Query 035509
Match_columns 140
No_of_seqs 108 out of 372
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 8.8E-40 3E-44 242.8 14.2 140 1-140 1-140 (153)
2 1yvi_A Histidine-containing ph 100.0 5.6E-37 1.9E-41 226.1 13.8 138 3-140 3-141 (149)
3 2r25_A Phosphorelay intermedia 100.0 2.7E-30 9.3E-35 194.1 11.8 118 16-135 2-164 (167)
4 2a0b_A HPT domain; sensory tra 99.9 5.7E-23 2E-27 146.3 11.1 114 17-135 6-120 (125)
5 1y6d_A Phosphorelay protein LU 99.8 2E-21 6.7E-26 138.5 -1.4 105 27-133 14-118 (120)
6 3myf_A Sensor protein; HPT, hi 99.8 1.4E-18 4.8E-23 123.5 12.7 113 18-135 1-114 (119)
7 2ooc_A Histidine phosphotransf 99.7 2.6E-18 8.8E-23 121.2 7.8 100 21-135 9-108 (113)
8 3iqt_A Signal transduction his 99.7 7.8E-18 2.7E-22 120.5 9.9 109 21-134 13-122 (123)
9 1sr2_A Putative sensor-like hi 99.6 2.7E-16 9.4E-21 111.4 7.3 88 37-126 28-115 (116)
10 1tqg_A Chemotaxis protein CHEA 99.6 5.1E-15 1.7E-19 102.0 8.3 91 42-132 3-102 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 3.6E-13 1.2E-17 97.6 7.6 91 43-133 3-102 (139)
12 1i5n_A Chemotaxis protein CHEA 99.4 5.4E-13 1.9E-17 97.5 7.3 91 43-133 6-105 (146)
13 2lch_A Protein OR38; structura 99.4 7.5E-13 2.6E-17 92.4 7.2 90 43-132 5-103 (113)
14 3kyj_A CHEA3, putative histidi 99.0 1E-09 3.6E-14 80.0 7.9 91 42-132 9-108 (144)
15 2lp4_A Chemotaxis protein CHEA 98.7 3.6E-08 1.2E-12 76.2 8.3 88 43-130 6-102 (225)
16 2di0_A Activating signal coint 80.4 2.2 7.6E-05 27.1 3.9 44 19-62 9-52 (71)
17 2cw9_A Translocase of inner mi 72.3 10 0.00035 27.9 6.3 82 7-107 22-104 (194)
18 2kmf_A Photosystem II 11 kDa p 67.5 24 0.00082 24.2 6.9 86 46-132 13-113 (115)
19 3err_A Fusion protein of micro 64.1 37 0.0013 29.0 8.9 87 38-134 117-207 (536)
20 2e2a_A Protein (enzyme IIA); h 57.3 41 0.0014 22.6 7.2 44 96-139 23-66 (105)
21 3bvo_A CO-chaperone protein HS 57.2 52 0.0018 24.4 7.7 17 105-121 176-192 (207)
22 1gp8_A Protein (scaffolding pr 56.4 14 0.00046 20.7 3.2 16 68-83 23-38 (40)
23 1wcr_A PTS system, N, N'-diace 55.8 43 0.0015 22.4 6.8 44 96-139 21-64 (103)
24 2y6x_A PSB27, photosystem II 1 51.6 55 0.0019 22.3 8.6 85 47-132 10-109 (113)
25 1wjt_A Transcription elongatio 50.7 11 0.00037 25.3 2.6 40 90-130 11-50 (103)
26 3l8r_A PTCA, putative PTS syst 50.4 59 0.002 22.4 7.2 43 97-139 41-83 (120)
27 4igg_A Catenin alpha-1; asymme 49.9 1.5E+02 0.005 26.8 11.4 128 4-134 257-421 (832)
28 3k1s_A PTS system, cellobiose- 49.8 57 0.0019 22.0 7.2 43 97-139 26-68 (109)
29 2rg8_A Programmed cell death p 47.5 73 0.0025 22.6 7.4 51 1-51 4-55 (165)
30 3uo3_A J-type CO-chaperone JAC 46.1 82 0.0028 22.8 7.7 40 91-131 132-171 (181)
31 3zta_A MTR, anti-sigma-factor 42.5 24 0.00082 24.1 3.3 40 42-87 83-122 (146)
32 3qk9_A Mitochondrial import in 40.3 7.7 0.00026 29.5 0.6 72 17-107 55-127 (222)
33 1txp_A HnRNP C, heterogeneous 37.8 40 0.0014 17.3 3.0 19 117-135 2-20 (28)
34 3hho_A CO-chaperone protein HS 36.3 1.1E+02 0.0039 21.7 7.0 75 38-131 91-166 (174)
35 3oj5_A Ferritin family protein 35.9 92 0.0032 22.1 6.0 72 23-94 102-177 (189)
36 4fla_A Regulation of nuclear P 35.1 1.2E+02 0.0041 21.5 9.3 55 4-65 42-96 (152)
37 2nsz_A Programmed cell death p 32.9 86 0.0029 21.2 5.1 45 2-49 2-46 (129)
38 2f4m_B UV excision repair prot 31.3 52 0.0018 19.9 3.3 37 25-62 11-47 (61)
39 3swy_A Cyclic nucleotide-gated 28.9 84 0.0029 18.0 3.7 32 108-139 13-45 (46)
40 1fpo_A HSC20, chaperone protei 28.6 1.6E+02 0.0054 20.9 8.9 54 70-132 110-163 (171)
41 2wm9_A Dedicator of cytokinesi 28.5 2.4E+02 0.0082 22.9 8.1 46 46-91 307-352 (428)
42 1h3o_B Transcription initiatio 28.1 90 0.0031 19.7 4.1 26 39-64 29-54 (76)
43 3ay5_A Cyclin-D1-binding prote 27.5 82 0.0028 25.3 4.8 74 52-132 283-356 (360)
44 2ion_A PDCD4, programmed cell 26.8 1.2E+02 0.0041 21.2 5.1 44 3-49 5-48 (152)
45 3p9y_A CG14216, LD40846P; phos 25.4 44 0.0015 25.1 2.6 18 85-102 151-168 (198)
46 2vs0_A Virulence factor ESXA; 24.1 1.3E+02 0.0043 18.3 7.1 64 69-133 6-72 (97)
47 4h3k_B RNA polymerase II subun 23.8 63 0.0021 24.5 3.2 19 85-103 167-185 (214)
48 3do9_A UPF0302 protein BA_1542 23.8 77 0.0026 23.4 3.7 28 54-83 152-179 (188)
49 1ug7_A 2610208M17RIK protein; 23.8 47 0.0016 23.2 2.3 46 83-132 1-51 (128)
50 2r6a_C DNAG primase, helicase 23.5 1.6E+02 0.0054 19.2 5.1 49 70-121 87-135 (143)
51 1ug3_A EIF4GI, eukaryotic prot 22.4 53 0.0018 25.8 2.7 51 2-52 6-57 (339)
52 3vhl_A Dedicator of cytokinesi 22.2 2.7E+02 0.0094 21.5 9.8 44 50-93 171-214 (288)
53 3fkr_A L-2-keto-3-deoxyarabona 21.6 83 0.0028 24.5 3.7 40 82-121 210-249 (309)
54 2c41_A DPS family DNA-binding 20.4 2.1E+02 0.0071 19.4 5.5 28 39-66 125-152 (158)
55 3swf_A CGMP-gated cation chann 20.3 1.7E+02 0.0059 18.4 4.7 27 108-134 15-41 (74)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=100.00 E-value=8.8e-40 Score=242.76 Aligned_cols=140 Identities=31% Similarity=0.527 Sum_probs=135.9
Q ss_pred CCChhHHHHHHHHHhcccchhhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhh
Q 035509 1 MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHD 80 (140)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~ 80 (140)
|++.+|++++.++++|++++|+||++|++|++|+++++|+|+.++|..|++|+++.+..|+.|+..++.|+.+++++||+
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~ 80 (153)
T 3us6_A 1 MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQ 80 (153)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999766699999999999
Q ss_pred hccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 035509 81 FKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQS 140 (140)
Q Consensus 81 LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~~~ 140 (140)
|||||+||||.+|+.+|.++|.+|+.++.+++..++.+++.+|..++.+|++|+++|||+
T Consensus 81 LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~ 140 (153)
T 3us6_A 81 FKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQI 140 (153)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999974
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=100.00 E-value=5.6e-37 Score=226.14 Aligned_cols=138 Identities=24% Similarity=0.474 Sum_probs=130.6
Q ss_pred ChhHHHHHHHHHhcccchhhhHHHHHHHHhcccCCC-hhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhh
