Query 035508
Match_columns 379
No_of_seqs 147 out of 204
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gdk_B Autophagy protein 5; pr 100.0 1.2E-84 4E-89 627.2 19.4 251 47-379 3-254 (275)
2 3vqi_A ATG5; autophagy, E3-lik 100.0 2.2E-80 7.6E-85 597.2 17.3 238 45-379 2-258 (274)
3 2dyo_A Autophagy protein 5; ub 100.0 7.1E-78 2.4E-82 585.5 15.4 241 48-379 4-269 (297)
4 2r2q_A Gamma-aminobutyric acid 41.0 32 0.0011 28.2 4.6 30 203-261 6-35 (110)
5 1yyp_B DNA polymerase, POL; pr 24.5 22 0.00074 22.6 0.6 8 254-261 1-8 (26)
6 2g6t_A Uncharacterized protein 14.9 1.6E+02 0.0055 28.6 4.6 66 88-176 145-210 (306)
7 2fjl_A 1-phosphatidylinositol- 10.0 4.3E+02 0.015 22.9 5.5 53 124-178 87-148 (150)
8 3pnu_A Dihydroorotase; TIM bar 7.4 1.9E+02 0.0066 27.9 2.3 18 191-208 238-255 (359)
9 1c1y_B Proto-onkogene serine/t 6.8 3.1E+02 0.011 21.4 2.8 12 298-309 21-32 (77)
10 3ny5_A Serine/threonine-protei 6.6 3.2E+02 0.011 22.3 2.8 12 298-309 33-44 (96)
No 1
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=100.00 E-value=1.2e-84 Score=627.21 Aligned_cols=251 Identities=31% Similarity=0.612 Sum_probs=225.9
Q ss_pred ccHHHHHHHhcCcccEEEEeccCCCCCCCCCCCEEEEecccchhHHHHHHHHHhhcccCCC-CCCceeEEeCCeecccCC
Q 035508 47 MHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPP-GVDTIWFEYKGLPLKWYT 125 (379)
Q Consensus 47 m~~eirr~vWeG~IPV~I~L~~~e~~~~~~p~p~y~~vPR~SYLpL~lp~I~~~F~~~l~~-~~~~~WFE~egvPLKWh~ 125 (379)
||.||+|+||+|+|||||+|+++|++.. ++.|||+++||+||||+++|+|++||.+++.. ..+++||||||+||||||
T Consensus 3 ~d~ei~r~vW~G~Ipv~i~l~~~e~~~~-~~~p~~~~vPR~sYLpl~~p~i~~~F~~~~~~~~~~~~Wfe~eg~PLkWh~ 81 (275)
T 4gdk_B 3 DDKDVLRDVWFGRIPTCFTLYQDEITER-EAEPYYLLLPRVSYLTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWHY 81 (275)
T ss_dssp CHHHHHHHHHTCEEEEEEEECTTSCCSS-CCCCEEEEEETTSCHHHHCHHHHHHHHTTSCGGGCCCCEEEETTEECCTTS
T ss_pred chHHHHHHHhCCCceEEEEECccccccC-CCCcEEEEcchhhHHHHHHHHHHHHHHhhccccccCCccEeECCEEecccc
Confidence 4679999999999999999999999765 47899999999999999999999999998864 467999999999999999
Q ss_pred CceeeeeecCCCCCCCeEEEEEecCCCCcccccCCChhHHHHHHHHHHhhhhhhhcCcchhhhccCHHHHHHHHHHHHcC
Q 035508 126 PTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNG 205 (379)
Q Consensus 126 PiGVLyDll~~~~~lPW~LtvHf~~~P~~~Ll~~~~~e~vk~~FmnsLKEAdfIrnGssK~VMsLsk~D~~qLW~sV~~~ 205 (379)
|||||||+|++++.+||+|||||++||++.|++|++++++|++||||||||||||||+ |+||+|||+||++||+||++|
T Consensus 82 PiGvLyDl~~~~~~lPW~Ltvhf~~~P~~~l~~~~~~~~i~~~fmn~lKEAd~ir~~s-k~im~lsk~d~~~LW~sv~~~ 160 (275)
T 4gdk_B 82 PIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCMKEADALKHKS-QVINEMQKKDHKQLWMGLQND 160 (275)
