklf~e~fk~ll------nln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1069 WTETSCLTISGIAKLFSENFKLLL------NLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHH------hcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 345566677777777654322211 11223333222 244455556777888877777766654
No 308
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=72.80 E-value=36 Score=31.65 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=56.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS 324 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~ 324 (684)
-+|.++..|...+...++.|...+..++....+..-.-+-..++..+.+.|.+.+ +++...++.+|..++..++
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~-~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRD-PEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhhh
Confidence 5789999999888888999999999988772222222233456777788888888 8999999999999966333
No 309
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=72.53 E-value=33 Score=28.34 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHH-HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 035507 264 NLQLEATTQFQKLLSIESMPIEEV-IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKL 342 (684)
Q Consensus 264 ~~~~~a~~~L~~l~s~~~~~~~~i-i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~l 342 (684)
+++..|+..+..-+...--....+ -..+++..|++....++ ...+..++..+..++. ++.....+.+-|+...|-++
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~kl 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKL 79 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHH
Confidence 455555554433232222222223 35567888888888888 4588889999999888 77788888888988887776
Q ss_pred cCCCChHHHHHHHHHH
Q 035507 343 LASPSDDVREQAVWAL 358 (684)
Q Consensus 343 L~~~~~~v~~~a~~~L 358 (684)
=..-++..+..+-.++
T Consensus 80 r~~~~~~~~~~id~il 95 (98)
T PF14726_consen 80 RPNVEPNLQAEIDEIL 95 (98)
T ss_pred HhcCCHHHHHHHHHHH
Confidence 6556666665555444
No 310
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=71.73 E-value=2.2 Score=25.40 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=14.3
Q ss_pred cCCccceeeccCcccc
Q 035507 160 FPSLEVLVVDDCHNMM 175 (684)
Q Consensus 160 fp~L~~~~v~~Cp~l~ 175 (684)
+|.|+.|.+..||++.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 6899999999999875
No 311
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=71.72 E-value=63 Score=35.02 Aligned_cols=302 Identities=13% Similarity=0.114 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHHhhCCCCCCchhHhhcCCHH-HHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhh-hhchHHHHHH
Q 035507 348 DDVREQAVWALGNVAADSSGCRDLVLSEGALI-PLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQ-VRPALPALAQ 425 (684)
Q Consensus 348 ~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~-~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~-~~~~l~~L~~ 425 (684)
...|-.|+.+||.++..-+.. ... .... .|+..| ++....-+..++-++...+.......... ...+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~--~~~--~~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPES--SLQ--EIFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccc--hHH--HHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 345778899999988654321 110 1233 366666 45444444556666666665542111111 3455566777
Q ss_pred HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHH-----HHHHhcCC-----CCcccHhHHHHHHHHH----HcC
Q 035507 426 LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCG-----RLVELLGH-----PSPSVLTPALWTVGNI----VMG 491 (684)
Q Consensus 426 lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~-----~L~~lL~~-----~~~~v~~~al~~L~nl----~~~ 491 (684)
.|..+.+..-......+..+- .........+.+.|.++ .|-...+. ++.-....|-.+.+.. ...
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr-~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~ 254 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLR-TECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKS 254 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHh
Confidence 777444333333344444443 33344455555666532 22211111 1111112222222221 100
Q ss_pred C---hhh--HHHHHh--cC---ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CH
Q 035507 492 D---DFQ--TQCIIN--HG---AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EF 560 (684)
Q Consensus 492 ~---~~~--~~~~i~--~g---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~ 560 (684)
- ... .+.+-+ .. .+......-..- +..|+..++.++..+-.- |+... -+|..|++-++.+ +.
T Consensus 255 l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~-~~~V~Aa~A~A~v~l~~l-P~KLn-----PiIrpLMdSIK~Een~ 327 (441)
T PF12054_consen 255 LSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSR-DVRVLAAAASALVALGGL-PKKLN-----PIIRPLMDSIKREENE 327 (441)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccC-CCCcc-----HHHHHHHHHhhccccH
Confidence 0 000 000000 00 111111111111 334444444444444321 12111 2566777777665 88
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC---CChHHH--HHHHHHHHHHHhcccccccCCCCCcchhH
Q 035507 561 DIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC---ADPKIV--TVCLEGLENILKVGEAEKNTDSDIGDINQ 635 (684)
Q Consensus 561 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~---~~~~v~--~~al~~L~~il~~~~~~~~~~~~~~~~~~ 635 (684)
.++..++.+|..++.... .++.=....+++-|+.++-. ..|++- ...-+.+-.+-+.................
T Consensus 328 ~LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~ 405 (441)
T PF12054_consen 328 LLQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQ 405 (441)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhh
Confidence 999999999998875321 00000123356677777632 222221 11111221222211111000000112333
Q ss_pred HHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 035507 636 FAQLVEEAEGLEKIENLQSHDNNEIHEKS 664 (684)
Q Consensus 636 ~~~~i~~~g~~~~L~~L~~~~~~~i~~~a 664 (684)
-...+.+-|+...|+.|..+-.+++.++.
T Consensus 406 ~~a~I~RrGA~~aL~~l~~~FG~~Lf~~l 434 (441)
T PF12054_consen 406 KEARIQRRGAELALEQLAKRFGSSLFEKL 434 (441)
T ss_pred hhhHHHhcCHHHHHHHHHHHHhHHHHHhh
Confidence 45678889999999998877777766654
No 312
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.13 E-value=1.6e+02 Score=34.91 Aligned_cols=254 Identities=15% Similarity=0.182 Sum_probs=149.3
Q ss_pred HHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCC---
Q 035507 270 TTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP--- 346 (684)
Q Consensus 270 ~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~--- 346 (684)
..+|..++....++...+.++.++..++.++-++ +-|.-.++++..+...++.+.. +.-+-.++..|+++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind---ehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt 735 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND---EHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVT 735 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech---HHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhccee
Confidence 4566667777778888888888888888877433 3444455555555554444221 12234455555541
Q ss_pred ---------ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC---------Cch----HHHHHHHHHHH--
Q 035507 347 ---------SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH---------TEL----SMLRIATTTLS-- 402 (684)
Q Consensus 347 ---------~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~---------~~~----~v~~~a~~~L~-- 402 (684)
...+....+.+++.+.+.+-..|..+.+.+++..|+..|..- .|. ++... +.-+.
T Consensus 736 ~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfki-lFrlfTl 814 (2799)
T KOG1788|consen 736 RISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKI-LFRLFTL 814 (2799)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHH-HHHHHHH
Confidence 124455667888888877777788888888888887776321 121 11111 11111
Q ss_pred HhccCCCCCChhhh-------------hc---------hHHHHH----HHhcCCcHHHHHHHHHHHHhhccCC-------
Q 035507 403 NLCRGKPRPLFDQV-------------RP---------ALPALA----QLIHSNDEQVLTDACWALFGLSGDR------- 449 (684)
Q Consensus 403 nL~~~~~~~~~~~~-------------~~---------~l~~L~----~lL~~~d~~v~~~al~~L~~L~~~~------- 449 (684)
.+|.+..++..... .+ .+..+. +.+.+++-..-..||..+..+- ++
T Consensus 815 avcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfele-dnifavntP 893 (2799)
T KOG1788|consen 815 AVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELE-DNIFAVNTP 893 (2799)
T ss_pred HHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcc-cceeeeccC
Confidence 12222211111100 11 111111 1122233333344555554433 21
Q ss_pred ---ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc---cCCChhHHHH
Q 035507 450 ---NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI---HNHKNSIKKE 523 (684)
Q Consensus 450 ---~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~---~~~~~~v~~~ 523 (684)
.....+.+..+|++..++..+-...++.+..-++.+..+++.++......-..|.+..+++++. ++ +......
T Consensus 894 sGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsg-sspfLsh 972 (2799)
T KOG1788|consen 894 SGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSG-SSPFLSH 972 (2799)
T ss_pred CCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcC-CchHhhc
Confidence 1233567888899999999988889999999999999999999988887778899888888763 33 3445566
Q ss_pred HHHHHHHHhc
Q 035507 524 VSWIISNIAC 533 (684)
Q Consensus 524 a~~~L~nl~~ 533 (684)
|..++..+++
T Consensus 973 alkIvemLga 982 (2799)
T KOG1788|consen 973 ALKIVEMLGA 982 (2799)
T ss_pred cHHHHHHHhh
Confidence 6666666655
No 313
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=71.01 E-value=89 Score=29.12 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=53.5
Q ss_pred CChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 503 g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
-.+|.+.+-|... +...+--|...+..+... ..+.+-.++- .++.++...|.+.++++...++.+|..++.
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3577777777776 555666777777776654 5555555554 378888899999999999999999999965
No 314
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=70.83 E-value=72 Score=35.29 Aligned_cols=217 Identities=12% Similarity=-0.014 Sum_probs=119.3
Q ss_pred CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc-----------CCcHHHHHHHHHHHHhhccCCChHHHHH
Q 035507 388 HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH-----------SNDEQVLTDACWALFGLSGDRNNDKIQA 456 (684)
Q Consensus 388 ~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-----------~~d~~v~~~al~~L~~L~~~~~~~~~~~ 456 (684)
+++.++...|-..|..+...- ....++..|..+.. ..++.++..++..|+.-. ...
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~-------~Aa 314 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSL------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSV-------IAA 314 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCC------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhH-------HHH
Confidence 344566666666666655441 12344555555544 235666666666654421 000
Q ss_pred HHHhchHHHHHHhcCCC--CcccHhHHHHHH---HHHHcCChhh----HHHHHhcCChHHHHH----HhccCCChhHHHH
Q 035507 457 VIEAGVCGRLVELLGHP--SPSVLTPALWTV---GNIVMGDDFQ----TQCIINHGAVPCLLA----LLIHNHKNSIKKE 523 (684)
Q Consensus 457 ~~~~g~l~~L~~lL~~~--~~~v~~~al~~L---~nl~~~~~~~----~~~~i~~g~l~~L~~----lL~~~~~~~v~~~ 523 (684)
-....++..+..-+.+. +..++..++..+ .......... ...++..++.|.+-. --... +...|..
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~-~~~lR~~ 393 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSE-DIELRSL 393 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcc-cHHHHHH
Confidence 11123444444555555 567777887777 5555444322 233344556665510 01122 6789999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHH-HHHHHCCChHHHH-hhccCC
Q 035507 524 VSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQI-KYLVTEGCIKPLC-DLLQCA 601 (684)
Q Consensus 524 a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~g~l~~L~-~lL~~~ 601 (684)
|..+|+.++...+.... -+-+++..|.+.|..++++++...-.||..++.......- ........+..+. ......
T Consensus 394 aYe~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~ 471 (501)
T PF13001_consen 394 AYETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSE 471 (501)
T ss_pred HHHHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccch
Confidence 99999999987655431 2345788889989888999999888888888753211000 0000000111111 222344
Q ss_pred ChHHHHHHHHHHHHHHhcc
Q 035507 602 DPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 602 ~~~v~~~al~~L~~il~~~ 620 (684)
...++..+++....++-..
T Consensus 472 ~~~~R~~avk~an~~fpf~ 490 (501)
T PF13001_consen 472 VRSCRYAAVKYANACFPFS 490 (501)
T ss_pred hHHHHHHHHHHHHHhCCcc
Confidence 5567777777777766543
No 315
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=70.55 E-value=24 Score=31.00 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=58.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcH-HHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhc
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPI-EEVIESGVVPRFVEFLMRE--DYPQLQFQAAWALTNIAS 321 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~-~~ii~~g~i~~Lv~lL~~~--~~~~v~~~A~~~L~~l~~ 321 (684)
+++..+.+.|+++++.+|..|+..|-.+.....++. ..+.....+..|+.++... .++.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 477888999999999999999999988887766433 4455557888899999763 347899999999988876
No 316
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=70.46 E-value=16 Score=32.52 Aligned_cols=70 Identities=21% Similarity=0.373 Sum_probs=54.7
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhh-cCCCHH---HHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQ-SHDNNE---IHEKSV 665 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~-~~~~~~---i~~~a~ 665 (684)
++..|..-|.+.+|.++..++..+..+++.+... |...+-...+++.|..+. ...... |++++.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~------------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l 110 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR------------FHREVASKEFLDELVKLIKSKKTDPETPVKEKIL 110 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH------------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence 4667777888899999999999999999876432 666666677888888863 344444 999999
Q ss_pred HHHHHh
Q 035507 666 KILETY 671 (684)
Q Consensus 666 ~ii~~~ 671 (684)
.++..+
T Consensus 111 ~ll~~W 116 (140)
T PF00790_consen 111 ELLQEW 116 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 317
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=68.90 E-value=72 Score=37.24 Aligned_cols=145 Identities=20% Similarity=0.196 Sum_probs=92.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.-..+...+.++++......+.++..+..-...+... ...-++.-..-.+..- ..+......+|..++..+++....
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~ 518 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKE 518 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3456667777788777777777777766554411111 1112222222222222 466777888999999988888777
Q ss_pred HH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 330 VI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 330 i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
+. +.++...++.++-+++.++.+.|...|..+.+.. . |. +++..+++. + -........++|..+....
T Consensus 519 l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~-~-R~-----e~i~~ll~~---~-~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD-G-RL-----EAIQALLQS---N-FSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred HHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC-c-HH-----HHHHHHHHH---h-HHHHHHHHHHHHHHHHhhh
Confidence 77 4688999999999999999999999999987532 1 21 223333322 2 2345566777777776654
No 318
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=68.39 E-value=25 Score=29.91 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=51.8
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHh------hcCCCHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENL------QSHDNNEIHEK 663 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L------~~~~~~~i~~~ 663 (684)
++..|..-+.+.++.++..++..|..+++.+... |...+.....+..+..+ ....+..|+++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 4666777778889999999999999999987654 55555555555544321 13457899999
Q ss_pred HHHHHHHhc
Q 035507 664 SVKILETYW 672 (684)
Q Consensus 664 a~~ii~~~f 672 (684)
+..+++...
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 999998653
No 319
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=67.22 E-value=3.4 Score=21.86 Aligned_cols=16 Identities=19% Similarity=0.411 Sum_probs=10.1
Q ss_pred CCccceeeccCcccccc
Q 035507 161 PSLEVLVVDDCHNMMIF 177 (684)
Q Consensus 161 p~L~~~~v~~Cp~l~~~ 177 (684)
|+|++|.+.+|. |+.+
T Consensus 1 ~~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSL 16 (17)
T ss_dssp TT-SEEEETSS---SSE
T ss_pred CccCEEECCCCC-CCCC
Confidence 678999999987 6543
No 320
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=67.05 E-value=32 Score=44.70 Aligned_cols=199 Identities=14% Similarity=0.148 Sum_probs=106.0
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc---cCCchHHHHHHHHHHHHhcc
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN---EHTELSMLRIATTTLSNLCR 406 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~ 406 (684)
....+.+..+...+..+.-.+++.+...+++++..+|.+.-.-+ -...+..+. .+.-.-+...+..-+..+..
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~l----r~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~ 636 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSL----RKTLLELLTELEFSGMARTKEESAKLLCELII 636 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHH----HHHHHHHhchhhhcchHHhHHHHHHHhhHHHH
Confidence 34445566666667778888999999999999987763211000 001111111 11111011111111111111
Q ss_pred CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHHH
Q 035507 407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWTV 485 (684)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L 485 (684)
..+......+...+..++..+...+..+...+..+++.|+ ...........+ ..++.+.+.+.+ .+..-+..+++++
T Consensus 637 ~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~-~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l 714 (2341)
T KOG0891|consen 637 SSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELC-AVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKAL 714 (2341)
T ss_pred HHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHH-Hhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHh
Confidence 1111112233445566667777778888888999999998 443333333333 445555555544 4556678899999
Q ss_pred HHHHcCChhhHHHHHh-cCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 035507 486 GNIVMGDDFQTQCIIN-HGAVPCLLALLIHNHKNSIKKEVSWIISNIACG 534 (684)
Q Consensus 486 ~nl~~~~~~~~~~~i~-~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 534 (684)
+++............+ .-++..+...+.......++.++...++++...
T Consensus 715 ~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 715 GQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred hhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 9998655421111111 123445555555554567888888888876553
No 321
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=65.98 E-value=2.1e+02 Score=32.10 Aligned_cols=162 Identities=9% Similarity=0.061 Sum_probs=80.9
Q ss_pred CCcHHHHHHHHHHHHhhccCCChHHHHHH---HHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc--C
Q 035507 429 SNDEQVLTDACWALFGLSGDRNNDKIQAV---IEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH--G 503 (684)
Q Consensus 429 ~~d~~v~~~al~~L~~L~~~~~~~~~~~~---~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~--g 503 (684)
.-..+.+..|+.+|..+. .......... ....++..++..+. .++.-+..++|+|.|+..+ +...+.+... .
T Consensus 555 ~wp~~~~fPalDilRl~v-~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~ 631 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAV-KHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLES 631 (745)
T ss_pred cCCHHHhhhHHHHHHHHH-hccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Confidence 345667777777777776 3332221111 12235556666665 5567788899999999876 4344433321 1
Q ss_pred ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc---C--CHhHHHHHHHHHHHhhcCCC
Q 035507 504 AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN---A--EFDIKEEAAWAISNASSRGT 578 (684)
Q Consensus 504 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~---~--~~~v~~~a~~aL~nl~~~~~ 578 (684)
++..+...-..+ +..++...+....|.+.. .++.--+.+..+.+...+.. . +.+....++-|+++++...
