Query 035507
Match_columns 684
No_of_seqs 513 out of 2892
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 05:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 1.2E-62 4E-67 546.7 45.2 484 184-676 9-500 (529)
2 3ul1_B Importin subunit alpha- 100.0 2.4E-58 8.2E-63 509.1 45.6 459 208-677 17-482 (510)
3 4b8j_A Importin subunit alpha- 100.0 4.3E-54 1.5E-58 479.2 46.3 478 197-679 23-502 (528)
4 1wa5_B Importin alpha subunit; 100.0 8.9E-51 3E-55 452.5 41.3 475 199-678 30-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 2.4E-44 8.2E-49 392.3 42.9 425 250-678 21-448 (450)
6 3ul1_B Importin subunit alpha- 100.0 1.8E-39 6.1E-44 358.3 35.0 373 246-622 97-482 (510)
7 3tpo_A Importin subunit alpha- 100.0 3E-38 1E-42 350.5 39.6 373 246-622 116-501 (529)
8 1xm9_A Plakophilin 1; armadill 100.0 2.1E-38 7.3E-43 344.3 29.8 402 250-679 3-455 (457)
9 3now_A UNC-45 protein, SD10334 100.0 1.4E-38 4.7E-43 358.1 27.7 366 250-623 378-787 (810)
10 3nmz_A APC variant protein; pr 100.0 5.1E-38 1.7E-42 335.5 28.9 368 245-620 28-452 (458)
11 1jdh_A Beta-catenin; beta-cate 100.0 1.4E-35 4.9E-40 329.9 38.3 403 248-671 100-528 (529)
12 2z6h_A Catenin beta-1, beta-ca 100.0 2.3E-35 7.8E-40 335.6 38.5 406 248-676 97-550 (644)
13 4b8j_A Importin subunit alpha- 100.0 7.7E-35 2.6E-39 323.9 36.4 371 247-622 115-500 (528)
14 3now_A UNC-45 protein, SD10334 100.0 1.2E-35 4.1E-40 334.2 30.0 404 251-672 332-781 (810)
15 1wa5_B Importin alpha subunit; 100.0 1.6E-34 5.3E-39 321.5 38.6 372 247-622 128-514 (530)
16 2jdq_A Importin alpha-1 subuni 100.0 6.7E-35 2.3E-39 317.6 34.6 368 249-621 64-446 (450)
17 3l6x_A Catenin delta-1; cateni 100.0 7.6E-35 2.6E-39 317.5 28.8 364 249-620 48-478 (584)
18 2z6g_A B-catenin; FULL-length, 100.0 2.1E-32 7.2E-37 316.0 41.1 402 248-672 233-662 (780)
19 3nmz_A APC variant protein; pr 100.0 8.5E-34 2.9E-38 303.0 24.5 328 246-577 67-452 (458)
20 3l6x_A Catenin delta-1; cateni 100.0 4.2E-33 1.4E-37 303.8 29.6 370 288-676 45-479 (584)
21 1jdh_A Beta-catenin; beta-cate 100.0 5.4E-32 1.8E-36 301.1 29.7 403 249-673 59-489 (529)
22 2z6h_A Catenin beta-1, beta-ca 100.0 8.8E-31 3E-35 297.8 31.6 404 249-674 56-487 (644)
23 2z6g_A B-catenin; FULL-length, 100.0 2E-30 6.7E-35 299.6 30.8 402 249-672 192-621 (780)
24 1xm9_A Plakophilin 1; armadill 100.0 2.4E-30 8.2E-35 280.9 25.9 323 247-576 42-450 (457)
25 3nmw_A APC variant protein; AR 100.0 4.5E-29 1.5E-33 259.0 21.3 269 306-578 46-337 (354)
26 3nmw_A APC variant protein; AR 100.0 1.6E-28 5.3E-33 254.9 23.9 274 346-623 44-339 (354)
27 4hxt_A De novo protein OR329; 99.9 1.3E-25 4.4E-30 223.9 22.9 240 291-534 2-242 (252)
28 1xqr_A HSPBP1 protein; armadil 99.9 1.9E-25 6.6E-30 225.5 22.8 236 431-676 53-290 (296)
29 4hxt_A De novo protein OR329; 99.9 6.1E-25 2.1E-29 219.0 23.3 241 334-577 2-243 (252)
30 4db8_A Armadillo-repeat protei 99.9 1.3E-25 4.5E-30 224.2 18.4 239 291-533 12-251 (252)
31 4db8_A Armadillo-repeat protei 99.9 1.6E-25 5.4E-30 223.5 17.7 238 250-490 13-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 1.1E-22 3.8E-27 224.3 24.5 363 250-622 297-732 (778)
33 3opb_A SWI5-dependent HO expre 99.9 4.5E-23 1.5E-27 227.5 19.0 322 250-575 335-728 (778)
34 4db6_A Armadillo repeat protei 99.9 1.2E-21 4.2E-26 189.5 24.2 200 416-618 10-209 (210)
35 4db6_A Armadillo repeat protei 99.9 2.5E-21 8.7E-26 187.2 21.9 201 288-533 9-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 4.5E-21 1.5E-25 193.5 18.8 189 306-496 54-244 (296)
37 3tt9_A Plakophilin-2; cell adh 99.8 3.2E-20 1.1E-24 179.0 11.3 194 250-446 9-228 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 7.4E-20 2.5E-24 176.5 13.2 197 292-491 9-230 (233)
39 1b3u_A Protein (protein phosph 99.7 6.1E-16 2.1E-20 173.7 27.7 382 249-671 203-585 (588)
40 1b3u_A Protein (protein phosph 99.7 9.6E-16 3.3E-20 172.0 28.1 381 250-673 165-548 (588)
41 4fdd_A Transportin-1; heat rep 99.7 2E-17 6.7E-22 194.3 13.2 359 249-620 128-514 (852)
42 2vgl_B AP-2 complex subunit be 99.7 2.5E-15 8.4E-20 168.4 26.5 334 250-622 87-423 (591)
43 4fdd_A Transportin-1; heat rep 99.7 5.7E-16 1.9E-20 181.9 22.3 391 253-672 52-470 (852)
44 1oyz_A Hypothetical protein YI 99.7 3.2E-15 1.1E-19 151.2 21.2 259 288-615 20-279 (280)
45 3grl_A General vesicular trans 99.6 9E-14 3.1E-18 149.6 29.7 367 248-621 20-452 (651)
46 3grl_A General vesicular trans 99.6 7.5E-13 2.6E-17 142.5 32.2 410 249-673 60-550 (651)
47 2vgl_B AP-2 complex subunit be 99.6 1E-13 3.5E-18 155.2 25.9 330 250-619 50-383 (591)
48 1oyz_A Hypothetical protein YI 99.6 7.5E-14 2.6E-18 141.0 21.8 254 249-571 23-278 (280)
49 2bpt_A Importin beta-1 subunit 99.5 3.4E-13 1.2E-17 158.5 23.8 400 250-672 370-810 (861)
50 2bpt_A Importin beta-1 subunit 99.5 5E-13 1.7E-17 157.0 23.5 357 250-621 267-671 (861)
51 1qgr_A Protein (importin beta 99.5 1.4E-12 4.8E-17 153.6 27.1 406 250-671 367-825 (876)
52 1ibr_B P95, importin beta-1 su 99.5 9E-14 3.1E-18 150.9 13.9 360 250-622 36-441 (462)
53 1w63_A Adapter-related protein 99.5 1.4E-12 5E-17 146.4 23.2 327 249-620 107-453 (618)
54 1ibr_B P95, importin beta-1 su 99.5 8.6E-13 3E-17 143.2 20.7 390 251-673 3-437 (462)
55 1qgr_A Protein (importin beta 99.5 2.6E-12 8.8E-17 151.3 25.7 361 249-621 128-540 (876)
56 1u6g_C TIP120 protein, CAND1; 99.4 2E-11 6.9E-16 148.9 28.5 406 250-672 7-462 (1230)
57 1w63_A Adapter-related protein 99.4 1.4E-11 4.7E-16 138.4 22.0 324 250-619 71-415 (618)
58 3ltm_A Alpha-REP4; protein eng 99.4 2.1E-11 7.1E-16 117.4 19.3 187 333-576 18-204 (211)
59 3ltm_A Alpha-REP4; protein eng 99.4 1.6E-11 5.4E-16 118.2 18.4 187 290-534 18-204 (211)
60 3ltj_A Alpharep-4; protein eng 99.4 4.1E-11 1.4E-15 114.3 20.0 184 291-532 14-197 (201)
61 1u6g_C TIP120 protein, CAND1; 99.4 1.9E-11 6.7E-16 149.0 22.2 396 249-670 86-545 (1230)
62 3ltj_A Alpharep-4; protein eng 99.4 4.6E-11 1.6E-15 113.9 20.0 184 334-574 14-197 (201)
63 2vgl_A Adaptor protein complex 99.2 1.3E-08 4.4E-13 113.9 30.2 331 250-618 75-433 (621)
64 2vgl_A Adaptor protein complex 99.2 1.6E-09 5.6E-14 121.2 21.9 329 250-618 112-470 (621)
65 4gmo_A Putative uncharacterize 99.0 4.3E-09 1.5E-13 119.3 16.4 217 290-532 34-257 (684)
66 4ady_A RPN2, 26S proteasome re 99.0 4.5E-08 1.5E-12 110.8 24.1 307 250-614 393-715 (963)
67 2db0_A 253AA long hypothetical 98.9 9.4E-08 3.2E-12 84.6 18.2 217 332-575 30-246 (253)
68 3b2a_A TON_1937, putative unch 98.9 9.8E-08 3.3E-12 88.5 18.0 226 417-671 32-259 (265)
69 4gmo_A Putative uncharacterize 98.8 1.9E-08 6.6E-13 114.0 11.9 196 377-574 35-257 (684)
70 3tjz_B Coatomer subunit gamma; 98.7 3.2E-07 1.1E-11 93.7 18.0 301 309-668 45-348 (355)
71 3tjz_B Coatomer subunit gamma; 98.6 8.7E-07 3E-11 90.4 17.9 277 249-570 68-348 (355)
72 2db0_A 253AA long hypothetical 98.6 4E-06 1.4E-10 74.3 18.6 216 289-533 30-246 (253)
73 2qk2_A LP04448P; mini spindles 98.6 2.3E-07 8E-12 90.8 12.1 186 337-533 18-205 (242)
74 2qk2_A LP04448P; mini spindles 98.6 8.3E-07 2.8E-11 86.9 14.7 185 380-576 19-206 (242)
75 4ady_A RPN2, 26S proteasome re 98.6 1.4E-05 4.9E-10 90.6 26.4 272 292-620 393-678 (963)
76 1ho8_A Vacuolar ATP synthase s 98.5 2.2E-05 7.6E-10 81.8 25.0 321 333-671 76-474 (480)
77 2iw3_A Elongation factor 3A; a 98.5 3.1E-06 1.1E-10 97.1 20.1 308 246-575 11-324 (986)
78 2qk1_A Protein STU2; STU2P, XM 98.5 1.1E-06 3.8E-11 86.1 14.2 194 338-533 20-220 (249)
79 3b2a_A TON_1937, putative unch 98.5 2.4E-06 8.1E-11 79.3 14.7 184 250-446 34-217 (265)
80 1te4_A Conserved protein MTH18 98.4 8E-08 2.7E-12 84.3 1.7 122 289-445 10-131 (131)
81 2qk1_A Protein STU2; STU2P, XM 98.3 5.6E-06 1.9E-10 81.1 14.4 190 382-575 22-220 (249)
82 1te4_A Conserved protein MTH18 98.2 2.2E-07 7.6E-12 81.4 1.5 120 460-615 11-130 (131)
83 1ho8_A Vacuolar ATP synthase s 98.1 0.00028 9.5E-09 73.6 22.3 295 259-575 135-476 (480)
84 2iw3_A Elongation factor 3A; a 98.1 0.00039 1.3E-08 80.0 24.1 297 339-672 19-323 (986)
85 1wa5_C Importin alpha RE-expor 98.0 0.00022 7.4E-09 84.4 20.6 330 260-610 416-783 (960)
86 2x1g_F Cadmus; transport prote 97.9 0.00056 1.9E-08 81.0 23.2 291 307-619 436-761 (971)
87 1wa5_C Importin alpha RE-expor 97.9 0.00035 1.2E-08 82.6 20.9 258 307-575 376-670 (960)
88 4hat_C Exportin-1; heat repeat 97.9 0.0025 8.6E-08 74.9 26.5 343 252-621 197-621 (1023)
89 4hat_C Exportin-1; heat repeat 97.8 0.0082 2.8E-07 70.6 29.3 347 261-622 465-882 (1023)
90 3dad_A FH1/FH2 domain-containi 97.8 0.00049 1.7E-08 68.3 15.8 185 421-608 121-326 (339)
91 2x1g_F Cadmus; transport prote 97.8 0.00072 2.5E-08 80.1 20.5 300 306-623 478-819 (971)
92 3dad_A FH1/FH2 domain-containi 97.8 0.00031 1.1E-08 69.6 14.1 158 250-409 119-289 (339)
93 2x19_B Importin-13; nuclear tr 97.8 0.00062 2.1E-08 80.5 19.3 338 301-673 459-846 (963)
94 3m1i_C Exportin-1; heat repeat 97.7 0.0047 1.6E-07 73.7 25.7 154 463-621 453-621 (1049)
95 2x19_B Importin-13; nuclear tr 97.7 0.0036 1.2E-07 74.0 24.2 332 259-620 459-848 (963)
96 4ffb_C Protein STU2; tubulin f 97.6 0.0013 4.4E-08 65.4 15.3 188 250-446 11-211 (278)
97 3m1i_C Exportin-1; heat repeat 97.2 0.012 4.1E-07 70.1 20.6 305 262-578 247-621 (1049)
98 3ibv_A Exportin-T; karyopherin 97.2 0.0021 7.3E-08 75.4 13.0 308 256-578 200-569 (980)
99 3oc3_A Helicase MOT1, MOT1; re 97.1 0.00089 3E-08 70.1 7.8 243 249-528 174-431 (800)
100 3ibv_A Exportin-T; karyopherin 97.1 0.037 1.3E-06 64.9 22.7 343 307-672 458-869 (980)
101 3c2g_A SYS-1 protein; beta-cat 96.9 0.2 6.8E-06 49.3 21.5 372 250-671 189-616 (619)
102 4ffb_C Protein STU2; tubulin f 96.8 0.017 5.9E-07 57.1 14.6 186 381-576 14-213 (278)
103 2fv2_A RCD1 required for cell 96.7 0.054 1.9E-06 51.3 15.9 186 431-620 14-226 (268)
104 2of3_A ZYG-9; multifunctional 96.7 0.025 8.7E-07 54.8 14.2 132 388-533 98-236 (266)
105 2of3_A ZYG-9; multifunctional 96.7 0.017 5.8E-07 56.0 12.9 181 422-620 50-238 (266)
106 1upk_A MO25 protein; transfera 96.5 0.11 3.9E-06 51.3 17.0 201 329-533 73-283 (341)
107 1upk_A MO25 protein; transfera 96.3 0.38 1.3E-05 47.7 19.8 199 372-576 74-284 (341)
108 3gjx_A Exportin-1; transport, 96.3 0.72 2.5E-05 54.1 25.7 346 262-621 492-907 (1073)
109 3oc3_A Helicase MOT1, MOT1; re 96.2 0.028 9.6E-07 59.1 11.5 246 335-614 175-432 (800)
110 3gjx_A Exportin-1; transport, 96.2 0.69 2.4E-05 54.3 24.8 357 250-623 151-600 (1073)
111 1lrv_A LRV, leucine-rich repea 95.8 0.0049 1.7E-07 59.4 3.6 141 337-570 101-241 (244)
112 1lrv_A LRV, leucine-rich repea 95.5 0.0051 1.7E-07 59.3 2.6 164 253-528 78-241 (244)
113 3c2g_A SYS-1 protein; beta-cat 95.5 0.16 5.4E-06 50.0 12.5 164 434-601 259-450 (619)
114 2fv2_A RCD1 required for cell 95.0 1.3 4.4E-05 42.0 16.9 192 474-671 14-222 (268)
115 2f31_A Diaphanous protein homo 94.9 0.62 2.1E-05 44.3 15.2 153 254-408 5-182 (233)
116 3l9t_A Putative uncharacterize 94.9 0.34 1.2E-05 45.5 12.7 144 293-459 73-218 (240)
117 3l9t_A Putative uncharacterize 94.4 0.26 9.1E-06 46.2 10.6 143 378-544 72-218 (240)
118 3a6p_A Exportin-5; exportin-5, 94.4 11 0.00037 45.2 27.6 298 250-575 12-380 (1204)
119 2f31_A Diaphanous protein homo 94.2 0.4 1.4E-05 45.7 11.9 161 496-665 37-220 (233)
120 3eg5_B Protein diaphanous homo 94.0 1.5 5E-05 45.2 16.4 156 252-409 69-249 (383)
121 3u0r_A Apoptosis inhibitor 5; 93.9 2.6 8.9E-05 43.8 17.6 210 388-620 39-252 (507)
122 3u0r_A Apoptosis inhibitor 5; 93.8 1.2 4.1E-05 46.3 15.0 248 346-621 40-301 (507)
123 3a6p_A Exportin-5; exportin-5, 93.7 2.8 9.5E-05 50.3 20.6 284 305-619 26-381 (1204)
124 1lsh_A Lipovitellin (LV-1N, LV 93.5 1.3 4.3E-05 52.4 16.7 207 335-579 357-580 (1056)
125 1lsh_A Lipovitellin (LV-1N, LV 93.3 3.5 0.00012 48.6 20.1 243 250-537 312-580 (1056)
126 3ebb_A Phospholipase A2-activa 93.1 1.3 4.4E-05 43.9 13.7 172 294-472 106-287 (304)
127 3eg5_B Protein diaphanous homo 93.0 2.4 8.1E-05 43.6 16.0 160 495-663 102-284 (383)
128 3gs3_A Symplekin, LD45768P; he 92.9 6.8 0.00023 37.5 19.0 99 253-361 19-117 (257)
129 2bnx_A Diaphanous protein homo 91.8 3.2 0.00011 42.6 15.2 155 253-409 8-187 (386)
130 3ebb_A Phospholipase A2-activa 91.7 0.8 2.7E-05 45.4 10.2 154 251-407 105-264 (304)
131 2bnx_A Diaphanous protein homo 91.0 9 0.00031 39.3 17.6 139 517-663 71-222 (386)
132 3o2t_A Symplekin; heat repeat, 89.1 18 0.00062 36.8 17.6 88 264-361 40-127 (386)
133 1vdy_A Hypothetical protein (R 84.0 3.9 0.00013 35.0 8.0 78 590-679 50-136 (140)
134 3qml_C Protein SLS1, nucleotid 82.4 26 0.00089 34.1 13.9 149 419-575 23-189 (315)
135 3qml_C Protein SLS1, nucleotid 81.9 6.4 0.00022 38.3 9.4 135 476-618 43-189 (315)
136 4fcg_A Uncharacterized protein 80.0 1.5 5.1E-05 44.1 4.7 17 160-176 252-268 (328)
137 4fcg_A Uncharacterized protein 76.9 2.2 7.4E-05 42.9 4.8 55 137-193 255-309 (328)
138 1x5b_A Signal transducing adap 75.2 6.8 0.00023 34.6 7.0 70 590-671 53-123 (163)
139 3fga_B Serine/threonine-protei 75.0 43 0.0015 34.2 13.6 230 328-575 123-366 (403)
140 2npp_B PP2A, B subunit, serine 75.0 74 0.0025 33.0 15.6 233 325-575 153-399 (449)
141 3ldz_A STAM-1, signal transduc 73.7 5.9 0.0002 34.0 6.0 70 590-671 43-112 (140)
142 1mhq_A ADP-ribosylation factor 70.7 11 0.00038 32.6 7.1 70 590-671 39-114 (148)
143 3ldz_A STAM-1, signal transduc 69.7 9.2 0.00031 32.8 6.3 72 547-618 43-114 (140)
144 1juq_A ADP-ribosylation factor 69.3 11 0.00039 33.5 7.1 70 590-671 51-126 (171)
145 3g2s_A C-terminal fragment of 68.9 12 0.0004 32.5 6.8 70 590-671 49-124 (149)
146 3o2t_A Symplekin; heat repeat, 68.3 39 0.0013 34.3 11.6 131 477-619 41-184 (386)
147 4ezg_A Putative uncharacterize 67.2 8.1 0.00028 35.0 6.0 52 137-193 138-189 (197)
148 3g2s_A C-terminal fragment of 65.4 13 0.00046 32.1 6.5 73 547-619 49-127 (149)
149 1x5b_A Signal transducing adap 64.9 16 0.00055 32.1 7.1 72 547-618 53-125 (163)
150 1vsy_5 Proteasome activator BL 62.1 20 0.00067 41.7 9.0 186 335-532 134-364 (997)
151 1mhq_A ADP-ribosylation factor 61.7 25 0.00085 30.3 7.6 73 547-619 39-117 (148)
152 3gs3_A Symplekin, LD45768P; he 60.7 1.2E+02 0.0039 28.9 16.4 144 433-619 30-174 (257)
153 3zyq_A Hepatocyte growth facto 59.7 17 0.00057 34.1 6.6 70 590-671 46-116 (226)
154 4ezg_A Putative uncharacterize 58.7 12 0.00041 33.9 5.4 34 159-193 134-167 (197)
155 2npp_B PP2A, B subunit, serine 56.5 1.9E+02 0.0064 30.0 17.6 240 285-538 156-404 (449)
156 3fga_B Serine/threonine-protei 56.1 1.8E+02 0.0061 29.6 15.3 232 288-534 126-367 (403)
157 1juq_A ADP-ribosylation factor 55.8 25 0.00084 31.2 6.7 73 547-619 51-129 (171)
158 1dvp_A HRS, hepatocyte growth 55.7 22 0.00075 33.1 6.7 69 591-671 44-113 (220)
159 3zyq_A Hepatocyte growth facto 52.6 10 0.00035 35.5 3.8 73 249-321 45-118 (226)
160 1vsy_5 Proteasome activator BL 52.6 91 0.0031 36.2 12.4 191 412-619 127-366 (997)
161 3ut4_A CTHE_2751, putative unc 52.5 50 0.0017 27.8 7.5 95 547-674 32-131 (134)
162 3s4w_B Protein FACD2, fanconi 52.0 3.4E+02 0.012 32.3 17.0 133 475-620 324-469 (1323)
163 2ast_B S-phase kinase-associat 51.9 19 0.00066 35.5 6.1 35 159-193 245-280 (336)
164 3e4g_A ATP synthase subunit S, 51.1 3.8 0.00013 36.8 0.5 38 137-175 116-153 (176)
165 4fmz_A Internalin; leucine ric 49.5 38 0.0013 33.5 7.9 16 55-70 62-77 (347)
166 1dvp_A HRS, hepatocyte growth 46.7 14 0.00048 34.4 3.7 73 249-321 42-115 (220)
167 2ast_B S-phase kinase-associat 46.7 31 0.0011 34.0 6.7 13 159-171 270-282 (336)
168 2z66_A Variable lymphocyte rec 46.6 25 0.00085 34.2 5.9 35 159-193 173-207 (306)
169 4fmz_A Internalin; leucine ric 45.8 39 0.0013 33.4 7.3 16 55-70 173-188 (347)
170 2xpp_A IWS1, ECU08_0440; trans 45.6 74 0.0025 27.2 7.7 74 581-671 53-134 (145)
171 1elk_A Target of MYB1; superhe 45.1 49 0.0017 28.7 6.8 70 590-671 54-128 (157)
172 3gae_A Protein DOA1; UFD3, CDC 44.2 13 0.00043 35.6 3.0 108 257-367 98-221 (253)
173 2b6c_A Hypothetical protein EF 44.1 1.3E+02 0.0044 27.7 10.0 134 387-544 65-199 (220)
174 3pst_A Protein DOA1; protein d 43.7 51 0.0017 33.8 7.5 106 257-365 270-391 (425)
175 3bz5_A Internalin-J, INLJ; leu 41.4 16 0.00054 38.4 3.6 16 55-70 208-223 (457)
176 3s4w_B Protein FACD2, fanconi 40.6 2.2E+02 0.0076 33.9 13.1 205 347-567 323-541 (1323)
177 2jak_A Serine/threonine-protei 40.0 3.1E+02 0.011 27.7 13.9 80 328-408 168-247 (392)
178 3rfs_A Internalin B, repeat mo 39.9 52 0.0018 31.3 6.9 35 159-193 179-213 (272)
179 2xwt_C Thyrotropin receptor; s 39.6 11 0.00038 35.3 1.8 17 161-177 179-195 (239)
180 1vdy_A Hypothetical protein (R 39.4 60 0.0021 27.6 6.1 75 547-621 50-133 (140)
181 3l3f_X Protein DOA1, DOA1/UFD3 39.2 43 0.0015 33.7 6.1 106 257-365 207-328 (362)
182 2id5_A Lingo-1, leucine rich r 38.4 10 0.00035 39.9 1.5 35 159-193 198-232 (477)
183 3gae_A Protein DOA1; UFD3, CDC 35.6 78 0.0027 30.0 7.1 98 345-446 101-216 (253)
184 3zyj_A Leucine-rich repeat-con 34.4 30 0.001 35.8 4.4 15 55-69 84-98 (440)
185 3bz5_A Internalin-J, INLJ; leu 33.8 29 0.00099 36.3 4.1 16 55-70 229-244 (457)
186 1wjt_A Transcription elongatio 33.5 55 0.0019 26.1 4.7 36 637-672 47-83 (103)
187 1h6t_A Internalin B; cell adhe 33.2 84 0.0029 30.2 7.2 14 55-68 86-99 (291)
188 2p1m_B Transport inhibitor res 33.2 12 0.00041 40.6 1.0 35 159-193 209-243 (594)
189 2z63_A TOLL-like receptor 4, v 32.8 40 0.0014 36.1 5.2 8 58-65 324-331 (570)
190 1elk_A Target of MYB1; superhe 32.3 1.1E+02 0.0039 26.4 7.1 71 548-618 55-130 (157)
191 3pst_A Protein DOA1; protein d 31.5 61 0.0021 33.2 5.8 101 472-575 273-389 (425)
192 2p1m_B Transport inhibitor res 30.9 35 0.0012 36.8 4.3 34 159-193 287-322 (594)
193 4ecn_A Leucine-rich repeat pro 30.2 1.6E+02 0.0056 33.6 9.8 43 55-97 511-557 (876)
194 3rgz_A Protein brassinosteroid 29.3 46 0.0016 37.5 5.1 11 161-171 294-304 (768)
195 3m19_A Variable lymphocyte rec 28.8 55 0.0019 30.6 4.9 54 137-193 133-187 (251)
196 3nfq_A Transcription factor IW 28.7 1.9E+02 0.0066 25.3 7.7 73 582-671 69-149 (170)
197 1m9s_A Internalin B; cell inva 28.6 1.1E+02 0.0038 33.2 7.8 15 55-69 61-75 (605)
198 3l3f_X Protein DOA1, DOA1/UFD3 28.5 57 0.0019 32.7 4.9 100 472-575 210-326 (362)
199 3zyi_A Leucine-rich repeat-con 28.2 26 0.00088 36.5 2.5 15 55-69 95-109 (452)
200 2ra8_A Uncharacterized protein 27.7 51 0.0017 33.2 4.5 42 55-98 135-182 (362)
201 3zyj_A Leucine-rich repeat-con 27.2 39 0.0013 34.9 3.7 34 159-193 253-287 (440)
202 2z7x_B TOLL-like receptor 1, v 26.7 1.1E+02 0.0039 32.0 7.4 53 137-193 423-476 (520)
203 3jxy_A Alkylpurine DNA glycosy 26.5 2.4E+02 0.0084 26.0 8.8 142 381-546 65-208 (232)
204 1m9s_A Internalin B; cell inva 26.5 78 0.0027 34.4 6.1 16 55-70 83-98 (605)
205 2v9t_B SLIT homolog 2 protein 25.4 55 0.0019 30.0 4.1 34 159-193 126-160 (220)
206 3t6q_A CD180 antigen; protein- 25.2 65 0.0022 34.8 5.2 136 55-193 346-508 (606)
207 3ogk_B Coronatine-insensitive 25.1 90 0.0031 33.4 6.3 42 55-98 188-230 (592)
208 2o6s_A Variable lymphocyte rec 25.1 38 0.0013 30.6 2.8 12 56-67 49-60 (208)
209 1h6u_A Internalin H; cell adhe 24.8 1.8E+02 0.0062 28.0 8.0 13 159-171 171-183 (308)
210 2o6q_A Variable lymphocyte rec 24.5 1E+02 0.0036 29.0 6.0 34 159-193 179-213 (270)
211 1h6t_A Internalin B; cell adhe 24.5 1.7E+02 0.0059 27.9 7.7 16 55-70 64-79 (291)
212 3o6n_A APL1; leucine-rich repe 24.2 1.3E+02 0.0043 30.2 6.9 15 54-68 64-78 (390)
213 2z81_A CD282 antigen, TOLL-lik 23.8 1.7E+02 0.006 30.7 8.3 34 159-193 471-505 (549)
214 4atg_A TAF6; transcription, TF 23.7 4E+02 0.014 23.9 9.8 111 335-446 41-161 (196)
215 3rfs_A Internalin B, repeat mo 23.5 1.1E+02 0.0037 29.0 5.9 15 55-69 59-73 (272)
216 1inz_A EPS15-interacting porte 22.3 3.6E+02 0.012 22.9 8.6 76 591-677 61-144 (148)
217 3e6j_A Variable lymphocyte rec 22.2 50 0.0017 30.5 3.1 35 158-193 132-167 (229)
218 2z80_A TOLL-like receptor 2, v 22.0 38 0.0013 33.7 2.3 35 159-193 172-206 (353)
219 4glp_A Monocyte differentiatio 21.9 1.3E+02 0.0045 29.0 6.3 12 161-172 224-235 (310)
220 4ecn_A Leucine-rich repeat pro 21.8 1.3E+02 0.0045 34.3 7.0 32 159-193 804-835 (876)
221 1h6u_A Internalin H; cell adhe 21.2 1.6E+02 0.0053 28.5 6.7 33 159-193 193-225 (308)
222 1ogq_A PGIP-2, polygalacturona 21.1 1.1E+02 0.0039 29.6 5.6 33 160-192 243-275 (313)
223 1ozn_A Reticulon 4 receptor; N 20.9 89 0.003 29.7 4.7 145 38-193 59-209 (285)
224 3o53_A Protein LRIM1, AGAP0063 20.9 87 0.003 30.5 4.7 35 158-193 211-245 (317)
225 1w9c_A CRM1 protein, exportin 20.7 6E+02 0.02 24.8 17.9 138 477-622 45-200 (321)
226 2xpp_A IWS1, ECU08_0440; trans 20.5 3.7E+02 0.013 22.8 7.7 78 494-575 52-136 (145)
227 2v70_A SLIT-2, SLIT homolog 2 20.1 87 0.003 28.6 4.3 34 159-193 127-161 (220)
228 2z66_A Variable lymphocyte rec 20.1 88 0.003 30.1 4.5 34 160-193 222-256 (306)
229 2o6q_A Variable lymphocyte rec 20.0 91 0.0031 29.4 4.5 15 55-69 81-95 (270)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.2e-62 Score=546.70 Aligned_cols=484 Identities=41% Similarity=0.662 Sum_probs=403.6
Q ss_pred cccchhhhhccccc-chhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCCCCCCCCCCCCCccchhhhccHHHHHHHhcCC
Q 035507 184 APMLHKVQLKTWDK-EHSAWKDDLNTTIQQVNLKRE-SFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSD 261 (684)
Q Consensus 184 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~ 261 (684)
.|.-+.-.|++.+. .++..++|.+.++++||+||+ +++|||++.....+..................++.+++.++|+
T Consensus 9 ~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~l~s~ 88 (529)
T 3tpo_A 9 LPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINSN 88 (529)
T ss_dssp -----------------------------------CCSCSCCCCCC---------------CGGGSSCCHHHHHHHHTSS
T ss_pred CcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHHHHHHhcCC
Confidence 34333334443332 344567788999999999999 9999998754322211110010111112224689999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 035507 262 DNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFV 340 (684)
Q Consensus 262 ~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li 340 (684)
|++.|+.|+..++++++.+. ++++.+++.|++|.|+++|+..+++.+|.+|+|+|+||+.++++++..+++.|++|.|+
T Consensus 89 d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv 168 (529)
T 3tpo_A 89 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFI 168 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 99999999999999998776 88999999999999999998776699999999999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC----chHHHHHHHHHHHHhccCC-CCCChhh
Q 035507 341 KLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT----ELSMLRIATTTLSNLCRGK-PRPLFDQ 415 (684)
Q Consensus 341 ~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~----~~~v~~~a~~~L~nL~~~~-~~~~~~~ 415 (684)
.+|.+++..++++|+|+|+||+.+++.+|+.+.+.|++++|+.++.... ...+++.++|++++++++. +......
T Consensus 169 ~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 248 (529)
T 3tpo_A 169 SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 248 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 9999999999999999999999999999999999999999999996433 3467899999999999987 6667777
Q ss_pred hhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh
Q 035507 416 VRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 495 (684)
Q Consensus 416 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 495 (684)
..+++|.|+.++.+++++++.+++|+|++++ ..+++..+.+.+.|+++.|+.+|.++++.++.+|+++|+|++.+++..
T Consensus 249 ~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~-~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 327 (529)
T 3tpo_A 249 VEQILPTLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 327 (529)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh-hhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHH
Confidence 8999999999999999999999999999999 888889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 496 TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 496 ~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
+..+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++.+++.+++.|++|.|+.++.+++.+++++|+|+|+|++.
T Consensus 328 ~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 328 TQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC
Q 035507 576 RGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH 655 (684)
Q Consensus 576 ~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~ 655 (684)
++++++..+|++.|++++|+++|.+.|++++..++++|.+|++.++.. +..+.++..++++||+++|+.||+|
T Consensus 407 ~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~-------~~~~~~~~~iee~ggl~~ie~Lq~~ 479 (529)
T 3tpo_A 407 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL-------GETEKLSIMIEECGGLDKIEALQRH 479 (529)
T ss_dssp HSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHTTCHHHHTGGGGC
T ss_pred CCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc-------cChHHHHHHHHHCCcHHHHHHHHcC
Confidence 889999999999999999999999999999999999999999988765 3467899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCC
Q 035507 656 DNNEIHEKSVKILETYWCGRV 676 (684)
Q Consensus 656 ~~~~i~~~a~~ii~~~f~~e~ 676 (684)
+|.+||++|..||++||++||
T Consensus 480 ~n~~i~~~A~~iie~yf~~~~ 500 (529)
T 3tpo_A 480 ENESVYKASLNLIEKYFSVEE 500 (529)
T ss_dssp SSHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHHCCCcc
Confidence 999999999999999998654
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.4e-58 Score=509.09 Aligned_cols=459 Identities=43% Similarity=0.688 Sum_probs=393.9
Q ss_pred HHHHHHHHHHH-HHHhhhcCCCCCCCCCCCCCCCCccchhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHH
Q 035507 208 TTIQQVNLKRE-SFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIE 285 (684)
Q Consensus 208 ~~~~~r~~~r~-~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~ 285 (684)
..++.|+.+++ +..++++...++.+. ...+. .......-..++.+|+.++|+|++.|+.|+.++|+++|.+. |+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~ 94 (510)
T 3ul1_B 17 GMLETAAALFERNHMDSPDLGTDDDDL-AMADI-GSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID 94 (510)
T ss_dssp --------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHH
T ss_pred ccHHHHHHHHHhhccCCccccCCcccc-chhhh-ccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHH
Confidence 34567777666 666665554322221 11110 11111111368999999999999999999999999999876 8999
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC
Q 035507 286 EVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADS 365 (684)
Q Consensus 286 ~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~ 365 (684)
.+++.|++|.|+++|++++++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.+++..++++|+|+|+||+.++
T Consensus 95 ~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174 (510)
T ss_dssp HHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999999999987766899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHhhcCCHHHHHHHhccCC----chHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcCCcHHHHHHHHH
Q 035507 366 SGCRDLVLSEGALIPLLAQLNEHT----ELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACW 440 (684)
Q Consensus 366 ~~~r~~i~~~g~l~~Ll~~L~~~~----~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~ 440 (684)
+.+|+.+.+.|++++|+.++.... ...+++.++|++++++++. +........+++|.|+.++.+++++++..++|
T Consensus 175 ~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~ 254 (510)
T 3ul1_B 175 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 254 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999995432 3467889999999999987 66667777999999999999999999999999
Q ss_pred HHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhH
Q 035507 441 ALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSI 520 (684)
Q Consensus 441 ~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v 520 (684)
+|++++ ..+++..+.+.+.|+++.|+.+|.+++..++.+|+++|+|++.+++..+..+++.|+++.|+.+|.++ +..+
T Consensus 255 aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v 332 (510)
T 3ul1_B 255 AISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNI 332 (510)
T ss_dssp HHHHHT-SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHH
T ss_pred HHHHHh-hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHH
Confidence 999999 88888899999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC
Q 035507 521 KKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC 600 (684)
Q Consensus 521 ~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~ 600 (684)
++.|+|+|+|++++++++++.+++.|++|.|+.++.+++.+++++|+|+|+|++.+++.+++.+|++.|++++|+++|++
T Consensus 333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 035507 601 ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGRVV 677 (684)
Q Consensus 601 ~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e~~ 677 (684)
.|++++..++++|.+|++.+++. +..+.++..|+++||+++|+.||+|+|++||++|..||++||++||.
T Consensus 413 ~d~~i~~~~L~aL~nil~~~~~~-------~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 482 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQAAEKL-------GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 482 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHHHHHHhHhc-------cchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 99999999999999999988765 34678999999999999999999999999999999999999986643
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.3e-54 Score=479.23 Aligned_cols=478 Identities=74% Similarity=1.105 Sum_probs=401.7
Q ss_pred cchhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCCCCCCCCCCCCCccchhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035507 197 KEHSAWKDDLNTTIQQVNLKRE-SFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQK 275 (684)
Q Consensus 197 ~~~~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~L~~ 275 (684)
+.++..++|.+.++++||+||+ +++|||++....+. .+.... +.........++.+++.|.+++++.+..|+++|++
T Consensus 23 ~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~-~~~~~~-~~~~~~~~~~l~~lv~~L~s~~~~~~~~A~~~L~~ 100 (528)
T 4b8j_A 23 DAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQA-PVPASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRK 100 (528)
T ss_dssp ----CCCCC-----------------CCCC------------------------CHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCccc-cccccc-ccchhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344567888999999999999 99999997532221 000000 11111223578999999999999999999999999
Q ss_pred HhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHH
Q 035507 276 LLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQA 354 (684)
Q Consensus 276 l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a 354 (684)
+++... ++...+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+++.|+.+|.++++.++++|
T Consensus 101 l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a 180 (528)
T 4b8j_A 101 LLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 180 (528)
T ss_dssp HHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred HhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHH
Confidence 998876 8899999999999999999987668999999999999999889999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHH
Q 035507 355 VWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQV 434 (684)
Q Consensus 355 ~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v 434 (684)
+|+|+||+.+.+.+++.+...|++++|+.++..+.+..+++.++|+|++|+...+........+++|.|+.++.++++++
T Consensus 181 ~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 260 (528)
T 4b8j_A 181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEV 260 (528)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999998888899999999999999997778899999999999999999877777788999999999999999999
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc
Q 035507 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 514 (684)
Q Consensus 435 ~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~ 514 (684)
+..++|+|++++ ...+...+.+.+.|+++.|+.+|.++++.++..|+++|+|++.+++...+.+++.|+++.|+.+|.+
T Consensus 261 ~~~a~~aL~~l~-~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 339 (528)
T 4b8j_A 261 LTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ 339 (528)
T ss_dssp HHHHHHHHHHHT-SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC
Confidence 999999999999 8888888899999999999999999999999999999999999999899999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHH
Q 035507 515 NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPL 594 (684)
Q Consensus 515 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L 594 (684)
+.++.++++|+|+|+|++.+++++++.+++.|++|.|+.++.+++++++..|+|+|+|++..++++...++++.|++++|
T Consensus 340 ~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 419 (528)
T 4b8j_A 340 NLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419 (528)
T ss_dssp CCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence 65789999999999999999989999999999999999999999999999999999999998789999999999999999
Q ss_pred HhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 035507 595 CDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCG 674 (684)
Q Consensus 595 ~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~ 674 (684)
++++.+.+++++..++++|.+++..++....... ...++|+..++++||+++|+.|++|+|++|+++|..|+++||+.
T Consensus 420 ~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 420 CDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999998765321100 13467999999999999999999999999999999999999988
Q ss_pred CCCCC
Q 035507 675 RVVGP 679 (684)
Q Consensus 675 e~~~~ 679 (684)
|+.++
T Consensus 498 e~~~~ 502 (528)
T 4b8j_A 498 EEDDT 502 (528)
T ss_dssp -----
T ss_pred ccccc
Confidence 66543
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=8.9e-51 Score=452.45 Aligned_cols=475 Identities=51% Similarity=0.734 Sum_probs=414.5
Q ss_pred hhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCC---CCCCCCCCC--CCCccch-hhhccHHHHHHHhcCCCHHHHHHHHH
Q 035507 199 HSAWKDDLNTTIQQVNLKRE-SFIKKRREGLQ---SQSYLPSAL--APSINLH-TKLEILPMMVAGVWSDDNNLQLEATT 271 (684)
Q Consensus 199 ~~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~---~~~~~~~~~--~~~~~~~-~~~~~l~~lv~~L~s~~~~~~~~a~~ 271 (684)
++..++|.+.++++||+||+ ++.|||++... ....++... ....... ...+.++.+++.|++++++.+..|++
T Consensus 30 ~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~s~~~~~~~~A~~ 109 (530)
T 1wa5_B 30 DELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATV 109 (530)
T ss_dssp -CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHHHHHHSCSSHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44567888899999999999 99999998542 111000000 0000111 12357999999999999999999999
Q ss_pred HHHHHhcCC-CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHH
Q 035507 272 QFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDV 350 (684)
Q Consensus 272 ~L~~l~s~~-~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v 350 (684)
+|+++++.. .+++..+++.|++|.|+++|.+++++.+|..|+|+|++++.++++.+..+++.|+++.|+.+|.++++.+
T Consensus 110 ~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v 189 (530)
T 1wa5_B 110 KFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 189 (530)
T ss_dssp HHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHH
T ss_pred HHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 999998875 4778889999999999999998734899999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcC
Q 035507 351 REQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHS 429 (684)
Q Consensus 351 ~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~ 429 (684)
++.|+|+|++++.+.+..++.+...|++++|+.++. +.+..++..++|+|++++.+. +........+++|.|+.++.+
T Consensus 190 r~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~ 268 (530)
T 1wa5_B 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 268 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG-SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC
Confidence 999999999999988888888899999999999994 588899999999999999987 666777779999999999999
Q ss_pred CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHH
Q 035507 430 NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL 509 (684)
Q Consensus 430 ~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~ 509 (684)
+++.++..++|+|++++ ...++..+.+.+.|+++.|+.+|.++++.++..|+++|++++.+++...+.+++.|+++.|+
T Consensus 269 ~d~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 347 (530)
T 1wa5_B 269 MDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALR 347 (530)
T ss_dssp CCHHHHHHHHHHHHHHH-SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh-CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHH
Confidence 99999999999999999 88888888899999999999999999999999999999999999998889999999999999
Q ss_pred HHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCH--HHHHHHHH
Q 035507 510 ALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVT 587 (684)
Q Consensus 510 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~--~~~~~l~~ 587 (684)
.+|.++ ++.+++.|+|+|+|++.+++++++.+++.|++|.|+.++.+++++++..|+|+|+|++..+++ ++..++.+
T Consensus 348 ~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~ 426 (530)
T 1wa5_B 348 LLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVS 426 (530)
T ss_dssp HHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHH
T ss_pred HHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999998 999999999999999998889999999999999999999999999999999999999987766 88899999
Q ss_pred CCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHH
Q 035507 588 EGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667 (684)
Q Consensus 588 ~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~i 667 (684)
.|+++.|+.++.+.+++++..++++|.+++..++...... .+..++++..++++||+++|+.|++|++++|+++|..+
T Consensus 427 ~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~i 504 (530)
T 1wa5_B 427 QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR--GLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 504 (530)
T ss_dssp TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--TCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcc--cccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999876531100 01245799999999999999999999999999999999
Q ss_pred HHHhcCCCCCC
Q 035507 668 LETYWCGRVVG 678 (684)
Q Consensus 668 i~~~f~~e~~~ 678 (684)
|++||.+++.+
T Consensus 505 l~~~~~~~~~~ 515 (530)
T 1wa5_B 505 IETYFGEEEDA 515 (530)
T ss_dssp HHHHSSSCC--
T ss_pred HHHHCCccccc
Confidence 99999876653
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.4e-44 Score=392.33 Aligned_cols=425 Identities=56% Similarity=0.844 Sum_probs=384.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-CCCcHHHHHHc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSI-ESMPIEEVIES-GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~-~~~~~~~ii~~-g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
.++.+++.++++++.++..|+..|+++++. ..++.+.+++. |++|.|+++|++++++.+|..|+++|.+++.++++.+
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 378999999999999999999999998874 34667778888 9999999999988448999999999999999888888
Q ss_pred HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
..+++.|+++.|+.+|.++++.+++.|+++|++++.+.+..++.+...|+++.++.++..+.+..++..++|+|++++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999999999999988778888889999999999996567899999999999999988
Q ss_pred C-CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHH
Q 035507 408 K-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVG 486 (684)
Q Consensus 408 ~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 486 (684)
. +........+++|.++.++.++++.++..++|+|++++ ...++....+.+.|+++.|+.++.++++.++..|+++|+
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS-DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHT-SSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH-CCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence 6 55556666999999999999999999999999999999 777778888889999999999999999999999999999
Q ss_pred HHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHH
Q 035507 487 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEA 566 (684)
Q Consensus 487 nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a 566 (684)
+++.+.+...+.+++.|+++.|+.++.++ ++.+|+.|+|+|+|++.++++..+.+++.|++|.|+.++.+++++++..|
T Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a 338 (450)
T 2jdq_A 260 NIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA 338 (450)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 99999988888899999999999999998 99999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchH
Q 035507 567 AWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGL 646 (684)
Q Consensus 567 ~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 646 (684)
+|+|+|++.+++++..+++.+.|+++.|++++.+.+++++..++++|.+++..++...... ....++|+..+.+.||+
T Consensus 339 ~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~g~~ 416 (450)
T 2jdq_A 339 AWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN--GTGINPYCALIEEAYGL 416 (450)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS--CSCCCHHHHHHHHHHCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc--ccchhHHHHHHHHcCcH
Confidence 9999999987778888999999999999999999999999999999999998765432100 01245799999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 035507 647 EKIENLQSHDNNEIHEKSVKILETYWCGRVVG 678 (684)
Q Consensus 647 ~~L~~L~~~~~~~i~~~a~~ii~~~f~~e~~~ 678 (684)
++|..|++|++++|+++|..++++||++|+.+
T Consensus 417 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 417 DKIEFLQSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 99999999999999999999999999887754
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.8e-39 Score=358.27 Aligned_cols=373 Identities=27% Similarity=0.398 Sum_probs=332.4
Q ss_pred hhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507 246 TKLEILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS 324 (684)
Q Consensus 246 ~~~~~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~ 324 (684)
.+.|.+|.|+++|++ +++.+|..|+|+|.++++..+.....+++.|++|.|+++|++++ ++++..|+|+|+||+.+++
T Consensus 97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~ 175 (510)
T 3ul1_B 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGS 175 (510)
T ss_dssp HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCH
Confidence 356899999999975 56899999999999999988788899999999999999999988 8999999999999999889
Q ss_pred hhHHHHHhcCChHHHHHhcCCCC-----hHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHH
Q 035507 325 ENTKVVIEHDAVPIFVKLLASPS-----DDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATT 399 (684)
Q Consensus 325 ~~~~~i~~~g~i~~Li~lL~~~~-----~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~ 399 (684)
+.+..+.+.|+++.|+.++.+++ ..+.+.++|+|+|++.............++++.|+.++ .+.+.+++..++|
T Consensus 176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~ 254 (510)
T 3ul1_B 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCW 254 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHH
Confidence 99999999999999999998754 35788999999999987766566666677889999988 7788899999999
Q ss_pred HHHHhccCCCCC-ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccH
Q 035507 400 TLSNLCRGKPRP-LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVL 478 (684)
Q Consensus 400 ~L~nL~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~ 478 (684)
+|++|+...... ......+++|.|+.++.++++.++..+++++++++ .+++.....+++.|+++.|+.+|.++++.++
T Consensus 255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~-~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~ 333 (510)
T 3ul1_B 255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV-TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 333 (510)
T ss_dssp HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTGGGGCC-CTTCSSHHHH
T ss_pred HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhh-cCCHHHHHHHhhccchHHHHHHhcCCCHHHH
Confidence 999999876322 23345789999999999999999999999999999 8899999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhcc
Q 035507 479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQN 557 (684)
Q Consensus 479 ~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~ 557 (684)
..|+++|+|++.+++.+.+.+++.|++|.|+.++.++ +..+|++|+|+|+|++. ++.+++..+++.|+++.|+++|..
T Consensus 334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 9999999999999999999999999999999999999 99999999999999987 678899999999999999999999
Q ss_pred CCHhHHHHHHHHHHHhhcC----C-CHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 558 AEFDIKEEAAWAISNASSR----G-THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 558 ~~~~v~~~a~~aL~nl~~~----~-~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
.+++++..++++|.|++.. + .......+.+.|+++.|..+..+++.++...+..+|.+++..++.
T Consensus 413 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 482 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 482 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 9999999999999999852 2 233455567899999999999999999999999999999976543
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3e-38 Score=350.50 Aligned_cols=373 Identities=26% Similarity=0.391 Sum_probs=332.6
Q ss_pred hhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507 246 TKLEILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS 324 (684)
Q Consensus 246 ~~~~~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~ 324 (684)
.+.|.+|.|++.|.+ +++.+|..|+++|.++++........+++.|++|.|+.+|.+++ ++++..|+|+|+||+.+++
T Consensus 116 i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~ 194 (529)
T 3tpo_A 116 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGS 194 (529)
T ss_dssp HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCH
Confidence 456899999999974 56999999999999999987778889999999999999999988 8999999999999999899
Q ss_pred hhHHHHHhcCChHHHHHhcCCCC-----hHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHH
Q 035507 325 ENTKVVIEHDAVPIFVKLLASPS-----DDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATT 399 (684)
Q Consensus 325 ~~~~~i~~~g~i~~Li~lL~~~~-----~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~ 399 (684)
+.+..+++.|+++.|+.+|..++ ..+.+.++|+|+|++.+...........++++.|+.++ .+.+.+++..++|
T Consensus 195 ~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~ 273 (529)
T 3tpo_A 195 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCW 273 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHH
Confidence 99999999999999999998754 35788999999999988766566666677889999988 7788999999999
Q ss_pred HHHHhccCCCC-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccH
Q 035507 400 TLSNLCRGKPR-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVL 478 (684)
Q Consensus 400 ~L~nL~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~ 478 (684)
+|++++.+... .......+++|.|+.++.++++.++..++++|++++ .+++.....+++.|+++.|+.+|.++++.++
T Consensus 274 aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~-~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~ 352 (529)
T 3tpo_A 274 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV-TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 352 (529)
T ss_dssp HHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTGGGGHHHHTTCSSHHHH
T ss_pred HHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH-ccchHHHHHHhhcccHHHHHHHHcCCCHHHH
Confidence 99999987632 223345889999999999999999999999999999 8899999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhcc
Q 035507 479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQN 557 (684)
Q Consensus 479 ~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~ 557 (684)
..|+++|+|++.+++.+.+.+++.|++|.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|..
T Consensus 353 ~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 353 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC
Confidence 9999999999999999999999999999999999999 99999999999999987 678899999999999999999999
Q ss_pred CCHhHHHHHHHHHHHhhcC----CC-HHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 558 AEFDIKEEAAWAISNASSR----GT-HDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 558 ~~~~v~~~a~~aL~nl~~~----~~-~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
.|++++..++++|.|++.. +. ......+.+.|+++.|..+..+++.++...|..+|.+++..++.
T Consensus 432 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 501 (529)
T 3tpo_A 432 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 501 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 9999999999999999752 22 33445567899999999999999999999999999999875443
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.1e-38 Score=344.28 Aligned_cols=402 Identities=17% Similarity=0.164 Sum_probs=317.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.+|.+++.|+++++++|..|+++|++++..+++....+++.|++|.|+++|++++ +.+|..|+|+|.||+.++++++..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5789999999999999999999999988666556668999999999999999887 899999999999999988999999
Q ss_pred HHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc--------C-------CchHH
Q 035507 330 VIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE--------H-------TELSM 393 (684)
Q Consensus 330 i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~--------~-------~~~~v 393 (684)
+++.|++|.|+++|. ++++++++.|+|+|+||+.+ +..|..+.+ |++++|+.++.. . .+..+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 999999999999999 78999999999999999998 667888888 999999999931 1 35678
Q ss_pred HHHHHHHHHHhccCCCCCChhhh-h-chHHHHHHHhcC------CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHH
Q 035507 394 LRIATTTLSNLCRGKPRPLFDQV-R-PALPALAQLIHS------NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGR 465 (684)
Q Consensus 394 ~~~a~~~L~nL~~~~~~~~~~~~-~-~~l~~L~~lL~~------~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~ 465 (684)
+++|+|+|+|||.. +....... . |++|.|+.++.+ .+..++.+++++|.+++ .... .... .....