T ss_dssp CHHHHHHHHHTTSCSSEEEEEECSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTT-TTTTSSCHHHHHHHHHHHHTT
T ss_pred ccEEEEEecCCCCCCCeEEEEEcCCCCccccccCCcHHHHHHHHHHHHHHHHHHhcCC-HHhhhcCHHHHHHHHHHHHcC
Confidence 9999999999988999999999999999999999999999999999999999999986 999999999999999999999
Q ss_pred ChHHHHHHHhcccccccccccccccCCCCCccCCCCCccCCCCcccccceeEEEeccCCCCCCCCCCCCCCCCcccccee
Q 035508 206 NLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFI 285 (379)
Q Consensus 206 dfd~F~~In~KL~~~~~~~~~~~~~~s~~~~~~~s~~~~~~~~~k~r~IPvRIYlp~~~~~~~~~~d~~~~~~~~~~~~i 285 (379)
||++||+||+|||+.+. .+..+|+||||||++..++ .++
T Consensus 161 d~~~F~~in~kL~~~~~------------------------~~~~~r~IPvRiY~~~~~~-----------------~~i 199 (275)
T 4gdk_B 161 RFDQFWAINRKLMEYPA------------------------EENGFRYIPFRIYQTTTER-----------------PFI 199 (275)
T ss_dssp CHHHHHHHHTGGGCCCT------------------------TSSSCSSCCEEEECTTSSS-----------------SEE
T ss_pred CHHHHHHHHHhhcCCCC------------------------ccCccccceEEEEecCCCC-----------------Ccc
Confidence 99999999999998531 1234799999999975431 489
Q ss_pred eeceeeecCCCccccHHHHHHHhcCCcCCCCCCCCCCCCcchhhhhccCccccCCCCchhhHHHHHhhhccccceeeEEE
Q 035508 286 NRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEHVTRNAEIKLVRI 365 (379)
Q Consensus 286 Q~pv~p~~~dG~~~TLgdaL~~lLP~lFps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 365 (379)
|++|+|..++|+++||||||+++||++|++++... ..+|++
T Consensus 200 Q~~v~p~~~~g~~~TLg~~L~~~lP~lf~~~~~~~---------------------------------------~~~vii 240 (275)
T 4gdk_B 200 QKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEK---------------------------------------KNQVMI 240 (275)
T ss_dssp CCCCCSBCTTSCBCBHHHHHHHHCGGGCC---------------------------------------------CEEEEB
T ss_pred ccCcCCcCCCCCcccHHHHHHHhcccccCCCcccc---------------------------------------cceEEE
Confidence 99999999999999999999999999998652211 237999
Q ss_pred eecccCCCCCCCCC
Q 035508 366 QGIEPKLEIPFSWV 379 (379)
Q Consensus 366 qGIe~~l~tPl~W~ 379 (379)
|||++|+||||+||
T Consensus 241 hGI~~pl~~pl~~l 254 (275)
T 4gdk_B 241 HGIEPMLETPLQWL 254 (275)
T ss_dssp TTBCCCTTSBHHHH
T ss_pred eCCcCCCCCCHHHH
Confidence 99999999999996
No 2
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=100.00 E-value=2.2e-80 Score=597.23 Aligned_cols=238 Identities=26% Similarity=0.466 Sum_probs=210.4
Q ss_pred CcccHHHHHHHhcCcccEEEEeccCCCCCC--CCCCCEEEEecccchhHHHHHHHHHhhcccCCCC----CCceeEEeCC
Q 035508 45 RNMHMEARKYVWEGAIPLQIHLHESEVTTL--PPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG----VDTIWFEYKG 118 (379)
Q Consensus 45 ~~m~~eirr~vWeG~IPV~I~L~~~e~~~~--~~p~p~y~~vPR~SYLpL~lp~I~~~F~~~l~~~----~~~~WFE~eg 118 (379)