T Consensus 632 i~~~~~~~~s~~-~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~- 706 (745)
T KOG0301|consen 632 ILDPVIEASSLS-NKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD- 706 (745)
T ss_pred Hhhhhhhhhccc-chhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc-
Confidence 122222222222 456666555555555421 11111112344444444332 1 4455556778888888733
Q ss_pred HHHHHHHHHCCChHHHHhhcc
Q 035507 579 HDQIKYLVTEGCIKPLCDLLQ 599 (684)
Q Consensus 579 ~~~~~~l~~~g~l~~L~~lL~ 599 (684)
....++...--++.+..-++
T Consensus 707 -~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 707 -ASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred -HHHHHHHHhcCHHHHHHHHH
Confidence 33344444333444444443
No 322
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=64.84 E-value=93 Score=26.89 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=52.7
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHC-CChHHHHhhccCCC--------hHHHHHHHHHHHHHH
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTE-GCIKPLCDLLQCAD--------PKIVTVCLEGLENIL 617 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-g~l~~L~~lL~~~~--------~~v~~~al~~L~~il 617 (684)
++..|.+=|++.++.|+..|+..|..++..|++.+...+.+. ..|..+.+.-...| ..|+..|-+++..|+
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 566778888888999999999999999999988887776543 34555444433223 357777878777766
Q ss_pred hc
Q 035507 618 KV 619 (684)
Q Consensus 618 ~~ 619 (684)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 43
No 323
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=62.95 E-value=31 Score=26.85 Aligned_cols=52 Identities=29% Similarity=0.487 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY 671 (684)
Q Consensus 606 ~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~ 671 (684)
...++++|..+-.... -.+.+.+.+.-..+..|..|+|++|...|..++..+
T Consensus 18 ~~~~l~~L~~L~~~~~--------------t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 18 VSRCLDILKKLKKLPI--------------TVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred HHHHHHHHHHHhcCCC--------------CHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3456666666554322 246777788778899999999999999999999865
No 324
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=61.82 E-value=88 Score=31.31 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHHHhcccccccC-C--CCCcchhHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCC
Q 035507 601 ADPKIVTVCLEGLENILKVGEAEKNT-D--SDIGDINQFAQLVEEAEGLEKIENLQSHD-NNEIHEKSVKILETYWCGRV 676 (684)
Q Consensus 601 ~~~~v~~~al~~L~~il~~~~~~~~~-~--~~~~~~~~~~~~i~~~g~~~~L~~L~~~~-~~~i~~~a~~ii~~~f~~e~ 676 (684)
.|..++..++..++|++.+.+..... . .+....+.+...+.+.|+++.|-.+..+. ..+-.....+|+.-.|.+.+
T Consensus 132 ~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 132 RDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCC
Confidence 35679999999999999984432111 0 11123566778888999999999997776 33333466677766666654
No 325
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=61.26 E-value=70 Score=28.66 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=86.0
Q ss_pred CchhHHHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCC--CCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHH
Q 035507 323 TSENTKVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAAD--SSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATT 399 (684)
Q Consensus 323 ~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~--~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~ 399 (684)
+++.-+.+.+...+..+++++.. ....++.+.+..++-+... ++..-..+.+.+.+..++..--+-.+.++...-+.
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 45667778888999999999887 6677888888877776632 22334567788888888877666778899998888
Q ss_pred HHHHhccCCCCCChh----hhhchHHHH---HHHhcCCcHHHHHHHHHHHHhhc
Q 035507 400 TLSNLCRGKPRPLFD----QVRPALPAL---AQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 400 ~L~nL~~~~~~~~~~----~~~~~l~~L---~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
.|..++-.-...... ...+-.|.. +++..++|..++.++-..+.++.
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 888887654222111 113344544 55667888888888877666653
No 326
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.00 E-value=4.1e+02 Score=32.99 Aligned_cols=75 Identities=11% Similarity=0.087 Sum_probs=52.6
Q ss_pred hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 545 AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 545 ~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
.+++|.|..-|.+.+..+|..|...++-+.......... -.......++.-+.+.+++++..+++....++-..+
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~--~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~ 332 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSE--TYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP 332 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcc--cchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc
Confidence 368999999999999999999999999998733211110 012345556666667777888888777777766543
No 327
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=60.48 E-value=63 Score=33.72 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=66.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHhcCC
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED------YPQLQFQAAWALTNIASGT 323 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~------~~~v~~~A~~~L~~l~~~~ 323 (684)
-...+.+.+.+++...+..|+..|+. + +.+. .++|.|+.++...- +-......+..+..|.. +
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~t----D-~gl~-----~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N 247 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRT----D-PGLQ-----QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-N 247 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcc----C-CCch-----hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-C
Confidence 45677777777777777777777655 2 1221 26788888886531 13444555666666666 5
Q ss_pred chhHHHHHhcCChHHHHHhcCC----------CChHHHHHHHHHHHHhhCC
Q 035507 324 SENTKVVIEHDAVPIFVKLLAS----------PSDDVREQAVWALGNVAAD 364 (684)
Q Consensus 324 ~~~~~~i~~~g~i~~Li~lL~~----------~~~~v~~~a~~~L~nLa~~ 364 (684)
+...-...-+..+|.++.++-+ .+..+|+.|+..|+.++..
T Consensus 248 ~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~ 298 (343)
T cd08050 248 PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRK 298 (343)
T ss_pred CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 5444333334478888876632 3368999999999999843
No 328
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=60.13 E-value=67 Score=28.50 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=57.1
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC-ChH---HHHHHHHHHHHHHhcc
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA-DPK---IVTVCLEGLENILKVG 620 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~-~~~---v~~~al~~L~~il~~~ 620 (684)
++..|.+-+.++++.++..|+..+-.++..+.+.....+.....++.|..++... ... |...++..+...-..-
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4566777788899999999999999999887777777777777888888887743 333 7888887777665543
No 329
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=59.87 E-value=2.1e+02 Score=29.43 Aligned_cols=179 Identities=13% Similarity=0.137 Sum_probs=103.1
Q ss_pred cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHH-Hhc---cC----CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCH
Q 035507 477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA-LLI---HN----HKNSIKKEVSWIISNIACGNREQIQAVIDAGLI 548 (684)
Q Consensus 477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~-lL~---~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l 548 (684)
++...++.+.......++.. . +....+|.++. +|. .. .++++-.-.+..+..+.....+.+..+++. ++
T Consensus 43 iKkeIL~Li~t~i~~~~~~~-~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPE-E-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-VF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HH-H-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhccCCHH-H-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-HH
Confidence 56667777777666554222 2 33457777766 332 11 144444444445555544334555556654 67
Q ss_pred HHHHHHhccC---CHhHHHHHHHHHHHhhcCC-------CHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507 549 GPLVNLLQNA---EFDIKEEAAWAISNASSRG-------THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK 618 (684)
Q Consensus 549 ~~Li~ll~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~ 618 (684)
...+.++..+ -|+.+..--..+.++.... .+++.+. +++.+...+++.++++...++.++..++.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 7777777654 4777777767676666522 2233333 56778888899999999999999999998
Q ss_pred cccccccCCCCCcchhHHHHHHHHhchHHH----HHHhhcCCCHHHHHHHHHHHHHhc
Q 035507 619 VGEAEKNTDSDIGDINQFAQLVEEAEGLEK----IENLQSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~----L~~L~~~~~~~i~~~a~~ii~~~f 672 (684)
...+.. ..+...+-+.-.++. +..+.........+.-..++..+|
T Consensus 195 ~~~~~~---------~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 195 NVSKTN---------PEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHH-S---------HHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHhcC---------HHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 766511 112333333333333 333444444555666667777777
No 330
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=59.52 E-value=44 Score=29.84 Aligned_cols=99 Identities=14% Similarity=0.051 Sum_probs=52.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHH
Q 035507 421 PALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII 500 (684)
Q Consensus 421 ~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i 500 (684)
..++.+|..+...-....+..|.+=...+-+ -...++++++..++.-=.....--...|+..||.+.-|..
T Consensus 25 ~~lielLk~~~~~~~~~lldLL~~RV~PGVD--~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------- 95 (154)
T PF11791_consen 25 AELIELLKNPPAGEEAFLLDLLTNRVPPGVD--EAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------- 95 (154)
T ss_dssp HHHHHHHHS--TT-HHHHHHHHHHSS--TT---HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-------
T ss_pred HHHHHHHhCCCCccHHHHHHHHHhcCCCCCC--hHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-------
Confidence 4455566554444444455555543311222 2233555555555443222233345678888888776654
Q ss_pred hcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 501 NHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 501 ~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
+..|+.+|.+. +..+...|+.+|++..-
T Consensus 96 ----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 ----VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 67899999888 88999999999998754
No 331
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.00 E-value=3.1e+02 Score=30.99 Aligned_cols=293 Identities=11% Similarity=0.075 Sum_probs=143.3
Q ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC--C-HHHHHHHHHHHHHHhcC--C
Q 035507 250 ILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED--Y-PQLQFQAAWALTNIASG--T 323 (684)
Q Consensus 250 ~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~--~-~~v~~~A~~~L~~l~~~--~ 323 (684)
.+....-.+.. +.+--+.-|..+|.++.++.. +.......++-..++.++.+.. . |-+...-+..++.+... .
T Consensus 39 clskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~ 117 (1082)
T KOG1410|consen 39 CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWF 117 (1082)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhcccc
Confidence 33444334443 346678888888999888765 2222334455667788887643 1 22333333444455441 1
Q ss_pred chhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHH
Q 035507 324 SENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSN 403 (684)
Q Consensus 324 ~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~n 403 (684)
..++...+-.+.+..+.+.|+.++.+-...++.+|..+..+-... +-.....--..+.....++.--++...++..|..
T Consensus 118 d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~-~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~ 196 (1082)
T KOG1410|consen 118 DQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQA-DGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKD 196 (1082)
T ss_pred ccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCC-CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 223333344467888888888877766666777777776321110 0000000011222222222223455555555555
Q ss_pred hccCCCCCChhhhhchHHHHHHH----hc-----CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCC
Q 035507 404 LCRGKPRPLFDQVRPALPALAQL----IH-----SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS 474 (684)
Q Consensus 404 L~~~~~~~~~~~~~~~l~~L~~l----L~-----~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~ 474 (684)
...-. -......+.+..++++ +. +.-++..++- +.. .-+...+..+.+...++.+..+..+-.
T Consensus 197 ~~~~n--lnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~----ctV--QIPTsWRs~f~d~stlqlfFdly~slp 268 (1082)
T KOG1410|consen 197 NVDLN--LNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDL----CTV--QIPTSWRSSFLDSSTLQLFFDLYHSLP 268 (1082)
T ss_pred hcccC--cccHhHhhHHHHHHHHHhhhccccccccccccccccc----cce--ecCcHHHHHhcCchHHHHHHHHhccCC
Confidence 44221 1111112222222222 21 1111111111 111 123345666777788899999998888
Q ss_pred cccHhHHHHHHHHHHcCC-----hhhHHHHHhcCChHHHHHHhccCC---ChhHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 035507 475 PSVLTPALWTVGNIVMGD-----DFQTQCIINHGAVPCLLALLIHNH---KNSIKKEVSWIISNIACGNREQIQAVIDAG 546 (684)
Q Consensus 475 ~~v~~~al~~L~nl~~~~-----~~~~~~~i~~g~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g 546 (684)
+.....|+.+|..++... +..++..+ ...+.-...++..+. |+.--.+-|..|+.+-.. -+...++...
T Consensus 269 ~~~S~~alsclvqlASvRRsLFN~aeRa~yl-~~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlktN--YQL~ELv~v~ 345 (1082)
T KOG1410|consen 269 PELSELALSCLVQLASVRRSLFNGAERAKYL-QHLVEGVKRILENPQGLSDPANYHEFCRLLARLKTN--YQLGELVKVE 345 (1082)
T ss_pred chhhHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHhh--hhhHhhhccC
Confidence 889999999999987521 11111111 123444445554442 444444555555555321 3344444444
Q ss_pred CHHHHHHHh
Q 035507 547 LIGPLVNLL 555 (684)
Q Consensus 547 ~l~~Li~ll 555 (684)
..|..++++
T Consensus 346 ~Y~e~irLi 354 (1082)
T KOG1410|consen 346 CYPEVIRLI 354 (1082)
T ss_pred CcHHHHHHH
Confidence 455555544
No 332
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=58.53 E-value=96 Score=27.28 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhcCC-chhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHH
Q 035507 306 PQLQFQAAWALTNIASGT-SENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384 (684)
Q Consensus 306 ~~v~~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~ 384 (684)
+-++.+.+.++..++..+ |+. -.+.++.+++++.+ ++.-.+..+.+|..+..+-...++..
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~-----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~------------ 63 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQ-----WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSS------------ 63 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-----STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCH------------
T ss_pred hhHHHHHHHHHHHHHHHHChhh-----CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchh------------
Confidence 356777778888887622 111 12457777887777 45666667777777653321110000
Q ss_pred hccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCC----cHHHHHHHHHHHHhhccCCChHHHHHHHHh
Q 035507 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSN----DEQVLTDACWALFGLSGDRNNDKIQAVIEA 460 (684)
Q Consensus 385 L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~----d~~v~~~al~~L~~L~~~~~~~~~~~~~~~ 460 (684)
....-+...-.++..- ...++..+.+.+... +.++...++.++.... . --....+.+.
T Consensus 64 ----~~~~r~~~l~~~l~~~-----------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i-~--~~~~~~i~~~ 125 (148)
T PF08389_consen 64 ----LSQERRRELKDALRSN-----------SPDILEILSQILSQSSSEANEELVKAALKCLKSWI-S--WIPIELIINS 125 (148)
T ss_dssp ----SHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHT-T--TS-HHHHHSS
T ss_pred ----hhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH-H--hCCHHHhccH
Confidence 0001111111111111 123344444444432 2788899999998887 3 3345566777
Q ss_pred chHHHHHHhcCCCCcccHhHHHHHH
Q 035507 461 GVCGRLVELLGHPSPSVLTPALWTV 485 (684)
Q Consensus 461 g~l~~L~~lL~~~~~~v~~~al~~L 485 (684)
++++.+.+++. ++..+..|+.+|
T Consensus 126 ~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 126 NLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp SHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHcC--CHHHHHHHHHhC
Confidence 89999999994 445688888775
No 333
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.49 E-value=3.7 Score=38.51 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=40.8
Q ss_pred hccccccCCccccccccCccccccCCccceeeccCcccccccc-cccCcccchhhhhc
Q 035507 137 EKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSR-GELSAPMLHKVQLK 193 (684)
Q Consensus 137 l~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~Cp~l~~~~~-~~~~~~~l~~~~~~ 193 (684)
+++|+|.+..++.-+|.+-..-.+|+|+.|.+.+||+..-+-- ....-++|+..++.
T Consensus 127 i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 127 IKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred hhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 4677777777777778775445999999999999999873211 12445677666665
No 334
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=57.46 E-value=26 Score=25.01 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=30.3
Q ss_pred HHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHHh
Q 035507 637 AQLVEEAEGLEKIENLQSH-DNNEIHEKSVKILETY 671 (684)
Q Consensus 637 ~~~i~~~g~~~~L~~L~~~-~~~~i~~~a~~ii~~~ 671 (684)
.+.+.+.|.-..+..|..| ++++|.+.|..++++.
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4778889988999999888 9999999999999875
No 335
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=57.23 E-value=1.2e+02 Score=33.44 Aligned_cols=173 Identities=10% Similarity=0.017 Sum_probs=95.2
Q ss_pred CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc--c--------CCchHHHHHHHHHHHHhccCCCCCChh
Q 035507 345 SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN--E--------HTELSMLRIATTTLSNLCRGKPRPLFD 414 (684)
Q Consensus 345 ~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~--~--------~~~~~v~~~a~~~L~nL~~~~~~~~~~ 414 (684)
+++.+|...|-..|-.+..+-+ +...+..|+.+.. . ..++.++...+ ..||+.. ....
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL---~~L~kS~--~Aa~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKIL---SLLSKSV--IAAT 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHH---HHHHHhH--HHHh
Confidence 3556677777777777664411 2223455555543 1 12334444443 3333331 0011
Q ss_pred hhhchHHHHHHHhcCC--cHHHHHHHHHHH---HhhccCCChHHHHHHHHhchHHHHHHhcC--------CCCcccHhHH
Q 035507 415 QVRPALPALAQLIHSN--DEQVLTDACWAL---FGLSGDRNNDKIQAVIEAGVCGRLVELLG--------HPSPSVLTPA 481 (684)
Q Consensus 415 ~~~~~l~~L~~lL~~~--d~~v~~~al~~L---~~L~~~~~~~~~~~~~~~g~l~~L~~lL~--------~~~~~v~~~a 481 (684)
....++..+..-+.+. +..++..++..+ ............+ .+...+...+.+++. ..+...|..+
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILK-LLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHH-HHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 1134444555555555 456666665555 4444122222222 222222333333332 2356788889
Q ss_pred HHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 482 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 482 l~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
-.+||.++...+.... -+-+.+..|..-|..+ .++++...-.+|+.++.
T Consensus 395 Ye~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~-~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 395 YETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDE-SPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHccCccccc--ccHHHHHHHHHHhhCc-chHHHHHHHHHHHHHHH
Confidence 9999999988875431 1345788888888777 88999999999998875
No 336
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=57.06 E-value=1e+02 Score=40.51 Aligned_cols=228 Identities=15% Similarity=0.111 Sum_probs=118.0
Q ss_pred HhcCCCChHHHHHHHHHHHHhhCCCCCCchh---Hh--hcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhh
Q 035507 341 KLLASPSDDVREQAVWALGNVAADSSGCRDL---VL--SEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQ 415 (684)
Q Consensus 341 ~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~---i~--~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~ 415 (684)
..+...+++++..+...+.-+......+++. .. ....+..+..+-..++++.++......+. . .......
