Query 035508
Match_columns 379
No_of_seqs 147 out of 204
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 05:13:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035508.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035508hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c1yb_ d.15.1.5 (B:) c-Raf1 R 13.5 64 0.0046 23.3 3.1 11 299-309 22-32 (77)
2 d2g6ta1 c.147.1.1 (A:1-305) Hy 12.9 1.5E+02 0.011 26.5 6.0 133 19-178 61-212 (305)
3 d1euvb_ d.15.1.1 (B:) SUMO-1 ( 12.4 52 0.0038 22.9 2.3 41 78-122 14-54 (79)
4 d2heqa1 b.34.20.1 (A:1-71) Unc 11.7 46 0.0034 23.2 1.7 18 119-136 6-23 (71)
5 d1wxma1 d.15.1.5 (A:8-80) A-Ra 11.6 57 0.0042 23.3 2.2 11 299-309 21-31 (73)
6 d2ysca1 b.72.1.1 (A:8-33) Amyl 10.5 28 0.002 20.5 0.1 10 120-129 15-24 (26)
7 d2r4ia1 d.17.4.15 (A:1-122) Un 9.9 1.1E+02 0.0079 21.5 3.5 20 195-214 11-30 (122)
8 d1et9a2 d.15.6.1 (A:96-204) St 9.3 1E+02 0.0075 23.7 3.1 32 251-304 4-35 (109)
9 d1xrta2 c.1.9.6 (A:56-365) Two 7.9 49 0.0036 28.3 0.7 18 191-208 228-245 (310)
10 d1x41a1 a.4.1.1 (A:8-54) Trans 7.8 1.2E+02 0.0087 19.2 2.5 28 190-217 4-31 (47)
No 1
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.45 E-value=64 Score=23.27 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=9.9
Q ss_pred ccHHHHHHHhc
Q 035508 299 FTLRDAIKTLL 309 (379)
Q Consensus 299 ~TLgdaL~~lL 309 (379)
.||.|+|..+|
T Consensus 22 ~tird~L~k~l 32 (77)
T d1c1yb_ 22 MSLHDCLMKAL 32 (77)
T ss_dssp CBHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 69999999886
No 2
>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185 {Clostridium acetobutylicum [TaxId: 1488]}
Probab=12.93 E-value=1.5e+02 Score=26.51 Aligned_cols=133 Identities=17% Similarity=0.203 Sum_probs=70.5
Q ss_pred cEEEEecChHH--Hhh----hccCCcccCCCC----CcccHHHHHHHhcCcccEEEEeccCCCCC--------CCCCCCE
Q 035508 19 QFIIIANTSSI--IRH----HRRRDRISLNRN----RNMHMEARKYVWEGAIPLQIHLHESEVTT--------LPPPPPA 80 (379)
Q Consensus 19 ~~~~~~~~~~~--~~~----~~~~~~~~~~~~----~~m~~eirr~vWeG~IPV~I~L~~~e~~~--------~~~p~p~ 80 (379)
.+|||||-... +.| -|-+|+-=+|-| +|+|-+-..++=+-. |++-.+.|.+ .+-..|+
T Consensus 61 dyi~i~~~e~~~~~k~~~~~~gi~~~k~~~~~~f~~~~fd~~~y~~L~n~d----fTIISnNCwGg~iY~~Lgl~f~SPf 136 (305)
T d2g6ta1 61 DYIIIFNKERYSDIKNEALELGIPERKILNGKFFFISNFDFKRYCKLIENP----ITIISDDCWGGLVSSYLGFKFNSPF 136 (305)
T ss_dssp SEEEECCTTTHHHHHHHHHHTTCCGGGEECSGGGGSTTCCHHHHHHHHHTT----CEEEESSSHHHHHHHHHTCCCCSSC