|||+ |+||+||+|+|||||+|+++|++.. .++.|||+++||+||||+++|+|++||++++... .+++||||||
T Consensus 2 ~~~~-ei~~~vW~G~Ipv~i~l~~~e~~~~~~~~~~p~~~~vPR~SYLpl~~p~i~~~F~~~~~~~~~~~~~~~WFe~eg 80 (274)
T 3vqi_A 2 PHME-ELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWWFEYNG 80 (274)
T ss_dssp --CC-HHHHHHHTCEEEEEEEECTTTBCSSCCTGGGEEEEEEETTSCHHHHHHHHHHHHGGGBCSCCSCSSTTEEEEETT
T ss_pred CcHH-HHHHHHhCCCceEEEEEChHHhcccCCCCCCcEEEEcchHhHHHHHHHHHHHHHHhhcccccccccCcccEEECC
Confidence 6776 9999999999999999999999765 4689999999999999999999999999987643 4699999999
Q ss_pred eecccCCCceeeeeecCCCC-----------CCCeEEEEEecC-CCCccccc-CCChhHHHHHHHHHHhhhhhhhcCcch
Q 035508 119 LPLKWYTPTGVLFDLLCAEP-----------ERPWNLTVHFRG-YPVHVLIP-CEGEDSVKWSFINSLKEAAYIINGNCK 185 (379)
Q Consensus 119 vPLKWh~PiGVLyDll~~~~-----------~lPW~LtvHf~~-~P~~~Ll~-~~~~e~vk~~FmnsLKEAdfIrnGssK 185 (379)
+|||||||||||||+|++.. .+||+|||||++ ||++ ++| |++++++|++|||||||||||||||+|
T Consensus 81 ~PLkWh~PiGvLyDl~~~~~~~~~~~~~~~~~lpW~Ltvh~~~~~P~~-li~~~~~~~~i~~~fmn~lKEAdfir~Gsak 159 (274)
T 3vqi_A 81 EGVPWEYPCGVLFDLLNKKRKKQGNELDDTSLQMWELQLCHGDKYPRG-ILPLVDGHSQIKDYWRHQWKQACFILNGSAK 159 (274)
T ss_dssp EECCTTSCHHHHHHHHCC--------------CEEEEEEEECSSCCTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHSBSC
T ss_pred EeccccccceEEEEeccCCCcccccccccCCCCCEEEEEEeCCCCCcc-ccccCCcHHHHHHHHHHHHHHHHHHHhCChH
Confidence 99999999999999998754 579999999998 9999 777 799999999999999999999999999
Q ss_pred hhhccCHHHHHHHHHHHHcCChHHHHHHHhcccccccccccccccCCCCCccCCCCCccCCCCcccccceeEEEeccCCC
Q 035508 186 NVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSE 265 (379)
Q Consensus 186 ~VMsLsk~D~~qLW~sV~~~dfd~F~~In~KL~~~~~~~~~~~~~~s~~~~~~~s~~~~~~~~~k~r~IPvRIYlp~~~~ 265 (379)
+||+||++|+++||+||++|||++||+||+|||++ .++|+||||||++..
T Consensus 160 ~im~lsk~d~~~LW~sv~~~~~~~F~~i~~kL~~~----------------------------~~~r~IPiRIy~~~~-- 209 (274)
T 3vqi_A 160 RIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSM----------------------------NKAKSLPVRVWTSNY-- 209 (274)
T ss_dssp TTTTSCHHHHHHHHHHHHHTCHHHHHHHHHTTCCG----------------------------GGCSBCCEEEECTTS--
T ss_pred HhhccCHHHHHHHHHHHHHhcHHHHHHHHHHhcCC----------------------------CcccceeEEEEcCCC--
Confidence 99999999999999999999999999999999952 137999999999632
Q ss_pred CCCCCCCCCCCCCccccceeeeceeeecCCCccccHHHHHHHhcCCcCCCCCCCCCCCCcchhhhhccCccccCCCCchh
Q 035508 266 DFDDLEDAPDIDCWDKISFINRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTE 345 (379)
Q Consensus 266 ~~~~~~d~~~~~~~~~~~~iQ~pv~p~~~dG~~~TLgdaL~~lLP~lFps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (379)
+++|.+|++.+ +.+||||+|+++||.+|. .