T Consensus 488 ~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~--~~~~~la 562 (2341)
T KOG0891|consen 488 SYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---E--RFDAQLA 562 (2341)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---c--chhhhhc
Confidence 3455677888888866666554333221111 01 11123333333334455554433322222 0 0111111
Q ss_pred hhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh
Q 035507 416 VRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 495 (684)
Q Consensus 416 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 495 (684)
....+..+...+++..-.++..+...+++++ +.++...-..+..-.+..+-++..+....+......-+..+..+.+..
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~-~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLS-SYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccc-cccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 2334444555666777788889999999998 766643333333323333333333332222222222333333333322
Q ss_pred HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CHhHHHHHHHHHHHhh
Q 035507 496 TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EFDIKEEAAWAISNAS 574 (684)
Q Consensus 496 ~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~ 574 (684)
....+ ...+..++..+.++ +..+.+.+..+++.++..+.+......+ ..++.+.+.+.+. +..-+..+.+++.++.
T Consensus 642 i~~~v-~~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 642 ISPYV-GPILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHhhc-CchHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 22222 24556777777787 7788899999999998744333333334 4566666666544 4555677789999998
Q ss_pred cCC
Q 035507 575 SRG 577 (684)
Q Consensus 575 ~~~ 577 (684)
...
T Consensus 719 s~~ 721 (2341)
T KOG0891|consen 719 SST 721 (2341)
T ss_pred ccc
Confidence 743
No 337
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=56.80 E-value=99 Score=33.85 Aligned_cols=86 Identities=16% Similarity=0.214 Sum_probs=60.3
Q ss_pred HHHHHHHHhCCHHHHHHHhccC-CHhHHHHHHHHHHHhhcCC------------CHHHHHHHHHCCChHHHHhhccC-CC
Q 035507 537 EQIQAVIDAGLIGPLVNLLQNA-EFDIKEEAAWAISNASSRG------------THDQIKYLVTEGCIKPLCDLLQC-AD 602 (684)
Q Consensus 537 ~~~~~l~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~------------~~~~~~~l~~~g~l~~L~~lL~~-~~ 602 (684)
..++-+.+.++++.|+..|... +.+++..|+..|+.++.-. ..+..+.|.....+..|++.+-. ..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 4445556789999999999854 7889999998888776522 13456677777788888876542 33
Q ss_pred hHHHHHHHHHHHHHHhcccc
Q 035507 603 PKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 603 ~~v~~~al~~L~~il~~~~~ 622 (684)
......++.++..+++....
T Consensus 133 ~s~lvn~v~IlieLIRknns 152 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKNNS 152 (475)
T ss_pred cchHHHHHHHHHHHHHhccc
Confidence 55666777777777765533
No 338
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=56.68 E-value=3e+02 Score=30.07 Aligned_cols=274 Identities=15% Similarity=0.107 Sum_probs=125.6
Q ss_pred HHHHHHHhc-CCCH-HHHHHHHHHHHHHhcCCCCcHH---HHH--------HcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 035507 251 LPMMVAGVW-SDDN-NLQLEATTQFQKLLSIESMPIE---EVI--------ESGVVPRFVEFLMREDYPQLQFQAAWALT 317 (684)
Q Consensus 251 l~~lv~~L~-s~~~-~~~~~a~~~L~~l~s~~~~~~~---~ii--------~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~ 317 (684)
+|.-++.+- .+.| ..+++|+..+..+.-.+...++ +.+ -..+|..+.+.++.+..--+|..|+|.|+
T Consensus 44 l~~w~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQlkse~~~ss~~q~~lnevir~ltqvis~sg~iglQsn~~wlLG 123 (589)
T PF11229_consen 44 LPAWIKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLNEVIRTLTQVISFSGVIGLQSNAAWLLG 123 (589)
T ss_pred HHHHHHHHHhcCCcHHHHHHHhhchhheeccccceeeehhhcccCHHHHHHHHHHHHHHHHHHcCccccccccchHHHHH
Confidence 444444333 3334 3455666666665544331111 111 12356677777766554678999999998
Q ss_pred HHhcC--Cchh--------HHHHHhcCChHHHHHhcCC----CC----hHHHHHHHHHHHHhhCCCCC-CchhHhhcCCH
Q 035507 318 NIASG--TSEN--------TKVVIEHDAVPIFVKLLAS----PS----DDVREQAVWALGNVAADSSG-CRDLVLSEGAL 378 (684)
Q Consensus 318 ~l~~~--~~~~--------~~~i~~~g~i~~Li~lL~~----~~----~~v~~~a~~~L~nLa~~~~~-~r~~i~~~g~l 378 (684)
.+--. +..+ -..+-+..+|...+.++-. +. +.....++..+.......+. ..+- .-.+
T Consensus 124 hLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkvvl~~ia~vgeS~qyPPVNW---aalL 200 (589)
T PF11229_consen 124 HLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKVVLKPIATVGESYQYPPVNW---AALL 200 (589)
T ss_pred HHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHHHHHHhhhcCCCCCCCCccH---HHHh
Confidence 76431 1111 1122233445555554422 22 22333333333332211110 0000 1123
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHH
Q 035507 379 IPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVI 458 (684)
Q Consensus 379 ~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~ 458 (684)
.||+++ +...+++..++..-..=+..........-.-+.|.++ .+-+...+...+..+.-.....++++.+.++
T Consensus 201 sPLMRl---nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli---~sLs~~tk~~L~~Sl~~wmkhVsedqiQ~Fv 274 (589)
T PF11229_consen 201 SPLMRL---NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLI---HSLSVNTKKYLFESLSLWMKHVSEDQIQAFV 274 (589)
T ss_pred hHHHhc---cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchh---hhhhHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 444443 3356676666544333332221111111122233333 2334455556555555444345677777777
Q ss_pred HhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHh--cCChHHHHHHhccC-C--ChhHHHHHHHHHHHHhc
Q 035507 459 EAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN--HGAVPCLLALLIHN-H--KNSIKKEVSWIISNIAC 533 (684)
Q Consensus 459 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~--~g~l~~L~~lL~~~-~--~~~v~~~a~~~L~nl~~ 533 (684)
+.-++..+-..-...++.+...|+.-+..-....+ -.+.... +.....+..++-+. . +-++-...+.+|+.++.
T Consensus 275 e~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~-P~~h~Ws~Lc~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 275 ENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPS-PAQHCWSLLCETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhhcCH
Confidence 65444444333334567778888887777443332 2222222 34455555655222 0 33344445666666654
Q ss_pred C
Q 035507 534 G 534 (684)
Q Consensus 534 ~ 534 (684)
.
T Consensus 354 ~ 354 (589)
T PF11229_consen 354 T 354 (589)
T ss_pred H
Confidence 3
No 339
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=56.50 E-value=78 Score=36.54 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=99.4
Q ss_pred CcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHHHhcCCchhHHHHHhc--------CChHHHHHhcCC-
Q 035507 282 MPIEEVIESGVVPRFVEFLMRED-------YPQLQFQAAWALTNIASGTSENTKVVIEH--------DAVPIFVKLLAS- 345 (684)
Q Consensus 282 ~~~~~ii~~g~i~~Lv~lL~~~~-------~~~v~~~A~~~L~~l~~~~~~~~~~i~~~--------g~i~~Li~lL~~- 345 (684)
++.+.+...+.+..++++...+. ..+....|+.+|.-+.. -|..+..++.+ .+|..++..-..
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 56667777788888888775431 13556667777766665 45555444421 245555543221
Q ss_pred ---CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCH--HHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchH
Q 035507 346 ---PSDDVREQAVWALGNVAADSSGCRDLVLSEGAL--IPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPAL 420 (684)
Q Consensus 346 ---~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l--~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l 420 (684)
.+++++..|+.++-|.....|.+|...+..-+- ..=-..+...+......+.+.-.++-.++ ..++
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndGI 741 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDGI 741 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------CccH
Confidence 379999999999999998887776543311000 00000111223333444444444454444 4678
Q ss_pred HHHHHHhcCC-----cHHHHHHHHHHHHhhccCCChHHHHHHHHh
Q 035507 421 PALAQLIHSN-----DEQVLTDACWALFGLSGDRNNDKIQAVIEA 460 (684)
Q Consensus 421 ~~L~~lL~~~-----d~~v~~~al~~L~~L~~~~~~~~~~~~~~~ 460 (684)
.+|+++|+.. -..++.-||.+|.-|+ .++..++.+.+.
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLa--R~~tVrQIltKL 784 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLA--RDDTVRQILTKL 784 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccc--cCcHHHHHHHhC
Confidence 8889998754 3578899999999998 445555555443
No 340
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.92 E-value=3.6e+02 Score=31.70 Aligned_cols=177 Identities=12% Similarity=0.088 Sum_probs=87.7
Q ss_pred hchHHHHHHHhcC-CcHHHHHHHHHHHHhhccC-----CChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHc
Q 035507 417 RPALPALAQLIHS-NDEQVLTDACWALFGLSGD-----RNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490 (684)
Q Consensus 417 ~~~l~~L~~lL~~-~d~~v~~~al~~L~~L~~~-----~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 490 (684)
...++.++.++.. .+++++..|-..|..++.- +++.....+...+.+..|+..+-.+. ......+..+.-+.+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~-~s~s~lVs~i~vlI~ 267 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDG-TSLSVLVSGIIVLIS 267 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCC-cchhhHHHHHHHHHH
Confidence 6688889988874 4678888888887777722 45556666777777777776654422 112222222222222
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCC---ChhHHHHHHHHHHHHhcCChHHHHHHHHhC---CHHHHHHHhccCCHhHHH
Q 035507 491 GDDFQTQCIINHGAVPCLLALLIHNH---KNSIKKEVSWIISNIACGNREQIQAVIDAG---LIGPLVNLLQNAEFDIKE 564 (684)
Q Consensus 491 ~~~~~~~~~i~~g~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g---~l~~Li~ll~~~~~~v~~ 564 (684)
-....+..+ . + +....++.++. ++.+......++..-. .+..+.+.+.. .++.=...+..+=...|.
T Consensus 268 ll~~~r~~~-~-~--~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rl 340 (838)
T KOG2073|consen 268 LLNPRRDTV-E-T--NSTTTILSQPPSERDPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERL 340 (838)
T ss_pred hcCcccccc-c-c--cceeeeecCCccccCccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHH
Confidence 111111100 0 0 00012221110 3333333333332211 11111111111 222222223333345677
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 035507 565 EAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA 601 (684)
Q Consensus 565 ~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~ 601 (684)
..+..+..+....+......+...++++.+.++....
T Consensus 341 ki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 341 KIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred HHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 7788888888777777777777777777777766643
No 341
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=55.66 E-value=1.5e+02 Score=29.74 Aligned_cols=62 Identities=19% Similarity=0.082 Sum_probs=41.8
Q ss_pred CHhHHHHHHHHHHHhhcCCC---------------HHHHHHHHHCCChHHHHhhccCC-ChHHHHHHHHHHHHHHhcc
Q 035507 559 EFDIKEEAAWAISNASSRGT---------------HDQIKYLVTEGCIKPLCDLLQCA-DPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 559 ~~~v~~~a~~aL~nl~~~~~---------------~~~~~~l~~~g~l~~L~~lL~~~-~~~v~~~al~~L~~il~~~ 620 (684)
+..+.+.+...+.|+..-.+ ......|.+.|+.+.|..+..+. ..+....+++++..+++..
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 44455666677777765311 22345567899999999988875 4445558888888888754
No 342
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=54.23 E-value=1.4e+02 Score=30.62 Aligned_cols=155 Identities=12% Similarity=0.077 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHHHHhcC-----------ChHHHHHhcC------CCChHHHHHHHHHHHHhhCCCCC
Q 035507 305 YPQLQFQAAWALTNIASGTSENTKVVIEHD-----------AVPIFVKLLA------SPSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 305 ~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g-----------~i~~Li~lL~------~~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
.-++|.+|+.++.....++++.+..+++.- ....++..|- +.++--.-.|+.+|..+..+++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 368999999999999998998888777531 0112222222 11221122344444444444433
Q ss_pred CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc-----CCcHHHHHHHHHHH
Q 035507 368 CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH-----SNDEQVLTDACWAL 442 (684)
Q Consensus 368 ~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~al~~L 442 (684)
.++.+.. . ..+. ...-......++.+..+|. ..|+.++..-+..|
T Consensus 131 ~Ke~al~-------------------------V----~~~~-~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL 180 (312)
T PF04869_consen 131 AKEQALR-------------------------V----TEGD-ESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLL 180 (312)
T ss_dssp HHHHHTT-------------------------------EE---STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHH
T ss_pred HHHHHHc-------------------------c----cCCC-CCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence 3322221 1 0000 0000111223344443332 44677777777777
Q ss_pred HhhccCCChHHHHHHHHh-chHHHHHHhcCC---CCcccHhHHHHHHHHHHc
Q 035507 443 FGLSGDRNNDKIQAVIEA-GVCGRLVELLGH---PSPSVLTPALWTVGNIVM 490 (684)
Q Consensus 443 ~~L~~~~~~~~~~~~~~~-g~l~~L~~lL~~---~~~~v~~~al~~L~nl~~ 490 (684)
..-. ..++.....++.. +.++.|+..... .+.-++--++..||-.-.
T Consensus 181 ~~WL-~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 181 IVWL-FECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHH-TT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHH-hCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 7666 5666676667666 478888887533 233444445555555443
No 343
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.88 E-value=89 Score=36.81 Aligned_cols=287 Identities=18% Similarity=0.157 Sum_probs=152.3
Q ss_pred hhccHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507 247 KLEILPMMVA-GVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 247 ~~~~l~~lv~-~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
+++++..+-. +|++.+.++|...+..+.++.+.++++....-+.--+|.++.-+..-. ..+|...+.+|-.-..
T Consensus 464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVt---- 538 (2799)
T KOG1788|consen 464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVT---- 538 (2799)
T ss_pred chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHh----
Confidence 3444444444 456788888888899999988888777776667778888888887655 4677665555432221
Q ss_pred hHHHHHhcCC---hHHHHHhcCCC-ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC-----CchHHHHH
Q 035507 326 NTKVVIEHDA---VPIFVKLLASP-SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH-----TELSMLRI 396 (684)
Q Consensus 326 ~~~~i~~~g~---i~~Li~lL~~~-~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~-----~~~~v~~~ 396 (684)
+++.-- +-.|+-+|+.+ ...+....+.....+...+..+++.+.+.|.+..|-..+.++ +|.-
T Consensus 539 ----vvncvPeqELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy---- 610 (2799)
T KOG1788|consen 539 ----VVNCVPEQELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY---- 610 (2799)
T ss_pred ----hhccCcHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh----
Confidence 111100 22345566664 334444555555566666666777888888888877666432 1110
Q ss_pred HHHHHHHhccCCCCC-Chhh---hhchHHHHHHHhcCC---cHH--H---HHHHHHHHHhhccCCChHHHHHHHHhchHH
Q 035507 397 ATTTLSNLCRGKPRP-LFDQ---VRPALPALAQLIHSN---DEQ--V---LTDACWALFGLSGDRNNDKIQAVIEAGVCG 464 (684)
Q Consensus 397 a~~~L~nL~~~~~~~-~~~~---~~~~l~~L~~lL~~~---d~~--v---~~~al~~L~~L~~~~~~~~~~~~~~~g~l~ 464 (684)
.-.+......+.. .+.. ....+-.--.++.++ ++- + ..-...+|..+. .++.++...+.++.++.
T Consensus 611 --sgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisll-KnnteNqklFreanGvk 687 (2799)
T KOG1788|consen 611 --SGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLL-KNNTENQKLFREANGVK 687 (2799)
T ss_pred --hhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHH-hccchhhHHHHhhcCce
Confidence 0011111111111 0000 011111111122221 110 0 111234555566 66777777788887777
Q ss_pred HHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCC-----------ChhHHHHHHHHHHHHhc
Q 035507 465 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-----------KNSIKKEVSWIISNIAC 533 (684)
Q Consensus 465 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-----------~~~v~~~a~~~L~nl~~ 533 (684)
.++.++- ++.-|...++++..+....+.+.. +.-+-.++..|+++. ..........++..+..
T Consensus 688 lilpfli--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivg 761 (2799)
T KOG1788|consen 688 LILPFLI--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVG 761 (2799)
T ss_pred EEEEeee--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHc
Confidence 7777773 445678888888888776665322 112334455554420 11234444555555554
Q ss_pred CChHHHHHHHHhCCHHHHHHHh
Q 035507 534 GNREQIQAVIDAGLIGPLVNLL 555 (684)
Q Consensus 534 ~~~~~~~~l~~~g~l~~Li~ll 555 (684)
-+......+-+++.+..|...|
T Consensus 762 vngsaqrvFgeatGFslLlttL 783 (2799)
T KOG1788|consen 762 VNGSAQRVFGEATGFSLLLTTL 783 (2799)
T ss_pred cCchheeehhccccHHHHHHHH
Confidence 3323333355666666666655
No 344
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.67 E-value=1.6e+02 Score=30.90 Aligned_cols=131 Identities=13% Similarity=0.168 Sum_probs=89.2
Q ss_pred HHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHH
Q 035507 463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQA 541 (684)
Q Consensus 463 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~ 541 (684)
+.-|+..+.+.+..++..|+..+..+....+...+.- -..+++.+..+..+. +..+|......+-++... .++....
