Query 035508
Match_columns 379
No_of_seqs 147 out of 204
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:32:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2976 Protein involved in au 100.0 1.3E-74 2.9E-79 544.8 15.0 252 47-379 1-258 (278)
2 PF04106 APG5: Autophagy prote 100.0 7.7E-59 1.7E-63 429.5 5.8 174 123-379 1-179 (197)
3 PLN02510 probable 1-acyl-sn-gl 36.6 2.9E+02 0.0063 28.6 10.1 126 36-177 143-286 (374)
4 PF02713 DUF220: Domain of unk 20.2 59 0.0013 26.5 1.3 15 56-70 1-15 (74)
5 PF09331 DUF1985: Domain of un 17.4 84 0.0018 27.9 1.8 16 107-122 9-24 (142)
6 PF07725 LRR_3: Leucine Rich R 15.6 31 0.00068 21.4 -0.9 16 188-203 5-20 (20)
7 PF08891 YfcL: YfcL protein; 13.1 3.5E+02 0.0075 22.6 4.2 34 161-204 48-84 (85)
8 PF02196 RBD: Raf-like Ras-bin 13.1 2.3E+02 0.0049 22.3 3.0 12 298-309 20-31 (71)
9 PF11598 COMP: Cartilage oligo 12.2 2E+02 0.0043 21.3 2.3 19 163-181 18-36 (45)
10 PF08942 DUF1919: Domain of un 12.0 4.6E+02 0.01 25.2 5.3 44 112-175 75-118 (201)
No 1
>KOG2976 consensus Protein involved in autophagy and nutrient starvation [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-74 Score=544.81 Aligned_cols=252 Identities=39% Similarity=0.695 Sum_probs=217.0
Q ss_pred ccHHHHHHHhcCcccEEEEeccCCCCCCCCCCCEEEEecccchhHHHHHHHHHhhcccCCCC-CCceeEEeCCeecccCC
Q 035508 47 MHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG-VDTIWFEYKGLPLKWYT 125 (379)
Q Consensus 47 m~~eirr~vWeG~IPV~I~L~~~e~~~~~~p~p~y~~vPR~SYLpL~lp~I~~~F~~~l~~~-~~~~WFE~egvPLKWh~ 125 (379)
|+.||.|+||||.||+||+|++++- +...+.|+|+++||.|||++++|+|+++|+++++.. ..++||||||+||||||
T Consensus 1 m~~ei~r~vW~G~ip~~itl~~~~~-s~~e~~p~~~~~PR~sYL~l~ip~V~~~fk~~l~~~~lse~WfeynG~PLKW~~ 79 (278)
T KOG2976|consen 1 MDKEIKRLVWNGEIPVQITLDPDKG-SHREPAPLYILVPRESYLALYIPLVKNKFKSFLSFEPLSEIWFEYNGTPLKWYI 79 (278)
T ss_pred CcchHHHHHhCCccceEEEEccCCC-CCCCCcchhhccchHHHHHHHHHHHHHHhhhccCCCchhHHhhhcCCcceeeec
Confidence 6679999999999999999999553 344688999999999999999999999999998643 45799999999999999
Q ss_pred CceeeeeecCCCC-CCCeEEEEEecCCCCcccccCCChhHHHHHHHHHHhhhhhhhcCcchhhhccCHHHHHHHHHHHHc
Q 035508 126 PTGVLFDLLCAEP-ERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMN 204 (379)
Q Consensus 126 PiGVLyDll~~~~-~lPW~LtvHf~~~P~~~Ll~~~~~e~vk~~FmnsLKEAdfIrnGssK~VMsLsk~D~~qLW~sV~~ 204 (379)