T Consensus 210 -----------------~~iQ~~i~~~~---~~~TLg~~L~~~lp~l~~------~------------------------ 239 (274)
T 3vqi_A 210 -----------------AVLQPTVPVTD---KELSVAELLDSIKLSSDG------V------------------------ 239 (274)
T ss_dssp -----------------CEECCCCBCC------CBHHHHHHTTTCCC--------C------------------------
T ss_pred -----------------CeEecccCCCC---ccccHHHHHHHhcccccc------c------------------------
Confidence 58999999853 889999999999998871 1
Q ss_pred hHHHHHhhhccccceeeEEEeecccCCCCCCCCC
Q 035508 346 VEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV 379 (379)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~qGIe~~l~tPl~W~ 379 (379)
..|++|||++|++||++||
T Consensus 240 ---------------~~~iihGi~vp~~~pl~~l 258 (274)
T 3vqi_A 240 ---------------KSVIIQGIDVSIEDNIFEL 258 (274)
T ss_dssp ---------------CEEEETTEEEETTSBHHHH
T ss_pred ---------------eEEEEeCccCCCCCcHHHH
Confidence 1699999999999999996
No 3
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=100.00 E-value=7.1e-78 Score=585.49 Aligned_cols=241 Identities=22% Similarity=0.361 Sum_probs=207.2
Q ss_pred cHHHHHHHhcCcccEEEEeccCCCCCCCCCCC---EEEEecccchhHHHHHHHHHhhcccCCCC-----CCceeEEeCCe
Q 035508 48 HMEARKYVWEGAIPLQIHLHESEVTTLPPPPP---ALILAPRIGYLPLLVGLIKPYFGSSLPPG-----VDTIWFEYKGL 119 (379)
Q Consensus 48 ~~eirr~vWeG~IPV~I~L~~~e~~~~~~p~p---~y~~vPR~SYLpL~lp~I~~~F~~~l~~~-----~~~~WFE~egv 119 (379)
+.||||+||+|+|||||+|++++++ ..+|.| ||+++||+||||+++|+|++||++++... ...+||||||+
T Consensus 4 ~~~i~r~vW~G~IPv~i~L~~~~~~-~~~p~p~~~~~~~vPR~SYLpl~~p~v~~~F~~~l~~~~~~~~~~~~WFe~eg~ 82 (297)
T 2dyo_A 4 MNDIKQLLWNGELNVLVSIDPSFLM-KGSPREIAVLRIRVPRETYLVNYMPLIWNKIKSFLSFDPLTDSEKYFWFEHNKT 82 (297)
T ss_dssp HHHHHHHHHTCEEEEEEEECGGGBC-TTCCGGGGEEEEEEESSSCGGGGHHHHHHHHGGGBSSCC----CCEEEEEETTE
T ss_pred HHHHHHHHHCCCceEEEEECccccc-CCCCCCcceEEEEcchHhHHHHHHHHHHHHHHhhccccccccccCccceeECCE
Confidence 4699999999999999999976665 457888 99999999999999999999999987421 23579999999
Q ss_pred ecccCCCceeeeeecCC-CC------------C-CCeEEEEEecCCCCcccccC-CChhHHHHHHHHHHhhhhhhhcCcc
Q 035508 120 PLKWYTPTGVLFDLLCA-EP------------E-RPWNLTVHFRGYPVHVLIPC-EGEDSVKWSFINSLKEAAYIINGNC 184 (379)
Q Consensus 120 PLKWh~PiGVLyDll~~-~~------------~-lPW~LtvHf~~~P~~~Ll~~-~~~e~vk~~FmnsLKEAdfIrnGss 184 (379)
|||||||||||||+|++ ++ . +||+|||||++||++.|+|| +++++||++|||+||||||||||++
T Consensus 83 PLkWh~PiGvLyDl~~~~~p~~~~~~~~~~~~~~lPW~Ltvhf~~~P~~~li~~~~~~~~i~~~f~n~lKEAdfir~G~~ 162 (297)
T 2dyo_A 83 PIPWNYPVGVLFDCLAGKSATFTTSFENQVKDVLTFLRIHLVMGDSLPPTIIPIASSKTQAEKFWFHQWKQVCFILNGSS 162 (297)
T ss_dssp EECTTSCHHHHHHHHHGGGC---------CCCCCCEEEEEEEEESSCCTTCCCCCSCTTHHHHHHHHHHHHHHHHHHSSS
T ss_pred EccccccceEEEEeccCCCcccccccccccccCCCCEEEEEEeCCCCccceeecCChHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999985 22 2 69999999999999999999 8999999999999999999999999
Q ss_pred hhhhccCHHHHHHHHHHHHcCChHHHHHHHhcccccccccccccccCCCCCccCCCCCccCCCCcccccceeEEEeccCC
Q 035508 185 KNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVS 264 (379)
Q Consensus 185 K~VMsLsk~D~~qLW~sV~~~dfd~F~~In~KL~~~~~~~~~~~~~~s~~~~~~~s~~~~~~~~~k~r~IPvRIYlp~~~ 264 (379)
|+||+|||+|+++||+||++|||++||+||+|||+.+ +|+||||||++...