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhcc
Confidence 4567778899999999999999988876655333211 123667777777777 888999988888886542 2333222
Q ss_pred HHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 035507 542 VIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL 598 (684)
Q Consensus 542 l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL 598 (684)
++ .=+++.+...|....++++..+...+.-++....+....+... +++-+.+++
T Consensus 138 ~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i 191 (393)
T KOG2149|consen 138 MV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVI 191 (393)
T ss_pred hH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHH
Confidence 22 2357777778888899999999999999887665555444333 444444443
No 345
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=52.40 E-value=60 Score=25.30 Aligned_cols=35 Identities=17% Similarity=0.436 Sum_probs=30.6
Q ss_pred HHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507 637 AQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY 671 (684)
Q Consensus 637 ~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~ 671 (684)
.+.+.+.+.-..+..|..|++++|...|..++..+
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 46788888888899999999999999999999865
No 346
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=52.02 E-value=2.2e+02 Score=30.86 Aligned_cols=265 Identities=10% Similarity=0.083 Sum_probs=119.9
Q ss_pred CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC----CCCChhhhhchHH
Q 035507 346 PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK----PRPLFDQVRPALP 421 (684)
Q Consensus 346 ~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~----~~~~~~~~~~~l~ 421 (684)
+|+-+-...++++..+-..-......+... .+..+.....+.+++..-.....+++.+.+.. +.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 455565556666555433322222222211 12222222334456666666666666665543 2222345578889
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhhccCCCh-HHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHH
Q 035507 422 ALAQLIHSNDEQVLTDACWALFGLSGDRNN-DKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII 500 (684)
Q Consensus 422 ~L~~lL~~~d~~v~~~al~~L~~L~~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i 500 (684)
.+...|..+-.+..-.+...++.+. +... ....... ..+++.|+.-.-.....-.-+..+.|..+....+... .
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Ll-e~~~~~~~p~~y-~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i---~ 195 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLL-ELRPSSPLPDAY-KQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI---V 195 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHH-HHSS--S--TTT-GGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCcHHH-HHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---c
Confidence 9999999887888888888888887 3322 1111000 1233333322111222223445566666655444322 2
Q ss_pred hcC----ChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhcc-CCHhHHHHHHHHHHHhh
Q 035507 501 NHG----AVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQN-AEFDIKEEAAWAISNAS 574 (684)
Q Consensus 501 ~~g----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~-~~~~v~~~a~~aL~nl~ 574 (684)
..+ ++..+-+++.+. .. -..+...|..+... ..+..+..+.. ++..++.-|++ ...+.++..+..++.++
T Consensus 196 ~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~~~~ 271 (435)
T PF03378_consen 196 ANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLSLFA 271 (435)
T ss_dssp --S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHHHHH
Confidence 222 344444566555 22 24566677777653 22333333322 44455554553 46666666666666555
Q ss_pred cCCCHHHHHHHHH---CCChHHHHhhc------cCCChHHHHHHHHHHHHHHhcc
Q 035507 575 SRGTHDQIKYLVT---EGCIKPLCDLL------QCADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 575 ~~~~~~~~~~l~~---~g~l~~L~~lL------~~~~~~v~~~al~~L~~il~~~ 620 (684)
...+++.....++ .|+...+..-+ +-..+.=++.+.-++.+++...
T Consensus 272 ~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 272 IKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 4334444433333 33333333311 1123333555566677766543
No 347
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.55 E-value=89 Score=36.50 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=64.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHH---hcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKL---LSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l---~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
..+.....+|.+.+..+|.+|+..+.-- +...+ +.-.-.-...-|.+++.+...+ +-+...|+.++.+++....+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~-n~LlPlvhq~W~~vie~~~~k~-~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYH-NLLLPLVHQTWPSVIECLLCKD-PLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccc-hhHhHHHHhhhhHHHHHHhcCc-hHHHHHHHHHHHHHHHHhhh
Confidence 3566777788889999999999888642 22222 1111122346788888888888 89999999999999986555
Q ss_pred hHHHHHhcCChHHHHHhcC
Q 035507 326 NTKVVIEHDAVPIFVKLLA 344 (684)
Q Consensus 326 ~~~~i~~~g~i~~Li~lL~ 344 (684)
....-+-..++|.+-.++.
T Consensus 881 Fv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5544444566777766553
No 348
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=50.51 E-value=9.6 Score=41.64 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=55.1
Q ss_pred CCCccccccccceeEEEeeeeeccccc--eecceeeeeccccchhHHHHHhhccccceeeecCCCchhhHHHHHHHHhhh
Q 035507 8 NLPRGLFFEKLERYRILIGYFWNRKYN--IYSRDFRIELNTKVCLKDVLIVQLRGIEHLGLEGLQEQDVQNFVNELVKLQ 85 (684)
Q Consensus 8 ~~p~~~~~~~l~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~ 85 (684)
-||+++-..+|.=-.=.|++.....+. -.-.+++++.+..+.|..-..+.||+|+.|.+.--.+ .-.+-+. -+
T Consensus 168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i----rive~lt-Fq 242 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI----RIVEGLT-FQ 242 (873)
T ss_pred CCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce----eeehhhh-hc
Confidence 377765444433211122333333333 1445567777778888888899999999886532211 1111112 23
Q ss_pred CCCCCcEEEec-CcccCCCccccccccccccc
Q 035507 86 GSSQLKHLYIS-GSRLALNPEESERPEKLSYD 116 (684)
Q Consensus 86 ~~~~l~~l~~~-~~~~~l~~~~~~~c~~le~i 116 (684)
+.+.|++|... +-.+-|+-..-+-|++||++
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeeccccee
Confidence 34444444322 22233667777778888874
No 349
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=50.32 E-value=34 Score=27.46 Aligned_cols=71 Identities=10% Similarity=0.141 Sum_probs=46.3
Q ss_pred hhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHH
Q 035507 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALF 443 (684)
Q Consensus 373 ~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~ 443 (684)
.+...+.|+...+....+.+++...+.++.++..............++..+.....++++++...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34456888888887788999999999999999876532222222333444444444566777777666553
No 350
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.04 E-value=4.7e+02 Score=30.41 Aligned_cols=315 Identities=13% Similarity=0.176 Sum_probs=161.1
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHhcCCC----CcHHHHHHc--CCH-HHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 035507 253 MMVAGVWSD--DNNLQLEATTQFQKLLSIES----MPIEEVIES--GVV-PRFVEFLMREDYPQLQFQAAWALTNIASGT 323 (684)
Q Consensus 253 ~lv~~L~s~--~~~~~~~a~~~L~~l~s~~~----~~~~~ii~~--g~i-~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~ 323 (684)
.+++.+.++ |+.++.+|+..+.+-+.++- +....+.+. ..+ ..++.++-+.. ..+|.+--.+|+-++..+
T Consensus 41 ~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~D 119 (960)
T KOG1992|consen 41 LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKRD 119 (960)
T ss_pred HHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhccc
Confidence 455555543 57889999999998877433 111122222 122 33455555555 689999999999999632
Q ss_pred -chhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhh-CCCCCCchhHh--h----cC-CHHHHHHHhcc-------
Q 035507 324 -SENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVA-ADSSGCRDLVL--S----EG-ALIPLLAQLNE------- 387 (684)
Q Consensus 324 -~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa-~~~~~~r~~i~--~----~g-~l~~Ll~~L~~------- 387 (684)
|+... ..+|.|+.-+++.|-.+-..++..-..+- +..+.+|..-+ + .+ .-.|+..++.+
T Consensus 120 FP~kWp-----tLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~ 194 (960)
T KOG1992|consen 120 FPDKWP-----TLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQR 194 (960)
T ss_pred cchhhH-----HHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh
Confidence 22222 34677777777766555444444444344 22222222110 0 00 11233333321
Q ss_pred -CCchHHHH-------HHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcCCc-------------HHHHHHHHHHHHhh
Q 035507 388 -HTELSMLR-------IATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSND-------------EQVLTDACWALFGL 445 (684)
Q Consensus 388 -~~~~~v~~-------~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d-------------~~v~~~al~~L~~L 445 (684)
..+..... -.+.....|+.-+ |.--.......++...+++..++ ..++...|..+.--
T Consensus 195 ~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY 274 (960)
T KOG1992|consen 195 HANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLY 274 (960)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHH
Confidence 11222122 2222334444433 33333345667777777776322 24556677777665
Q ss_pred ccCCChHHHHHHHHhchHHHHHHhcCCCC-----cccHhHHHHHHHHHHcCChh--------hHH---------------
Q 035507 446 SGDRNNDKIQAVIEAGVCGRLVELLGHPS-----PSVLTPALWTVGNIVMGDDF--------QTQ--------------- 497 (684)
Q Consensus 446 ~~~~~~~~~~~~~~~g~l~~L~~lL~~~~-----~~v~~~al~~L~nl~~~~~~--------~~~--------------- 497 (684)
+ ...++..+.++. .++...-.+|.+.. +.....|+..|.+++..... ...
T Consensus 275 ~-~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~ 352 (960)
T KOG1992|consen 275 A-TKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILRE 352 (960)
T ss_pred H-HhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccch
Confidence 5 455555553333 23444445554422 33455677777777653321 111
Q ss_pred ---HHHhcCChHHHHHHhccCCChhH-HHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHH-HhccC--CHhHHHHHHHHH
Q 035507 498 ---CIINHGAVPCLLALLIHNHKNSI-KKEVSWIISNIACGNREQIQAVIDAGLIGPLVN-LLQNA--EFDIKEEAAWAI 570 (684)
Q Consensus 498 ---~~i~~g~l~~L~~lL~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~-ll~~~--~~~v~~~a~~aL 570 (684)
.+.+..-+..+..-|... |.+. |+.|+..+.-++.....++..++... +..++. ...++ +..-+..|...+
T Consensus 353 eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~-v~~~l~~y~~nPS~nWk~kd~aiyL~ 430 (960)
T KOG1992|consen 353 EDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE-VQRLLDQYSKNPSGNWKKKDRAIYLV 430 (960)
T ss_pred hhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHhccCCCccccccchhhhhh
Confidence 112223455555666655 5444 56677788888876655555555442 333333 33333 555566677777
Q ss_pred HHhhcCC
Q 035507 571 SNASSRG 577 (684)
Q Consensus 571 ~nl~~~~ 577 (684)
..++..+
T Consensus 431 talaik~ 437 (960)
T KOG1992|consen 431 TALAIKG 437 (960)
T ss_pred HHHHhhc
Confidence 7776543
No 351
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.77 E-value=1.5e+02 Score=31.13 Aligned_cols=115 Identities=13% Similarity=0.159 Sum_probs=81.3
Q ss_pred ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHH
Q 035507 504 AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIK 583 (684)
Q Consensus 504 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 583 (684)
-+..|+..+.+. +..+|+.|...+..+....+...+.-. ..+++.+..+..+.+..+|.....++-.+.....++...
T Consensus 59 tlkeLl~qlkHh-NakvRkdal~glkd~l~s~p~~l~~~~-~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHH-NAKVRKDALNGLKDLLKSHPAELQSHL-YALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCc-hHhhhHHHHHHHHHHHHhChHHHHHHH-HHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 366788888888 999999999999888765545444222 346788888888889999999988888876644444322
Q ss_pred HHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 584 YLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 584 ~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
.++. =+...+...+.+..++++.-++..+..++....
T Consensus 137 p~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 137 PMVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred chHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 2111 134555556677888888888888888877653
No 352
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=48.78 E-value=2.1e+02 Score=34.79 Aligned_cols=175 Identities=13% Similarity=0.075 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc
Q 035507 391 LSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL 470 (684)
Q Consensus 391 ~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL 470 (684)
..++..++|+|..+..... .......+..+.+++..+..+++.-.+..+.|.. ..-.+... ..-.-+++..+.-|
T Consensus 143 apVre~caq~L~~~l~~~~---~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~-air~d~l~-~~~~~vl~~~i~~L 217 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMD---ESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNV-AIRQDLLF-QLLNLVLDFVIEGL 217 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhh---hHhhHHHHHHHHHHHcCcchhheechHHHHHHHH-HHHHHHHH-HHHHHHHHHHHhhh
Confidence 3577888888888776642 2233456666777777777777766666666555 11111111 11113566677778
Q ss_pred CCCCcccHhHHHHHHHHHHcCChh-hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH----HhcCChHHHHHHH--
Q 035507 471 GHPSPSVLTPALWTVGNIVMGDDF-QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN----IACGNREQIQAVI-- 543 (684)
Q Consensus 471 ~~~~~~v~~~al~~L~nl~~~~~~-~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n----l~~~~~~~~~~l~-- 543 (684)
.+.+.+++..|...+.-++..... ..+.+. .++..+...+..- +. +- .+...+.+ ++... ....+.
T Consensus 218 ~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~l-dd-l~-~s~~si~~ll~~l~~~~--evl~l~~~ 290 (1549)
T KOG0392|consen 218 EDSDDDVRSVAAQFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLEL-DD-LS-SSTASIMHLLDELCIEN--EVLDLFEQ 290 (1549)
T ss_pred hhcchHHHHHHHHHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHh-hh-cc-hhhHHHHHHHHHHhhhH--HHHHHHHH
Confidence 888889999988888776654321 111111 1233333333222 11 11 11111222 22221 122222
Q ss_pred ---HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC
Q 035507 544 ---DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG 577 (684)
Q Consensus 544 ---~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~ 577 (684)
+.|++|.+...+.+.-..++..++..+..+....
T Consensus 291 ~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 291 QNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3578888888888877788888888888887643
No 353
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=46.74 E-value=20 Score=29.99 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHH
Q 035507 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVRE 352 (684)
Q Consensus 310 ~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~ 352 (684)
..++..+..++. .|+.-..+++.|+++.|+.+|.++|..+..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 346677778887 788888899999999999999998877643
No 354
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=46.73 E-value=3.7e+02 Score=31.01 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=51.6
Q ss_pred CcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 035507 474 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG 534 (684)
Q Consensus 474 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 534 (684)
++..|..|+..|+.++...+.....+.+..+++.|++.|....+..+...|..+|..+.-.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 4568999999999999988888888999999999999997775777778888888777543
No 355
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.12 E-value=53 Score=38.21 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=69.5
Q ss_pred hhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc---CCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC
Q 035507 415 QVRPALPALAQLIHSNDEQVLTDACWALFGLSG---DRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG 491 (684)
Q Consensus 415 ~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~---~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 491 (684)
.+..++....++|.+++..++..++.++....- ...+.... ++ +-..|.++..+..+++-+...|+.+|.+++..
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 346666777788899999999999999875330 22222222 22 24678899999999999999999999999987
Q ss_pred ChhhHHHHHhcCChHHHHHHhcc
Q 035507 492 DDFQTQCIINHGAVPCLLALLIH 514 (684)
Q Consensus 492 ~~~~~~~~i~~g~l~~L~~lL~~ 514 (684)
..+..+.-+-..++|.+-.++.+
T Consensus 878 sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 878 SGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 76654433333577777766644
No 356
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=45.93 E-value=23 Score=29.65 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHH
Q 035507 565 EAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTV 608 (684)
Q Consensus 565 ~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~ 608 (684)
++...+..++. .|+....|++.|++..|+++|.|.+.++...
T Consensus 65 ~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 65 EEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 45556666665 6788999999999999999999999887543
No 357
>PLN03205 ATR interacting protein; Provisional
Probab=45.75 E-value=3.8e+02 Score=28.14 Aligned_cols=159 Identities=13% Similarity=0.162 Sum_probs=90.8
Q ss_pred hchHHHHHHHhcCCcHHHHHHHHHHHH----hhccCCChHHHHHHHHhchHHH---HHHh-cCCCCcccHhHHHHHHHHH
Q 035507 417 RPALPALAQLIHSNDEQVLTDACWALF----GLSGDRNNDKIQAVIEAGVCGR---LVEL-LGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 417 ~~~l~~L~~lL~~~d~~v~~~al~~L~----~L~~~~~~~~~~~~~~~g~l~~---L~~l-L~~~~~~v~~~al~~L~nl 488 (684)
...+.+|+.+..-++..+...+++.|. +++ ++....+.-.+.+.+.. +.++ ..+..+.++..|+.++.-+
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~--~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVI 399 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHIC--GDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNII 399 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHh--CCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHh
Confidence 444555555555555555555555443 444 34444444444444332 2222 2346778888999888777
Q ss_pred HcCChhh--HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH---------------------HH-
Q 035507 489 VMGDDFQ--TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV---------------------ID- 544 (684)
Q Consensus 489 ~~~~~~~--~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l---------------------~~- 544 (684)
...++.. ++.+....++..+.++|.......|+++|...+.-+... +.....+ ..
T Consensus 400 lmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC-pklL~iFcSg~~e~~~ad~eNd~~~n~st~k 478 (652)
T PLN03205 400 VMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC-PKLYDRFDSLHEEKNSSDTENDSEGNFFALE 478 (652)
T ss_pred hhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC-cHHHHHHhcCCccccccccccccccccccHH
Confidence 6555433 444555667888888887664667999987665433211 0000000 00
Q ss_pred --hCCHHHHHHHhcc-----CCHhHHHHHHHHHHHhhcCCC
Q 035507 545 --AGLIGPLVNLLQN-----AEFDIKEEAAWAISNASSRGT 578 (684)
Q Consensus 545 --~g~l~~Li~ll~~-----~~~~v~~~a~~aL~nl~~~~~ 578 (684)
..++..|-+.+.. .+.++++.|...|.-++..|.