|||||||++|+.+ ..||+|||||+.||++.|++|++++++|++|||||||||||+||+||.||+|||+|+++||.||+|
T Consensus 80 PvGvLFDlL~~~~~~~~w~i~v~~~~~P~~~i~~~~s~D~~e~~F~~~lKEadyi~ng~sk~i~~msk~e~~~lW~sv~N 159 (278)
T KOG2976|consen 80 PVGVLFDLLAGSSATFLWNITVRFDSFPPTIILQMESKDQAEAFFFNCLKEADYIKNGSSKAIMNMSKNEARQLWGSVIN 159 (278)
T ss_pred cHHHHHHHHhcCCcCcceEEEEecCCCCCceecccCCHHHHHHHHHHHHHHHHHHHcCchHHHHHHhHHHHHHHHHHHhc
Confidence 9999999999876 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhcccccccccccccccCCCCCccCCCCCccCCCCcccccceeEEEec--cCCCCCCCCCCCCCCCCcccc
Q 035508 205 GNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVW--SVSEDFDDLEDAPDIDCWDKI 282 (379)
Q Consensus 205 ~dfd~F~~In~KL~~~~~~~~~~~~~~s~~~~~~~s~~~~~~~~~k~r~IPvRIYlp--~~~~~~~~~~d~~~~~~~~~~ 282 (379)
+|||+||+|++|||++ .| .+++|+||+|||+. ...++
T Consensus 160 ~~fd~F~~Is~Kl~~s-~e------------------------~n~~r~IPL~iy~sq~~t~r~---------------- 198 (278)
T KOG2976|consen 160 RNFDDFWEISNKLMES-VE------------------------DNRSRHIPLRIYTSQVKTARD---------------- 198 (278)
T ss_pred ccHHHHHHHHHHHHhh-cc------------------------ccccccceeEeeccccccccc----------------
Confidence 9999999999999985 22 25689999999953 12222
Q ss_pred ceeeeceee--ecCCCccccHHHHHHHhcCCcCCCCCCCCCCCCcchhhhhccCccccCCCCchhhHHHHHhhhccccce
Q 035508 283 SFINRPVEV--RTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEHVTRNAEI 360 (379)
Q Consensus 283 ~~iQ~pv~p--~~~dG~~~TLgdaL~~lLP~lFps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (379)
|.+....| ...||...|||++|++.+|+.++++..... .
T Consensus 199 -f~~~~~~P~~~~~d~~~stlge~l~d~~~~s~~s~d~~~~--------------------------------------~ 239 (278)
T KOG2976|consen 199 -FRTSLTFPCISQPDGSLSTLGEFLKDRLPDSLDSKDDING--------------------------------------N 239 (278)
T ss_pred -hhhccccceeecCchhhhhhhHHHHhhcccccCccccccc--------------------------------------c
Confidence 23333333 235899999999999999999865522000 1
Q ss_pred eeEEEeecccCCCCCCCCC
Q 035508 361 KLVRIQGIEPKLEIPFSWV 379 (379)
Q Consensus 361 ~~v~~qGIe~~l~tPl~W~ 379 (379)
.-|+|||||+|++|||+||
T Consensus 240 ~~viihGIei~l~tpL~~l 258 (278)
T KOG2976|consen 240 DPVIIHGIEIPLHTPLYWL 258 (278)
T ss_pred CceEEecccccccchHHHH
Confidence 1299999999999999996
No 2
>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.