T Consensus 163 k~im~Lsk~d~~~LW~~v~~~d~~~F~~i~~kL~~~~-----------------------------~r~IPvRIy~~~~~ 213 (297)
T 2dyo_A 163 KAIMSLSVNEARKFWGSVITRNFQDFIEISNKISSSR-----------------------------PRHIPLIIQTSRTS 213 (297)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTCHHHHHHHHHHHCCSC-----------------------------CSBCCEEEECCSSS
T ss_pred HHhhhcCHHHHHHHHHHHHhhhHHHHHHHHHhccCCC-----------------------------cceeeEEEEecCCC
Confidence 9999999999999999999999999999999999742 69999999997532
Q ss_pred CCCCCCCCCCCCCCccccceeeeceeeecCCCccccHHHHH--HHhcCCcCCCCCCCCCCCCcchhhhhccCccccCCCC
Q 035508 265 EDFDDLEDAPDIDCWDKISFINRPVEVRTEEGKCFTLRDAI--KTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNK 342 (379)
Q Consensus 265 ~~~~~~~d~~~~~~~~~~~~iQ~pv~p~~~dG~~~TLgdaL--~~lLP~lFps~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (379)
+ ..+++|..+++ .++.+|||||| +.+||++|++++.
T Consensus 214 ~---------------~~~~iqp~~~~---~~~~~TLgd~L~~~~~lp~lf~~~~~------------------------ 251 (297)
T 2dyo_A 214 G---------------TFRISQPTISM---TGVNPTLKDIEGDILDVKEGINGNDV------------------------ 251 (297)
T ss_dssp S---------------SCCEECCCCBC---TTCCCBTGGGHHHHSCTTTC----CE------------------------
T ss_pred C---------------ceeeeecccCC---CCCCcCHHHHHhhhhhccccCCCCCC------------------------
Confidence 1 12467744432 33455999999 9999999976411
Q ss_pred chhhHHHHHhhhccccceeeEEEeecccCCCCCCCCC
Q 035508 343 NTEVEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV 379 (379)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~v~~qGIe~~l~tPl~W~ 379 (379)
.|+||||++||+|||+||
T Consensus 252 -------------------~viihGI~vpl~~pl~wl 269 (297)
T 2dyo_A 252 -------------------MVICQGIEIPWHMLLYDL 269 (297)
T ss_dssp -------------------EEEETTEEECTTCBHHHH
T ss_pred -------------------eEEEeCccCCCCCcHHHH
Confidence 599999999999999996
No 4
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=40.96 E-value=32 Score=28.22 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=24.0
Q ss_pred HcCChHHHHHHHhcccccccccccccccCCCCCccCCCCCccCCCCcccccceeEEEec
Q 035508 203 MNGNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVW 261 (379)
Q Consensus 203 ~~~dfd~F~~In~KL~~~~~~~~~~~~~~s~~~~~~~s~~~~~~~~~k~r~IPvRIYlp 261 (379)
..+.|+++...+.+|... .+.+|||+|...
T Consensus 6 ~~~~~e~R~~e~~~ir~k-----------------------------~p~~IPVive~~ 35 (110)
T 2r2q_A 6 EDHPFEYRKKEGEKIRKK-----------------------------YPDRVPVIVEKA 35 (110)
T ss_dssp HHSCHHHHHHHHHHHHHH-----------------------------CTTEEEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHh-----------------------------CCCceEEEEEec
Confidence 357899999999999753 247899999974
No 5
>1yyp_B DNA polymerase, POL; processivity fold (SAME fold AS HSV UL42, PCNA, and homotrim sliding clamps), replication-transferase complex; HET: DNA; 2.50A {Human herpesvirus 5}
Probab=24.51 E-value=22 Score=22.64 Aligned_cols=8 Identities=38% Similarity=0.518 Sum_probs=7.0
Q ss_pred ceeEEEec
Q 035508 254 IPVRLYVW 261 (379)
Q Consensus 254 IPvRIYlp 261 (379)
+|.|||++
T Consensus 1 lP~RiYl~ 8 (26)
T 1yyp_B 1 LPRRLHLE 8 (26)
T ss_pred CCceEecC
Confidence 69999996
No 6
>2g6t_A Uncharacterized protein, homolog HI1244 from haemophilus influenzae; hypothetical protein, structural genomics, PSI; 3.00A {Clostridium acetobutylicum} SCOP: c.147.1.1
Probab=14.92 E-value=1.6e+02 Score=28.61 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=38.4
Q ss_pred chhHHHHHHHHHhhcccCCCCCCceeEEeCCeecccCCCceeeeeecCCCCCCCeEEEEEecCCCCcccccCCChhHHHH
Q 035508 88 GYLPLLVGLIKPYFGSSLPPGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKW 167 (379)
Q Consensus 88 SYLpL~lp~I~~~F~~~l~~~~~~~WFE~egvPLKWh~PiGVLyDll~~~~~lPW~LtvHf~~~P~~~Ll~~~~~e~vk~ 167 (379)
-|+ -++..+..|+...+......=|++. .||||.|= . +.. .|++||-.| .+.+..+.