T Consensus 479 ~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 479 AFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 1134555555543 277889999999999988664
No 358
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=45.12 E-value=1.6e+02 Score=30.64 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=68.4
Q ss_pred hhchHHHHHHHhcC------C-cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC----------CCcccH
Q 035507 416 VRPALPALAQLIHS------N-DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH----------PSPSVL 478 (684)
Q Consensus 416 ~~~~l~~L~~lL~~------~-d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~----------~~~~v~ 478 (684)
...++|.++.++.. . +-......+..+..|. .+..-..+..+.. ++|.++.++-. +...+|
T Consensus 208 l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl-~N~~l~le~Ylh~-Lip~vltclv~~~l~~~~~~~~h~~LR 285 (343)
T cd08050 208 LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL-DNPNLHLEPYLHQ-LIPSVLTCLVAKQLCSRPPDDNHWALR 285 (343)
T ss_pred chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh-cCCCCchHHhHHH-HHHHHHHHhhhHhhcCCCCCchHHHHH
Confidence 35677777777653 2 5677777888888888 6665555555544 78888877632 335789
Q ss_pred hHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCCh-hHHHHHHHHHHHH
Q 035507 479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKN-SIKKEVSWIISNI 531 (684)
Q Consensus 479 ~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~-~v~~~a~~~L~nl 531 (684)
..|+.+++.++......... +...+...+.+.+.++..+ ....-|...|+.+
T Consensus 286 d~AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 286 DYAARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999998543322111 2223444555555544223 2355555555554
No 359
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=42.95 E-value=5.3e+02 Score=29.00 Aligned_cols=108 Identities=16% Similarity=0.276 Sum_probs=57.3
Q ss_pred hHHHHHhcCCC--ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc--cCCc-hHHHHHHHHHHHHhccCCCC
Q 035507 336 VPIFVKLLASP--SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN--EHTE-LSMLRIATTTLSNLCRGKPR 410 (684)
Q Consensus 336 i~~Li~lL~~~--~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~--~~~~-~~v~~~a~~~L~nL~~~~~~ 410 (684)
+..+...+... +..-....+||+|.+++.-.+.-+.-.-.+++..|+.+.. ...+ ..+.. .-+..+...-|.
T Consensus 483 i~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvA---SnIMyvvGQYpR 559 (1053)
T COG5101 483 IGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVA---SNIMYVVGQYPR 559 (1053)
T ss_pred HHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhe---cceeeeeccchH
Confidence 44555555543 3444567899999998654432121111234555555542 1111 11111 111111111111
Q ss_pred ---CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 411 ---PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 411 ---~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
........++..|..+++...+.++.-||.++..++
T Consensus 560 FLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIv 598 (1053)
T COG5101 560 FLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIV 598 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHH
Confidence 112233566777788888888999999999999888
No 360
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=42.84 E-value=3e+02 Score=26.06 Aligned_cols=141 Identities=15% Similarity=0.174 Sum_probs=86.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-CChHHHHHH-HHHHHHhhCCCCCCchh
Q 035507 294 PRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-PSDDVREQA-VWALGNVAADSSGCRDL 371 (684)
Q Consensus 294 ~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a-~~~L~nLa~~~~~~r~~ 371 (684)
..+..+..++. .+.+..|+.++.......+. ..++.+-..+.. ++..+.... ..+++.+....
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 34455666766 78888888887654431110 134555566655 667777666 55556653221
Q ss_pred HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh
Q 035507 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN 451 (684)
Q Consensus 372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~ 451 (684)
....+++.....+.+.-.++.++-++...... ......+..+...+.+++..++..+.|+|..++ ..++
T Consensus 119 ----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~-~~~~ 187 (213)
T PF08713_consen 119 ----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIG-KKDP 187 (213)
T ss_dssp ----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHC-TT-H
T ss_pred ----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH-HhCH
Confidence 12344444444777887888776665544433 233556666667778889999999999999999 7777
Q ss_pred HHHHHHHHh
Q 035507 452 DKIQAVIEA 460 (684)
Q Consensus 452 ~~~~~~~~~ 460 (684)
+....++..
T Consensus 188 ~~v~~~l~~ 196 (213)
T PF08713_consen 188 DEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655554
No 361
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=42.15 E-value=77 Score=27.41 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc---cCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHH
Q 035507 561 DIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL---QCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFA 637 (684)
Q Consensus 561 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL---~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~ 637 (684)
..-...+.-|+..+... ..+.. +++.|..-| +..++.++..+|..|..++..|... +.
T Consensus 18 gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~------------~~ 78 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER------------FV 78 (125)
T ss_dssp S--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH------------HH
T ss_pred CcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH------------HH
Confidence 33344455566665522 33333 455666666 6678889999999999999987654 33
Q ss_pred HHHHH-hchHHHHHHhhc------CCCHHHHHHHHHHHHHhcCC
Q 035507 638 QLVEE-AEGLEKIENLQS------HDNNEIHEKSVKILETYWCG 674 (684)
Q Consensus 638 ~~i~~-~g~~~~L~~L~~------~~~~~i~~~a~~ii~~~f~~ 674 (684)
..+.+ ...+..+...+. .....|+++|..+++-.+++
T Consensus 79 ~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 79 DELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp HHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 44422 233333333322 11245999999999866543
No 362
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=42.06 E-value=20 Score=39.26 Aligned_cols=56 Identities=20% Similarity=0.112 Sum_probs=41.3
Q ss_pred hccccccCCccccccccCccccccCCccceeeccCcccccccccccCcccchhhhhccc
Q 035507 137 EKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLKTW 195 (684)
Q Consensus 137 l~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~~~~ 195 (684)
|+.|.|.+ -+||+|-... ..-||.||+|...+=|-+.+=...+.-. .|++..++..
T Consensus 394 LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 394 LRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred hhheeecC-ceeeecchhh-hccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 46666655 5788887753 4679999999999988887766665555 8888888743
No 363
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=41.16 E-value=3.6e+02 Score=31.72 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=51.9
Q ss_pred hHHHHHHHHhCCHHHHHHHhccC-CHhHHHHHHHHHHHhhcC-----CCHHHHHHHHHCCChHHHHhhccC
Q 035507 536 REQIQAVIDAGLIGPLVNLLQNA-EFDIKEEAAWAISNASSR-----GTHDQIKYLVTEGCIKPLCDLLQC 600 (684)
Q Consensus 536 ~~~~~~l~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~-----~~~~~~~~l~~~g~l~~L~~lL~~ 600 (684)
...++.+-+..+++.+++++... +++++..|...|+.+++. +.....++|.....++.|+..+-.
T Consensus 180 ~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~ 250 (838)
T KOG2073|consen 180 TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLE 250 (838)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHcc
Confidence 45566677788999999999875 789999999999999987 666677888888888888775443
No 364
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=40.95 E-value=4.2e+02 Score=27.21 Aligned_cols=176 Identities=13% Similarity=0.117 Sum_probs=100.3
Q ss_pred CcccHhHHHHHHHHHHcCChhhHHHHHhc-----------CChHHHHHHhc------cCCChhHHHHHHHHHHHHhcCCh
Q 035507 474 SPSVLTPALWTVGNIVMGDDFQTQCIINH-----------GAVPCLLALLI------HNHKNSIKKEVSWIISNIACGNR 536 (684)
Q Consensus 474 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~-----------g~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~~ 536 (684)
.-++|.+|+.++.....++++....+++. ....-|...|- .. ++.--..|+.++..+..+++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCH
Confidence 45788999999999999888777666642 11223444443 22 44445678889999988887
Q ss_pred HHHHHHHHh------------CCHHHHHHHhcc-----CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHC-CChHHHHhhc
Q 035507 537 EQIQAVIDA------------GLIGPLVNLLQN-----AEFDIKEEAAWAISNASSRGTHDQIKYLVTE-GCIKPLCDLL 598 (684)
Q Consensus 537 ~~~~~l~~~------------g~l~~Li~ll~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-g~l~~L~~lL 598 (684)
+.+..+..- ..++.+..+|.. .++.++-.-+..|+.... +++.-...+... ..+..|++..
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~-e~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLF-ECPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHT-T-HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHh-CCHHHHHHHHcCcchHHHHHHHh
Confidence 776655421 135556666544 255666655666666665 467777777665 4688888865
Q ss_pred c---CCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHH-Hhc---hHHHHHHhhcCC
Q 035507 599 Q---CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVE-EAE---GLEKIENLQSHD 656 (684)
Q Consensus 599 ~---~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~-~~g---~~~~L~~L~~~~ 656 (684)
. ..++-|+-.+.-.|.-+.....+... -.-..+...+. +.| .+++|.++.+++
T Consensus 209 ~~~~~~~~~VqGL~A~LLGicyef~~~~s~-----~~R~~l~~ll~~riG~d~y~~kl~~lr~~~ 268 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGICYEFSTKDSP-----IPRATLHPLLTKRIGRDNYFSKLEQLRKSP 268 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHHHHT-S-SCC-----C-HHHHHHHHHHHT-HHHHHHHHHCCCCST
T ss_pred hcCCCCcchHHHHHHHHHHHHHHhcCCCCC-----cCHHHHHHHHHHhcCHHHHHHHHHHHhcCh
Confidence 3 23455666666666666666543321 12334555553 344 444555555554
No 365
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=40.94 E-value=14 Score=22.17 Aligned_cols=14 Identities=7% Similarity=0.299 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhc
Q 035507 520 IKKEVSWIISNIAC 533 (684)
Q Consensus 520 v~~~a~~~L~nl~~ 533 (684)
||..|+++|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68899999999854
No 366
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=40.85 E-value=1.6e+02 Score=26.17 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=50.9
Q ss_pred ChHHHHhhcc-CCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHH-HHHhhc---CCCHHHHHHH
Q 035507 590 CIKPLCDLLQ-CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEK-IENLQS---HDNNEIHEKS 664 (684)
Q Consensus 590 ~l~~L~~lL~-~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-L~~L~~---~~~~~i~~~a 664 (684)
++..|..-+. +.++.++..++..|..+++.+... |...+-.-++++. |..+.. +.+.+|.++.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~ki 106 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKV 106 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHH
Confidence 3445555555 468899999999999999887553 5556666677776 666643 2356899999
Q ss_pred HHHHHHh
Q 035507 665 VKILETY 671 (684)
Q Consensus 665 ~~ii~~~ 671 (684)
..+++.+
T Consensus 107 l~li~~W 113 (141)
T cd03565 107 LALIQAW 113 (141)
T ss_pred HHHHHHH
Confidence 9999877
No 367
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=40.25 E-value=5.9e+02 Score=28.70 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 035507 260 SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIAS 321 (684)
Q Consensus 260 s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~ 321 (684)
+.++++..+.+..+...+.- -|.+.+.+..+++.+..-+.+. |+.|...+.||+.++.
T Consensus 204 ~~~~SLi~ATLesllrfl~w--iPl~yIfeTnIieLv~~~f~s~--pd~r~~tl~CLtEi~~ 261 (1053)
T COG5101 204 SRDESLIEATLESLLRFLEW--IPLDYIFETNIIELVLEHFNSM--PDTRVATLSCLTEIVD 261 (1053)
T ss_pred cCChHHHHHHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHh
Confidence 55777777777777665543 4678888899998888776654 4678888899998887
No 368
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=40.01 E-value=3.9e+02 Score=29.41 Aligned_cols=107 Identities=16% Similarity=0.187 Sum_probs=70.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHHHhcC
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-------YPQLQFQAAWALTNIASG 322 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-------~~~v~~~A~~~L~~l~~~ 322 (684)
-...+.+.+-++|+..+.+|+..|+. ++-+.. .+|.|+.++...- +-............+..
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T-----DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~- 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET-----DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD- 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc-----CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-
Confidence 45777888888899999999888865 222222 4688888886532 23455556666666665
Q ss_pred CchhHHHHHhcCChHHHHHhcCC----------CChHHHHHHHHHHHHhhCCCCC
Q 035507 323 TSENTKVVIEHDAVPIFVKLLAS----------PSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 323 ~~~~~~~i~~~g~i~~Li~lL~~----------~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
++...-...=+..+|.++.++-+ ....+|.-|+..+..++.+...
T Consensus 277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~ 331 (576)
T KOG2549|consen 277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFST 331 (576)
T ss_pred CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhh
Confidence 56555444445667888776543 2467899999999988865543
No 369
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.84 E-value=91 Score=33.82 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=55.8
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHh-hcC-CCHHHHHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENL-QSH-DNNEIHEKSVKI 667 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L-~~~-~~~~i~~~a~~i 667 (684)
++..|..-+.+.++.++..||..|..+++.+... |...+-+.++++.+..+ .++ .+..|++++..+
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~------------fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~L 106 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS------------FHLQVASKEFLNEMVKRPKNKPRDLKVREKILEL 106 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHhccccCCcchhHHHHHHHH
Confidence 4666777788888899999999999999877654 66677777777765555 566 788999999999
Q ss_pred HHHh
Q 035507 668 LETY 671 (684)
Q Consensus 668 i~~~ 671 (684)
|+.+
T Consensus 107 I~~W 110 (470)
T KOG1087|consen 107 IDTW 110 (470)
T ss_pred HHHH
Confidence 9987
No 370
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=39.83 E-value=35 Score=20.79 Aligned_cols=14 Identities=7% Similarity=0.456 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHh
Q 035507 519 SIKKEVSWIISNIA 532 (684)
Q Consensus 519 ~v~~~a~~~L~nl~ 532 (684)
.+|.+|+++|+++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 57999999999983
No 371
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=39.63 E-value=68 Score=33.29 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=57.4
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQS-HDNNEIHEKSVKIL 668 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~-~~~~~i~~~a~~ii 668 (684)
+++.+..-|++.|+.|+..++..+..+...+.+. |...+....+...+..|.. ...+.|.++...++
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~------------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR------------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH------------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 6788888999999999999999999998877654 5566666667777888866 66788988888888
Q ss_pred HHhcC
Q 035507 669 ETYWC 673 (684)
Q Consensus 669 ~~~f~ 673 (684)
.++-+
T Consensus 114 ~eWse 118 (462)
T KOG2199|consen 114 KEWSE 118 (462)
T ss_pred HHHHH
Confidence 77643
No 372
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=39.58 E-value=4.8e+02 Score=27.50 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHh
Q 035507 348 DDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI 427 (684)
Q Consensus 348 ~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL 427 (684)
..-++-|...+.+...+-|...+. ++.+-+.++ .+.|..+++.|+.-|-.+|.++ ....+.+.++++|
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQLL 105 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHHH
Confidence 344455666666666665553332 344555555 6667778888888888888773 2234445555555
Q ss_pred c------------CCcHHHHHHHHHHHH-hhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHH
Q 035507 428 H------------SNDEQVLTDACWALF-GLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV 489 (684)
Q Consensus 428 ~------------~~d~~v~~~al~~L~-~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~ 489 (684)
+ ..|..+++.++.-|. .+. .-..+....-++..++.-+...|.+-...--...+..|+++.
T Consensus 106 nk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~-~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk 179 (460)
T KOG2213|consen 106 NKASLTGLFGQIEVGDEQIREKVLKFIRTKLI-TLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLK 179 (460)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh-cccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 4 235555555555443 222 333333333344444444444454433333334444555554
No 373
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.32 E-value=9e+02 Score=30.29 Aligned_cols=252 Identities=14% Similarity=0.128 Sum_probs=123.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHH---H-HHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPR---F-VEFLMREDYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~---L-v~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
.+..+++.|...|+.++..|++.|..+....+.... .|++|. + .+++.+++ ..+|.+.-.++.++...
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~----~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~--- 113 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTEEL----KGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTK--- 113 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccchHH----hhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHH---
Confidence 567889999999999999999999998876542221 233432 2 34445555 89999999999988872
Q ss_pred hHHHHHh--cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCC-HHHHH-HHhc-cC------------
Q 035507 326 NTKVVIE--HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGA-LIPLL-AQLN-EH------------ 388 (684)
Q Consensus 326 ~~~~i~~--~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~-l~~Ll-~~L~-~~------------ 388 (684)
.++.+.. ...++...-.-.+.+..+.+.|...+-..... ...|......+. +..++ +.+. .+
T Consensus 114 lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~-ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~ 192 (1312)
T KOG0803|consen 114 LKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAE-EKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSS 192 (1312)
T ss_pred HHHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcCh-hhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcch
Confidence 2222211 11222222222233444555555555444331 111222221111 11111 1110 01
Q ss_pred -----CchHHHHHHHHHHHHhccCC-CCCChhh----h--hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHH
Q 035507 389 -----TELSMLRIATTTLSNLCRGK-PRPLFDQ----V--RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQA 456 (684)
Q Consensus 389 -----~~~~v~~~a~~~L~nL~~~~-~~~~~~~----~--~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~ 456 (684)
....+...++-++..+.... ....... . --.-..+-.++.+..+.+..+....+.+++ +.-... -.
T Consensus 193 Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~-~~i~~~-~~ 270 (1312)
T KOG0803|consen 193 EELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLI-DDILNR-VM 270 (1312)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHH-hhhHHh-cc
Confidence 01233344444444443222 1111111 1 112234566778888999999999999988 432222 11
Q ss_pred HHHhchHH-HHHHhcCCCCcccHhHHHHHHHHHHcC-ChhhHHH--HHhcCChHHHHHHhc
Q 035507 457 VIEAGVCG-RLVELLGHPSPSVLTPALWTVGNIVMG-DDFQTQC--IINHGAVPCLLALLI 513 (684)
Q Consensus 457 ~~~~g~l~-~L~~lL~~~~~~v~~~al~~L~nl~~~-~~~~~~~--~i~~g~l~~L~~lL~ 513 (684)
-.+...+. .+.....+.+ .+.......+.+.... .+.-... ....|++|.+..++.