Q 035509 3 NNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDD-PAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDF 81 (140)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~lD~~f~~L~~L~~~~~-~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~L 81 (140)
+++|++|+.+|+++++++|+||.+|++|++|+++++ |+|+.+||.+|++|+++.+..|+.|++.+++|+.+++.++|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~L 82 (149)
T 1yvi_A 3 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL 82 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 468999999999999999999977999999988888 9999999999999999999999999997666999999999999
Q ss_pred ccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 035509 82 KGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQS 140 (140)
Q Consensus 82 KGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~~~ 140 (140)
||||+||||.+|+.+|.++|..++.++.+++..++.+++.+|..++.+|++|+++|||+
T Consensus 83 KGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~ 141 (149)
T 1yvi_A 83 KGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQI 141 (149)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999984
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.97 E-value=2.7e-30 Score=194.06 Aligned_cols=118 Identities=16% Similarity=0.280 Sum_probs=110.8
Q ss_pred cccchhhhHH-HHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHH
Q 035509 16 SFLDEEILND-QFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVL 94 (140)
Q Consensus 16 ~~~~~~~lD~-~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~ 94 (140)
||.++|+||. +|.+|++|++++ |+|+.+||.+|++|++++|..|++|+. .++|+.+++.++|+|||||+||||.+|+
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~ 79 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIA 79 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5788999995 799999999887 999999999999999999999999998 3359999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC------------HH--------------------------------HHHHHHHHHHHHHHHHHHHH
Q 035509 95 IEVNKARACCDNGN------------IE--------------------------------GGKAALEKVKVEQETLKAKL 130 (140)
Q Consensus 95 ~lc~~lE~~~~~~~------------~~--------------------------------~~~~~l~~l~~ef~~~~~~L 130 (140)
.+|.+||++|+.++ .+ +|...|.+++.+|..++.+|
T Consensus 80 ~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~L 159 (167)
T 2r25_A 80 WVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIEL 159 (167)
T ss_dssp HHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 44 78999999999999999999
Q ss_pred HHHHH
Q 035509 131 DSYFQ 135 (140)
Q Consensus 131 ~~~l~ 135 (140)
++|++
T Consensus 160 ~~~~~ 164 (167)
T 2r25_A 160 SKYYN 164 (167)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 99975
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.89 E-value=5.7e-23 Score=146.25 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=104.6
Q ss_pred ccchhhhHHH-HHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHH
Q 035509 17 FLDEEILNDQ-FIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLI 95 (140)
Q Consensus 17 ~~~~~~lD~~-f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~ 95 (140)
+.+.++||.. +.+|..+ .|++|+.+++..|++++++.+..|+.++..+ |+..+++.||+|||||+|+|+.+|+.
T Consensus 6 ~~~~~~lD~~~l~~l~~~---~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~~ 80 (125)
T 2a0b_A 6 SKSEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQ 80 (125)
T ss_dssp CHHHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3456778844 6677666 7899999999999999999999999999975 99999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509 96 EVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQ 135 (140)
Q Consensus 96 lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~ 135 (140)
+|..+|..++.++.+++..++..|..+|.+++.+|+.|+.
T Consensus 81 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~ 120 (125)
T 2a0b_A 81 LGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVA 120 (125)
T ss_dssp HHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876
No 5
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.80 E-value=2e-21 Score=138.47 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=87.2
Q ss_pred HHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhc
Q 035509 27 FIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDN 106 (140)
Q Consensus 27 f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~ 106 (140)
+..|.+|+++.||+++.+++..|+++++++|..|+.+...+ |+..+.+.+|+|||||+|+||.+|+.+|.++|..+|.
T Consensus 14 ~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~~~r~ 91 (120)
T 1y6d_A 14 QQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKA 91 (120)
T ss_dssp TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHHHHhC
Confidence 44566777778999999999999999999999999987654 7888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509 107 GNIEGGKAALEKVKVEQETLKAKLDSY 133 (140)
Q Consensus 107 ~~~~~~~~~l~~l~~ef~~~~~~L~~~ 133 (140)
|+...+......+...+.+++..++.+
T Consensus 92 g~~~~~~~~~~~l~~~l~~~~d~l~~~ 118 (120)
T 1y6d_A 92 NQLQEQGMETSEMLALLHITRDAYRSW 118 (120)
T ss_dssp HHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred CChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 988755555555555555566665554
No 6
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.79 E-value=1.4e-18 Score=123.53 Aligned_cols=113 Identities=9% Similarity=0.167 Sum_probs=98.5
Q ss_pred cchhhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHH
Q 035509 18 LDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEV 97 (140)
Q Consensus 18 ~~~~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc 97 (140)
+|..++|-+ .+.++ -.|++++..+|+.+|+++.|+.+..|+.++..+ |++.+.+.+|+|||||+++||++|..+|
T Consensus 1 ~~~~~~D~~--~~l~~-~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~ 75 (119)
T 3myf_A 1 FDLHTLNWD--LCLTQ-ANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLC 75 (119)
T ss_dssp -CTTTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCccccCHH--HHHHH-hCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 355667733 33333 237899999999999999999999999999976 9999999999999999999999999999
Q ss_pred HHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509 98 NKARACCDNGN-IEGGKAALEKVKVEQETLKAKLDSYFQ 135 (140)
Q Consensus 98 ~~lE~~~~~~~-~~~~~~~l~~l~~ef~~~~~~L~~~l~ 135 (140)
..+|..++.|. .+.....+..+..+...+..+++.|+.