T Consensus 160 ~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs-~~~~----~~~~-~~~~~ 232 (457)
T 1xm9_A 160 FFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS-YRLD----AEVP-TRYRQ 232 (457)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT-TTHH----HHSC-CHHHH
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc-cchh----ccCc-chhhh
Confidence 88999999999987 32222222 3 999999999985 46678899999999998 3211 0111 11111
Q ss_pred HHHhcCCCCcccHhHHHHHHHHHHc---------------CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507 466 LVELLGHPSPSVLTPALWTVGNIVM---------------GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN 530 (684)
Q Consensus 466 L~~lL~~~~~~v~~~al~~L~nl~~---------------~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 530 (684)
+...+..... ......++++... ..+...+.+++.|+++.|+.+|.++.++.+++.|+|+|+|
T Consensus 233 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~n 310 (457)
T 1xm9_A 233 LEYNARNAYT--EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310 (457)
T ss_dssp HHHTC------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cccccccccc--cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 2222211000 1111222222211 1234566777889999999999877578999999999999
Q ss_pred HhcCChH---HH-HHHH-HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCh--
Q 035507 531 IACGNRE---QI-QAVI-DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADP-- 603 (684)
Q Consensus 531 l~~~~~~---~~-~~l~-~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~-- 603 (684)
+++++.. .+ +.++ +.|++|.|+++|.+++.+++++|+|+|.|++.. . ....++..|++++|+++|...++
T Consensus 311 l~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~-~~~~~i~~~~i~~Lv~lL~~~~~~~ 387 (457)
T 1xm9_A 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P-LLHRVMGNQVFPEVTRLLTSHTGNT 387 (457)
T ss_dssp HTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G-GGHHHHHHHTHHHHHHTTTSCCSCS
T ss_pred hccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H-HHHHHHHHhhhHHHHHhccCCCCCC
Confidence 9986533 23 4444 689999999999999999999999999999873 3 34556677899999999998754
Q ss_pred ----HHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCCCC
Q 035507 604 ----KIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD-NNEIHEKSVKILETYWCGRVVG 678 (684)
Q Consensus 604 ----~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~-~~~i~~~a~~ii~~~f~~e~~~ 678 (684)
+++..++.+|.+++..+. .+...+.++||+++|.+|+.|+ ++++|++|..+|..||.+.+..
T Consensus 388 ~~~~~v~~~~l~~l~ni~~~~~-------------~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 388 SNSEDILSSACYTVRNLMASQP-------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCT-------------HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred CCcHHHHHHHHHHHHHHHhcCH-------------HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 688899999999986543 2578899999999999999999 9999999999999999998875
Q ss_pred C
Q 035507 679 P 679 (684)
Q Consensus 679 ~ 679 (684)
.
T Consensus 455 ~ 455 (457)
T 1xm9_A 455 G 455 (457)
T ss_dssp S
T ss_pred c
Confidence 4
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-38 Score=358.09 Aligned_cols=366 Identities=16% Similarity=0.128 Sum_probs=319.4
Q ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch-
Q 035507 250 ILPMMVAGVWSD--DNNLQLEATTQFQKLLSIESMPIEEVI-ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE- 325 (684)
Q Consensus 250 ~l~~lv~~L~s~--~~~~~~~a~~~L~~l~s~~~~~~~~ii-~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~- 325 (684)
.++.++++|.++ |.+++..|+++|..+... ++....++ +.|++|.|+++|++++ +.++..|+|+|+||+.++++
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhh
Confidence 478899999987 899999999999996554 34455555 5799999999999887 89999999999999986531
Q ss_pred ----------------------------hH---HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh
Q 035507 326 ----------------------------NT---KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS 374 (684)
Q Consensus 326 ----------------------------~~---~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~ 374 (684)
.+ +.+++.|++|.|+.+|.++++.++++|+|+|+||+++.+ +|+.+.+
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~-~r~~Vv~ 534 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE-LRGKVVQ 534 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH-HHHHHHH
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHH
Confidence 22 688899999999999999999999999999999998754 7999999
Q ss_pred cCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCCh--hhhhchHHHHHHHhcCCc-HHHHHHHHHHHHhhccCCC
Q 035507 375 EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLF--DQVRPALPALAQLIHSND-EQVLTDACWALFGLSGDRN 450 (684)
Q Consensus 375 ~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~--~~~~~~l~~L~~lL~~~d-~~v~~~al~~L~~L~~~~~ 450 (684)
.|++++|+.++ .+.+...++.|+|+|++++.+. +...+ ....+++|.|+.+|.++. ...+..|+++|.|++ ..+
T Consensus 535 ~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa-~~~ 612 (810)
T 3now_A 535 EGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA-SMN 612 (810)
T ss_dssp TTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT-TSC
T ss_pred CCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh-cCC
Confidence 99999999999 5667788999999999999764 22111 123568999999998663 445678999999999 888
Q ss_pred hHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHh-cCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507 451 NDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALLIHNHKNSIKKEVSWIIS 529 (684)
Q Consensus 451 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~-~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 529 (684)
++..+.+++.|+++.|+.++.++++.++.+|+++|+|++.+.+.+.+ +++ .|.++.|+.++.++ +..+|++|+|+|+
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~-~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALa 690 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDE-DEETATACAGALA 690 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH-HHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH-HHhccCcHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999987764444 444 79999999999998 9999999999999
Q ss_pred HHhcCChHHHHHHHH-hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC---ChHH
Q 035507 530 NIACGNREQIQAVID-AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA---DPKI 605 (684)
Q Consensus 530 nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~---~~~v 605 (684)
|++.+++.+++.+++ .|++|.|++++.+++.++++.|+|++.|++. ++.++..++.+.|++++|+++++.. ++++
T Consensus 691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~-~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i 769 (810)
T 3now_A 691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN-AGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769 (810)
T ss_dssp HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT-TCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHH
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCCHHHHHHHHhCcccCcHHH
Confidence 999988899999998 8999999999999999999999999999998 4678899999999999999999755 7899
Q ss_pred HHHHHHHHHHHHhccccc
Q 035507 606 VTVCLEGLENILKVGEAE 623 (684)
Q Consensus 606 ~~~al~~L~~il~~~~~~ 623 (684)
+..++++|.++++++.-.
T Consensus 770 ~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 770 REVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCCCcc
Confidence 999999999999987654
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=335.54 Aligned_cols=368 Identities=19% Similarity=0.201 Sum_probs=297.1
Q ss_pred hhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCC-----------HHHHHHHH
Q 035507 245 HTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDY-----------PQLQFQAA 313 (684)
Q Consensus 245 ~~~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~-----------~~v~~~A~ 313 (684)
..+++.++.++..+.+.|.+. ..+.|..+ +.+++.+..+++.|++|.|+++|+..+. +++|.+|+
T Consensus 28 ~~~~~~~~~l~~~~~~~~~~~---~~~~ll~~-~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~ 103 (458)
T 3nmz_A 28 GTKVEMVYSLLSMLGTHDKDD---MSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS 103 (458)
T ss_dssp -----------------CCHH---HHHHHHHH-HSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred CchHHHHHHHHHHhcCCCHHH---HHHHHHHH-HcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence 345567899999999888773 33344332 2233555889999999999999987532 79999999
Q ss_pred HHHHHHhcCCchhHHHHHhcCCh----------HHHHHhcCCCC--hH-----HHH-------HHHHHHHHhhCCCCCCc
Q 035507 314 WALTNIASGTSENTKVVIEHDAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNVAADSSGCR 369 (684)
Q Consensus 314 ~~L~~l~~~~~~~~~~i~~~g~i----------~~Li~lL~~~~--~~-----v~~-------~a~~~L~nLa~~~~~~r 369 (684)
|+|+||+.++++.+....+.|++ +.+++++.++. .+ +++ +|+|+|+|++.+ +.+|
T Consensus 104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R 182 (458)
T 3nmz_A 104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR 182 (458)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence 99999999999999999998888 77777777642 22 555 999999999877 6679
Q ss_pred hhHhhcCCHHHHHHHhcc----------CCchHHHHHHHHHHHHhccCCCCCChhh--hhchHHHHHHHhcCCcHHHHHH
Q 035507 370 DLVLSEGALIPLLAQLNE----------HTELSMLRIATTTLSNLCRGKPRPLFDQ--VRPALPALAQLIHSNDEQVLTD 437 (684)
Q Consensus 370 ~~i~~~g~l~~Ll~~L~~----------~~~~~v~~~a~~~L~nL~~~~~~~~~~~--~~~~l~~L~~lL~~~d~~v~~~ 437 (684)
+.+.+.|++++|+.++.. ..+..+++.|+|+|.|||.+.+...... ..+++|.|+.+|.+++++++..
T Consensus 183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~ 262 (458)
T 3nmz_A 183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 262 (458)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHH
Confidence 999999999999999942 2346789999999999998863222222 3667999999999999999999
Q ss_pred HHHHHHhhccCC-ChHHHHHHHHhchHHHHHHhc-CCCCcccHhHHHHHHHHHHcCChhhHHHHH-hcCChHHHHHHhcc
Q 035507 438 ACWALFGLSGDR-NNDKIQAVIEAGVCGRLVELL-GHPSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALLIH 514 (684)
Q Consensus 438 al~~L~~L~~~~-~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~i-~~g~l~~L~~lL~~ 514 (684)
|+|+|+|++ .. +++....+.+.|+++.|+++| .+.++.++..|+.+|+|++.++++....+. ..|++|.|+.+|.+
T Consensus 263 A~~aL~nLs-~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 263 IASVLRNLS-WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHT-SSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999 64 567888999999999999975 557788999999999999986655555565 79999999999987
Q ss_pred CCCh----hHHHHHHHHHHHHhc---CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 035507 515 NHKN----SIKKEVSWIISNIAC---GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVT 587 (684)
Q Consensus 515 ~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 587 (684)
. +. .+++.|+|+|.|++. +++++++.+++.|++|.|+.+|.+++.+++++|+|+|.|++. +++++...+.+
T Consensus 342 ~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~-~~~~~~~~i~~ 419 (458)
T 3nmz_A 342 R-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RNPKDQEALWD 419 (458)
T ss_dssp C-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS-SCHHHHHHHHH
T ss_pred C-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 7 43 499999999999996 788999999999999999999999999999999999999986 37889999999
Q ss_pred CCChHHHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507 588 EGCIKPLCDLLQCADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 588 ~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~ 620 (684)
.|++++|++++.+.+++++..+.++|.+++...
T Consensus 420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999865
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.4e-35 Score=329.93 Aligned_cols=403 Identities=17% Similarity=0.167 Sum_probs=344.3
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
.|.++.+++.++++++.++..|+++|.+++...+.....+++.|++|.|++++.+++ ++++..++.+|.+++.++++.+
T Consensus 100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 478999999999999999999999999999887677888889999999999999987 8999999999999999889999
Q ss_pred HHHHhcCChHHHHHhcCCC-ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507 328 KVVIEHDAVPIFVKLLASP-SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR 406 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~-~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~ 406 (684)
..+.+.|+++.|+.++.++ ....+..+..+|.+++... ..+..+.+.|+++.++.++ .+.+..+++.++|+|.+++.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999874 4567778899999999754 5688888999999999999 55588999999999999999
Q ss_pred CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC--CCcccHhHHHHH
Q 035507 407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH--PSPSVLTPALWT 484 (684)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~ 484 (684)
..+.. ....+++|.+++++.+++++++..++++|++++ ..+++..+.+.+.|+++.|+.++.+ .++.++..|+++
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 86432 234689999999999999999999999999999 7778889999999999999999975 347899999999
Q ss_pred HHHHHcCChh---hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507 485 VGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD 561 (684)
Q Consensus 485 L~nl~~~~~~---~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~ 561 (684)
|+|++.+++. ....+.+.|++|.|+.+|.++.++.+++.|+|+|+|++.++. ..+.+.+.|++|.|++++.+++++
T Consensus 334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~ 412 (529)
T 1jdh_A 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQD 412 (529)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHH
Confidence 9999886543 356788999999999999988346999999999999998654 447888999999999999988899
Q ss_pred HHHHHHHHHHH--hhcCC------------------CHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 562 IKEEAAWAISN--ASSRG------------------THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 562 v~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
++++|+|+++| +..++ .++.+..+.+.|+++.|+.++.+++++++..+.+++.++...
T Consensus 413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-- 490 (529)
T 1jdh_A 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-- 490 (529)
T ss_dssp HC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--
Confidence 99988888877 32222 345556788999999999999999999999999999987632
Q ss_pred ccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507 622 AEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY 671 (684)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~ 671 (684)
+.++..+.+.|+++.|+.|++|+|++|+++|..++.+.
T Consensus 491 ------------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 ------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp ------------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 12678899999999999999999999999999999864
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=335.62 Aligned_cols=406 Identities=18% Similarity=0.181 Sum_probs=348.6
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
.+.++.+++.|+++++.++..|+++|.++++..+.....+++.|++|.|+++|++++ +.++..++.+|.+++.++++.+
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 378999999999999999999999999999887777888889999999999999987 8899989999999998889999
Q ss_pred HHHHhcCChHHHHHhcCCC-ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507 328 KVVIEHDAVPIFVKLLASP-SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR 406 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~-~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~ 406 (684)
..+.+.|+++.|+.++.+. ...++..++.+|.|++.. +..+..+.+.|+++.|+.++ ...+..+++.++|+|.++++
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999885 467889999999999965 45688899999999999999 55688999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC--CcccHhHHHHH
Q 035507 407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP--SPSVLTPALWT 484 (684)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~ 484 (684)
..+.. ....+++|.|+.++.+++++++..++++|++++ ..++...+.+.+.|+++.|+.++.+. .+.++..|+++
T Consensus 254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~-~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 76332 344689999999999999999999999999999 87788899999999999999999863 36899999999
Q ss_pred HHHHHcCChh--h-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507 485 VGNIVMGDDF--Q-TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD 561 (684)
Q Consensus 485 L~nl~~~~~~--~-~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~ 561 (684)
|+|++...++ . ...+++.|+++.|+.+|.++.++.+++.|+|+|+|++.+... .+.+++.|++|.|++++...+.+
T Consensus 331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~ 409 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQD 409 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchh
Confidence 9999975442 2 334778999999999998873479999999999999987544 48888999999999999876555
Q ss_pred HHHH----------------------HHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 562 IKEE----------------------AAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 562 v~~~----------------------a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
+|++ |+.+|.+++. +...+..+.+.|++++|++++.+.+++++..+..+|.++...
T Consensus 410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp HTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 5554 4555555554 345556788999999999999999999999999999998743
Q ss_pred ccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHH------------------HHH--HHHHHHHhcCCCC
Q 035507 620 GEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEI------------------HEK--SVKILETYWCGRV 676 (684)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i------------------~~~--a~~ii~~~f~~e~ 676 (684)
..++..++++|+++.|..+++++|++| |.+ +.++++.||..+.
T Consensus 488 --------------~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~ 550 (644)
T 2z6h_A 488 --------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 550 (644)
T ss_dssp --------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred --------------HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence 125788999999999999999999999 555 6778888887764
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=7.7e-35 Score=323.92 Aligned_cols=371 Identities=25% Similarity=0.316 Sum_probs=332.6
Q ss_pred hhccHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507 247 KLEILPMMVAGVWSDD-NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 247 ~~~~l~~lv~~L~s~~-~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
..+.++.+++.|.+++ +.++..|+++|.++++..+.....+++.|++|.|+.+|.+++ +.++..|+|+|++++.+++.
T Consensus 115 ~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~ 193 (528)
T 4b8j_A 115 QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPK 193 (528)
T ss_dssp HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChh
Confidence 3478999999999887 999999999999999876678888999999999999999987 89999999999999998888
Q ss_pred hHHHHHhcCChHHHHHhc-CCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507 326 NTKVVIEHDAVPIFVKLL-ASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404 (684)
Q Consensus 326 ~~~~i~~~g~i~~Li~lL-~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL 404 (684)
.+..+.+.|+++.|+.+| .++++.++..|+|+|++++...+.. ......|+++.|+.++ .+.+..++..++|+|+++
T Consensus 194 ~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYL 271 (528)
T ss_dssp HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHH
Confidence 999999999999999999 5688999999999999999886553 4445688999999999 677899999999999999
Q ss_pred ccCCCCC-ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-CcccHhHHH
Q 035507 405 CRGKPRP-LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-SPSVLTPAL 482 (684)
Q Consensus 405 ~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al 482 (684)
+...+.. ......+++|.|+.++.++++.++..|+++|++++ .+++...+.+++.|+++.|+.+|.++ ++.++..|+
T Consensus 272 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~-~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~ 350 (528)
T 4b8j_A 272 SDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV-TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEAC 350 (528)
T ss_dssp TSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH-cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHH
Confidence 9875322 23334789999999999999999999999999999 88888899999999999999999998 899999999
Q ss_pred HHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507 483 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFD 561 (684)
Q Consensus 483 ~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~ 561 (684)
++|+|++.+++...+.+++.|++|.|+.+|.++ ++.++..|+|+|+|++.+ ++++...+++.|+++.|+.++...+++
T Consensus 351 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~ 429 (528)
T 4b8j_A 351 WTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIR 429 (528)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 999999998888889999999999999999998 999999999999999985 789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 562 IKEEAAWAISNASSRGTH----------DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 562 v~~~a~~aL~nl~~~~~~----------~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
++..|+++|.+++..+.. .....+.+.|+++.+..++.+.++++...+..++.+++...+.
T Consensus 430 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~ 500 (528)
T 4b8j_A 430 IVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED 500 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 999999999999874322 2566778899999999999999999999999999999876443
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-35 Score=334.23 Aligned_cols=404 Identities=15% Similarity=0.120 Sum_probs=332.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHc----CCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCc
Q 035507 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIES----GVVPRFVEFLMRE-DYPQLQFQAAWALTNIASGTS 324 (684)
Q Consensus 251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~----g~i~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~ 324 (684)
++.|+.++++++..++..|+.+|+++.+... .+....++. .+++.|+++|.++ .+++++..|+|+|.+++. ++
T Consensus 332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~ 410 (810)
T 3now_A 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DA 410 (810)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SH
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-Cc
Confidence 4888888888888889999999999875322 111111222 3477889999887 137999999999999998 55
Q ss_pred hhHHHHH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC-----------------------------c---hh
Q 035507 325 ENTKVVI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC-----------------------------R---DL 371 (684)
Q Consensus 325 ~~~~~i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~-----------------------------r---~~ 371 (684)
+.+..++ +.|++|.|+.+|+++++.++..|+|+|+||+.+.+.. + +.
T Consensus 411 ~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~ 490 (810)
T 3now_A 411 ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITV 490 (810)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHH
Confidence 5565555 6799999999999999999999999999999754211 1 56
Q ss_pred HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh
Q 035507 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN 451 (684)
Q Consensus 372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~ 451 (684)
+.+.|++++|+.++ .++++.++..|+|+|.|++.....+......|++|.|+.++.++++..+..|+|+|++++...++
T Consensus 491 VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 491 LANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP 569 (810)
T ss_dssp HHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh
Confidence 77889999999999 67889999999999999997645444555689999999999999999999999999999822233
Q ss_pred HHHH-HHHHhchHHHHHHhcCCCCc-ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507 452 DKIQ-AVIEAGVCGRLVELLGHPSP-SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS 529 (684)
Q Consensus 452 ~~~~-~~~~~g~l~~L~~lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 529 (684)
...- .....|++|.|+.+|.++.. ..+..|+++|+|++.+++...+.+++.|+++.|+.++.++ ++.+++.|+++|+
T Consensus 570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~ 648 (810)
T 3now_A 570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLC 648 (810)
T ss_dssp HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHH
T ss_pred hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 2210 01124689999999986533 3356899999999999888899999999999999999998 9999999999999
Q ss_pred HHhcCChHHHHHHHH-hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHH-CCChHHHHhhccCCChHHHH
Q 035507 530 NIACGNREQIQAVID-AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVT-EGCIKPLCDLLQCADPKIVT 607 (684)
Q Consensus 530 nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~g~l~~L~~lL~~~~~~v~~ 607 (684)
|++.++. ....+++ .|.++.|+.++...+..++++|+|+|+|++.+ ++.+.+.+++ .|++++|++++.+++.+++.
T Consensus 649 NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~ 726 (810)
T 3now_A 649 NLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQH 726 (810)
T ss_dssp HHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHH
T ss_pred HHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHH
Confidence 9998754 4555554 78999999999999999999999999999974 6778888888 89999999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhc-C--CCHHHHHHHHHHHHHhc
Q 035507 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQS-H--DNNEIHEKSVKILETYW 672 (684)
Q Consensus 608 ~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~-~--~~~~i~~~a~~ii~~~f 672 (684)
.+++++.++...+.. ....+.+.|+++.|.+|.. + .++++++.|.+.++...
T Consensus 727 ~A~~aL~NL~~~s~e-------------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 727 RGIVIILNMINAGEE-------------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHHHHHTTCHH-------------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHH-------------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 999999999974321 4688999999999999954 3 48999999999988764
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.6e-34 Score=321.45 Aligned_cols=372 Identities=26% Similarity=0.333 Sum_probs=332.4
Q ss_pred hhccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507 247 KLEILPMMVAGVWSD-DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 247 ~~~~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
..+.++.+++.|.++ ++.++..|+++|.++++..+.....+++.|++|.|+++|.+++ +.++..|+|+|.+++..++.
T Consensus 128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~ 206 (530)
T 1wa5_B 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTD 206 (530)
T ss_dssp HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCcc
Confidence 347899999999987 8999999999999998876667788889999999999999887 89999999999999998889
Q ss_pred hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 035507 326 NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLC 405 (684)
Q Consensus 326 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~ 405 (684)
.+..+...|+++.|+.++.++++.++..|+|+|++++.+...........++++.|+.++ .+.+..++..++|+|++++
T Consensus 207 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987633345566688999999999 6678899999999999999
Q ss_pred cCCCC-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHH
Q 035507 406 RGKPR-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT 484 (684)
Q Consensus 406 ~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 484 (684)
...+. .......+++|.|+.++.++++.++..++++|++++ .+++...+.+.+.|+++.|+.+|.++++.++..|+++
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~a 364 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT 364 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH-cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 87532 222233689999999999999999999999999999 8888888889999999999999999999999999999
Q ss_pred HHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-Ch--HHHHHHHHhCCHHHHHHHhccCCHh
Q 035507 485 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NR--EQIQAVIDAGLIGPLVNLLQNAEFD 561 (684)
Q Consensus 485 L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~g~l~~Li~ll~~~~~~ 561 (684)
|++++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ ++ ++...+++.|++|.|+.++...+++
T Consensus 365 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 443 (530)
T 1wa5_B 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 443 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 9999998888888899999999999999988 999999999999999874 55 7888999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 562 IKEEAAWAISNASSRGTH----------DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 562 v~~~a~~aL~nl~~~~~~----------~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
++..|+++|.+++..+.. ..+..+.+.|+++.|..++.+++++++..+..+|.+++...+.
T Consensus 444 v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~ 514 (530)
T 1wa5_B 444 IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 514 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence 999999999999874322 2456788999999999999999999999999999999976543
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=6.7e-35 Score=317.63 Aligned_cols=368 Identities=24% Similarity=0.322 Sum_probs=328.1
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 249 EILPMMVAGVWSD-DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 249 ~~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
+.++.+++.++++ ++.++..|+++|.+++...++....+++.|++|.|+++|++++ +.+|..|+++|++++.++++.+
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~~ 142 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMCR 142 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHHH
Confidence 6899999999998 8999999999999999876667777889999999999999987 9999999999999999888899
Q ss_pred HHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 035507 328 KVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLC 405 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~ 405 (684)
..+++.|+++.|+.++.+ ++..++..|+|+|++++.+. +..+..+ ..++++.|+..+ .+.+..++..++|+|++++
T Consensus 143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYLS 220 (450)
T ss_dssp HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHH
Confidence 999999999999999996 78999999999999999765 4433333 378899999999 5678899999999999999
Q ss_pred cCCC-CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHH
Q 035507 406 RGKP-RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT 484 (684)
Q Consensus 406 ~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 484 (684)
...+ ........+++|.++.++.++++.++..++++|++++ .+.+...+.+.+.|+++.|+.++.++++.++..|+++
T Consensus 221 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 221 DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV-TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp SSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHh-hCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 8752 2223334789999999999999999999999999999 8888888888999999999999999999999999999
Q ss_pred HHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHhHH
Q 035507 485 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFDIK 563 (684)
Q Consensus 485 L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~v~ 563 (684)
|++++.+++...+.+++.|++|.|+.++.++ ++.+|..|+|+|+|++.+ +++.++.+++.|++|.|++++..++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999999988888899999999999999998 999999999999999975 77888889999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 564 EEAAWAISNASSRGTH----------DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 564 ~~a~~aL~nl~~~~~~----------~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
..|+++|.+++..+.. .....+.+.|+++.|..++.+++++++..++.++.+++...+
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999999874322 235677888999999999999999999999999999996543
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=7.6e-35 Score=317.50 Aligned_cols=364 Identities=19% Similarity=0.194 Sum_probs=304.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-CchhH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASG-TSENT 327 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~-~~~~~ 327 (684)
+.++.++++|.++++++|..|+++|++++..+.+++..+++.|+||.|+++|++++ +++|..|+|+|.||+.+ +++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHH
Confidence 57899999999999999999999999998877788999999999999999999988 99999999999999985 68999
Q ss_pred HHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc-----------------cCC
Q 035507 328 KVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN-----------------EHT 389 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~-----------------~~~ 389 (684)
..+++.|+||.|+.+|.+ ++..++++|+++|+||+... ..+..+.. +++++|+.++. ...
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHh-ccHHHHHHHHhcccccccccccccccccccc
Confidence 999999999999999997 67899999999999999854 45777775 57999999762 123
Q ss_pred chHHHHHHHHHHHHhccCCCC-CChh-hhhchHHHHHHHhcC------CcHHHHHHHHHHHHhhccCCCh----------
Q 035507 390 ELSMLRIATTTLSNLCRGKPR-PLFD-QVRPALPALAQLIHS------NDEQVLTDACWALFGLSGDRNN---------- 451 (684)
Q Consensus 390 ~~~v~~~a~~~L~nL~~~~~~-~~~~-~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~L~~~~~~---------- 451 (684)
+..++.+|+++|.||+...+. +... ...++++.|+.++.+ .+...+++|+++|.||+ ....
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs-~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS-YQVHREIPQAERYQ 283 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH-TTHHHHSTTCCC--
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh-ccccccccchhhhh
Confidence 679999999999999987633 2222 236778899999874 56789999999999999 4311
Q ss_pred ---------------HHHHHHHHhchHHHHHHhcC-CCCcccHhHHHHHHHHHHcCChh---hHH-HHHhcCChHHHHHH
Q 035507 452 ---------------DKIQAVIEAGVCGRLVELLG-HPSPSVLTPALWTVGNIVMGDDF---QTQ-CIINHGAVPCLLAL 511 (684)
Q Consensus 452 ---------------~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~---~~~-~~i~~g~l~~L~~l 511 (684)
...+.+.+.++++.++.+|. +.++.+++.|+++|.|++.+... ..+ .+.+.+++|.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 01122234466788899995 46789999999999999987632 223 33456889999999
Q ss_pred hccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--------CHhHHHHHHHHHHHhhcCCCHHHHH
Q 035507 512 LIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--------EFDIKEEAAWAISNASSRGTHDQIK 583 (684)
Q Consensus 512 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~ 583 (684)
|.++ +..+++.|+|+|+|++.+.. .+.++..|++|.|+++|..+ +.+++..|+++|.|++. +++++.+
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a-~~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA-ENLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc-CCHHHHH
Confidence 9999 99999999999999998653 23456889999999999876 46788999999999987 4789999
Q ss_pred HHHHCCChHHHHhhccCC--ChHHHHHHHHHHHHHHhcc
Q 035507 584 YLVTEGCIKPLCDLLQCA--DPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 584 ~l~~~g~l~~L~~lL~~~--~~~v~~~al~~L~~il~~~ 620 (684)
.+.+.|+++.|++++.+. .+.+...|.++|.++..+.
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 999999999999999986 8899999999999998643
No 18
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.1e-32 Score=316.03 Aligned_cols=402 Identities=18% Similarity=0.179 Sum_probs=343.0
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
.+.++.+++.|+++++.++..|+++|.+++.........+.+.|+++.|+++|.+++ ..++..|+.+|.+++.++++.+
T Consensus 233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 478999999999999999999999999999887677778889999999999999877 8999999999999998889999
Q ss_pred HHHHhcCChHHHHHhcCCCC-hHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507 328 KVVIEHDAVPIFVKLLASPS-DDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR 406 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~ 406 (684)
..+.+.|+++.|+.++.+++ ...++.++.+|.+++... ..+..+...|+++.|+.++ .+.+..+++.++|+|.+++.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999998854 456778999999999754 4578888999999999999 55678899999999999998
Q ss_pred CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-C-cccHhHHHHH
Q 035507 407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-S-PSVLTPALWT 484 (684)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-~-~~v~~~al~~ 484 (684)
..+. .....+++|.|+.++.+.++.++..|+++|++++ ..++...+.+.+.|+++.|+.+|.+. + +.++..|+++
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~a 466 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 466 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHH
Confidence 8633 2234689999999999999999999999999999 88888899999999999999999763 3 3899999999
Q ss_pred HHHHHcCChh---hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507 485 VGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD 561 (684)
Q Consensus 485 L~nl~~~~~~---~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~ 561 (684)
|+|++..+++ ....+.+.|+++.|+.+|.++.++.++++|+|+|+|++.+. .....+.+.|++|.|++++.+++.+
T Consensus 467 L~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~ 545 (780)
T 2z6g_A 467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQD 545 (780)
T ss_dssp HHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchh
Confidence 9999876543 23467889999999999998834599999999999999865 4457888999999999999775544
Q ss_pred ----------------------HHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 562 ----------------------IKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 562 ----------------------v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
++..|+.+|.+++. +++.+..+.+.|++++|+.++.+.++.++..+..+|.++...
T Consensus 546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 45556666677764 466667788999999999999999999999999999998632
Q ss_pred ccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507 620 GEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f 672 (684)
..+...+.+.|+++.|..|+++++++|++.|...+.+..
T Consensus 624 --------------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 624 --------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp --------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 126788999999999999999999999666555544443
No 19
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=8.5e-34 Score=302.97 Aligned_cols=328 Identities=17% Similarity=0.178 Sum_probs=280.3
Q ss_pred hhhccHHHHHHHhcCC------------CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCH----------HHHHHhhcCC
Q 035507 246 TKLEILPMMVAGVWSD------------DNNLQLEATTQFQKLLSIESMPIEEVIESGVV----------PRFVEFLMRE 303 (684)
Q Consensus 246 ~~~~~l~~lv~~L~s~------------~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i----------~~Lv~lL~~~ 303 (684)
.+.|.+|.++++|+.. ++++++.|+|+|.++++..++..+...+.|++ +.+++++.+.
T Consensus 67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 4578999999999963 37999999999999999998888888888888 7778888764
Q ss_pred C-CHH-----HHH-------HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-----------CChHHHHHHHHHHH
Q 035507 304 D-YPQ-----LQF-------QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-----------PSDDVREQAVWALG 359 (684)
Q Consensus 304 ~-~~~-----v~~-------~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-----------~~~~v~~~a~~~L~ 359 (684)
. ..+ ++. +|+|+|.|++. ++++|..+++.|+++.|+.+|.. .++.+++.|+|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 2 112 444 99999999977 69999999999999999999942 34679999999999
Q ss_pred HhhCCCCCCchhHh-hcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHh-cCCcHHHH
Q 035507 360 NVAADSSGCRDLVL-SEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLI-HSNDEQVL 435 (684)
Q Consensus 360 nLa~~~~~~r~~i~-~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL-~~~d~~v~ 435 (684)
||+.+.+..+..+. ..|++++|+.+| .+.+.+++..|+|+|+||+... ..+......|++|.|+++| .+.++.++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 99988765566664 456699999999 5788999999999999999852 2223334479999999975 56789999
Q ss_pred HHHHHHHHhhccCCChHHHHHHH-HhchHHHHHHhcCCCCcc----cHhHHHHHHHHHHc---CChhhHHHHHhcCChHH
Q 035507 436 TDACWALFGLSGDRNNDKIQAVI-EAGVCGRLVELLGHPSPS----VLTPALWTVGNIVM---GDDFQTQCIINHGAVPC 507 (684)
Q Consensus 436 ~~al~~L~~L~~~~~~~~~~~~~-~~g~l~~L~~lL~~~~~~----v~~~al~~L~nl~~---~~~~~~~~~i~~g~l~~ 507 (684)
..++.+|++|+ ...++....+. ..|+++.|+.+|.+.++. ++..|+++|.|++. +++++++.+++.|++|.
T Consensus 305 ~~A~~aL~nLs-~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~ 383 (458)
T 3nmz_A 305 KSVLSALWNLS-AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 383 (458)
T ss_dssp HHHHHHHHHHH-HHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHc-cCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHH
Confidence 99999999999 53555555555 789999999999887653 89999999999997 78889999999999999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC
Q 035507 508 LLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG 577 (684)
Q Consensus 508 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~ 577 (684)
|+.+|.++ +..++++|+|+|+|++.+++++++.+++.|++|.|++++..++..+++.|+|+|.|++...
T Consensus 384 Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 384 LLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999998 9999999999999999888999999999999999999999999999999999999999853
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=4.2e-33 Score=303.80 Aligned_cols=370 Identities=18% Similarity=0.225 Sum_probs=306.6
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCC-CC
Q 035507 288 IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD-SS 366 (684)
Q Consensus 288 i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~-~~ 366 (684)
...+.+|.|+++|.+++ +++|..|+++|.+++.++++++..+++.|+||.|+.+|.+++..++++|+|+|.||+.. ++
T Consensus 45 ~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred cccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 35678999999999988 89999999999999998999999999999999999999999999999999999999985 56
Q ss_pred CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc------------------
Q 035507 367 GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH------------------ 428 (684)
Q Consensus 367 ~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~------------------ 428 (684)
..+..+.+.|++++|+.+|....+.++++.++++|++|+... ........+++|.|++++.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 779999999999999999976678899999999999999864 3333444678999999872
Q ss_pred CCcHHHHHHHHHHHHhhccCCChHHHHHHHHh-chHHHHHHhcCC------CCcccHhHHHHHHHHHHcCChh-------
Q 035507 429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEA-GVCGRLVELLGH------PSPSVLTPALWTVGNIVMGDDF------- 494 (684)
Q Consensus 429 ~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~~------- 494 (684)
..++.++..|.++|.|++ ..+++..+.+.+. |+++.|+.++.+ .+...++.|+++|.||+.....
T Consensus 203 ~~d~~V~~nAa~~L~NLs-~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVS-SERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCHHHHHHHHHHHHHHT-SSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred cccHHHHHHHHHHHHHHh-cCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 236899999999999999 7676767778875 677899999864 4667889999999999865211
Q ss_pred ------------------hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCCh---HHHH-HHHHhCCHHHHH
Q 035507 495 ------------------QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR---EQIQ-AVIDAGLIGPLV 552 (684)
Q Consensus 495 ------------------~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~-~l~~~g~l~~Li 552 (684)
..+.+.+.++++.|+.+|.+..++.+++.|+|+|.|++++.. ..++ .+.+.+++|.|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 111222335577889999654489999999999999998652 2233 334578899999
Q ss_pred HHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--------ChHHHHHHHHHHHHHHhcccccc
Q 035507 553 NLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA--------DPKIVTVCLEGLENILKVGEAEK 624 (684)
Q Consensus 553 ~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~--------~~~v~~~al~~L~~il~~~~~~~ 624 (684)
++|..++.++++.|+|+|.|++.+... . ..+..|+++.|+++|.+. ..+++..++.+|.+++.....
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~~~--~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-- 436 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDARN--K-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-- 436 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCSC--H-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChhH--H-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH--
Confidence 999999999999999999999985432 2 344778999999999876 367889999999999865433
Q ss_pred cCCCCCcchhHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHHhcCCCC
Q 035507 625 NTDSDIGDINQFAQLVEEAEGLEKIENLQSHD--NNEIHEKSVKILETYWCGRV 676 (684)
Q Consensus 625 ~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~--~~~i~~~a~~ii~~~f~~e~ 676 (684)
....+.+.|++..|..|..+. .+.+.+.|..++..+|.+.+
T Consensus 437 -----------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 437 -----------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp -----------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred -----------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 356788999999999998765 89999999999999987654
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=5.4e-32 Score=301.07 Aligned_cols=403 Identities=16% Similarity=0.156 Sum_probs=338.3
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 249 EILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 249 ~~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
+.++.+++.|.+ ++++++..|+.+|+++... +.+...+++.|++|.|+++|++++ +.++..|+++|.+++.+++..+
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchH
Confidence 578999999975 4899999999999997654 457888999999999999999988 8999999999999999777888
Q ss_pred HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
..+.+.|+++.|+.++.++++.++..++.+|.+++..++..+..+.+.|+++.++.++....+......++.+|.+++..
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999887777888889999999999997777777888899999999976
Q ss_pred CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507 408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487 (684)
Q Consensus 408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 487 (684)
..........++++.++.++.+++++++..++|++.+++ ....... ...|+++.|++++.++++.++..|+++|++
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH-TTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh-cCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 543344445789999999999999999999999999999 5543221 123789999999999999999999999999
Q ss_pred HHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChH---HHHHHHHhCCHHHHHHHhccCC-HhH
Q 035507 488 IVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNRE---QIQAVIDAGLIGPLVNLLQNAE-FDI 562 (684)
Q Consensus 488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~g~l~~Li~ll~~~~-~~v 562 (684)
++.+++...+.+.+.|+++.|+.++.+. .++.++..|+++|+|++.++++ ....+.+.|++|.|++++.+++ ..+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 9998888899999999999999999764 1478999999999999886433 3567889999999999999876 699
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHH----------------------HHhcc
Q 035507 563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLEN----------------------ILKVG 620 (684)
Q Consensus 563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~----------------------il~~~ 620 (684)
++.|+|+++|++.+ ++....+.+.|+++.|++++.+.+++++..+.+++.+ +...
T Consensus 373 ~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~- 449 (529)
T 1jdh_A 373 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD- 449 (529)
T ss_dssp HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC-
Confidence 99999999999974 3445778899999999999988777777766655554 3221
Q ss_pred cccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 035507 621 EAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWC 673 (684)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~ 673 (684)
......+.+.|+++.|..+..++++++...|...+.++-.
T Consensus 450 -------------~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 450 -------------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp -------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred -------------chHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 1134568889999999999999999999999998887653
No 22
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.98 E-value=8.8e-31 Score=297.83 Aligned_cols=404 Identities=17% Similarity=0.168 Sum_probs=342.5
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 249 EILPMMVAGVWSD-DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 249 ~~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
+.++.+++.|.++ +++++..|+.+|+++... ..++..+++.|+++.|+++|++++ +.++..|+++|.+++..++..+
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhH
Confidence 5789999999865 899999999999986654 457888899999999999999987 8999999999999999777888
Q ss_pred HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
..+.+.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++.......++..++.+|.+++..
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999877677888899999999999997776778889999999999986
Q ss_pred CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507 408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487 (684)
Q Consensus 408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 487 (684)
..........++++.++.++.+.+..++..++|+|.+++ ...... ....++++.|+.++.+.++.++..|+++|++
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~-~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHG-GGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh-hcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 544444555789999999999999999999999999999 543221 1123789999999999999999999999999
Q ss_pred HHcCChhhHHHHHhcCChHHHHHHhccCCC-hhHHHHHHHHHHHHhcCCh--HHH-HHHHHhCCHHHHHHHhccCC-HhH
Q 035507 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHK-NSIKKEVSWIISNIACGNR--EQI-QAVIDAGLIGPLVNLLQNAE-FDI 562 (684)
Q Consensus 488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~--~~~-~~l~~~g~l~~Li~ll~~~~-~~v 562 (684)
++.+++..++.+.+.|+++.|+.++.+..+ +.++..|+++|+|++...+ +.. ..+++.|++|.|+++|.+.+ ..+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 999888888999999999999999987423 7999999999999987533 233 34778899999999999874 799
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC----------------------hHHHHHHHHHHHHHHhcc
Q 035507 563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD----------------------PKIVTVCLEGLENILKVG 620 (684)
Q Consensus 563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~----------------------~~v~~~al~~L~~il~~~ 620 (684)
++.|+|+|+|++.+ ++....+.+.|+++.|++++.+.+ .+++..++.+|.++....
T Consensus 370 ~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~ 447 (644)
T 2z6h_A 370 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447 (644)
T ss_dssp HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999974 334477889999999999998643 345666777777766532
Q ss_pred cccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 035507 621 EAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCG 674 (684)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~ 674 (684)
. ....+.+.|+++.|..+..+.++++...|...+.++..+
T Consensus 448 ~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 448 H--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp H--------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred H--------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 1 346788899999999999999999999999988877543
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=2e-30 Score=299.57 Aligned_cols=402 Identities=17% Similarity=0.176 Sum_probs=340.3
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 249 EILPMMVAGVWSD-DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 249 ~~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
+.++.+++.|.++ +++++..|+.+|+++... ..+...+.+.|+++.|+++|++++ +.++..|+++|.+++..++..+
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhH
Confidence 5789999999854 899999999999996554 456788889999999999999987 8999999999999999778889
Q ss_pred HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
..+.+.|+++.|+.+|.+++..+++.++.+|.+++..++..+..+...|+++.|+.++...........++.+|.+++..
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999877777888888899999999997666667778899999999976
Q ss_pred CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507 408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487 (684)
Q Consensus 408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 487 (684)
..........++++.|+.++.+.++.++..++++|.+++ ...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~-~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHH-TTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHh-ccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 543344445789999999999999999999999999999 544321 1224789999999999999999999999999
Q ss_pred HHcCChhhHHHHHhcCChHHHHHHhccCCC-hhHHHHHHHHHHHHhcCChH---HHHHHHHhCCHHHHHHHhccCC-HhH
Q 035507 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHK-NSIKKEVSWIISNIACGNRE---QIQAVIDAGLIGPLVNLLQNAE-FDI 562 (684)
Q Consensus 488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~g~l~~Li~ll~~~~-~~v 562 (684)
++.+++...+.+++.|+++.|+.+|.+..+ ..++..|+++|+||+...++ ....+.+.|++|.|++++...+ ..+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999988888999999999999999976423 48999999999999875433 2346778999999999999876 499
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC----------------------hHHHHHHHHHHHHHHhcc
Q 035507 563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD----------------------PKIVTVCLEGLENILKVG 620 (684)
Q Consensus 563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~----------------------~~v~~~al~~L~~il~~~ 620 (684)
++.|+|+|+|++. .++....+.+.|+++.|++++.+.+ .+++..++.+|.++....
T Consensus 506 ~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~ 583 (780)
T 2z6g_A 506 IKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583 (780)
T ss_dssp HHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence 9999999999997 4555678889999999999997644 345666777777765321
Q ss_pred cccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507 621 EAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f 672 (684)
.....+.+.|+++.|..+..+++++|...|...+..+.
T Consensus 584 --------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 584 --------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp --------------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred --------------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 13466888999999999999999999999998887664
No 24
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=2.4e-30 Score=280.93 Aligned_cols=323 Identities=17% Similarity=0.182 Sum_probs=271.7
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcCCch
Q 035507 247 KLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLM-REDYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 247 ~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~-~~~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
..|.+|.++++|+++++++|..|+++|++++..+++++..+++.|++|.|+++|. +++ +++++.|+|+|.|++.+ ++
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa~~-~~ 119 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSST-DE 119 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTS-SS
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCC-HHHHHHHHHHHHHHhcC-HH
Confidence 4589999999999999999999999999999876688888999999999999999 666 89999999999999996 78
Q ss_pred hHHHHHhcCChHHHHHhc--------CCC--------ChHHHHHHHHHHHHhhCCCCCCchhHhhc-CCHHHHHHHhccC
Q 035507 326 NTKVVIEHDAVPIFVKLL--------ASP--------SDDVREQAVWALGNVAADSSGCRDLVLSE-GALIPLLAQLNEH 388 (684)
Q Consensus 326 ~~~~i~~~g~i~~Li~lL--------~~~--------~~~v~~~a~~~L~nLa~~~~~~r~~i~~~-g~l~~Ll~~L~~~ 388 (684)
.+..+++ |++|.|+.+| .++ ++.+++.|+|+|+||+.+ +..++.+.+. |++++|+.++...
T Consensus 120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~ 197 (457)
T 1xm9_A 120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNC 197 (457)
T ss_dssp THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhh
Confidence 8998999 9999999999 332 456777999999999988 6678888887 9999999999642
Q ss_pred -----CchHHHHHHHHHHHHhccCC--------------------------------------------------C-CCC
Q 035507 389 -----TELSMLRIATTTLSNLCRGK--------------------------------------------------P-RPL 412 (684)
Q Consensus 389 -----~~~~v~~~a~~~L~nL~~~~--------------------------------------------------~-~~~ 412 (684)
.+..+..+++++|.|++... + ...
T Consensus 198 ~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (457)
T 1xm9_A 198 VAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG 277 (457)
T ss_dssp HHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGG
T ss_pred ccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHH
Confidence 45567889999999987310 0 001
Q ss_pred hhhhhchHHHHHHHhcC-CcHHHHHHHHHHHHhhccCCChHH---H-HHHH-HhchHHHHHHhcCCCCcccHhHHHHHHH
Q 035507 413 FDQVRPALPALAQLIHS-NDEQVLTDACWALFGLSGDRNNDK---I-QAVI-EAGVCGRLVELLGHPSPSVLTPALWTVG 486 (684)
Q Consensus 413 ~~~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~---~-~~~~-~~g~l~~L~~lL~~~~~~v~~~al~~L~ 486 (684)
.....++++.++.+|.+ .++.+++.|+|+|++++ .++... . +.++ +.|++|.|+++|.+++..++..|+++|+
T Consensus 278 ~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~-~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~ 356 (457)
T 1xm9_A 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT-ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356 (457)
T ss_dssp GGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhc-cCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHH
Confidence 11236778888988875 46999999999999999 655332 2 3344 5799999999999999999999999999
Q ss_pred HHHcCChhhHHHHHhcCChHHHHHHhccCC-----ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CH
Q 035507 487 NIVMGDDFQTQCIINHGAVPCLLALLIHNH-----KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EF 560 (684)
Q Consensus 487 nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~ 560 (684)
|++.+. ..+.++..|++|.|+.+|.++. +.++...++++|+|+..+++++.+.+.+.|+++.|++++.++ +.
T Consensus 357 nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~ 434 (457)
T 1xm9_A 357 NMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP 434 (457)
T ss_dssp HHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH
T ss_pred HHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH
Confidence 998753 4556677799999999998762 136888999999999998889999999999999999999999 99
Q ss_pred hHHHHHHHHHHHhhcC
Q 035507 561 DIKEEAAWAISNASSR 576 (684)
Q Consensus 561 ~v~~~a~~aL~nl~~~ 576 (684)
++++.|+|+|.|+...
T Consensus 435 ~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 435 KAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHcc
Confidence 9999999999999863
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=4.5e-29 Score=259.00 Aligned_cols=269 Identities=19% Similarity=0.182 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-----------CChHHHHHHHHHHHHhhCCCCCCchhHh-
Q 035507 306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-----------PSDDVREQAVWALGNVAADSSGCRDLVL- 373 (684)
Q Consensus 306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-----------~~~~v~~~a~~~L~nLa~~~~~~r~~i~- 373 (684)
...+.+|+|+|.|++. ++++|..+++.|+++.|+.+|.. .++.+++.|+|+|.||+.+++..+..+.
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3555689999999998 58999999999999999999952 2477999999999999987765566664
Q ss_pred hcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHh-cCCcHHHHHHHHHHHHhhccCCC
Q 035507 374 SEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLI-HSNDEQVLTDACWALFGLSGDRN 450 (684)
Q Consensus 374 ~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~al~~L~~L~~~~~ 450 (684)
..|++++|+.+| .+.+.+++..|+|+|.||+... ..+......|++|.|+++| .+.+++++..++++|++++ ...
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs-~~~ 202 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS-AHC 202 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-TTC
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH-ccC
Confidence 456699999999 6788999999999999999862 2233344579999999975 6678999999999999999 646
Q ss_pred hHHHHHHH-HhchHHHHHHhcCCCCc----ccHhHHHHHHHHHHc---CChhhHHHHHhcCChHHHHHHhccCCChhHHH
Q 035507 451 NDKIQAVI-EAGVCGRLVELLGHPSP----SVLTPALWTVGNIVM---GDDFQTQCIINHGAVPCLLALLIHNHKNSIKK 522 (684)
Q Consensus 451 ~~~~~~~~-~~g~l~~L~~lL~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~ 522 (684)
++....+. ..|+++.|+.+|.++++ .++..|+++|.|++. +++++++.+.+.|++|.|+.+|.++ +..+++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~ 281 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVS 281 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHH
Confidence 56555565 78999999999988665 389999999999997 6888899999999999999999998 999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC
Q 035507 523 EVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT 578 (684)
Q Consensus 523 ~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~ 578 (684)
+|+|+|+|++.+++++++.+++.|++|.|++++.+++..+++.|+|+|.|++.+..
T Consensus 282 ~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999998889999999999999999999999999999999999999998643
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=1.6e-28 Score=254.93 Aligned_cols=274 Identities=20% Similarity=0.205 Sum_probs=238.5
Q ss_pred CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc----------CCchHHHHHHHHHHHHhccCCCCCChhh
Q 035507 346 PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE----------HTELSMLRIATTTLSNLCRGKPRPLFDQ 415 (684)
Q Consensus 346 ~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~----------~~~~~v~~~a~~~L~nL~~~~~~~~~~~ 415 (684)
+......+|+|+|+|++.+ ++.|+.+.+.|++++|+.+|.. ..++.+++.|+|+|.|||.+........
T Consensus 44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4446667999999999998 4679999999999999999942 1346799999999999998863222222
Q ss_pred --hhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC-ChHHHHHHHHhchHHHHHHhc-CCCCcccHhHHHHHHHHHHcC
Q 035507 416 --VRPALPALAQLIHSNDEQVLTDACWALFGLSGDR-NNDKIQAVIEAGVCGRLVELL-GHPSPSVLTPALWTVGNIVMG 491 (684)
Q Consensus 416 --~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~-~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~ 491 (684)
..+++|.|+.+|.+++++++..++|+|.+++ .. +++....+.+.|++|.|+++| .+.++.++..|+.+|+|++.+
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs-~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLS-WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH-TTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHh-ccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 3567999999999999999999999999999 64 567888899999999999974 667888999999999999987
Q ss_pred ChhhHHHHH-hcCChHHHHHHhccCCCh----hHHHHHHHHHHHHhc---CChHHHHHHHHhCCHHHHHHHhccCCHhHH
Q 035507 492 DDFQTQCII-NHGAVPCLLALLIHNHKN----SIKKEVSWIISNIAC---GNREQIQAVIDAGLIGPLVNLLQNAEFDIK 563 (684)
Q Consensus 492 ~~~~~~~~i-~~g~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~ 563 (684)
+++....+. ..|++|.|+.+|.++ ++ .+++.|+|+|.|++. +++++++.+.+.|++|.|+.+|.+++.+++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 280 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 280 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHH
Confidence 766655666 789999999999876 43 599999999999997 788999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507 564 EEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 564 ~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~ 623 (684)
++|+|+|.|++. +++++...+.+.|++++|++++.+.+++++..+.++|.+++...+..
T Consensus 281 ~~A~~aL~nLa~-~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 281 SNACGTLWNLSA-RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHHHTS-SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999986 47889999999999999999999999999999999999999875543
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=1.3e-25 Score=223.92 Aligned_cols=240 Identities=27% Similarity=0.392 Sum_probs=222.0
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507 291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370 (684)
Q Consensus 291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~ 370 (684)
|.+|.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..++
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 57899999999988 99999999999999998888999999999999999999999999999999999999998788889
Q ss_pred hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC
Q 035507 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR 449 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~ 449 (684)
.+.+.|+++.++.++ .+.+..++..++|+|.+++... .........+++|.+++++.++++.++..++++|++++ ..
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~-~~ 158 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA-SG 158 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TS
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH-cC
Confidence 999999999999999 5678999999999999999754 33333444789999999999999999999999999999 77
Q ss_pred ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507 450 NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS 529 (684)
Q Consensus 450 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 529 (684)
++...+.+.+.|+++.|+.++.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++ ++.+++.|+|+|+
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALE 237 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 888888999999999999999999999999999999999998888899999999999999999998 9999999999999
Q ss_pred HHhcC
Q 035507 530 NIACG 534 (684)
Q Consensus 530 nl~~~ 534 (684)
|++..