T ss_pred cEEEEeChHHHHHHHHHHHHcCCChheEEeeEEEEecccCHHHHHHhhcCC----cEEEeCccHhHHHHHHcCCCcCCCc
Confidence 57999997542 222 233444334444 345643333433333 3343455532 1122333
Q ss_pred E-EEecccchhHHHHHHHHHhhcccCCCCCCceeEEeCCeecccCCCceeeeeecCCCCCCCeEEEEEecCCCCcccccC
Q 035508 81 L-ILAPRIGYLPLLVGLIKPYFGSSLPPGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPC 159 (379)
Q Consensus 81 y-~~vPR~SYLpL~lp~I~~~F~~~l~~~~~~~WFE~egvPLKWh~PiGVLyDll~~~~~lPW~LtvHf~~~P~~~Ll~~ 159 (379)
. +.+.=.-|+= ++..++.|+...+ =|+.++..-++.||+|.|= +++ . .|++||-.|
T Consensus 137 InL~i~p~DYIK-~L~Nl~~Y~~~eL-------~~~~~~~~y~~~YPvG~LG---~gd--~--DIeIhFlHY-------- 193 (305)
T d2g6ta1 137 INFYIHNDDYIK-FLENMDYYLEQEL-------KVEQEGNVYSCTMPKGSLG---TGD--N--KIILNFNHQ-------- 193 (305)
T ss_dssp CSEECCHHHHHH-HHHSHHHHHHSCC-------CCSBCCBGGGTBCCEEEEC---CST--T--CEEEEECSC--------
T ss_pred eeEEEccHHHHH-HHHCHHHHhcCCe-------eEecccccccccCcceecc---CCC--C--cEEEEEeec--------
Confidence 2 1111133432 3455555665433 2555667778899999972 111 1 689998554
Q ss_pred CChhHHHHHHHHHHhhhhh
Q 035508 160 EGEDSVKWSFINSLKEAAY 178 (379)
Q Consensus 160 ~~~e~vk~~FmnsLKEAdf 178 (379)
.+.+..++-|.-..|--++
T Consensus 194 ~SfeEAk~KW~~R~kRIN~ 212 (305)
T d2g6ta1 194 ASFAEAKNDWDERKTRINK 212 (305)
T ss_dssp SSHHHHHHHHHHHGGGCCT
T ss_pred CCHHHHHHHHHHHHhhcch
Confidence 5678888888877776554
No 3
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Probab=12.38 E-value=52 Score=22.88 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=28.4
Q ss_pred CCEEEEecccchhHHHHHHHHHhhcccCCCCCCceeEEeCCeecc
Q 035508 78 PPALILAPRIGYLPLLVGLIKPYFGSSLPPGVDTIWFEYKGLPLK 122 (379)
Q Consensus 78 ~p~y~~vPR~SYLpL~lp~I~~~F~~~l~~~~~~~WFE~egvPLK 122 (379)
..+++.|-|.+=+--+...+.+.+ ....+.++|-|+|..|+
T Consensus 14 ~~~~f~v~~~~~~~~l~~~~~~~~----~i~~~~~~l~f~G~~l~ 54 (79)
T d1euvb_ 14 SEIFFKIKKTTPLRRLMEAFAKRQ----GKEMDSLRFLYDGIRIQ 54 (79)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHT----TCCGGGEEEEETTEECC
T ss_pred eEEEEEECCCCcHHHHHHHHHHHh----CCChHhEEEEECCEEeC
Confidence 347788998886555554444443 33457899999999986
No 4
>d2heqa1 b.34.20.1 (A:1-71) Uncharacterized protein YorP {Bacillus subtilis [TaxId: 1423]}
Probab=11.71 E-value=46 Score=23.15 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=14.5
Q ss_pred eecccCCCceeeeeecCC
Q 035508 119 LPLKWYTPTGVLFDLLCA 136 (379)
Q Consensus 119 vPLKWh~PiGVLyDll~~ 136 (379)
.|-.|.||+|+...+...