T Consensus 76 ~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~ 114 (119)
T 3myf_A 76 QEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLS 114 (119)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999985 578888999999999999999999986
No 7
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.75 E-value=2.6e-18 Score=121.16 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=85.0
Q ss_pred hhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHH
Q 035509 21 EILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKA 100 (140)
Q Consensus 21 ~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~l 100 (140)
+.+|-. .|..+ ..|+|+|+.+|+.+|++++++.+..|..+ . .|+ +++||+|||||+||||.+|+.+|.++
T Consensus 9 ~~iD~~--~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~--~~~---~~~aH~LKGsA~~iGA~~l~~~c~~l 78 (113)
T 2ooc_A 9 GAVDFA--YLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT--H--PGW---KDAVHTVKGAARGVGAFNLGEVCERC 78 (113)
T ss_dssp CCSCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT--S--TTH---HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcCHH--HHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh--h--HHH---HHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 446622 34443 44789999999999999999999999988 2 365 79999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509 101 RACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQ 135 (140)
Q Consensus 101 E~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~ 135 (140)
|..++. ....+..|+.++.++..+|..+++
T Consensus 79 E~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~ 108 (113)
T 2ooc_A 79 EAGQES-----LEGVRTALDAALLDIAAYAHEQAL 108 (113)
T ss_dssp HTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 567889999999999999998775
No 8
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.74 E-value=7.8e-18 Score=120.48 Aligned_cols=109 Identities=15% Similarity=0.193 Sum_probs=95.3
Q ss_pred hhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHH
Q 035509 21 EILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKA 100 (140)
Q Consensus 21 ~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~l 100 (140)
+++|-+ .+..+ -.|+|++..+|+.+|+++.|+.+..|+.++..+ |++.+++.+|+|||||+++||.+|..+|..|
T Consensus 13 ~~~D~~--~~l~~-a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~L 87 (123)
T 3iqt_A 13 ATLDWQ--LALRQ-AAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQLI 87 (123)
T ss_dssp GTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred CccCHH--HHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 456622 33333 237899999999999999999999999999965 8999999999999999999999999999999
Q ss_pred HHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509 101 RACCDNGNI-EGGKAALEKVKVEQETLKAKLDSYF 134 (140)
Q Consensus 101 E~~~~~~~~-~~~~~~l~~l~~ef~~~~~~L~~~l 134 (140)
|..++.|+. +.....+..+..+...+..+.++|+
T Consensus 88 E~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 88 EQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999965 4788889999999999999998885
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.65 E-value=2.7e-16 Score=111.42 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=80.4
Q ss_pred CChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 035509 37 DDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAAL 116 (140)
Q Consensus 37 ~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l 116 (140)
+.+..-.+++.+|++..++.+..|+.++..+ |+..++..||+||||++++|+..++.+|.++|..++.++.+.+...+
T Consensus 28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i 105 (116)
T 1sr2_A 28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYI 105 (116)
T ss_dssp HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456778899999999999999999999976 99999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHH
Q 035509 117 EKVKVEQETL 126 (140)
Q Consensus 117 ~~l~~ef~~~ 126 (140)
..|+..+..+
T Consensus 106 ~~L~~~l~~L 115 (116)
T 1sr2_A 106 SDIDSYVKSL 115 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888876654
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.58 E-value=5.1e-15 Score=102.01 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhc------CCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHh---hcCCHHHH
Q 035509 42 AEDTVSLYFQETTKIIATLEEEFVK------DPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACC---DNGNIEGG 112 (140)
Q Consensus 42 v~~Li~~fl~d~~~~l~~l~~Al~~------~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~---~~~~~~~~ 112 (140)
+.+++..|++++++++..|+.++.. +..++..+.+.+|+|||||+++|+..+..+|..+|... +.+.....
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~ 82 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKIT 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4689999999999999999999851 12367899999999999999999999999999999875 77887777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035509 113 KAALEKVKVEQETLKAKLDS 132 (140)
Q Consensus 113 ~~~l~~l~~ef~~~~~~L~~ 132 (140)
..+++.+...+..++..+..
T Consensus 83 ~~~~~~l~~~~d~l~~~l~~ 102 (105)
T 1tqg_A 83 SDLLDKIFAGVDMITRMVDK 102 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88889998888888777764
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.42 E-value=3.6e-13 Score=97.59 Aligned_cols=91 Identities=19% Similarity=0.289 Sum_probs=74.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhc------CCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHh---hcCCHHHHH
Q 035509 43 EDTVSLYFQETTKIIATLEEEFVK------DPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACC---DNGNIEGGK 113 (140)
Q Consensus 43 ~~Li~~fl~d~~~~l~~l~~Al~~------~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~---~~~~~~~~~ 113 (140)
.+++..|++++++.|..|..++.. +..++..+.+.+|+|||||+++|+..++.+|..+|... |.|......
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~ 82 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS 82 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 478999999999999999999841 23468899999999999999999999999999999864 677666556
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035509 114 AALEKVKVEQETLKAKLDSY 133 (140)
Q Consensus 114 ~~l~~l~~ef~~~~~~L~~~ 133 (140)
.+++.+...++.+...+..+
T Consensus 83 ~l~~~l~~~~D~l~~~l~~~ 102 (139)
T 2ld6_A 83 DLLDKIFAGVDMITRMVDKI 102 (139)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66777777777666666554
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.40 E-value=5.4e-13 Score=97.47 Aligned_cols=91 Identities=16% Similarity=0.333 Sum_probs=72.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhc---C---CCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHH---hhcCCHHHHH
Q 035509 43 EDTVSLYFQETTKIIATLEEEFVK---D---PIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARAC---CDNGNIEGGK 113 (140)
Q Consensus 43 ~~Li~~fl~d~~~~l~~l~~Al~~---~---~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~---~~~~~~~~~~ 113 (140)
.+++..|+++++++|..|+.++.. + ..++..+.+.+|+|||||+++|+..+..+|-.+|.. .|.+......
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~ 85 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 378999999999999999999932 1 124589999999999999999999999999999987 7788766556
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035509 114 AALEKVKVEQETLKAKLDSY 133 (140)
Q Consensus 114 ~~l~~l~~ef~~~~~~L~~~ 133 (140)
.+++.+...++.++..+..+
T Consensus 86 ~l~~~l~~~~D~l~~~l~~~ 105 (146)
T 1i5n_A 86 DIINLFLETKDIMQEQLDAY 105 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555443
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.39 E-value=7.5e-13 Score=92.43 Aligned_cols=90 Identities=18% Similarity=0.287 Sum_probs=74.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhc---CCC---CHHHHHHHhhhhccchhhcChHHHHHHHHHHHH---HhhcCCHHHHH
Q 035509 43 EDTVSLYFQETTKIIATLEEEFVK---DPI---DYNALEKCLHDFKGLCVSIGASKVLIEVNKARA---CCDNGNIEGGK 113 (140)
Q Consensus 43 ~~Li~~fl~d~~~~l~~l~~Al~~---~~~---D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~---~~~~~~~~~~~ 113 (140)
.+++..|+++++++|..|..++.. ++. ++..+.+.+|+|||||+++|+..++.+|-.+|. ..+.+......