T Consensus 238 ~l~~~ 242 (252)
T 4hxt_A 238 NIKSG 242 (252)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 99874
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.94 E-value=1.9e-25 Score=225.50 Aligned_cols=236 Identities=17% Similarity=0.154 Sum_probs=203.2
Q ss_pred cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHH-hcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHH
Q 035507 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVE-LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL 509 (684)
Q Consensus 431 d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~ 509 (684)
+.+-+..|+..|.+++ . +.++...+.+.|+++.|+. +|.++++.++..|+++|++++.+++..++.+++.|++|.|+
T Consensus 53 ~~e~k~~Al~~L~~lv-~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 53 DQQEREGALELLADLC-E-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHH-T-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-h-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 3467888999999999 4 5567777889999999999 99999999999999999999999998999999999999999
Q ss_pred HHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCC
Q 035507 510 ALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEG 589 (684)
Q Consensus 510 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g 589 (684)
.+|.++.+..+++.|+|+|+|++.+++...+.+.+.|++|.|+.++.+++..++..|+|+|++++.+ +++.+..+++.|
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g 209 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMG 209 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcC
Confidence 9998643789999999999999999989899999999999999999999999999999999999985 678889999999
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD-NNEIHEKSVKIL 668 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~-~~~i~~~a~~ii 668 (684)
++++|+.+|.+++++++..++.+|.+++........... ...+.+...+++ .++.++.|+ +.++|++|..|+
T Consensus 210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il 282 (296)
T 1xqr_A 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLL 282 (296)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987543211000 011336667765 378888776 799999999999
Q ss_pred HHhcCCCC
Q 035507 669 ETYWCGRV 676 (684)
Q Consensus 669 ~~~f~~e~ 676 (684)
++||.+++
T Consensus 283 ~~~f~~~~ 290 (296)
T 1xqr_A 283 QTCFSSPA 290 (296)
T ss_dssp HHHCC---
T ss_pred HHHcCCCC
Confidence 99997654
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=6.1e-25 Score=218.99 Aligned_cols=241 Identities=27% Similarity=0.402 Sum_probs=223.2
Q ss_pred CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCC
Q 035507 334 DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPL 412 (684)
Q Consensus 334 g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~ 412 (684)
|.++.|+.+|.++++.++..|+++|++++...+..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++... ....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 5689999999999999999999999999988877788889999999999999 5667999999999999999874 3334
Q ss_pred hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507 413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD 492 (684)
Q Consensus 413 ~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 492 (684)
.....++++.++.++.+++++++..++++|++++ ..+++....+.+.|+++.|++++.++++.++..|+++|++++.+.
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA-SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 4445789999999999999999999999999999 888889999999999999999999999999999999999999988
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHH
Q 035507 493 DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN 572 (684)
Q Consensus 493 ~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~n 572 (684)
+...+.+++.|+++.|+.++.++ ++.++..|+++|+|++.+++...+.+.+.|+++.|++++.+++++++..|+++|.|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 88888999999999999999988 99999999999999999888999999999999999999999999999999999999
Q ss_pred hhcCC
Q 035507 573 ASSRG 577 (684)
Q Consensus 573 l~~~~ 577 (684)
+....
T Consensus 239 l~~~~ 243 (252)
T 4hxt_A 239 IKSGG 243 (252)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 98744
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=1.3e-25 Score=224.15 Aligned_cols=239 Identities=34% Similarity=0.510 Sum_probs=219.7
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507 291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370 (684)
Q Consensus 291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~ 370 (684)
...+.++.+|.+++ +++|..|+++|.++.+.+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45789999999988 89999999999887776788888999999999999999999999999999999999988777889
Q ss_pred hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC-ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC
Q 035507 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP-LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR 449 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~ 449 (684)
.+.+.|+++.|+.++ .+++..++..++|+|++++...+.. ......+++|.+++++.++++.++..++++|++++ ..
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~ 168 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SG 168 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT-TS
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH-cC
Confidence 999999999999999 5578999999999999999886444 44555889999999999999999999999999999 87
Q ss_pred ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507 450 NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS 529 (684)
Q Consensus 450 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 529 (684)
++...+.+.+.|+++.|+.++.++++.++..|+++|++++.+++...+.+++.|+++.|+.++.++ ++.+++.|+|+|+
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~ 247 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALE 247 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 888888899999999999999999999999999999999998988899999999999999999998 9999999999999
Q ss_pred HHhc
Q 035507 530 NIAC 533 (684)
Q Consensus 530 nl~~ 533 (684)
|++.
T Consensus 248 ~l~~ 251 (252)
T 4db8_A 248 KLQS 251 (252)
T ss_dssp TTC-
T ss_pred HHhc
Confidence 9974
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=1.6e-25 Score=223.55 Aligned_cols=238 Identities=35% Similarity=0.508 Sum_probs=217.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.++.+++.|+++|++++..|+++|+++++...+++..+++.|++|.|+++|++++ +.++..|+++|.+++.++++.+..
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5789999999999999999999999988876678888999999999999999988 999999999999999989999999
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
+++.|+++.|+.+|.++++.+++.|+++|+|++.+.+.....+.+.|+++.|+.++ .+.+..++..++|+|++++...+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCh
Confidence 99999999999999999999999999999999988765337788999999999999 66788999999999999998752
Q ss_pred C-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 410 R-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 410 ~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
. .......+++|.|+.++.++++.++..++++|++++ ..++...+.+.+.|+++.|+.++.++++.++..|+++|+|+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 2 223334899999999999999999999999999999 88888999999999999999999999999999999999998
Q ss_pred Hc
Q 035507 489 VM 490 (684)
Q Consensus 489 ~~ 490 (684)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-22 Score=224.28 Aligned_cols=363 Identities=13% Similarity=0.093 Sum_probs=283.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.++.|...+++ ..++..|+..|+++.+........+. ...+.+.++|.+++ .+.+..|++.|..++. +++.+..
T Consensus 297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe~ 370 (778)
T 3opb_A 297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKIM 370 (778)
T ss_dssp HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHHH
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHHH
Confidence 45777777765 47888999999998776542211111 26688889998876 5669999999999998 7777777
Q ss_pred HHhc-CChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCC--------------------------------------Cc
Q 035507 330 VIEH-DAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSG--------------------------------------CR 369 (684)
Q Consensus 330 i~~~-g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~--------------------------------------~r 369 (684)
+.+. |+++.|+.++.+ .+..+...++.+|.|++.+.+. .+
T Consensus 371 L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~ 450 (778)
T 3opb_A 371 IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE 450 (778)
T ss_dssp HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence 7754 679999999995 7788999999999999975432 23
Q ss_pred hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHH---HHHHHHHHHHhhc
Q 035507 370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQ---VLTDACWALFGLS 446 (684)
Q Consensus 370 ~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~al~~L~~L~ 446 (684)
..+.+.|++++|+.++ .+.++.++..++|+|.+++.....+......|+++.|++++.+.... .+..|+++|++++
T Consensus 451 ~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl 529 (778)
T 3opb_A 451 KYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529 (778)
T ss_dssp HHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 4567889999999988 66788999999999999998766566666689999999999877544 8999999999998
Q ss_pred cCCChHHHH-HHHHhchHHHHHHhcCC-CCcc-------------cHhHHHHHHHHHHcCCh----hhHHHHHhc-CChH
Q 035507 447 GDRNNDKIQ-AVIEAGVCGRLVELLGH-PSPS-------------VLTPALWTVGNIVMGDD----FQTQCIINH-GAVP 506 (684)
Q Consensus 447 ~~~~~~~~~-~~~~~g~l~~L~~lL~~-~~~~-------------v~~~al~~L~nl~~~~~----~~~~~~i~~-g~l~ 506 (684)
...++...- .....|+++.|+.+|.. +... -+..|+.+|.|++..++ +.++.++.. |+++
T Consensus 530 is~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~ 609 (778)
T 3opb_A 530 IFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWS 609 (778)
T ss_dssp HTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHH
T ss_pred hcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHH
Confidence 223332210 00013899999999983 2211 16799999999999873 346778885 9999
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHhcCChHHH-HHHHH------hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCH
Q 035507 507 CLLALLIHNHKNSIKKEVSWIISNIACGNREQI-QAVID------AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTH 579 (684)
Q Consensus 507 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~------~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~ 579 (684)
.|..+|.++ +..+|++|+++++|++... +.+ +.+.+ .+-++.|+.++..++.++|+.|+|||.|++.+ .+
T Consensus 610 ~L~~LL~s~-n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-~~ 686 (778)
T 3opb_A 610 TIENLMLDE-NVPLQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-IP 686 (778)
T ss_dssp HHHHGGGCS-SHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-CH
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-Ch
Confidence 999999988 9999999999999999743 443 33432 12488999999999999999999999999752 56
Q ss_pred HHHHHHHHC-CChHHHHhhccC--CChHHHHHHHHHHHHHHhcccc
Q 035507 580 DQIKYLVTE-GCIKPLCDLLQC--ADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 580 ~~~~~l~~~-g~l~~L~~lL~~--~~~~v~~~al~~L~~il~~~~~ 622 (684)
..++.+++. ++++.+++++.. ++++++..++.++.+++.+...
T Consensus 687 ~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~ 732 (778)
T 3opb_A 687 LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPD 732 (778)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhcc
Confidence 677788776 799999999998 8999999999999999986543
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.5e-23 Score=227.46 Aligned_cols=322 Identities=12% Similarity=0.155 Sum_probs=258.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHH-cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch---
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIE-SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE--- 325 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~-~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~--- 325 (684)
..+.+++.+.+++.+.+..|+..|..+ +..+..++.+++ .|+++.|++++++..+..+...++.+|.|++...+.
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYL-SLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHH-TTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHH-hCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence 568888888888877799999999885 444445555554 467999999999633378999999999999984321
Q ss_pred -----------------------------------hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507 326 -----------------------------------NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370 (684)
Q Consensus 326 -----------------------------------~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~ 370 (684)
.+..+.+.|++|.|+.++.++++.+++.|+|+|+||+.+ +..|.
T Consensus 414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~ 492 (778)
T 3opb_A 414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIP 492 (778)
T ss_dssp CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHH
T ss_pred hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHH
Confidence 356778899999999999999999999999999999977 56799
Q ss_pred hHhhcCCHHHHHHHhccCCch--HHHHHHHHHHHHhccCC-CCCChh--hhhchHHHHHHHhcC-CcH------------
Q 035507 371 LVLSEGALIPLLAQLNEHTEL--SMLRIATTTLSNLCRGK-PRPLFD--QVRPALPALAQLIHS-NDE------------ 432 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~--~v~~~a~~~L~nL~~~~-~~~~~~--~~~~~l~~L~~lL~~-~d~------------ 432 (684)
.+.+.|++++|+.++...++. ..+..|+++|.+++... |...+. ...+++|.|+.+|.. +..
T Consensus 493 ~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~ 572 (778)
T 3opb_A 493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIK 572 (778)
T ss_dssp HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCC
T ss_pred HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccccc
Confidence 999999999999999665443 37899999999998654 211110 114899999999983 211
Q ss_pred -HHHHHHHHHHHhhccCCC----hHHHHHHHHh-chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcC---
Q 035507 433 -QVLTDACWALFGLSGDRN----NDKIQAVIEA-GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHG--- 503 (684)
Q Consensus 433 -~v~~~al~~L~~L~~~~~----~~~~~~~~~~-g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g--- 503 (684)
--+..|+.+|.||+ ..+ ++....++.. |+++.|..+|.+++..++..|+++++|++.......+.+.+.+
T Consensus 573 ~l~~feAL~ALTNLA-s~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 573 LTDNYEALLALTNLA-SSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp HHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred HHHHHHHHHHHHHHh-cCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 12779999999999 654 2345667884 9999999999999999999999999999975542223343222
Q ss_pred ---ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHh-CCHHHHHHHhcc--CCHhHHHHHHHHHHHhhc
Q 035507 504 ---AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDA-GLIGPLVNLLQN--AEFDIKEEAAWAISNASS 575 (684)
Q Consensus 504 ---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-g~l~~Li~ll~~--~~~~v~~~a~~aL~nl~~ 575 (684)
.++.|+.++... +.++|++|+|+|+|++.+.+...+.+++. ++++.++.++.+ ++.+++..++.++.|++.
T Consensus 652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 378899999888 99999999999999988777888888876 799999999999 899999999999999996
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=1.2e-21 Score=189.48 Aligned_cols=200 Identities=39% Similarity=0.569 Sum_probs=187.2
Q ss_pred hhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh
Q 035507 416 VRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 495 (684)
Q Consensus 416 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 495 (684)
..+..|.+..++.++|++++..|+++|.+++ ..+++....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++..
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 3677889999999999999999999999999 888899999999999999999999999999999999999999989889
Q ss_pred HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 496 TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 496 ~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
.+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++..+.+++.|++|.|++++.+++.+++..|+++|.|++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999 99999999999999999888999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507 576 RGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK 618 (684)
Q Consensus 576 ~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~ 618 (684)
. +++....+.+.|+++.|..++.+.+++++..+.++|.++..
T Consensus 168 ~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 G-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp S-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred C-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 4 47788888999999999999999999999999999998753
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=2.5e-21 Score=187.24 Aligned_cols=201 Identities=35% Similarity=0.551 Sum_probs=173.2
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507 288 IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 288 i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
...|..+.|+.+|.+++ +.++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.+++.|+++|+|++.+.+.
T Consensus 9 ~~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 34678999999999988 89999999999999988999999999999999999999999999999999999999976655
Q ss_pred CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 035507 368 CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSG 447 (684)
Q Consensus 368 ~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~ 447 (684)
.++.+.+.|+++.++.++ .++++.++..++++|++++
T Consensus 88 ~~~~i~~~g~i~~L~~lL------------------------------------------~~~~~~v~~~a~~~L~~l~- 124 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLL------------------------------------------SSPNEQILQEALWALSNIA- 124 (210)
T ss_dssp HHHHHHHTTCHHHHHHHT------------------------------------------TCSCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHCCCHHHHHHHH------------------------------------------cCCcHHHHHHHHHHHHHHH-
Confidence 555555555555555554 4556667777777777777
Q ss_pred CCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 035507 448 DRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWI 527 (684)
Q Consensus 448 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~ 527 (684)
..+++..+.+.+.|+++.|+.++.++++.++..|+++|+|++..++.....+.+.|+++.|+.++.++ ++.+++.|+++
T Consensus 125 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~a 203 (210)
T 4db6_A 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEA 203 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHH
Confidence 66677777888999999999999999999999999999999998888888999999999999999988 99999999999
Q ss_pred HHHHhc
Q 035507 528 ISNIAC 533 (684)
Q Consensus 528 L~nl~~ 533 (684)
|.+++.
T Consensus 204 L~~l~~ 209 (210)
T 4db6_A 204 LEKLQS 209 (210)
T ss_dssp HHHHCC
T ss_pred HHHHhc
Confidence 999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.86 E-value=4.5e-21 Score=193.55 Aligned_cols=189 Identities=16% Similarity=0.151 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHH
Q 035507 306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK-LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384 (684)
Q Consensus 306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~-lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~ 384 (684)
.+-+..|+..|.+++. +.++...++..|++|.|+. +|.++++.+++.|+|+|+|++.+++.+++.+.+.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678889999999998 6678888899999999999 9999999999999999999999999899999999999999999
Q ss_pred hccCCchHHHHHHHHHHHHhccCCCC-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchH
Q 035507 385 LNEHTELSMLRIATTTLSNLCRGKPR-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVC 463 (684)
Q Consensus 385 L~~~~~~~v~~~a~~~L~nL~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l 463 (684)
|..+++..+++.|+|+|++++++.+. .......+++|.|+.++.+++..++..|+|+|++++ .++++.++.+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~-~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL-VGHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH-HHCGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH-hCChHHHHHHHHcCCH
Confidence 96666889999999999999998633 223334789999999999999999999999999999 7788899999999999
Q ss_pred HHHHHhcCCCCcccHhHHHHHHHHHHcCChhhH
Q 035507 464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT 496 (684)
Q Consensus 464 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 496 (684)
+.|+.+|.+++..++..|+++|++++.+.+...
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~ 244 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV 244 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHH
Confidence 999999999999999999999999998865433
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=179.01 Aligned_cols=194 Identities=18% Similarity=0.195 Sum_probs=166.3
Q ss_pred cHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 250 ILPMMVAGVWSDDN--NLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 250 ~l~~lv~~L~s~~~--~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
.+|.++++|.++++ ++|..|++++++++..+++++..+++.|+||.|+++|++++ +++|+.|+|+|.||+.++++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 68999999999988 89999999999988777778889999999999999999987 9999999999999999889999
Q ss_pred HHHHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc---------------cCCch
Q 035507 328 KVVIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN---------------EHTEL 391 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---------------~~~~~ 391 (684)
..+++.|+||.|+.+|. +++.+++++|+.+|+||+.... .+..+.+ +++++|+.++. ...+.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence 99999999999999998 5789999999999999997764 4666665 46899887653 11367
Q ss_pred HHHHHHHHHHHHhccCC-CCCChhh-hhchHHHHHHHhcC------CcHHHHHHHHHHHHhhc
Q 035507 392 SMLRIATTTLSNLCRGK-PRPLFDQ-VRPALPALAQLIHS------NDEQVLTDACWALFGLS 446 (684)
Q Consensus 392 ~v~~~a~~~L~nL~~~~-~~~~~~~-~~~~l~~L~~lL~~------~d~~v~~~al~~L~~L~ 446 (684)
.++++|+++|.||+... ..+.... ..|+++.|+.+++. .+...+++++.+|.||+
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 99999999999999865 2222222 36788999999874 36789999999999998
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.81 E-value=7.4e-20 Score=176.50 Aligned_cols=197 Identities=20% Similarity=0.163 Sum_probs=171.3
Q ss_pred CHHHHHHhhcCCCCH--HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc
Q 035507 292 VVPRFVEFLMREDYP--QLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369 (684)
Q Consensus 292 ~i~~Lv~lL~~~~~~--~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r 369 (684)
.+|.++++|.+++ + ++|..|+++|.+++.++++.+..+++.|+||.|+++|.++++.+++.|+|+|.||+.+++..+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999887 5 899999999999998889999999999999999999999999999999999999999877789
Q ss_pred hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc----------------CCcHH
Q 035507 370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH----------------SNDEQ 433 (684)
Q Consensus 370 ~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~----------------~~d~~ 433 (684)
..+.+.|++++|+.+|..+.+.++++.++.+|+||+.....+ .....+++|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999966678899999999999999775332 3344568899887653 13679
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHh-chHHHHHHhcCC------CCcccHhHHHHHHHHHHcC
Q 035507 434 VLTDACWALFGLSGDRNNDKIQAVIEA-GVCGRLVELLGH------PSPSVLTPALWTVGNIVMG 491 (684)
Q Consensus 434 v~~~al~~L~~L~~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~ 491 (684)
++.+|..+|.|++ ..+++.++.+.+. |+++.|+.+++. .+.+.++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLs-s~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMS-SAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHT-TSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999 7677888888876 788999999864 2567889999999999864
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.73 E-value=6.1e-16 Score=173.68 Aligned_cols=382 Identities=13% Similarity=0.141 Sum_probs=284.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
..+|.+...++++++.++..|+.++..++...++ ......++|.+.+++++++ ..+|..|+.+|+.++.....
T Consensus 203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~--- 275 (588)
T 1b3u_A 203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP--- 275 (588)
T ss_dssp THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---
Confidence 3678888888889999999999999887765431 1233458889999988877 79999999999999862111
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC-CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG-CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~-~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
......+++.++.++.++++.+|..|+++|+.++...+. .+........++.+...+ ++.+..++..++++|..++..
T Consensus 276 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~ 354 (588)
T 1b3u_A 276 EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPI 354 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHH
T ss_pred ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHH
Confidence 122345689999999999999999999999999865432 111112234456666666 677889999999999998764
Q ss_pred CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507 408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487 (684)
Q Consensus 408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 487 (684)
-+. ......++|.+..++.+++++++..++.++..+. ...... .....++|.+..++.++++.+|..++.+++.
T Consensus 355 ~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~-~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~ 428 (588)
T 1b3u_A 355 LGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN-EVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428 (588)
T ss_dssp HCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH-HHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH-HhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 221 1234568899999999999999999999998887 321111 1224578899999999999999999999999
Q ss_pred HHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHH
Q 035507 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAA 567 (684)
Q Consensus 488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~ 567 (684)
++..-... .....++|.+...+.++ +..+|..|+.+++.++...... .....++|.|..++.+.+..+|..++
T Consensus 429 l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~ 501 (588)
T 1b3u_A 429 LAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTL 501 (588)
T ss_dssp HHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHH
T ss_pred HHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 87532111 11123678888999888 8999999999999998632111 12345889999888888999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHH
Q 035507 568 WAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLE 647 (684)
Q Consensus 568 ~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 647 (684)
++++.++.....+ .....+++.|..++++++++++..+++++..+....... + .....+.
T Consensus 502 ~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~------------~----~~~~~~p 561 (588)
T 1b3u_A 502 FCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS------------T----LQSEVKP 561 (588)
T ss_dssp HHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH------------H----HHHHHHH
T ss_pred HHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh------------h----hHHHHHH
Confidence 9999998632221 123458899999999999999999999999998753211 1 1134456
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHh
Q 035507 648 KIENLQSHDNNEIHEKSVKILETY 671 (684)
Q Consensus 648 ~L~~L~~~~~~~i~~~a~~ii~~~ 671 (684)
.|..+..+++++|+..|...+...
T Consensus 562 ~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 562 ILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCchhHHHHHHHHHHHh
Confidence 777788999999999999998765
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.72 E-value=9.6e-16 Score=172.04 Aligned_cols=381 Identities=12% Similarity=0.105 Sum_probs=287.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.++.+.+.+.++++.++..|+.++..++....+ ......++|.+..++++++ +.+|..|+.+|..++...+. .
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~ 237 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ---E 237 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH---H
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCH---H
Confidence 567777888899999999999999998865432 2234578899999998887 89999999999999874332 1
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
.....++|.+..++.++++.+|..++.+|+.++..... .......++.++..+ ++++..++..+++++..++...+
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhC
Confidence 22235788889999999999999999999999853211 112234577777777 67788999999999999998753
Q ss_pred CCCh--hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507 410 RPLF--DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487 (684)
Q Consensus 410 ~~~~--~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 487 (684)
.... .....++|.+..++.+.++.++..++++++.++ ..-.. ......++|.+..+++++++.+|..|+.+++.
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~-~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~ 389 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS-PILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH-HHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3211 345788999999999999999999999999988 32111 11223578899999999999999999999999
Q ss_pred HHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHH
Q 035507 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEA 566 (684)
Q Consensus 488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a 566 (684)
+....... .....++|.+..++.+. +..+|..++.+++.++.. ..+ .....++|.+...+.+.+..+|..|
T Consensus 390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 87643311 11235788899999888 999999999999999752 111 1122468889999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchH
Q 035507 567 AWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGL 646 (684)
Q Consensus 567 ~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 646 (684)
+.+++.++....++. ....+++.|..++.++++.++..+++++..+....... .+ ....+
T Consensus 462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----------~~-----~~~~~ 521 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----------IT-----TKHML 521 (588)
T ss_dssp HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----------HH-----HHHTH
T ss_pred HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----------HH-----HHHHH
Confidence 999999987433332 12347888888888899999999999999988653211 11 12456
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 035507 647 EKIENLQSHDNNEIHEKSVKILETYWC 673 (684)
Q Consensus 647 ~~L~~L~~~~~~~i~~~a~~ii~~~f~ 673 (684)
+.+..+..+++++|+..+.+.+..++.
T Consensus 522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 522 PTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 677777788889999888888877753
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.71 E-value=2e-17 Score=194.33 Aligned_cols=359 Identities=15% Similarity=0.138 Sum_probs=255.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHH----HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEV----IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS 324 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~i----i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~ 324 (684)
+.++.+++.+.++++..+..|+.+|..++...++....- .-..++|.+++++++++ +.+|..|+++|.++....+
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence 468999999999999999999999999876543221100 01246788888888777 8999999999998887544
Q ss_pred hhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404 (684)
Q Consensus 325 ~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL 404 (684)
...... -.++++.+..++.++++.+|..|+++|++++...+..-.... .+.++.++..+ .+.+..++..|++++..+
T Consensus 207 ~~~~~~-~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~-~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 QALMLH-IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRT-QDQDENVALEACEFWLTL 283 (852)
T ss_dssp HHHHTS-HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence 221111 124678888888999999999999999999976543111111 13556666666 567889999999999999
Q ss_pred ccCCCCCC--hhhhhchHHHHHHHhc-----------C-----------CcHHHHHHHHHHHHhhccCCChHHHHHHHHh
Q 035507 405 CRGKPRPL--FDQVRPALPALAQLIH-----------S-----------NDEQVLTDACWALFGLSGDRNNDKIQAVIEA 460 (684)
Q Consensus 405 ~~~~~~~~--~~~~~~~l~~L~~lL~-----------~-----------~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~ 460 (684)
+....... ......++|.++..+. + .+..++..+..++..++ ....+ .+. .
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la-~~~~~---~~~-~ 358 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA-NVYRD---ELL-P 358 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH-HHHGG---GGH-H
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH-HhccH---HHH-H
Confidence 97641111 1123567777777762 2 12346888888888888 32221 111 2
Q ss_pred chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHH
Q 035507 461 GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQ 540 (684)
Q Consensus 461 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 540 (684)
.+++.+...+.++++.+|..|++++++++.+........+ .++++.++..+.++ ++.||..|+|++++++........
T Consensus 359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~ 436 (852)
T 4fdd_A 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPP 436 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchH
Confidence 4678888889999999999999999999988875443222 36789999999988 999999999999999863221111
Q ss_pred HHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507 541 AVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 541 ~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~ 620 (684)
...-.++++.|++.+.+.++.++..|++++.+++.........++ .++++.|..+++..+.+....+++++..+....
T Consensus 437 ~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~ 514 (852)
T 4fdd_A 437 DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514 (852)
T ss_dssp TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 111235788999999888999999999999999864433333332 346777888887777777777888888887543
No 42
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.69 E-value=2.5e-15 Score=168.39 Aligned_cols=334 Identities=16% Similarity=0.147 Sum_probs=239.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.++.+.+.++++|+.++-.|+.++.++... ... ..+++.+.+++.+++ +.+|..|++++.++...+++..
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~--~~~-----~~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~-- 156 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRVD--KIT-----EYLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV-- 156 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCSG--GGH-----HHHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCChH--HHH-----HHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc--
Confidence 456777778888888888888888775421 122 234678899999887 9999999999999998666533
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
.+.+.++.+..+|.++++.|+.+|+++|+.++.+.+..+......+.+..|+..+ ...++-.+..++.++..++..
T Consensus 157 -~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~-- 232 (591)
T 2vgl_B 157 -EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPK-- 232 (591)
T ss_dssp -HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCC--
T ss_pred -ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCC--
Confidence 2346789999999999999999999999999988765321112223466777777 455667777777777777633
Q ss_pred CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC---ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHH
Q 035507 410 RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR---NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVG 486 (684)
Q Consensus 410 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~---~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 486 (684)
.......+++.+..++++.++.|+..|++++.++. .. +++..+.+. ..+.+.|+.++. +++.++..|+.+++
T Consensus 233 --~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~-~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 233 --DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFL-ELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp --SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC-CSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh-hccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 22345678888888999999999999999999987 42 233344332 345677777664 78899999999999
Q ss_pred HHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHH
Q 035507 487 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEA 566 (684)
Q Consensus 487 nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a 566 (684)
.++...+..... .+..+. .+.+. +..+|..|++++.+++... ++. .+++.|...+.+.+.+++..+
T Consensus 308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~-----~iv~~L~~~l~~~d~~~r~~~ 373 (591)
T 2vgl_B 308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIA-----QVLAELKEYATEVDVDFVRKA 373 (591)
T ss_dssp HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THH-----HHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHH-----HHHHHHHHHHhcCCHHHHHHH
Confidence 998765532211 111111 12244 5788999999999887542 222 256677788888889999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 567 AWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 567 ~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
+++++.++.... ... ..+++.|.+++......+...++.++..++...+.
T Consensus 374 v~aI~~la~~~~-~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~ 423 (591)
T 2vgl_B 374 VRAIGRCAIKVE-QSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN 423 (591)
T ss_dssp HHHHHHHHTTCH-HHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHhCh-hHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc
Confidence 999999887542 222 22577888888888888888888888888765443
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.69 E-value=5.7e-16 Score=181.88 Aligned_cols=391 Identities=14% Similarity=0.124 Sum_probs=276.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507 253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE 332 (684)
Q Consensus 253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~ 332 (684)
.++..+.+.++.+|..|+..|++.+...-.....-....+-+.+++.|.+++ +.+|..++.+++.++..+... .-
T Consensus 52 ~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~w 126 (852)
T 4fdd_A 52 FVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----NW 126 (852)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----TC
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----cc
Confidence 3444345778999999999999988754322222233455667788888777 899999999999999843111 12
Q ss_pred cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHh----hcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVL----SEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 333 ~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~----~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
.+.++.|+..+.++++.+++.++.+|+.++.+.+...+.-. -...++.++..+ .+++..++..|++++.++....
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~ 205 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISR 205 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcc
Confidence 36789999999999999999999999999976543111000 112355555555 5678899999999999888664
Q ss_pred CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
+.........+++.+..++.+++++++..++++|..++ ....+.....++ ++++.+...+.+.++.++..|+.++..+
T Consensus 206 ~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~-~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 206 TQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL-EVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH-HHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 32222334678888999999999999999999999999 555444333333 5788888999999999999999999998
Q ss_pred HcCChhhHHHHHh---cCChHHHHHHh-----------cc--C--------CChhHHHHHHHHHHHHhcCChHHHHHHHH
Q 035507 489 VMGDDFQTQCIIN---HGAVPCLLALL-----------IH--N--------HKNSIKKEVSWIISNIACGNREQIQAVID 544 (684)
Q Consensus 489 ~~~~~~~~~~~i~---~g~l~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 544 (684)
+.... .. ..+. ..++|.++..+ .+ . .+..+|+.|+.++..++...++. ++
T Consensus 284 ~~~~~-~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~- 357 (852)
T 4fdd_A 284 AEQPI-CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL- 357 (852)
T ss_dssp TTSTT-HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-
T ss_pred hcchh-HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-
Confidence 86432 11 1221 13466666666 22 0 13468999999999998643222 12
Q ss_pred hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccc
Q 035507 545 AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEK 624 (684)
Q Consensus 545 ~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~ 624 (684)
..++|.+...+.+.++.+|..|++++++++.+.......+ -.++++.+..+++++++.++..+.+++.++........
T Consensus 358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~--l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 435 (852)
T 4fdd_A 358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP 435 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence 2367888888888999999999999999998654322222 23478899999999999999999999999887543221
Q ss_pred cCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507 625 NTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 625 ~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f 672 (684)
.. .+. .+.+..|.....++++.++..|...+..+.
T Consensus 436 ~~--------~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 436 PD--------TYL-----KPLMTELLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp TT--------TTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HH--------HHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 00 011 123455555556778999999999887764
No 44
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.67 E-value=3.2e-15 Score=151.15 Aligned_cols=259 Identities=14% Similarity=0.147 Sum_probs=204.3
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507 288 IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 288 i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
...+.++.|++.|.+++ +.+|..|+++|+++.. .++++.|+.++.++++.+|..|+++|+.+......
T Consensus 20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 45678999999999887 8999999999999874 24688999999999999999999999998643322
Q ss_pred CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 035507 368 CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSG 447 (684)
Q Consensus 368 ~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~ 447 (684)
.. ..++.+...+.++++..++..++++|+++....+ ......++.+..++.++++.++..++++|+++.
T Consensus 88 ~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~- 156 (280)
T 1oyz_A 88 ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN- 156 (280)
T ss_dssp HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-
Confidence 10 1122333333467889999999999999975431 123467899999999999999999999999987
Q ss_pred CCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 035507 448 DRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWI 527 (684)
Q Consensus 448 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~ 527 (684)
. .+.++.|+.++.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a 215 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG 215 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3 2478999999999999999999999999854333 2567889999888 99999999999
Q ss_pred HHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CChHHH
Q 035507 528 ISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC-ADPKIV 606 (684)
Q Consensus 528 L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~-~~~~v~ 606 (684)
|+++.. ...++.|+..+.+++ ++..|+++|+.+-. + .+++.|..++.. .+++++
T Consensus 216 L~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 216 LSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEII 270 (280)
T ss_dssp HHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHH
T ss_pred HHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHH
Confidence 999862 247889999997654 88999999998843 1 367788888864 577888
Q ss_pred HHHHHHHHH
Q 035507 607 TVCLEGLEN 615 (684)
Q Consensus 607 ~~al~~L~~ 615 (684)
..+++.+.+
T Consensus 271 ~~~~~~l~~ 279 (280)
T 1oyz_A 271 TSAIDKLKR 279 (280)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 887777653
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.64 E-value=9e-14 Score=149.64 Aligned_cols=367 Identities=16% Similarity=0.136 Sum_probs=269.0
Q ss_pred hccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCch
Q 035507 248 LEILPMMVAGVWSD-DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRE-DYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 248 ~~~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
.+.++.|+..+.+. -.+-|..|+..|+.+.... ...+.+++++.|+..|+.+ ++.++...++.+|.++...+++
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y----~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY----RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT----TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh----HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 45789999988854 4789999999999975432 2345577899999999765 3578888999999988774432
Q ss_pred -----------------hHHHHH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC-CchhHhh-cCCHHHHHHHh
Q 035507 326 -----------------NTKVVI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG-CRDLVLS-EGALIPLLAQL 385 (684)
Q Consensus 326 -----------------~~~~i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~-~r~~i~~-~g~l~~Ll~~L 385 (684)
.++.+. +.+.++.|+.+|.+++..+|..++.+|..|+...+. .++.+.. .++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 222333 457899999999999999999999999999977766 6777774 48999999999
Q ss_pred ccCCchHHHHHHHHHHHHhccCCCCCChhh-hhchHHHHHHHhcCCc----HHHHHHHHHHHHhhccCCChHHHHHHHHh
Q 035507 386 NEHTELSMLRIATTTLSNLCRGKPRPLFDQ-VRPALPALAQLIHSND----EQVLTDACWALFGLSGDRNNDKIQAVIEA 460 (684)
Q Consensus 386 ~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~-~~~~l~~L~~lL~~~d----~~v~~~al~~L~~L~~~~~~~~~~~~~~~ 460 (684)
++....++..++..|.+|+++.+..+... .+++++.|+.++..+. ..+..+++..+.+|. ..+..+...+.+.
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLL-r~N~sNQ~~FrEt 253 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLL-KNNNSNQNFFKEG 253 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHH-TTCHHHHHHHHHT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHH-hcCHHHHHHHHHc
Confidence 56677888899999999999974444433 4799999999998644 478999999999999 8888899999999
Q ss_pred chHHHHHHhcCCCCcc------cHhH---HHHHHHHHHcCC------hhhHHHHHhcCChHHHHHHhccCC-ChhHHHHH
Q 035507 461 GVCGRLVELLGHPSPS------VLTP---ALWTVGNIVMGD------DFQTQCIINHGAVPCLLALLIHNH-KNSIKKEV 524 (684)
Q Consensus 461 g~l~~L~~lL~~~~~~------v~~~---al~~L~nl~~~~------~~~~~~~i~~g~l~~L~~lL~~~~-~~~v~~~a 524 (684)
|.++.|..++..+... .... ++.++.-++... ......+.++|+++.|+.++..+. ...++.+|
T Consensus 254 ~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~A 333 (651)
T 3grl_A 254 SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTET 333 (651)
T ss_dssp TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHH
Confidence 9999999999764332 1222 556666666542 234566789999999999987542 56799999
Q ss_pred HHHHHHHhcCChHHHHHHHHhC---------CHHHHHHHhccC-CHhHHHHHHHHHHHhhcCCCHHHHHHHHHC----C-
Q 035507 525 SWIISNIACGNREQIQAVIDAG---------LIGPLVNLLQNA-EFDIKEEAAWAISNASSRGTHDQIKYLVTE----G- 589 (684)
Q Consensus 525 ~~~L~nl~~~~~~~~~~l~~~g---------~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----g- 589 (684)
..+++.+..+++.....+.+.. ++..|+.++.+. ..++|..|+.++..+..+. .+....+... .
T Consensus 334 l~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~i~~~llp~~~ 412 (651)
T 3grl_A 334 INTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVSTLLPSTI 412 (651)
T ss_dssp HHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHHHHHhcCCccc
Confidence 9999999999888777766532 344444445443 6889999999999999853 3333333322 1
Q ss_pred -----Ch---HHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 590 -----CI---KPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 590 -----~l---~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
.+ ..++..+-+.|+.-.-.+.-++..++....
T Consensus 413 ~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~ 452 (651)
T 3grl_A 413 DATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENA 452 (651)
T ss_dssp CCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred ccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCH
Confidence 01 123444445566443445555666666543
No 46
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.61 E-value=7.5e-13 Score=142.54 Aligned_cols=410 Identities=14% Similarity=0.137 Sum_probs=292.8
Q ss_pred ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCC-----------------cHHHHH-HcCCHHHHHHhhcCCCCHHH
Q 035507 249 EILPMMVAGVWS--DDNNLQLEATTQFQKLLSIESM-----------------PIEEVI-ESGVVPRFVEFLMREDYPQL 308 (684)
Q Consensus 249 ~~l~~lv~~L~s--~~~~~~~~a~~~L~~l~s~~~~-----------------~~~~ii-~~g~i~~Lv~lL~~~~~~~v 308 (684)
.+++.++..|+. .|.++...++..|.++++.+.. ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 478999999985 5788888899999888876542 112332 4578999999999888 899
Q ss_pred HHHHHHHHHHHhcCCch-hHHHHH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc
Q 035507 309 QFQAAWALTNIASGTSE-NTKVVI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN 386 (684)
Q Consensus 309 ~~~A~~~L~~l~~~~~~-~~~~i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~ 386 (684)
|..|+.+|..++...++ ..+.+. ..++++.|+.+|+++...+|..++..|.+|+.++++.++.+.-.|+++.|+..+.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999987777 667777 4499999999999999999999999999999999999999988899999999996
Q ss_pred cCC---chHHHHHHHHHHHHhccCCC-CCChhhhhchHHHHHHHhcCCcH------HHHHH---HHHHHHhhccCC----
Q 035507 387 EHT---ELSMLRIATTTLSNLCRGKP-RPLFDQVRPALPALAQLIHSNDE------QVLTD---ACWALFGLSGDR---- 449 (684)
Q Consensus 387 ~~~---~~~v~~~a~~~L~nL~~~~~-~~~~~~~~~~l~~L~~lL~~~d~------~v~~~---al~~L~~L~~~~---- 449 (684)
... .-.+...++.++.||.+..+ +.......+++|.|..++..+++ ....+ ++.++.-++ ..
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv-~~~~~~ 297 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLV-SPNNPP 297 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHT-CTTSCH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHh-CCCCCC
Confidence 443 23677899999999999973 44444558899999999875432 13333 666666666 33
Q ss_pred --ChHHHHHHHHhchHHHHHHhcCCC--CcccHhHHHHHHHHHHcCChhhHHHHHhcC---------ChHHHHHHhccCC
Q 035507 450 --NNDKIQAVIEAGVCGRLVELLGHP--SPSVLTPALWTVGNIVMGDDFQTQCIINHG---------AVPCLLALLIHNH 516 (684)
Q Consensus 450 --~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~i~~g---------~l~~L~~lL~~~~ 516 (684)
...+...+.+.|+++.|++++..+ ...++..|+.+++.+.++++...+.+.+.. ++..|+.++.+.+
T Consensus 298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~ 377 (651)
T 3grl_A 298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ 377 (651)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence 224566788999999999998765 567889999999999999987776665432 3333444455554
Q ss_pred ChhHHHHHHHHHHHHhcCChHHHHHHHHh----------CC---HHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHH
Q 035507 517 KNSIKKEVSWIISNIACGNREQIQAVIDA----------GL---IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIK 583 (684)
Q Consensus 517 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------g~---l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 583 (684)
...+|.+|+.++..+..++++....++.. +. -..+...+-+.|+--.-.|+.++.++... +++...
T Consensus 378 ~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~ 456 (651)
T 3grl_A 378 PFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKE 456 (651)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHH
Confidence 68899999999999998876544444422 11 11344555556765556688889998873 343333
Q ss_pred HHHH------C-----CChHHHHhhccC-CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHH
Q 035507 584 YLVT------E-----GCIKPLCDLLQC-ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIEN 651 (684)
Q Consensus 584 ~l~~------~-----g~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~ 651 (684)
.+.+ . -.+..+..+|.. .++.+...-+..|...+..+. +....++.+...+..|-.
T Consensus 457 ~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p------------~AV~dFL~~~s~l~~L~~ 524 (651)
T 3grl_A 457 QLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCP------------IAVTHFLHNSANVPFLTG 524 (651)
T ss_dssp HHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCH------------HHHHHHHHSTTHHHHHHH
T ss_pred HHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCh------------HHHHHHHcCCchHHHHHH
Confidence 3222 1 114455565543 466776666777766665443 335677777777777665
Q ss_pred hh-cC-C--CHHHHHHHHHHHHHhcC
Q 035507 652 LQ-SH-D--NNEIHEKSVKILETYWC 673 (684)
Q Consensus 652 L~-~~-~--~~~i~~~a~~ii~~~f~ 673 (684)
.. ++ . +.-|+-.+.-++--.|.
T Consensus 525 ~i~~~~~~~~~lvqGL~a~LLGi~ye 550 (651)
T 3grl_A 525 QIAENLGEEEQLVQGLCALLLGISIY 550 (651)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCcchHHHHHHHHHHHHHHhh
Confidence 43 32 2 23467777777665443
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.60 E-value=1e-13 Score=155.18 Aligned_cols=330 Identities=15% Similarity=0.139 Sum_probs=245.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
..+.+++.+++++...+..+..++..++...+ +. . .-+++.+.+-|++++ +.+|..|+.+|+++.. ++....
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~---e~-~-~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~~ 121 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP---DM-A-IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITEY 121 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH---HH-H-HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc---hH-H-HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHHH
Confidence 56788999999999999888888887765322 11 1 235678888888877 9999999999998863 443333
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
.++.+..++.++++.||..|++++++++...++ .+...+.++.+..+| .++++.++.+|+++|..++...+
T Consensus 122 -----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 122 -----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp -----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCC
T ss_pred -----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCC
Confidence 367889999999999999999999999986655 233345677788877 68899999999999999998865
Q ss_pred CC-ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507 410 RP-LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488 (684)
Q Consensus 410 ~~-~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 488 (684)
.. ........++.++..+.+.++..+..++.+++.++ ..++... ..+++.+..++++.++.++..|++++..+
T Consensus 193 ~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~-~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 193 NSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN-PKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC-CCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC-CCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 33 23334566777888888889999999999999988 5444332 35678899999999999999999999998
Q ss_pred HcC---ChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHH
Q 035507 489 VMG---DDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEE 565 (684)
Q Consensus 489 ~~~---~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~ 565 (684)
... +++..+.+. ..+.+.|+.++. + ++.+|..|+.+++.++...++..+. .+..+. .+.+.+..+|..
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~~ 337 (591)
T 2vgl_B 267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKLE 337 (591)
T ss_dssp CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHHH
T ss_pred hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHHH
Confidence 742 333344332 356677777664 6 8999999999999998754433221 111121 122345889999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 566 AAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 566 a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
|++.+.+++...+.+ . +++.|.+++.+.+.+++..+++++..+...
T Consensus 338 al~~L~~l~~~~nv~---~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 338 KLDIMIRLASQANIA---Q-----VLAELKEYATEVDVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp HHHHHHHTCCSSTHH---H-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCChhhHH---H-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 999999998644322 2 466677888888899988888888887754
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.59 E-value=7.5e-14 Score=141.02 Aligned_cols=254 Identities=15% Similarity=0.078 Sum_probs=199.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
..++.+++.|.++++.++..|+++|.++.. .+.++.|++++.+++ +.+|..|+++|+.+...... ..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~~-~~ 89 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKC-ED 89 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTT-HH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccccc-ch
Confidence 478999999999999999999999998642 236789999999887 89999999999998752221 11
Q ss_pred HHHhcCChHHHHH-hcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 329 VVIEHDAVPIFVK-LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 329 ~i~~~g~i~~Li~-lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
..++.|.. ++.++++.++..++++|+++....+.. ....++.++..+ .+++..++..++++|+++...
T Consensus 90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITA-FDKSTNVRRATAFAISVINDK 158 (280)
T ss_dssp -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCCH
Confidence 12344442 457789999999999999997433221 123467777777 678899999999999987542
Q ss_pred CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507 408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487 (684)
Q Consensus 408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 487 (684)
..+|.|..++.++++.++..++++|+.+. ...+ .+++.|..++.++++.++..|+++|++
T Consensus 159 ----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 159 ----------ATIPLLINLLKDPNGDVRNWAAFAININK-YDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT-CCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhc-cCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999986 3332 457889999999999999999999999
Q ss_pred HHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc-CCHhHHHHH
Q 035507 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN-AEFDIKEEA 566 (684)
Q Consensus 488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~-~~~~v~~~a 566 (684)
+. . ...++.|...+.++ + ++..|+++|+.+.. ..++|.|..++.+ .+.++...+
T Consensus 219 ~~--~---------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RK--D---------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TT--C---------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred hC--C---------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence 85 2 24788899999765 4 89999999999854 1478999999875 477888887
Q ss_pred HHHHH
Q 035507 567 AWAIS 571 (684)
Q Consensus 567 ~~aL~ 571 (684)
..++.
T Consensus 274 ~~~l~ 278 (280)
T 1oyz_A 274 IDKLK 278 (280)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 77764
No 49
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.54 E-value=3.4e-13 Score=158.50 Aligned_cols=400 Identities=12% Similarity=0.150 Sum_probs=266.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH-
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT- 327 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~- 327 (684)
.++.+.+.+.+.++..+..|+.++..++.... ......+ ..+++.++..+.+++ +.+|..|+|+++.++..-....
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcC
Confidence 34555566678899999999999999886543 1222222 257889999998887 9999999999999986311100
Q ss_pred HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-----CCchhHhhcCCHHHHHHHhcc-CCchHHHHHHHHHH
Q 035507 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-----GCRDLVLSEGALIPLLAQLNE-HTELSMLRIATTTL 401 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-----~~r~~i~~~g~l~~Ll~~L~~-~~~~~v~~~a~~~L 401 (684)
..-.-..+++.++..+.++ +.++..|+++|.+++.... .....+ ...++.++..+.. +.+..++..++.++
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 0000123477888888775 8999999999999985421 111111 2345666777743 33478899999999
Q ss_pred HHhccCCCCCChhhhhchHHHHHHHhcC---------------CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHH
Q 035507 402 SNLCRGKPRPLFDQVRPALPALAQLIHS---------------NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRL 466 (684)
Q Consensus 402 ~nL~~~~~~~~~~~~~~~l~~L~~lL~~---------------~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L 466 (684)
..++...+.........++|.++..+.. ....++..++.++..++ ........... ..+++.+
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~-~~l~~~l 602 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI-RKSPSSVEPVA-DMLMGLF 602 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH-HHCGGGTGGGH-HHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHH-HHHHHHH
Confidence 9998876544444556777777776652 13567788999999888 44333222122 2477888
Q ss_pred HHhcCCCCc-ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHh
Q 035507 467 VELLGHPSP-SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDA 545 (684)
Q Consensus 467 ~~lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 545 (684)
...+.+.+. .++..++.+++.++..........+. .++|.+...+.++ ++.++..|+.+++.++........... .
T Consensus 603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~ 679 (861)
T 2bpt_A 603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-D 679 (861)
T ss_dssp HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-H
T ss_pred HHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-H
Confidence 888887766 89999999999998654433332222 4788999999776 888999999999999864333333333 3
Q ss_pred CCHHHHHHHhccCC--HhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC-----------hHHHHHHHHH
Q 035507 546 GLIGPLVNLLQNAE--FDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD-----------PKIVTVCLEG 612 (684)
Q Consensus 546 g~l~~Li~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~-----------~~v~~~al~~ 612 (684)
.+++.+++.+.+.+ .+++..++.+++.++.........++-. +++.+...+.... ..++..++++
T Consensus 680 ~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~--~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~ 757 (861)
T 2bpt_A 680 AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDA 757 (861)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Confidence 47888888888764 8899999999999987443344444322 5777777776431 3577888899
Q ss_pred HHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCC----CHHHHHHHHHHHHHhc
Q 035507 613 LENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD----NNEIHEKSVKILETYW 672 (684)
Q Consensus 613 L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~----~~~i~~~a~~ii~~~f 672 (684)
+..++...... ...+...+. ..++.|.....+. +.+++..|...+..+.
T Consensus 758 ~~~i~~~l~~~---------~~~~~~~~~--~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~ 810 (861)
T 2bpt_A 758 YVGIVAGLHDK---------PEALFPYVG--TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA 810 (861)
T ss_dssp HHHHHHHTTTC---------HHHHGGGHH--HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC---------HHHHHHHHH--HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence 98888653211 001111111 1234444443332 7889999988887763
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.52 E-value=5e-13 Score=157.03 Aligned_cols=357 Identities=14% Similarity=0.162 Sum_probs=247.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-----------------CcHHHHHHcCCHHHHHHhhcCC------CCH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-----------------MPIEEVIESGVVPRFVEFLMRE------DYP 306 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-----------------~~~~~ii~~g~i~~Lv~lL~~~------~~~ 306 (684)
.++.+...+.+.+..++..|+..+..++.... ...... -..++|.++..+... ++.
T Consensus 267 l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~d~~d~~~ 345 (861)
T 2bpt_A 267 LYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQNEDPEDDDW 345 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCCCCC-CCCCC
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHhcccccccccC
Confidence 45666677788889999999988887765421 011111 145788888888752 224
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHh--hcCCHHHHHHH
Q 035507 307 QLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVL--SEGALIPLLAQ 384 (684)
Q Consensus 307 ~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~--~~g~l~~Ll~~ 384 (684)
.++..|..+|..++....+. ++ ..+++.+...+.++++.+|+.|+++++.++..... +.+. -...++.++..
T Consensus 346 ~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~il~~l~~~ 419 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK--VQRTYYVHQALPSILNL 419 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH--HHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHH
Confidence 79999999999998732211 11 13467777778888999999999999999965321 1111 11345666666
Q ss_pred hccCCchHHHHHHHHHHHHhccCCCC--CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh----HHHHHHH
Q 035507 385 LNEHTELSMLRIATTTLSNLCRGKPR--PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN----DKIQAVI 458 (684)
Q Consensus 385 L~~~~~~~v~~~a~~~L~nL~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~----~~~~~~~ 458 (684)
+ .++++.++..++|+++.++...+. ........++|.++..+.++ +.++..+++++.+++ .... .......
T Consensus 420 l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~-~~~~~~~~~~l~~~~ 496 (861)
T 2bpt_A 420 M-NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLV-EQLAEATPSPIYNFY 496 (861)
T ss_dssp G-GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHH-HHHSSSSSCGGGGGH
T ss_pred c-CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH-HhcccccchhhHHHH
Confidence 6 567889999999999999876321 12334678889999888775 899999999999988 3211 1111111
Q ss_pred HhchHHHHHHhcCCCC--cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC--------------CChhHHH
Q 035507 459 EAGVCGRLVELLGHPS--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN--------------HKNSIKK 522 (684)
Q Consensus 459 ~~g~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~--------------~~~~v~~ 522 (684)
..+++.++..+.+.+ +.++..++.+++.++...+......+. .++|.++..+... ....++.
T Consensus 497 -~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 574 (861)
T 2bpt_A 497 -PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS 574 (861)
T ss_dssp -HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHH
Confidence 246788888887543 788999999999998766544333332 3666777766421 0346788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCH-hHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 035507 523 EVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEF-DIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA 601 (684)
Q Consensus 523 ~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~ 601 (684)
.++.++++++............ .+++.++..+...+. .++..++++++.++.....+...++-. +++.+...+++.
T Consensus 575 ~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~ 651 (861)
T 2bpt_A 575 NILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQV 651 (861)
T ss_dssp HHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhccc
Confidence 9999999998744333332232 478888888988777 899999999999986443344444433 788888888888
Q ss_pred ChHHHHHHHHHHHHHHhccc
Q 035507 602 DPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 602 ~~~v~~~al~~L~~il~~~~ 621 (684)
+++++..++.++..+.....
T Consensus 652 ~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 652 DSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp TSHHHHHHHHHHHHHHHHTG
T ss_pred cHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999887654
No 51
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.52 E-value=1.4e-12 Score=153.57 Aligned_cols=406 Identities=14% Similarity=0.180 Sum_probs=261.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH-
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT- 327 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~- 327 (684)
.++.+...+.+.++.++..|+.++..++.... ..... .-..++|.++..+++++ +.+|..|+|+|++++...+...
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence 45566677788899999999999999886543 11222 22458899999998887 8999999999999998433210
Q ss_pred HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC---------------CCchhHhhcCCHHHHHHHhccCC--c
Q 035507 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSS---------------GCRDLVLSEGALIPLLAQLNEHT--E 390 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~---------------~~r~~i~~~g~l~~Ll~~L~~~~--~ 390 (684)
..-.-..+++.++..+.++ +.++..|+++|++++.... .....+ ...++.++..+.... +
T Consensus 445 ~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~ 521 (876)
T 1qgr_A 445 NDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQ 521 (876)
T ss_dssp STTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCS
T ss_pred cHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcch
Confidence 0000124577888888775 8999999999999984311 111111 234666666664332 3
Q ss_pred hHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC-----------Cc----HHHHHHHHHHHHhhccCCCh-HHH
Q 035507 391 LSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS-----------ND----EQVLTDACWALFGLSGDRNN-DKI 454 (684)
Q Consensus 391 ~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-----------~d----~~v~~~al~~L~~L~~~~~~-~~~ 454 (684)
..++..+..++..++...+.........++|.++..+.. .| ++++..+++++..++ ..-. ...
T Consensus 522 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~-~~~~~~~~ 600 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVL-RKVQHQDA 600 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHH-TTSCHHHH
T ss_pred hhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHH-HHhChhhh
Confidence 567788889999988876554455566777777766542 22 456788999999998 5444 333
Q ss_pred HHHHHhchHHHHHHhcCCCC--cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 035507 455 QAVIEAGVCGRLVELLGHPS--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA 532 (684)
Q Consensus 455 ~~~~~~g~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 532 (684)
.... ..+++.++.++.+.. ..++..++.+++.++..........+. .+++.+...+.+..++.+|..|+++++.++
T Consensus 601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 3222 357888999998764 468999999999998643332222222 367888888876436789999999999998
Q ss_pred cCChHHHHHHHHhCCHHHHHHHhcc--CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC--------
Q 035507 533 CGNREQIQAVIDAGLIGPLVNLLQN--AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD-------- 602 (684)
Q Consensus 533 ~~~~~~~~~l~~~g~l~~Li~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~-------- 602 (684)
......+...+ ..+++.++..+.+ .+.+++..+++++++++.....+...++ ..+++.+...+....
