BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035509
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis
thaliana GN=AHP4 PE=1 SV=2
Length = 127
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 10 IATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPI 69
I Q +LDE QF++LE + + +P F E+ +LYF+++ ++I +++ +
Sbjct: 4 IGKCMQGYLDE-----QFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSF 58
Query: 70 DYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAK 129
D+N L+ +H FKG SIGASKV E R C GN EG +++K E TL+ K
Sbjct: 59 DFNRLDSYMHQFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKK 118
Query: 130 LDSYFQ 135
L+ YFQ
Sbjct: 119 LEHYFQ 124
>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis
thaliana GN=AHP3 PE=1 SV=2
Length = 155
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 8/138 (5%)
Query: 10 IATMRQSFLDEEI-------LNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEE 62
IA +++ F D I L+DQF +L+ + E P F + V+L+F++ K+I+ +
Sbjct: 5 IAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMAR 64
Query: 63 EFVKDP-IDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKV 121
+ +D+ + +H KG S+GA +V + CCD+ N EG L++V +
Sbjct: 65 ALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDI 124
Query: 122 EQETLKAKLDSYFQLVKQ 139
E +TLKAKL F L +Q
Sbjct: 125 EYKTLKAKLQDLFNLEQQ 142
>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis
thaliana GN=AHP2 PE=1 SV=1
Length = 156
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 6 LHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEF- 64
L +Q S + L+DQF +L+ + + P F + +SL+F++ K+I+ +
Sbjct: 8 LQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARALD 67
Query: 65 VKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQE 124
+D++ + +H KG S+GA +V + CC+ N EG L++V +E +
Sbjct: 68 TTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEYK 127
Query: 125 TLKAKLDSYFQLVKQ 139
LK KL F L KQ
Sbjct: 128 ALKTKLQDMFNLEKQ 142
>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis
thaliana GN=AHP5 PE=1 SV=2
Length = 157
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 6 LHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFV 65
L +Q S + L++QF +L + E P F + VSL+F + +K+I T+
Sbjct: 9 LQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSISLE 68
Query: 66 K-DPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQE 124
+ D +D+ ++ +H KG S+GA +V + CCD N EG L++V E +
Sbjct: 69 RPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDYEYK 128
Query: 125 TLKAKLDSYFQLVKQ 139
LK KL F L KQ
Sbjct: 129 MLKTKLQDLFNLEKQ 143
>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis
thaliana GN=AHP1 PE=1 SV=1
Length = 154
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 69/125 (55%)
Query: 15 QSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNAL 74
+S E IL+ QF+QL+ + E +P F V+L+FQ++ +I+ L + +D+ +
Sbjct: 15 KSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKV 74
Query: 75 EKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYF 134
+ +H KG SIGA +V R+ C+ N+E L++VK E +K +L++ F
Sbjct: 75 DPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLF 134
Query: 135 QLVKQ 139
+L +Q
Sbjct: 135 KLEQQ 139
>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa
subsp. japonica GN=HP1 PE=1 SV=1
Length = 149
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 1 MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDD-PAFAEDTVSLYFQETTKII-- 57
M L Q+ + S + ++++QF QL+ + E P F + V+L+ + +II
Sbjct: 1 MAAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINE 60
Query: 58 -ATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAAL 116
ATL E+ V ++++ ++ +H KG S+GA KV + R C + + +G AL
Sbjct: 61 IATLLEQPV---VNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMAL 117
Query: 117 EKVKVEQETLKAKLDSYFQLVKQ 139
V+ + L+ K + QL +Q
Sbjct: 118 AVVRNDFYDLRNKFQTMLQLEQQ 140
>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis
thaliana GN=AHP6 PE=2 SV=2
Length = 154
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 39 PAFAEDTVSLYFQETTK-----IIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKV 93
P F D +++YF E+ K + ++ EF DY + L+ G SIGA +V
Sbjct: 42 PNFVYDVINIYFDESEKLLRNLRLLLMDREFS----DYKKIGLHLNQLVGSSSSIGARRV 97
Query: 94 LIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQ 139
R+ + N G LE V+ E LK + FQL +Q
Sbjct: 98 RNVCVAFRSASELSNRPGCLRGLEVVEHEYHYLKNMMHELFQLEQQ 143
>sp|P02535|K1C10_MOUSE Keratin, type I cytoskeletal 10 OS=Mus musculus GN=Krt10 PE=1 SV=3
Length = 570
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 66 KDPIDYNALEKCLHDFKG--LCVSIGASKVLIEVNKARACCDN 106
++P DY+ K + D KG L ++ + VL++++ AR D+
Sbjct: 189 REPRDYSKYYKTIEDLKGQILTLTTDNANVLLQIDNARLAADD 231
>sp|P08342|VL2_BPV4 Minor capsid protein L2 OS=Bovine papillomavirus type 4 GN=L2 PE=3