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~ 84 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 488999999999999999999842 122 356799999999999999999999999999996 46777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035509 114 AALEKVKVEQETLKAKLDS 132 (140)
Q Consensus 114 ~~l~~l~~ef~~~~~~L~~ 132 (140)
.+++.+...++.+...+..
T Consensus 85 ~l~~~l~~~~d~l~~~l~~ 103 (113)
T 2lch_A 85 DLIDKVKKKLDMVTRELDK 103 (113)
T ss_dssp HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888888877777766654
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=99.00 E-value=1e-09 Score=80.05 Aligned_cols=91 Identities=18% Similarity=0.278 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhh---cCCCC---HHHHHHHhhhhccchhhcChHHHHHHHHHHHHH---hhcCCHHHH
Q 035509 42 AEDTVSLYFQETTKIIATLEEEFV---KDPID---YNALEKCLHDFKGLCVSIGASKVLIEVNKARAC---CDNGNIEGG 112 (140)
Q Consensus 42 v~~Li~~fl~d~~~~l~~l~~Al~---~~~~D---~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~---~~~~~~~~~ 112 (140)
..+++..|+++++++|..|...+. .++.| ...+.+.+|+|||||+.+|...+..+|-.+|.. .+.+...--
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~ 88 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD 88 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 468999999999999999999874 23323 458999999999999999999999999999985 466655444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035509 113 KAALEKVKVEQETLKAKLDS 132 (140)
Q Consensus 113 ~~~l~~l~~ef~~~~~~L~~ 132 (140)
..+++.+-..++.+...+..
T Consensus 89 ~~l~dlll~~~D~l~~lv~~ 108 (144)
T 3kyj_A 89 GEIVEILLFASDTLRAMLEE 108 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444443
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.73 E-value=3.6e-08 Score=76.22 Aligned_cols=88 Identities=16% Similarity=0.308 Sum_probs=65.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhc---CCCC---HHHHHHHhhhhccchhhcChHHHHHHHHHHHHH---hhcCCHHHHH
Q 035509 43 EDTVSLYFQETTKIIATLEEEFVK---DPID---YNALEKCLHDFKGLCVSIGASKVLIEVNKARAC---CDNGNIEGGK 113 (140)
Q Consensus 43 ~~Li~~fl~d~~~~l~~l~~Al~~---~~~D---~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~---~~~~~~~~~~ 113 (140)
.++++.|++++.++|..|+..+.. ++.| ...+.+.+|+|||||+.+|...+..+|-.+|.. .|.|...--.
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~ 85 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 367899999999999999998753 3334 457889999999999999999999999999975 5666544334
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035509 114 AALEKVKVEQETLKAKL 130 (140)
Q Consensus 114 ~~l~~l~~ef~~~~~~L 130 (140)
.+++.+-..++.+..-+
T Consensus 86 ~~~~ll~~~~D~l~~~l 102 (225)
T 2lp4_A 86 DIINLFLETKDIMQEQL 102 (225)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444443333
No 16
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=80.44 E-value=2.2 Score=27.11 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=37.9
Q ss_pred chhhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHH
Q 035509 19 DEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEE 62 (140)
Q Consensus 19 ~~~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~ 62 (140)
+...+++.+.+++.|.++-|..|+..++..|=.+.++.+..|=+
T Consensus 9 ~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 9 CGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 44556777999999999999999999999999999999887743
No 17
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=72.35 E-value=10 Score=27.87 Aligned_cols=82 Identities=7% Similarity=0.178 Sum_probs=58.7
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHH-HHHHHHHhhcCCCCHHHHHHHhhhhccch
Q 035509 7 HQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKI-IATLEEEFVKDPIDYNALEKCLHDFKGLC 85 (140)
Q Consensus 7 ~~~~~~~~~~~~~~~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~-l~~l~~Al~~~~~D~~~l~~~aH~LKGSS 85 (140)
..++.+++.+++...=....+..++.+.+ +|= ...|+..+... +..|..|...+ |.+.|+.++.
T Consensus 22 ~~~~~~~~~~~f~~s~~~~~l~~i~~~dp----~Fd---~~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~~t------ 86 (194)
T 2cw9_A 22 TDKVTDLLGGLFSKTEMSEVLTEILRVDP----AFD---KDRFLKQCENDIIPNVLEAMISG--ELDILKDWCY------ 86 (194)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHCT----TCC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBC------
T ss_pred hhhhhhhhccccCCCHHHHHHHHHHhhCC----CCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHhcC------
Confidence 34666667777777766666888888844 443 36788999998 69999999976 9999998753
Q ss_pred hhcChHHHHHHHHHHHHHhhcC
Q 035509 86 VSIGASKVLIEVNKARACCDNG 107 (140)
Q Consensus 86 asiGA~~l~~lc~~lE~~~~~~ 107 (140)
-.-...++.++......|
T Consensus 87 ----~~~~~~~~~~i~~r~~~g 104 (194)
T 2cw9_A 87 ----EATYSQLAHPIQQAKALG 104 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHHHCC
Confidence 344556666666665554
No 18
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=67.51 E-value=24 Score=24.23 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=54.2
Q ss_pred HHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhc-----------cchhhcChHHHHHHHHHHHH----HhhcCCHH
Q 035509 46 VSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFK-----------GLCVSIGASKVLIEVNKARA----CCDNGNIE 110 (140)
Q Consensus 46 i~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LK-----------GSSasiGA~~l~~lc~~lE~----~~~~~~~~ 110 (140)
-..|.+|+-..+..|+.+++.+ .|-+..+.....+| +..+.-|-.....+-..|.. +...|+.+
T Consensus 13 ~~~Y~~dT~~Vv~~lr~~l~l~-~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s~g~~P 91 (115)
T 2kmf_A 13 TGNYSQDTLTVIATLREAIDLP-QDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSYGARP 91 (115)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSC-TTCTTHHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CccHHHHHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCC
Confidence 4568999999999999999853 34344444444443 23333444444444444443 34445444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035509 111 GGKAALEKVKVEQETLKAKLDS 132 (140)
Q Consensus 111 ~~~~~l~~l~~ef~~~~~~L~~ 132 (140)
--..+.++|.+||.++..+|.+
T Consensus 92 lPek~k~Rl~~el~~AE~al~r 113 (115)
T 2kmf_A 92 IPEKLKKRLQLEFTQAERSIER 113 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHc
Confidence 4577889999999999988864
No 19
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=64.09 E-value=37 Score=28.97 Aligned_cols=87 Identities=15% Similarity=0.229 Sum_probs=57.3
Q ss_pred ChhHHHHHHHHHHHh--HHHHHHHHH-HHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcC-CHHHHH
Q 035509 38 DPAFAEDTVSLYFQE--TTKIIATLE-EEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNG-NIEGGK 113 (140)
Q Consensus 38 ~~~fv~~Li~~fl~d--~~~~l~~l~-~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~-~~~~~~ 113 (140)
+++|+..|+. |=.| ++..+..|+ ..+..++-+++.+++ +|.-|..|..++..+..+..-. ......