T Consensus 679 ~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~ 755 (876)
T 1qgr_A 679 RALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMV 755 (876)
T ss_dssp HHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHH
T ss_pred HHHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHH
Confidence 64323333333 3588889999887 3678999999999999863223332222 125566666665432
Q ss_pred ---hHHHHHHHHHHHHHHhcccccccC-CCCCcchhHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 035507 603 ---PKIVTVCLEGLENILKVGEAEKNT-DSDIGDINQFAQLVEEAEGLEKIENLQSHD--NNEIHEKSVKILETY 671 (684)
Q Consensus 603 ---~~v~~~al~~L~~il~~~~~~~~~-~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~--~~~i~~~a~~ii~~~ 671 (684)
..++..++.++..++......... ........+|...+ +..+..+..++ +..++..|...+..+
T Consensus 756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l 825 (876)
T 1qgr_A 756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDL 825 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 267888888888887763321000 00000112232222 23444444555 678888888777664
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.50 E-value=9e-14 Score=150.95 Aligned_cols=360 Identities=13% Similarity=0.091 Sum_probs=247.3
Q ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCcHH-----------HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHH
Q 035507 250 ILPMMVAGVWSD--DNNLQLEATTQFQKLLSIESMPIE-----------EVIESGVVPRFVEFLMREDYPQLQFQAAWAL 316 (684)
Q Consensus 250 ~l~~lv~~L~s~--~~~~~~~a~~~L~~l~s~~~~~~~-----------~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L 316 (684)
.+..+...+.++ ++.+|..|+..|++++........ .-....+-..++..|.+++ +.+ ..++.++
T Consensus 36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i 113 (462)
T 1ibr_B 36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV 113 (462)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence 445666666654 689999999999998865421110 1112234456778887776 677 8899999
Q ss_pred HHHhcCCchhHHHHHhcCChHHHHHhcCCC--ChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHHHhccCC-chH
Q 035507 317 TNIASGTSENTKVVIEHDAVPIFVKLLASP--SDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLAQLNEHT-ELS 392 (684)
Q Consensus 317 ~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~~L~~~~-~~~ 392 (684)
+.++....... .-.+.++.|+..+.++ ++.+++.|+.+|+.++.+. +..-... ....++.++..+.... +..
T Consensus 114 ~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~ 189 (462)
T 1ibr_B 114 AGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNN 189 (462)
T ss_dssp HHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHH
T ss_pred HHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHH
Confidence 99987321100 1246789999999888 8999999999999998643 2111111 1235667777774443 789
Q ss_pred HHHHHHHHHHHhccCCC--CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc
Q 035507 393 MLRIATTTLSNLCRGKP--RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL 470 (684)
Q Consensus 393 v~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL 470 (684)
++..|++++.++..... .........+++.+...+.+.+++++..+++++..++ ..........+..++++.++..+
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~-~~~~~~~~~~~~~~l~~~~~~~~ 268 (462)
T 1ibr_B 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM-SLYYQYMETYMGPALFAITIEAM 268 (462)
T ss_dssp HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH-HHCGGGCTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999764321 0011111235777777888889999999999999988 44333222222226777888888
Q ss_pred CCCCcccHhHHHHHHHHHHcCChh---------------------hHHHHHhcCChHHHHHHhccC------CChhHHHH
Q 035507 471 GHPSPSVLTPALWTVGNIVMGDDF---------------------QTQCIINHGAVPCLLALLIHN------HKNSIKKE 523 (684)
Q Consensus 471 ~~~~~~v~~~al~~L~nl~~~~~~---------------------~~~~~i~~g~l~~L~~lL~~~------~~~~v~~~ 523 (684)
.+.++.++..|+..++.++..... ..+..+ ..++|.++..+... .+..+|..
T Consensus 269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~ 347 (462)
T 1ibr_B 269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKA 347 (462)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHH
Confidence 888999999999999998754210 011001 23567777777432 14579999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCh
Q 035507 524 VSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADP 603 (684)
Q Consensus 524 a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~ 603 (684)
|+.+|..++...++. ++ ..++|.+...+.+.+..+|..|+.+++.++.+..++..... -..+++.+..++.++++
T Consensus 348 a~~~L~~l~~~~~~~---~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~ 422 (462)
T 1ibr_B 348 AGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSV 422 (462)
T ss_dssp HHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCH
Confidence 999999998743321 22 24778888889889999999999999999986543221111 14578999999999999
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 035507 604 KIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 604 ~v~~~al~~L~~il~~~~~ 622 (684)
.++..++++|.++......
T Consensus 423 ~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 423 VVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 9999999999999987543
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.49 E-value=1.4e-12 Score=146.41 Aligned_cols=327 Identities=15% Similarity=0.112 Sum_probs=238.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
-.+..+.+.+++.++.++..|++++.++... .+. ..+++.+.++|.+++ +.+|..|+.++.++...+++...
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence 3677888899999999999999999997531 222 356788999999988 99999999999999986665432
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc--------------CCchHHH
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE--------------HTELSML 394 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~--------------~~~~~v~ 394 (684)
+.++.+..+|.+.++.|+..|+++|+.++..++.....+ ...++.++..|.+ ..++-.+
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 678888899999999999999999999987654321111 2457777777643 2467778
Q ss_pred HHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc------CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHH
Q 035507 395 RIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH------SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVE 468 (684)
Q Consensus 395 ~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~------~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~ 468 (684)
..++.+|..++...+ .......+.|..++. +.+..+...+++++..+. . .+... ..++..|..
T Consensus 252 ~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~-~-~~~l~-----~~a~~~L~~ 320 (618)
T 1w63_A 252 VRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK-S-ESGLR-----VLAINILGR 320 (618)
T ss_dssp HHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC-C-CHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC-C-CHHHH-----HHHHHHHHH
Confidence 888999999987642 222345555555543 345689999999999987 3 22211 245678888
Q ss_pred hcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCH
Q 035507 469 LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLI 548 (684)
Q Consensus 469 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l 548 (684)
++.++++.++..|+.+|+.++...+... ....+.++..+.++ +..+|+.|..++..++.... +.. ++
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv 387 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MM 387 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HH
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HH
Confidence 8999999999999999999997654322 13567888889888 99999999999999987431 222 45
Q ss_pred HHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507 549 GPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 549 ~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~ 620 (684)
+.|...+.+.+.+++..++.+++.++....+.... +++.|.+++......+...+...+..++...
T Consensus 388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~ 453 (618)
T 1w63_A 388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNS 453 (618)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcC
Confidence 77888888899999999999999999753222222 2566666666554444444555555555543
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.49 E-value=8.6e-13 Score=143.16 Aligned_cols=390 Identities=12% Similarity=0.083 Sum_probs=268.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
+..++..+.+.|.++|..|...|.++...+ ..+.+..|+.++.+++ ++.+|..|+..|.++..........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence 456677778899999999999998854210 1345677888887652 4899999999999998643211110
Q ss_pred -----------HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC-chHHHHHH
Q 035507 330 -----------VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT-ELSMLRIA 397 (684)
Q Consensus 330 -----------i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~-~~~v~~~a 397 (684)
-....+-..++..|.++++.+ ..++.+++.++..... .. .-.+.++.++..+.+.. +..++..+
T Consensus 75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~-~~--~w~~ll~~L~~~l~~~~~~~~~r~~a 150 (462)
T 1ibr_B 75 QYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIP-VN--QWPELIPQLVANVTNPNSTEHMKEST 150 (462)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGG-GT--CCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcc-cc--ccHHHHHHHHHHhccCCCCHHHHHHH
Confidence 001123455777888877788 8999999999854311 00 01246788888884432 88899999
Q ss_pred HHHHHHhccCC-CCCChhhhhchHHHHHHHhcCC--cHHHHHHHHHHHHhhccCCChHHHH-HHHHhchHHHHHHhcCCC
Q 035507 398 TTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSN--DEQVLTDACWALFGLSGDRNNDKIQ-AVIEAGVCGRLVELLGHP 473 (684)
Q Consensus 398 ~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~al~~L~~L~~~~~~~~~~-~~~~~g~l~~L~~lL~~~ 473 (684)
+.+|..++... +.........+++.+...+.+. ++.++..|+++++++. ..-.+... .....-+++.+...+.++
T Consensus 151 l~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~ 229 (462)
T 1ibr_B 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL-EFTKANFDKESERHFIMQVVCEATQCP 229 (462)
T ss_dssp HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT-TTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 99999999753 2222334467888899999887 7999999999999877 43222211 011122467777788888
Q ss_pred CcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCCh-----------------
Q 035507 474 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR----------------- 536 (684)
Q Consensus 474 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----------------- 536 (684)
++.++..+++++..++...+......+..++++.++..+.+. ++.++..|++.+..++....
T Consensus 230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE 308 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcc
Confidence 999999999999999876654332222226777888888887 89999999999998875310
Q ss_pred ----HHHHHHHHhCCHHHHHHHhccC-------CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHH
Q 035507 537 ----EQIQAVIDAGLIGPLVNLLQNA-------EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKI 605 (684)
Q Consensus 537 ----~~~~~l~~~g~l~~Li~ll~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v 605 (684)
....... ..++|.++..+... +..++..|+.++..++........ ..+++.+...+.+.++.+
T Consensus 309 ~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~~~ 382 (462)
T 1ibr_B 309 HTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDWRY 382 (462)
T ss_dssp CCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSHHH
T ss_pred chhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCChHH
Confidence 0111111 34678888877532 457899999999999874432222 235677888889999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 035507 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWC 673 (684)
Q Consensus 606 ~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~ 673 (684)
+..++.++..+........ +...+ ...+..|..+..++++.|+..|...+.++..
T Consensus 383 r~aal~~l~~l~~~~~~~~-----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPEPSQ-----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHHTSSSSCTTT-----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHH-----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999987432110 00111 3456778888888999999999999988853
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.48 E-value=2.6e-12 Score=151.29 Aligned_cols=361 Identities=16% Similarity=0.184 Sum_probs=247.4
Q ss_pred ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCch
Q 035507 249 EILPMMVAGVWSD--DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-YPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 249 ~~l~~lv~~L~s~--~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~ 325 (684)
+.++.+++.+.++ ++.++..|+.++..++....+..-.-.-..+++.+.+.+.+++ ++.+|..|++++.+++..-..
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999988 9999999999999987643211100011346777888887762 379999999999998863221
Q ss_pred hH-HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507 326 NT-KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404 (684)
Q Consensus 326 ~~-~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL 404 (684)
.. .......+++.+...+.+++..++..++.+|..++...+..-........++.++..+ .+.+..++..+++++..+
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence 11 0111112577777788888999999999999999865543211112224566666666 567788999999999888
Q ss_pred ccCC-------------------CCCCh--hhhhchHHHHHHHhcC-------CcHHHHHHHHHHHHhhccCCChHHHHH
Q 035507 405 CRGK-------------------PRPLF--DQVRPALPALAQLIHS-------NDEQVLTDACWALFGLSGDRNNDKIQA 456 (684)
Q Consensus 405 ~~~~-------------------~~~~~--~~~~~~l~~L~~lL~~-------~d~~v~~~al~~L~~L~~~~~~~~~~~ 456 (684)
+... +.... .....++|.++..+.. ++..++..+..++..++ ....+ .
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~-~~~~~---~ 362 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA-TCCED---D 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHH-HHHGG---G
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHH-HHCcH---h
Confidence 7541 11111 1235677888887752 35678889999998888 32221 1
Q ss_pred HHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh-hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC
Q 035507 457 VIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN 535 (684)
Q Consensus 457 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 535 (684)
++ ..+++.+...+.++++.+|..|+++++.++.+.. ......+ ..++|.++..+.++ ++.+|..|+|++++++...
T Consensus 363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~ 439 (876)
T 1qgr_A 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhC
Confidence 12 2467778888889999999999999999998765 3333322 35889999999888 8999999999999998743
Q ss_pred hHHH--HHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC--------------HHHHHHHHHCCChHHHHhhcc
Q 035507 536 REQI--QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT--------------HDQIKYLVTEGCIKPLCDLLQ 599 (684)
Q Consensus 536 ~~~~--~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~--------------~~~~~~l~~~g~l~~L~~lL~ 599 (684)
+... ...+ ..+++.++..+.+. +.++..|++++.+++.... .....++ ..+++.|...+.
T Consensus 440 ~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~ 515 (876)
T 1qgr_A 440 PEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTD 515 (876)
T ss_dssp GGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTT
T ss_pred chhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHh
Confidence 3211 1111 24678888888774 8999999999999985311 0011121 235677777776
Q ss_pred CC---ChHHHHHHHHHHHHHHhccc
Q 035507 600 CA---DPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 600 ~~---~~~v~~~al~~L~~il~~~~ 621 (684)
.. +..++..+++++..+.....
T Consensus 516 ~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 516 RPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp SCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred CcCcchhhHHHHHHHHHHHHHHHCc
Confidence 54 35788889999999988754
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.43 E-value=2e-11 Score=148.89 Aligned_cols=406 Identities=12% Similarity=0.108 Sum_probs=268.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.++.++..+.+.|.+++..|+..|.+.+.......+.-....+++.+++.|.+++ +.+|..|+.+|..++...+.. .
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--~ 83 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--Q 83 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--H
Confidence 5688999999999999999999999877554311111122346788999998776 899999999999999754441 1
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc-----hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR-----DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r-----~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL 404 (684)
+ ..+++.++..+.++++.+|..|+.+|+.++....... ..-.-...++.++..+.++.+..++..++.++..+
T Consensus 84 ~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1 2357888888888889999999999999985443210 00112245777888885457788999999999999
Q ss_pred ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-CcccHhHHHH
Q 035507 405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-SPSVLTPALW 483 (684)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~ 483 (684)
+...+..-......+++.+...+.++++.++..|+.+++.++ ....+. + -..+++.++..+.+. +..++..++.
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~-~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV-MSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT-TTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHH
Confidence 864332222345778888888999999999999999999999 543322 1 224677777777544 3578889999
Q ss_pred HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc------
Q 035507 484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN------ 557 (684)
Q Consensus 484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~------ 557 (684)
+++.++...+...... -..++|.++..+.+. ++.+|..|.+++..++...++.....+ ..++|.+++.+..
T Consensus 237 ~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~ 313 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNY 313 (1230)
T ss_dssp HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----
T ss_pred HHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCC
Confidence 9999987554322111 136789999999887 889999999999999874333222222 2245555444321
Q ss_pred -------------------------------CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHH
Q 035507 558 -------------------------------AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIV 606 (684)
Q Consensus 558 -------------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~ 606 (684)
...++|..|+.++..++.........+ -..+++.+...+.+.++.++
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~Vr 391 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRFKEREENVK 391 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHHHSTTSCSSSHHH
T ss_pred cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHcCCCchHHH
Confidence 123578899999999887433212222 24578888888888899999
Q ss_pred HHHHHHHHHHHhccccccc-CCCC-----Ccch-hHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507 607 TVCLEGLENILKVGEAEKN-TDSD-----IGDI-NQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 607 ~~al~~L~~il~~~~~~~~-~~~~-----~~~~-~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f 672 (684)
..++.++..++........ ..+. ..+. ......+ ...++.+.....++++.++..+...+..+.
T Consensus 392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~ 462 (1230)
T 1u6g_C 392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELV 462 (1230)
T ss_dssp HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 9999999988874321000 0000 0000 0001111 123445555566777777777666665543
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.39 E-value=1.4e-11 Score=138.42 Aligned_cols=324 Identities=15% Similarity=0.119 Sum_probs=237.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
....+++.+.+++.+.+.-+..++..++..++ +.++ -+++.|.+-|.+++ +.+|..|+++|+++.. ++.
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~---e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~--- 139 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQ---DVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEM--- 139 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH---HHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHH---
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCc---HHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHH---
Confidence 56788889999999998888888888776542 1111 24677888888887 8999999999999985 322
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
. ...++.+..+|.++++.||..|+.+++++....|+... +.++.+..++ .+.++.++..|+++|..++...+
T Consensus 140 -~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 140 -C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp -H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHH
T ss_pred -H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhCh
Confidence 2 24578889999999999999999999999976654221 3455555666 67889999999999999987643
Q ss_pred CCChhhhhchHHHHHHHhcC---------------CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC---
Q 035507 410 RPLFDQVRPALPALAQLIHS---------------NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG--- 471 (684)
Q Consensus 410 ~~~~~~~~~~l~~L~~lL~~---------------~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~--- 471 (684)
.. .......+|.++.+|.. .++..+..++.+++.++ ..+++..+ .+.+.|..++.
T Consensus 212 ~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~-~~~~~~~~-----~~~~~L~~l~~~~~ 284 (618)
T 1w63_A 212 DM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILG-RNDDDSSE-----AMNDILAQVATNTE 284 (618)
T ss_dssp HH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHT-TTCHHHHH-----TTHHHHHHHHHTSC
T ss_pred HH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhC-CCCHHHHH-----HHHHHHHHHHhccc
Confidence 21 22345677777776652 48999999999999999 65544322 34444555442
Q ss_pred ---CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCH
Q 035507 472 ---HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLI 548 (684)
Q Consensus 472 ---~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l 548 (684)
+.+..+...|++++..+.. .+.... .+++.|..++.++ ++.+|..|..+|+.++...+..+ ....
T Consensus 285 ~~~~~~~aV~~ea~~~i~~l~~-~~~l~~-----~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~-----~~~~ 352 (618)
T 1w63_A 285 TSKNVGNAILYETVLTIMDIKS-ESGLRV-----LAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAV-----QRHR 352 (618)
T ss_dssp CSSTHHHHHHHHHHHHHHHSCC-CHHHHH-----HHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHH-----GGGH
T ss_pred cccchHHHHHHHHHHHHHhcCC-CHHHHH-----HHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHH-----HHHH
Confidence 2345788889999988743 221111 3567888889888 89999999999999987544322 2356
Q ss_pred HHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 549 GPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 549 ~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
+.++..+.+.+..+|..|+.++..++...+.+. +++.|..++.+.+++++..+..++..+...
T Consensus 353 ~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~--------iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 353 STIVDCLKDLDVSIKRRAMELSFALVNGNNIRG--------MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHH--------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHcccccHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999987544221 345666777777888888888888877764
No 58
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.38 E-value=2.1e-11 Score=117.35 Aligned_cols=187 Identities=21% Similarity=0.239 Sum_probs=159.0
Q ss_pred cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCC
Q 035507 333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL 412 (684)
Q Consensus 333 ~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~ 412 (684)
.+.++.|+..|.++++.+|..|+++|+.+.. ...++.|+..+ .+++..++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 4679999999999999999999999999743 24578899988 57789999999999999863
Q ss_pred hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507 413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD 492 (684)
Q Consensus 413 ~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 492 (684)
...++.+..++.++++.++..++++|+.+. . .+.++.|..++.++++.++..|+++|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIG-D-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-c-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 367899999999999999999999999987 3 2468899999999999999999999999842
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHH
Q 035507 493 DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN 572 (684)
Q Consensus 493 ~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~n 572 (684)
+ ..++.|..++.++ ++.+|..|+++|+.+.. ...++.|..++.++++.+|..|..+|.+
T Consensus 142 ~---------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 E---------RAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp G---------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred H---------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2 3678899999888 99999999999999943 2367888899999999999999999999
Q ss_pred hhcC
Q 035507 573 ASSR 576 (684)
Q Consensus 573 l~~~ 576 (684)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 8764
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.38 E-value=1.6e-11 Score=118.20 Aligned_cols=187 Identities=21% Similarity=0.195 Sum_probs=158.8
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc
Q 035507 290 SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369 (684)
Q Consensus 290 ~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r 369 (684)
.+.++.|+++|.+++ +.+|..|+++|..+.. .++++.|+.+|.++++.++..|+++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 457899999999887 9999999999998765 3678999999999999999999999999842
Q ss_pred hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC
Q 035507 370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR 449 (684)
Q Consensus 370 ~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~ 449 (684)
.+.++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+. .
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG-D- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-C-
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C-
Confidence 23578888888 77889999999999999854 357899999999999999999999999987 3
Q ss_pred ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507 450 NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS 529 (684)
Q Consensus 450 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 529 (684)
...++.|..++.++++.++..|+.+|+.+.. + .+++.|..++.++ ++.+|..|..+|.
T Consensus 142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLE 199 (211)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 2468899999999999999999999999842 1 3567888999888 9999999999999
Q ss_pred HHhcC
Q 035507 530 NIACG 534 (684)
Q Consensus 530 nl~~~ 534 (684)
++...
T Consensus 200 ~~~~~ 204 (211)
T 3ltm_A 200 THKSF 204 (211)
T ss_dssp C----
T ss_pred hcCCC
Confidence 99764
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.36 E-value=4.1e-11 Score=114.25 Aligned_cols=184 Identities=22% Similarity=0.213 Sum_probs=158.5
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507 291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370 (684)
Q Consensus 291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~ 370 (684)
+..+.++++|++++ +.+|..|+++|..+.. .+.++.|+.+|.++++.++..|+++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 45789999999998 9999999999998765 2568999999999999999999999999842
Q ss_pred hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC
Q 035507 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN 450 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~ 450 (684)
...++.|+..+ .++++.++..++++|..+.. ...++.+..++.++++.++..++++|+.+. .
T Consensus 75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~-- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG-D-- 136 (201)
T ss_dssp ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-C--
T ss_pred ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-C--
Confidence 13578888888 67889999999999999854 357899999999999999999999999987 3
Q ss_pred hHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507 451 NDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN 530 (684)
Q Consensus 451 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 530 (684)
.+.++.|..++.++++.++..|+++|+.+. .+ ..++.|..++.++ ++.+|..|..+|.+
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLET 195 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 357889999999999999999999999983 22 2577888899888 99999999999998
Q ss_pred Hh
Q 035507 531 IA 532 (684)
Q Consensus 531 l~ 532 (684)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 74
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.36 E-value=1.9e-11 Score=149.04 Aligned_cols=396 Identities=12% Similarity=0.135 Sum_probs=260.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc-----HHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcC
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-----IEEVIESGVVPRFVEFLMR-EDYPQLQFQAAWALTNIASG 322 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~-----~~~ii~~g~i~~Lv~lL~~-~~~~~v~~~A~~~L~~l~~~ 322 (684)
..++.+...+.++++.+|..|+.++..++....+. ...-....++|.|.+.+.+ ++ +.++..|+.+|..++..
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHH
Confidence 35778888888888889999999999887654432 1112234578999999984 55 89999999999999852
Q ss_pred CchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507 323 TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS 402 (684)
Q Consensus 323 ~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~ 402 (684)
....... .-...++.|+..+.++++.+|..|+.+|+.++...+. .+ -...++.++..+....+..++..++.+++
T Consensus 165 ~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 165 QGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp TCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred hHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 2111100 0123567788888888999999999999999965533 11 12357888888865544566777888888
Q ss_pred HhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC----------
Q 035507 403 NLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH---------- 472 (684)
Q Consensus 403 nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~---------- 472 (684)
.++...+..-......++|.+...+.+++++++..++.++..++ ........... ..+++.++..+..
T Consensus 240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~-~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~ 317 (1230)
T 1u6g_C 240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV-RRCPKEVYPHV-STIINICLKYLTYDPNYNYDDED 317 (1230)
T ss_dssp HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHH-HCTTCCCHHHH-HHHHHHHTTCCCCC---------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccc
Confidence 88876543222345789999999999999999999999999888 43322212122 2355666555531
Q ss_pred ---------------------------CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHH
Q 035507 473 ---------------------------PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVS 525 (684)
Q Consensus 473 ---------------------------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~ 525 (684)
..+.+|..|+.++..++...+......+ ..++|.++..+.+. +..+|..|+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~ 395 (1230)
T 1u6g_C 318 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVF 395 (1230)
T ss_dssp ---------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHH
T ss_pred cccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHH
Confidence 1134688899999999875543333333 36788888888777 889999999
Q ss_pred HHHHHHhcC--C-----------------hHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 035507 526 WIISNIACG--N-----------------REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLV 586 (684)
Q Consensus 526 ~~L~nl~~~--~-----------------~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 586 (684)
.++..+... . .......+ ..+++.+...+.+.++.+|..++.+++.++.........++
T Consensus 396 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l- 473 (1230)
T 1u6g_C 396 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI- 473 (1230)
T ss_dssp HHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH-
T ss_pred HHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH-
Confidence 988877641 1 11122222 23677777779989999999999999998864321111111
Q ss_pred HCCChHHHHhhccCCCh--HHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 035507 587 TEGCIKPLCDLLQCADP--KIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKS 664 (684)
Q Consensus 587 ~~g~l~~L~~lL~~~~~--~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a 664 (684)
..+++.+...+.+..+ .++..++..+..++....... +...+ ...+..+.....+++..|...|
T Consensus 474 -~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~-----------~~~~l--~~llp~L~~~l~d~~~~v~~~a 539 (1230)
T 1u6g_C 474 -PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV-----------FHPHV--QALVPPVVACVGDPFYKITSEA 539 (1230)
T ss_dssp -HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG-----------GHHHH--TTTHHHHHHHHTCSSHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH-----------HHhHH--HHHHHHHHHHHcccchHHHHHH
Confidence 2357788888887654 888888888888876432210 11222 1234555545555666665555
Q ss_pred HHHHHH
Q 035507 665 VKILET 670 (684)
Q Consensus 665 ~~ii~~ 670 (684)
...+..
T Consensus 540 l~~l~~ 545 (1230)
T 1u6g_C 540 LLVTQQ 545 (1230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.35 E-value=4.6e-11 Score=113.93 Aligned_cols=184 Identities=21% Similarity=0.243 Sum_probs=158.7
Q ss_pred CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCCh
Q 035507 334 DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLF 413 (684)
Q Consensus 334 g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~ 413 (684)
+..+.++++|.++++.+|..|+++|+.+.. ...++.|+..+ .+++..++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 457899999999999999999999999742 23578899999 67889999999999998853
Q ss_pred hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh
Q 035507 414 DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD 493 (684)
Q Consensus 414 ~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 493 (684)
...++.+..++.++++.++..++++|+.+. . ...++.|..++.++++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIG-D-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-c-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 257899999999999999999999999987 3 2468889999999999999999999999853
Q ss_pred hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507 494 FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA 573 (684)
Q Consensus 494 ~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl 573 (684)
...++.|..++.++ ++.+|..|+++|+.+.. + ..++.|..++.++++.++..|..+|..+
T Consensus 137 --------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 24788899999988 99999999999999932 1 2578888899999999999999999987
Q ss_pred h
Q 035507 574 S 574 (684)
Q Consensus 574 ~ 574 (684)
-
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.17 E-value=1.3e-08 Score=113.93 Aligned_cols=331 Identities=15% Similarity=0.108 Sum_probs=231.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
....+++.+.+++...+..+..++..++..+++... =+++.+.+=+.+++ +.++..|+.+|+++.. ++...
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~-----L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~- 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIR-----LINNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE- 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHH-----HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH-
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHH-----HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH-
Confidence 567889999999999999998888887655432111 13567777778887 9999999999999975 44222
Q ss_pred HHhcCChHHHHHhc--CCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 330 VIEHDAVPIFVKLL--ASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 330 i~~~g~i~~Li~lL--~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
..++.+.+++ .+.++.||..|+.++.++....|+ .+...+.++.+..+| .+.++.++.+|+.++..++..
T Consensus 146 ----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 146 ----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp ----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHh
Confidence 4578888898 889999999999999999976554 222346788888888 788999999999999999876
Q ss_pred CCCCChhhhhchHHHHHHHhcCC-------------cHHHHHHHHHHHHhhccCC-ChHHHHHHHHhchHHHHHHhcC--
Q 035507 408 KPRPLFDQVRPALPALAQLIHSN-------------DEQVLTDACWALFGLSGDR-NNDKIQAVIEAGVCGRLVELLG-- 471 (684)
Q Consensus 408 ~~~~~~~~~~~~l~~L~~lL~~~-------------d~~v~~~al~~L~~L~~~~-~~~~~~~~~~~g~l~~L~~lL~-- 471 (684)
.+..-.......+..+.+++..+ ++..+..++..+..++ .. +++....+.+ +++.++..+.
T Consensus 218 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~-~~~d~~~~~~l~~--~L~~il~~~~~~ 294 (621)
T 2vgl_A 218 NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP-PPEDPAVRGRLTE--CLETILNKAQEP 294 (621)
T ss_dssp CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS-SCSSHHHHHHHHH--HHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC-CCCCHHHHHHHHH--HHHHHHHhhccC
Confidence 53211112233333344444322 6889999999999998 53 3343333332 3444443321
Q ss_pred -------CCCc--ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507 472 -------HPSP--SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV 542 (684)
Q Consensus 472 -------~~~~--~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 542 (684)
+.+. .+...|++++..+.. .++... .++..|..++.++ ++.+|..|..++..++...+. .. .
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~~-~ 365 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-HE-A 365 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-HH-H
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-HH-H
Confidence 1122 677788888887752 222222 3566788888877 899999999999999875432 11 2
Q ss_pred HHhCCHHHHHHHhc-cCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507 543 IDAGLIGPLVNLLQ-NAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK 618 (684)
Q Consensus 543 ~~~g~l~~Li~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~ 618 (684)
+ ....+.++..+. +.|..++..|+..+..++. +..... ++..|..++...|.+++..++..+..+..
T Consensus 366 ~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 366 V-KTHIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 2 236778888888 8899999999999999975 444444 45566677777788877777777766654
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.15 E-value=1.6e-09 Score=121.17 Aligned_cols=329 Identities=12% Similarity=0.122 Sum_probs=221.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFL--MREDYPQLQFQAAWALTNIASGTSENT 327 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~~v~~~A~~~L~~l~~~~~~~~ 327 (684)
.+..+.+.++++|+.++-.|+.++.++.. ..++ ..+++.+.+++ .+.+ +.+|..|+.++.++...+++..
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~------~e~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~~ 183 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS------REMA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDLV 183 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC------HHHH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC------HHHH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhhc
Confidence 56778888899999999999999999743 1233 24678888998 7777 9999999999999998655433
Q ss_pred HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc----c--CC----------ch
Q 035507 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN----E--HT----------EL 391 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~----~--~~----------~~ 391 (684)
. ..+.++.+..+|.++++.|+..|+.++..++...+. .. ...++.++..|. . .+ ++
T Consensus 184 ~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~---~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~ 255 (621)
T 2vgl_A 184 P---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE---EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP 255 (621)
T ss_dssp C---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH---HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESH
T ss_pred C---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH---HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCc
Confidence 2 247899999999999999999999999999876543 11 123444444332 1 11 45
Q ss_pred HHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHh---------cCCc--HHHHHHHHHHHHhhccCCChHHHHHHHHh
Q 035507 392 SMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI---------HSND--EQVLTDACWALFGLSGDRNNDKIQAVIEA 460 (684)
Q Consensus 392 ~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL---------~~~d--~~v~~~al~~L~~L~~~~~~~~~~~~~~~ 460 (684)
-.+..++..+..++..............++.++..+ ++.+ ..+...++.++.++. ..++...
T Consensus 256 w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~----- 328 (621)
T 2vgl_A 256 WLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLV----- 328 (621)
T ss_dssp HHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHH-----
T ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC--CcHHHHH-----
Confidence 667777777777764321111111223333333322 1223 388889999999887 3333222
Q ss_pred chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc-cCCChhHHHHHHHHHHHHhcCChHHH
Q 035507 461 GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI-HNHKNSIKKEVSWIISNIACGNREQI 539 (684)
Q Consensus 461 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~ 539 (684)
.++..|..++.++++.++..|+.++..++...+. ...+ ....+.++..+. ++ +..+|..|..++..++. +.++
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv 402 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA 402 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence 3567788999889999999999999999876642 1222 246778888888 77 89999999999999974 3444
Q ss_pred HHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK 618 (684)
Q Consensus 540 ~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~ 618 (684)
.. ++..|...+...+.+++..++.+++.++....+... -+++.|.+++......+...+...+..++.
T Consensus 403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~------~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~ 470 (621)
T 2vgl_A 403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT------WYVDTILNLIRIAGDYVSEEVWYRVIQIVI 470 (621)
T ss_dssp HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH------HHHHHHHHHHHHHGGGSCSHHHHHHHHHHG
T ss_pred HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 43 566778888888999999999999998752111111 135566666654333333344444444443
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.99 E-value=4.3e-09 Score=119.32 Aligned_cols=217 Identities=15% Similarity=0.090 Sum_probs=157.4
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH-HhcCCCChHHHHHHHHHHHHhhCCC-CC
Q 035507 290 SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFV-KLLASPSDDVREQAVWALGNVAADS-SG 367 (684)
Q Consensus 290 ~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li-~lL~~~~~~v~~~a~~~L~nLa~~~-~~ 367 (684)
..++| +++.|++++ +..|..|+++|++|+. ++..+..+...|++..++ .+|.+++.+||+.|+++|.||+.+. +.
T Consensus 34 ~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 34555 567788888 8999999999999997 888999999999887765 5788899999999999999999653 45
Q ss_pred CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 035507 368 CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSG 447 (684)
Q Consensus 368 ~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~ 447 (684)
.++.+...|++++|...+.+ ....+........... ......+ .++...++.+|.+++
T Consensus 111 ~~~~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~- 168 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLA- 168 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHcChHHHHHHHHHh---------hHHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHH-
Confidence 67778889999999988832 1222222221110000 0001111 234566778888888
Q ss_pred CCChHHHHHHHHhchHHHHHHhcCCC---CcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh--ccCCChhHHH
Q 035507 448 DRNNDKIQAVIEAGVCGRLVELLGHP---SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL--IHNHKNSIKK 522 (684)
Q Consensus 448 ~~~~~~~~~~~~~g~l~~L~~lL~~~---~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL--~~~~~~~v~~ 522 (684)
..+++....+...+.++.|+..|.+. ...++..|+.+|..++..++...+.+.+.+....+..++ ... +...+.
T Consensus 169 e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~ 247 (684)
T 4gmo_A 169 LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAV 247 (684)
T ss_dssp HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHH
T ss_pred hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHH
Confidence 77788888888889999999988442 356899999999999999998888888877544333332 233 345678
Q ss_pred HHHHHHHHHh
Q 035507 523 EVSWIISNIA 532 (684)
Q Consensus 523 ~a~~~L~nl~ 532 (684)
.+++++.|+.
T Consensus 248 la~giL~Ni~ 257 (684)
T 4gmo_A 248 MACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhHh
Confidence 8999999984
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.99 E-value=4.5e-08 Score=110.76 Aligned_cols=307 Identities=13% Similarity=0.117 Sum_probs=211.9
Q ss_pred cHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHHH
Q 035507 250 ILPMMVAGVW---SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-------YPQLQFQAAWALTNI 319 (684)
Q Consensus 250 ~l~~lv~~L~---s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-------~~~v~~~A~~~L~~l 319 (684)
.+..+-+.|. ++++.++-.|+.++.-+-.+.. .. ++..|...|.+++ .+.++..|+-.|+.+
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~---~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG---RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT---HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc---HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 4566666676 6678888889988887665543 11 4567777776543 367898999999998
Q ss_pred hcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHH
Q 035507 320 ASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATT 399 (684)
Q Consensus 320 ~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~ 399 (684)
..|+.. ..+++.|..++.+++..+++.|+.+||-+-..... ..++..|+..+..+.+..+++.++.
T Consensus 465 ~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~aal 530 (963)
T 4ady_A 465 AMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGLAV 530 (963)
T ss_dssp STTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 765431 13467788888877777888999999987533322 1246778887767778899999999
Q ss_pred HHHHhccCCCCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHH--hhccCCChHHHHHHHHhchHHHHHHh-cCCCCc
Q 035507 400 TLSNLCRGKPRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALF--GLSGDRNNDKIQAVIEAGVCGRLVEL-LGHPSP 475 (684)
Q Consensus 400 ~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~--~L~~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~ 475 (684)
+|+.+..+. ...++.+++.|. +.++-++..++.+++ +.. .++... ++.|++. ..+.+.
T Consensus 531 gLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaG-TGn~~a---------Iq~LL~~~~~d~~d 592 (963)
T 4ady_A 531 GLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAG-TGNNSA---------VKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-SCCHHH---------HHHHHHHHHHCSCH
T ss_pred HHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCCHHH---------HHHHHHHhccCCcH
Confidence 999887665 245666666665 578888888877775 444 455443 3333333 346677
Q ss_pred ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh
Q 035507 476 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL 555 (684)
Q Consensus 476 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll 555 (684)
.+|..|+.+|+.+..+.++ .++.++.+|.+..++.+|..|+++|+.++++++.. .++..|..+.
T Consensus 593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~ 656 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence 8999999999999877752 45666665544449999999999999999876531 2567788888
Q ss_pred ccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc--CCChHHHHHHHHHHH
Q 035507 556 QNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ--CADPKIVTVCLEGLE 614 (684)
Q Consensus 556 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~--~~~~~v~~~al~~L~ 614 (684)
.+.+..|+..|+.+++.+..+.+.....++. +.+..|..... +.|+..+..+.-+..
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva--~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQTEKLNPQVA--DINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHH--HHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCccccchHHH--HHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 8999999999999999998765433111111 12344555554 345555555555554
No 67
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.92 E-value=9.4e-08 Score=84.62 Aligned_cols=217 Identities=14% Similarity=0.166 Sum_probs=172.0
Q ss_pred hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC
Q 035507 332 EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP 411 (684)
Q Consensus 332 ~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~ 411 (684)
+..++..++.+|.+.-+.|+.+|+..+.+++..-|+..+- .+..|+.++..+...........+++.++...|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 4467899999999999999999999999999877664332 356777777788888887888889999987753
Q ss_pred ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC
Q 035507 412 LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG 491 (684)
Q Consensus 412 ~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 491 (684)
..+.+.+|.+..-..-+|+.++.+...+|..+. ..+++... +++.-+..++.+++..-+..|+..++.+...
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIa-ranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIA-KANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHH-HHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHH-HhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 456788888888888899999999999999999 66655443 5667789999988876677777777766544
Q ss_pred ChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHH
Q 035507 492 DDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAIS 571 (684)
Q Consensus 492 ~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~ 571 (684)
. .+++. ..+|.|..+|.+. +.-||..|..+|.+++..++..+..+ ..-++-+.+.+..+++....+|+
T Consensus 175 ~---~~yv~--PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 175 S---FKYVN--PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp T---HHHHG--GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHH
T ss_pred C---ccccC--cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHH
Confidence 4 34333 5899999999999 99999999999999999887754432 33356677788889998889988
Q ss_pred Hhhc
Q 035507 572 NASS 575 (684)
Q Consensus 572 nl~~ 575 (684)
.++.
T Consensus 243 rl~l 246 (253)
T 2db0_A 243 RLLL 246 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.88 E-value=9.8e-08 Score=88.47 Aligned_cols=226 Identities=18% Similarity=0.160 Sum_probs=173.3
Q ss_pred hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhH
Q 035507 417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT 496 (684)
Q Consensus 417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 496 (684)
...+..+..+++..|+.++.+++.++..+. ...++......-..+++.++.++.+.+..+...|++++..+..+.+-.-
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~Leell-K~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEIL-KRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHH-HhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 457888999999999999999999999999 5444444444445789999999999999999999999999998776333
Q ss_pred HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcC
Q 035507 497 QCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR 576 (684)
Q Consensus 497 ~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~ 576 (684)
..... +...+..++.++ ++-++.+|+-.++-+--.++ ..+++..+..++.+.+..++..|..++.+++..
T Consensus 111 ~~y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLED-------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 32322 567888888877 99999999999999832221 123567888889889999999999999999874
Q ss_pred C-CHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhh-c
Q 035507 577 G-THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQ-S 654 (684)
Q Consensus 577 ~-~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~-~ 654 (684)
. +++. -.+++.-+-+++++.|+.++..+++++..++..--.. |.. ..-.+......+|. -
T Consensus 181 S~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~----------~~~---~~~~~~~~~v~~l~~~ 242 (265)
T 3b2a_A 181 SADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE----------NVK---IELLKISRIVDGLVYR 242 (265)
T ss_dssp CSSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS----------CCH---HHHHHHHHHHHHGGGC
T ss_pred cCCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH----------hHH---HHHHHHHHHHHHHHHh
Confidence 3 2222 2347778889999999999999999999999873221 111 12234556677787 6
Q ss_pred CCCHHHHHHHHHHHHHh
Q 035507 655 HDNNEIHEKSVKILETY 671 (684)
Q Consensus 655 ~~~~~i~~~a~~ii~~~ 671 (684)
...|.++.+|..+.+..
T Consensus 243 ~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 243 EGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHH
Confidence 78899999998877653
No 69
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.78 E-value=1.9e-08 Score=113.96 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=152.6
Q ss_pred CHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHH-HHHHhcCCcHHHHHHHHHHHHhhccCCChHHHH
Q 035507 377 ALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPA-LAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQ 455 (684)
Q Consensus 377 ~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~-L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~ 455 (684)
.+.|+++.| ++++...+..|+++|++|+.+..........++++. +..++.+++.+|+..|+++|.||+.....+...
T Consensus 35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 467888888 788999999999999999976443444445667665 567889999999999999999999445567888
Q ss_pred HHHHhchHHHHHHhcCCCC---------------------cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc
Q 035507 456 AVIEAGVCGRLVELLGHPS---------------------PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 514 (684)
Q Consensus 456 ~~~~~g~l~~L~~lL~~~~---------------------~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~ 514 (684)
.+++.|+++.|..++.... ..+...++.+|.+++.+++.....+...+.++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8999999999998874310 1234567889999999888888888889999999999854
Q ss_pred CC--ChhHHHHHHHHHHHHhcCChHHHHHHHHhCC---HHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507 515 NH--KNSIKKEVSWIISNIACGNREQIQAVIDAGL---IGPLVNLLQNAEFDIKEEAAWAISNAS 574 (684)
Q Consensus 515 ~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~---l~~Li~ll~~~~~~v~~~a~~aL~nl~ 574 (684)
.. ..+++..|+.+|.+++..+++.++.+.+.+. +..+..+ ...+...+..+++.+.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 31 4679999999999999999999988887664 3333333 3344455778889998875
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.73 E-value=3.2e-07 Score=93.70 Aligned_cols=301 Identities=16% Similarity=0.097 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC
Q 035507 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH 388 (684)
Q Consensus 309 ~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~ 388 (684)
+.....+|.-+..|.+-....+ ..+...+++++.+++..+++.+...+.+++...+. .++ ++..+.+-+ ++
T Consensus 45 ~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl~kDl-~~ 115 (355)
T 3tjz_B 45 AHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VII---VTSSLTKDM-TG 115 (355)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GGG---GHHHHHHHH-HS
T ss_pred HHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HHH---HHHHHHhhc-CC
Confidence 3344455555555432211111 13356678899999999999999999999877433 332 467788888 77
Q ss_pred CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHH
Q 035507 389 TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVE 468 (684)
Q Consensus 389 ~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~ 468 (684)
+++-++..|+.+++++.... ....+.+.+.+.+.+.++.|+..|+.+..++. ...++..+ +++..+-+
T Consensus 116 ~N~~iR~lALRtL~~I~~~~------m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~-~~~pe~v~-----~~~~~l~~ 183 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITDST------MLQAIERYMKQAIVDKVPSVSSSALVSSLHLL-KCSFDVVK-----RWVNEAQE 183 (355)
T ss_dssp SCHHHHHHHHHHHHHHCCTT------THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHT-TTCHHHHH-----TTHHHHHH
T ss_pred CcHhHHHHHHHHHhcCCCHH------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-ccCHHHHH-----HHHHHHHH
Confidence 88899999999999997663 45678888999999999999999999999999 76666543 68899999
Q ss_pred hcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCC--ChhHHHHHHHHHHHHhcCC-hHHHHHHHHh
Q 035507 469 LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH--KNSIKKEVSWIISNIACGN-REQIQAVIDA 545 (684)
Q Consensus 469 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~ 545 (684)
++.+.++.++..|+.++..+...+.. .+..++..+.... ++-.+-.....++.++..+ +. ...
T Consensus 184 ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~ 249 (355)
T 3tjz_B 184 AASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDS 249 (355)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------
T ss_pred HhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHH
Confidence 99999999999999999999875532 2233444443320 2333333333332333332 11 123
Q ss_pred CCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccccc
Q 035507 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKN 625 (684)
Q Consensus 546 g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~ 625 (684)
.+++.+...+++.++.|.-+|+.++..+.... ... -..++..|..++.++++.++..++..|..+....+.
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~--- 320 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-AKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS--- 320 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC------------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-HHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH---
Confidence 46677777788889999999999999985521 111 123567788888899999999999999988876433
Q ss_pred CCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHH
Q 035507 626 TDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKIL 668 (684)
Q Consensus 626 ~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii 668 (684)
.+.++. ..|+.+..++|..|...|...+
T Consensus 321 -------------~v~~~n--~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 321 -------------AVTACN--LDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp -------------------------------------------
T ss_pred -------------HHHHHH--HHHHHHccCCcHhHHHHHHHHh
Confidence 233222 3478888999999998887654
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.64 E-value=8.7e-07 Score=90.45 Aligned_cols=277 Identities=13% Similarity=0.047 Sum_probs=164.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK 328 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 328 (684)
.....+++.+.++|...+.-....+..++...+..+ =++..|.+=+++++ +-+|-.|+++|++|.. ++...
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~ 138 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ 138 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence 456788899999999999888888877665532222 25678888888888 8999999999999987 23222
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
...+.+.+.|.+.++.||..|+.+...+....|+ .+ .+.+..+-..+ .+.++.+..+|+.+|..++..+
T Consensus 139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 2356677888999999999999999999877755 22 25777777777 6778889999999999998763
Q ss_pred CCCChhhhhchHHHHHHHhcCC---cHHHHHHHHHHHHhhccCCC-hHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHH
Q 035507 409 PRPLFDQVRPALPALAQLIHSN---DEQVLTDACWALFGLSGDRN-NDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT 484 (684)
Q Consensus 409 ~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~al~~L~~L~~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 484 (684)
...+..++..+... ++..+...++.+..++ ..+ +. ....+++.+..+|++.++.|...|+++
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~-~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~ 273 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQL-EDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASA 273 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------------CCCCCSSHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhc-cccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 11334444444332 5666667777776666 333 11 223577889999999999999999999
Q ss_pred HHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHH
Q 035507 485 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKE 564 (684)
Q Consensus 485 L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~ 564 (684)
+..+...... .. ..++..+..++.++ ++.+|-.|...|..++...|..++. .-.-+.+++++++..+.-
T Consensus 274 I~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t 342 (355)
T 3tjz_B 274 IVNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIAT 342 (355)
T ss_dssp HTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------
T ss_pred HHhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence 9888652221 11 23566777778888 8999999999999998876655442 234556677777766554
Q ss_pred HHHHHH
Q 035507 565 EAAWAI 570 (684)
Q Consensus 565 ~a~~aL 570 (684)
-|..+|
T Consensus 343 ~Aittl 348 (355)
T 3tjz_B 343 LAITTL 348 (355)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 444333
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.61 E-value=4e-06 Score=74.34 Aligned_cols=216 Identities=14% Similarity=0.139 Sum_probs=164.9
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCCCC
Q 035507 289 ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 289 ~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
+..++..++.+|.++-+ .+|..|+.++..++..-++..... +..|+.+++ +....+......++|.++...|+
T Consensus 30 d~~~l~~lI~~LDDDlw-tV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDLW-TVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHHH-HHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 34578889999988774 899999999999999776655443 455666654 46666767888999999987765
Q ss_pred CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 035507 368 CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSG 447 (684)
Q Consensus 368 ~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~ 447 (684)
.. .+.++.+.... .-.++.++.+..++|..+.+..| ....+++.-+..++.++|..-+..|+..++.+.
T Consensus 104 ~v-----~~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG- 172 (253)
T 2db0_A 104 LV-----KSMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMG- 172 (253)
T ss_dssp HH-----HHHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC-
T ss_pred HH-----HhhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh-
Confidence 21 12355555555 44589999999999999998754 345677778888999999888888888888887
Q ss_pred CCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 035507 448 DRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWI 527 (684)
Q Consensus 448 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~ 527 (684)
.+..... ..++|+|..+|.+.+.-+|..|..+|++++..++..+.. +...++=+.+. +..+++..-.+
T Consensus 173 en~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~-S~lv~~~V~eg 240 (253)
T 2db0_A 173 ENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDT-SSLVNKTVKEG 240 (253)
T ss_dssp TTTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCS-CHHHHHHHHHH
T ss_pred ccCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCc-HHHHHHHHHHH
Confidence 5444332 257899999999999999999999999999999875543 33455556777 78888888888
Q ss_pred HHHHhc
Q 035507 528 ISNIAC 533 (684)
Q Consensus 528 L~nl~~ 533 (684)
|+.++.
T Consensus 241 L~rl~l 246 (253)
T 2db0_A 241 ISRLLL 246 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.60 E-value=2.3e-07 Score=90.85 Aligned_cols=186 Identities=12% Similarity=0.162 Sum_probs=142.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhh
Q 035507 337 PIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQV 416 (684)
Q Consensus 337 ~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~ 416 (684)
+.+.+.+.+.++..|..|+..|..++...+.....- ....++.+...+.++.+..++..++.++..++..-...-....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 457778889999999999999999986533211100 1124556666664478899999999999999976433333456
Q ss_pred hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC-hhh
Q 035507 417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD-DFQ 495 (684)
Q Consensus 417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~-~~~ 495 (684)
..++|.++..+.+.++.++..+..++..+. .... . ..+++.+...+++.++.++..++.+|+.+.... +..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~-~~~~--~-----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIY-ASTS--L-----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHH-TTSC--H-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HcCC--H-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 889999999999999999999999999998 4332 1 236788999999999999999999999976443 321
Q ss_pred -HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 496 -TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 496 -~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
....+. .++|.+..++.+. ++++|..|..+++.++.
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 122222 5889999999988 99999999999999875
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.56 E-value=8.3e-07 Score=86.89 Aligned_cols=185 Identities=15% Similarity=0.187 Sum_probs=141.7
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhccCCChHHHHHHH
Q 035507 380 PLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLSGDRNNDKIQAVI 458 (684)
Q Consensus 380 ~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~~~~~~~~~~~~ 458 (684)
.+...+ ++.+...++.++..|..++.+.+.........+++.+...+. +.+..++..++.+++.++ ..-........
T Consensus 19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la-~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLA-KGLAKRFSNYA 96 (242)
T ss_dssp THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH-HHHGGGGHHHH
T ss_pred HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HHHhhhHHHHH
Confidence 356666 678889999999999999876322111223577888999995 899999999999999999 33222222222
Q ss_pred HhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChH
Q 035507 459 EAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NRE 537 (684)
Q Consensus 459 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~ 537 (684)
..++|.++..+.+++..+|..|..++..++.... .. .+++.+...+.+. ++.+|..++..|+.+... .++
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 2478999999999999999999999999987543 11 2678889999988 999999999999997653 333
Q ss_pred H-HHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcC
Q 035507 538 Q-IQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR 576 (684)
Q Consensus 538 ~-~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~ 576 (684)
. ....+. .++|.|..++.+.+.++|..|..+++.++..
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 222233 4899999999999999999999999999863
No 75
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.56 E-value=1.4e-05 Score=90.55 Aligned_cols=272 Identities=13% Similarity=0.113 Sum_probs=187.4
Q ss_pred CHHHHHHhhc---CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCC--------hHHHHHHHHHHHH
Q 035507 292 VVPRFVEFLM---REDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPS--------DDVREQAVWALGN 360 (684)
Q Consensus 292 ~i~~Lv~lL~---~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~--------~~v~~~a~~~L~n 360 (684)
++..|-.+|. +++ +.++.-|+.+|+.+..+... .++..|...|.+++ +.++..|+..||-
T Consensus 393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566667775 344 89999999999999986542 14677777776544 6788899999998
Q ss_pred hhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHh-cCCcHHHHHHHH
Q 035507 361 VAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI-HSNDEQVLTDAC 439 (684)
Q Consensus 361 La~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~al 439 (684)
+...+. ++. ++..|...+. +.+..+...|+.+|+.+-.+..+ ..++..|++.+ .+.+..++..++
T Consensus 464 a~~GS~--~ee-----v~e~L~~~L~-dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSA--NIE-----VYEALKEVLY-NDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCC--CHH-----HHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCC--CHH-----HHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence 764432 122 3567777774 33445566888888876544321 22344444433 356788999999
Q ss_pred HHHHhhccCCChHHHHHHHHhchHHHHHHhcC-CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCCh
Q 035507 440 WALFGLSGDRNNDKIQAVIEAGVCGRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKN 518 (684)
Q Consensus 440 ~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~ 518 (684)
.+|+.+. -+.++. ++.+++.|. +.++.+|..|+.+++--..+..... .+..|+..+.+..+.
T Consensus 530 lgLGll~-~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALIN-YGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHT-TTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCH
T ss_pred HHHHhhh-CCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcH
Confidence 9999887 555544 344444443 5678888888888876655544221 345555555443378
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh-ccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh
Q 035507 519 SIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL-QNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDL 597 (684)
Q Consensus 519 ~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~l 597 (684)
.+|+.|+.+|+.|+.+.++ .++.++..+ ++.++.+|..|++|++.+..+.... .+++.|..+
T Consensus 593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L 655 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHH
Confidence 8999999999999877643 456666644 5679999999999999998643211 146677888
Q ss_pred ccCCChHHHHHHHHHHHHHHhcc
Q 035507 598 LQCADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 598 L~~~~~~v~~~al~~L~~il~~~ 620 (684)
.++.+..|+..|+.+|..+..-.