SV=1
Length = 357
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
Query: 1 MENNPLHQQIA-TMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQE 52
+ N L QQ+ T R +FL + QF+Q E D+PA+ +D++SL FQ+
Sbjct: 263 LYNRKLVQQVKITNRNTFLKQP---SQFVQWEF----DNPAYVDDSLSLIFQQ 308
>sp|Q6IFW6|K1C10_RAT Keratin, type I cytoskeletal 10 OS=Rattus norvegicus GN=Krt10 PE=2
SV=1
Length = 526
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 66 KDPIDYNALEKCLHDFKGLCVSIGA--SKVLIEVNKARACCDN 106
++P DY+ K + D KG V++ + VL++++ AR D+
Sbjct: 190 REPRDYSKYYKTIEDLKGQIVNLTTDNANVLLQIDNARLAADD 232
>sp|A4J7M0|TIG_DESRM Trigger factor OS=Desulfotomaculum reducens (strain MI-1) GN=tig
PE=3 SV=1
Length = 435
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 14/70 (20%)
Query: 55 KIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEV--NKARACCDNGNIEGG 112
K +A+L++EF KD +++ L++ D + K L+EV A++ +NG +E
Sbjct: 245 KELASLDDEFAKDVSEFDTLDELKSDIR---------KKLMEVAERTAKSSVENGAVE-- 293
Query: 113 KAALEKVKVE 122
AA+EK VE
Sbjct: 294 -AAVEKATVE 302
>sp|Q6PFQ2|EIF3C_DANRE Eukaryotic translation initiation factor 3 subunit C OS=Danio
rerio GN=eif3c PE=1 SV=1
Length = 926
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 50 FQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIE 96
F+E T +I T +++ I + KCL +F+ LC + SK +++
Sbjct: 57 FEELTNLIKT-----IRNAIKIRGISKCLEEFEQLCRAFVKSKTIVD 98
>sp|Q8RKI8|TARB_BACPZ Putative CDP-glycerol:glycerophosphate glycerophosphotransferase
TarB OS=Bacillus subtilis subsp. spizizenii (strain ATCC
23059 / NRRL B-14472 / W23) GN=tarB PE=3 SV=1
Length = 383
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 31 ESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCL----HDFKGLCV 86
ES +D A+ +D L + K+ L ++ P ++ L+K + +D +
Sbjct: 259 ESAELPEDSAWIKDVSDLPLADLLKMSDLLISDYSSVPFEFALLDKPILFYTYDMEAYNR 318
Query: 87 SIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSY 133
+ G + EV CCD+G + ++K++ E E + + Y
Sbjct: 319 TRGLIRHYTEVIPGMPCCDSGMLLDQLKDMDKLQSEVERFSREWNLY 365
>sp|O78429|RK21_GUITH 50S ribosomal protein L21, chloroplastic OS=Guillardia theta
GN=rpl21 PE=3 SV=1
Length = 104
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 78 LHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETL 126
+DF L V G I + + DNGNI GK L+ VKVE L
Sbjct: 20 FYDFNSLNVEPGDK---IALTRVLLINDNGNITVGKPCLDNVKVEATVL 65
>sp|Q1LXZ9|SKR1B_DANRE SKI family transcriptional corepressor 1 homolog-B OS=Danio rerio
GN=skor1b PE=2 SV=1
Length = 751
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 60 LEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEG-GKAALEK 118
+ EE +K+P D A D + +C G LIE NIE K L+K
Sbjct: 631 ISEERLKEPNDVCA------DEEAICKDTGNRGSLIE----------KNIESMAKEELQK 674
Query: 119 VKVEQETLKAKLDSYFQLVKQS 140
VEQ L+ KL+ FQ +K S
Sbjct: 675 QLVEQVELRKKLEREFQNLKDS 696
>sp|Q9Q8K4|ETF2_MYXVL Early transcription factor 82 kDa subunit OS=Myxoma virus (strain
Lausanne) GN=VETFL PE=3 SV=1
Length = 711
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%)
Query: 15 QSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNAL 74
Q + +++N + + T+ +F +F E KII + + +K+ I Y+ +
Sbjct: 463 QKEIASDVINPYILNFGKVVTKSKISFLPIIFDSFFNEGVKIIFEQDNKRLKETIGYHVI 522
Query: 75 EKCLHDFKGL 84
+ C D K L
Sbjct: 523 KSCDEDIKRL 532
>sp|P39847|PPSC_BACSU Plipastatin synthase subunit C OS=Bacillus subtilis (strain 168)
GN=ppsC PE=1 SV=2
Length = 2555
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 1 MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATL 60
M NPL + ++ +D+E L + L+ A D ++LY QE + + T
Sbjct: 1384 MSRNPLFDVMFVLQN--MDQESLELDELCLKPAANNGHQTSKFD-LTLYAQEQPRGLLTF 1440
Query: 61 EEEFVKDPIDYNALEKCLHDFKGLCVSI 88
+ EF D +EK L F + +SI
Sbjct: 1441 QMEFSTDLYKKKTIEKWLQYFNNMLLSI 1468
>sp|Q9UTJ8|RAD50_SCHPO DNA repair protein rad50 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad50 PE=1 SV=3
Length = 1285
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 20/121 (16%)
Query: 8 QQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLY--FQETTKIIATLEEEFV 65
QQ+ T+R +I+N L+S T D + +ED L+ F E K EE+ +
Sbjct: 265 QQMITIRHLESQSDIINTTINDLKSQMTITDES-SEDLEKLHSNFAEKVK-----EEQEL 318
Query: 66 KDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQET 125
Y +LEK D + L + + + L+E + D G I+G +LEK+KV++ T
Sbjct: 319 -----YKSLEKKRSDLESL---LKSRRELLE----KLTGDLGKIQGEIESLEKLKVKKST 366
Query: 126 L 126
+
Sbjct: 367 M 367
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,862,371
Number of Sequences: 539616
Number of extensions: 1767675
Number of successful extensions: 5174
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 5151
Number of HSP's gapped (non-prelim): 45
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)