T Consensus 117 ~~~Fl~~L~~-fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~~---------~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk 186 (536)
T 3err_A 117 RENFIPTIVN-FSAEEISDAIREKMKKNYMSNPSYNYEIVNR---------ASLAAGPMVKWAIAQLNYADMLKRVEPLR 186 (536)
T ss_dssp CTTHHHHHHH-CCGGGCCHHHHHHHHHHTTTSTTCSHHHHHH---------HCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHh-cCcccCCHHHHHHHHHHhcCCCCCCHHHHHH---------HHHHHHHHHHHHHhcchhHHHHHhhhhhH
Confidence 4678877765 5333 466778886 577766556666553 3556677888888887765432 344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035509 114 AALEKVKVEQETLKAKLDSYF 134 (140)
Q Consensus 114 ~~l~~l~~ef~~~~~~L~~~l 134 (140)
..+..++.+...+...|+..+
T Consensus 187 ~eLk~lE~eL~e~e~eL~~ll 207 (536)
T 3err_A 187 NELQKLEDDAKDNQQKLEALL 207 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 677777788877777777654
No 20
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=57.32 E-value=41 Score=22.56 Aligned_cols=44 Identities=7% Similarity=0.070 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035509 96 EVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQ 139 (140)
Q Consensus 96 lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~~ 139 (140)
.|-+.=..++.|+++.+..++..-+.++..+...=..+++-|..
T Consensus 23 ~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Qt~liq~Ea~ 66 (105)
T 2e2a_A 23 KLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLAREAS 66 (105)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444456899999999999999999999999888888876654
No 21
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=57.19 E-value=52 Score=24.38 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=9.3
Q ss_pred hcCCHHHHHHHHHHHHH
Q 035509 105 DNGNIEGGKAALEKVKV 121 (140)
Q Consensus 105 ~~~~~~~~~~~l~~l~~ 121 (140)
..++++.+...+.+++=
T Consensus 176 ~~~d~~~A~~~v~kL~y 192 (207)
T 3bvo_A 176 EQDDFEEAKEILTKMRY 192 (207)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 35566666555555543
No 22
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=56.41 E-value=14 Score=20.74 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=14.2
Q ss_pred CCCHHHHHHHhhhhcc
Q 035509 68 PIDYNALEKCLHDFKG 83 (140)
Q Consensus 68 ~~D~~~l~~~aH~LKG 83 (140)
.+||+.++.+=|.||+
T Consensus 23 eGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 23 KGDVETYRKLKAKLKG 38 (40)
T ss_dssp TSCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 3599999999999986
No 23
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=55.82 E-value=43 Score=22.37 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035509 96 EVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQ 139 (140)
Q Consensus 96 lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~~ 139 (140)
.|-+.=..+|.|+++.+..++.+-+.++.++...=..+++-|..
T Consensus 21 ~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Qt~liq~Ea~ 64 (103)
T 1wcr_A 21 LAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQTKLIEGDAG 64 (103)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444456899999999999999999999998888888776654
No 24
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=51.57 E-value=55 Score=22.34 Aligned_cols=85 Identities=11% Similarity=0.064 Sum_probs=54.0
Q ss_pred HHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhh-----------hccchhhcChHHHHHHHHHHHH----HhhcCCHHH
Q 035509 47 SLYFQETTKIIATLEEEFVKDPIDYNALEKCLHD-----------FKGLCVSIGASKVLIEVNKARA----CCDNGNIEG 111 (140)
Q Consensus 47 ~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~-----------LKGSSasiGA~~l~~lc~~lE~----~~~~~~~~~ 111 (140)
..|.+|+-..+..|+.+++.+ .|-+........ -.+....-|-.....+-..|.. +...|+.+-
T Consensus 10 ~~Y~~dT~~Vv~~lr~~l~l~-~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sfttm~tAlNaLAGHY~s~g~~Pl 88 (113)
T 2y6x_A 10 GNFREDTLALISSLREAIALP-ENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSYPNRPL 88 (113)
T ss_dssp SCHHHHHHHHHHHHHHHHHSC-TTCTTHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred ccHHHHHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCCC
Confidence 468899999999999998853 232323333333 3334444455554444444443 344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035509 112 GKAALEKVKVEQETLKAKLDS 132 (140)
Q Consensus 112 ~~~~l~~l~~ef~~~~~~L~~ 132 (140)
-..+.++|.+||.++..+|.+
T Consensus 89 Pek~k~Rl~~el~~AE~al~R 109 (113)
T 2y6x_A 89 PEKLKARLEQEFKQVELALDR 109 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 578889999999999998875
No 25
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=50.75 E-value=11 Score=25.32 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 035509 90 ASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKL 130 (140)
Q Consensus 90 A~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L 130 (140)
...+..++..|+.+....+.+.+..+|..|+. +.-+...|
T Consensus 11 e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~-~~iT~e~L 50 (103)
T 1wjt_A 11 EEELLRIAKKLEKMVSRKKTEGALDLLKKLNS-CQMSIQLL 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHT-SCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhC-CCCCHHHH
Confidence 56888999999998877788888888888854 34333333
No 26
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=50.35 E-value=59 Score=22.36 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035509 97 VNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQ 139 (140)
Q Consensus 97 c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~~ 139 (140)
|.+.=..++.|+++.+..++..-+.++.++...=..+++-|..
T Consensus 41 ~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~AH~~QT~Liq~EA~ 83 (120)
T 3l8r_A 41 VHEAFDAMREKNYILAEQKLQEANDELLKAHQAQTDLLQEYAS 83 (120)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444456889999999999999999999998887787776654
No 27
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=49.91 E-value=1.5e+02 Score=26.82 Aligned_cols=128 Identities=10% Similarity=0.171 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHhcc-cc-------hh---hhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHH
Q 035509 4 NPLHQQIATMRQSF-LD-------EE---ILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYN 72 (140)
Q Consensus 4 ~~l~~~~~~~~~~~-~~-------~~---~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~ 72 (140)
+++++.+.++++.. .. ++ .++.-...++.|...-....+..+.+.|.+.+..+ ..|..|...+ |-.
T Consensus 257 ~~vrq~L~dLl~~~~~~~g~~~~s~~l~~ai~~l~~k~~dL~r~L~~AvvdqvsD~F~dt~~pL-~~Li~Aa~~g--~ee 333 (832)
T 4igg_A 257 NAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPL-LVLIEAAKNG--NEK 333 (832)
T ss_dssp HHHHHHHHHHHHHHHTCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSHHH-HHHHHHHHTT--CHH
T ss_pred HHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH-HHHHHHHHcC--cHH
Confidence 45666777777521 11 11 23333445555554455667888888887655444 4566666654 666
Q ss_pred HHHHHhhhhc--------------cchhhc-ChHHHHHHHHHHHHHhh-----------cCCHHHHHHHHHHHHHHHHHH
Q 035509 73 ALEKCLHDFK--------------GLCVSI-GASKVLIEVNKARACCD-----------NGNIEGGKAALEKVKVEQETL 126 (140)
Q Consensus 73 ~l~~~aH~LK--------------GSSasi-GA~~l~~lc~~lE~~~~-----------~~~~~~~~~~l~~l~~ef~~~ 126 (140)
.+...+..|- +.|.|= |...+...|.++|.+++ .-+...+..-|+.+.+.|...