T Consensus 145 DyI-k~L~Nl~~Y~~~eL~f~~~~~~~~~-------~YPVG~L~-~--~~~----DIeIhFlHY--------~sfeEAk~ 201 (306)
T 2g6t_A 145 DYI-KFLENMDYYLEQELKVEQEGNVYSC-------TMPKGSLG-T--GDN----KIILNFNHQ--------ASFAEAKN 201 (306)
T ss_dssp HHH-HHHHSHHHHHHSCCCCSBCCBGGGT-------BCCEEEEC-C--STT----CEEEEECSC--------SSHHHHHH
T ss_pred HHH-HHHHCHHHHhcCCeEEecCCccccC-------CCceEEcc-C--CCC----CeEEEEEec--------CCHHHHHH
Confidence 444 3456666666655432222333333 79999993 2 111 288999655 45677777
Q ss_pred HHHHHHhhh
Q 035508 168 SFINSLKEA 176 (379)
Q Consensus 168 ~FmnsLKEA 176 (379)
-|--..|--
T Consensus 202 KW~~R~kRI 210 (306)
T 2g6t_A 202 DWDERKTRI 210 (306)
T ss_dssp HHHHHGGGC
T ss_pred HHHHHHHhc
Confidence 777666543
No 7
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=10.03 E-value=4.3e+02 Score=22.87 Aligned_cols=53 Identities=13% Similarity=0.337 Sum_probs=34.3
Q ss_pred CCCceeeeeecC--------CCCCCCeEEEEEecCCCC-cccccCCChhHHHHHHHHHHhhhhh
Q 035508 124 YTPTGVLFDLLC--------AEPERPWNLTVHFRGYPV-HVLIPCEGEDSVKWSFINSLKEAAY 178 (379)
Q Consensus 124 h~PiGVLyDll~--------~~~~lPW~LtvHf~~~P~-~~Ll~~~~~e~vk~~FmnsLKEAdf 178 (379)
.+..|++ ||.. +....+|-+.|.+.+... ...+-+++.+.+. -||..+|||-+
T Consensus 87 ~l~kG~I-dL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~-dW~kaIreaa~ 148 (150)
T 2fjl_A 87 DLLRGVL-DVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQ-DWVKKIREVAQ 148 (150)
T ss_dssp TCCCEEE-CSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHH-HHHHHHHHHHT
T ss_pred ccccceE-ecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHH-HHHHHHHHHHh
Confidence 3446776 6543 123589999998865522 2445566766654 49999999965
No 8
>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}
Probab=7.39 E-value=1.9e+02 Score=27.91 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHcCChH
Q 035508 191 SQSDQVELWRSVMNGNLE 208 (379)
Q Consensus 191 sk~D~~qLW~sV~~~dfd 208 (379)
+++|+++||+++.++..|
T Consensus 238 ~~~dr~aL~~al~dG~id 255 (359)
T 3pnu_A 238 RYEDKEALCELAFSGYEK 255 (359)
T ss_dssp CHHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHHHhcCCCC
Confidence 468999999999999775
No 9
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=6.79 E-value=3.1e+02 Score=21.38 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=10.0
Q ss_pred cccHHHHHHHhc
Q 035508 298 CFTLRDAIKTLL 309 (379)
Q Consensus 298 ~~TLgdaL~~lL 309 (379)
-.||.|||...|
T Consensus 21 G~tlrdaL~KaL 32 (77)
T 1c1y_B 21 GMSLHDCLMKAL 32 (77)
T ss_dssp TCBHHHHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 469999998875
No 10
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=6.57 E-value=3.2e+02 Score=22.26 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=9.7
Q ss_pred cccHHHHHHHhc
Q 035508 298 CFTLRDAIKTLL 309 (379)
Q Consensus 298 ~~TLgdaL~~lL 309 (379)
-.||.|||...|
T Consensus 33 G~tlrdaL~KaL 44 (96)
T 3ny5_A 33 GVTVRDSLKKAL 44 (96)
T ss_dssp TCBHHHHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 469999998765
Done!