T Consensus 656 ~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 656 TKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp HTCSSHHHHHHHHHHHHHHSTTC
T ss_pred ccCCCHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999887543
No 76
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.53 E-value=2.2e-05 Score=81.82 Aligned_cols=321 Identities=12% Similarity=0.139 Sum_probs=197.9
Q ss_pred cCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCC---CCchhHhhcCC-HHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 333 HDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSS---GCRDLVLSEGA-LIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 333 ~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~---~~r~~i~~~g~-l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
..++..++.+|.. .+.++.+.++..+.-+..+++ .....+..... ...+........+.-....++.++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 3567888888875 778888899988888887766 21111122211 122333332334444455666666666544
Q ss_pred CCCCChhhhhchHH--HHHHHhcC-CcHHHHHHHHHHHHhhccCCChHHHHHHHHhc--hHHHHHHhcC----CC-----
Q 035507 408 KPRPLFDQVRPALP--ALAQLIHS-NDEQVLTDACWALFGLSGDRNNDKIQAVIEAG--VCGRLVELLG----HP----- 473 (684)
Q Consensus 408 ~~~~~~~~~~~~l~--~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g--~l~~L~~lL~----~~----- 473 (684)
.+. ........+. -+...+.. ++.+.+.-++.++..+. ..++.+..+.+.+ .++.++.++. +.
T Consensus 156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll--~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELA--VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHH--TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHh--cchhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 322 3333344444 34444554 23455666888888888 4566777676542 4666654432 11
Q ss_pred --------CcccHhHHHHHHHHHHcCChhhHHHHHhcCCh--HHHHHHhccCCChhHHHHHHHHHHHHhcCCh----HHH
Q 035507 474 --------SPSVLTPALWTVGNIVMGDDFQTQCIINHGAV--PCLLALLIHNHKNSIKKEVSWIISNIACGNR----EQI 539 (684)
Q Consensus 474 --------~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~ 539 (684)
...++..++.++.-++...+ ..+.+...++. +.|+.++......++-+-+..++.|+....+ ..+
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 23457788999988876544 55666665543 6677777766578999999999999987542 222
Q ss_pred H-HHHHhCCHHHHHHHhccC---CHhHHHHHHHHHHHhh---------------------cCC----CH----HHHHHHH
Q 035507 540 Q-AVIDAGLIGPLVNLLQNA---EFDIKEEAAWAISNAS---------------------SRG----TH----DQIKYLV 586 (684)
Q Consensus 540 ~-~l~~~g~l~~Li~ll~~~---~~~v~~~a~~aL~nl~---------------------~~~----~~----~~~~~l~ 586 (684)
. .++..++++ +++.|... |+++....-.....+- ... ++ ++..++.
T Consensus 312 ~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 312 KQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 3 233444544 55555442 6666544333222221 110 11 1122222
Q ss_pred HC--CChHHHHhhccC----------CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhc
Q 035507 587 TE--GCIKPLCDLLQC----------ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQS 654 (684)
Q Consensus 587 ~~--g~l~~L~~lL~~----------~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~ 654 (684)
+. .+++.|.++|++ .|+.+...|+.=+..+++.-+.. ...+++.|+-+.+..|..
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-------------r~i~~~lg~K~~VM~Lm~ 457 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLN 457 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTS
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhc
Confidence 22 247888888873 47888999999999999886643 367889999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 035507 655 HDNNEIHEKSVKILETY 671 (684)
Q Consensus 655 ~~~~~i~~~a~~ii~~~ 671 (684)
|+|++|+..|...+++.
T Consensus 458 h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 458 HSDSRVKYEALKATQAI 474 (480)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999888775
No 77
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.52 E-value=3.1e-06 Score=97.14 Aligned_cols=308 Identities=13% Similarity=0.166 Sum_probs=215.5
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc-
Q 035507 246 TKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS- 324 (684)
Q Consensus 246 ~~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~- 324 (684)
.....+..+++.+...+......|+..+..++....... .+..+++..+.+.+.+..++ +.|+.++..++....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~ 85 (986)
T 2iw3_A 11 QSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNL 85 (986)
T ss_dssp HHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTC
T ss_pred chHHHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCC
Confidence 334466777777776556666778888888776543111 11125778888888776523 889999999995321
Q ss_pred --hhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507 325 --ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS 402 (684)
Q Consensus 325 --~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~ 402 (684)
..-..++ +.+|.++....+....|++.|..++..++..-+... + ...++.|+..+.....-..+..|+.++.
T Consensus 86 ~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~ 159 (986)
T 2iw3_A 86 SPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFS 159 (986)
T ss_dssp CTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 2222222 678999999888889999999999888875544321 1 3458889999966667788999999999
Q ss_pred HhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHH
Q 035507 403 NLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPAL 482 (684)
Q Consensus 403 nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al 482 (684)
.|+...+.........++|.+...+.+..+++...|..++..+|..-.+..++ ..+|.|++.+.+++. ...++
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~ 232 (986)
T 2iw3_A 160 AMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETV 232 (986)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHH
T ss_pred HHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHH
Confidence 99976543344456889999999999999999999999988877222232222 578999999988743 44445
Q ss_pred HHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc--CChHHHHHHHHhCCHHHHHHHhccC-C
Q 035507 483 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC--GNREQIQAVIDAGLIGPLVNLLQNA-E 559 (684)
Q Consensus 483 ~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~g~l~~Li~ll~~~-~ 559 (684)
..|+.-+--.. .....+ +=.+|.|..-|... ...+++.++-++.|++. .+|.....++- .++|.+.+..... +
T Consensus 233 ~~l~~~tfv~~-v~~~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~ 308 (986)
T 2iw3_A 233 HLLGATTFVAE-VTPATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIAD 308 (986)
T ss_dssp HHHTTCCCCSC-CCHHHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCS
T ss_pred HHhhcCeeEee-ecchhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCC
Confidence 55544332221 111110 01467777788777 88899999999999997 66666666554 5888888877664 9
Q ss_pred HhHHHHHHHHHHHhhc
Q 035507 560 FDIKEEAAWAISNASS 575 (684)
Q Consensus 560 ~~v~~~a~~aL~nl~~ 575 (684)
|++|..|..|+..+..
T Consensus 309 pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 309 PEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888854
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.1e-06 Score=86.14 Aligned_cols=194 Identities=11% Similarity=0.096 Sum_probs=142.8
Q ss_pred HHHHhcCCCChHHHHHHHHHHHH-hhCCCCCCchhHhh-cCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC-CCCh-
Q 035507 338 IFVKLLASPSDDVREQAVWALGN-VAADSSGCRDLVLS-EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP-RPLF- 413 (684)
Q Consensus 338 ~Li~lL~~~~~~v~~~a~~~L~n-La~~~~~~r~~i~~-~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~-~~~~- 413 (684)
.+-..+.+.++.-|..|+..|+. ++...+.......+ ...+..|...+..+.+..++..|+.+++.++.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35566788999999999999999 87554432210011 12456666677567888899999999999997654 3333
Q ss_pred hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh
Q 035507 414 DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD 493 (684)
Q Consensus 414 ~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 493 (684)
.....++|.++..+.+..+.++..+..++..++ ...+.....-.-..+++.|...|++.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~-~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTIC-KYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHH-HHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 566789999999999999999999888888877 3221100000011367889999999999999999999999986655
Q ss_pred h---hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 494 F---QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 494 ~---~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
. .....+...++|.+.+++.+. ++.+|..|..+++.++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 2 232333357999999999998 99999999999999875
No 79
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.50 E-value=2.4e-06 Score=79.31 Aligned_cols=184 Identities=16% Similarity=0.172 Sum_probs=149.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.+..+..+|...|+.++..|+.++.+++..-+...+...-..+++.++.++++.+ ..+...|+.||..+..+.+-....
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHHH
Confidence 6788999999999999999999999999886544455555668999999998888 899999999999999976655544
Q ss_pred HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
+.. ++.+|..++.++++-+++.|+..++.+--..+ ..+++..+..++ .+.+..++..++.++.+++....
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccC
Confidence 442 36788899999999999999999999922221 122456777777 89999999999999999998752
Q ss_pred CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 410 RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 410 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
. ......++.-+..++.++|+.++..|+.++-.+.
T Consensus 183 D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 183 D--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp S--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred C--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2 2334566667778899999999999999999988
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.37 E-value=8e-08 Score=84.30 Aligned_cols=122 Identities=19% Similarity=0.179 Sum_probs=94.0
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC
Q 035507 289 ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368 (684)
Q Consensus 289 ~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~ 368 (684)
....++.++.+|++++ +.+|..|+++|..+.. ..++.|+.+|.++++.+|..|+++|+++..
T Consensus 10 ~~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp -----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----
T ss_pred ccccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----
Confidence 3456788999999887 7999999999987654 237899999999999999999999999852
Q ss_pred chhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 035507 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGL 445 (684)
Q Consensus 369 r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L 445 (684)
...++.|+..+ .+++..++..++|+|..+.. ...++.|..++.++++.++..++++|..+
T Consensus 72 ------~~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ------ERAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 12478888888 67889999999999999862 35789999999999999999999998764
No 81
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.35 E-value=5.6e-06 Score=81.10 Aligned_cols=190 Identities=11% Similarity=0.071 Sum_probs=138.6
Q ss_pred HHHhccCCchHHHHHHHHHHHH-hccCCCCCC--hhhhhchHHHHHHHh-cCCcHHHHHHHHHHHHhhccCCCh-HHHH-
Q 035507 382 LAQLNEHTELSMLRIATTTLSN-LCRGKPRPL--FDQVRPALPALAQLI-HSNDEQVLTDACWALFGLSGDRNN-DKIQ- 455 (684)
Q Consensus 382 l~~L~~~~~~~v~~~a~~~L~n-L~~~~~~~~--~~~~~~~l~~L~~lL-~~~d~~v~~~al~~L~~L~~~~~~-~~~~- 455 (684)
-..+ .+.+..-++.++..|.. ++.+.+... ......++..+.+.+ .+.+..++..|+.+++.++ .+-. ....
T Consensus 22 ~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la-~~l~~~~f~~ 99 (249)
T 2qk1_A 22 QERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELIC-DKLKTPGFSK 99 (249)
T ss_dssp HHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH-HHHCTTTSCH
T ss_pred HHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HhcccccccH
Confidence 3444 67788889999999999 876533222 222346688888888 6889999999999999998 3221 1111
Q ss_pred HHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC
Q 035507 456 AVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN 535 (684)
Q Consensus 456 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 535 (684)
... .-++|.++..+.+..+.++..+..++..++...+.....-.-..+++.|...|.+. ++.+|..++.+|+.++...
T Consensus 100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 122 23789999999999999999999999888864421110000002577888899998 9999999999999998643
Q ss_pred h---HHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 536 R---EQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 536 ~---~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
+ ......+...++|.|..++.+.+.++|..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3 444444434699999999999999999999999999875
No 82
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.24 E-value=2.2e-07 Score=81.43 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=92.2
Q ss_pred hchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHH
Q 035507 460 AGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI 539 (684)
Q Consensus 460 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 539 (684)
...++.+..+|.++++.+|..|+++|+.+.. + .++.|...|.++ ++.+|..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC------
Confidence 4567889999999999999999999987632 1 258899999988 99999999999999853
Q ss_pred HHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHH
Q 035507 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLEN 615 (684)
Q Consensus 540 ~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~ 615 (684)
...++.|+..+.++++.+|..|+++|+++.. ++ .++.|..+++++++.++..+..+|.+
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1257889999999999999999999999852 22 46788888999999999999988764
No 83
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.14 E-value=0.00028 Score=73.64 Aligned_cols=295 Identities=15% Similarity=0.141 Sum_probs=180.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHH--HHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcC--
Q 035507 259 WSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVP--RFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHD-- 334 (684)
Q Consensus 259 ~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~--~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g-- 334 (684)
.++++-.+..|...+..+........+.+ ..++. .++..|........+..|+.+|..+.. .++.|..+.+.+
T Consensus 135 ~~dd~~~ll~a~~l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~ 211 (480)
T 1ho8_A 135 KGDFQTVLISGFNVVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKK 211 (480)
T ss_dssp CSSHHHHHHHHHHHHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHH
T ss_pred cccchHHHHHHHHHHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccc
Confidence 33444445555555545443332221111 11222 455566653224667789999999998 888998887653
Q ss_pred ChHHHHHhcCC-----------------CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCH--HHHHHHhccCCchHHHH
Q 035507 335 AVPIFVKLLAS-----------------PSDDVREQAVWALGNVAADSSGCRDLVLSEGAL--IPLLAQLNEHTELSMLR 395 (684)
Q Consensus 335 ~i~~Li~lL~~-----------------~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l--~~Ll~~L~~~~~~~v~~ 395 (684)
.++.++.++.. ....++.+++.+++-++-..+. .+.+...+.. ..|+..+.....+.+.|
T Consensus 212 ~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~-~~~l~~~~i~~~~~L~~i~k~s~KEKvvR 290 (480)
T 1ho8_A 212 FMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF-ANELVQKYLSDFLDLLKLVKITIKEKVSR 290 (480)
T ss_dssp HHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH-HHHHHTTSHHHHHHHHHHHHHCCSHHHHH
T ss_pred hhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH-HHHHHhcchHHHHHHHHHHHhhccchhHH
Confidence 36666543321 1356789999999999877643 3444444432 56677777788899999
Q ss_pred HHHHHHHHhccCCCCCChh------hhhchHHHHHHHhc---CCcHHHHHHHHHHHHhhccC------CChHHHHHHHHh
Q 035507 396 IATTTLSNLCRGKPRPLFD------QVRPALPALAQLIH---SNDEQVLTDACWALFGLSGD------RNNDKIQAVIEA 460 (684)
Q Consensus 396 ~a~~~L~nL~~~~~~~~~~------~~~~~l~~L~~lL~---~~d~~v~~~al~~L~~L~~~------~~~~~~~~~~~~ 460 (684)
.++.++.|+....+..... ...++++ ++..|. -.|+++.++.-.....|- . .-+++..
T Consensus 291 v~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~-~~~~~ltsfDeY~~----- 363 (480)
T 1ho8_A 291 LCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILE-NEYQELTSFDEYVA----- 363 (480)
T ss_dssp HHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHH-HHHHTCCHHHHHHH-----
T ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHH-HHHHhcccHHHHHH-----
Confidence 9999999999875322111 1133444 444443 356777665544333322 0 0111111
Q ss_pred chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc---------CCChhHHHHHHHHHHHH
Q 035507 461 GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH---------NHKNSIKKEVSWIISNI 531 (684)
Q Consensus 461 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl 531 (684)
+..-..|.. +|.-+.+..| --|...-.+...+ ++..|+++|.+ +.++.+..-||.=++.+
T Consensus 364 ---El~sG~L~W-SP~H~se~FW-~ENa~kf~e~~~~------llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digef 432 (480)
T 1ho8_A 364 ---ELDSKLLCW-SPPHVDNGFW-SDNIDEFKKDNYK------IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHV 432 (480)
T ss_dssp ---HHHHTCCCC-CGGGGCHHHH-HHHSGGGSSGGGH------HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred ---HHhcCCccc-CCCccchhHH-HHHHHHHHhcchH------HHHHHHHHHhhhccccccccCCCcceEEeecccHHHH
Confidence 111122333 2322333333 3344333333332 56788888863 12678888999999999
Q ss_pred hcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 532 ACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 532 ~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
+...|..+..+-+.|+=..+++++.++|++|+.+|+.|+..+..
T Consensus 433 vr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 433 VELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99888888877788999999999999999999999999988764
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.08 E-value=0.00039 Score=79.98 Aligned_cols=297 Identities=13% Similarity=0.132 Sum_probs=198.3
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC--CCCChhhh
Q 035507 339 FVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK--PRPLFDQV 416 (684)
Q Consensus 339 Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~--~~~~~~~~ 416 (684)
+.+-+...+..-+..++..+.++.......+. ...+.+..+...+....+. +.|+.++..+|... ........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHD--VPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSS--CCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccc--cchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence 33334433333445677777777654322221 2235667777777333233 89999999999665 22334444
Q ss_pred hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-CcccHhHHHHHHHHHHcCChhh
Q 035507 417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-SPSVLTPALWTVGNIVMGDDFQ 495 (684)
Q Consensus 417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~ 495 (684)
-+.+|.++....+.+..|+..|-.++..+....++... ..++|.|+..|.+. .+..+..|+.++..++...+.+
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 57889999998888899998888777766612233222 35688888888654 6889999999999999766655
Q ss_pred HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc--CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507 496 TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC--GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA 573 (684)
Q Consensus 496 ~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl 573 (684)
...-+ ..++|.+...+.+. .++|++.|..++..+|. ++.+. ...+|.|++.+.+++. ..++...|+.-
T Consensus 169 ~~~~~-~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 169 VALRM-PELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGAT 238 (986)
T ss_dssp HHHHH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred HHHhc-cchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence 44333 25889999999998 99999999999999986 44332 2479999999987743 45555555544
Q ss_pred hcCC--CHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHH
Q 035507 574 SSRG--THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIEN 651 (684)
Q Consensus 574 ~~~~--~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~ 651 (684)
+-.. +...... .++.|..-|......+...+.-++.|+++.-+.-. ...+|.. ..+..++.
T Consensus 239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~-------~~~~f~~-----~l~p~~~~ 301 (986)
T 2iw3_A 239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ-------VIAPFLG-----KLLPGLKS 301 (986)
T ss_dssp CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHT-----TTHHHHHH
T ss_pred eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH-------HHhhhhh-----hhhhHHHH
Confidence 3322 2222222 35666777888899999999999999998765431 2222332 34566666
Q ss_pred h-hcCCCHHHHHHHHHHHHHhc
Q 035507 652 L-QSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 652 L-~~~~~~~i~~~a~~ii~~~f 672 (684)
. ....+||+++.|.+.++...
T Consensus 302 ~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 302 NFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HTTTCCSHHHHHHHHHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHHHHHH
Confidence 4 56789998888877777663
No 85
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.99 E-value=0.00022 Score=84.37 Aligned_cols=330 Identities=9% Similarity=0.064 Sum_probs=176.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCC------C------cHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCCch
Q 035507 260 SDDNNLQLEATTQFQKLLSIES------M------PIEEVIESGVVPRFVEFLMRE--DYPQLQFQAAWALTNIASGTSE 325 (684)
Q Consensus 260 s~~~~~~~~a~~~L~~l~s~~~------~------~~~~ii~~g~i~~Lv~lL~~~--~~~~v~~~A~~~L~~l~~~~~~ 325 (684)
+.++..+..|+.++..++.... . ....++..-++| .|.++ ..+.+|..|+|+++.++..-.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~- 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT- 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC-
Confidence 5678889999999998875321 1 222222222333 34555 148999999999999998421
Q ss_pred hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC-------CCC-chhHhh--cCCHHHHHHHhccCC----ch
Q 035507 326 NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADS-------SGC-RDLVLS--EGALIPLLAQLNEHT----EL 391 (684)
Q Consensus 326 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~-------~~~-r~~i~~--~g~l~~Ll~~L~~~~----~~ 391 (684)
.. . -..+++.++..|.+++..|+..|+++|.+++... +.+ ++.+.. ...+..|+..+.... +.
T Consensus 491 -~~-~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 491 -KA-Q-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp -HH-H-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred -HH-H-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcc
Confidence 11 1 2245788888888888999999999999998642 121 222211 123344445553321 00
Q ss_pred HHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc-----CCcHHHHHHHHHHHHhhccCC-ChHHHHHHHHhchHHH
Q 035507 392 SMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH-----SNDEQVLTDACWALFGLSGDR-NNDKIQAVIEAGVCGR 465 (684)
Q Consensus 392 ~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~al~~L~~L~~~~-~~~~~~~~~~~g~l~~ 465 (684)
.....+..++..++.............+++.+...+. .+++.....++.+++.++ .. .++... -+...++|.
T Consensus 568 ~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~-~~~~~~~~~-~~~~~~~p~ 645 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL-NYTQRQNLP-LLVDSMMPT 645 (960)
T ss_dssp TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HTSCGGGHH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH-hcCCcchHH-HHHHHHHHH
Confidence 1223445555554433222222234455555555443 245677778899998888 43 333333 334457888
Q ss_pred HHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHH--HHhccCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 035507 466 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL--ALLIHNHKNSIKKEVSWIISNIACGNREQIQAVI 543 (684)
Q Consensus 466 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~--~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 543 (684)
+...|..........++.+++.+....+.....+. .+++.+. ..+... . .....+.+|.++....++.+.. +
T Consensus 646 ~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~~l~~~~~~~~~-~--~~~~~~~~L~~~~~~~~~~~~~-~ 719 (960)
T 1wa5_C 646 FLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK--PLAQPLLAPNVWELK-G--NIPAVTRLLKSFIKTDSSIFPD-L 719 (960)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG--GGHHHHTSGGGGCCT-T--THHHHHHHHHHHHHHHGGGCSC-S
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHH--HHHHHHcCHHHhcCC-C--CchhHHHHHHHHHHhChHHHHH-H
Confidence 88888777677888888888887754311111111 1344444 333332 1 2334455555554311111000 0
Q ss_pred HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHH-HHHHHHHCCChHHHHhhccCC-ChHHHHHHH
Q 035507 544 DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHD-QIKYLVTEGCIKPLCDLLQCA-DPKIVTVCL 610 (684)
Q Consensus 544 ~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~g~l~~L~~lL~~~-~~~v~~~al 610 (684)
+ .++..+..++.+... ...|.++++.++.....+ ...++-. +++.+...+... .++++...+
T Consensus 720 ~-~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~--i~~~l~~~l~~~~~~~~~~~~l 783 (960)
T 1wa5_C 720 V-PVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQ--IAVLLLQRLQNSKTERYVKKLT 783 (960)
T ss_dssp H-HHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHGGGSSCCHHHHHHHH
T ss_pred H-HHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHhhCCcHhHHHHHH
Confidence 0 022223344444433 377888888887654444 3333322 455666666554 344543333
No 86
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.95 E-value=0.00056 Score=81.04 Aligned_cols=291 Identities=11% Similarity=0.059 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-----CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHH
Q 035507 307 QLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-----PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPL 381 (684)
Q Consensus 307 ~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-----~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~L 381 (684)
..|..+..+|..++....+..-..+ ++.+-..+.+ ++...++.|+.+++.++....... ...++.+
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l 506 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEIL----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRL 506 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHH----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHH
Confidence 3556677777777763321111111 2222233322 577899999999999986654311 1234444
Q ss_pred HHHh---cc-CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHH
Q 035507 382 LAQL---NE-HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAV 457 (684)
Q Consensus 382 l~~L---~~-~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~ 457 (684)
+..+ .. +.++.++..++|+++.++..-.. .......+++.++..+ + +.++..|++++.+++ ..........
T Consensus 507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~-~~~~~~l~p~ 581 (971)
T 2x1g_F 507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELC-RDCQLQLKPY 581 (971)
T ss_dssp HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHH-HHCHHHHHHH
T ss_pred HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHH-HHHHHhcccc
Confidence 4433 21 24788999999999999875322 1245677888888877 2 789999999999999 5443333322
Q ss_pred HHhchHHHHHHhcCCC--CcccHhHHHHHHHHHHcCCh-hhHHHHHhcCChHHHHHH----hccCC-ChhHHHHHHHHHH
Q 035507 458 IEAGVCGRLVELLGHP--SPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLAL----LIHNH-KNSIKKEVSWIIS 529 (684)
Q Consensus 458 ~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~-~~~~~~i~~g~l~~L~~l----L~~~~-~~~v~~~a~~~L~ 529 (684)
.+ .++..+..++..+ +...+..++.+++.++...+ +.....+. .+++.++.. +.... +...+..+...+.
T Consensus 582 ~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 659 (971)
T 2x1g_F 582 AD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLN 659 (971)
T ss_dssp HH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 22 4666777777663 45778888999999886432 22222221 233444433 33321 2223444444554
Q ss_pred HHhc-----CC-----------hHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCCh
Q 035507 530 NIAC-----GN-----------REQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCI 591 (684)
Q Consensus 530 nl~~-----~~-----------~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l 591 (684)
.++. +. ++....+ ...++|.+..++... +..+.+.++++++.++..-..+...++-. ++
T Consensus 660 ~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~--~~ 736 (971)
T 2x1g_F 660 MISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQD--LC 736 (971)
T ss_dssp HHHHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH--HH
T ss_pred HHHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHH--HH
Confidence 4432 11 1111222 245888888888643 77999999999999775211111112111 23
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 592 KPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 592 ~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
+.+...+..... ..+++.+..++..
T Consensus 737 ~~l~~~~~~~~~---~~~l~l~~~~i~~ 761 (971)
T 2x1g_F 737 LFIVASFQTRCC---APTLEISKTAIVM 761 (971)
T ss_dssp HHHHHHCC--CC---HHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCc---hHHHHHHHHHHHH
Confidence 444444443221 3466777766653
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.93 E-value=0.00035 Score=82.62 Aligned_cols=258 Identities=9% Similarity=0.043 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcC------CCChHHHHHHHHHHHHhhCCCCCCchhHh---h-cC
Q 035507 307 QLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA------SPSDDVREQAVWALGNVAADSSGCRDLVL---S-EG 376 (684)
Q Consensus 307 ~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~------~~~~~v~~~a~~~L~nLa~~~~~~r~~i~---~-~g 376 (684)
..|..|..+|..++.... +.++. .+++.+...+. +++...++.|+.+++.++.....+..... . ..
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 467788888888887332 22211 12344444454 56788999999999999854321110000 0 01
Q ss_pred CHH----HHHHHhccC--CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC
Q 035507 377 ALI----PLLAQLNEH--TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN 450 (684)
Q Consensus 377 ~l~----~Ll~~L~~~--~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~ 450 (684)
..+ .++..+... ..+-++..++|+++.++..- .......+++.++..+.+++..|+..|++++.+++ ...
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~-~~~ 527 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKIL-TIR 527 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TCB
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-hcc
Confidence 111 233334322 27889999999999999864 23457888999999998888999999999999988 421
Q ss_pred -----------hHHHHHHHHhchHHHHHHhcCCCC-----cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh--
Q 035507 451 -----------NDKIQAVIEAGVCGRLVELLGHPS-----PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL-- 512 (684)
Q Consensus 451 -----------~~~~~~~~~~g~l~~L~~lL~~~~-----~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL-- 512 (684)
.......+ ..+++.|+.++.... ......++.+++.++....+....... .+++.|...+
T Consensus 528 ~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~ 605 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTI 605 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHH
T ss_pred cccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHH
Confidence 11111111 146667777776531 113456777777765422211111111 1334444444
Q ss_pred --ccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 513 --IHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 513 --~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
.++.++..+..++.+++.++.. .++....+ ...++|.+..++.....+....+...+..+..
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 3343667777788888888764 44444433 44588999999987766777777777777664
No 88
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.87 E-value=0.0025 Score=74.90 Aligned_cols=343 Identities=11% Similarity=0.108 Sum_probs=190.5
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCC---c--
Q 035507 252 PMMVAGVW-SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFV-EFLMREDYPQLQFQAAWALTNIASGT---S-- 324 (684)
Q Consensus 252 ~~lv~~L~-s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv-~lL~~~~~~~v~~~A~~~L~~l~~~~---~-- 324 (684)
+.+...+. +.++++...++.++...++- -+...+++.++++.+. .+|. + ++++..|+.+|..+.+.. +
T Consensus 197 ~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~ 271 (1023)
T 4hat_C 197 KLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDND 271 (1023)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchH
Confidence 33334443 45567777788888887763 3567788889999999 8885 3 789999999999999732 2
Q ss_pred hhHHHHHh--cCChHHH--------------HHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhc----CC----HHH
Q 035507 325 ENTKVVIE--HDAVPIF--------------VKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE----GA----LIP 380 (684)
Q Consensus 325 ~~~~~i~~--~g~i~~L--------------i~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~----g~----l~~ 380 (684)
.....+.. .+.+..+ ...-...+.+..+..+..+..+..... ..+... +. +..
T Consensus 272 ~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~---~li~~~~~~~~~l~~~l~~ 348 (1023)
T 4hat_C 272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR---ALLESDESLRELLLNAHQY 348 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG---GGGTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHH---HHHhCCcchhHHHHHHHHH
Confidence 11111110 0111111 111122345556666666655543221 111111 11 223
Q ss_pred HHHHhccCCchHHHHHHHHHHHHhccCCC--CCChhhh----hchHHHHHHHhcCCc--------------------HH-
Q 035507 381 LLAQLNEHTELSMLRIATTTLSNLCRGKP--RPLFDQV----RPALPALAQLIHSND--------------------EQ- 433 (684)
Q Consensus 381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~--~~~~~~~----~~~l~~L~~lL~~~d--------------------~~- 433 (684)
++.. ...++.++...++..-..++.... ....... ..+++.++.-+..+. ++
T Consensus 349 Ll~~-~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~ 427 (1023)
T 4hat_C 349 LIQL-SKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTI 427 (1023)
T ss_dssp HHHH-TTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGH
T ss_pred HHHh-hCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHH
Confidence 3332 245577777776665555554221 1111222 334444444433221 00
Q ss_pred HH----HHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC--CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHH
Q 035507 434 VL----TDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPC 507 (684)
Q Consensus 434 v~----~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~ 507 (684)
.. .+++..+.++. .++..+ -+++.+.+.+.+ .++..++.+++++|.++.+.......-.-..+++.
T Consensus 428 ~~f~~~Rd~L~~l~~l~---~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~ 499 (1023)
T 4hat_C 428 QLYKSEREVLVYLTHLN---VIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD 499 (1023)
T ss_dssp HHHHHHHHHHHHHHHHC---HHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC---HHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 11 12333333332 111111 123444444543 57889999999999999876543222222357888
Q ss_pred HHHHhcc-----CCChhHHHHHHHHHHHHhc---CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCH
Q 035507 508 LLALLIH-----NHKNSIKKEVSWIISNIAC---GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTH 579 (684)
Q Consensus 508 L~~lL~~-----~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~ 579 (684)
|+.++.+ + ...++..++|+++..+. ..++... .++..|++.+...++.++..|++++.+++..+..
T Consensus 500 Ll~l~~~~~~~d~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 500 LLDLCVKKRGKDN-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHHHHHCCSHHH-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHhhhccccCcc-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888864 3 45567788999998865 2333322 2456677777777889999999999999974332
Q ss_pred HHHHHHHH----------CCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 580 DQIKYLVT----------EGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 580 ~~~~~l~~----------~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
.+.. ..++..+......-+++-+..+.+++..++....
T Consensus 574 ----~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 574 ----HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp ----HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ----HhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 2221 1123333444444567777888888888887654
No 89
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.80 E-value=0.0082 Score=70.59 Aligned_cols=347 Identities=6% Similarity=0.059 Sum_probs=183.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCC----CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCh
Q 035507 261 DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRE----DYPQLQFQAAWALTNIASGTSENTKVVIEHDAV 336 (684)
Q Consensus 261 ~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~----~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i 336 (684)
.++..+.+++++++.++....+....-.-..+++.|+.++.+. ....++..++|+++..+.--..+... . ...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L-~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-L-RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-H-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-H-HHHH
Confidence 5799999999999998765443323233345678888887641 11345567789998877611111111 1 1345
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh------cCCHHHHHHHhc---cCCchHHHHHHHHHHHHhccC
Q 035507 337 PIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS------EGALIPLLAQLN---EHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 337 ~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~------~g~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~~ 407 (684)
..|+..+..+++.+++.|++++.+||.+. +..+.. ...++.++..+. ..-+..-...+..+++.+...
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c---~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKC---KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHH---THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHH---HHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 66677777778999999999999999653 333321 113444444432 234556667888889998887
Q ss_pred CCCCC--hhhhhchHHHHHH----Hhc----C----Cc---HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc
Q 035507 408 KPRPL--FDQVRPALPALAQ----LIH----S----ND---EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL 470 (684)
Q Consensus 408 ~~~~~--~~~~~~~l~~L~~----lL~----~----~d---~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL 470 (684)
.+... ......+++.+.. +.. . .| .......+.++..++ ..-.......+. .+.+.++++.
T Consensus 620 ~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~-~~lg~~f~~~~~-~i~~~~l~~y 697 (1023)
T 4hat_C 620 ERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVC-TSMGADFYPQLG-HIYYNMLQLY 697 (1023)
T ss_dssp CCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHH-HHHGGGGHHHHH-HHHHHHHHHH
T ss_pred CCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHH-HHhcHHHHHHHH-HHHHHHHHHH
Confidence 64322 1122333333222 221 0 01 123344444444444 111100000000 1222222221
Q ss_pred CC------------CC-----c------ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc----cC----CChh
Q 035507 471 GH------------PS-----P------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI----HN----HKNS 519 (684)
Q Consensus 471 ~~------------~~-----~------~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~----~~----~~~~ 519 (684)
+. +. + .++...++.+.......++ .+ .+...++|.++..+- .. .++.
T Consensus 698 ~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~-~~-~~~~~~~~~l~~~vl~dY~~~~~~~r~~~ 775 (1023)
T 4hat_C 698 RAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARN-LD-DVVKVLVEPLLNAVLEDYMNNVPDARDAE 775 (1023)
T ss_dssp HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSC-HH-HHHHHTHHHHHHHHHHHHHHSCGGGCCHH
T ss_pred HHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCC-HH-HHHHHhHHHHHHHHHHHHHhCChhhccHH
Confidence 11 10 1 1122222322222222211 11 122345666655441 11 1344
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC---CHhHHHHHHHHHHHhhcCC-------CHHHHHHHHHCC
Q 035507 520 IKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA---EFDIKEEAAWAISNASSRG-------THDQIKYLVTEG 589 (684)
Q Consensus 520 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~g 589 (684)
+-.-..-.+..+...-.+.+..++++ ++..=+.+++.+ .|+.|..-...+..+.... .++..+.
T Consensus 776 vL~l~s~iv~~~~~~~~~~~~~il~~-vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~----- 849 (1023)
T 4hat_C 776 VLNCMTTVVEKVGHMIPQGVILILQS-VFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL----- 849 (1023)
T ss_dssp HHHHHHHHHHHHGGGCHHHHHHHHHH-HHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHH-----
Confidence 55555555555544444555555554 566666777653 6888877777777765432 2223222
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~ 622 (684)
+++.++-.++++.+++...++.++..++.....
T Consensus 850 ~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~ 882 (1023)
T 4hat_C 850 FVDAICWAFKHNNRDVEVNGLQIALDLVKNIER 882 (1023)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 566777788999999999999999999876553
No 90
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.80 E-value=0.00049 Score=68.26 Aligned_cols=185 Identities=14% Similarity=0.127 Sum_probs=137.4
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHH
Q 035507 421 PALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII 500 (684)
Q Consensus 421 ~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i 500 (684)
..++.-|.+.+.+.+..++..|..+. ..+......++..+++..|+....+.+...+..++++++++....+ ....++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~-q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~-Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIF-QEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD-GMLGVV 198 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-HTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH-HHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHh-hcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc-cccchh
Confidence 34556666778888999999999855 4677888999999999999999999999999999999999987544 443444
Q ss_pred -hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH--------hC--CHHHHHHHhc---cCCHhHHHHH
Q 035507 501 -NHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID--------AG--LIGPLVNLLQ---NAEFDIKEEA 566 (684)
Q Consensus 501 -~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~g--~l~~Li~ll~---~~~~~v~~~a 566 (684)
....+..+..++.+. +..|.+.|...|-.++..++.....+.+ .| .++.|+.+|+ ..+.+++..|
T Consensus 199 s~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 445788899999876 8999999999999998755433333332 11 3778999997 6799999999
Q ss_pred HHHHHHhhcCCC-HH----HHHHHHHCCChHHHHhhccCC--ChHHHHH
Q 035507 567 AWAISNASSRGT-HD----QIKYLVTEGCIKPLCDLLQCA--DPKIVTV 608 (684)
Q Consensus 567 ~~aL~nl~~~~~-~~----~~~~l~~~g~l~~L~~lL~~~--~~~v~~~ 608 (684)
...+-.+..+.. .+ ....+.+.|+-..+...++.. +++++..
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 988877776543 23 234445566556666667654 5555543
No 91
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.79 E-value=0.00072 Score=80.06 Aligned_cols=300 Identities=13% Similarity=0.092 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc---C--CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHH
Q 035507 306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL---A--SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIP 380 (684)
Q Consensus 306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL---~--~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~ 380 (684)
-..++.|+.+++.++.+-..... ..++.++.++ . ++++.++..++|+++.++..-....+.+. .+++.
T Consensus 478 w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~ 550 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINL 550 (971)
T ss_dssp CHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHH
Confidence 47889999999999985443221 2233333322 3 34889999999999999843211111111 23555
Q ss_pred HHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC--CcHHHHHHHHHHHHhhccCC-ChHHHHHH
Q 035507 381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS--NDEQVLTDACWALFGLSGDR-NNDKIQAV 457 (684)
Q Consensus 381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~L~~~~-~~~~~~~~ 457 (684)
++..+ + +.+...|++++.++|+.....-......++..+..++.. -+...+..++.+++.++ .. ..+.....
T Consensus 551 l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~-~~~~~~~~~~~ 625 (971)
T 2x1g_F 551 LVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLM-SLLRPEEIPKY 625 (971)
T ss_dssp HHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHH-HTSCTTHHHHH
T ss_pred HHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence 56566 2 678999999999999754222223345566666677776 35788888999998887 33 21222222
Q ss_pred HHh---chHHHHHHhcCCC--CcccHhHHHHHHHHHH---cCCh-------------hhHHHHHhcCChHHHHHHhccC-
Q 035507 458 IEA---GVCGRLVELLGHP--SPSVLTPALWTVGNIV---MGDD-------------FQTQCIINHGAVPCLLALLIHN- 515 (684)
Q Consensus 458 ~~~---g~l~~L~~lL~~~--~~~v~~~al~~L~nl~---~~~~-------------~~~~~~i~~g~l~~L~~lL~~~- 515 (684)
+.. .++..+..+++.. ++..+..+..+++.++ ..-. +.... +-..+++.+..++...
T Consensus 626 ~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~ 704 (971)
T 2x1g_F 626 LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWV 704 (971)
T ss_dssp HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhcc
Confidence 221 2233333444433 2223333444444433 2110 01111 1235788888887543
Q ss_pred CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC-C-HHH---HHHHHHCCC
Q 035507 516 HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG-T-HDQ---IKYLVTEGC 590 (684)
Q Consensus 516 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~-~-~~~---~~~l~~~g~ 590 (684)
.+..+.+.++++++.++..-.......+. .+++.++..+..... ..+++.++.++... . +.. ...+.. ..
T Consensus 705 ~~~~v~e~~~~~~~~~~~~~~~~~~p~l~-~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~-~~ 779 (971)
T 2x1g_F 705 EEIDVLEAACSAMKHAITNLRSSFQPMLQ-DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLR-EF 779 (971)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHC--CTHHH-HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHH-HH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccccHH-HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHH-HH
Confidence 26789999999999986521111111111 134444444443221 34677777776632 2 111 222222 12
Q ss_pred hHHHHhhccC-------CChHHHHHHHHHHHHHHhccccc
Q 035507 591 IKPLCDLLQC-------ADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 591 l~~L~~lL~~-------~~~~v~~~al~~L~~il~~~~~~ 623 (684)
...+.+++.. .+|+++......+..++......
T Consensus 780 ~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~ 819 (971)
T 2x1g_F 780 IQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQV 819 (971)
T ss_dssp HHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHH
Confidence 3333344433 37889999999999988876643
No 92
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.78 E-value=0.00031 Score=69.65 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=127.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.+..+++.|++++......|+..|..+++.+.....+++..+++..|+......+ ...+..++.+|.++.. .......
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~-~v~Gm~g 196 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLML-FVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTT-SHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHh-ccccccc
Confidence 4567888899888999999999999988888889999999999999999998887 8999999999999998 4444544
Q ss_pred HH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhc----------CCHHHHHHHhc--cCCchHHHHH
Q 035507 330 VI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE----------GALIPLLAQLN--EHTELSMLRI 396 (684)
Q Consensus 330 i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~----------g~l~~Ll~~L~--~~~~~~v~~~ 396 (684)
++ ....|..+..++.+.+..|...|+..|..++..++.....+... ..+..++..|. +..|.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 54 45678999999999889999999999999987765433332221 13668888885 3678899998
Q ss_pred HHHHHHHhccCCC
Q 035507 397 ATTTLSNLCRGKP 409 (684)
Q Consensus 397 a~~~L~nL~~~~~ 409 (684)
+...+..+....+
T Consensus 277 amtLIN~lL~~ap 289 (339)
T 3dad_A 277 TVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcCC
Confidence 8888877766544
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.76 E-value=0.00062 Score=80.54 Aligned_cols=338 Identities=13% Similarity=0.055 Sum_probs=187.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc---CCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCC
Q 035507 301 MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL---ASPSDDVREQAVWALGNVAADSSGCRDLVLSEGA 377 (684)
Q Consensus 301 ~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL---~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~ 377 (684)
.+.+ ...++.|+++++.++.+-.... ...++.++..+ .++++.++..++|+++.++..-....+. -...
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence 3344 6788999999999998543311 12334444433 3357889999999999987431111111 2346
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC--CcHHHHHHHHHHHHhhccCCCh-HHH
Q 035507 378 LIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS--NDEQVLTDACWALFGLSGDRNN-DKI 454 (684)
Q Consensus 378 l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~L~~~~~~-~~~ 454 (684)
++.++..+. + +.++..|++++.++|...+..-......+++.+..++.. -+...+..++.+++.++ ...+ +..
T Consensus 531 l~~l~~~l~-~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~-~~~~~~~~ 606 (963)
T 2x19_B 531 LPLVLHALG-N--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL-SALQVEEI 606 (963)
T ss_dssp HHHHHHHTT-C--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-TTSCHHHH
T ss_pred HHHHHHHhC-C--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH-hcCCHHHH
Confidence 777887773 2 688999999999999754322223345666666677764 35788889999999988 4432 333
Q ss_pred HHHHHhchHHHHHHhc----CCC-CcccHh---HHHHHHHHHHcCCh----------------------hhHHHHHhcCC
Q 035507 455 QAVIEAGVCGRLVELL----GHP-SPSVLT---PALWTVGNIVMGDD----------------------FQTQCIINHGA 504 (684)
Q Consensus 455 ~~~~~~g~l~~L~~lL----~~~-~~~v~~---~al~~L~nl~~~~~----------------------~~~~~~i~~g~ 504 (684)
...++ .+++.+...+ ..+ ++..+. .++.+|+.+...-. ..... +-..+
T Consensus 607 ~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 684 (963)
T 2x19_B 607 LKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQV 684 (963)
T ss_dssp HHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHH
Confidence 33332 2444444333 222 333333 45555655543211 00111 12245
Q ss_pred hHHHHHHhccC-CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHH----hcc-CCHhHHHHHHHHHHHhhc--C
Q 035507 505 VPCLLALLIHN-HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL----LQN-AEFDIKEEAAWAISNASS--R 576 (684)
Q Consensus 505 l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~l----l~~-~~~~v~~~a~~aL~nl~~--~ 576 (684)
++.+..++... .+..+.+.++.++..++..-.+... ..+|.++.. ... ..+ ..++.++.++. +
T Consensus 685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~ 755 (963)
T 2x19_B 685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFA 755 (963)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhC
Confidence 66666666432 2678899999999987642111111 123433333 222 122 24444444443 2
Q ss_pred CCH---HHHHHHHHCCChHHHHhhcc---CCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHH
Q 035507 577 GTH---DQIKYLVTEGCIKPLCDLLQ---CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIE 650 (684)
Q Consensus 577 ~~~---~~~~~l~~~g~l~~L~~lL~---~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~ 650 (684)
..+ +....+.+ .++..+..++. ..+|+++......+..++......--. ....... .++.+.
T Consensus 756 ~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~------~~~~~~~-----i~~~~~ 823 (963)
T 2x19_B 756 HEPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC------ERLDVKA-----VFQCAV 823 (963)
T ss_dssp TCTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC------TTSCHHH-----HHHHHH
T ss_pred CCcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC------CcccHHH-----HHHHHH
Confidence 221 12222111 12333333333 247999999999999999876543210 0000111 223333
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcC
Q 035507 651 NLQSHDNNEIHEKSVKILETYWC 673 (684)
Q Consensus 651 ~L~~~~~~~i~~~a~~ii~~~f~ 673 (684)
....+++.++.+.+.+++.+++.
T Consensus 824 ~~l~~~~~~~~~~~l~~l~~l~~ 846 (963)
T 2x19_B 824 LALKFPEAPTVKASCGFFTELLP 846 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHcCCCCHHHHHHHHHHHHHHHh
Confidence 33458899999999999988764
No 94
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.70 E-value=0.0047 Score=73.67 Aligned_cols=154 Identities=12% Similarity=0.158 Sum_probs=91.1
Q ss_pred HHHHHHhcC--CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc-----CCChhHHHHHHHHHHHHhcCC
Q 035507 463 CGRLVELLG--HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH-----NHKNSIKKEVSWIISNIACGN 535 (684)
Q Consensus 463 l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~-----~~~~~v~~~a~~~L~nl~~~~ 535 (684)
.+.+-..+. ..++..++.|+++++.++.+.......-.-..+++.+..+... + .+.++..++|+++..+.--
T Consensus 453 ~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-~~~v~~~~~~~lgry~~~~ 531 (1049)
T 3m1i_C 453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-KAVVASDIMYVVGQYPRFL 531 (1049)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-HHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-hHHHHHHHHHHHHHHHHHH
Confidence 344444454 3567789999999999986544321111111245555554321 2 4556667999999876421
Q ss_pred hHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHH--------HHHHHCCChHHHHhhccCCChHHHH
Q 035507 536 REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQI--------KYLVTEGCIKPLCDLLQCADPKIVT 607 (684)
Q Consensus 536 ~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l~~~g~l~~L~~lL~~~~~~v~~ 607 (684)
..+-+ .+. .+++.++..+.+.++.++..|++++.+++........ .++ ..++..+..++..-+.+-..
T Consensus 532 ~~~~~-~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~ 607 (1049)
T 3m1i_C 532 KAHWN-FLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVH 607 (1049)
T ss_dssp HHCHH-HHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHH
T ss_pred HhHHH-HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HHHHHHHHHHHHhCCHHHHH
Confidence 11111 121 3677788888888999999999999999974332211 111 11334444455555555566
Q ss_pred HHHHHHHHHHhccc
Q 035507 608 VCLEGLENILKVGE 621 (684)
Q Consensus 608 ~al~~L~~il~~~~ 621 (684)
.+.+++..++....
T Consensus 608 ~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 608 TFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCC
Confidence 77788877776543
No 95
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.68 E-value=0.0036 Score=74.00 Aligned_cols=332 Identities=12% Similarity=0.084 Sum_probs=186.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCC
Q 035507 259 WSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFL---MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDA 335 (684)
Q Consensus 259 ~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL---~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~ 335 (684)
.+.++..+..|+.++..++..-.... ...++.++..+ .+++ +.++..++|+++.++..-..... .. ..+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~-~~vr~~~~~~l~~~~~~l~~~~~-~l-~~v 530 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISN-VQLADTVMFTIGALSEWLADHPV-MI-NSV 530 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCS-HHHHHHHHHHHHHTHHHHHHCHH-HH-TTT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHhCHH-HH-HHH
Confidence 55678889999999999876644211 12233343333 2334 88999999999998862122222 22 367
Q ss_pred hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHH----HHhcc-CCchHHHHHHHHHHHHhccCCC-
Q 035507 336 VPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLL----AQLNE-HTELSMLRIATTTLSNLCRGKP- 409 (684)
Q Consensus 336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll----~~L~~-~~~~~v~~~a~~~L~nL~~~~~- 409 (684)
++.++..|.+ +.|+..|++++.+++.+. +..+. ..++.++ ..+.. ..+...+..+..+++.++...+
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~---~~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~ 603 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICREC---KYDLP--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV 603 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHHT---GGGCT--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHHH---HHHHH--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence 8999988865 789999999999999643 22222 2344444 34432 2356778888889998886543
Q ss_pred CCChhhhhchHHHHHHHhc----C-CcHHHHH---HHHHHHHhhcc---CCCh------------------HHHHHHHHh
Q 035507 410 RPLFDQVRPALPALAQLIH----S-NDEQVLT---DACWALFGLSG---DRNN------------------DKIQAVIEA 460 (684)
Q Consensus 410 ~~~~~~~~~~l~~L~~lL~----~-~d~~v~~---~al~~L~~L~~---~~~~------------------~~~~~~~~~ 460 (684)
.........+++.+...+. . .+++.+. ..+.+++.+.. ...+ ..... ...
T Consensus 604 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 682 (963)
T 2x19_B 604 EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQ 682 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHH
Confidence 2222333455554444432 2 2343333 33333433320 1100 01111 222
Q ss_pred chHHHHHHhcCC--CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh----ccCCChhHHHHHHHHHHHHhc-
Q 035507 461 GVCGRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL----IHNHKNSIKKEVSWIISNIAC- 533 (684)
Q Consensus 461 g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~~- 533 (684)
.+++.+..++.. .+..+.+.++.+++.++........ ..+|.++..+ .....+ ..++.++.++.
T Consensus 683 ~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~ 753 (963)
T 2x19_B 683 QVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHI 753 (963)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHH
Confidence 355655555532 4567888999999988653322211 2344444333 221122 34445555543
Q ss_pred -CC----hHHHHHHHHhCCHHHHHHHhcc---CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCC-----ChHHHHhhccC
Q 035507 534 -GN----REQIQAVIDAGLIGPLVNLLQN---AEFDIKEEAAWAISNASSRGTHDQIKYLVTEG-----CIKPLCDLLQC 600 (684)
Q Consensus 534 -~~----~~~~~~l~~~g~l~~Li~ll~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g-----~l~~L~~lL~~ 600 (684)
+. ...+..+++. ++..++.++.. ..++++......+..++...... +.... +++.+...+++
T Consensus 754 f~~~~~~~~~~~~~l~~-~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~----~~~~~~~~~~i~~~~~~~l~~ 828 (963)
T 2x19_B 754 FAHEPAHFPPIEALFLL-VTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL----FLCERLDVKAVFQCAVLALKF 828 (963)
T ss_dssp HTTCTTTCHHHHHHHHH-HHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG----GGCTTSCHHHHHHHHHHHTTC
T ss_pred hCCCcchHHHHHHHHHH-HHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH----HcCCcccHHHHHHHHHHHcCC
Confidence 22 1223322222 34555555542 36899999998888887532111 11111 34556667788
Q ss_pred CChHHHHHHHHHHHHHHhcc
Q 035507 601 ADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 601 ~~~~v~~~al~~L~~il~~~ 620 (684)
.++.+...+++.+..++...
T Consensus 829 ~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 829 PEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp SCHHHHHHHHHHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998653
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.0013 Score=65.38 Aligned_cols=188 Identities=14% Similarity=0.126 Sum_probs=127.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc--HHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc-
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP--IEEVI--ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS- 324 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~--~~~ii--~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~- 324 (684)
.+| +-+.|.|.++..|.+|+..+.+++...+.. .+... -....+.+...+.+.+ ..++..|+.++..++....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC-
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhh
Confidence 445 668899999999999999999988765411 11111 1234566677787777 8999999999998876211
Q ss_pred ----hhHHHHHhcCChHHHHH-hcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHH
Q 035507 325 ----ENTKVVIEHDAVPIFVK-LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATT 399 (684)
Q Consensus 325 ----~~~~~i~~~g~i~~Li~-lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~ 399 (684)
.......-..+++.|+. .+.++...++..+..++..++...... .. .+..++..+ .+.++.++..++.
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~ 161 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAAN 161 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHH
Confidence 11112223356788886 478889999999999988887443221 11 234455555 6778888888887
Q ss_pred HHHHhccCC--C-CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507 400 TLSNLCRGK--P-RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446 (684)
Q Consensus 400 ~L~nL~~~~--~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~ 446 (684)
.|..+.... . .........+++.+..++.+.|+.|+..|..++..+-
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 777766542 1 1223344567778888999999999999999987766
No 97
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.21 E-value=0.012 Score=70.15 Aligned_cols=305 Identities=10% Similarity=0.057 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcH-----HHHHH--cCCHHHHHH-hh-----------c-CCCCHHHHHHHHHHHHHHhc
Q 035507 262 DNNLQLEATTQFQKLLSIESMPI-----EEVIE--SGVVPRFVE-FL-----------M-REDYPQLQFQAAWALTNIAS 321 (684)
Q Consensus 262 ~~~~~~~a~~~L~~l~s~~~~~~-----~~ii~--~g~i~~Lv~-lL-----------~-~~~~~~v~~~A~~~L~~l~~ 321 (684)
+++++..|+.+|..+++...++. ..+.. .+++..+.. ++ . +..+.+.....+..+..++.
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~ 326 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLA 326 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 68889999999999988743221 11100 122222222 11 1 11123444445555544433
Q ss_pred C-------CchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCC---CCCCchhHhhcCCHHHHHHH----hcc
Q 035507 322 G-------TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD---SSGCRDLVLSEGALIPLLAQ----LNE 387 (684)
Q Consensus 322 ~-------~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~---~~~~r~~i~~~g~l~~Ll~~----L~~ 387 (684)
. .+.....+ ..+++.++.....++.++...|+..+..++.+ .+..+.... ..+..++.. +..