Probab=100.00 E-value=7.7e-59 Score=429.53 Aligned_cols=174 Identities=40% Similarity=0.742 Sum_probs=127.1
Q ss_pred cCCCceeeeeecCCCCCC-----CeEEEEEecCCCCcccccCCChhHHHHHHHHHHhhhhhhhcCcchhhhccCHHHHHH
Q 035508 123 WYTPTGVLFDLLCAEPER-----PWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVE 197 (379)
Q Consensus 123 Wh~PiGVLyDll~~~~~l-----PW~LtvHf~~~P~~~Ll~~~~~e~vk~~FmnsLKEAdfIrnGssK~VMsLsk~D~~q 197 (379)
||||||||||++++.... ||+|||||++||++.++||++++++|++|||+|||||||||||+|+||+||++|+++
T Consensus 1 Wh~PiGvLyDl~~~~~~~~~~~~pW~ltlhf~~~P~~~li~~~~~~~~~~~fmn~lKEA~fi~~Gssk~im~Ls~~d~~~ 80 (197)
T PF04106_consen 1 WHYPIGVLYDLLTGSDPLSPSLLPWKLTLHFSDYPPDQLIPCESEESIEDHFMNQLKEADFIRNGSSKVIMSLSKKDQKQ 80 (197)
T ss_dssp SSS-HHHHHHHHHGGG---SS--EEEEEEEEESS--TTS----SSTHHHHHHHHHHHHHHHHHHSSSHHHHTS-HHHHHH
T ss_pred CCCCceeeeeeccCCCcCcCCCCcEEEEEEeCCCChhheecCCCHHHHHHHHHHHHHHHHHHHhCCHHHHhhcCHHHHHH
Confidence 999999999999976554 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHhcccccccccccccccCCCCCccCCCCCccCCCCcccccceeEEEeccCCCCCCCCCCCCCCC
Q 035508 198 LWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDID 277 (379)
Q Consensus 198 LW~sV~~~dfd~F~~In~KL~~~~~~~~~~~~~~s~~~~~~~s~~~~~~~~~k~r~IPvRIYlp~~~~~~~~~~d~~~~~ 277 (379)
||+||++|||++||+||+||++.. +.++|+||||||+++.
T Consensus 81 LW~si~~~~~~~f~~i~~kl~~~~--------------------------~~~~r~IPiRiy~~~~-------------- 120 (197)
T PF04106_consen 81 LWQSIVNHDFDQFWSINSKLMPPD--------------------------PSKFRHIPIRIYLPGS-------------- 120 (197)
T ss_dssp HHHHHHHT-HHHHHHHHHHHS------------------------------SS-SB--EEEEE-SS--------------
T ss_pred HHHHHHHhCHHHHHHHHHHHHhhc--------------------------CCCcceeEEEEEeCCC--------------
Confidence 999999999999999999999421 2458999999999743
Q ss_pred CccccceeeeceeeecCCCccccHHHHHHHhcCCcCCCCCCCCCCCCcchhhhhccCccccCCCCchhhHHHHHhhhccc
Q 035508 278 CWDKISFINRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEHVTRN 357 (379)
Q Consensus 278 ~~~~~~~iQ~pv~p~~~dG~~~TLgdaL~~lLP~lFps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (379)
.+++|++|+|.+++|+..||||+|+.+||++|++.... .
T Consensus 121 ----~~~iQ~~i~~~~~~g~~~TL~d~L~~~lp~~f~s~~~~------------------------~------------- 159 (197)
T PF04106_consen 121 ----VPVIQPPIPPIKEDGQPQTLGDALSELLPELFPSSDEP------------------------E------------- 159 (197)
T ss_dssp ------EE----B----TT---BTGGGHHHHHTTT--T------------------------------------------
T ss_pred ----cceEecccccccCCCCcCcHHHHHHHhChhhcccccCc------------------------c-------------
Confidence 26899999999999999999999999999999654220 1
Q ss_pred cceeeEEEeecccCCCCCCCCC
Q 035508 358 AEIKLVRIQGIEPKLEIPFSWV 379 (379)
Q Consensus 358 ~~~~~v~~qGIe~~l~tPl~W~ 379 (379)
...|+||||++|+||||+||