T Consensus 334 ~~~e~a~~F~eha~~lvevA~Lv~~~s~ne~~v~~i~~aa~~le~L~PQVI~Aar~L~~~P~Sk~A~Enle~f~~~W~~~ 413 (832)
T 4igg_A 334 EVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQ 413 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 6655554443 333222 44556666777777544 234456677888888888776
Q ss_pred HHHHHHHH
Q 035509 127 KAKLDSYF 134 (140)
Q Consensus 127 ~~~L~~~l 134 (140)
...|...+
T Consensus 414 v~~L~~av 421 (832)
T 4igg_A 414 VRVLTDAV 421 (832)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665443
No 28
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=49.75 E-value=57 Score=21.99 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035509 97 VNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQ 139 (140)
Q Consensus 97 c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~~ 139 (140)
|.+.=..++.|+++.+..++..-+.++.++...=..+++-|..
T Consensus 26 ~~eAl~~Ak~gdfe~A~~~l~eA~~~l~~AH~~QT~Liq~Ea~ 68 (109)
T 3k1s_A 26 AMEALQFAKQGKMAEADEAMVKAKEAINEAHHFQTELIQSEAR 68 (109)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444456889999999999999999999998887777776654
No 29
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=47.51 E-value=73 Score=22.62 Aligned_cols=51 Identities=12% Similarity=0.202 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHhcccchhhhHHHHHHHHhcccC-CChhHHHHHHHHHHH
Q 035509 1 MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATE-DDPAFAEDTVSLYFQ 51 (140)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~lD~~f~~L~~L~~~-~~~~fv~~Li~~fl~ 51 (140)
|+-+.++.+...+++-.+..+-+++....+++|..+ -.|.||..+|+.-++
T Consensus 4 ~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~ald 55 (165)
T 2rg8_A 4 LDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALE 55 (165)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHc
Confidence 455678888888888888889888888889988532 234455555554443
No 30
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=46.13 E-value=82 Score=22.78 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 035509 91 SKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLD 131 (140)
Q Consensus 91 ~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~ 131 (140)
.++..+..+|+.+-..++++.+...+.+|+= |..+...+.
T Consensus 132 ~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y-~~kl~~~ik 171 (181)
T 3uo3_A 132 ERIQDIEAQLGQCYNDKDYAAAVKLTVELKY-WYNLAKAFK 171 (181)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4666777777777777788877777666654 444444443
No 31
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=42.46 E-value=24 Score=24.14 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhh
Q 035509 42 AEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVS 87 (140)
Q Consensus 42 v~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSas 87 (140)
+..+++.|+.--.+...++..|.. =...+| -|.+||.|--
T Consensus 83 lekildsfisvireqyhdlqaaas----yittvr--dhifkgtsfl 122 (146)
T 3zta_A 83 LEKILDSFISVIREQYHDLQAAAS----YITTVR--DHIFKGTSFL 122 (146)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHH----HHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HHHhcchHHH
Confidence 456666776655555555555432 122344 3889998753
No 32
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=40.34 E-value=7.7 Score=29.54 Aligned_cols=72 Identities=18% Similarity=0.347 Sum_probs=39.6
Q ss_pred ccchhhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHH-HHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHH
Q 035509 17 FLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKI-IATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLI 95 (140)
Q Consensus 17 ~~~~~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~-l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~ 95 (140)
++.+.-+...+.+++++ +|.|- ...|++++... +..|-.|...+ |...|+.+++. .-...
T Consensus 55 ~f~~te~a~~l~~Ik~~----DPsF~---~~~Fl~~a~~ai~p~Il~Af~~G--D~~~Lk~llse----------~~y~~ 115 (222)
T 3qk9_A 55 FFAETESSRVYSQFKLM----DPTFS---NESFTRHLREYIVPEILEAYVKG--DVKVLKKWFSE----------APFNV 115 (222)
T ss_dssp -----CCHHHHTTCC---------CC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBCH----------HHHHH
T ss_pred ccCCCHHHHHHHHHHHh----CCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHhhcCH----------HHHHH
Confidence 44444444445555555 44454 36778888877 56788898876 99999987542 34444
Q ss_pred HHHHHHHHhhcC
Q 035509 96 EVNKARACCDNG 107 (140)
Q Consensus 96 lc~~lE~~~~~~ 107 (140)
.+..+.+..+.|
T Consensus 116 f~~~i~~r~~~G 127 (222)
T 3qk9_A 116 YAAQQKIFKEQD 127 (222)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHCC
Confidence 555565555444
No 33
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=37.83 E-value=40 Score=17.35 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035509 117 EKVKVEQETLKAKLDSYFQ 135 (140)
Q Consensus 117 ~~l~~ef~~~~~~L~~~l~ 135 (140)
+.|+.|..+.+.....+++
T Consensus 2 Q~IkkELtQIK~kvDsLLe 20 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLE 20 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776665
No 34
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=36.34 E-value=1.1e+02 Score=21.68 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCC-HHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 035509 38 DPAFAEDTVSLYFQETTKIIATLEEEFVKDPID-YNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAAL 116 (140)
Q Consensus 38 ~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D-~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l 116 (140)
+|+|+.++++.- ..|..+-.. .| -.++..+...++ .++..+...|+.+-..++++.+...+
T Consensus 91 d~~fLme~me~r--------E~le~~~~~--~d~~~~l~~l~~~~~--------~~~~~~~~~l~~~~~~~d~~~A~~~~ 152 (174)
T 3hho_A 91 DPMFLMEQMELR--------EELESVTAC--ADPEAALVAFDTKVT--------AMQRHYLAQLQGQLAQSEWLAAADQI 152 (174)
T ss_dssp CHHHHHHHHHHH--------HHHHHHTSS--SSHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHH--------HHHHHHhhc--cchHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 466766555432 333333332 25 455666655555 35667777788877788888887665
Q ss_pred HHHHHHHHHHHHHHH
Q 035509 117 EKVKVEQETLKAKLD 131 (140)
Q Consensus 117 ~~l~~ef~~~~~~L~ 131 (140)
.+|+= |.++...+.
T Consensus 153 ~kL~f-~~kl~~~i~ 166 (174)
T 3hho_A 153 RKLKF-IAKLKNEVE 166 (174)
T ss_dssp HHHHH-HHHHHHHHH
T ss_pred HHHHH-HHHHHHHHH
Confidence 55543 333333333
No 35
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=35.90 E-value=92 Score=22.07 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhc----CCCCHHHHHHHhhhhccchhhcChHHHH
Q 035509 23 LNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVK----DPIDYNALEKCLHDFKGLCVSIGASKVL 94 (140)
Q Consensus 23 lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~----~~~D~~~l~~~aH~LKGSSasiGA~~l~ 94 (140)
+...+.++..+.++.+..-...+++.|+.+-.+.+..++..+.. ++.-|..=..++-..+++++.-||+..+
T Consensus 102 ~~~~~~~l~~~A~~~~D~~t~~~l~~~l~eqe~~~~~l~~~l~~l~~~g~~l~~~d~~l~~~~~~~~~~~~~~~~~ 177 (189)
T 3oj5_A 102 VTDQVGRLTAVARDEGDFLGEQFMQWFLQEQIEEVALMATLVRVADRAGANLFELENFVAREVDVAPAASGAPHAA 177 (189)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHHhhCCCCCCCCCCccc
Confidence 33334445545444444445577778888877777777776642 0000111122344556656777776654
No 36
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=35.06 E-value=1.2e+02 Score=21.49 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhcccchhhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhh
Q 035509 4 NPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFV 65 (140)
Q Consensus 4 ~~l~~~~~~~~~~~~~~~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~ 65 (140)
++.+++|.+++..+.|.++|+ .+.+-...+-+...|+..+..-......|..-+.