T Consensus 327 ~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~--~~l~~Lv~~ll~~m~~ 402 (1049)
T 3m1i_C 327 RNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE--EICSQLRLVIIENMVR 402 (1049)
T ss_dssp HHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGH--HHHHHHHHHHHHTCCC
T ss_pred HHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHHHhcCC
Confidence 1 11111111 13466677666677889999999888888762 122222221 233333333 311
Q ss_pred CC------------------ch---HHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc--CCcHHHHHHHHHHHHh
Q 035507 388 HT------------------EL---SMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH--SNDEQVLTDACWALFG 444 (684)
Q Consensus 388 ~~------------------~~---~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L~~ 444 (684)
.. +. ..++.+..+|..++...+ ......+.+.+...+. ..++..++.++++++.
T Consensus 403 ~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~---~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algs 479 (1049)
T 3m1i_C 403 PEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV---IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS 479 (1049)
T ss_dssp CTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 10 11 234455566666663321 1233444455555554 3578899999999999
Q ss_pred hccCCChHHHHHHHHhchHHHHHHhcCC-----CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChh
Q 035507 445 LSGDRNNDKIQAVIEAGVCGRLVELLGH-----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS 519 (684)
Q Consensus 445 L~~~~~~~~~~~~~~~g~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~ 519 (684)
++ .........-.-..+++.+..+... +.+.++..++++++.++..-....+.+. .+++.++..+.++ ++.
T Consensus 480 ia-~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~-~~~ 555 (1049)
T 3m1i_C 480 IS-GTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHET-HEG 555 (1049)
T ss_dssp TT-TSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSS-CHH
T ss_pred Hh-cccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCC-CHH
Confidence 98 5433322211122355555554332 2334444688999877643222222221 3677788888877 899
Q ss_pred HHHHHHHHHHHHhcCChHHHH--------HHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC
Q 035507 520 IKKEVSWIISNIACGNREQIQ--------AVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT 578 (684)
Q Consensus 520 v~~~a~~~L~nl~~~~~~~~~--------~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~ 578 (684)
|+..||+++.+++........ ..+ ..++..+..++...+.+-......+++.++....
T Consensus 556 V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~-~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 556 VQDMACDTFIKIVQKCKYHFVIQQPRESEPFI-QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH-HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 999999999999874322221 111 1245555566665566666777788888866443
No 98
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.15 E-value=0.0021 Score=75.38 Aligned_cols=308 Identities=10% Similarity=0.028 Sum_probs=164.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--chhHHHHHhc
Q 035507 256 AGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGT--SENTKVVIEH 333 (684)
Q Consensus 256 ~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~--~~~~~~i~~~ 333 (684)
....+.++.++..++.++...++- -+...++..+.++.+.++|.. ++++..|+.+|..+.+.. ++.+..++..
T Consensus 200 ~~~~~~~~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~ 274 (980)
T 3ibv_A 200 AYSNAKNYGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNI 274 (980)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence 333457788888899999888763 356777778889999998864 689999999999998743 2333333322
Q ss_pred CChHHHHHhcC--CCChHHHHHHHHHHHHhh------CCCCC-C----chh--HhhcCCHHHHHHHhccCCchHHHHHHH
Q 035507 334 DAVPIFVKLLA--SPSDDVREQAVWALGNVA------ADSSG-C----RDL--VLSEGALIPLLAQLNEHTELSMLRIAT 398 (684)
Q Consensus 334 g~i~~Li~lL~--~~~~~v~~~a~~~L~nLa------~~~~~-~----r~~--i~~~g~l~~Ll~~L~~~~~~~v~~~a~ 398 (684)
=.+...+..+. ..+.++.+..+..+..++ ...+. . +.. -.-.+.++.++.+. .+++.++...++
T Consensus 275 l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~ 353 (980)
T 3ibv_A 275 LNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVF 353 (980)
T ss_dssp HHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTH
T ss_pred HhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHH
Confidence 11222222222 356666554444443332 11210 0 000 01124567777777 445556666555
Q ss_pred HHHHHhccCC---CC--CCh----hhhhchHHHHHHHhcCC-----------c-----HHHHHHHHHHHHhhccCCChHH
Q 035507 399 TTLSNLCRGK---PR--PLF----DQVRPALPALAQLIHSN-----------D-----EQVLTDACWALFGLSGDRNNDK 453 (684)
Q Consensus 399 ~~L~nL~~~~---~~--~~~----~~~~~~l~~L~~lL~~~-----------d-----~~v~~~al~~L~~L~~~~~~~~ 453 (684)
..+..+.... +. ... .....+++.++.-+..+ + .+.|.... ++...+..-.++.
T Consensus 354 ~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~ 432 (980)
T 3ibv_A 354 PFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSL 432 (980)
T ss_dssp HHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHH
Confidence 5555544221 11 111 22344444444444321 1 12333333 2222220111111
Q ss_pred -HHHHHHhchHHHHHHhcC---CCCcccHhHHHHHHHHHHcCChhhHHHH-Hhc----CChHHHHHHhc-----cCCChh
Q 035507 454 -IQAVIEAGVCGRLVELLG---HPSPSVLTPALWTVGNIVMGDDFQTQCI-INH----GAVPCLLALLI-----HNHKNS 519 (684)
Q Consensus 454 -~~~~~~~g~l~~L~~lL~---~~~~~v~~~al~~L~nl~~~~~~~~~~~-i~~----g~l~~L~~lL~-----~~~~~~ 519 (684)
...+.+ -+.+.+.+.+. +.++..++.|+.+++.++.+.......+ -.. .+++.+..++. .+ ++.
T Consensus 433 ~l~~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~ 510 (980)
T 3ibv_A 433 FSSYMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPL 510 (980)
T ss_dssp HHHHHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHH
T ss_pred HHHHHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHH
Confidence 111110 12222333342 2457788999999999987754322111 001 13455555554 45 889
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc------CCHhHHHHHHHHHHHhhcCCC
Q 035507 520 IKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN------AEFDIKEEAAWAISNASSRGT 578 (684)
Q Consensus 520 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~------~~~~v~~~a~~aL~nl~~~~~ 578 (684)
|+..++|+++..+.--.. ....+|.++..+-+ ++..++..|+.++.+++....
T Consensus 511 V~~~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 511 VQLLYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 999999999998762111 12345555555444 567899999999999987543
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.10 E-value=0.00089 Score=70.11 Aligned_cols=243 Identities=18% Similarity=0.190 Sum_probs=152.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc--HHHHHHcCCHHHHHHhhc---------CCCCHHHHHHHHHHHH
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP--IEEVIESGVVPRFVEFLM---------REDYPQLQFQAAWALT 317 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~--~~~ii~~g~i~~Lv~lL~---------~~~~~~v~~~A~~~L~ 317 (684)
+..+.++..|-+..+++|.-|+.+||.++...... +..-....+.-+++-.+. +..-..||+.|+.+|+
T Consensus 174 qfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 174 DFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp GTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 36788899999999999999999999998665310 000001123334443332 1112479999999999
Q ss_pred HHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHh-hcCCHHHHHHHhccCCchHHHHH
Q 035507 318 NIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVL-SEGALIPLLAQLNEHTELSMLRI 396 (684)
Q Consensus 318 ~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~-~~g~l~~Ll~~L~~~~~~~v~~~ 396 (684)
.+ ..-+.. ..++..++..+..+..+++..++-.|..+ .+.+. -.++++.++..| .+.|.+++..
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-------~DLL~~Ld~Vv~aVL~GL-~D~DDDVRAV 318 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-------KEFVEDKDGLCRKLVSLL-SSPDEDIKLL 318 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-------GGGCCCHHHHHHHHHHHT-TCSSHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-------HHHHHHHHHHHHHHHhhc-CCcccHHHHH
Confidence 99 644433 34566666666788999999999999988 12221 134566777777 6778899999
Q ss_pred HHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCc--HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCC
Q 035507 397 ATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSND--EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS 474 (684)
Q Consensus 397 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~ 474 (684)
|+.+|.-++ .+ .....++..+-..|.+.| ..........|+.++ ..+.. ...+...+|+|..++.|.-
T Consensus 319 AAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~-s~p~~---a~~dp~LVPRL~PFLRHtI 388 (800)
T 3oc3_A 319 SAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIY-RENPE---LSIPPERLKDIFPCFTSPV 388 (800)
T ss_dssp HHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHH-HHCTT---CCCCSGGGGGTGGGGTCSS
T ss_pred HHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH-cCCcc---cccChHHHHHHHhhhcCCc
Confidence 999999888 11 234556666666665432 111222333333333 11110 0112378999999999999
Q ss_pred cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHH-HhccCCChhHHHHHHHHH
Q 035507 475 PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA-LLIHNHKNSIKKEVSWII 528 (684)
Q Consensus 475 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~-lL~~~~~~~v~~~a~~~L 528 (684)
..||.++++++..+. ... ++..+.+ +|-.. +++++..+..+-
T Consensus 389 TSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~-neeIl~lS~~VW 431 (800)
T 3oc3_A 389 PEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEE-KDEIREMAIKLL 431 (800)
T ss_dssp HHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 999999999997776 221 2233333 34444 677777665444
No 100
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.10 E-value=0.037 Score=64.90 Aligned_cols=343 Identities=12% Similarity=0.053 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHH-HhcCC----hHHHHHhcC-----CCChHHHHHHHHHHHHhhCCCCCCchhHhhcC
Q 035507 307 QLQFQAAWALTNIASGTSENTKVV-IEHDA----VPIFVKLLA-----SPSDDVREQAVWALGNVAADSSGCRDLVLSEG 376 (684)
Q Consensus 307 ~v~~~A~~~L~~l~~~~~~~~~~i-~~~g~----i~~Li~lL~-----~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g 376 (684)
...+.|+.+|+.++.+-......+ -.... ++.+..++. .+++.|+..++++++..+..-.. ...
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~~ 531 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ESA 531 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CCT
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cch
Confidence 567889999999998644322111 01122 344444544 57899999999999998854322 123
Q ss_pred CHHHHHHHhcc-----CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC-----CcH--------------
Q 035507 377 ALIPLLAQLNE-----HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS-----NDE-------------- 432 (684)
Q Consensus 377 ~l~~Ll~~L~~-----~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-----~d~-------------- 432 (684)
.+++++..+.. +++..++..|+.++.++|+.-...-......++..+..++.. .+.
T Consensus 532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 611 (980)
T 3ibv_A 532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNS 611 (980)
T ss_dssp THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTT
T ss_pred hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccC
Confidence 46777777654 456789999999999999875332223334455555555542 111
Q ss_pred --HHHHHHHHHHHhhcc--CCChHHHHHHHHhchHHH----HHHhcCCCCc--c---cHhHHHHHHHHHHcCChhh----
Q 035507 433 --QVLTDACWALFGLSG--DRNNDKIQAVIEAGVCGR----LVELLGHPSP--S---VLTPALWTVGNIVMGDDFQ---- 495 (684)
Q Consensus 433 --~v~~~al~~L~~L~~--~~~~~~~~~~~~~g~l~~----L~~lL~~~~~--~---v~~~al~~L~nl~~~~~~~---- 495 (684)
+-+.....+++.+.. ..+.+.....++. +++. +-..+..... . -....+.+++.++.+-+..
T Consensus 612 ~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~-ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~ 690 (980)
T 3ibv_A 612 DFNSQLYLFETVGVLISSGNLTPEEQALYCDS-LINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEE 690 (980)
T ss_dssp THHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CC
T ss_pred CchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 123444555555441 2233333333332 3333 3333432211 1 1224567778888664321
Q ss_pred ---HHHHHhcCChHHHHHHhc--cCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CHhHHHHHHHH
Q 035507 496 ---TQCIINHGAVPCLLALLI--HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EFDIKEEAAWA 569 (684)
Q Consensus 496 ---~~~~i~~g~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~~v~~~a~~a 569 (684)
...+. .+.+.+...+. .. +..+|..++.++..+...-...+. ..+|.++..+-.. +..-....+|.
T Consensus 691 ~p~~~~f~--~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~~-----p~lp~~i~~ll~~~~~~e~~~fL~l 762 (980)
T 3ibv_A 691 VAWLASFN--KASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDML-----PKVPQLISILLNSIDMNELVDVLSF 762 (980)
T ss_dssp CSHHHHHH--HHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHHT-----TTHHHHHHHHHHHCCTTTHHHHHHH
T ss_pred CcHHHHHH--HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11111 35556666665 33 788999999999999874333322 3567777765432 44445567788
Q ss_pred HHHhhcCCCHHHHHHHHH--CCChHHHHhhccCCC---------hHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHH
Q 035507 570 ISNASSRGTHDQIKYLVT--EGCIKPLCDLLQCAD---------PKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQ 638 (684)
Q Consensus 570 L~nl~~~~~~~~~~~l~~--~g~l~~L~~lL~~~~---------~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~ 638 (684)
++.++.....+....+.+ .-++..+..+|..+. ..+++.-+..+..++..+-...-. ...| ..
T Consensus 763 ~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~----s~~n--~~ 836 (980)
T 3ibv_A 763 ISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILF----TEEN--QV 836 (980)
T ss_dssp HHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGG----SHHH--HT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhc----CCcc--hH
Confidence 887775333222222111 113445555555422 235555556666666643211100 0000 00
Q ss_pred HHHHhchHHHHHHh-hcCCCHHHHHHHHHHHHHhc
Q 035507 639 LVEEAEGLEKIENL-QSHDNNEIHEKSVKILETYW 672 (684)
Q Consensus 639 ~i~~~g~~~~L~~L-~~~~~~~i~~~a~~ii~~~f 672 (684)
.++ ..+..+... ..++++...+.|..++.++.
T Consensus 837 ~l~--~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v 869 (980)
T 3ibv_A 837 YFD--PLINSILHFANLVGEPATQKSSIALVSKMV 869 (980)
T ss_dssp THH--HHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 010 123333333 34578888999999988874
No 101
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.89 E-value=0.2 Score=49.25 Aligned_cols=372 Identities=16% Similarity=0.152 Sum_probs=212.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHH-HcCCHHHHHHhhcCCC------CHHHHH------HHHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVI-ESGVVPRFVEFLMRED------YPQLQF------QAAWA 315 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii-~~g~i~~Lv~lL~~~~------~~~v~~------~A~~~ 315 (684)
.+-.+.+++-|.|..++-.-.|.=.. ..++ |+...++ -.|++-.--+++.-++ ++++.. .+. -
T Consensus 189 til~~lRFiISKDt~lKd~~IWn~~~--q~d~~PP~s~li~Lkgv~~~s~~~~~~~dpet~~qNpel~~LiQVvtR~F-D 265 (619)
T 3c2g_A 189 AIFIIFRFIISKDTRLKDYFIWNNNP--HDQPPPPTGLIIKLNAVMIGSYRLIAGQNPETLPQNPELAHLIQVIIRTF-D 265 (619)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCC--TTSCCCTTSHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHH-H
T ss_pred hhhhhhHhhhcccceeccceeeCCcc--ccCCCCChhHHHHHHHHHHhhHHhhcCCChhcccCCHHHHHHHHHHHHHH-H
Confidence 34566777888887666554442211 1111 3333333 3344444445554332 233322 222 3
Q ss_pred HHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHH
Q 035507 316 LTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLR 395 (684)
Q Consensus 316 L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~ 395 (684)
|.++..+++...+-++..+++..+.....-++.++.+.....|..++....-+. .--...++.++..+.-+++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhccCCCcceEE
Confidence 456666788899999999999999999999999999999999999864432211 112346788888888888999999
Q ss_pred HHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcC-------CcHHHHHHHHHHHHhhcc------C-------------
Q 035507 396 IATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHS-------NDEQVLTDACWALFGLSG------D------------- 448 (684)
Q Consensus 396 ~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~al~~L~~L~~------~------------- 448 (684)
.....|+|....+ +........++++.+-..+.. .+..-+..+|.+++|-.. -
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 9999999999887 656666678899988877642 233334444444443220 0
Q ss_pred CCh--HHHHHHHHhchHHHHHHhcCCCCc------ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhH
Q 035507 449 RNN--DKIQAVIEAGVCGRLVELLGHPSP------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSI 520 (684)
Q Consensus 449 ~~~--~~~~~~~~~g~l~~L~~lL~~~~~------~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v 520 (684)
+.. .+...+++.+++.+|+.+|+-+.. ++|...++..--+.....--. . .+..+..+.....+
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pk-----d----~~l~VtDd~rk~NL 494 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPK-----D----GVLNVIDENRKENL 494 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCC-----T----TGGGCCCTTTCCCH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCch-----h----hhccccchhhhhhh
Confidence 111 122234555677778777765432 233333443322222111000 0 11111122112233
Q ss_pred HHHHHHHHHHH----hc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHH
Q 035507 521 KKEVSWIISNI----AC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLC 595 (684)
Q Consensus 521 ~~~a~~~L~nl----~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~ 595 (684)
.-..|-+++.. .. ...+..+.+++. .+..|+.++.....+. +.+..+.. +..=.
T Consensus 495 vGHIciA~sWa~~Q~tNertqdTkqQLiER-~fSLL~~LmEQc~~E~--qVAh~~Ys------------------IsCPL 553 (619)
T 3c2g_A 495 IGHICAAYSWVFRQPNNTRTQSTKQQLVER-TISLLLVLMEQCGAEK--EVAQYSYS------------------IDCPL 553 (619)
T ss_dssp HHHHHHHHHHHHHSCCCTTTHHHHHHHHHH-HHHHHHHHHHHTTCHH--HHHHTTTT------------------SCCGG
T ss_pred HHHHHHHHHHhhcCccccchhhHHHHHHHH-HHHHHHHHHHHhhhHH--HHHhheee------------------ccCch
Confidence 33334333333 22 355666777765 6777777776532221 11111111 11223
Q ss_pred hhccCC--ChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507 596 DLLQCA--DPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY 671 (684)
Q Consensus 596 ~lL~~~--~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~ 671 (684)
++|+.. .|.....++..-.+|++..+-.... . .---..++.+.+|.|++|.+.|..++.+|
T Consensus 554 nlLn~nQ~KP~FI~NVL~VcDKILeHcP~~Ad~--------------W-~i~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 554 NLLNGNQVKPTFIHNVLVVCDKILEHCPTRADI--------------W-TIDRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp GGGSSCCCCHHHHHHHHHHHHHHHHHCTTHHHH--------------S-CCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred hhhcccccChHHHHHHHHHHHHHHHhCcchhcc--------------c-eechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 556543 5777888888888888876543210 0 00123577888999999999999999876
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.017 Score=57.12 Aligned_cols=186 Identities=15% Similarity=0.088 Sum_probs=125.3
Q ss_pred HHHHhccCCchHHHHHHHHHHHHhccCCCCC-----ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh----
Q 035507 381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRP-----LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN---- 451 (684)
Q Consensus 381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~-----~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~---- 451 (684)
+-..| .+.+-..+..++..+..+....+.. .........+.+...+.+.+..++..++.++..++ ....
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~-~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLI-DAFASSSL 91 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHH-TTCC---C
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-HHhhhhhc
Confidence 44555 6777788888888888776654211 11123456677778888999999999999998877 4321
Q ss_pred -HHHHHHHHhchHHHHHH-hcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507 452 -DKIQAVIEAGVCGRLVE-LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS 529 (684)
Q Consensus 452 -~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 529 (684)
.......-..+++.|+. .+.+....++..|..++..++........ +++.+...+.+. ++.++.+++..|.
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~K-npkv~~~~l~~l~ 164 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKK-LPKLIAAAANCVY 164 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCS-CHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhcc-CHHHHHHHHHHHH
Confidence 11111222356777775 48888889999999988887754321111 345666777888 9999999998888
Q ss_pred HHhc--CChH-HHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcC
Q 035507 530 NIAC--GNRE-QIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR 576 (684)
Q Consensus 530 nl~~--~~~~-~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~ 576 (684)
.+.. |... .....+. .+++.+..++.+.+..||..|..++..+...
T Consensus 165 ~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 8764 2111 1122222 2566778888999999999999999988764
No 103
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.73 E-value=0.054 Score=51.25 Aligned_cols=186 Identities=10% Similarity=0.088 Sum_probs=128.0
Q ss_pred cHHHHHHHHHHHHhhccCCChHHHHHHHHh-chHHHHHHhc-------CCCCc-----ccHhHHHHHHHHHHcCChhhHH
Q 035507 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEA-GVCGRLVELL-------GHPSP-----SVLTPALWTVGNIVMGDDFQTQ 497 (684)
Q Consensus 431 d~~v~~~al~~L~~L~~~~~~~~~~~~~~~-g~l~~L~~lL-------~~~~~-----~v~~~al~~L~nl~~~~~~~~~ 497 (684)
+++.++.|+..|+.-- +..++....+..+ |.+..|++=+ ..+.- .-...|+..+..++. +++.+.
T Consensus 14 ~p~~Re~AL~eLsk~R-e~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~ 91 (268)
T 2fv2_A 14 SPETRENALLELSKKR-ESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRS 91 (268)
T ss_dssp STTTHHHHHHHHHHHT-TTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHH
T ss_pred CchhHHHHHHHHHHhh-hccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-Ccchhh
Confidence 4556888888877755 5555666666665 6666654332 22211 112345555566665 455777
Q ss_pred HHHhcCChHHHHHHhccCC----ChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHH
Q 035507 498 CIINHGAVPCLLALLIHNH----KNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN 572 (684)
Q Consensus 498 ~~i~~g~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~n 572 (684)
.++++.+.-.|..+|.... -+.+|-.+..+++.+.. ++++.+.++++.+++|..++.++.++.-.|..|...+..
T Consensus 92 ~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqK 171 (268)
T 2fv2_A 92 AFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQK 171 (268)
T ss_dssp HHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 8899998888888885542 24688888999999886 688899999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHH--------CCChHHHHh-hccCCChHHHHHHHHHHHHHHhcc
Q 035507 573 ASSRGTHDQIKYLVT--------EGCIKPLCD-LLQCADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 573 l~~~~~~~~~~~l~~--------~g~l~~L~~-lL~~~~~~v~~~al~~L~~il~~~ 620 (684)
+.. +.....|+.. ..++..++. +.+.+++.+.+.++.+..++.+..
T Consensus 172 IL~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 172 ILL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred Hhc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 986 3343333221 123333333 345678889988888887776653
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.72 E-value=0.025 Score=54.79 Aligned_cols=132 Identities=10% Similarity=0.027 Sum_probs=96.4
Q ss_pred CCchHHHHHHHHHHHHh----ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchH
Q 035507 388 HTELSMLRIATTTLSNL----CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVC 463 (684)
Q Consensus 388 ~~~~~v~~~a~~~L~nL----~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l 463 (684)
+++..+...++.+|..+ ......-.......++|.|+.-+.+..+.++..+-.++..+. . ..-...++
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~-~-------v~~~~~v~ 169 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS-D-------VVGPLKMT 169 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH-H-------HHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-H-------HCCHHHHH
Confidence 45666666666666554 333233333445778999999999999999998888876666 1 11222477
Q ss_pred HHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCCh---HHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAV---PCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 464 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
+.+..-+.+.+...|..++..++.+....... ....+ |.+.+++.++ +..||..|..++..+-.
T Consensus 170 ~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 170 PMLLDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999987433211 23478 9999999998 99999999999887654
No 105
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.71 E-value=0.017 Score=56.02 Aligned_cols=181 Identities=15% Similarity=0.074 Sum_probs=119.4
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh----hhHH
Q 035507 422 ALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD----FQTQ 497 (684)
Q Consensus 422 ~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~----~~~~ 497 (684)
.+...+.+.|..-...++..|.... ....+.....++. +++-+.-.+-+.+..+...++.+|..+...-. ....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l-~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLA-DTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHH-HHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHh-hhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 4555566677777777777776655 3222221111111 23333323446788888888888877642110 0111
Q ss_pred HHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcC
Q 035507 498 CIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR 576 (684)
Q Consensus 498 ~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~ 576 (684)
.- ..-++|.|+.-+.++ ...+|..+-.++..+.. .++. .+++.+.+-+.+.+..+|.+++..+..+...
T Consensus 128 ~e-a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 128 EE-VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp HH-HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 10 113689999999888 88899888887776654 2222 2567778888899999999999999988752
Q ss_pred CCHHHHHHHHHCCCh---HHHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507 577 GTHDQIKYLVTEGCI---KPLCDLLQCADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 577 ~~~~~~~~l~~~g~l---~~L~~lL~~~~~~v~~~al~~L~~il~~~ 620 (684)
.... ....+ +.+..++.+.|..|+..|+.++..+....
T Consensus 198 ~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 198 AGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 2111 23468 99999999999999999999999887764
No 106
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.47 E-value=0.11 Score=51.34 Aligned_cols=201 Identities=12% Similarity=0.095 Sum_probs=140.2
Q ss_pred HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch----hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD----LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404 (684)
Q Consensus 329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~----~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL 404 (684)
.+...+.+..|+..|..=+.+.|..+..+..++.+.....+- .+.. -...+..++....++++.-.+...|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 345568889999999888899999999999999876644322 2222 1222222332333455555666666666
Q ss_pred ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh---chHHHHHHhcCCCCcccHhHH
Q 035507 405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA---GVCGRLVELLGHPSPSVLTPA 481 (684)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~a 481 (684)
++...-.......+.+-.+.+.+..++-++..+|..++..+. .........++.. .++...-.+|.+++--++..+
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelL-t~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLL-TRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHH-HSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHH-hccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 665432222333455667777888899999999999999887 5544444445544 367778889999999999999
Q ss_pred HHHHHHHHcCChh--h-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 482 LWTVGNIVMGDDF--Q-TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 482 l~~L~nl~~~~~~--~-~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
+..||.+...... . ++.+-+..-+..++.+|.+. +..++-+|..+.--+++
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 9999999865432 1 22333445688999999999 99999999999888876
No 107
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.33 E-value=0.38 Score=47.66 Aligned_cols=199 Identities=12% Similarity=0.111 Sum_probs=143.2
Q ss_pred HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhh---h---hchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 035507 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQ---V---RPALPALAQLIHSNDEQVLTDACWALFGL 445 (684)
Q Consensus 372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~---~---~~~l~~L~~lL~~~d~~v~~~al~~L~~L 445 (684)
+...+.+..|+..| ..-+-+.++.++...+++.+......... . ..++..|+..- +++++...+=..|...
T Consensus 74 i~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRec 150 (341)
T 1upk_A 74 LYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHH
Confidence 34556777888888 77788999999999999998873332222 1 22222222222 2344444444445554
Q ss_pred ccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc---CChHHHHHHhccCCChhHHH
Q 035507 446 SGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH---GAVPCLLALLIHNHKNSIKK 522 (684)
Q Consensus 446 ~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~---g~l~~L~~lL~~~~~~~v~~ 522 (684)
+ ..+.....++..+.+..+...++.++-++...|..++..+.+.+.......+.. .++..+-++|.++ +.-.|+
T Consensus 151 i--r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkR 227 (341)
T 1upk_A 151 I--RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR 227 (341)
T ss_dssp H--TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred H--HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHH
Confidence 4 556667778888888899999999999999999999999988777665555543 3577888889998 999999
Q ss_pred HHHHHHHHHhcC--ChHHHHHHH-HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcC
Q 035507 523 EVSWIISNIACG--NREQIQAVI-DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR 576 (684)
Q Consensus 523 ~a~~~L~nl~~~--~~~~~~~l~-~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~ 576 (684)
.+...|+.+... +.......+ +..-+..++.+|.+.+..++-+|-.++.-++..
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 999999999763 333333222 445688999999999999999999988877653
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.32 E-value=0.72 Score=54.13 Aligned_cols=346 Identities=11% Similarity=0.100 Sum_probs=178.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC--C--HHHHHHHHHHHHHHhcCCchhHHHHHhcCChH
Q 035507 262 DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED--Y--PQLQFQAAWALTNIASGTSENTKVVIEHDAVP 337 (684)
Q Consensus 262 ~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~--~--~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~ 337 (684)
++.....++++++.++..-.+..+.-.=..+++.|+.+..+.. + +.++...+|+++..+.--..+.. +. ...+.
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~-~L-~~vl~ 569 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK-FL-KTVVN 569 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HH-HHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH-HH-HHHHH
Confidence 4888889999999986433322232222346677777765442 1 22344445677665441111111 11 13467
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh--cC----CHHHHHHHhc---cCCchHHHHHHHHHHHHhccCC
Q 035507 338 IFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS--EG----ALIPLLAQLN---EHTELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 338 ~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~--~g----~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~~~ 408 (684)
.+++.+..+++.|++.|+.++..+|.+. ++.+.. .| .+..++..+. ..-+++-......+++.+....
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C---~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~ 646 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKC---RRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQ 646 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHT---GGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHH---HHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 7778888889999999999999999764 333322 12 2344444332 2234555666777788888776
Q ss_pred CCCC--hhhhhchHHHHHH----Hhc--------CCcHH---HHHHHHHHHHhhccCC-C---hHHHHHHHHh--chHHH
Q 035507 409 PRPL--FDQVRPALPALAQ----LIH--------SNDEQ---VLTDACWALFGLSGDR-N---NDKIQAVIEA--GVCGR 465 (684)
Q Consensus 409 ~~~~--~~~~~~~l~~L~~----lL~--------~~d~~---v~~~al~~L~~L~~~~-~---~~~~~~~~~~--g~l~~ 465 (684)
|... .......++.... ++. -.|++ .....+.+...++ .+ . ......+... ++...
T Consensus 647 p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~-~~~g~~f~~~~~~i~~~~l~~y~~ 725 (1073)
T 3gjx_A 647 TDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRAC-KAVGHPFVIQLGRIYLDMLNVYKC 725 (1073)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHH-HHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHH-hhcchhHHHHHHHHHHHHHHHHHH
Confidence 5432 2222333333222 221 01332 2233333332222 10 0 0111111000 00000
Q ss_pred HHHhc-----CCC-----Cc------ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc----c----CCChhHH
Q 035507 466 LVELL-----GHP-----SP------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI----H----NHKNSIK 521 (684)
Q Consensus 466 L~~lL-----~~~-----~~------~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~----~----~~~~~v~ 521 (684)
.-+.+ .++ .+ .++...++.+.......+ ..+ .+...++|.|+..+- . ..++.+-
T Consensus 726 ~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~-~~~-~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL 803 (1073)
T 3gjx_A 726 LSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSN-DPQ-MVAENFVPPLLDAVLIDYQRNVPAAREPEVL 803 (1073)
T ss_dssp HHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCS-CHH-HHHHHTSHHHHHHTHHHHHHSCGGGCCTHHH
T ss_pred HHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCC-CHH-HHHHHhHHHHHHHHHHHHhcCCcccccHHHH
Confidence 00111 001 11 133334444444443332 222 222356666665441 1 1155666
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC---CHhHHHHHHHHHHHhhcCC-------CHHHHHHHHHCCCh
Q 035507 522 KEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA---EFDIKEEAAWAISNASSRG-------THDQIKYLVTEGCI 591 (684)
Q Consensus 522 ~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~g~l 591 (684)
.-.+-.+..+...-.+.+..++++ ++..=++++..+ .|+.|..--..+.++...+ .+++.+. ++
T Consensus 804 ~l~s~iv~k~~~~~~~~~~~il~~-vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~-----~i 877 (1073)
T 3gjx_A 804 STMAIIVNKLGGHITAEIPQIFDA-VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKL-----VL 877 (1073)
T ss_dssp HHHHHHHHHHGGGTGGGHHHHHHH-HHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHH-----HH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHH-HHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHH-----HH
Confidence 666666666665545555555554 566666777643 6788777666666555422 3444444 46
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507 592 KPLCDLLQCADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 592 ~~L~~lL~~~~~~v~~~al~~L~~il~~~~ 621 (684)
+.++-.+++..+++-..++.++..++....
T Consensus 878 ~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~ 907 (1073)
T 3gjx_A 878 DSIIWAFKHTMRNVADTGLQILFTLLQNVA 907 (1073)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHHhh
Confidence 677888899999999999999999887644
No 109
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.22 E-value=0.028 Score=59.10 Aligned_cols=246 Identities=15% Similarity=0.071 Sum_probs=156.4
Q ss_pred ChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC--CchhHhhcCCHHHHHHHhc---------cCCchHHHHHHHHHHHH
Q 035507 335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSG--CRDLVLSEGALIPLLAQLN---------EHTELSMLRIATTTLSN 403 (684)
Q Consensus 335 ~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~--~r~~i~~~g~l~~Ll~~L~---------~~~~~~v~~~a~~~L~n 403 (684)
....|+.-|-++..++|-.|+.+|..+...... .|.........-.++-.+. +..-..+++.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 456677777789999999999999998743321 0110011112222222221 11234799999999999
Q ss_pred hccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHH
Q 035507 404 LCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALW 483 (684)
Q Consensus 404 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~ 483 (684)
+ ..-+.. ..++..++..+..+..+++..++-.|.|+. +--.. -.++++.++..|.+.+++|+..|+.
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~-DLL~~------Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK-EFVED------KDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG-GGCCC------HHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH-HHHHH------HHHHHHHHHhhcCCcccHHHHHHHH
Confidence 9 554443 344444555557888999999999999985 32221 2367889999999999999999999
Q ss_pred HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChh-HHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhH
Q 035507 484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS-IKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDI 562 (684)
Q Consensus 484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~-v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v 562 (684)
+|..++ .+..... ++..+-..|.+-++-. -.......|+.++...+. ...+...+|.|...+.+.-..|
T Consensus 322 tLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 322 LLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred Hhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHH
Confidence 999988 2222322 3344444444321211 122334455555543211 0112368999999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHH
Q 035507 563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614 (684)
Q Consensus 563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 614 (684)
|..++.++..+. .....+. .+.++|-..+++++..+.++..
T Consensus 392 R~AVL~TL~tfL---~~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLS---EESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCC---CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 999999998887 2232222 2334566788888888888775
No 110
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.22 E-value=0.69 Score=54.30 Aligned_cols=357 Identities=11% Similarity=0.096 Sum_probs=182.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC--------c-----HHHHHHc--CCHHHHHHhhcCCCCHHHHHHHHH
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESM--------P-----IEEVIES--GVVPRFVEFLMREDYPQLQFQAAW 314 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~--------~-----~~~ii~~--g~i~~Lv~lL~~~~~~~v~~~A~~ 314 (684)
.++.+++.++++ +.....++..|+.+...-.. . .+.+... .+++.+...|....++++...++.
T Consensus 151 fi~dLv~~~~~~-~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~ 229 (1073)
T 3gjx_A 151 FISDIVGASRTS-ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLE 229 (1073)
T ss_dssp HHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 466777766543 34445556666554432000 0 1112221 133334444544444788888889
Q ss_pred HHHHHhcCCchhHHHHHhcCChHHHH-HhcCCCChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHH----Hh---
Q 035507 315 ALTNIASGTSENTKVVIEHDAVPIFV-KLLASPSDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLA----QL--- 385 (684)
Q Consensus 315 ~L~~l~~~~~~~~~~i~~~g~i~~Li-~lL~~~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~----~L--- 385 (684)
+|....+=- ....+++.+.++.++ .+| +++.++..|+.+|..+.+.. +.+.+.+.. ....++. .+
T Consensus 230 ~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~--lf~~~~~~i~~ilp~~ 303 (1073)
T 3gjx_A 230 TLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFET--LFTLTMMQLKQMLPLN 303 (1073)
T ss_dssp HHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHH--HHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHH--HHHHHHHHHHHhcCCc
Confidence 999888722 345677888888884 666 45789999999999998653 221122110 1111111 11
Q ss_pred ---------ccCCchHHHHHHHHHHHHhccCC------CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc---
Q 035507 386 ---------NEHTELSMLRIATTTLSNLCRGK------PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSG--- 447 (684)
Q Consensus 386 ---------~~~~~~~v~~~a~~~L~nL~~~~------~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~--- 447 (684)
....|.+.....+..+..+...- .+........++..++.+...+|.++..-++..=..+..
T Consensus 304 ~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~ 383 (1073)
T 3gjx_A 304 TNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELY 383 (1073)
T ss_dssp SCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 12234455565666655444332 001112223344455555667777776654433222210
Q ss_pred CCC------------------hHHHHHHH--HhchHHHHHHhcCCCCc----------ccHh-----------HHHH-HH
Q 035507 448 DRN------------------NDKIQAVI--EAGVCGRLVELLGHPSP----------SVLT-----------PALW-TV 485 (684)
Q Consensus 448 ~~~------------------~~~~~~~~--~~g~l~~L~~lL~~~~~----------~v~~-----------~al~-~L 485 (684)
... ........ -..+...++.-+..+.+ .+|. .+++ ++
T Consensus 384 ~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L 463 (1073)
T 3gjx_A 384 RESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETL 463 (1073)
T ss_dssp HHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHH
Confidence 000 01111000 01223333444443321 0111 1122 33
Q ss_pred HHHHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChH-HHHHHHHhCCHHHHHHHhccC---C-
Q 035507 486 GNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNRE-QIQAVIDAGLIGPLVNLLQNA---E- 559 (684)
Q Consensus 486 ~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~g~l~~Li~ll~~~---~- 559 (684)
..++.-....+..+ .++.+.+.+..+ .+......++|+++.|+..-.+ .-..++ ..+++.|+.+.... +
T Consensus 464 ~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~~~kd~ 538 (1073)
T 3gjx_A 464 VYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQKRGKDN 538 (1073)
T ss_dssp HHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHSCSHHH
T ss_pred HHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccccccch
Confidence 33433222222211 234444444432 2678899999999999854222 111222 23677777776544 2
Q ss_pred -HhHHHHHHHHHHHhhcC--CCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507 560 -FDIKEEAAWAISNASSR--GTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE 623 (684)
Q Consensus 560 -~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~ 623 (684)
..++...+|+++..... .+++..+. ++..|.+.+.+.++.++..|..++..++..+...
T Consensus 539 k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 539 KAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred hHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23455566888876553 13333332 5677788888889999999999999999877653
No 111
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.82 E-value=0.0049 Score=59.39 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=84.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhh
Q 035507 337 PIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQV 416 (684)
Q Consensus 337 ~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~ 416 (684)
+.|..++.++++.||..++..+ . + . ++..+.++++..++..+... +.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l---~---~------------~-~L~~L~~D~d~~VR~~aA~~---l~----------- 147 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL---P---L------------E-QLEQMAADRDYLVRAYVVQR---IP----------- 147 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS---C---T------------G-GGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---C---H------------H-HHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence 3456667777777777766632 0 0 0 11223366677777766652 10
Q ss_pred hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhH
Q 035507 417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT 496 (684)
Q Consensus 417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 496 (684)
.+.+..++.++++.|+..+... +. .+.+..++.++++.||..++..+
T Consensus 148 ---~~~l~~l~~D~d~~VR~~aa~~---l~----------------~~ll~~ll~D~d~~VR~aaa~~l----------- 194 (244)
T 1lrv_A 148 ---PGRLFRFMRDEDRQVRKLVAKR---LP----------------EESLGLMTQDPEPEVRRIVASRL----------- 194 (244)
T ss_dssp ---GGGGGGTTTCSCHHHHHHHHHH---SC----------------GGGGGGSTTCSSHHHHHHHHHHC-----------
T ss_pred ---HHHHHHHHcCCCHHHHHHHHHc---CC----------------HHHHHHHHcCCCHHHHHHHHHhC-----------
Confidence 1123355667777777777664 22 13344667777888887777542
Q ss_pred HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHH
Q 035507 497 QCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAI 570 (684)
Q Consensus 497 ~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL 570 (684)
..+.|..++.++ ++.||..++..++ .+.|..+ .+.++.|+..|...|
T Consensus 195 -------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp -------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred -------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 124566777777 8888888877643 2444444 777888888877554
No 112
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.55 E-value=0.0051 Score=59.26 Aligned_cols=164 Identities=14% Similarity=0.145 Sum_probs=110.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507 253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE 332 (684)
Q Consensus 253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~ 332 (684)
.+..++.++++.++..++..+ ..+.|..++++++ +.+|..++..+ .
T Consensus 78 ~l~~L~~D~~~~VR~~aA~~L------------------~~~~L~~ll~D~d-~~VR~~aA~~l---~------------ 123 (244)
T 1lrv_A 78 ALTPLIRDSDEVVRRAVAYRL------------------PREQLSALMFDED-REVRITVADRL---P------------ 123 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTS------------------CSGGGGGTTTCSC-HHHHHHHHHHS---C------------
T ss_pred HHHHHccCcCHHHHHHHHHHC------------------CHHHHHHHHcCCC-HHHHHHHHHhC---C------------
Confidence 344555666777777766532 0134667777777 78888877742 1
Q ss_pred cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCC
Q 035507 333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL 412 (684)
Q Consensus 333 ~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~ 412 (684)
.+.|..++++++..||..++.. +. ..++..+.++++..++..++..+ .
T Consensus 124 ---~~~L~~L~~D~d~~VR~~aA~~---l~----------------~~~l~~l~~D~d~~VR~~aa~~l---~------- 171 (244)
T 1lrv_A 124 ---LEQLEQMAADRDYLVRAYVVQR---IP----------------PGRLFRFMRDEDRQVRKLVAKRL---P------- 171 (244)
T ss_dssp ---TGGGGGGTTCSSHHHHHHHHHH---SC----------------GGGGGGTTTCSCHHHHHHHHHHS---C-------
T ss_pred ---HHHHHHHHcCCCHHHHHHHHHh---cC----------------HHHHHHHHcCCCHHHHHHHHHcC---C-------
Confidence 2345667888999999988863 21 11233444788999999887741 1
Q ss_pred hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507 413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD 492 (684)
Q Consensus 413 ~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 492 (684)
.+.+..++.++++.|+..+... +. .+.|..++.++++.||..+...++
T Consensus 172 -------~~ll~~ll~D~d~~VR~aaa~~---l~----------------~~~L~~Ll~D~d~~VR~~aa~~l~------ 219 (244)
T 1lrv_A 172 -------EESLGLMTQDPEPEVRRIVASR---LR----------------GDDLLELLHDPDWTVRLAAVEHAS------ 219 (244)
T ss_dssp -------GGGGGGSTTCSSHHHHHHHHHH---CC----------------GGGGGGGGGCSSHHHHHHHHHHSC------
T ss_pred -------HHHHHHHHcCCCHHHHHHHHHh---CC----------------HHHHHHHHcCCCHHHHHHHHHcCC------
Confidence 1344467788999999988765 23 246788899999999999888754
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507 493 DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII 528 (684)
Q Consensus 493 ~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L 528 (684)
.+.|..+ .++ ++.||..|...|
T Consensus 220 ------------~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 ------------LEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp ------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred ------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence 2445455 666 899998887554
No 113
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.46 E-value=0.16 Score=49.98 Aligned_cols=164 Identities=15% Similarity=0.180 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc
Q 035507 434 VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI 513 (684)
Q Consensus 434 v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~ 513 (684)
+...+...|.-+. .+...++-+++.+++..+...++.++.++....+..+-..+.... ....- -...+|.++..+.
T Consensus 259 VvtR~FDLL~LLm--HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~-L~e~LPFi~~~i~ 334 (619)
T 3c2g_A 259 VIIRTFDLLGLLL--HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTP-LENILPFLLRLIE 334 (619)
T ss_dssp HHHHHHHHHHHHC--CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSC-CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhcc-ccccchHHHHHhc
Confidence 4445555555555 677888889999999999999999999999999999988765432 11100 1246788888885
Q ss_pred cCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-------CHhHHHHHHHHHHHhhcC----------
Q 035507 514 HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-------EFDIKEEAAWAISNASSR---------- 576 (684)
Q Consensus 514 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-------~~~v~~~a~~aL~nl~~~---------- 576 (684)
-.++.++.......|+|..++........+..|.++.|...+... +..-++.||..++|....
T Consensus 335 ~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIP 414 (619)
T 3c2g_A 335 IHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIP 414 (619)
T ss_dssp HCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred cCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEe
Confidence 444889999999999999999888888888999999999987532 445566777777775531
Q ss_pred ---------C--CHHHHHHHHHCCChHHHHhhccCC
Q 035507 577 ---------G--THDQIKYLVTEGCIKPLCDLLQCA 601 (684)
Q Consensus 577 ---------~--~~~~~~~l~~~g~l~~L~~lL~~~ 601 (684)
| +.++..++++.++++.|..+|+-+
T Consensus 415 m~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e 450 (619)
T 3c2g_A 415 TPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCE 450 (619)
T ss_dssp CTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred cCCCccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 234556677777888898888743
No 114
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.01 E-value=1.3 Score=41.98 Aligned_cols=192 Identities=14% Similarity=0.098 Sum_probs=122.9
Q ss_pred CcccHhHHHHHHHHHHcCChhhHHHHHh-cCChHHHHHHh-------ccCC-ChhHHHHHHHHHH--HHhcCChHHHHHH
Q 035507 474 SPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALL-------IHNH-KNSIKKEVSWIIS--NIACGNREQIQAV 542 (684)
Q Consensus 474 ~~~v~~~al~~L~nl~~~~~~~~~~~i~-~g~l~~L~~lL-------~~~~-~~~v~~~a~~~L~--nl~~~~~~~~~~l 542 (684)
+++.|+.|+.-|+.=-...++..-.+.. .|.+..|++=+ ..+. ....-...|.+|+ ...+..++.+..+
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 4456888887777654444443333443 35444443322 1110 1222333444443 3334567888999
Q ss_pred HHhCCHHHHHHHhccCC-----HhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHH
Q 035507 543 IDAGLIGPLVNLLQNAE-----FDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENIL 617 (684)
Q Consensus 543 ~~~g~l~~Li~ll~~~~-----~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il 617 (684)
+++++.-.|..++...+ ..+|-.+..+++.++...+++...++.+.++++.....++.++.--...|..++.+|+
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 99998777888776542 4688899999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCCcchhHHHHHHHHhchHH-HHHHhhcCCCHHHHHHHHHHHHHh
Q 035507 618 KVGEAEKNTDSDIGDINQFAQLVEEAEGLE-KIENLQSHDNNEIHEKSVKILETY 671 (684)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~L~~L~~~~~~~i~~~a~~ii~~~ 671 (684)
..+......+ ...+.|..... .+. -+..+...+++.+.+.......+.
T Consensus 174 ~dd~GL~YiC---~t~eRF~av~~---vL~~mV~~l~~~ps~RLLKhiircYlRL 222 (268)
T 2fv2_A 174 LDDTGLAYIC---QTYERFSHVAM---ILGKMVLQLSKEPSARLLKHVVRCYLRL 222 (268)
T ss_dssp HSHHHHHHHT---SSHHHHHHHHH---HHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHH---ccHHHHHHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 7654433211 11122222111 222 245566778888776555544444
No 115
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.93 E-value=0.62 Score=44.35 Aligned_cols=153 Identities=13% Similarity=0.136 Sum_probs=97.1
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhc
Q 035507 254 MVAGVWSDD-NNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMR----E------DYPQLQFQAAWALTNIAS 321 (684)
Q Consensus 254 lv~~L~s~~-~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~----~------~~~~v~~~A~~~L~~l~~ 321 (684)
+++.|+++. ...-..-+..|+..+...+ .-.+.+ ..+++..|+.+|.. . .+...+..++.||..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 444554432 2222334555655555554 445555 46677777777743 1 125788899999999997
Q ss_pred CCchhHHHHHh-cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-CC-chhHhh----------cCCHHHHHHHhccC
Q 035507 322 GTSENTKVVIE-HDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-GC-RDLVLS----------EGALIPLLAQLNEH 388 (684)
Q Consensus 322 ~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-~~-r~~i~~----------~g~l~~Ll~~L~~~ 388 (684)
+......++. .+++..+...|.++++.++..++..|+.+|..+. .. ...+++ ..-+.+++..+...
T Consensus 84 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 84 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp -SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred -ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 5556666664 4678999999999999999999999999986654 22 233321 12345566666545
Q ss_pred CchHHHHHHHHHHHHhccCC
Q 035507 389 TELSMLRIATTTLSNLCRGK 408 (684)
Q Consensus 389 ~~~~v~~~a~~~L~nL~~~~ 408 (684)
.+.+.+..+...+..+....
T Consensus 163 ~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPA 182 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHCCC
Confidence 55666666666666666654
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.92 E-value=0.34 Score=45.53 Aligned_cols=144 Identities=17% Similarity=0.085 Sum_probs=104.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hcCCCChHHHHHHHHHHHHhhC-CCCCCch
Q 035507 293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK-LLASPSDDVREQAVWALGNVAA-DSSGCRD 370 (684)
Q Consensus 293 i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~-lL~~~~~~v~~~a~~~L~nLa~-~~~~~r~ 370 (684)
++....+.+++. .++|..|+..|+.. ... ...++.+.. +-..++..|++.+..+++.++. ..++.
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 455566667777 69999999988877 311 124566666 5566889999999999999985 44431
Q ss_pred hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC
Q 035507 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN 450 (684)
Q Consensus 371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~ 450 (684)
.++.+..-. .+++..+++.|+..+.-.+.. + ........++|.+-.+..+++.-|+..+.|.|..++ ..+
T Consensus 140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S-K~~ 209 (240)
T 3l9t_A 140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS-KKF 209 (240)
T ss_dssp ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH-TTC
T ss_pred ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh-hhC
Confidence 344455444 888999999998877654443 2 222334567888888888999999999999999999 777
Q ss_pred hHHHHHHHH
Q 035507 451 NDKIQAVIE 459 (684)
Q Consensus 451 ~~~~~~~~~ 459 (684)
++....+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665554
No 117
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.41 E-value=0.26 Score=46.24 Aligned_cols=143 Identities=10% Similarity=-0.016 Sum_probs=102.0
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHH-HhcCCcHHHHHHHHHHHHhhccC-CChHHHH
Q 035507 378 LIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQ-LIHSNDEQVLTDACWALFGLSGD-RNNDKIQ 455 (684)
Q Consensus 378 l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~-lL~~~d~~v~~~al~~L~~L~~~-~~~~~~~ 455 (684)
+.++...|-++...+++..|+.+|..+ . .....++.+.. +..+++..|++.+..++..++ . ..++
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~-~~~~pe--- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFC-KKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHH-HHHCTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH-HhcCHH---
Confidence 345566665677678999999988877 2 12457787777 556778999999999999888 2 1111
Q ss_pred HHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh--hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507 456 AVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD--FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533 (684)
Q Consensus 456 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 533 (684)
..++.+.....+++..+|..|...+..-+.... .... -++|.+-.+..++ +.-||+..+|.|..++.
T Consensus 139 -----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 -----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDV-SEYVRKSVGNALRDISK 207 (240)
T ss_dssp -----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCS-CHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCCh-HHHHHHHHHHHHHHHhh
Confidence 256788899999999999998877643222211 1111 1456666666777 89999999999999999
Q ss_pred CChHHHHHHHH
Q 035507 534 GNREQIQAVID 544 (684)
Q Consensus 534 ~~~~~~~~l~~ 544 (684)
.+|+-+..+++
T Consensus 208 ~~Pd~V~~~~~ 218 (240)
T 3l9t_A 208 KFPDLVKIELK 218 (240)
T ss_dssp TCHHHHHHHHH
T ss_pred hCHHHHHHHHH
Confidence 98887766654
No 118
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.40 E-value=11 Score=45.22 Aligned_cols=298 Identities=9% Similarity=0.032 Sum_probs=168.4
Q ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcC----
Q 035507 250 ILPMMVAGVWSD--DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLM-REDYPQLQFQAAWALTNIASG---- 322 (684)
Q Consensus 250 ~l~~lv~~L~s~--~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~-~~~~~~v~~~A~~~L~~l~~~---- 322 (684)
.+..++..+.+. +.+.+.+|-..|..+-... +....+...|. .+.++.+|..|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~ 81 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG 81 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 344555555554 6777888888887753321 23344444443 333489999999999988642
Q ss_pred -CchhHHHHHhcCChHHHHHhcCC---CChHHHHHHHHHHHHhhCCC-C-CCchhHhhcCCHHHHHHHhccCCchHHHHH
Q 035507 323 -TSENTKVVIEHDAVPIFVKLLAS---PSDDVREQAVWALGNVAADS-S-GCRDLVLSEGALIPLLAQLNEHTELSMLRI 396 (684)
Q Consensus 323 -~~~~~~~i~~~g~i~~Li~lL~~---~~~~v~~~a~~~L~nLa~~~-~-~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~ 396 (684)
+++.+..+ ...++..+...-.. ....++.+++.++..|+... | .. .+.++.++..+.. +......
T Consensus 82 l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W------p~ll~~L~~~~~~--~~~~~e~ 152 (1204)
T 3a6p_A 82 MSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW------PDMLIELDTLSKQ--GETQTEL 152 (1204)
T ss_dssp SCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHHHHHT--CHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHhcC--CHHHHHH
Confidence 23333333 33344444443211 45789999999999998543 2 12 1346777777733 4455677
Q ss_pred HHHHHHHhccCC---CCCChhh-----------hhchHHHHHHHhcC-------------------CcHHHHHHHHHHHH
Q 035507 397 ATTTLSNLCRGK---PRPLFDQ-----------VRPALPALAQLIHS-------------------NDEQVLTDACWALF 443 (684)
Q Consensus 397 a~~~L~nL~~~~---~~~~~~~-----------~~~~l~~L~~lL~~-------------------~d~~v~~~al~~L~ 443 (684)
++.+|..++... ....... ...+++.+..++.. .+..+...++.++.
T Consensus 153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 778888776542 1111110 12344444444432 23456677777877
Q ss_pred hhccCCChHHHHHHHHh--chHHHHHHhcCCCCcccHhHHHHHHHHHHcCC--hhhHHHHHhc---CChHHHHHHhc---
Q 035507 444 GLSGDRNNDKIQAVIEA--GVCGRLVELLGHPSPSVLTPALWTVGNIVMGD--DFQTQCIINH---GAVPCLLALLI--- 513 (684)
Q Consensus 444 ~L~~~~~~~~~~~~~~~--g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~--~~~~~~~i~~---g~l~~L~~lL~--- 513 (684)
+.. .--+ ...+.+. .+++.+..++. ++.++..|+.+|..++... +.....++.. ..+..++..+.