T Consensus 6 lpkywsypvglaveinnn 23 (71)
T d2heqa1 6 LPKYWSYPVGLAVEINNN 23 (71)
T ss_dssp CCSSCCSCTTCEEEECTT
T ss_pred CcccccccccEEEEecCC
Confidence 466799999999998653
No 5
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.60 E-value=57 Score=23.30 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=9.7
Q ss_pred ccHHHHHHHhc
Q 035508 299 FTLRDAIKTLL 309 (379)
Q Consensus 299 ~TLgdaL~~lL 309 (379)
.|+.|+|..+|
T Consensus 21 ~tir~~L~k~l 31 (73)
T d1wxma1 21 MSVYDSLDKAL 31 (73)
T ss_dssp CBSHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 69999999886
No 6
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.47 E-value=28 Score=20.50 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=7.8
Q ss_pred ecccCCCcee
Q 035508 120 PLKWYTPTGV 129 (379)
Q Consensus 120 PLKWh~PiGV 129 (379)
--.||+|.|.
T Consensus 15 ~YyWHiPtGt 24 (26)
T d2ysca1 15 TYYWHVPSGS 24 (26)
T ss_dssp EEEEESSSCC
T ss_pred eEEEeccCCc
Confidence 3579999985
No 7
>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}
Probab=9.94 E-value=1.1e+02 Score=21.47 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 035508 195 QVELWRSVMNGNLEAYLRVS 214 (379)
Q Consensus 195 ~~qLW~sV~~~dfd~F~~In 214 (379)
.++||.++.++|.+.+..+-
T Consensus 11 ~~~~~~A~~~~D~~~l~~l~ 30 (122)
T d2r4ia1 11 EKKLLTAIQNNDVESLEVLL 30 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHHE
T ss_pred HHHHHHHHHCCCHHHHHhhh
Confidence 47899999999999988754
No 8
>d1et9a2 d.15.6.1 (A:96-204) Streptococcal superantigen Spe-H {Streptococcus pyogenes [TaxId: 1314]}
Probab=9.31 E-value=1e+02 Score=23.65 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=21.4
Q ss_pred cccceeEEEeccCCCCCCCCCCCCCCCCccccceeeeceeeecCCCccccHHHH
Q 035508 251 TGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRTEEGKCFTLRDA 304 (379)
Q Consensus 251 ~r~IPvRIYlp~~~~~~~~~~d~~~~~~~~~~~~iQ~pv~p~~~dG~~~TLgda 304 (379)
.+.|||.||.-+ .|.|.....-+.+..|++++
T Consensus 4 ~~~Ipvnv~~~g----------------------~q~~~~~I~t~Kk~VT~QEl 35 (109)
T d1et9a2 4 EIKVPVNVWDKS----------------------KQQPPMFITVNKPKVTAQEV 35 (109)
T ss_dssp CEEEEEEEEETT----------------------EECCCEEEEECSSEEEHHHH
T ss_pred ccEeeEEEEEcC----------------------CcccceEEEecCcEEehhhh
Confidence 588999999832 23344444457778888775
No 9
>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}
Probab=7.85 E-value=49 Score=28.28 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHcCChH
Q 035508 191 SQSDQVELWRSVMNGNLE 208 (379)
Q Consensus 191 sk~D~~qLW~sV~~~dfd 208 (379)
+++|+++||++|.++..+
T Consensus 228 ~~~d~~aL~~al~~G~id 245 (310)
T d1xrta2 228 KKEDRLALIEGVKRGIID 245 (310)
T ss_dssp --CCHHHHHHHHHHTCSC
T ss_pred CHHHHHHHHHHHhcCCCe
Confidence 678999999999998754
No 10
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.80 E-value=1.2e+02 Score=19.19 Aligned_cols=28 Identities=14% Similarity=0.387 Sum_probs=23.7
Q ss_pred cCHHHHHHHHHHHHcCChHHHHHHHhcc
Q 035508 190 MSQSDQVELWRSVMNGNLEAYLRVSSKL 217 (379)
Q Consensus 190 Lsk~D~~qLW~sV~~~dfd~F~~In~KL 217 (379)
=+.++...|-++|+.+....+..|++.|
T Consensus 4 Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~ 31 (47)
T d1x41a1 4 WTAQEEMALLEAVMDCGFGNWQDVANQM 31 (47)
T ss_dssp SCHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCccHHHHHHHc
Confidence 3678899999999999888888888765
Done!