T Consensus 42 a~vrq~Ia~LP~eVsd~s~l~-------klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~ 96 (152)
T 4fla_A 42 ATVRQKIASLPQEVQDVSLLE-------KITDKEAAERLSKTVDEACLLLAEYNGRLAAELE 96 (152)
T ss_dssp HHHHHHHHTSCGGGTCGGGGG-------GCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccCHHHHH-------HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888877 5554332222224444444444444444444443
No 37
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.86 E-value=86 Score=21.17 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=34.4
Q ss_pred CChhHHHHHHHHHhcccchhhhHHHHHHHHhcccCCChhHHHHHHHHH
Q 035509 2 ENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLY 49 (140)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~lD~~f~~L~~L~~~~~~~fv~~Li~~f 49 (140)
.++.+..++..+++--+..|-+++...-+++|. -|.|..++|...
T Consensus 2 p~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~---~p~f~~e~V~~~ 46 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELE---VPHFHHELVYEA 46 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT---CGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC---CCccHHHHHHHH
Confidence 356788899999999998898998888888884 556665555543
No 38
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=31.33 E-value=52 Score=19.89 Aligned_cols=37 Identities=14% Similarity=0.336 Sum_probs=28.7
Q ss_pred HHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHH
Q 035509 25 DQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEE 62 (140)
Q Consensus 25 ~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~ 62 (140)
.+|.+++++-. .+|+.+..++...-..-|+++..|.+
T Consensus 11 Pqf~~lR~~vq-~NP~~L~~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 11 PQFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp HHHHHHHHHHH-HCGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 57889998866 48988888888887777777766543
No 39
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=28.86 E-value=84 Score=17.98 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc
Q 035509 108 NIEGGKAALEKVKVEQETLKAKLDSYFQ-LVKQ 139 (140)
Q Consensus 108 ~~~~~~~~l~~l~~ef~~~~~~L~~~l~-~~~~ 139 (140)
+.+.....+.+|-.+|.....+|.+-+. +|.+
T Consensus 13 ~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 13 SLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777888888888888888875543 6654
No 40
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=28.62 E-value=1.6e+02 Score=20.90 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=32.6
Q ss_pred CHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509 70 DYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDS 132 (140)
Q Consensus 70 D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~ 132 (140)
|..++..+...++ .++..+...|..+-..++++.+...+.+++= |.++...+.+
T Consensus 110 d~~~l~~l~~~~~--------~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y-~~kl~~~i~~ 163 (171)
T 1fpo_A 110 DEARLESFIKRVK--------KMFDTRHQLMVEQLDNETWDAAADTCRKLRF-LDKLRSSAEQ 163 (171)
T ss_dssp CHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4445555544433 3556666667666667788888877777665 4455555544
No 41
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=28.49 E-value=2.4e+02 Score=22.94 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=24.3
Q ss_pred HHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChH
Q 035509 46 VSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGAS 91 (140)
Q Consensus 46 i~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~ 91 (140)
|+.=+++......+|..++.+++.|...|.......=+++.|=|-.
T Consensus 307 iE~Aie~i~~k~~eL~~~~~~~~~d~~~L~~~LqG~v~~~Vn~G~~ 352 (428)
T 2wm9_A 307 IEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPL 352 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHSCSSSCCTH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccCccCCcHH
Confidence 3444555566666666666655556665555544433344443333
No 42
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=28.13 E-value=90 Score=19.66 Aligned_cols=26 Identities=4% Similarity=0.036 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHh
Q 035509 39 PAFAEDTVSLYFQETTKIIATLEEEF 64 (140)
Q Consensus 39 ~~fv~~Li~~fl~d~~~~l~~l~~Al 64 (140)
.+++.++.+.|++++...--.+.+-=
T Consensus 29 ee~ll~lADdFV~~V~~~ac~lAKhR 54 (76)
T 1h3o_B 29 EEMLLQIADDFIESVVTAACQLARHR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788899999998887776666543
No 43
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=27.52 E-value=82 Score=25.34 Aligned_cols=74 Identities=9% Similarity=0.020 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 035509 52 ETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLD 131 (140)
Q Consensus 52 d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~ 131 (140)
..+..++++..++= +|.|...++..+..|+++ +..+..+++.+.. +..+....+..+...++..+.+++...+
T Consensus 283 ~i~~~VDeLa~slY-Pp~d~~~v~~~~~~L~~~-----~~~~~~~~~~~~~-~~~~~~~Wi~~l~~A~~h~~~~~~~~~~ 355 (360)
T 3ay5_A 283 EISPSVDDLALSIY-PPMSHLTVRINSAKLVSV-----LKKALEITKASHV-TPQPEDSWIPLLINAIDHCMNRIKELTQ 355 (360)
T ss_dssp HHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHHH-----HHHHHHHHHHSTT-CC----CHHHHHHHHHHHHHHHHHHTTG
T ss_pred HhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHH-----HHHHHHHHHHccC-CCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445544443 356777777777766663 2233333332211 3444555667777777887777776654
Q ss_pred H
Q 035509 132 S 132 (140)
Q Consensus 132 ~ 132 (140)
.
T Consensus 356 ~ 356 (360)
T 3ay5_A 356 S 356 (360)
T ss_dssp G
T ss_pred H
Confidence 3
No 44
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.76 E-value=1.2e+02 Score=21.17 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=33.7
Q ss_pred ChhHHHHHHHHHhcccchhhhHHHHHHHHhcccCCChhHHHHHHHHH
Q 035509 3 NNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLY 49 (140)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~lD~~f~~L~~L~~~~~~~fv~~Li~~f 49 (140)
.+.+..++..+++--+..|-+++...-+++|. -|.|..++|...
T Consensus 5 ~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~---~p~f~~e~V~~~ 48 (152)
T 2ion_A 5 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELE---VPHFHHELVYEA 48 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT---CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC---CCcchHHHHHHH
Confidence 56788889999999888898888888888884 455655555543
No 45
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=25.42 E-value=44 Score=25.10 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=16.5
Q ss_pred hhhcChHHHHHHHHHHHH
Q 035509 85 CVSIGASKVLIEVNKARA 102 (140)
Q Consensus 85 SasiGA~~l~~lc~~lE~ 102 (140)
-|.+||..+.++|..|+.