T Consensus 233 ~~l-~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~ 307 (1204)
T 3a6p_A 233 GYI-DWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTAD 307 (1204)
T ss_dssp TTT-TTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCC
T ss_pred HHH-hccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 655 2211 2223333 27777777765 4678999999999999754 2221112210 11223444432
Q ss_pred ----cCCChhHHHHHHHHHHHHhcCChHHHHHHHH-----------hCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507 514 ----HNHKNSIKKEVSWIISNIACGNREQIQAVID-----------AGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 514 ----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~ 575 (684)
+..+.++.+..+..+..++. ....++. .++++.++.+..+++..+...++.....+..
T Consensus 308 ~~~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 308 GGGLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 11145677777777777752 1111211 1468888888888888888887766665554
No 119
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.19 E-value=0.4 Score=45.68 Aligned_cols=161 Identities=14% Similarity=0.138 Sum_probs=108.4
Q ss_pred HHHHHhcCChHHHHHHhcc----C------CChhHHHHHHHHHHHHhcCChHHHHHHHH-hCCHHHHHHHhccCCHhHHH
Q 035507 496 TQCIINHGAVPCLLALLIH----N------HKNSIKKEVSWIISNIACGNREQIQAVID-AGLIGPLVNLLQNAEFDIKE 564 (684)
Q Consensus 496 ~~~~i~~g~l~~L~~lL~~----~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~~ 564 (684)
.+.+ ..+++..|+.+|.. + .+...+.++..+|..+... ......++. .+.+..+...+.+.++.++.
T Consensus 37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~ 114 (233)
T 2f31_A 37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMI 114 (233)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHH
T ss_pred HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence 3344 34566666666632 1 1345677788888887653 455565654 45788888888888999999
Q ss_pred HHHHHHHHhhcCCC----HH-HHHH------HHHCCChHHHHhhcc-CCChHHHHHHHHHHHHHHhcccccccCCCCCcc
Q 035507 565 EAAWAISNASSRGT----HD-QIKY------LVTEGCIKPLCDLLQ-CADPKIVTVCLEGLENILKVGEAEKNTDSDIGD 632 (684)
Q Consensus 565 ~a~~aL~nl~~~~~----~~-~~~~------l~~~g~l~~L~~lL~-~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~ 632 (684)
.|+..|..++.... .+ .... .-+..-...+++.++ ..+.+....++..+..++...+... .
T Consensus 115 ~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~-------~ 187 (233)
T 2f31_A 115 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------F 187 (233)
T ss_dssp HHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-------H
T ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH-------H
Confidence 99988877765432 11 1111 123345777888777 4667888888888888887755432 2
Q ss_pred hhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 035507 633 INQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665 (684)
Q Consensus 633 ~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~ 665 (684)
-......+..+|..+.++.+....++++...-.
T Consensus 188 R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 188 RVHIRSELMRLGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence 234677888999999999999989988765543
No 120
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.97 E-value=1.5 Score=45.15 Aligned_cols=156 Identities=13% Similarity=0.130 Sum_probs=106.3
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHH
Q 035507 252 PMMVAGVWSDD-NNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMR----------EDYPQLQFQAAWALTNI 319 (684)
Q Consensus 252 ~~lv~~L~s~~-~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~----------~~~~~v~~~A~~~L~~l 319 (684)
..++..|.++- .......+..|+..+...+ .-++.++ .+++..|+..|.. ..+...+..++.||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 45666666543 2333456777777776665 4556666 6677888888742 11257889999999999
Q ss_pred hcCCchhHHHHHh-cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-CC-chhHh----------hcCCHHHHHHHhc
Q 035507 320 ASGTSENTKVVIE-HDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-GC-RDLVL----------SEGALIPLLAQLN 386 (684)
Q Consensus 320 ~~~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-~~-r~~i~----------~~g~l~~Ll~~L~ 386 (684)
.. +......++. ...+..+...|.++++.++..|+..|+.+|..+. .. ...++ +..-+.+++..+.
T Consensus 148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 87 5556666664 4679999999999999999999999999997653 21 22222 2234667777775
Q ss_pred cCCchHHHHHHHHHHHHhccCCC
Q 035507 387 EHTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 387 ~~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
...+.+...++...+..+....+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ccCcHHHHHHHHHHHHHHHcCCC
Confidence 55666777777777777776643
No 121
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.88 E-value=2.6 Score=43.84 Aligned_cols=210 Identities=14% Similarity=0.111 Sum_probs=128.5
Q ss_pred CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHH
Q 035507 388 HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLV 467 (684)
Q Consensus 388 ~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~ 467 (684)
..+...++-|+..+..+...-| .....++..++.++.++|..|+..|+..|..+| .. +... .+...|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~c-k~--~~i~-----kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFA-TG--ENLP-----RVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGC-CT--TCHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHh-hh--hhhh-----hHHHHHH
Confidence 3457888889999988877754 234678889999999999999999999999999 44 3333 4567899
Q ss_pred HhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhC
Q 035507 468 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAG 546 (684)
Q Consensus 468 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g 546 (684)
++|+.+++.-....-.+|..+...++.. .+..+...+..+ ++.+|..+...|..-... .++....-++.-
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~ 177 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKEVEEL 177 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHHHHHH
Confidence 9999888766666666777776655532 334444444456 778888887777644321 111111122222
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHh---hccCCChHHHHHHHHHHHHHHhcc
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCD---LLQCADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~---lL~~~~~~v~~~al~~L~~il~~~ 620 (684)
++..+.++|++...+=-......|..+-...+....+.|++ ++....+ -++..|++.+...+.++..-+-.-
T Consensus 178 i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~--ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~F 252 (507)
T 3u0r_A 178 ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVE--LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF 252 (507)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHH--HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHH--HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 44455556655443333334445544444445544444332 1111111 133467777777777777665543
No 122
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.81 E-value=1.2 Score=46.27 Aligned_cols=248 Identities=14% Similarity=0.082 Sum_probs=139.4
Q ss_pred CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHH
Q 035507 346 PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQ 425 (684)
Q Consensus 346 ~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~ 425 (684)
++...+.-|+..+.....+-|..++. ++..++.++ .+.|..++..|+..|..+|.+ ..+..+..+|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 56788888888888888888775544 577888888 778889999999999999987 336788899999
Q ss_pred HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC-ChhhHHHHHhcCC
Q 035507 426 LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG-DDFQTQCIINHGA 504 (684)
Q Consensus 426 lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~-~~~~~~~~i~~g~ 504 (684)
+|+.+++.-...+-.+|..+. ..++. +.+..+..-+..+++.+|+.++..|..-... ..+....-++.-+
T Consensus 108 lLqtdd~~E~~~V~~sL~sll-k~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIF-KMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHH-HHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHH-hcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 999999888877777777776 32221 3344444444445778888888877554321 1111111112224
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHh------ccCCHhHHHHHHHHHHHhh---
Q 035507 505 VPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLL------QNAEFDIKEEAAWAISNAS--- 574 (684)
Q Consensus 505 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll------~~~~~~v~~~a~~aL~nl~--- 574 (684)
+..+.++|.+- ...-=.-....|..+-. .++...+.+ ++.+.+.. ...|.+.....+.++....
T Consensus 179 ~~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~F 252 (507)
T 3u0r_A 179 LTESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF 252 (507)
T ss_dssp HHHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 45666666443 22111122223333222 333333333 23333332 1135555444444444333
Q ss_pred -cC-CCHHHHHHHHHCCChHHHHhhccC-CChHHHHHHHHHHHHHHhccc
Q 035507 575 -SR-GTHDQIKYLVTEGCIKPLCDLLQC-ADPKIVTVCLEGLENILKVGE 621 (684)
Q Consensus 575 -~~-~~~~~~~~l~~~g~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~ 621 (684)
.+ .+.....++.+. +++.+-.+-.. ..++.+...+.++..+.....
T Consensus 253 S~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 253 SKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp BTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred ccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 22 244566665554 56544443322 112244455555555554443
No 123
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.70 E-value=2.8 Score=50.34 Aligned_cols=284 Identities=10% Similarity=0.045 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc--CCCChHHHHHHHHHHHHhhCCC-----CCCchhHhhcCC
Q 035507 305 YPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL--ASPSDDVREQAVWALGNVAADS-----SGCRDLVLSEGA 377 (684)
Q Consensus 305 ~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL--~~~~~~v~~~a~~~L~nLa~~~-----~~~r~~i~~~g~ 377 (684)
++..|.+|-..|..+-. ++ ++...+...| .+.+..+|..|+..|-|..... ++.+..+
T Consensus 26 ~~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I----- 90 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL----- 90 (1204)
T ss_dssp CHHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-----
T ss_pred ChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-----
Confidence 36788888888887755 22 2344444433 3467889999999999887432 1111111
Q ss_pred HHHHHHHhccC------CchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC-
Q 035507 378 LIPLLAQLNEH------TELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR- 449 (684)
Q Consensus 378 l~~Ll~~L~~~------~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~- 449 (684)
=..++..+.+. ....++..++.++..++... | .....+++.++.++.+ ++.....++.+|..++ ..
T Consensus 91 r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~-Eev 164 (1204)
T 3a6p_A 91 KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLA-EDV 164 (1204)
T ss_dssp HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHH-HHH
Confidence 22344444322 35677888888888888765 3 2346788888888876 4556777888887776 21
Q ss_pred ------ChHHHHH---HHHh---chHHHHHHhcCC-------------------CCcccHhHHHHHHHHHHcCChhhHHH
Q 035507 450 ------NNDKIQA---VIEA---GVCGRLVELLGH-------------------PSPSVLTPALWTVGNIVMGDDFQTQC 498 (684)
Q Consensus 450 ------~~~~~~~---~~~~---g~l~~L~~lL~~-------------------~~~~v~~~al~~L~nl~~~~~~~~~~ 498 (684)
....... .+.. .+++.+..++.. .+..++..++.++.+...--+ ...
T Consensus 165 ~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~ 242 (1204)
T 3a6p_A 165 VTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSH 242 (1204)
T ss_dssp HTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHH
Confidence 1111111 1111 233333444422 122355666777765544322 122
Q ss_pred HHhcC--ChHHHHHHhccCCChhHHHHHHHHHHHHhcCC--hHHHHHHHHh---CCHHHHHHHhc--------cCCHhHH
Q 035507 499 IINHG--AVPCLLALLIHNHKNSIKKEVSWIISNIACGN--REQIQAVIDA---GLIGPLVNLLQ--------NAEFDIK 563 (684)
Q Consensus 499 ~i~~g--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---g~l~~Li~ll~--------~~~~~v~ 563 (684)
+.+.. +++.+..++. ++.++..|+.+|..++... ++....++.. ..+..++.... +.+.++.
T Consensus 243 i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~ 319 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFL 319 (1204)
T ss_dssp HHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHH
T ss_pred HHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHH
Confidence 33332 6666666554 4578999999999998733 3332222221 11334444432 1245666
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHH-----------CCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 564 EEAAWAISNASSRGTHDQIKYLVT-----------EGCIKPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 564 ~~a~~aL~nl~~~~~~~~~~~l~~-----------~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
+..+..+..+.. . ...++. .++++.+..+..+++..+...++.....+++.
T Consensus 320 k~l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 320 KRLCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 666666666652 1 122221 12466666666666666666666555545443
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.46 E-value=1.3 Score=52.39 Aligned_cols=207 Identities=16% Similarity=0.144 Sum_probs=123.4
Q ss_pred ChHHHHHhcCCCChHHHHHHHHHHHHhhC-CCCCCchhHhhcCCHHHHHHHhcc---CCchHHHHHHHHHHHHh----cc
Q 035507 335 AVPIFVKLLASPSDDVREQAVWALGNVAA-DSSGCRDLVLSEGALIPLLAQLNE---HTELSMLRIATTTLSNL----CR 406 (684)
Q Consensus 335 ~i~~Li~lL~~~~~~v~~~a~~~L~nLa~-~~~~~r~~i~~~g~l~~Ll~~L~~---~~~~~v~~~a~~~L~nL----~~ 406 (684)
++..+.+++.+......+ |+++|..... -.|. .+ .+..+..++.. ..++.++..+.-+++.| |.
T Consensus 357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt-~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~ 428 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAE-ATQIVASTLSNQQAT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA 428 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCC-HH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhc
Confidence 355556666665443333 4444433221 1121 12 24445555532 23455666566555555 44
Q ss_pred CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-----C--CcccHh
Q 035507 407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-----P--SPSVLT 479 (684)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-----~--~~~v~~ 479 (684)
..+......+..+...+.+.+...+.+-+.-++.+|+|+. . + ..++.|.+++.. . ...++.
T Consensus 429 ~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g-~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~ 496 (1056)
T 1lsh_A 429 NTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG-Q--P---------NSIKKIQRFLPGQGKSLDEYSTRVQA 496 (1056)
T ss_dssp TCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-C--G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC-C--h---------hHHHHHHHhhcCccccccccchHHHH
Confidence 4322233335566666667777888888999999999998 2 1 356777777742 1 235778
Q ss_pred HHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc-
Q 035507 480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH-NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN- 557 (684)
Q Consensus 480 ~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~- 557 (684)
.|+++|..++...+...+ +.++++..+ ..++++|..|+..|..-. -+.. .+..+...+..
T Consensus 497 aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~t~-P~~~---------~l~~ia~~l~~E 558 (1056)
T 1lsh_A 497 EAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFESK-PSVA---------LVSMVAVRLRRE 558 (1056)
T ss_dssp HHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHTC-CCHH---------HHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHHHC-cCHH---------HHHHHHHHHhhC
Confidence 899999999876654433 456666632 238899999988875431 1212 24445555554
Q ss_pred CCHhHHHHHHHHHHHhhcCCCH
Q 035507 558 AEFDIKEEAAWAISNASSRGTH 579 (684)
Q Consensus 558 ~~~~v~~~a~~aL~nl~~~~~~ 579 (684)
.+..|.......|.+++....+
T Consensus 559 ~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 559 PNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp SCHHHHHHHHHHHHHHTTCCSG
T ss_pred chHHHHHHHHHHHHHHHhcCCc
Confidence 4788888888888888886655
No 125
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.30 E-value=3.5 Score=48.65 Aligned_cols=243 Identities=13% Similarity=0.133 Sum_probs=141.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHcC---CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 035507 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIE---SMPIEEVIESG---VVPRFVEFLMREDYPQLQFQAAWALTNIASGT 323 (684)
Q Consensus 250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~---~~~~~~ii~~g---~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~ 323 (684)
.+-.+++.|..-+.+........+.. .. ..-.+.+...| .+..+.+++.+..- .. .+|+++|..... .
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~---~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l-~~-~ea~~~l~~~~~-~ 385 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLHQ---QKDYRRWILDAVPAMATSEALLFLKRTLASEQL-TS-AEATQIVASTLS-N 385 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTT---SHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHH-T
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc---cHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCC-CH-HHHHHHHHHhhc-c
Confidence 45566777776554433332222211 00 01223344444 45555666666542 22 225555543332 1
Q ss_pred chhHHHHHhcCChHHHHHhcCC----CChHHHHHHHHHHHHhhC----CCCCCchhHhhcCCHHHHHHHhc---cCCchH
Q 035507 324 SENTKVVIEHDAVPIFVKLLAS----PSDDVREQAVWALGNVAA----DSSGCRDLVLSEGALIPLLAQLN---EHTELS 392 (684)
Q Consensus 324 ~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~a~~~L~nLa~----~~~~~r~~i~~~g~l~~Ll~~L~---~~~~~~ 392 (684)
..... ..+..+..++.+ .++.+++.|+.++++++. +.+.|... .++++...+. ...+.+
T Consensus 386 ~~Pt~-----e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~-----~v~~i~~~l~~~~~~~~~~ 455 (1056)
T 1lsh_A 386 QQATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDE-----LLQPLHDLLSQSSDRAKEE 455 (1056)
T ss_dssp CCCCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGG-----GTHHHHHHHHHHHHTTCHH
T ss_pred CCCCH-----HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHH-----HHHHHHHHHHHHHhcCChH
Confidence 11111 235556666665 467888999999988863 33333222 2444444432 344666
Q ss_pred HHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC-------CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHH
Q 035507 393 MLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS-------NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGR 465 (684)
Q Consensus 393 v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~ 465 (684)
-...++.+|+|+-.. ..++.+.+++.. ....++..|+++|..+. ...+... -+.
T Consensus 456 ~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~-~~~p~~v--------~~i 516 (1056)
T 1lsh_A 456 EIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA-KRDPRKV--------QEI 516 (1056)
T ss_dssp HHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG-GTCHHHH--------HHH
T ss_pred HHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh-hhchHHH--------HHH
Confidence 778899999998653 456777777642 23578899999999998 5444333 355
Q ss_pred HHHhc--CCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChH
Q 035507 466 LVELL--GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE 537 (684)
Q Consensus 466 L~~lL--~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 537 (684)
+.++. ...++.+|..|+..|. -+..+ . ..+..+...+....+..|.......|.+++..+..
T Consensus 517 l~~i~~n~~e~~EvRiaA~~~Lm--~t~P~-~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 517 VLPIFLNVAIKSELRIRSCIVFF--ESKPS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHH--HTCCC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHhcCCCCChHHHHHHHHHHH--HHCcC-H-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 67776 4467788888888773 22232 1 13556677776655888999999999999885433
No 126
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.14 E-value=1.3 Score=43.89 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=99.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCC----hHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCC
Q 035507 294 PRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDA----VPIFVKLLAS-PSDDVREQAVWALGNVAADSSGC 368 (684)
Q Consensus 294 ~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~----i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~ 368 (684)
..+.++++-+. +.+.-++..+.-.+. ++.....+.+.+. +..++..+.+ ..+..+-.++++++|+......
T Consensus 106 ~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g- 181 (304)
T 3ebb_A 106 QILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG- 181 (304)
T ss_dssp HHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH-
T ss_pred HHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh-
Confidence 44444443332 345555555555554 4444444433222 2233344433 3466688899999999877653
Q ss_pred chhHhhcCCHHHHHHHhc---cCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHH
Q 035507 369 RDLVLSEGALIPLLAQLN---EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALF 443 (684)
Q Consensus 369 r~~i~~~g~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~ 443 (684)
|+.+... ...++..+. .+.+..++..++.++.|++-.. ..........++..+..++. ..|.+....++.+++
T Consensus 182 ~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALG 259 (304)
T 3ebb_A 182 QKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALG 259 (304)
T ss_dssp HHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 5555431 233333332 4457788888888888887653 12223334445566666664 468999999999999
Q ss_pred hhccCCChHHHHHHHHhchHHHHHHhcCC
Q 035507 444 GLSGDRNNDKIQAVIEAGVCGRLVELLGH 472 (684)
Q Consensus 444 ~L~~~~~~~~~~~~~~~g~l~~L~~lL~~ 472 (684)
++. ..+.+..+.....|+-..+-.....
T Consensus 260 tL~-~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 260 TLI-SDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHH-TTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHH-hCChhHHHHHHHcCHHHHHHHHHhC
Confidence 999 6655544444444655555555544
No 127
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.02 E-value=2.4 Score=43.59 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=110.4
Q ss_pred hHHHHHhcCChHHHHHHhcc----------CCChhHHHHHHHHHHHHhcCChHHHHHHHH-hCCHHHHHHHhccCCHhHH
Q 035507 495 QTQCIINHGAVPCLLALLIH----------NHKNSIKKEVSWIISNIACGNREQIQAVID-AGLIGPLVNLLQNAEFDIK 563 (684)
Q Consensus 495 ~~~~~i~~g~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~ 563 (684)
-.+.++ .+++..|+.+|.. ..+...+..+..+|..+... ...+..++. ...+..|...+.+..+.++
T Consensus 102 WV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~ 179 (383)
T 3eg5_B 102 WVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMM 179 (383)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence 344444 4566777777631 11346777888888888654 355555554 4578899999999999999
Q ss_pred HHHHHHHHHhhcCCC----HH-HH------HHHHHCCChHHHHhhccC-CChHHHHHHHHHHHHHHhcccccccCCCCCc
Q 035507 564 EEAAWAISNASSRGT----HD-QI------KYLVTEGCIKPLCDLLQC-ADPKIVTVCLEGLENILKVGEAEKNTDSDIG 631 (684)
Q Consensus 564 ~~a~~aL~nl~~~~~----~~-~~------~~l~~~g~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~~~~~~~~~~~ 631 (684)
..|+..|..++.... .+ .. +...+..-...+++.+.. .+.+....++..+..++...+...
T Consensus 180 ~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~------- 252 (383)
T 3eg5_B 180 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------- 252 (383)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-------
T ss_pred HHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH-------
Confidence 999999988776432 11 11 112234557888888886 678888888888888887664432
Q ss_pred chhHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 035507 632 DINQFAQLVEEAEGLEKIENLQSHDNNEIHEK 663 (684)
Q Consensus 632 ~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~ 663 (684)
.-......+..+|..+.++.|....++++...
T Consensus 253 ~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 253 FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred HHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 22346778889999999999988888877543
No 128
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.89 E-value=6.8 Score=37.50 Aligned_cols=99 Identities=10% Similarity=0.084 Sum_probs=70.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507 253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE 332 (684)
Q Consensus 253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~ 332 (684)
.+++..+....+.+...+...+.++....+.. -..+++.++.+..+++ .++|...+..+...+...++...
T Consensus 19 ~lln~A~~~~~~~kl~~L~qa~el~~~~dp~l----l~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~---- 89 (257)
T 3gs3_A 19 DWCNELVIASPSTKCELLAKVQETVLGSCAEL----AEEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP---- 89 (257)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGG----HHHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH----
T ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHccCHhH----HHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34443343233788899999999776644321 1346677888766655 89999999999998864444333
Q ss_pred cCChHHHHHhcCCCChHHHHHHHHHHHHh
Q 035507 333 HDAVPIFVKLLASPSDDVREQAVWALGNV 361 (684)
Q Consensus 333 ~g~i~~Li~lL~~~~~~v~~~a~~~L~nL 361 (684)
..++.|..++.++++.+...++.+.+++
T Consensus 90 -~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 90 -HVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp -HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3467888889889999999999988887
No 129
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.78 E-value=3.2 Score=42.64 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=100.8
Q ss_pred HHHHHhcCCCHHH-HHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHh
Q 035507 253 MMVAGVWSDDNNL-QLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMR----E------DYPQLQFQAAWALTNIA 320 (684)
Q Consensus 253 ~lv~~L~s~~~~~-~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~----~------~~~~v~~~A~~~L~~l~ 320 (684)
.+++.|.++...- ....+..|+..+...+ .-++.+. .+++..|+.+|.. . .+...+..++.||..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 4555555543221 2234566666565554 4455554 5667777777742 1 12578899999999999
Q ss_pred cCCchhHHHHHh-cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-CC-chhHh----------hcCCHHHHHHHhcc
Q 035507 321 SGTSENTKVVIE-HDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-GC-RDLVL----------SEGALIPLLAQLNE 387 (684)
Q Consensus 321 ~~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-~~-r~~i~----------~~g~l~~Ll~~L~~ 387 (684)
. +......++. .+++..+...|.++++.++..++..|+.+|..+. .. ...++ +..-+.+++..+..
T Consensus 87 N-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 87 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred C-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 8 5555555554 4679999999999999999999999999996654 22 22222 22345567777765
Q ss_pred CCchHHHHHHHHHHHHhccCCC
Q 035507 388 HTELSMLRIATTTLSNLCRGKP 409 (684)
Q Consensus 388 ~~~~~v~~~a~~~L~nL~~~~~ 409 (684)
+.+.+....+...+..+....+
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~ 187 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAE 187 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCS
T ss_pred CChHHHHHHHHHHHHHHHCCCC
Confidence 6667777777777777777654
No 130
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=91.74 E-value=0.8 Score=45.38 Aligned_cols=154 Identities=10% Similarity=0.070 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcC----CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 035507 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESG----VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSEN 326 (684)
Q Consensus 251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g----~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 326 (684)
+..+.+.+ +=..+.++-++..+|-++... .....+.+.+ ++..+...+.+...+..+..+++++.|+.. ++..
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p-~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g 181 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKHP-SVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQAG 181 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTSH-HHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcCc-cHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-Cchh
Confidence 34455544 333456677777777655421 1112222211 233344555444447789999999999998 6667
Q ss_pred HHHHHhc--CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507 327 TKVVIEH--DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404 (684)
Q Consensus 327 ~~~i~~~--g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL 404 (684)
+..+... .+++.+...+.+++..++..++..+.|++......++.-.....+..+...+....|.+...-++-+|++|
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 7766643 34555555666678999999999999998421111110001112334444554556888888888889988
Q ss_pred ccC
Q 035507 405 CRG 407 (684)
Q Consensus 405 ~~~ 407 (684)
...
T Consensus 262 ~~~ 264 (304)
T 3ebb_A 262 ISD 264 (304)
T ss_dssp HTT
T ss_pred HhC
Confidence 865
No 131
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.97 E-value=9 Score=39.26 Aligned_cols=139 Identities=13% Similarity=0.126 Sum_probs=97.8
Q ss_pred ChhHHHHHHHHHHHHhcCChHHHHHHHH-hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC----HH-HHHH------
Q 035507 517 KNSIKKEVSWIISNIACGNREQIQAVID-AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT----HD-QIKY------ 584 (684)
Q Consensus 517 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~----~~-~~~~------ 584 (684)
+.....++..+|..+... ...+..++. .+.+..+...+.+.++.++..++..|..++.... .+ ....
T Consensus 71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 345677888888888654 345555554 4578888888888899999999888877766432 11 1111
Q ss_pred HHHCCChHHHHhhcc-CCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 035507 585 LVTEGCIKPLCDLLQ-CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEK 663 (684)
Q Consensus 585 l~~~g~l~~L~~lL~-~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~ 663 (684)
..+..-...+++.+. +.+.+....++..+..++...+... .-..+...|..+|..+.++.|....++++...
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~-------~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 123345667787776 5677888888888888887765432 23346788899999999999999898887644
No 132
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.10 E-value=18 Score=36.78 Aligned_cols=88 Identities=10% Similarity=0.120 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc
Q 035507 264 NLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL 343 (684)
Q Consensus 264 ~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL 343 (684)
+.+...+..++.++-...+. .-..+++.++++-.+++ .++|...+..|...+....+... .+++.|..+|
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL 109 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLL 109 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 46888888888875543322 22568899999988777 89999999999988874444432 3467888888
Q ss_pred CCCChHHHHHHHHHHHHh
Q 035507 344 ASPSDDVREQAVWALGNV 361 (684)
Q Consensus 344 ~~~~~~v~~~a~~~L~nL 361 (684)
.++++.+...++.+.+++
T Consensus 110 ~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQL 127 (386)
T ss_dssp TCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 888999999999988887
No 133
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=83.95 E-value=3.9 Score=34.97 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=55.4
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhc-hHHHHHHhhcCC--------CHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAE-GLEKIENLQSHD--------NNEI 660 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~~L~~L~~~~--------~~~i 660 (684)
+++.|..-|+..++.++..+|.+|..++..+... |...+.+.- .+..+...+..+ +..|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V 117 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV 117 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence 5667888888899999999999999999876443 555555433 233333332222 2679
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q 035507 661 HEKSVKILETYWCGRVVGP 679 (684)
Q Consensus 661 ~~~a~~ii~~~f~~e~~~~ 679 (684)
+.+|.++++-.|+++...+
T Consensus 118 R~~AkEl~~ll~d~~~~~~ 136 (140)
T 1vdy_A 118 RETAHETISAIFSEENGSG 136 (140)
T ss_dssp HHHHHHHHHHHTCCSSCCC
T ss_pred HHHHHHHHHHHhCcCCCCC
Confidence 9999999999999887643
No 134
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=82.37 E-value=26 Score=34.09 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=94.6
Q ss_pred hHHHHHHHhcCC------cHHHHHHHHHHHHhhccCCChHHHHHHHH--hchHHHHHHhcCCCCcccHhHHHHHHHHHHc
Q 035507 419 ALPALAQLIHSN------DEQVLTDACWALFGLSGDRNNDKIQAVIE--AGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490 (684)
Q Consensus 419 ~l~~L~~lL~~~------d~~v~~~al~~L~~L~~~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 490 (684)
-+..+..++.++ |.+....++..|..++ . +-..--.+++ ...+..|+ +.....+.+++.|.++|+...+
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElS-H-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR 99 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFA-H-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGT-T-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhh-h-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence 334445555554 5667889999999998 3 3333333443 34455555 3344566789999999999999
Q ss_pred CChhhHHHHHhc--CChHHHHHHhcc----C--CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CH
Q 035507 491 GDDFQTQCIINH--GAVPCLLALLIH----N--HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560 (684)
Q Consensus 491 ~~~~~~~~~i~~--g~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~ 560 (684)
.+|.....+.+. .++..+..-|.. . ....+++.-..+|.-++..+... ....+..|.+++... +.
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~ 174 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDK 174 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCH
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCH
Confidence 999888877652 333333333322 1 13456666677777776654221 134567777777666 89
Q ss_pred hHHHHHHHHHHHhhc
Q 035507 561 DIKEEAAWAISNASS 575 (684)
Q Consensus 561 ~v~~~a~~aL~nl~~ 575 (684)
.++..++..+..+..
T Consensus 175 ~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 175 QLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999988887763
No 135
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=81.89 E-value=6.4 Score=38.33 Aligned_cols=135 Identities=12% Similarity=0.089 Sum_probs=89.3
Q ss_pred ccHhHHHHHHHHHHcCChhhHHHHH-hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHh--CCHHHHH
Q 035507 476 SVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDA--GLIGPLV 552 (684)
Q Consensus 476 ~v~~~al~~L~nl~~~~~~~~~~~i-~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~--g~l~~Li 552 (684)
.....|+..|..+++.-....+.+- +...+..|+ +.... ++.++..|+.+++.....+|..+..+.+. .++..++
T Consensus 43 ~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 3456778888888776655554433 323333333 22334 67899999999999999999999888753 3444444
Q ss_pred HHhcc-------CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--ChHHHHHHHHHHHHHHh
Q 035507 553 NLLQN-------AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA--DPKIVTVCLEGLENILK 618 (684)
Q Consensus 553 ~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~--~~~v~~~al~~L~~il~ 618 (684)
.-|.. ....+++.-+.+|.-++... .++ ....+..|.+++... ++.++..++.++..++.
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 44432 24466677778888777642 111 134567777777666 89999999999999986
No 136
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=79.96 E-value=1.5 Score=44.07 Aligned_cols=17 Identities=29% Similarity=0.684 Sum_probs=6.9
Q ss_pred cCCccceeeccCccccc
Q 035507 160 FPSLEVLVVDDCHNMMI 176 (684)
Q Consensus 160 fp~L~~~~v~~Cp~l~~ 176 (684)
+|+|++|.+.+|+.+..
T Consensus 252 l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLT 268 (328)
T ss_dssp CCCCCEEECTTCTTCCB
T ss_pred CCCCCEEECCCCCchhh
Confidence 33444444444444333
No 137
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=76.89 E-value=2.2 Score=42.86 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=41.4
Q ss_pred hccccccCCccccccccCccccccCCccceeeccCcccccccccccCcccchhhhhc
Q 035507 137 EKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLK 193 (684)
Q Consensus 137 l~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~~ 193 (684)
|++|.|.+.+.+..+-.. ...+|+|+.|.+.+|+.+..++.+...-|+++...+.
T Consensus 255 L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCEEECCCCCchhhcchh--hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 566777666655555433 3578999999999999999888888777777666655
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=75.15 E-value=6.8 Score=34.64 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=53.0
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH-DNNEIHEKSVKIL 668 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~-~~~~i~~~a~~ii 668 (684)
++..|..-+.+.++.++..++..|..+++.+... |...+-....++.+..+... .+++|++++..+|
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 3556777788899999999999999999876543 45555555566666666443 6789999999999
Q ss_pred HHh
Q 035507 669 ETY 671 (684)
Q Consensus 669 ~~~ 671 (684)
+.+
T Consensus 121 ~~W 123 (163)
T 1x5b_A 121 VEW 123 (163)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 139
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=74.98 E-value=43 Score=34.17 Aligned_cols=230 Identities=14% Similarity=0.077 Sum_probs=106.9
Q ss_pred HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
...++...+..|+.++.++|+.-|+..-.+|.++-+.-...|..+.. .+-..+...+.......-....+.+++.+..+
T Consensus 123 k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinG 201 (403)
T 3fga_B 123 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING 201 (403)
T ss_dssp TTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHcc
Confidence 34445556888999999999999999999999886554443333321 11122333332222222223344555555555
Q ss_pred CCCCC-hhhhhchHHHHHHHhcCCcHH-HHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhH--HH
Q 035507 408 KPRPL-FDQVRPALPALAQLIHSNDEQ-VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTP--AL 482 (684)
Q Consensus 408 ~~~~~-~~~~~~~l~~L~~lL~~~d~~-v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~--al 482 (684)
-..+- .....-...+|+.+-....-. .-.....++.... ..++.... +.+-.+|++ +.....+. -+
T Consensus 202 fa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~-eKDp~L~~--------~vi~~LLk~WP~tns~KevlFL 272 (403)
T 3fga_B 202 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFL-EKDSTLTE--------PVVMALLKYWPKTHSPKEVMFL 272 (403)
T ss_dssp CCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHH-HHCGGGHH--------HHHHHHHHTCCSSCHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH-HhCchhHH--------HHHHHHHHhCCCCCcHHHHHHH
Confidence 42221 222222233344443332211 1112222222222 22222222 112222222 22222222 23
Q ss_pred HHHHHHHcCC-hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH---hCCHHHHHHHh---
Q 035507 483 WTVGNIVMGD-DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID---AGLIGPLVNLL--- 555 (684)
Q Consensus 483 ~~L~nl~~~~-~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~g~l~~Li~ll--- 555 (684)
.-+..+.... +...+.+. ..++..+...+.++ +..|...|.....| +.+..++. ..++|.+...+
T Consensus 273 ~Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~~ 344 (403)
T 3fga_B 273 NELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRN 344 (403)
T ss_dssp HHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444333 22333222 23566777777887 77777776654321 22222221 12445544444
Q ss_pred -ccC-CHhHHHHHHHHHHHhhc
Q 035507 556 -QNA-EFDIKEEAAWAISNASS 575 (684)
Q Consensus 556 -~~~-~~~v~~~a~~aL~nl~~ 575 (684)
... +..++..|..++.-+..
T Consensus 345 ~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 345 SKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHccCHHHHHHHHHHHHHHHH
Confidence 333 78888888888877765
No 140
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=74.97 E-value=74 Score=32.98 Aligned_cols=233 Identities=14% Similarity=0.071 Sum_probs=117.1
Q ss_pred hhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404 (684)
Q Consensus 325 ~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL 404 (684)
......++...+..|+.++.++|+.-|+....+|..+-+.-...|..+... +-..+...+.......-....+..++.+
T Consensus 153 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSI 231 (449)
T 2npp_B 153 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSI 231 (449)
T ss_dssp TTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHH
T ss_pred hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence 334455566778999999999999999999999999887766666555432 2223344443333333334566677777
Q ss_pred ccCCCCC-ChhhhhchHHHHHHHhcCCcHHH-HHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhH-
Q 035507 405 CRGKPRP-LFDQVRPALPALAQLIHSNDEQV-LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTP- 480 (684)
Q Consensus 405 ~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v-~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~- 480 (684)
..+-..+ ......-...+|+.+.....-.. -.....++.... ..++.... +.+-.+|++ +.......
T Consensus 232 inGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~-eKDp~L~~--------~vi~~LLk~WP~tns~Kev 302 (449)
T 2npp_B 232 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFL-EKDSTLTE--------PVVMALLKYWPKTHSPKEV 302 (449)
T ss_dssp HSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHH-HHCGGGHH--------HHHHHHHHTCCSSCHHHHH
T ss_pred HhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHH-hcCcHhHH--------HHHHHHHHhCCCCCchHHH
Confidence 7665222 22222223334444444332111 112222332222 22222222 112222222 22222322
Q ss_pred -HHHHHHHHHcCC-hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH---hCCHHHHHHHh
Q 035507 481 -ALWTVGNIVMGD-DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID---AGLIGPLVNLL 555 (684)
Q Consensus 481 -al~~L~nl~~~~-~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~g~l~~Li~ll 555 (684)
-+.-+..+.... +...+.+. ..+...+...+.++ +..|...|.....| +.+..++. ..++|.++..+
T Consensus 303 lFL~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N------~~i~~li~~n~~~IlPii~p~L 374 (449)
T 2npp_B 303 MFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSL 374 (449)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCC------HHHHHHHHhchhhhHHhhHHHH
Confidence 333444444332 22333222 23566777778887 77777777644322 11222221 12566666655
Q ss_pred cc----C-CHhHHHHHHHHHHHhhc
Q 035507 556 QN----A-EFDIKEEAAWAISNASS 575 (684)
Q Consensus 556 ~~----~-~~~v~~~a~~aL~nl~~ 575 (684)
.. . +..++..|..++.-+..
T Consensus 375 ~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 375 YRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp TSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 32 1 56677777777765554
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=73.71 E-value=5.9 Score=34.03 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=52.3
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILE 669 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~ 669 (684)
++..|..-+.+.++.++..++..|..+++.+... |...+....+++.+..+....+++|++++..++.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3566667778889999999999999998876543 4444444455666666655578999999999998
Q ss_pred Hh
Q 035507 670 TY 671 (684)
Q Consensus 670 ~~ 671 (684)
.+
T Consensus 111 ~W 112 (140)
T 3ldz_A 111 EW 112 (140)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=70.69 E-value=11 Score=32.63 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=54.6
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC------CCHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH------DNNEIHEK 663 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~------~~~~i~~~ 663 (684)
++..|..-+.+.++.++..++..|..+++.+... |...+-...+++.|..+... .+++|+++
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 106 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK------------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR 106 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence 4566677778999999999999999999876543 55666666777777777542 47899999
Q ss_pred HHHHHHHh
Q 035507 664 SVKILETY 671 (684)
Q Consensus 664 a~~ii~~~ 671 (684)
+..+|+.+
T Consensus 107 il~li~~W 114 (148)
T 1mhq_A 107 VIEILFSW 114 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 143
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=69.72 E-value=9.2 Score=32.78 Aligned_cols=72 Identities=7% Similarity=0.037 Sum_probs=54.6
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK 618 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~ 618 (684)
++..+.+-+.++++.++..|+..|-.++..+.......+.....++.|..++...++.|...++..+.....
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 355566667788888888898888888887777666555555667777777777788999999988887654
No 144
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=69.29 E-value=11 Score=33.46 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=53.7
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhc------CCCHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQS------HDNNEIHEK 663 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~------~~~~~i~~~ 663 (684)
++..|..-+.+.++.++..++..|..+++.+... |...+-...+++.|..+.. ..+++|+++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 118 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK 118 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 3566777788899999999999999999886543 5556666667777777753 246899999
Q ss_pred HHHHHHHh
Q 035507 664 SVKILETY 671 (684)
Q Consensus 664 a~~ii~~~ 671 (684)
+..+|+.+
T Consensus 119 il~li~~W 126 (171)
T 1juq_A 119 VIELLYSW 126 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=68.87 E-value=12 Score=32.51 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=54.7
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhc------CCCHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQS------HDNNEIHEK 663 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~------~~~~~i~~~ 663 (684)
++..|..-+.+.++.++..++..|..+++.+... |...+-...+++.|..+.. ..+++|+++
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 116 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK 116 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence 4556777778899999999999999999876543 5566666667777777753 357899999
Q ss_pred HHHHHHHh
Q 035507 664 SVKILETY 671 (684)
Q Consensus 664 a~~ii~~~ 671 (684)
...+|+.+
T Consensus 117 il~li~~W 124 (149)
T 3g2s_A 117 ILELLYSW 124 (149)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 146
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=68.33 E-value=39 Score=34.29 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=87.6
Q ss_pred cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc
Q 035507 477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ 556 (684)
Q Consensus 477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~ 556 (684)
.+...+.-+..++-..+.. .-.++++.++.+-.+. +.++|+..+..|...+....+.. ..+++.|..++.
T Consensus 41 ~Kl~~L~q~~EL~l~~dps----Ll~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~ 110 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT----LLDNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLR 110 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG----GGGGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc
Confidence 4555555555544322211 1136888898888887 89999999999988876443332 235778888888
Q ss_pred cCCHhHHHHHHHHHHHhhc--------CCC-----HHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 557 NAEFDIKEEAAWAISNASS--------RGT-----HDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 557 ~~~~~v~~~a~~aL~nl~~--------~~~-----~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
+.++.+.+.++.+.+++-. ... .+....+.. +-..++++..+.+..++..+++.+..+...
T Consensus 111 d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 8899999998888877652 111 122222222 344666777888999999999999998754
No 147
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=67.21 E-value=8.1 Score=35.05 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=24.2
Q ss_pred hccccccCCccccccccCccccccCCccceeeccCcccccccccccCcccchhhhhc
Q 035507 137 EKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLK 193 (684)
Q Consensus 137 l~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~~ 193 (684)
|++|.|.+-+.+..+- ....+|+|+.|.+.+|+ +.-++ +...-|+|+.....
T Consensus 138 L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 138 VNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEEC
T ss_pred CCEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEee
Confidence 4555555443333332 12356677777776664 22222 33333455444443
No 148
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=65.41 E-value=13 Score=32.11 Aligned_cols=73 Identities=11% Similarity=-0.070 Sum_probs=58.5
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CChHHHHHHHHHHHHHHhc
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC------ADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~------~~~~v~~~al~~L~~il~~ 619 (684)
++..|.+-+.+.++.++..|+..|-.++..+...+...+....+++.|..++.. .+++|+..++..+......
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 355666777788999999999999999988888777777777788888888863 5788999999888877654
No 149
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=64.89 E-value=16 Score=32.15 Aligned_cols=72 Identities=6% Similarity=-0.002 Sum_probs=55.3
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CChHHHHHHHHHHHHHHh
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC-ADPKIVTVCLEGLENILK 618 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~-~~~~v~~~al~~L~~il~ 618 (684)
++..|.+-+.++++.++..|+..|-.++..+...+...+.....++.|..++.. .++.|+..++..+...-.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 345566667888999999999999999988777776666666677777777765 578899988887776654
No 150
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=62.06 E-value=20 Score=41.73 Aligned_cols=186 Identities=13% Similarity=0.088 Sum_probs=110.6
Q ss_pred ChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc---CCchHHHHHHHHHHH--HhccCCC
Q 035507 335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE---HTELSMLRIATTTLS--NLCRGKP 409 (684)
Q Consensus 335 ~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~---~~~~~v~~~a~~~L~--nL~~~~~ 409 (684)
.+..|+.+-.+..++||..|-.+|......-+..+..+ ++.++..|.. ..+.+-.+-|+++|. .+... -
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~ 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence 36677777788899999999999999987766655443 6788888865 556666667776654 11111 1
Q ss_pred CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC--------------------C---------------hHHH
Q 035507 410 RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR--------------------N---------------NDKI 454 (684)
Q Consensus 410 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~--------------------~---------------~~~~ 454 (684)
.........+++.+++....+.++++.-+-.+...+. .. + ...+
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~-~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIV-IGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKR 286 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHH-TSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHH-hcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 2344555677777777766666666554443322222 10 0 0001
Q ss_pred HHHHH--hchHHHHHHhc-CCCC--cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507 455 QAVIE--AGVCGRLVELL-GHPS--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS 529 (684)
Q Consensus 455 ~~~~~--~g~l~~L~~lL-~~~~--~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 529 (684)
+...+ .++...++.+. .... ......+++.+.++....+.. ....++..+++.+.++ ++.+|+.|..++.
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~----~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~ 361 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK----PDKRAVFSIISQISTK-HPEIIHLVVKSLL 361 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC----CCHHHHHHHHGGGGGC-CHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHhhcCC-CHHHHHHHHHHHH
Confidence 11111 12333344554 2344 677777777766665333211 1123566788888888 9999999998886
Q ss_pred HHh
Q 035507 530 NIA 532 (684)
Q Consensus 530 nl~ 532 (684)
.+.
T Consensus 362 ~il 364 (997)
T 1vsy_5 362 STC 364 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 151
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.74 E-value=25 Score=30.34 Aligned_cols=73 Identities=12% Similarity=-0.077 Sum_probs=58.3
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CChHHHHHHHHHHHHHHhc
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC------ADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~------~~~~v~~~al~~L~~il~~ 619 (684)
++..|.+-+.+.++.++..|+..|-.++..+...+...+.....++.|..++.. .++.|+..++..+......
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 355566667889999999999999999998877777777777888888888863 4778999988888776543
No 152
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=60.70 E-value=1.2e+02 Score=28.87 Aligned_cols=144 Identities=14% Similarity=0.058 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh
Q 035507 433 QVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 512 (684)
Q Consensus 433 ~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL 512 (684)
+.+...+.-...++...++.... .+++.++.+..+++..+|...+..+...+....+... .+++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 45556666666654233332222 4556666666666777777777777777654443222 2456777777
Q ss_pred ccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc-cCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCCh
Q 035507 513 IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ-NAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCI 591 (684)
Q Consensus 513 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l 591 (684)
.+. ++.+.+.+..+.+++ .|..++.+- +++..-..+.+|...+-. -
T Consensus 100 ~d~-d~~V~K~~I~~~~~i----------------Y~~~l~~i~~~~~~~~~~~~~W~~m~~l----------------K 146 (257)
T 3gs3_A 100 RDN-SAQVIKRVIQACGSI----------------YKNGLQYLCSLMEPGDSAEQAWNILSLI----------------K 146 (257)
T ss_dssp TCS-CHHHHHHHHHHHHHH----------------HHHHHHHHTTSSSCCHHHHHHHHHHHHH----------------H
T ss_pred cCC-CHHHHHHHHHHHHHH----------------HHHHHHHHhcCCCCcchHHHHHHHHHHH----------------H
Confidence 766 777777777666655 222222222 111111123333333222 2
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507 592 KPLCDLLQCADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 592 ~~L~~lL~~~~~~v~~~al~~L~~il~~ 619 (684)
..++++..+.+..++..+++.+..+...
T Consensus 147 ~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 147 AQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 2445556667788888888888887643
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=59.66 E-value=17 Score=34.06 Aligned_cols=70 Identities=13% Similarity=0.310 Sum_probs=51.6
Q ss_pred ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHh-hcCCCHHHHHHHHHHH
Q 035507 590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENL-QSHDNNEIHEKSVKIL 668 (684)
Q Consensus 590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L-~~~~~~~i~~~a~~ii 668 (684)
++..|..-+.+.++.++..++..|..+++..... |...+....+++.|..+ ....+++|++++..+|
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li 113 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI 113 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3556677778899999999999999999876543 34444444555555555 3456789999999999
Q ss_pred HHh
Q 035507 669 ETY 671 (684)
Q Consensus 669 ~~~ 671 (684)
+.+
T Consensus 114 ~~W 116 (226)
T 3zyq_A 114 QAW 116 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 154
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=58.74 E-value=12 Score=33.89 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=20.5
Q ss_pred ccCCccceeeccCcccccccccccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~~ 193 (684)
.+|+|++|.+.+|+.+..++ ....-|+|+.....
T Consensus 134 ~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence 46778888888877555443 33444555555544
No 155
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=56.48 E-value=1.9e+02 Score=29.96 Aligned_cols=240 Identities=13% Similarity=0.087 Sum_probs=121.2
Q ss_pred HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhC
Q 035507 285 EEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAA 363 (684)
Q Consensus 285 ~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~ 363 (684)
...++...+-.|+.++.+++ +.-|...-.+|..|-..-...|..+... +-..+.+++.. ....-....+.+++.+..
T Consensus 156 k~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIin 233 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIIN 233 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHHS
T ss_pred hhhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHHh
Confidence 44556677889999999998 8999888888888776444555444322 22334444432 222222356777777764
Q ss_pred CCC-CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHH
Q 035507 364 DSS-GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWAL 442 (684)
Q Consensus 364 ~~~-~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L 442 (684)
+-. ..++.-. .=....|+.+.....-...-.....++..++..++.- ...++..+++.=-..+..-..--+.-+
T Consensus 234 Gfa~PLKeehk-~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L----~~~vi~~LLk~WP~tns~KevlFL~el 308 (449)
T 2npp_B 234 GFALPLKEEHK-IFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTL----TEPVVMALLKYWPKTHSPKEVMFLNEL 308 (449)
T ss_dssp SCCSSCCHHHH-HHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGG----HHHHHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred ccCCCCcHHHH-HHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHh----HHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 432 2222100 0001222333321111222234445555544433211 111222222211123333333344444
Q ss_pred HhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHh--cCChHHHHHHh-----ccC
Q 035507 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN--HGAVPCLLALL-----IHN 515 (684)
Q Consensus 443 ~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~--~g~l~~L~~lL-----~~~ 515 (684)
..+....++...+.+.. .++..+..++.+++..|.+.|+....| +.....+.+ ..++|.+..-| .+-
T Consensus 309 eeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~p~L~~~s~~HW 382 (449)
T 2npp_B 309 EEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLISDNAAKILPIMFPSLYRNSKTHW 382 (449)
T ss_dssp HHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHHTTHHHHHHHHHHHHTSCTTCCS
T ss_pred HHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHHHHHhchhhhHHhhHHHHHHHHHHhc
Confidence 44441123333333332 477888888999888888888765533 111111111 12456666655 233
Q ss_pred CChhHHHHHHHHHHHHhcCChHH
Q 035507 516 HKNSIKKEVSWIISNIACGNREQ 538 (684)
Q Consensus 516 ~~~~v~~~a~~~L~nl~~~~~~~ 538 (684)
+..++..|..++.-+..-++..
T Consensus 383 -n~~V~~la~~vlk~l~e~d~~l 404 (449)
T 2npp_B 383 -NKTIHGLIYNALKLFMEMNQKL 404 (449)
T ss_dssp -STTHHHHHHHHHHHHHTTCHHH
T ss_pred -CHHHHHHHHHHHHHHHHHCHHH
Confidence 6789999999988887766544
No 156
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=56.12 E-value=1.8e+02 Score=29.60 Aligned_cols=232 Identities=13% Similarity=0.076 Sum_probs=112.0
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCC-ChHHHHHHHHHHHHhhCCC-
Q 035507 288 IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP-SDDVREQAVWALGNVAADS- 365 (684)
Q Consensus 288 i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~a~~~L~nLa~~~- 365 (684)
++...+-.|+.++.+++ +.-|...-.+|..|-..-...|..+.. .+-..+.+++... ...-....+.+++.+..+-
T Consensus 126 id~~Fi~~Ll~lfdSeD-prER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGfa 203 (403)
T 3fga_B 126 IDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFA 203 (403)
T ss_dssp SCHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccC
Confidence 44456778999999998 899998888888877644444444332 1123344443331 1111224556666665332
Q ss_pred CCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 035507 366 SGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGL 445 (684)
Q Consensus 366 ~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L 445 (684)
...++.-.. =....|+.+.....-...-.....++..++..+|.-. ..++..+++.=-..+..-..--+.-+..+
T Consensus 204 ~PLkeehk~-fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~----~~vi~~LLk~WP~tns~KevlFL~Ele~i 278 (403)
T 3fga_B 204 LPLKEEHKI-FLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLT----EPVVMALLKYWPKTHSPKEVMFLNELEEI 278 (403)
T ss_dssp SSCCHHHHH-HHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGH----HHHHHHHHHTCCSSCHHHHHHHHHHHHHH
T ss_pred CCchHHHHH-HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhH----HHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 112211000 0011222222111111222344445555544432111 11222222211123333333344444444
Q ss_pred ccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc---CChHHHHHHh-----ccCCC
Q 035507 446 SGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH---GAVPCLLALL-----IHNHK 517 (684)
Q Consensus 446 ~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~---g~l~~L~~lL-----~~~~~ 517 (684)
....++...+.+.. .++..+...+.+++..|.+.|+....| + ....++.. .++|.+..-| .+- +
T Consensus 279 Le~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnN-----e-~i~~li~~n~~~IlPii~p~L~~~~~~HW-n 350 (403)
T 3fga_B 279 LDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNSKTHW-N 350 (403)
T ss_dssp HTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHHHTTSCCS-C
T ss_pred HHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhcc-----H-HHHHHHHHhHHHHHHHHHHHHHHHHHHcc-C
Confidence 41123333333332 367788888899988888888766522 1 11112111 2445554444 334 7
Q ss_pred hhHHHHHHHHHHHHhcC
Q 035507 518 NSIKKEVSWIISNIACG 534 (684)
Q Consensus 518 ~~v~~~a~~~L~nl~~~ 534 (684)
..++..|..++.-+..-
T Consensus 351 ~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 351 KTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78998888888877653
No 157
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=55.79 E-value=25 Score=31.23 Aligned_cols=73 Identities=11% Similarity=-0.030 Sum_probs=57.1
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CChHHHHHHHHHHHHHHhc
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC------ADPKIVTVCLEGLENILKV 619 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~------~~~~v~~~al~~L~~il~~ 619 (684)
++..|.+-+.+.++.++..|+..|-.++..+...+...+.....++.|..++.. .++.|+..++..+...-..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 355666777888999999999999999987766666666677788888888762 4678999988888876653
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.66 E-value=22 Score=33.06 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=49.6
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHh-hcCCCHHHHHHHHHHHH
Q 035507 591 IKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENL-QSHDNNEIHEKSVKILE 669 (684)
Q Consensus 591 l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L-~~~~~~~i~~~a~~ii~ 669 (684)
+..|..-+.+.++.++..++..|..+++..... |...+-....++.+..+ ....+++|++++..+++
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~ 111 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ 111 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 556666778899999999999999999876442 33444444455555555 34567899999999988
Q ss_pred Hh
Q 035507 670 TY 671 (684)
Q Consensus 670 ~~ 671 (684)
..