T Consensus 271 ~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 271 ESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 11122333 3333344333 3333344444432222 2221111 145577788877776
No 374
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=38.23 E-value=1.8e+02 Score=24.44 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=52.9
Q ss_pred CChHHHHHHhcc---CCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCC
Q 035507 503 GAVPCLLALLIH---NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRG 577 (684)
Q Consensus 503 g~l~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~ 577 (684)
|++..+...+.+ ..+..-|+.+..++..+..-....+. .+.|.+...|+.. .++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 455666666655 33667888899999888763333333 2466677776654 5689999998888888766
Q ss_pred CHHHHHHHHH
Q 035507 578 THDQIKYLVT 587 (684)
Q Consensus 578 ~~~~~~~l~~ 587 (684)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6665554443
No 375
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.89 E-value=6.6e+02 Score=28.59 Aligned_cols=296 Identities=14% Similarity=0.114 Sum_probs=146.7
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 249 EILPMMVAGVW-SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 249 ~~l~~lv~~L~-s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
..++.+.+.|. +.|+..+..|-.+|+.+.. +++. +..---++..++.|--+..|+.+|..+.++... .
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-spec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~-l 73 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELSE-SPEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTP-L 73 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCC-C
Confidence 45677777776 7789999999999988543 3322 223333455555577888899999998874431 1
Q ss_pred HHHHhcCChHHHHHhcCCCChH----HHHHHHHHHHHhhCCCCC--CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHH
Q 035507 328 KVVIEHDAVPIFVKLLASPSDD----VREQAVWALGNVAADSSG--CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTL 401 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~----v~~~a~~~L~nLa~~~~~--~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L 401 (684)
......++-.+++..+....|. +....+..++.+..-.-- .++...-.+.+..+.+.+ +..+.+--..++..|
T Consensus 74 pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iL 152 (1082)
T KOG1410|consen 74 PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQIL 152 (1082)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHH
Confidence 1111123345566666664333 333444444555432210 111112223456666667 344444444455555
Q ss_pred HHhccCCCCCChhhhhchHHHHHHHhcCC-cHHHHHHHHHHHHhhccCCC-hHHHHHHHHhchHHHHH----HhcC----
Q 035507 402 SNLCRGKPRPLFDQVRPALPALAQLIHSN-DEQVLTDACWALFGLSGDRN-NDKIQAVIEAGVCGRLV----ELLG---- 471 (684)
Q Consensus 402 ~nL~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~L~~~~~-~~~~~~~~~~g~l~~L~----~lL~---- 471 (684)
+.|........-..-..--..+..-++++ =-++..-+|..|.+.. +.+ ++.. ..|.+..++ +++.
T Consensus 153 sqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~-~~nlnd~~----q~~L~~~vL~L~l~Cl~FDfi 227 (1082)
T KOG1410|consen 153 SQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNV-DLNLNDRA----QLGLLMQVLKLNLNCLNFDFI 227 (1082)
T ss_pred HHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhc-ccCcccHh----HhhHHHHHHHHHhhhcccccc
Confidence 55554421110000000000111111111 1344455555555544 221 1111 123222222 2221
Q ss_pred -CC-C------cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-----ChHH
Q 035507 472 -HP-S------PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-----NREQ 538 (684)
Q Consensus 472 -~~-~------~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~~ 538 (684)
+. + -.++.+.. =+..+.+...+..+.++..+- .+...+.|..+|..+|.- +...
T Consensus 228 Gss~DEssed~ctVQIPTs------------WRs~f~d~stlqlfFdly~sl-p~~~S~~alsclvqlASvRRsLFN~ae 294 (1082)
T KOG1410|consen 228 GSSTDESSEDLCTVQIPTS------------WRSSFLDSSTLQLFFDLYHSL-PPELSELALSCLVQLASVRRSLFNGAE 294 (1082)
T ss_pred ccccccccccccceecCcH------------HHHHhcCchHHHHHHHHhccC-CchhhHHHHHHHHHHHHHHHHHhCCHH
Confidence 10 0 11222211 233445666788888888887 788888899999888751 2222
Q ss_pred HHHHHHhCCHHHHHHHhccC----CHhHHHHHHHHHHHhhc
Q 035507 539 IQAVIDAGLIGPLVNLLQNA----EFDIKEEAAWAISNASS 575 (684)
Q Consensus 539 ~~~l~~~g~l~~Li~ll~~~----~~~v~~~a~~aL~nl~~ 575 (684)
++..+. .++....+++.++ |+.--.+-|..++.+-.
T Consensus 295 Ra~yl~-~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlkt 334 (1082)
T KOG1410|consen 295 RAKYLQ-HLVEGVKRILENPQGLSDPANYHEFCRLLARLKT 334 (1082)
T ss_pred HHHHHH-HHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHh
Confidence 332222 2556666677654 66666677777776643
No 376
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=37.50 E-value=3.9e+02 Score=25.92 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC---------C---------cccHhHHHHHHHHHHcCCh
Q 035507 432 EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP---------S---------PSVLTPALWTVGNIVMGDD 493 (684)
Q Consensus 432 ~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~---------~---------~~v~~~al~~L~nl~~~~~ 493 (684)
......+|..+..+. . .++-.....+.++++.+.+.|..- + ......=...||.++. ++
T Consensus 78 ~~y~~vGc~L~~~Ll-~-~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~ 154 (226)
T PF14666_consen 78 QKYVRVGCQLLETLL-S-SPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TP 154 (226)
T ss_pred hHHHHHHHHHHHHHH-c-CcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Ch
Confidence 555666777777777 3 455556666778888777776432 1 1112223446677755 44
Q ss_pred hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507 494 FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA 573 (684)
Q Consensus 494 ~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl 573 (684)
...+.+-+.+++..+..+........+. .-+++++--+.+..... .|-..|..++..+|..|...|..+
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~~~l~---klil~~LDY~~~~~~R~--------iLsKaLt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSRDDLL---KLILSSLDYSVDGHPRI--------ILSKALTSGSESIRLYATKHLRVL 223 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCchHHHH---HHHHhhCCCCCccHHHH--------HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5677777889999999999776232222 22555553322222222 345678888889999998888776
Q ss_pred hc
Q 035507 574 SS 575 (684)
Q Consensus 574 ~~ 575 (684)
+.
T Consensus 224 lr 225 (226)
T PF14666_consen 224 LR 225 (226)
T ss_pred hc
Confidence 53
No 377
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=36.79 E-value=1.7e+02 Score=24.64 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=52.5
Q ss_pred CChHHHHHHhccCC---ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCC
Q 035507 503 GAVPCLLALLIHNH---KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRG 577 (684)
Q Consensus 503 g~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~ 577 (684)
|++..+...+.+.+ +..-|+.+..++..+..-....+. .+.|.+...|+.. .++++..|..+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 56666777776652 334588888888887652222222 2567777777664 7789999999988888766
Q ss_pred CHHHHHHHHH
Q 035507 578 THDQIKYLVT 587 (684)
Q Consensus 578 ~~~~~~~l~~ 587 (684)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6665555443
No 378
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.72 E-value=7.2e+02 Score=28.74 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHH
Q 035507 260 SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIF 339 (684)
Q Consensus 260 s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~L 339 (684)
..=+.++..|+..+..++...++.- ..++..+|.-|.+++ ..+-..|...|.+|...+|..+..++ ..+
T Consensus 315 D~L~~vk~raL~ti~~lL~~kPEqE-----~~LL~~lVNKlGDpq-nKiaskAsylL~~L~~~HPnMK~Vvi-----~EI 383 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNKPEQE-----NNLLVLLVNKLGDPQ-NKIASKASYLLEGLLAKHPNMKIVVI-----DEI 383 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCCcHHH-----HHHHHHHHHhcCCcc-hhhhhhHHHHHHHHHhhCCcceeehH-----HHH
Confidence 3446888899999999998765332 235667888888888 58888999999999987887766554 334
Q ss_pred HHhcCCCC--hHHHHHHHHHHHHhhC
Q 035507 340 VKLLASPS--DDVREQAVWALGNVAA 363 (684)
Q Consensus 340 i~lL~~~~--~~v~~~a~~~L~nLa~ 363 (684)
-+++-.++ ......|+..|..+.-
T Consensus 384 er~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 384 ERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred HHHHcccCccccceeehhhhhhhhHh
Confidence 44444433 3445566777776653
No 379
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=35.92 E-value=6e+02 Score=27.54 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=53.5
Q ss_pred hHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHH
Q 035507 462 VCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ-TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQI 539 (684)
Q Consensus 462 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~ 539 (684)
++..+-+++.+.. .-..+...|..+...-+.. .+..+ ..++..+..-|++....+..+.-+..++.++. .+++..
T Consensus 203 iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~l 279 (435)
T PF03378_consen 203 ILGVFQKLIASKA--NDHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFL 279 (435)
T ss_dssp HHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3444445565544 2355777777777655531 11111 12344444445544355555555555665543 344544
Q ss_pred HHHHH---hCCHHHHHHH-----hcc-CCHhHHHHHHHHHHHhhc
Q 035507 540 QAVID---AGLIGPLVNL-----LQN-AEFDIKEEAAWAISNASS 575 (684)
Q Consensus 540 ~~l~~---~g~l~~Li~l-----l~~-~~~~v~~~a~~aL~nl~~ 575 (684)
-..++ .|+...++.- +.. ....-|+.++-+++++..
T Consensus 280 i~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~ 324 (435)
T PF03378_consen 280 IQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLC 324 (435)
T ss_dssp HHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHh
Confidence 44443 4554444432 111 234457777777888765
No 380
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=35.81 E-value=73 Score=30.39 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=55.6
Q ss_pred hchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHH
Q 035507 460 AGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI 539 (684)
Q Consensus 460 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 539 (684)
....+.+...+.++++-.+..++-++.......+ .. .++..+...+.++ +..+|+...|+|..++..+++..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~--~~-----~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v 190 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKED--FD-----ELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEV 190 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCH--HH-----HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcC--HH-----HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHH
Confidence 3567788888899998888888777655554421 22 1344555566777 88999999999999999888887
Q ss_pred HHHHHh
Q 035507 540 QAVIDA 545 (684)
Q Consensus 540 ~~l~~~ 545 (684)
..++..
T Consensus 191 ~~~l~~ 196 (213)
T PF08713_consen 191 LEFLQK 196 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777655
No 381
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=35.63 E-value=1.4e+02 Score=27.27 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=56.5
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH-hcC-ChHHHHH-hcCCCC--hHHHHHHHHH
Q 035507 283 PIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI-EHD-AVPIFVK-LLASPS--DDVREQAVWA 357 (684)
Q Consensus 283 ~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~-~~g-~i~~Li~-lL~~~~--~~v~~~a~~~ 357 (684)
....++...+.+.+.+.+.+++ +.+-..++.++..+.. ..+..+. +.+ .++.++. ++.+++ ..-|+.++.+
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~---~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~ 140 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLS---RFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEI 140 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence 4455677788899999988877 8899999999999986 3333332 222 2444554 566543 4678889999
Q ss_pred HHHhhCCCCC
Q 035507 358 LGNVAADSSG 367 (684)
Q Consensus 358 L~nLa~~~~~ 367 (684)
+..++.++.-
T Consensus 141 l~~l~~~p~~ 150 (168)
T PF12783_consen 141 LRELCKDPQF 150 (168)
T ss_pred HHHHHhChhH
Confidence 9999977643
No 382
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=35.50 E-value=1.7e+02 Score=24.75 Aligned_cols=70 Identities=7% Similarity=0.024 Sum_probs=51.7
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh-----c-cCCChHHHHHHHHHHHHH
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDL-----L-QCADPKIVTVCLEGLENI 616 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~l-----L-~~~~~~v~~~al~~L~~i 616 (684)
++..|..-+.+.++.++..|+..|-.++..+++.+...+.....+..++.. . ...+..|+..++..+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 455666667788999999999999999999988888887777666665442 1 123667888887776653
No 383
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.49 E-value=1.4e+02 Score=32.61 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=43.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-----CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-----MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIAS 321 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-----~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~ 321 (684)
.++.+++.+..+ . -+..|.++++.+. ...+-+.+.++++.|+.+|+...+++++..|+..|..|..
T Consensus 22 ~v~~llkHI~~~--~----ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 22 FVDNLLKHIDTP--A----IMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred HHHHHHHhcCCc--H----HHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 455555555432 1 1234445555443 2233445789999999999866668899999999888865
No 384
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=34.27 E-value=32 Score=25.15 Aligned_cols=53 Identities=26% Similarity=0.293 Sum_probs=26.4
Q ss_pred ccccccCCccccccccCccccccCCccceeeccCccccccccc-ccCcccchhhhhc
Q 035507 138 KKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRG-ELSAPMLHKVQLK 193 (684)
Q Consensus 138 ~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~Cp~l~~~~~~-~~~~~~l~~~~~~ 193 (684)
++|.|.+- +++.+..+. .-.+|+|++|.+.+| +++.+..+ ...-|+|+.+.+.
T Consensus 4 ~~L~l~~n-~l~~i~~~~-f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 4 ESLDLSNN-KLTEIPPDS-FSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLS 57 (61)
T ss_dssp SEEEETSS-TESEECTTT-TTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEET
T ss_pred cEEECCCC-CCCccCHHH-HcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCc
Confidence 44555543 555555442 224666666666633 34433333 3445555555443
No 385
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=33.83 E-value=2e+02 Score=30.04 Aligned_cols=72 Identities=10% Similarity=0.076 Sum_probs=59.5
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCChHHHHHHHHHHHHHHh
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ-CADPKIVTVCLEGLENILK 618 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~-~~~~~v~~~al~~L~~il~ 618 (684)
++..+.+-|...++.|.-.|+..+..++..+....+..+....+...|..++. ...+.|....-..+....+
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 56677788889999999999999999998887888888888888888888888 6677887777777666665
No 386
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=33.60 E-value=21 Score=33.07 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred ccccceeeecCCCchhhHHHHHHHHhhhCCCCCcEEE-ecCcccCCCcccccccccccc-ccccceeecccccccchhhh
Q 035507 58 LRGIEHLGLEGLQEQDVQNFVNELVKLQGSSQLKHLY-ISGSRLALNPEESERPEKLSY-DIPSNEIILEDDISIAKSLF 135 (684)
Q Consensus 58 l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~l~~l~-~~~~~~~l~~~~~~~c~~le~-ii~~~~~~~~~~~~~~~~~~ 135 (684)
+.+|+.|++.+-. +..+....+++.|+.|. ..+....+.......|.++++ .++.-.+..-+
T Consensus 41 l~~L~~L~Ls~N~-------I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~--------- 104 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ-------ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLN--------- 104 (175)
T ss_dssp -TT--EEE-TTS---------S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCC---------
T ss_pred hcCCCEEECCCCC-------CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChH---------
Q ss_pred hhccccccCCccccccccCccccc-cCCccceeeccCcccccc
Q 035507 136 IEKKLTLSYLKSLTSFCSGSCAIK-FPSLEVLVVDDCHNMMIF 177 (684)
Q Consensus 136 ~l~~l~l~~Lp~L~~~~~~~~~~~-fp~L~~~~v~~Cp~l~~~ 177 (684)
..-.|..||+|+...-..+++. -+.-+...+..||+|+.+
T Consensus 105 --~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 105 --ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp --CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred --HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
No 387
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=32.43 E-value=3.6e+02 Score=23.93 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=54.9
Q ss_pred HHHHHHHhc-cCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHH-HHhhccC---CChHHHHHHHHHHHHHHhc
Q 035507 548 IGPLVNLLQ-NAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKP-LCDLLQC---ADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 548 l~~Li~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~-L~~lL~~---~~~~v~~~al~~L~~il~~ 619 (684)
+..|.+=+. +.++.++..|+..+-.++..+.......+...+.++. |..++.. ....|...++..+......
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 344444455 4588899999999999999888888888888889987 8888863 2357888888888877654
No 388
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=31.77 E-value=2e+02 Score=27.43 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=42.9
Q ss_pred HHHhcCChHHHHHHhccCCC-----------------hhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCH
Q 035507 498 CIINHGAVPCLLALLIHNHK-----------------NSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEF 560 (684)
Q Consensus 498 ~~i~~g~l~~L~~lL~~~~~-----------------~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~ 560 (684)
.+.+.|++..++.+|..+.+ ..+-..++..|..++.+++++-..+.+. ++.++..+.....
T Consensus 38 llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~ 115 (207)
T PF01365_consen 38 LLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQI 115 (207)
T ss_dssp HHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhc
Confidence 34456777777777743211 2566788899999999887777766653 4433443333222
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 561 DIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 561 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
..--.+..++..+.. .+++-...+.+. .++.+++++...... ...++.|..++..+.
T Consensus 116 ~~~~~~~d~l~~i~~-dN~~L~~~i~e~-~I~~~i~ll~~~gr~--~~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 116 GYGLGALDVLTEIFR-DNPELCESISEE-HIEKFIELLRKHGRQ--PRYLDFLSSLCVCNG 172 (207)
T ss_dssp -TTHHHHHHHHHHHT-T--------------------------------------------
T ss_pred cCCchHHHHHHHHHH-CcHHHHHHhhHH-HHHHHHHHHHHcCCC--hHHHHHHhhhcccCC
Confidence 222345666777776 345555554444 488888888763322 346677777777654
No 389
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=31.27 E-value=1.3e+02 Score=26.97 Aligned_cols=46 Identities=28% Similarity=0.329 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 562 IKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 562 v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
-+..|...|+.|.-+- -+.+|+++|.++|+++...+.++|.+.+-+
T Consensus 79 s~~~Av~LLGtM~GGY------------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGY------------NVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp -HHHHHHHHTTS-SST------------THHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred CHHHHHHHHhhccCCC------------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 3456666676665433 277888899888888888888888876654
No 390
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=30.47 E-value=6.9e+02 Score=26.59 Aligned_cols=154 Identities=16% Similarity=0.098 Sum_probs=88.1
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc----------CCcHHHHHHHHHHHHhhccCC
Q 035507 380 PLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH----------SNDEQVLTDACWALFGLSGDR 449 (684)
Q Consensus 380 ~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~----------~~d~~v~~~al~~L~~L~~~~ 449 (684)
.+...|.+......+..++.++.-|++....-........+..|..+-. ..|-.+...++.+|+|+. ..