T Consensus 160 --~~~~iihGI~ipldtpl~~l 179 (197)
T PF04106_consen 160 --LARVIIHGIEIPLDTPLQWL 179 (197)
T ss_dssp ---EEEEETTEEE-TTSBHHHH
T ss_pred --ccEEEEeCeeCCCCCcHHHH
Confidence 22799999999999999996
No 3
>PLN02510 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=36.60 E-value=2.9e+02 Score=28.63 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=80.4
Q ss_pred CCcccCCCCCcccH----HHHHHHhcCcccEEEEeccCCCCCCCC--------------CCCEEEEecccchhHHHHHHH
Q 035508 36 RDRISLNRNRNMHM----EARKYVWEGAIPLQIHLHESEVTTLPP--------------PPPALILAPRIGYLPLLVGLI 97 (379)
Q Consensus 36 ~~~~~~~~~~~m~~----eirr~vWeG~IPV~I~L~~~e~~~~~~--------------p~p~y~~vPR~SYLpL~lp~I 97 (379)
-|.||+.|+..-|. ...+.+=++.-|..+.+-++.-...+. |..-+++.||..-+...+..+
T Consensus 143 ~g~I~v~R~~~~D~~~l~~~l~~lk~~~~~~~LvIFPEGTR~t~~~~~~s~~~A~k~glPil~~vL~PRt~Gf~~~l~~L 222 (374)
T PLN02510 143 FEFIPVERKWEVDEPNIRQMLSSFKDPRDPLWLALFPEGTDYTEAKCQRSQKFAAEHGLPILNNVLLPKTKGFVSCLQEL 222 (374)
T ss_pred cCCeeeeCCccccHHHHHHHHHHHhccCCCcEEEEeCCcCCCCccccchHHHHHHHcCCCcceeEEcCccccHHHHHHHH
Confidence 46788877654432 334455557778888888877543211 334567889999999999888
Q ss_pred HHhhcccCCCCCCceeEEeCCeecccCCCceeeeeecCCCCCCCeEEEEEecCCCCcccccCCChhHHHHHHHHHHhhhh
Q 035508 98 KPYFGSSLPPGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAA 177 (379)
Q Consensus 98 ~~~F~~~l~~~~~~~WFE~egvPLKWh~PiGVLyDll~~~~~lPW~LtvHf~~~P~~~Ll~~~~~e~vk~~FmnsLKEAd 177 (379)
.+.+... -++-.-|.+.. | -+.|++++. .|=++.+|.+-+|-+.++ .+++.+++-..+.+.|=|
T Consensus 223 ~~~l~~I-----yDvTi~Y~~~~-----P--s~~~~~~g~--~p~~vhihvrr~pi~~iP--~~~~~~~~WL~~~w~eKD 286 (374)
T PLN02510 223 RCSLDAV-----YDVTIGYKHRC-----P--SFLDNVFGI--DPSEVHIHIRRIPLKQIP--TSEDEVSAWLMDRFQLKD 286 (374)
T ss_pred HHHHHhh-----eeEEEEeCCCC-----C--CHHHHhcCC--CCcEEEEEEEEEECcccc--CcHHHHHHHHHHHHHHHH
Confidence 7766542 24455565531 3 244655442 366899999999887764 456677666666666544
No 4
>PF02713 DUF220: Domain of unknown function DUF220; InterPro: IPR003863 This entry consists of several Arabidopsis thaliana hypothetical proteins, none of which have any known function. They contain a conserved region with two cysteine residues.
Probab=20.20 E-value=59 Score=26.49 Aligned_cols=15 Identities=33% Similarity=0.997 Sum_probs=13.0
Q ss_pred hcCcccEEEEeccCC
Q 035508 56 WEGAIPLQIHLHESE 70 (379)
Q Consensus 56 WeG~IPV~I~L~~~e 70 (379)
|.|+|||++.++++.
T Consensus 1 WSG~ipi~livdEnr 15 (74)
T PF02713_consen 1 WSGTIPIHLIVDENR 15 (74)
T ss_pred CcceeeEEEEEcccc
Confidence 899999999988754
No 5
>PF09331 DUF1985: Domain of unknown function (DUF1985); InterPro: IPR015410 This domain is functionally uncharacterised; it is found in a set of Arabidopsis thaliana (Mouse-ear cress) hypothetical proteins.