T Consensus 112 ~W 113 (220)
T 1dvp_A 112 TW 113 (220)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 159
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=52.62 E-value=10 Score=35.51 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=55.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESM-PIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIAS 321 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~-~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~ 321 (684)
+++..|.+.|++.++.+|+.|+..|-.+...... -...+.....+..|+.+++...++.|+..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999988887765442 234444556677777777654447899999888887765
No 160
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=52.57 E-value=91 Score=36.20 Aligned_cols=191 Identities=15% Similarity=0.114 Sum_probs=111.9
Q ss_pred ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC----CCCcccHhHHHHHHH-
Q 035507 412 LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG----HPSPSVLTPALWTVG- 486 (684)
Q Consensus 412 ~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~----~~~~~v~~~al~~L~- 486 (684)
.......++.-|+.+-.+.-++|+..|-.+|.... ..-+..... ++|.+++.|+ ..+.+-.+-|+.+|.
T Consensus 127 ~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~-~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~ 200 (997)
T 1vsy_5 127 ASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCM-KQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLI 200 (997)
T ss_dssp CCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH-TTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTS
T ss_pred CChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhh
Confidence 44445677788888888889999999999999888 444433332 4555666553 345555667777654
Q ss_pred ----HHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC--C----------------------hHH
Q 035507 487 ----NIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG--N----------------------REQ 538 (684)
Q Consensus 487 ----nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~----------------------~~~ 538 (684)
..+..+-.... .+++.|+...... ++.+++-+-.+...+..+ . ..+
T Consensus 201 k~~~~~~~~d~~~~~-----~~~~ali~~~~~d-KpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~ 274 (997)
T 1vsy_5 201 KKIHRKLMTDYKDIG-----RLIFLLIECCRVN-ELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQ 274 (997)
T ss_dssp HHHHHHGGGCHHHHH-----HHHHHHHHTCSCS-SSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSH
T ss_pred hhhhhHHhcChHHHH-----HHHHHHHHhCcCC-CHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHH
Confidence 22222222221 2456666665555 667766665554444331 0 000
Q ss_pred HHHH-----------HH--hCCHHHHHHHhcc-CC--HhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC
Q 035507 539 IQAV-----------ID--AGLIGPLVNLLQN-AE--FDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD 602 (684)
Q Consensus 539 ~~~l-----------~~--~g~l~~Li~ll~~-~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~ 602 (684)
+... .+ .++...|++..++ .+ ......++..+.++...-+... ...+++.+.+.+.++.
T Consensus 275 ~~~~~~~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~-----~~~~v~~~~~~l~~dh 349 (997)
T 1vsy_5 275 VEAVKLAKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKP-----DKRAVFSIISQISTKH 349 (997)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCC-----CHHHHHHHHGGGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHhhcCCC
Confidence 1111 11 1234444555522 35 7777777777666664221100 1124667778888999
Q ss_pred hHHHHHHHHHHHHHHhc
Q 035507 603 PKIVTVCLEGLENILKV 619 (684)
Q Consensus 603 ~~v~~~al~~L~~il~~ 619 (684)
|.++..++.++..++..
T Consensus 350 p~~R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 350 PEIIHLVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888876
No 161
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=52.48 E-value=50 Score=27.77 Aligned_cols=95 Identities=20% Similarity=0.118 Sum_probs=61.0
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccC
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNT 626 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~ 626 (684)
++|.|+..|++.+..+...++..|...- .. +++.+.+.+.+.|.. ...+++..+...-+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~---------l~p~I~~vl~s~D~~---W~ywil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SI---------AMPHILTILQGNDIM---WKYWVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HH---------HHHHHHHHHHSSCHH---HHHHHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hh---------hHHHHHHHHHcCChH---HHHHHHHHHHHcCCHH---
Confidence 6789999999999998888887776542 12 345566667777764 4444555554332221
Q ss_pred CCCCcchhHHHHHHHHhchHHHHHHhhcC-----CCHHHHHHHHHHHHHhcCC
Q 035507 627 DSDIGDINQFAQLVEEAEGLEKIENLQSH-----DNNEIHEKSVKILETYWCG 674 (684)
Q Consensus 627 ~~~~~~~~~~~~~i~~~g~~~~L~~L~~~-----~~~~i~~~a~~ii~~~f~~ 674 (684)
.... ....|+.+... ...++.+.|.+|+++||.+
T Consensus 93 ---------~~~~-----l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 93 ---------NKQL-----VKSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp ---------HHHH-----HHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred ---------HHHH-----HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 1122 23456666555 3578999999999999974
No 162
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=51.95 E-value=3.4e+02 Score=32.31 Aligned_cols=133 Identities=11% Similarity=0.108 Sum_probs=73.7
Q ss_pred cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-C--ChHHHHHHHH------h
Q 035507 475 PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-G--NREQIQAVID------A 545 (684)
Q Consensus 475 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~--~~~~~~~l~~------~ 545 (684)
..+..+-++.|.++....+ +.+++.++-++-...+...++.|-.++.+-.. | +.......+. .
T Consensus 324 k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~ 395 (1323)
T 3s4w_B 324 KTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLK 395 (1323)
T ss_dssp HHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHH
Confidence 3444444555555443222 34566555544222144567888888877655 2 2222222222 3
Q ss_pred CCHHHHHHH----hccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507 546 GLIGPLVNL----LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVG 620 (684)
Q Consensus 546 g~l~~Li~l----l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~ 620 (684)
..++.++.+ +.+.++.++..+...-..+....+.-..+. ++..|+...-++...-+..++++|..+....
T Consensus 396 ~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqe-----Vl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~ 469 (1323)
T 3s4w_B 396 DICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQE-----VVGALVTHVCSGTEAEVDTALDVLLELIVLN 469 (1323)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHH-----HHHHHHhhhcCCCcHHHHHHHHHHHHHHhcC
Confidence 456666654 456788999888888777777654433333 3444444444455455666888888777643
No 163
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=51.90 E-value=19 Score=35.54 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=17.6
Q ss_pred ccCCccceeeccCcccccc-cccccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIF-SRGELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~-~~~~~~~~~l~~~~~~ 193 (684)
.+|+|++|.+.+|+.+.-- ......-|+|+...+.
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 4577777777777633210 0112234555555554
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=51.08 E-value=3.8 Score=36.79 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=28.5
Q ss_pred hccccccCCccccccccCccccccCCccceeeccCcccc
Q 035507 137 EKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMM 175 (684)
Q Consensus 137 l~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~Cp~l~ 175 (684)
|++|.|.+.+++..-.-.. -..+|+|+.|.+.+||++.
T Consensus 116 L~~L~Ls~C~~ITD~Gl~~-L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 116 MLEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCCHHHHHH-GGGCTTCCEEEEESCTTCC
T ss_pred CCEEEcCCCCcCCHHHHHH-HhcCCCCCEEECCCCCCCC
Confidence 5888888888776643322 2368999999999999877
No 165
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=49.51 E-value=38 Score=33.49 Aligned_cols=16 Identities=44% Similarity=0.509 Sum_probs=9.6
Q ss_pred HhhccccceeeecCCC
Q 035507 55 IVQLRGIEHLGLEGLQ 70 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~~ 70 (684)
+..+++|+.+.+.+..
T Consensus 62 ~~~~~~L~~L~l~~n~ 77 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQ 77 (347)
T ss_dssp GGGCTTCCEEECCSSC
T ss_pred hhhcCCccEEEccCCc
Confidence 4556677777665543
No 166
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.74 E-value=14 Score=34.43 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=54.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 035507 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESM-PIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIAS 321 (684)
Q Consensus 249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~-~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~ 321 (684)
+++..+.+.|++.++.+++.|+..|-.+...... -...+.....+..|+.++++..++.++..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999988887766432 234455556777888887655447899888887777664
No 167
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=46.68 E-value=31 Score=33.96 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=10.6
Q ss_pred ccCCccceeeccC
Q 035507 159 KFPSLEVLVVDDC 171 (684)
Q Consensus 159 ~fp~L~~~~v~~C 171 (684)
.+|+|+.|.+.+|
T Consensus 270 ~~~~L~~L~l~~~ 282 (336)
T 2ast_B 270 EIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEeccCc
Confidence 5788888888877
No 168
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=46.62 E-value=25 Score=34.20 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=15.4
Q ss_pred ccCCccceeeccCcccccccccccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~~ 193 (684)
.+|+|++|.+.+|.--.........-|+|+.....
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 34556666665553222222233333445444443
No 169
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=45.79 E-value=39 Score=33.40 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=10.7
Q ss_pred HhhccccceeeecCCC
Q 035507 55 IVQLRGIEHLGLEGLQ 70 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~~ 70 (684)
+..+++|+.+...+..
T Consensus 173 ~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp GGGCTTCSEEECTTSC
T ss_pred hccCCCCCEEEccCCc
Confidence 5677777777665543
No 170
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=45.60 E-value=74 Score=27.20 Aligned_cols=74 Identities=12% Similarity=0.161 Sum_probs=57.2
Q ss_pred HHHHHHHCCChHHHHhhccC------CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhc
Q 035507 581 QIKYLVTEGCIKPLCDLLQC------ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQS 654 (684)
Q Consensus 581 ~~~~l~~~g~l~~L~~lL~~------~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~ 654 (684)
....+++.|++..+-.-|.. ++..++...+.+|..+= . -...+.+.|.-..+..+..
T Consensus 53 l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP-I----------------~~e~Lk~SglGkvv~~l~k 115 (145)
T 2xpp_A 53 LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK-I----------------HKEHLVTSGVGKIVYFYSI 115 (145)
T ss_dssp THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-C----------------CHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC-C----------------CHHHhhcCCCCcchhhhhc
Confidence 45667889999998888862 46678888888877641 1 1367888888888899987
Q ss_pred CC--CHHHHHHHHHHHHHh
Q 035507 655 HD--NNEIHEKSVKILETY 671 (684)
Q Consensus 655 ~~--~~~i~~~a~~ii~~~ 671 (684)
|+ .+++.+.|..+++++
T Consensus 116 ~~~et~~nk~la~~Li~~W 134 (145)
T 2xpp_A 116 NPKESKEVRASAKALVQKW 134 (145)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHH
Confidence 76 578999999999986
No 171
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=45.09 E-value=49 Score=28.75 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=50.0
Q ss_pred ChHHHHhhcc-CCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHH-HHHhh---cCCCHHHHHHH
Q 035507 590 CIKPLCDLLQ-CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEK-IENLQ---SHDNNEIHEKS 664 (684)
Q Consensus 590 ~l~~L~~lL~-~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-L~~L~---~~~~~~i~~~a 664 (684)
++..|..-++ ..++.++..++..|..+++.+... |...+-....++. |..+. ..+..+|++++
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~------------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~ki 121 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR------------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKV 121 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH------------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 3556666676 478999999999999999876543 5555555556666 55543 23457899999
Q ss_pred HHHHHHh
Q 035507 665 VKILETY 671 (684)
Q Consensus 665 ~~ii~~~ 671 (684)
..+|+.+
T Consensus 122 l~li~~W 128 (157)
T 1elk_A 122 LNLIQSW 128 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 172
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=44.23 E-value=13 Score=35.61 Aligned_cols=108 Identities=12% Similarity=0.166 Sum_probs=65.4
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcC----C---CCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 257 GVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMR----E---DYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 257 ~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~----~---~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.+.+.++..++-+++.+.|+.+...-....+........+++.+.+ . .+..+|..++..+.|++......+.
T Consensus 98 ~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~- 176 (253)
T 3gae_A 98 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 176 (253)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-
T ss_pred hcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-
Confidence 3445678899999999999887754233333322223444444321 1 1367999999999999872111110
Q ss_pred HHhcCChHHHHHhcCC---------CChHHHHHHHHHHHHhhCCCCC
Q 035507 330 VIEHDAVPIFVKLLAS---------PSDDVREQAVWALGNVAADSSG 367 (684)
Q Consensus 330 i~~~g~i~~Li~lL~~---------~~~~v~~~a~~~L~nLa~~~~~ 367 (684)
+......+++.+.. .+++....++-+||++...++.
T Consensus 177 --~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~ 221 (253)
T 3gae_A 177 --DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 221 (253)
T ss_dssp --CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGG
T ss_pred --hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHH
Confidence 12233445554442 3678888999999999865443
No 173
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=44.06 E-value=1.3e+02 Score=27.66 Aligned_cols=134 Identities=8% Similarity=-0.052 Sum_probs=77.7
Q ss_pred cCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHH
Q 035507 387 EHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGR 465 (684)
Q Consensus 387 ~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~ 465 (684)
.++.-+.+..++..+........ ...++.+-.++. .++..+....+.+++.+. ...+ ..+.+.
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~~-------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~-~~~~--------~~~~~~ 128 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRFS-------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWV-ALHL--------TELPTI 128 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGCC-------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHH-HHSG--------GGHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHH-HHCh--------HHHHHH
Confidence 44556666666666665432211 122333333443 345666665555565554 1111 124466
Q ss_pred HHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH
Q 035507 466 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID 544 (684)
Q Consensus 466 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 544 (684)
+.....+++.-++..|+..+..... ...... .++.+-..+.++ +.-|++..+|+|..++..+++....++.
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~--~~~~~~-----~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKE--KTNQDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGG--GCCHHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHH--CCCHHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 7888888888888877664422211 112221 234444466677 8899999999999999988877665554
No 174
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=43.75 E-value=51 Score=33.84 Aligned_cols=106 Identities=13% Similarity=0.178 Sum_probs=66.3
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 257 GVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRE-------DYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 257 ~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~-------~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.+.+..+..++-+++.++++.+...-....+......+.+++.+... .+..++..++..+.|++......+.
T Consensus 270 ~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~- 348 (425)
T 3pst_A 270 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 348 (425)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS-
T ss_pred hcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc-
Confidence 44466789999999999999876532233332222345556555321 1257899999999999972111110
Q ss_pred HHhcCChHHHHHhcC---------CCChHHHHHHHHHHHHhhCCC
Q 035507 330 VIEHDAVPIFVKLLA---------SPSDDVREQAVWALGNVAADS 365 (684)
Q Consensus 330 i~~~g~i~~Li~lL~---------~~~~~v~~~a~~~L~nLa~~~ 365 (684)
+...++.+...+. ..+++....++.|||+|....
T Consensus 349 --~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 349 --DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp --CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred --hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1223445555554 247888899999999998543
No 175
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=41.42 E-value=16 Score=38.38 Aligned_cols=16 Identities=13% Similarity=0.027 Sum_probs=10.4
Q ss_pred HhhccccceeeecCCC
Q 035507 55 IVQLRGIEHLGLEGLQ 70 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~~ 70 (684)
+..+++|+.+.+.+-.
T Consensus 208 l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CTTCTTCSEEECCSSC
T ss_pred cccCCCCCEEECcCCc
Confidence 5667777777665543
No 176
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=40.58 E-value=2.2e+02 Score=33.89 Aligned_cols=205 Identities=14% Similarity=0.091 Sum_probs=103.5
Q ss_pred ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCCh----------hhh
Q 035507 347 SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLF----------DQV 416 (684)
Q Consensus 347 ~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~----------~~~ 416 (684)
+..+.+.-+.++.++..... ...+..++=++..+.+...++.+-.++.+......-... ...
T Consensus 323 ~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 323 EKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp CHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH
Confidence 56677777777777654321 122333332222233334556666666665555421111 122
Q ss_pred hchHHHHH----HHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507 417 RPALPALA----QLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD 492 (684)
Q Consensus 417 ~~~l~~L~----~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 492 (684)
...++.++ .++.+.++.++.-+...-.++- ...+. ..+..++..|+..+.+++..-...|+.+|..++..+
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF-~~fd~----~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~ 469 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAF-KFFDT----YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLN 469 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH-HSSCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-Hhccc----hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcC
Confidence 34444444 3456788888877777666555 33332 222345566666665566556667999999998776
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHH
Q 035507 493 DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAA 567 (684)
Q Consensus 493 ~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~ 567 (684)
+......- -.+..++..+.+-....+| ....+++.++.+.+..-...+...+.-.+-+.+.+.+.+.++...
T Consensus 470 ~~~l~~~a--~~l~giLD~l~~l~~~QiR-klf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGI 541 (1323)
T 3s4w_B 470 ASAMRLNA--AFVKGILDYLENMSPQQIR-KIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGI 541 (1323)
T ss_dssp HHHHHHTH--HHHHGGGGGGGGCCHHHHH-HHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHhHHH--HHHHHHHHhhcCCCHHHHH-HHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhH
Confidence 64333211 1222333333333123344 447777777642100000011222333444566677777776544
No 177
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=40.04 E-value=3.1e+02 Score=27.71 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=50.1
Q ss_pred HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407 (684)
Q Consensus 328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~ 407 (684)
...++...+..|+.++.++|+.-|+....+|..+-+.-...|..+.. .+-..+...+.......-...++..++.+..+
T Consensus 168 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIng 246 (392)
T 2jak_A 168 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING 246 (392)
T ss_dssp TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 34445567889999999999999999999998887655555544332 12233444443333333334555666666666
Q ss_pred C
Q 035507 408 K 408 (684)
Q Consensus 408 ~ 408 (684)
-
T Consensus 247 f 247 (392)
T 2jak_A 247 F 247 (392)
T ss_dssp C
T ss_pred c
Confidence 5
No 178
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=39.90 E-value=52 Score=31.28 Aligned_cols=35 Identities=14% Similarity=-0.033 Sum_probs=18.6
Q ss_pred ccCCccceeeccCcccccccccccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~~ 193 (684)
.+|+|+.|.+.+|+--.+.......-++|+.+...
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 45677777777764322222223344666665554
No 179
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=39.56 E-value=11 Score=35.32 Aligned_cols=17 Identities=6% Similarity=0.313 Sum_probs=9.8
Q ss_pred CCccceeeccCcccccc
Q 035507 161 PSLEVLVVDDCHNMMIF 177 (684)
Q Consensus 161 p~L~~~~v~~Cp~l~~~ 177 (684)
++|++|.+.+|+.++.+
T Consensus 179 ~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp CEEEEEECTTCTTCCEE
T ss_pred CCCCEEEcCCCCCcccC
Confidence 55666666666555543
No 180
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=39.39 E-value=60 Score=27.59 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=54.2
Q ss_pred CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCC-ChHHHHhhccCCC--------hHHHHHHHHHHHHHH
Q 035507 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEG-CIKPLCDLLQCAD--------PKIVTVCLEGLENIL 617 (684)
Q Consensus 547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g-~l~~L~~lL~~~~--------~~v~~~al~~L~~il 617 (684)
+++.|.+-|...++.++..|+..|..++..|++.+...+.+.- .|..+.+.--.++ ..|+..|-+++..|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 6778888888899999999999999999999988888776642 2222222221222 358888888888777
Q ss_pred hccc
Q 035507 618 KVGE 621 (684)
Q Consensus 618 ~~~~ 621 (684)
....
T Consensus 130 d~~~ 133 (140)
T 1vdy_A 130 SEEN 133 (140)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 6544
No 181
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=39.24 E-value=43 Score=33.65 Aligned_cols=106 Identities=12% Similarity=0.167 Sum_probs=64.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcC----C---CCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507 257 GVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMR----E---DYPQLQFQAAWALTNIASGTSENTKV 329 (684)
Q Consensus 257 ~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~----~---~~~~v~~~A~~~L~~l~~~~~~~~~~ 329 (684)
.+.+..+..++-+++.++++.+...-....+........+++.+.. . .+..++..++..+.|++......+.
T Consensus 207 ~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~- 285 (362)
T 3l3f_X 207 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 285 (362)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS-
T ss_pred hcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc-
Confidence 4446678999999999999987653223333221123334444321 1 1257999999999999972111110
Q ss_pred HHhcCChHHHHHhcC---------CCChHHHHHHHHHHHHhhCCC
Q 035507 330 VIEHDAVPIFVKLLA---------SPSDDVREQAVWALGNVAADS 365 (684)
Q Consensus 330 i~~~g~i~~Li~lL~---------~~~~~v~~~a~~~L~nLa~~~ 365 (684)
+....+.+...+. ..+++....++.|||+|....
T Consensus 286 --~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 286 --DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp --CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred --hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1223445555554 257888899999999998543
No 182
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=38.42 E-value=10 Score=39.94 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=23.9
Q ss_pred ccCCccceeeccCcccccccccccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~~ 193 (684)
.+++|+.|.+.+|+.+..++......++|+...+.
T Consensus 198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred cCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 56788888888888777666655555566555554
No 183
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=35.65 E-value=78 Score=30.01 Aligned_cols=98 Identities=14% Similarity=0.070 Sum_probs=60.2
Q ss_pred CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC-------CchHHHHHHHHHHHHhccCC--CCCChhh
Q 035507 345 SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH-------TELSMLRIATTTLSNLCRGK--PRPLFDQ 415 (684)
Q Consensus 345 ~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~-------~~~~v~~~a~~~L~nL~~~~--~~~~~~~ 415 (684)
+.++..+-.++++++|+..+....+..+........++..+... .+..++-.++..+.|++-.. .....
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~-- 178 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL-- 178 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCT--
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchH--
Confidence 45677888999999999888763355554432334445544221 24567777788888887643 11112
Q ss_pred hhchHHHHHHHhc---------CCcHHHHHHHHHHHHhhc
Q 035507 416 VRPALPALAQLIH---------SNDEQVLTDACWALFGLS 446 (684)
Q Consensus 416 ~~~~l~~L~~lL~---------~~d~~v~~~al~~L~~L~ 446 (684)
.....+...+. ..|++....++.+++++.
T Consensus 179 --e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~ 216 (253)
T 3gae_A 179 --ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 216 (253)
T ss_dssp --THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHH
Confidence 22233344333 237788888899998888
No 184
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=34.39 E-value=30 Score=35.81 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=8.7
Q ss_pred HhhccccceeeecCC
Q 035507 55 IVQLRGIEHLGLEGL 69 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~ 69 (684)
+..|++|+.|.+...
T Consensus 84 ~~~l~~L~~L~Ls~n 98 (440)
T 3zyj_A 84 FKHLRHLEILQLSRN 98 (440)
T ss_dssp TSSCSSCCEEECCSS
T ss_pred hhCCCCCCEEECCCC
Confidence 455666666655443
No 185
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=33.79 E-value=29 Score=36.34 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=11.7
Q ss_pred HhhccccceeeecCCC
Q 035507 55 IVQLRGIEHLGLEGLQ 70 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~~ 70 (684)
+..+++|+.+...+-.
T Consensus 229 ~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 229 VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CTTCTTCSEEECCSSC
T ss_pred ccccCCCCEEEeeCCc
Confidence 6678888888766543
No 186
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=33.51 E-value=55 Score=26.15 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=31.3
Q ss_pred HHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 035507 637 AQLVEEAEGLEKIENLQSH-DNNEIHEKSVKILETYW 672 (684)
Q Consensus 637 ~~~i~~~g~~~~L~~L~~~-~~~~i~~~a~~ii~~~f 672 (684)
.+.+.+.+.=..+..|..| ++++|...|..++.++-
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK 83 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWK 83 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 4788888888899999776 99999999999998774
No 187
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=33.22 E-value=84 Score=30.21 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=6.7
Q ss_pred HhhccccceeeecC
Q 035507 55 IVQLRGIEHLGLEG 68 (684)
Q Consensus 55 ~~~l~~l~~~~~~~ 68 (684)
+..+++|+.|.+.+
T Consensus 86 l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 86 LANLKNLGWLFLDE 99 (291)
T ss_dssp GTTCTTCCEEECCS
T ss_pred cccCCCCCEEECCC
Confidence 44455555554433
No 188
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=33.16 E-value=12 Score=40.62 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=23.4
Q ss_pred ccCCccceeeccCcccccccccccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~~ 193 (684)
.+|+|+.|.+.+|..+.-+.......|+|+.....
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 46899999999886665544444455666666544
No 189
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=32.79 E-value=40 Score=36.10 Aligned_cols=8 Identities=25% Similarity=0.609 Sum_probs=3.3
Q ss_pred ccccceee
Q 035507 58 LRGIEHLG 65 (684)
Q Consensus 58 l~~l~~~~ 65 (684)
+++|+.+.
T Consensus 324 l~~L~~L~ 331 (570)
T 2z63_A 324 LKSLKRLT 331 (570)
T ss_dssp CSSCCEEE
T ss_pred ccccCEEe
Confidence 34444443
No 190
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=32.29 E-value=1.1e+02 Score=26.36 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=52.3
Q ss_pred HHHHHHHhc-cCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHH-HHhhccC---CChHHHHHHHHHHHHHHh
Q 035507 548 IGPLVNLLQ-NAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKP-LCDLLQC---ADPKIVTVCLEGLENILK 618 (684)
Q Consensus 548 l~~Li~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~-L~~lL~~---~~~~v~~~al~~L~~il~ 618 (684)
+..|.+-+. +.++.++..|+..|-.++..+.......+.+...++. |+.++.. ....|+..++..+.....
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 445566666 4788999999999999998877777776666677776 6777642 345788888888877655
No 191
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=31.54 E-value=61 Score=33.24 Aligned_cols=101 Identities=9% Similarity=0.067 Sum_probs=62.3
Q ss_pred CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC-------CChhHHHHHHHHHHHHhcCChHHHHHHHH
Q 035507 472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-------HKNSIKKEVSWIISNIACGNREQIQAVID 544 (684)
Q Consensus 472 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 544 (684)
...+..+..++|+++|+........+.+.+......+++.+... .+..++.+++..+-|++....... .+
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SD 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---SC
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---ch
Confidence 44667888999999999876653333332222344455544211 145688888889999976311100 01
Q ss_pred hCCHHHHHHHhc---------cCCHhHHHHHHHHHHHhhc
Q 035507 545 AGLIGPLVNLLQ---------NAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 545 ~g~l~~Li~ll~---------~~~~~v~~~a~~aL~nl~~ 575 (684)
..+.+.+.+++. ..+.+....++-|+++++.
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 223455666555 3488999999999999986
No 192
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=30.93 E-value=35 Score=36.81 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=20.5
Q ss_pred ccCCccceeeccCccccc--ccccccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMI--FSRGELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~--~~~~~~~~~~l~~~~~~ 193 (684)
.+|+|++|.+..|+ +.- +..-...-|+|+.....
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVL 322 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCc
Confidence 57888999888887 441 11112234666666554
No 193
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=30.24 E-value=1.6e+02 Score=33.55 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=20.2
Q ss_pred HhhccccceeeecCCC-chh--hHHHHHHHH-hhhCCCCCcEEEecC
Q 035507 55 IVQLRGIEHLGLEGLQ-EQD--VQNFVNELV-KLQGSSQLKHLYISG 97 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~~-~~~--~~~~l~~l~-~~~~~~~l~~l~~~~ 97 (684)
+..|++|+.|.+.+.. ..+ .-..+..+. ...+++.|++|....
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 4556667766655443 212 222233332 234455666665443
No 194
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=29.33 E-value=46 Score=37.45 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=5.5
Q ss_pred CCccceeeccC
Q 035507 161 PSLEVLVVDDC 171 (684)
Q Consensus 161 p~L~~~~v~~C 171 (684)
|+|++|.+.+|
T Consensus 294 ~~L~~L~Ls~n 304 (768)
T 3rgz_A 294 DTLTGLDLSGN 304 (768)
T ss_dssp TTCSEEECCSS
T ss_pred CcCCEEECcCC
Confidence 45555554444
No 195
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=28.84 E-value=55 Score=30.61 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=29.3
Q ss_pred hccccccCCccccccccCccccccCCccceeeccCcccccccc-cccCcccchhhhhc
Q 035507 137 EKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSR-GELSAPMLHKVQLK 193 (684)
Q Consensus 137 l~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~Cp~l~~~~~-~~~~~~~l~~~~~~ 193 (684)
|++|.|.+- +|+++-.+. .-.+|+|+.|.+.++. ++.+.. ....-++|+.+...
T Consensus 133 L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 133 LKELRLNTN-QLQSIPAGA-FDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp CCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred ccEEECcCC-cCCccCHHH-cCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEee
Confidence 355555443 344433321 1256888888888874 443333 23344677766665
No 196
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=28.67 E-value=1.9e+02 Score=25.34 Aligned_cols=73 Identities=7% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHCCChHHHHhhcc------CCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC
Q 035507 582 IKYLVTEGCIKPLCDLLQ------CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH 655 (684)
Q Consensus 582 ~~~l~~~g~l~~L~~lL~------~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~ 655 (684)
...+++.|++..+...|. -+...++...+.+|..+ +-.. ..+.++|.=..+..+..|
T Consensus 69 ~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----PI~~-------------e~Lk~SglGkvV~~l~k~ 131 (170)
T 3nfq_A 69 ADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----PVKT-------------EHLKESGLGRVVIFYTKS 131 (170)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCH-------------HHHHHHSHHHHHHHHHHC
T ss_pred HHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----CCCH-------------HHHhhCCCCceeeehhcC
Q ss_pred CC--HHHHHHHHHHHHHh
Q 035507 656 DN--NEIHEKSVKILETY 671 (684)
Q Consensus 656 ~~--~~i~~~a~~ii~~~ 671 (684)
+. +++.+.|..+++++
T Consensus 132 ~~et~~nkrla~~Li~~W 149 (170)
T 3nfq_A 132 KRVEAQLARLAEKLIAEW 149 (170)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHH
No 197
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=28.63 E-value=1.1e+02 Score=33.21 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=8.9
Q ss_pred HhhccccceeeecCC
Q 035507 55 IVQLRGIEHLGLEGL 69 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~ 69 (684)
+..|++|+.|.+.+.
T Consensus 61 l~~l~~L~~L~Ls~N 75 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGN 75 (605)
T ss_dssp GGGCTTCCEEECTTS
T ss_pred HccCCCCCEEEeeCC
Confidence 455666666665544
No 198
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=28.49 E-value=57 Score=32.74 Aligned_cols=100 Identities=9% Similarity=0.066 Sum_probs=61.2
Q ss_pred CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc--------cCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 035507 472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI--------HNHKNSIKKEVSWIISNIACGNREQIQAVI 543 (684)
Q Consensus 472 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~--------~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 543 (684)
...+..+..++|+++|+-.+.....+.+.+......+++.+. .. +..++..++..+-|++....... .
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~-nkNl~IA~ATL~lNlAv~~~~~~---~ 285 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQ-SQNLAIAVSTLIFNYSALVTKGN---S 285 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHH-HHHHHHHHHHHHHHHHHHHHHTC---S
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCC-CchHHHHHHHHHHHHHHHHhccc---c
Confidence 446678889999999998766533333322112233333331 12 45688888889999976311100 0
Q ss_pred HhCCHHHHHHHhc---------cCCHhHHHHHHHHHHHhhc
Q 035507 544 DAGLIGPLVNLLQ---------NAEFDIKEEAAWAISNASS 575 (684)
Q Consensus 544 ~~g~l~~Li~ll~---------~~~~~v~~~a~~aL~nl~~ 575 (684)
+..+.+.+.+++. ..+.+....++-|+++++.
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 0223455666665 3588999999999999986
No 199
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=28.17 E-value=26 Score=36.52 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=8.4
Q ss_pred HhhccccceeeecCC
Q 035507 55 IVQLRGIEHLGLEGL 69 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~ 69 (684)
+..|++|+.|.+.+-
T Consensus 95 ~~~l~~L~~L~Ls~n 109 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRN 109 (452)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred cCCCCCCCEEECCCC
Confidence 445666666655443
No 200
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=27.67 E-value=51 Score=33.23 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=23.7
Q ss_pred HhhccccceeeecCCCchh--h--H--HHHHHHHhhhCCCCCcEEEecCc
Q 035507 55 IVQLRGIEHLGLEGLQEQD--V--Q--NFVNELVKLQGSSQLKHLYISGS 98 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~~~~~--~--~--~~l~~l~~~~~~~~l~~l~~~~~ 98 (684)
+..+++|+.|.+....... . . ..+.. +...+|.|+.|...+.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~--ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP--VLDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHH--HHHTCTTCCEEEEECC
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHH--HHhcCCCCcEEEEeCC
Confidence 5577888888775432100 0 0 01222 2467788888887654
No 201
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=27.16 E-value=39 Score=34.94 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=17.3
Q ss_pred ccCCccceeeccCcccccccccc-cCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIFSRGE-LSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~~~~~-~~~~~l~~~~~~ 193 (684)
.+|+|+.|.+.++ ++..+..+. ..-++|+.+...
T Consensus 253 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 253 NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECC
T ss_pred CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcC
Confidence 3466666666666 333333222 233566666555
No 202
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=26.66 E-value=1.1e+02 Score=32.02 Aligned_cols=53 Identities=23% Similarity=0.192 Sum_probs=32.3
Q ss_pred hccccccCCccccccccCccccccCCccceeeccCccccccccc-ccCcccchhhhhc
Q 035507 137 EKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRG-ELSAPMLHKVQLK 193 (684)
Q Consensus 137 l~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~Cp~l~~~~~~-~~~~~~l~~~~~~ 193 (684)
|++|.|.+- ++..+-.+ .+.+|+|+++.+.+| +++.++.+ ...-++|+.....
T Consensus 423 L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 423 IKVLDLHSN-KIKSIPKQ--VVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCC-cccccchh--hhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECc
Confidence 455555553 34444332 357889999999888 45555554 4445667666665
No 203
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=26.54 E-value=2.4e+02 Score=25.96 Aligned_cols=142 Identities=11% Similarity=0.088 Sum_probs=79.2
Q ss_pred HHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC-CcHHHHHHHH-HHHHhhccCCChHHHHHHH
Q 035507 381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS-NDEQVLTDAC-WALFGLSGDRNNDKIQAVI 458 (684)
Q Consensus 381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~al-~~L~~L~~~~~~~~~~~~~ 458 (684)
++..|-.+...+.+..|+..+....... ....++.+-.++.. ++..+....+ .+++.+. ...+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~-~~~p------- 129 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHI-------NETHIPFLEELIVTKSWWDSVDSIVPTFLGDIF-LKHP------- 129 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGC-------CGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHH-HHCG-------
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHccCCChHHHHHhhHHHHHHHH-HHCH-------
Confidence 4444435556666666666665332111 12234444444443 4444444332 3333333 1111
Q ss_pred HhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHH
Q 035507 459 EAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQ 538 (684)
Q Consensus 459 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 538 (684)
....+.+.....+++.-++..|+..+ +......... ..++.+...+.++ +.-|++..+|+|..++...++.
T Consensus 130 -~~~~~~l~~W~~s~~~w~rR~ai~~~--l~~~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~ 200 (232)
T 3jxy_A 130 -ELISAYIPKWIASDNIWLQRAAILFQ--LKYKQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDV 200 (232)
T ss_dssp -GGGGGTHHHHHHSSCHHHHHHHHHTT--TTCGGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHH
T ss_pred -HHHHHHHHHHhcCCchHHHHHHHHHH--HHHHhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHH
Confidence 12446677788888888888776554 2221111111 1234555666777 8999999999999999988888
Q ss_pred HHHHHHhC
Q 035507 539 IQAVIDAG 546 (684)
Q Consensus 539 ~~~l~~~g 546 (684)
...+++..
T Consensus 201 v~~fl~~~ 208 (232)
T 3jxy_A 201 VWEYVQNN 208 (232)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHC
Confidence 77776653
No 204
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=26.52 E-value=78 Score=34.45 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=10.3
Q ss_pred HhhccccceeeecCCC
Q 035507 55 IVQLRGIEHLGLEGLQ 70 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~~ 70 (684)
+..|++|+.|.+....
T Consensus 83 l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENK 98 (605)
T ss_dssp GGGCTTCCEEECCSSC
T ss_pred hccCCCCCEEECcCCC
Confidence 5667777777665543
No 205
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=25.43 E-value=55 Score=29.97 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=17.2
Q ss_pred ccCCccceeeccCccccccccc-ccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIFSRG-ELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~~~~-~~~~~~l~~~~~~ 193 (684)
.+|+|+.|.+.++. ++.+..+ ...-++|+.+.+.
T Consensus 126 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 126 DLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeC
Confidence 45667777766664 3323322 3334555555554
No 206
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=25.19 E-value=65 Score=34.81 Aligned_cols=136 Identities=23% Similarity=0.225 Sum_probs=0.0
Q ss_pred HhhccccceeeecCCCchhhHHHHHHHHhhhCCCCCcEEEecCcccC-CCcccccccccccc-ccccceeecccccccch
Q 035507 55 IVQLRGIEHLGLEGLQEQDVQNFVNELVKLQGSSQLKHLYISGSRLA-LNPEESERPEKLSY-DIPSNEIILEDDISIAK 132 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~l~~l~~~~~~~~-l~~~~~~~c~~le~-ii~~~~~~~~~~~~~~~ 132 (684)
+..+++|+.+.+.+....+.......+. .++.|+.|......-. +.+.....|.++++ -+...............
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLR---NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTT---TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhccCcCCEEECCCCccccccCcchhcc---cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Q ss_pred hhhhhccccccC-------------CccccccccCccccc------------cCCccceeeccCcccccccccccCcccc
Q 035507 133 SLFIEKKLTLSY-------------LKSLTSFCSGSCAIK------------FPSLEVLVVDDCHNMMIFSRGELSAPML 187 (684)
Q Consensus 133 ~~~~l~~l~l~~-------------Lp~L~~~~~~~~~~~------------fp~L~~~~v~~Cp~l~~~~~~~~~~~~l 187 (684)
.+-.|++|.|.+ +|+|+.+.-+.+.+. +|+|++|.+.+|.--.+.+.....-|+|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Q ss_pred hhhhhc
Q 035507 188 HKVQLK 193 (684)
Q Consensus 188 ~~~~~~ 193 (684)
+.....
T Consensus 503 ~~L~Ls 508 (606)
T 3t6q_A 503 NHVDLS 508 (606)
T ss_dssp CEEECC
T ss_pred CEEECC
No 207
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=25.10 E-value=90 Score=33.45 Aligned_cols=42 Identities=7% Similarity=0.014 Sum_probs=20.7
Q ss_pred HhhccccceeeecCCCchh-hHHHHHHHHhhhCCCCCcEEEecCc
Q 035507 55 IVQLRGIEHLGLEGLQEQD-VQNFVNELVKLQGSSQLKHLYISGS 98 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~~~~~-~~~~l~~l~~~~~~~~l~~l~~~~~ 98 (684)
...+++|++|.+......+ ....+..+ ...+++|+.|....+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~--~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETI--ARNCRSLVSVKVGDF 230 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHH--HHHCTTCCEEECSSC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHH--HhhCCCCcEEeccCc
Confidence 4567888888665443210 01223322 233456666655443
No 208
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=25.06 E-value=38 Score=30.61 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=6.0
Q ss_pred hhccccceeeec
Q 035507 56 VQLRGIEHLGLE 67 (684)
Q Consensus 56 ~~l~~l~~~~~~ 67 (684)
..+++|+.|.+.
T Consensus 49 ~~l~~L~~L~l~ 60 (208)
T 2o6s_A 49 DELTSLTQLYLG 60 (208)
T ss_dssp TTCTTCSEEECC
T ss_pred cccccCcEEECC
Confidence 345555555444
No 209
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=24.76 E-value=1.8e+02 Score=27.99 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=7.2
Q ss_pred ccCCccceeeccC
Q 035507 159 KFPSLEVLVVDDC 171 (684)
Q Consensus 159 ~fp~L~~~~v~~C 171 (684)
.+|+|+.|.+.+|
T Consensus 171 ~l~~L~~L~l~~n 183 (308)
T 1h6u_A 171 NLSKLTTLKADDN 183 (308)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 3455666655555
No 210
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=24.53 E-value=1e+02 Score=28.97 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=22.7
Q ss_pred ccCCccceeeccCccccccccc-ccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIFSRG-ELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~~~~-~~~~~~l~~~~~~ 193 (684)
.+|+|+.|.+.+| +++.+..+ ...-++|+.+.+.
T Consensus 179 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 179 KLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEec
Confidence 4688999999888 45544444 3345677766665
No 211
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=24.48 E-value=1.7e+02 Score=27.89 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=10.6
Q ss_pred HhhccccceeeecCCC
Q 035507 55 IVQLRGIEHLGLEGLQ 70 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~~ 70 (684)
+..|++|+.|.+.+..
T Consensus 64 ~~~l~~L~~L~L~~n~ 79 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNK 79 (291)
T ss_dssp GGGCTTCCEEECCSSC
T ss_pred HhcCCCCCEEEccCCc
Confidence 5667777777665544
No 212
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=24.16 E-value=1.3e+02 Score=30.22 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=7.6
Q ss_pred HHhhccccceeeecC
Q 035507 54 LIVQLRGIEHLGLEG 68 (684)
Q Consensus 54 ~~~~l~~l~~~~~~~ 68 (684)
.+..+++|+.+.+.+
T Consensus 64 ~~~~l~~L~~L~L~~ 78 (390)
T 3o6n_A 64 LLDSFRQVELLNLND 78 (390)
T ss_dssp HHHHCCCCSEEECTT
T ss_pred HhcccccCcEEECCC
Confidence 344555555554443
No 213
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=23.76 E-value=1.7e+02 Score=30.74 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=19.1
Q ss_pred ccCCccceeeccCccccccc-ccccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIFS-RGELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~~-~~~~~~~~l~~~~~~ 193 (684)
.+|+|+.|.+.+|. ++.+. .....-++|+.+...
T Consensus 471 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 471 LFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp GCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECC
T ss_pred cCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEec
Confidence 46777777777773 44222 223444566655554
No 214
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=23.68 E-value=4e+02 Score=23.91 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=68.9
Q ss_pred ChHHHHHhcCC------CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC--chHHHHHHHHHHHHhcc
Q 035507 335 AVPIFVKLLAS------PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT--ELSMLRIATTTLSNLCR 406 (684)
Q Consensus 335 ~i~~Li~lL~~------~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~--~~~v~~~a~~~L~nL~~ 406 (684)
.+|.++.++.+ .+.......+.....+..+..-.-+ ..-...+++++.++.... ...++..|+..++.+|+
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~le-pYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFID-PYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYD 119 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCG-GGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 46777765533 3555556666666666655432111 112235777777764321 22799999999999998
Q ss_pred CCCCCChhhhhchHHHHHHHhcCC--cHHHHHHHHHHHHhhc
Q 035507 407 GKPRPLFDQVRPALPALAQLIHSN--DEQVLTDACWALFGLS 446 (684)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~al~~L~~L~ 446 (684)
.-..........+...+.+.+.++ ......-|+..|..+.
T Consensus 120 ~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 120 TYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 764444444566677777666543 4667777888888877
No 215
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=23.53 E-value=1.1e+02 Score=28.96 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=9.1
Q ss_pred HhhccccceeeecCC
Q 035507 55 IVQLRGIEHLGLEGL 69 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~ 69 (684)
+..+++|+.+.+.+.
T Consensus 59 l~~l~~L~~L~l~~n 73 (272)
T 3rfs_A 59 IQYLPNVRYLALGGN 73 (272)
T ss_dssp GGGCTTCCEEECTTS
T ss_pred cccCCCCcEEECCCC
Confidence 455666776665544
No 216
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=22.30 E-value=3.6e+02 Score=22.92 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=48.5
Q ss_pred hHHHHhhccC--CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC------CCHHHHH
Q 035507 591 IKPLCDLLQC--ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH------DNNEIHE 662 (684)
Q Consensus 591 l~~L~~lL~~--~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~------~~~~i~~ 662 (684)
++.|..-|.+ .+...+..+|..|..++..|.... .....+....+..|...+.. ....|++
T Consensus 61 m~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~v-----------v~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~ 129 (148)
T 1inz_A 61 MSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV-----------SQQCKENMYAVQTLKDFQYVDRDGKDQGVNVRE 129 (148)
T ss_dssp HHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHH
T ss_pred HHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHH-----------HHHHHHhHHHHHhhcceeeeCCCCcCchHHHHH
Confidence 4445555554 478899999999999999876542 22222233345566654332 2467999
Q ss_pred HHHHHHHHhcCCCCC
Q 035507 663 KSVKILETYWCGRVV 677 (684)
Q Consensus 663 ~a~~ii~~~f~~e~~ 677 (684)
+|..+++-.-+++-.
T Consensus 130 kAk~l~~LL~D~e~L 144 (148)
T 1inz_A 130 KAKQLVALLRDEDRL 144 (148)
T ss_dssp HHHHHHHHHTSCCSC
T ss_pred HHHHHHHHhCCHHHH
Confidence 999999865444433
No 217
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=22.25 E-value=50 Score=30.49 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=21.4
Q ss_pred cccCCccceeeccCccccccccc-ccCcccchhhhhc
Q 035507 158 IKFPSLEVLVVDDCHNMMIFSRG-ELSAPMLHKVQLK 193 (684)
Q Consensus 158 ~~fp~L~~~~v~~Cp~l~~~~~~-~~~~~~l~~~~~~ 193 (684)
..+|+|+.|.+.++ +++.+..+ ...-++|+.+...
T Consensus 132 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 132 ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEee
Confidence 46788888888777 45544433 3334666666554
No 218
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=21.98 E-value=38 Score=33.71 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=15.7
Q ss_pred ccCCccceeeccCcccccccccccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~~ 193 (684)
.+++|++|.+.+|.--...+.....-++|+.....
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 34555566655554222323333333445444443
No 219
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=21.91 E-value=1.3e+02 Score=28.98 Aligned_cols=12 Identities=8% Similarity=-0.072 Sum_probs=6.5
Q ss_pred CCccceeeccCc
Q 035507 161 PSLEVLVVDDCH 172 (684)
Q Consensus 161 p~L~~~~v~~Cp 172 (684)
++|++|.+.++.
T Consensus 224 ~~L~~L~Ls~N~ 235 (310)
T 4glp_A 224 VQPHSLDLSHNS 235 (310)
T ss_dssp CCCSSEECTTSC
T ss_pred CCCCEEECCCCC
Confidence 555555555553
No 220
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=21.81 E-value=1.3e+02 Score=34.30 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=16.6
Q ss_pred ccCCccceeeccCcccccccccccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~~ 193 (684)
.+|+|+.|.+.+|+- ..++.... |.|+.....
T Consensus 804 ~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs 835 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIA 835 (876)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECC
T ss_pred cCCCCCEEECCCCCC-CccCHhhc--CCCCEEECC
Confidence 456666666666654 44444322 355444443
No 221
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=21.17 E-value=1.6e+02 Score=28.48 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=16.9
Q ss_pred ccCCccceeeccCcccccccccccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~~ 193 (684)
.+|+|+.|.+.+|+--.. . ....-|+|+.+...
T Consensus 193 ~l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 193 SLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT 225 (308)
T ss_dssp GCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred CCCCCCEEEccCCccCcc-c-cccCCCCCCEEEcc
Confidence 567777777777643222 1 13334455444443
No 222
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=21.07 E-value=1.1e+02 Score=29.61 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=14.1
Q ss_pred cCCccceeeccCcccccccccccCcccchhhhh
Q 035507 160 FPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQL 192 (684)
Q Consensus 160 fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~ 192 (684)
+|+|++|.+.+|.--..++.....-++|+....
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred cCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 355555555555432233333333344444333
No 223
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=20.91 E-value=89 Score=29.71 Aligned_cols=145 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred ceeeeeccccchhHHHHHhhccccceeeecCCC-chhh-HHHHHHHHhhhCCCCCcEEEecCcccC-CCccccccccccc
Q 035507 38 RDFRIELNTKVCLKDVLIVQLRGIEHLGLEGLQ-EQDV-QNFVNELVKLQGSSQLKHLYISGSRLA-LNPEESERPEKLS 114 (684)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~~~-~~~~-~~~l~~l~~~~~~~~l~~l~~~~~~~~-l~~~~~~~c~~le 114 (684)
..+.+..+....+..-.+..+++|+.|.+..-. .... ...+..+. .|+.|......-. +.+..+..+.+++
T Consensus 59 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG------RLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT------TCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc------CCCEEECCCCcCCEECHhHhhCCcCCC
Q ss_pred c-ccccceeec--ccccccchhhhhhccccccCCccccccccCccccccCCccceeeccCcccccccccccCcccchhhh
Q 035507 115 Y-DIPSNEIIL--EDDISIAKSLFIEKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQ 191 (684)
Q Consensus 115 ~-ii~~~~~~~--~~~~~~~~~~~~l~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~ 191 (684)
+ .+....... ...+.....+ ++|.|.+- ++.++-.+. .-.+|+|+.|.+.+|.--.........-++|+...
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L---~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNL---THLFLHGN-RISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTC---CEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EEECCCCcccccCHhHhccCCCc---cEEECCCC-cccccCHHH-hcCccccCEEECCCCcccccCHhHccCcccccEee
Q ss_pred hc
Q 035507 192 LK 193 (684)
Q Consensus 192 ~~ 193 (684)
..
T Consensus 208 l~ 209 (285)
T 1ozn_A 208 LF 209 (285)
T ss_dssp CC
T ss_pred CC
No 224
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=20.89 E-value=87 Score=30.48 Aligned_cols=35 Identities=6% Similarity=0.149 Sum_probs=23.0
Q ss_pred cccCCccceeeccCcccccccccccCcccchhhhhc
Q 035507 158 IKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLK 193 (684)
Q Consensus 158 ~~fp~L~~~~v~~Cp~l~~~~~~~~~~~~l~~~~~~ 193 (684)
..+|+|++|.+.+| +++.++.....-++|+.+...
T Consensus 211 ~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 211 QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECT
T ss_pred cccCcccEEECcCC-cccchhhHhhcCCCCCEEEcc
Confidence 35677888888777 455455555555677776665
No 225
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=20.69 E-value=6e+02 Score=24.80 Aligned_cols=138 Identities=15% Similarity=0.177 Sum_probs=86.3
Q ss_pred cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHH-Hhc----c---CCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCH
Q 035507 477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA-LLI----H---NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLI 548 (684)
Q Consensus 477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~-lL~----~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l 548 (684)
+++..++.+.......++ .+. +....+|.|+. +|. + ..+++|-.-.+.++..+...-.+.+..+.++ ++
T Consensus 45 vKkeiLkLiet~i~~~~d-~~~-v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~-VF 121 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSND-PQM-VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA-VF 121 (321)
T ss_dssp HHHHHHHHHHHHHTTCSC-HHH-HHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHcCCC-HHH-HHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HH
Confidence 455666666666654432 222 22356777765 331 1 1145666666666666655444555555554 66
Q ss_pred HHHHHHhcc---CCHhHHHHHHHHHHHhhcCC-------CHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507 549 GPLVNLLQN---AEFDIKEEAAWAISNASSRG-------THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK 618 (684)
Q Consensus 549 ~~Li~ll~~---~~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~ 618 (684)
..-++++.. .-|+-|..-...|.++...+ .+++.+. +++.++-..++.++++...++.++..+++
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 666777764 35777777666666665432 3444444 56788889999999999999999999988
Q ss_pred cccc
Q 035507 619 VGEA 622 (684)
Q Consensus 619 ~~~~ 622 (684)
.-.+
T Consensus 197 n~~~ 200 (321)
T 1w9c_A 197 NVAQ 200 (321)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7653
No 226
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=20.45 E-value=3.7e+02 Score=22.84 Aligned_cols=78 Identities=9% Similarity=0.116 Sum_probs=57.6
Q ss_pred hhHHHHHhcCChHHHHHHhccC-----CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHH
Q 035507 494 FQTQCIINHGAVPCLLALLIHN-----HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEA 566 (684)
Q Consensus 494 ~~~~~~i~~g~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a 566 (684)
.....+++.|++..+-..|..- ++..+|.....+|.++-- ....+.+.|+-..++.+-.++ .++.++.|
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvv~~l~k~~~et~~nk~la 127 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI----HKEHLVTSGVGKIVYFYSINPKESKEVRASA 127 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHCHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC----CHHHhhcCCCCcchhhhhcCCccCHHHHHHH
Confidence 3567789999999999999532 166899999999999842 245567777777776666554 67788888
Q ss_pred HHHHHHhhc
Q 035507 567 AWAISNASS 575 (684)
Q Consensus 567 ~~aL~nl~~ 575 (684)
-..+...+.
T Consensus 128 ~~Li~~WsR 136 (145)
T 2xpp_A 128 KALVQKWTN 136 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877766543
No 227
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=20.13 E-value=87 Score=28.58 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=16.1
Q ss_pred ccCCccceeeccCcccccc-cccccCcccchhhhhc
Q 035507 159 KFPSLEVLVVDDCHNMMIF-SRGELSAPMLHKVQLK 193 (684)
Q Consensus 159 ~fp~L~~~~v~~Cp~l~~~-~~~~~~~~~l~~~~~~ 193 (684)
.+++|+.|.+.++. ++.+ ......-++|+.+.+.
T Consensus 127 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 127 GLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred CCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEec
Confidence 34666666666553 3322 2233334455555444
No 228
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=20.09 E-value=88 Score=30.09 Aligned_cols=34 Identities=26% Similarity=0.154 Sum_probs=19.2
Q ss_pred cCCccceeeccCcccccccccccCcc-cchhhhhc
Q 035507 160 FPSLEVLVVDDCHNMMIFSRGELSAP-MLHKVQLK 193 (684)
Q Consensus 160 fp~L~~~~v~~Cp~l~~~~~~~~~~~-~l~~~~~~ 193 (684)
+|+|+.|.+.+|+--.........-| .|+.+...
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 57777777777754433333333333 66666555
No 229
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=20.00 E-value=91 Score=29.42 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=9.3
Q ss_pred HhhccccceeeecCC
Q 035507 55 IVQLRGIEHLGLEGL 69 (684)
Q Consensus 55 ~~~l~~l~~~~~~~~ 69 (684)
+..+++|+.|.+..-
T Consensus 81 ~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 81 FKELKNLETLWVTDN 95 (270)
T ss_dssp TSSCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCC
Confidence 455677777766543
Done!