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv-f~ 127 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV-FH 127 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH-hc
Confidence 3344443333334444555666666666533333333344444444322 235688999999999999 77
Q ss_pred ChHHHHHHHHhchHHHHHHhcCC----C-CcccHhHHHHHHHHHHcCC-hhhHHHHHhcCChHHHHHHhccCC-------
Q 035507 450 NNDKIQAVIEAGVCGRLVELLGH----P-SPSVLTPALWTVGNIVMGD-DFQTQCIINHGAVPCLLALLIHNH------- 516 (684)
Q Consensus 450 ~~~~~~~~~~~g~l~~L~~lL~~----~-~~~v~~~al~~L~nl~~~~-~~~~~~~i~~g~l~~L~~lL~~~~------- 516 (684)
++...+...+......+.+.+.. . ...+...-++.|--+..-. +...+.+.+.++++.+-+++.++-
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 77777777777666665555432 1 1233334444444444333 334455667889999999985421
Q ss_pred -------ChhHHHHHHHHHHHHhcC
Q 035507 517 -------KNSIKKEVSWIISNIACG 534 (684)
Q Consensus 517 -------~~~v~~~a~~~L~nl~~~ 534 (684)
+....-+|..++.|++.+
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhheeec
Confidence 123455777888888763
No 391
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=30.42 E-value=8.6e+02 Score=27.70 Aligned_cols=246 Identities=16% Similarity=0.161 Sum_probs=114.3
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh-H------HHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHh
Q 035507 290 SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSEN-T------KVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNV 361 (684)
Q Consensus 290 ~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~-~------~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nL 361 (684)
.+-++.+|+-+++++ ++++..|+..|......+... + +.+. .-...|..+-.+ .++..+..++.+|+-|
T Consensus 47 k~dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLr--phy~~Lk~i~~~~~~~n~Kk~laDIlSvL 123 (878)
T KOG2005|consen 47 KGDLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLR--PHYGVLKEIYESMADSNLKKWLADILSVL 123 (878)
T ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhc--cchhHHHHHHHhccCchhHhHHHHHHHHH
Confidence 345788899999998 999999999998877632211 1 1111 112233333333 4567888999999999
Q ss_pred hCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC--CCCCChhhhhchHHHHHHH-hcCCcHHHHHHH
Q 035507 362 AADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG--KPRPLFDQVRPALPALAQL-IHSNDEQVLTDA 438 (684)
Q Consensus 362 a~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~--~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a 438 (684)
|-...+-... +.......... + ..-..+-.++.+..+..--.. ...+.+.....+...++.+ +.|+-+ ..|
T Consensus 124 amt~se~~~~-l~YRl~G~~~d-~-~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE---~eA 197 (878)
T KOG2005|consen 124 AMTMSERGEH-LAYRLLGSIID-L-GSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAE---FEA 197 (878)
T ss_pred heeecccchh-eeeeeccccCC-h-hhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccch---hHH
Confidence 8554432222 11111000000 0 000122333333333322211 1222222222222223322 223221 122
Q ss_pred HHHHHhhccCCChHHHHHHHHhchHHH-------HHHhcCCCC-cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHH
Q 035507 439 CWALFGLSGDRNNDKIQAVIEAGVCGR-------LVELLGHPS-PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA 510 (684)
Q Consensus 439 l~~L~~L~~~~~~~~~~~~~~~g~l~~-------L~~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~ 510 (684)
+..|..+- . -+..-..++..-..+ .+.++-.++ ..+...|..+-..+..... ..+..+.-+-.+.+.+
T Consensus 198 iDlL~Eve--~-id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~-al~~ai~l~~~~~v~~ 273 (878)
T KOG2005|consen 198 IDLLMEVE--G-IDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPR-ALVGAIRLDDMKEVKE 273 (878)
T ss_pred HHHHHHhh--h-HhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHH-HHHHHHhcCcHHHHHH
Confidence 33222222 0 011111111111122 222222222 2244555555555544333 3344445566788888
Q ss_pred HhccCCChhHHHHHHHHHHHHhc----CChHHHHHHHHhCCH
Q 035507 511 LLIHNHKNSIKKEVSWIISNIAC----GNREQIQAVIDAGLI 548 (684)
Q Consensus 511 lL~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~g~l 548 (684)
...+..|+..+++.+..|+.--- +..+..+.++.++-+
T Consensus 274 vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~~L 315 (878)
T KOG2005|consen 274 VFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILSNGKL 315 (878)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHccccH
Confidence 88777688899999998875422 123556666655443
No 392
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=30.35 E-value=4.8e+02 Score=28.34 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH
Q 035507 263 NNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK 341 (684)
Q Consensus 263 ~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~ 341 (684)
...+..|+.+|..+++.-+ +....+.+ +.|+.+|++.. ..-|..|+-++...+................+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 3567889999999888754 33333222 26889998887 667777888888888743322111101133456666
Q ss_pred hcCC
Q 035507 342 LLAS 345 (684)
Q Consensus 342 lL~~ 345 (684)
.|..
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 6663
No 393
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=30.14 E-value=1.4e+02 Score=30.91 Aligned_cols=65 Identities=25% Similarity=0.391 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcC--ChHHHHHhcCCC---ChHHHHHHHHHHHHhhCCCCCCchhH
Q 035507 307 QLQFQAAWALTNIASGTSENTKVVIEHD--AVPIFVKLLASP---SDDVREQAVWALGNVAADSSGCRDLV 372 (684)
Q Consensus 307 ~v~~~A~~~L~~l~~~~~~~~~~i~~~g--~i~~Li~lL~~~---~~~v~~~a~~~L~nLa~~~~~~r~~i 372 (684)
.+|..|+.++..+.. .+.....++..+ ++..|+++++.+ ...++..|+.+|..++.+...+.+.+
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 456666666666665 555666666666 899999998774 46799999999999998776554433
No 394
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=29.64 E-value=2.4e+02 Score=28.71 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=56.4
Q ss_pred hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC------C-------HHHHHHHHHCCChHHHHhhccC--------C--
Q 035507 545 AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG------T-------HDQIKYLVTEGCIKPLCDLLQC--------A-- 601 (684)
Q Consensus 545 ~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~------~-------~~~~~~l~~~g~l~~L~~lL~~--------~-- 601 (684)
...+..+++-|...+...+..|+.+|.-++.|. . ..+...+.+.|++++|.++|.. .
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~~~~~~~~~~~ 138 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMFIENSWSCDDQ 138 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccc
Confidence 346778888888889999999999999999864 1 2244567789999999999851 0
Q ss_pred ----------ChHHHHHHHHHHHHHHhccccc
Q 035507 602 ----------DPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 602 ----------~~~v~~~al~~L~~il~~~~~~ 623 (684)
+..-...++.++.-+.......
T Consensus 139 ~~~~~~~~~~~~~el~~~LTilY~~vev~r~~ 170 (293)
T PF07923_consen 139 DSNLPAVSLADSTELRVLLTILYFMVEVARRD 170 (293)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 1134566677777766665443
No 395
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=28.73 E-value=2.8e+02 Score=28.76 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHhc--hHHHHHHhcCCCC---cccHhHHHHHHHHHHcCChhhHHHH------Hhc
Q 035507 434 VLTDACWALFGLSGDRNNDKIQAVIEAG--VCGRLVELLGHPS---PSVLTPALWTVGNIVMGDDFQTQCI------INH 502 (684)
Q Consensus 434 v~~~al~~L~~L~~~~~~~~~~~~~~~g--~l~~L~~lL~~~~---~~v~~~al~~L~nl~~~~~~~~~~~------i~~ 502 (684)
++-.|+.++.++. .++.....+...+ ++.-|++++..++ ..++..|+++|..++.......+.+ +.+
T Consensus 238 iRllAi~~l~~~~--~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 238 IRLLAIANLVYIH--PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHhhC--CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Confidence 3444555555555 4555666677776 8999999997653 4688899999999998665333321 135
Q ss_pred CChHHHHH
Q 035507 503 GAVPCLLA 510 (684)
Q Consensus 503 g~l~~L~~ 510 (684)
|+++.++.
T Consensus 316 GiL~~llR 323 (329)
T PF06012_consen 316 GILPQLLR 323 (329)
T ss_pred ccHHHHHH
Confidence 66666654
No 396
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=28.46 E-value=31 Score=19.42 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=13.6
Q ss_pred CccceeeccCccccccccc
Q 035507 162 SLEVLVVDDCHNMMIFSRG 180 (684)
Q Consensus 162 ~L~~~~v~~Cp~l~~~~~~ 180 (684)
+|++|.+.+| +++.++.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 5788899999 77766655
No 397
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.70 E-value=62 Score=33.17 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCchhHHHHHhcCChHHHHHh--cCCCChHHHHHHHHHHHHhhCCCCCCchhHh
Q 035507 312 AAWALTNIASGTSENTKVVIEHDAVPIFVKL--LASPSDDVREQAVWALGNVAADSSGCRDLVL 373 (684)
Q Consensus 312 A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~l--L~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~ 373 (684)
..+.+++++...++..+.+.+-|+++.+++- +.+.+|-+++..+.++.++..++.+.++.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 4568899999999999999999999988874 4557899999999999999988877655554
No 398
>PRK15386 type III secretion protein GogB; Provisional
Probab=27.20 E-value=94 Score=33.21 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHhhccccceeeecCCCchhhHHHHHHHHhhhCCCCCcEEEecCcccCCCccccccccccccccccceeecccccccchh
Q 035507 54 LIVQLRGIEHLGLEGLQEQDVQNFVNELVKLQGSSQLKHLYISGSRLALNPEESERPEKLSYDIPSNEIILEDDISIAKS 133 (684)
Q Consensus 54 ~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~l~~l~~~~~~~~l~~~~~~~c~~le~ii~~~~~~~~~~~~~~~~ 133 (684)
.+..|++++.|.+.+.. |+.|. .+-+.|+.|.+.+|..|+. .+..
T Consensus 47 r~~~~~~l~~L~Is~c~-------------------L~sLP--~LP~sLtsL~Lsnc~nLts--------------LP~~ 91 (426)
T PRK15386 47 QIEEARASGRLYIKDCD-------------------IESLP--VLPNELTEITIENCNNLTT--------------LPGS 91 (426)
T ss_pred HHHHhcCCCEEEeCCCC-------------------CcccC--CCCCCCcEEEccCCCCccc--------------CCch
Q ss_pred hhh-hccccccCCccccccccCccccccCCccceeecc--Cccccccccc
Q 035507 134 LFI-EKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDD--CHNMMIFSRG 180 (684)
Q Consensus 134 ~~~-l~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~--Cp~l~~~~~~ 180 (684)
+.. |++|.+.+.++|.++ -++|+.|.+.. |+.++.++.+
T Consensus 92 LP~nLe~L~Ls~Cs~L~sL--------P~sLe~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 92 IPEGLEKLTVCHCPEISGL--------PESVRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred hhhhhhheEccCccccccc--------ccccceEEeCCCCCcccccCcch
No 399
>PRK09169 hypothetical protein; Validated
Probab=27.17 E-value=1.6e+03 Score=29.87 Aligned_cols=16 Identities=25% Similarity=0.192 Sum_probs=9.1
Q ss_pred cHHHHHHHHHHHHhhc
Q 035507 431 DEQVLTDACWALFGLS 446 (684)
Q Consensus 431 d~~v~~~al~~L~~L~ 446 (684)
++.-+.+++++|+...
T Consensus 329 ~aQ~vAN~LNALSKWp 344 (2316)
T PRK09169 329 NAQAVANALNALSKWP 344 (2316)
T ss_pred CHHHHHHHHHHHhcCC
Confidence 4555566666666544
No 400
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=26.90 E-value=7.2e+02 Score=25.68 Aligned_cols=194 Identities=9% Similarity=0.004 Sum_probs=95.6
Q ss_pred CCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccC-CChHHH
Q 035507 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGD-RNNDKI 454 (684)
Q Consensus 376 g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~-~~~~~~ 454 (684)
.++..++..+.+..++..+..++.++..-+..- .......++..+.+-+.+..+.++..-+..++... . ..+...
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~-~~~~~~~~ 97 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEAL-WESPNSDS 97 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-hhccCchH
Confidence 346677777777777777777776665443322 11222566777888888888878888777777776 2 111111
Q ss_pred HHHHHhchHHHHHHhcC----CCCcccH---hHHHHHHHHHHcCChhhHHH-------HH-hc--C--ChHHHHHHhccC
Q 035507 455 QAVIEAGVCGRLVELLG----HPSPSVL---TPALWTVGNIVMGDDFQTQC-------II-NH--G--AVPCLLALLIHN 515 (684)
Q Consensus 455 ~~~~~~g~l~~L~~lL~----~~~~~v~---~~al~~L~nl~~~~~~~~~~-------~i-~~--g--~l~~L~~lL~~~ 515 (684)
..+. ..++|.|.+.++ ++-+... ..++.++..+........+. +. +. . .-+.+..-+ .
T Consensus 98 ~~~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~ 174 (339)
T PF12074_consen 98 LKFA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A 174 (339)
T ss_pred HHHH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence 1122 236677776663 3322222 11222221111111111110 00 00 0 011222221 1
Q ss_pred CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCC
Q 035507 516 HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRG 577 (684)
Q Consensus 516 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~ 577 (684)
+++-....+.++..+..+.......-.....-..++.++.+. ..++|+.|..++..+....
T Consensus 175 -~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 175 -SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASN 237 (339)
T ss_pred -CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 222233344444444433222111111122456677777777 8999999999999988743
No 401
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=26.86 E-value=4.5e+02 Score=23.34 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=46.3
Q ss_pred CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCCh
Q 035507 334 DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLF 413 (684)
Q Consensus 334 g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~ 413 (684)
..-..+..+|.++++++|..|+.||...-. + .+... -..|-.++ |....+..+..+. +.........
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~--~----~l~pY--~d~L~~Ll----dd~~frdeL~~f~-~~~~~~~I~~ 83 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKD--P----YLTPY--KDNLENLL----DDKTFRDELTTFN-LSDESSVIEE 83 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H----HHHhH--HHHHHHHc----CcchHHHHHHhhc-ccCCcCCCCH
Confidence 445667789999999999999999988521 1 11110 12233333 2223333322222 2222233445
Q ss_pred hhhhchHHHHHHHhc
Q 035507 414 DQVRPALPALAQLIH 428 (684)
Q Consensus 414 ~~~~~~l~~L~~lL~ 428 (684)
..-..++|.++++|.
T Consensus 84 ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 84 EHRPELMPVVLRILY 98 (141)
T ss_pred HHHhHHHHHHHHHHH
Confidence 556888999988874
No 402
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=26.85 E-value=2.2e+02 Score=24.28 Aligned_cols=53 Identities=11% Similarity=0.232 Sum_probs=0.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC---------CCcHHHHHHcCCHHHHHHhhcCC
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIE---------SMPIEEVIESGVVPRFVEFLMRE 303 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~---------~~~~~~ii~~g~i~~Lv~lL~~~ 303 (684)
+++.+++.|.+.++++...|+..|....... .|....+.+.| -+.+..+++.+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~p~l~~L~~~g-~~Ll~~~lS~~ 70 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLRPSLDHLGDIG-SPLLLRFLSTP 70 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcCcHHHHHHHcC-HHHHHHHHcch
No 403
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=26.84 E-value=7e+02 Score=25.48 Aligned_cols=124 Identities=13% Similarity=0.188 Sum_probs=82.6
Q ss_pred HHHHHcCCHHHHHHhhcC-------CC---------------CHHHHHHHHHHHHHHhcCCchhHHH-------------
Q 035507 285 EEVIESGVVPRFVEFLMR-------ED---------------YPQLQFQAAWALTNIASGTSENTKV------------- 329 (684)
Q Consensus 285 ~~ii~~g~i~~Lv~lL~~-------~~---------------~~~v~~~A~~~L~~l~~~~~~~~~~------------- 329 (684)
..+++.|++|.|-++.+. ++ +..++.+-++.+.+++.+++.....
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 346677888888777643 00 0147788888999988844222111
Q ss_pred --------HHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCC--CchhHhhcCCHHHHHHHhccCC--chHHHH
Q 035507 330 --------VIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSG--CRDLVLSEGALIPLLAQLNEHT--ELSMLR 395 (684)
Q Consensus 330 --------i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~--~r~~i~~~g~l~~Ll~~L~~~~--~~~v~~ 395 (684)
--+.|.+..++..+.. .+...+-.-+.++-.+.+..+. -+..+.+.|.++.++..+.++. +..+..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 1124667777776654 3455666677777777766554 3456778999999999886444 456888
Q ss_pred HHHHHHHHhccCC
Q 035507 396 IATTTLSNLCRGK 408 (684)
Q Consensus 396 ~a~~~L~nL~~~~ 408 (684)
.....|+.|.+..