Probab=17.42 E-value=84 Score=27.85 Aligned_cols=16 Identities=31% Similarity=0.926 Sum_probs=13.9
Q ss_pred CCCCceeEEeCCeecc
Q 035508 107 PGVDTIWFEYKGLPLK 122 (379)
Q Consensus 107 ~~~~~~WFE~egvPLK 122 (379)
.+.+++||-++|+|++
T Consensus 9 ~k~~e~W~~~~g~piR 24 (142)
T PF09331_consen 9 EKKYEIWFVFNGVPIR 24 (142)
T ss_pred cCCceEEEEECCEeeE
Confidence 3457899999999999
No 6
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=15.58 E-value=31 Score=21.40 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=12.3
Q ss_pred hccCHHHHHHHHHHHH
Q 035508 188 MNMSQSDQVELWRSVM 203 (379)
Q Consensus 188 MsLsk~D~~qLW~sV~ 203 (379)
.+|.-..-++||+|++
T Consensus 5 L~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 5 LNMPYSKLEKLWEGVK 20 (20)
T ss_pred EECCCCChHHhcCccC
Confidence 4677778899999874
No 7
>PF08891 YfcL: YfcL protein; InterPro: IPR014987 This group of proteins are functionally uncharacterised. They are related to the short YfcL protein from Escherichia coli.
Probab=13.10 E-value=3.5e+02 Score=22.59 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=27.3
Q ss_pred ChhHHHHHHHHHHhhhhhhhcCcchhhhccCHHHH---HHHHHHHHc
Q 035508 161 GEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQ---VELWRSVMN 204 (379)
Q Consensus 161 ~~e~vk~~FmnsLKEAdfIrnGssK~VMsLsk~D~---~qLW~sV~~ 204 (379)
+.++++..+.++|+.| + | .|+..|+ ..||..+..
T Consensus 48 ~~~~l~~~v~~sL~~A---~-~------ELsp~Dq~lV~~lW~~L~~ 84 (85)
T PF08891_consen 48 SLEALKARVEASLEKA---A-G------ELSPADQALVNNLWQQLQQ 84 (85)
T ss_pred CHHHHHHHHHHHHHHH---H-c------cCCHHHHHHHHHHHHHHHh
Confidence 3477899999999999 3 3 6999998 678988754
No 8
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=13.05 E-value=2.3e+02 Score=22.29 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=10.1
Q ss_pred cccHHHHHHHhc
Q 035508 298 CFTLRDAIKTLL 309 (379)
Q Consensus 298 ~~TLgdaL~~lL 309 (379)
-.|+.|+|..++
T Consensus 20 g~ti~d~L~~~~ 31 (71)
T PF02196_consen 20 GMTIRDALSKAC 31 (71)
T ss_dssp TSBHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 459999999886
No 9
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=12.22 E-value=2e+02 Score=21.34 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhhhhhhhc
Q 035508 163 DSVKWSFINSLKEAAYIIN 181 (379)
Q Consensus 163 e~vk~~FmnsLKEAdfIrn 181 (379)
..+|.-.-+|+||.-|+||
T Consensus 18 ~elk~~l~~Q~kE~~~LRn 36 (45)
T PF11598_consen 18 QELKELLRQQIKETRFLRN 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999997
No 10
>PF08942 DUF1919: Domain of unknown function (DUF1919); InterPro: IPR015037 This protein has no known function. It is found in various hypothetical and putative bacterial proteins. ; PDB: 2G6T_B.
Probab=12.04 E-value=4.6e+02 Score=25.16 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=25.7
Q ss_pred eeEEeCCeecccCCCceeeeeecCCCCCCCeEEEEEecCCCCcccccCCChhHHHHHHHHHHhh
Q 035508 112 IWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKE 175 (379)
Q Consensus 112 ~WFE~egvPLKWh~PiGVLyDll~~~~~lPW~LtvHf~~~P~~~Ll~~~~~e~vk~~FmnsLKE 175 (379)
+=|.-+..+.+ .||||.|= .|++||-.|. +.+..+.-|--..|-
T Consensus 75 l~~~~~~~~~~-~YPvG~L~-----------dIeihF~HY~--------s~~eA~~KW~~R~kR 118 (201)
T PF08942_consen 75 LEFIDESKSYD-DYPVGLLG-----------DIEIHFMHYK--------SFEEAKEKWNRRKKR 118 (201)
T ss_dssp -EECE--BGGG-B--EEEEC------------EEEEESS-S--------SHHHHHHHHHHHHCC
T ss_pred eEEeecCcccC-CcceEeEC-----------CEEEEEEecC--------CHHHHHHHHHHHHhc
Confidence 44555555577 99999992 5889996664 466777777666654
Done!