T Consensus 151 eA~~Ga~~ileL~~~l~~ 168 (198)
T 3p9y_A 151 DALMGAFVITDMINMMAK 168 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478999999999999987
No 46
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=24.08 E-value=1.3e+02 Score=18.29 Aligned_cols=64 Identities=6% Similarity=0.031 Sum_probs=31.7
Q ss_pred CCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhh--cC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509 69 IDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCD--NG-NIEGGKAALEKVKVEQETLKAKLDSY 133 (140)
Q Consensus 69 ~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~--~~-~~~~~~~~l~~l~~ef~~~~~~L~~~ 133 (140)
+|++.|+..|-.+++.+..|-. .+..+...+..... .| ..+.....+.++...+.++...|..+
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~-~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i 72 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQ-ILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEI 72 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777776665532 23334444443321 12 22333444555555555555555543
No 47
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=23.84 E-value=63 Score=24.52 Aligned_cols=19 Identities=11% Similarity=-0.017 Sum_probs=16.5
Q ss_pred hhhcChHHHHHHHHHHHHH
Q 035509 85 CVSIGASKVLIEVNKARAC 103 (140)
Q Consensus 85 SasiGA~~l~~lc~~lE~~ 103 (140)
.|.+||..+.++|..|+..
T Consensus 167 eA~~Ga~~ileL~~~le~~ 185 (214)
T 4h3k_B 167 EATLGAFLICELCQCIQHT 185 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999864
No 48
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=23.83 E-value=77 Score=23.36 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHhhhhcc
Q 035509 54 TKIIATLEEEFVKDPIDYNALEKCLHDFKG 83 (140)
Q Consensus 54 ~~~l~~l~~Al~~~~~D~~~l~~~aH~LKG 83 (140)
.++...|..||+.+ |-+++.+++..||-
T Consensus 152 ~~L~~~ID~ALd~~--D~e~F~~Lt~~L~~ 179 (188)
T 3do9_A 152 ERLLKQIDEALDKQ--DKEAFHRLTAELKM 179 (188)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 56789999999976 89999999988874
No 49
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=23.81 E-value=47 Score=23.21 Aligned_cols=46 Identities=22% Similarity=0.067 Sum_probs=25.6
Q ss_pred cchhhcChH-----HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509 83 GLCVSIGAS-----KVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDS 132 (140)
Q Consensus 83 GSSasiGA~-----~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~ 132 (140)
|||++-|.. .|..++..++..+.. |..-++++. .++|..+...|.+
T Consensus 1 ~~~~~~~Ms~~~~~~v~kW~~sl~Ka~df---DsWGQvvEA-~deY~~La~~lkk 51 (128)
T 1ug7_A 1 GSSGSSGMSEVTRSLLQRWGASLRRGADF---DSWGQLVEA-IDEYQILARHLQK 51 (128)
T ss_dssp CCSCSSSCCSHHHHHHHHHHHHHHHHHHH---HHHTCHHHH-HHHHHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhcCC---CcHHHHHHH-HHHHHHHHHHHHH
Confidence 566666643 566777777777655 333333333 3456666555544
No 50
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=23.51 E-value=1.6e+02 Score=19.16 Aligned_cols=49 Identities=4% Similarity=-0.060 Sum_probs=35.8
Q ss_pred CHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 035509 70 DYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKV 121 (140)
Q Consensus 70 D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ 121 (140)
....+..++..+|-.+- -.++..++.++...+..|+.+.....+..+.+
T Consensus 87 ~~~~i~~y~~~v~~~~~---~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~ 135 (143)
T 2r6a_C 87 SEQELEDYIRHVLNRPK---WLMLKVKEQEKTEAERRKDFLTAARIAKEMIE 135 (143)
T ss_dssp CHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44567888888887664 47788888888888888888777666655444
No 51
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.40 E-value=53 Score=25.83 Aligned_cols=51 Identities=10% Similarity=0.151 Sum_probs=37.6
Q ss_pred CChhHHHHHHHHHhcccchhhhHHHHHHHHhcccC-CChhHHHHHHHHHHHh
Q 035509 2 ENNPLHQQIATMRQSFLDEEILNDQFIQLESMATE-DDPAFAEDTVSLYFQE 52 (140)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~lD~~f~~L~~L~~~-~~~~fv~~Li~~fl~d 52 (140)
+.+.+..+...+++-.+..|-+++...-+++|..+ --++||..+|...++-
T Consensus 6 s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~ 57 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLER 57 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCC
Confidence 45678888888888888889888888889999533 2345666666666654
No 52
>3vhl_A Dedicator of cytokinesis protein 8; signal transduction, guanine nucleotide exchang factor, GTPA signaling protein; 2.08A {Mus musculus}
Probab=22.23 E-value=2.7e+02 Score=21.48 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=21.9
Q ss_pred HHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHH
Q 035509 50 FQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKV 93 (140)
Q Consensus 50 l~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l 93 (140)
+++......+|..++.+.+.|...|....+..=++..|=|-...
T Consensus 171 ie~i~~k~~eL~~~~~~~~~d~~~L~~~L~G~Vd~~VngG~~~y 214 (288)
T 3vhl_A 171 IEDMKKKTLQLAVATHQEPPDAKMLQMVLQGSVGATVNQGPLEV 214 (288)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHCCSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCChHHHHHhhheEeccccccCHHHH
Confidence 44445555555555554445655555554444444445443333
No 53
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=21.59 E-value=83 Score=24.48 Aligned_cols=40 Identities=8% Similarity=-0.005 Sum_probs=31.2
Q ss_pred ccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 035509 82 KGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKV 121 (140)
Q Consensus 82 KGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ 121 (140)
-|+.+.|++.-+...|.++-++.++|+.+.+..+..++..
T Consensus 210 ~G~~G~i~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~ 249 (309)
T 3fkr_A 210 AGATGAMTGGGFPDGIRPILEAWREGRHDDAYARYQAWLP 249 (309)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcEEEEhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555566777788999999999999999998877665544
No 54
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=20.36 E-value=2.1e+02 Score=19.38 Aligned_cols=28 Identities=21% Similarity=0.013 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHhhc
Q 035509 39 PAFAEDTVSLYFQETTKIIATLEEEFVK 66 (140)
Q Consensus 39 ~~fv~~Li~~fl~d~~~~l~~l~~Al~~ 66 (140)
+.-...++..|+.+-++++-.|+..+..
T Consensus 125 D~~T~~ll~~~l~~~Ek~~w~l~~~l~~ 152 (158)
T 2c41_A 125 DIGTADLYTRLVQTHQKHRWFLKEFLAK 152 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344456666666666666666666553
No 55
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.27 E-value=1.7e+02 Score=18.38 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509 108 NIEGGKAALEKVKVEQETLKAKLDSYF 134 (140)
Q Consensus 108 ~~~~~~~~l~~l~~ef~~~~~~L~~~l 134 (140)
+++.+...|.+|-.+|.....+|.+-+
T Consensus 15 sld~LQTrfARLLaEy~ssQ~KLKqRi 41 (74)
T 3swf_A 15 SVDLLQTRFARILAEYESMQQKLKQRL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888776543
Done!