T Consensus 163 ~~FDLLGELiK~n 175 (303)
T PF12463_consen 163 SNFDLLGELIKFN 175 (303)
T ss_pred HHHHHHHHHHCCC
Confidence 8889999988875
No 404
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.33 E-value=2e+02 Score=22.97 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=41.1
Q ss_pred cCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc----cCCHhHHHHHHHHH
Q 035507 502 HGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ----NAEFDIKEEAAWAI 570 (684)
Q Consensus 502 ~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~----~~~~~v~~~a~~aL 570 (684)
..++.++..++.+..+.++|.....++.++.....+.+ ..| .+.++.++. +++.++...|-.++
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i----~SG-W~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI----KSG-WKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH----Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34677788887555588999999999999987544433 343 555555543 34556666555444
No 405
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.32 E-value=1.4e+03 Score=28.76 Aligned_cols=212 Identities=12% Similarity=0.080 Sum_probs=113.4
Q ss_pred CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
+.+.......-+..+++-+...|+.++..|+..++.+. +..+.....-+-.-......++..+.+..+|...-.++..+
T Consensus 32 ~~~~~~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli-~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l 110 (1312)
T KOG0803|consen 32 PDPFVLELDSELDIIVKKLLKRDETTKIKALQELSELI-DTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKL 110 (1312)
T ss_pred CChHHhccCHHHHHHHHHHhccChHHHHHHHHhHHHhc-ccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 33333344555667777788899999999999999999 43322211111111223455667788999999999999998
Q ss_pred HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccC---------
Q 035507 489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNA--------- 558 (684)
Q Consensus 489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~--------- 558 (684)
.+.-.......+. ..+|...---.+. +..+...|-..+.+..+ ....+.....+..+.+.+.+.+...
T Consensus 111 ~t~lkk~lsp~LK-~li~~wl~~~~d~-~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~ 188 (1312)
T KOG0803|consen 111 LTKLKKKLSPFLK-SLIPPWLGGQFDL-DYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLR 188 (1312)
T ss_pred HHHHHHHhhHHHH-hhhhhhhheeccc-chHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhh
Confidence 8755433222222 1222222222233 44555566555555543 1122222233344444444442110
Q ss_pred ----------CHhHHHHHHHHHHHhh-cCCCHHHHHHHHH-CC---ChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507 559 ----------EFDIKEEAAWAISNAS-SRGTHDQIKYLVT-EG---CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 559 ----------~~~v~~~a~~aL~nl~-~~~~~~~~~~l~~-~g---~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~ 623 (684)
-..+...+.-++..+. ..+..+....+.+ .+ --+.+-.++++..|.+..+..+.+..+++.-...
T Consensus 189 ~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 189 TLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred hcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 1122333444444443 1222222221111 11 1455667778888889999888888888765544
No 406
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=25.78 E-value=3.5e+02 Score=24.69 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=52.2
Q ss_pred cCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 375 EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 375 ~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
.|.+...+..+....|..+....+.++.+.... ..-.......++|.+..+|.+..+.-...++..+..+.
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~ 97 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSIL 97 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 344556666665667777777777776654443 33455566889999999999999999999999998887
No 407
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=25.43 E-value=2.8e+02 Score=21.20 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=45.0
Q ss_pred HHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHH
Q 035507 396 IATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCG 464 (684)
Q Consensus 396 ~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~ 464 (684)
..+|+.+.|--. |.........+...+..-+..-++....+++|.++.+- ..+.+..+.+.+..++.
T Consensus 3 ~il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~-~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 3 SILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQ-RFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh-hCCHHHHHHHcCHHHHh
Confidence 345555655533 43333344556666666666777999999999999988 77777777777665554
No 408
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.39 E-value=5.9e+02 Score=27.85 Aligned_cols=172 Identities=9% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHcCChhhHHHHHhcCChHHHHHHhccCC---ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507 485 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNH---KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD 561 (684)
Q Consensus 485 L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~ 561 (684)
++.++...+.+.. .+-..|..+|...+ ++.+|...+.+|.-+ .+...+.-..++..++.++..++..
T Consensus 3 ~aqv~~~yp~~~a-----~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLL-----rNk~~i~~~~LL~lff~l~~~~dk~ 72 (616)
T KOG2229|consen 3 VAQVCPCYPEVLA-----NFPSELKDLLRTNHTVLPPELREKIVKALILL-----RNKNLIVAEDLLELFFPLLRCGDKN 72 (616)
T ss_pred hhhcccccHHHHH-----hhhHHHHHHHHhccccCCHHHHHHHHHHHHHH-----hccCcCCHHHHHHHHHHHHhcCchh
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHH
Q 035507 562 IKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVE 641 (684)
Q Consensus 562 v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~ 641 (684)
.|+-+..-+...+...+......=.+..+-..+..+|..+++.--.+++..+..+-+.+-+..
T Consensus 73 lRkllythiv~~Ikn~n~~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~d----------------- 135 (616)
T KOG2229|consen 73 LRKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWND----------------- 135 (616)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhccccc-----------------
Q ss_pred HhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCCCCCCCCCC
Q 035507 642 EAEGLEKIENLQSHDNNEIHEKSVKILETYWC-GRVVGPQLDLC 684 (684)
Q Consensus 642 ~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~-~e~~~~~~~~~ 684 (684)
...+..+..-.-|.++.|.-.+....=.|=. +|+.++.-+.|
T Consensus 136 -~~tV~i~~~acf~~~~ki~vs~l~FfL~~D~~dee~dsd~~~d 178 (616)
T KOG2229|consen 136 -SKTVNIITTACFSKVPKILVSGLRFFLGADNEDEEDDSDSESD 178 (616)
T ss_pred -chhHHHHHHHHhccCcHHHHhhhHHhccCCccccccccccccc
No 409
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=23.56 E-value=88 Score=33.68 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=45.6
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507 506 PCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS 574 (684)
Q Consensus 506 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~ 574 (684)
..+-.+..+. +++++.+|..+++|++.+....+...-+..+-..+++++....+++-+.++.|+.-+.
T Consensus 331 ~~lk~~~a~~-n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 331 KALKSLCAHK-NPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHhccc-ChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 3343444555 8999999999999998764222222223334456677777788888888888887665
No 410
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=23.45 E-value=1e+03 Score=26.22 Aligned_cols=233 Identities=12% Similarity=0.089 Sum_probs=115.4
Q ss_pred CChHHHHHhcCC-CChHHHHHHHHHHHHhhC---CCCCCc-------hhHhhcCCHHHHHHHhccC----C---chHHHH
Q 035507 334 DAVPIFVKLLAS-PSDDVREQAVWALGNVAA---DSSGCR-------DLVLSEGALIPLLAQLNEH----T---ELSMLR 395 (684)
Q Consensus 334 g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~---~~~~~r-------~~i~~~g~l~~Ll~~L~~~----~---~~~v~~ 395 (684)
.+|..+.++++. +...++.+|+|.||.+-- .+...| ..+.+...+...+.++... + .+...+
T Consensus 97 evir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvk 176 (589)
T PF11229_consen 97 EVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVK 176 (589)
T ss_pred HHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHH
Confidence 356777776654 677899999999998741 111111 1233445566666666322 1 233444
Q ss_pred HHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCc
Q 035507 396 IATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSP 475 (684)
Q Consensus 396 ~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~ 475 (684)
.+...+.......+-+ ......++..++++ .-.++++..++.....=+ .+......++..=+.|.++.-+..
T Consensus 177 vvl~~ia~vgeS~qyP-PVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQa--qSSqsAa~fLg~WlsPpli~sLs~--- 248 (589)
T PF11229_consen 177 VVLKPIATVGESYQYP-PVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQA--QSSQSAAMFLGSWLSPPLIHSLSV--- 248 (589)
T ss_pred HHHHHhhhcCCCCCCC-CccHHHHhhHHHhc--cccHHHHHHHHHHHHHhc--cccccHHHHHHhhcCcchhhhhhH---
Confidence 4444443332222111 11123333444443 224666666655443323 222334445554455555554433
Q ss_pred ccHhHHHHHHHHHH-cCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHH
Q 035507 476 SVLTPALWTVGNIV-MGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVN 553 (684)
Q Consensus 476 ~v~~~al~~L~nl~-~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ 553 (684)
..+..-+.-+.-.. .-.+++.+.+++.-++..+-..-... ++++...|...|+.-..- +|.+.-.-+=+.....+++
T Consensus 249 ~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~-~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekIF~ 327 (589)
T PF11229_consen 249 NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPS-NPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKIFD 327 (589)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH
Confidence 33444444444333 33445666665533333332222223 678888888888875542 3222221111345666666
Q ss_pred Hhc----cCCHhHHHHHHHHHHHhhc
Q 035507 554 LLQ----NAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 554 ll~----~~~~~v~~~a~~aL~nl~~ 575 (684)
++- ..+.++-...+.+|..+..
T Consensus 328 lLPn~i~~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 328 LLPNKIQRNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred hCcccccHHHHHHHHHHHHHHhhcCH
Confidence 663 3355666667777777764
No 411
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=23.32 E-value=6e+02 Score=23.48 Aligned_cols=150 Identities=14% Similarity=0.117 Sum_probs=78.9
Q ss_pred HHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh-cCChHHHHHH
Q 035507 464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA-CGNREQIQAV 542 (684)
Q Consensus 464 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~-~~~~~~~~~l 542 (684)
|.|+.+|+..+. .......|+.+...-.... ...+.|..+-|...+.+. +..-...|..+...++ .-..+.+..+
T Consensus 6 plLIsCL~~q~~--k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~-~~~e~~kA~~IF~~L~~~l~~efl~~~ 81 (174)
T PF04510_consen 6 PLLISCLTMQET--KESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSL-SENEPVKAFHIFICLPMPLYGEFLIPF 81 (174)
T ss_pred HHHHHHHHhhcc--cHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHh-hccchHHHHHHHHhCCchhhhhHHHHH
Confidence 567777765442 3444455555543221111 113556777777766553 2333466777777776 3455667777
Q ss_pred HHhCCHHHHHHHhccC-CHhHH--HHHH-HH---HHHhhcCCC-HHHHHHHHHCCChHHHHhhccCCCh-HHHHHHHHHH
Q 035507 543 IDAGLIGPLVNLLQNA-EFDIK--EEAA-WA---ISNASSRGT-HDQIKYLVTEGCIKPLCDLLQCADP-KIVTVCLEGL 613 (684)
Q Consensus 543 ~~~g~l~~Li~ll~~~-~~~v~--~~a~-~a---L~nl~~~~~-~~~~~~l~~~g~l~~L~~lL~~~~~-~v~~~al~~L 613 (684)
++. ++|...+.|.++ +.++. .-|. .+ ...+..... .+..+.+... .++.+.+++..+.. ..+..++.-+
T Consensus 82 ~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~-mv~Sv~elV~~g~E~~~l~rgl~~~ 159 (174)
T PF04510_consen 82 MEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPK-MVKSVKELVERGMEVGFLRRGLRDF 159 (174)
T ss_pred HHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 776 888888888766 22222 1111 11 222222221 2333333322 55566666666555 6666777766
Q ss_pred HHHHhc
Q 035507 614 ENILKV 619 (684)
Q Consensus 614 ~~il~~ 619 (684)
..++..
T Consensus 160 e~~v~~ 165 (174)
T PF04510_consen 160 ESFVSR 165 (174)
T ss_pred HHHHHH
Confidence 666653
No 412
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=23.26 E-value=7e+02 Score=24.24 Aligned_cols=81 Identities=11% Similarity=0.006 Sum_probs=52.0
Q ss_pred HHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCCh
Q 035507 439 CWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKN 518 (684)
Q Consensus 439 l~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~ 518 (684)
...|+.++ .+..-.+.+-+.+++..+..+....+. ..-..-++.++=.+.+...+. .|-+.|..+ +.
T Consensus 144 f~~IG~lS--~~~~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R~--------iLsKaLt~~-s~ 210 (226)
T PF14666_consen 144 FLFIGVLS--STPNGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPRI--------ILSKALTSG-SE 210 (226)
T ss_pred HHHHHHHh--CChhHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHHH--------HHHHHHhcC-CH
Confidence 44566776 556667778888999999998877532 122222455553333333332 355677777 88
Q ss_pred hHHHHHHHHHHHHh
Q 035507 519 SIKKEVSWIISNIA 532 (684)
Q Consensus 519 ~v~~~a~~~L~nl~ 532 (684)
.+|..|...|..+.
T Consensus 211 ~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 211 SIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887764
No 413
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=22.98 E-value=2.7e+02 Score=26.02 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=52.2
Q ss_pred HHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 035507 464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVI 543 (684)
Q Consensus 464 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 543 (684)
+.+.....+++.-++..+.-++........ ... ..++.+-.++.++ +..|++..+|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKET-DFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcc-cHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 667778888888888888777766654411 122 1344555555656 888999999999999987777665555
Q ss_pred Hh
Q 035507 544 DA 545 (684)
Q Consensus 544 ~~ 545 (684)
+.
T Consensus 181 ~~ 182 (197)
T cd06561 181 EK 182 (197)
T ss_pred HH
Confidence 43
No 414
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=22.67 E-value=5.8e+02 Score=23.13 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=53.5
Q ss_pred HHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHH-HhccCC--HhHHHHHHHHHHHhh
Q 035507 498 CIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVN-LLQNAE--FDIKEEAAWAISNAS 574 (684)
Q Consensus 498 ~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~-ll~~~~--~~v~~~a~~aL~nl~ 574 (684)
.++...+.+.+.+.+.++ ++.+-..++.++..+...-......-++. +++.++. ++..+. ...|..++.++..++
T Consensus 68 ~~lk~~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~~~~~Lk~ele~-~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSS-DFPIFSRSLRIFLTLLSRFRSHLKLELEV-FLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 355667888888888887 68888888999888875432332222222 3555555 555443 467777889999998
Q ss_pred cCCCHHHHH
Q 035507 575 SRGTHDQIK 583 (684)
Q Consensus 575 ~~~~~~~~~ 583 (684)
. ++....
T Consensus 146 ~--~p~~l~ 152 (168)
T PF12783_consen 146 K--DPQFLV 152 (168)
T ss_pred h--ChhHHH
Confidence 7 555443
No 415
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=22.26 E-value=4.9e+02 Score=22.10 Aligned_cols=70 Identities=19% Similarity=0.148 Sum_probs=45.6
Q ss_pred hhchHHHHHHHhc-CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHh-cCCCCccc-HhHHHHHHHHHHcCC
Q 035507 416 VRPALPALAQLIH-SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVEL-LGHPSPSV-LTPALWTVGNIVMGD 492 (684)
Q Consensus 416 ~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~~v-~~~al~~L~nl~~~~ 492 (684)
...++|.+.+.+. +..++.+..+...++.++ ...+ .+..++..+++. +.+..... ...++.++..++...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La-~k~~------L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLA-SKVP------LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH-hhcC------CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4567888999998 778999999999999998 3322 122233333333 23333222 478888888888544
No 416
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=21.32 E-value=5e+02 Score=21.83 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=48.8
Q ss_pred chHHHHHHhcCCCC--c--ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhc-C
Q 035507 461 GVCGRLVELLGHPS--P--SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIAC-G 534 (684)
Q Consensus 461 g~l~~L~~lL~~~~--~--~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~-~ 534 (684)
|++..+.+.+.+.+ . .-+..++++++.+......... .+.|.+...|++. ..++++..|..+-..+.. -
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 56666666666544 2 2378899999888764332222 3556666666543 255788888877777654 2
Q ss_pred ChHHHHHHHHh
Q 035507 535 NREQIQAVIDA 545 (684)
Q Consensus 535 ~~~~~~~l~~~ 545 (684)
+++....+++.
T Consensus 86 ~~~~l~~ll~~ 96 (107)
T smart00802 86 KEEELGPLLDQ 96 (107)
T ss_pred CHHHHHHHHHH
Confidence 44555555543
No 417
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.99 E-value=1.2e+03 Score=25.99 Aligned_cols=87 Identities=11% Similarity=0.183 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC
Q 035507 479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA 558 (684)
Q Consensus 479 ~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~ 558 (684)
..|+--++-++.+.+...+.+ +..+-.++..+ ++.+|+..-.+.+-+...+|.. +++..|-+....+
T Consensus 622 ~~a~Lg~AliamGedig~eMv-----lRhf~h~mhyg-~~hiR~~~PLa~gils~SnPQm-------~vfDtL~r~shd~ 688 (881)
T COG5110 622 SLALLGCALIAMGEDIGSEMV-----LRHFSHSMHYG-SSHIRSVLPLAYGILSPSNPQM-------NVFDTLERSSHDG 688 (881)
T ss_pred HHHHhhhHHhhhcchhhHHHH-----HHHhhhHhhcC-cHHHHHHHHHHHhcccCCCcch-------HHHHHHHHhcccc
Confidence 334444444556666444443 34566667777 8888888777777776666432 3667777888888
Q ss_pred CHhHHHHHHHHHHHhhcCCC
Q 035507 559 EFDIKEEAAWAISNASSRGT 578 (684)
Q Consensus 559 ~~~v~~~a~~aL~nl~~~~~ 578 (684)
+.++...+..+++-+-.+..
T Consensus 689 dl~v~~ntIfamGLiGAGT~ 708 (881)
T COG5110 689 DLNVIINTIFAMGLIGAGTL 708 (881)
T ss_pred chhHHHHHHHHhhccccCcc
Confidence 88888888888876655433
No 418
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.20 E-value=5.1e+02 Score=28.30 Aligned_cols=73 Identities=10% Similarity=0.034 Sum_probs=58.0
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--ChHHHHHHHHHHHHHHhc
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA--DPKIVTVCLEGLENILKV 619 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~--~~~v~~~al~~L~~il~~ 619 (684)
++..|.+-+.+.++.++..|+..|-.++..+...+-..+.+.++++-++...+.. +.+|+..++..|...-..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 4556667777788899999999888888877777777788889999988888754 677999999888776554
Done!